BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] (963 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|86356622|ref|YP_468514.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|86280724|gb|ABC89787.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] Length = 965 Score = 974 bits (2519), Expect = 0.0, Method: Composition-based stats. Identities = 520/965 (53%), Positives = 694/965 (71%), Gaps = 2/965 (0%) Query: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60 ML + + + + A EP+ IS D LDLT+ T IY NQGE F Sbjct: 1 MLPKSPSGRVIAVIAALFLAVFALSAGVTQAAEPVKISRDDTALDLTATTEIYANQGEAF 60 Query: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 QV TAA DGI RRIEV ASS H+GDWAVFALAN S+ QLER+IV PH+RLV S F P Sbjct: 61 QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 120 Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180 DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E+STP LPQIYLWEPN Sbjct: 121 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELSTPELPQIYLWEPNA 180 Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 YKDT+N+FTLYRGI++G+A LLA+FLTI ++V +SML T A+AW VLGYI +DFGFL Sbjct: 181 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 240 Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 KL+++ S + IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + + +A+LF ++ Sbjct: 241 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 300 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 Y P + A IAR++ A IIY G Y+RA+LL+PAW L +W G W+ +T Sbjct: 301 IYDPSIAAGIARLSFALTAATGLLLIIYLGFNRYDRAILLVPAWALTLVWLFGAWLTVTG 360 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 RLDNDIIQPAL GGLVLIV+LIGFTV+QH A G F QG+FSD ERQSLA+ GSGD+VWD Sbjct: 361 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWD 420 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 WD+ RDRV T PD++ LGL+ G+MHG RNWLP +H +DRD FR LD + +RRGRL Sbjct: 421 WDVARDRVVTIPDVSVKLGLSPGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 480 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 +EFR+RA D FHW++IR RP+ SNG+I+R +G D+TEQK S+E +L +A DNLTG Sbjct: 481 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLQDALHDNLTG 540 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNRQ FLDRL +L L+ D LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ Sbjct: 541 LPNRQVFLDRLQAVLALAPGGDTLRPTVMVIDIDRYKLVNDALGVAAGDNILIALTRRLR 600 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 L+K D LARL+G++FG+IL+SE+N K+ADFA A+ K+I +PIN REI +TASIG Sbjct: 601 RLMKPQDTLARLAGDQFGLILVSEHNPAKVADFADAVSKAIMVPINFSNREIILTASIGL 660 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718 ASW + ++S +L +AELAMY AK GGN VE F+ + DR+ ++ DL A+E Sbjct: 661 ASWVDRQESASGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERR 720 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 EL +VY PI RL D E+ G EAL++W+HPK GNI SEF+ IAE +I + +F LE+ Sbjct: 721 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGNIPPSEFIPIAESSDLIGPLGMFALEQA 780 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 D++SW++Q PIF+ IN++S LL+NEL + ++++++KT +PSR+KL +ES+VM Sbjct: 781 TNDLMSWQNQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCTPSRLKLELTESMVM 840 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898 NPE++RL+L +L++ GI L LDDFGT S L+YL PFDT+K + +L+ S++K+ + Sbjct: 841 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDTIKLDKALVRDSSDKKATV 900 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 LRS+I MA+ +E ++A+ I D EL +MGC Y Q P+ +S+L+LL++RFP Sbjct: 901 LRSVIAMARELEMKVVAEGIESNEDAIELAKMGCSYGQSYLFGPPMPSDSVLRLLRDRFP 960 Query: 959 LVKNT 963 L K Sbjct: 961 LTKRA 965 >gi|222085144|ref|YP_002543674.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] gi|221722592|gb|ACM25748.