HHsearch results for GI: 254780468 and protein with PDBid: 3gdi_A
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.60 E-value=6.3e-14 Score=127.77 Aligned_cols=144 Identities=10% Similarity=0.025 Sum_probs=127.3
Q ss_pred HHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCC-EEEEEEEEECC
Q ss_conf 98325938999987997899988899762899778338978988626976899999999999607897-38999999869
Q gi|254780468|r 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAA 488 (963)
Q Consensus 410 al~~s~~~i~~~d~~~~~~~~n~~~~~~lG~~~~~l~~~~~~~~~~ihp~D~~~~~~~l~~~~~~~~~-~~~~e~r~r~~ 488 (963)
+.+.+++++|.+|.++..+++|+++++++||+++++.+. .|.+++||+|++.+.......++.... ....|+|++++
T Consensus 160 i~~~~~~~i~~~d~~~~~~~vn~~~~~~~Gy~~ee~~~~--~~~~~ihpeD~~~~~e~~~~~~~~~~~~~~~~e~r~~~~ 237 (309)
T 3gdi_A 160 IPPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIET--PVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTR 237 (309)
T ss_dssp CCGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTS--BHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECT
T ss_pred HHHCCCEEEEEECCCCCEECCCCCHHHHCCCCHHHHHCC--CCCEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 441384699998799963136800233338786785157--712266887899999999999983998732678999878
Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9968999872267687999889999999853057731232166306775324066999999999999
Q gi|254780468|r 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 (963)
Q Consensus 489 dG~~~w~~~~~~~i~~~~g~~~~~~g~~~DIt~~~~~~~~l~~~a~~D~lTGL~NR~~f~~~l~~~l 555 (963)
||+++|+..+++|+++..|+...++...+|||++|+.++.+...+.++..+...+.+.+.+.+...+
T Consensus 238 dG~~~wv~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~i~r~l 304 (309)
T 3gdi_A 238 NGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAPPCPEEKTPHPSVQELTEQIHRLL 304 (309)
T ss_dssp TSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCSSSCTTSCCSSCCCCSCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9929999999999990899966899999997776122667755450334324799999999999996