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] Length = 970 Score = 972 bits (2512), Expect = 0.0, Method: Composition-based stats. Identities = 529/942 (56%), Positives = 691/942 (73%), Gaps = 2/942 (0%) Query: 24 WMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIR 83 ++ + A EP+ IS D LDLT+ T IY NQGE FQV TAA DGI RRIEV +SS Sbjct: 29 FLAGMAQAAEPVKISRDDTALDLTATTEIYTNQGEAFQVSTAAGADGIRRRIEVRSSSPN 88 Query: 84 HRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPN 143 H+GDWAVFALAN S+ QLER+IV PH+RLV S F PDLGS+RI+++TPSEGF+LDR P+ Sbjct: 89 HQGDWAVFALANVSEEQLERVIVAPHFRLVNSKMFWPDLGSQRIVAITPSEGFALDRQPS 148 Query: 144 SDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLA 203 ++DVFRIT+NPGAVVTF+ E+S+PNLPQ+YLWEPN YKDTVN+FTLYRGI++G+A LLA Sbjct: 149 DEADVFRITLNPGAVVTFVAELSSPNLPQLYLWEPNAYKDTVNAFTLYRGIVLGIAGLLA 208 Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263 +FLTI ++V +SML T A+AW VLGYI +DFGFL KL+++ S + IWRAC+E+AL+S Sbjct: 209 VFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLGKLISITSSDQRIWRACAEVALAS 268 Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 SL+IFLF YL+ NRWHA +GY+T + I +A+LF ++ Y P + + IAR++LA Sbjct: 269 SLVIFLFTYLNLNRWHAHLGYVTLAWILGLALLFGVAIYDPSIASGIARLSLALTATAGL 328 Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 IIY G Y+RA+LL+PAW LI +W G WM IT +LDNDIIQPAL GGLVLIV+LIG Sbjct: 329 LLIIYLGFSRYDRAILLVPAWALILVWLFGGWMTITGKLDNDIIQPALGGGLVLIVLLIG 388 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 FTV+QH A G F QG+FSD ERQSLA+ GSGD VWDWD+ RDRV TTPDI+T LGL+ G Sbjct: 389 FTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDTVWDWDVARDRVVTTPDISTKLGLSPG 448 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 +MHG RNWLP +H +DRD FR LD + +RRGRL +EFR+RA D FHW+ IR RP+ Sbjct: 449 TMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLNHEFRIRAEDGHFHWLSIRARPVL 508 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 SNG+I+R +G D+TEQK S+E +L +A DNLTG+PNRQ FLDRL +L L+ + Sbjct: 509 GSNGEIIRCVGTIVDVTEQKNSIERLLHDALHDNLTGLPNRQVFLDRLQAVLTLAPEGNQ 568 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ L+K D LARLSG++FG+IL+S Sbjct: 569 LRPTVMVIDIDRYKLVNDTLGVAAGDNILIALTRRLRRLMKPQDTLARLSGDQFGLILVS 628 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 E + K+ADFA A+ K+I +PIN REI +TASIG SW + +S +L +AELAMY Sbjct: 629 ERDPAKVADFADAISKAIMVPINFANREIILTASIGLTSWVDQQENASGLLSDAELAMYR 688 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK GGN VE F+ + DR+ ++ DL AVE EL LVY PI+RL D E+ G EAL Sbjct: 689 AKRAGGNRVEPFQPAFRSFGTDRLQLETDLRRAVERKELSLVYQPIVRLEDAEVAGFEAL 748 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+HPK GNI SEF+ IAE +I + +F LE+ D+++W+ Q P+F+ IN++ Sbjct: 749 MRWEHPKRGNIPPSEFIPIAEASDIIGPLGMFALEQATNDLMAWQRQTGDLPLFVSINLS 808 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 S LL+NEL + ++AL++KT P RIKL +ES VM NPE++RL+LG+LR GI L LD Sbjct: 809 SVQLLNNELYDDIRALLAKTHCEPHRIKLELTESQVMENPEQARLVLGKLRDAGIGLALD 868 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 DFGT S LSYL PFDT+K + +++ ++K+ +LRS+I MA+ + ++A+ I E Sbjct: 869 DFGTGYSSLSYLTRFPFDTIKLDKTMVCDESDKKAILLRSVISMARELNMRVVAEGIESE 928 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D EL +MGC Y Q P+G +S+L+LLKERFPL K Sbjct: 929 EDALELAKMGCAYGQSFIFGPPMGTDSVLRLLKERFPLTKRA 970 >gi|190890692|ref|YP_001977234.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190695971|gb|ACE90056.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|327192550|gb|EGE59501.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 970 Score = 968 bits (2502), Expect = 0.0, Method: Composition-based stats. Identities = 518/965 (53%), Positives = 691/965 (71%), Gaps = 2/965 (0%) Query: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60 ML + I + + A EP+ IS D LDLT+ T IY NQGE F Sbjct: 6 MLPKSPSGRVIAVIAAIFLAAFALSAGLARAAEPVKISRDDTALDLTATTEIYANQGEAF 65 Query: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 QV TAA DGI RRIEV ASS H+GDWAVFALAN S+ QLER+IV PH+RLV S F P Sbjct: 66 QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 125 Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180 DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E+STP LPQIYLWEPN Sbjct: 126 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELSTPELPQIYLWEPNA 185 Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 YKDT+N+FTLYRGI++G+A LLA+FLTI ++V +SML T A+AW VLGYI +DFGFL Sbjct: 186 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 245 Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 KL+++ S + IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + + +A+LF ++ Sbjct: 246 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 305 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 Y P + A IAR++ A IIY G Y+RA+LL+PAW L +W G W+ +T Sbjct: 306 IYDPSIAAGIARLSFALTAATGLLLIIYLGFNRYDRAILLVPAWALTLVWLFGAWLTVTG 365 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 RLDNDIIQPAL GGLVLIV+LIGFTV+QH A G F QG+FSD ERQSLA+ GSGD+VWD Sbjct: 366 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWD 425 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 WD+ RDRV T PD++ LGL+ G+MHG RNWLP +H +DRD FR LD + +RRGRL Sbjct: 426 WDVARDRVVTIPDVSVKLGLSPGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 485 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 +EFR+RA D FHW++IR RP+ SNG+I+R +G D+TEQK S+E +L +A DNLTG Sbjct: 486 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLQDALHDNLTG 545 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNRQ FLDRL +L L+ + LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ Sbjct: 546 LPNRQVFLDRLQAVLALAPGGETLRPTVMVIDIDRYKLVNDALGVAAGDNILIALTRRLR 605 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 L+K D LARL+G++FG+IL+SE+N K+ADFA A+ K+I +PIN REI +TASIG Sbjct: 606 RLMKPQDTLARLAGDQFGLILVSEHNPAKVADFADAVSKAIMVPINFSNREIILTASIGL 665 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718 ASW + ++S +L +AELAMY AK GGN VE F+ + DR+ ++ DL A+E Sbjct: 666 ASWVDRQESASGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERR 725 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 EL +VY PI RL D E+ G EAL++W+HPK G I SEF+ IAE +I + +F LE+ Sbjct: 726 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGTIPPSEFIPIAEASDLIGPLGMFALEQA 785 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 D++SW++Q PIF+ IN++S LL+NEL + ++++++KT +PSR+KL +ES+VM Sbjct: 786 TNDLMSWQNQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCAPSRLKLELTESMVM 845 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898 NPE++RL+L +L++ GI L LDDFGT S L+YL PFDT+K + +L+ ++K+ + Sbjct: 846 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDTIKLDKALVRDGSDKKATV 905 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 LRS+I MA+ +E ++A+ I D EL +MGC Y Q P+ S+L+LL++RFP Sbjct: 906 LRSVIAMARELEMKVVAEGIESNEDAIELAKMGCSYGQSYLFGPPIPSESVLRLLRDRFP 965 Query: 959 LVKNT 963 L K Sbjct: 966 LTKRA 970 >gi|241203436|ref|YP_002974532.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857326|gb|ACS54993.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 965 Score = 959 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 519/965 (53%), Positives = 696/965 (72%), Gaps = 2/965 (0%) Query: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60 ML + + + ++ + A EP+ IS D LDLT+ T IY NQGE F Sbjct: 1 MLPKSPSGRVIAVIAALFLAAFAFVAGVAQAAEPVKISRDDTALDLTATTEIYANQGEAF 60 Query: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 QV TAA DGI RRIEV ASS H+GDWAVFALAN S+ QLER+IV PH+RLV S F P Sbjct: 61 QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 120 Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180 DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E+STP LPQIYLWEPN Sbjct: 121 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELSTPELPQIYLWEPNA 180 Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 YKDT+N+FTLYRGI++G+A LLA+FLTI ++V +SML T A+AW VLGYI +DFGFL Sbjct: 181 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 240 Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 KL+++ S + IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + + +A+LF ++ Sbjct: 241 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 300 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 Y P + A IAR++ A IIY G Y+RA+LL+PAW LI +W G W+ +T Sbjct: 301 IYDPSIAAGIARLSFALTATMGLLLIIYLGFNRYDRAILLVPAWALILVWLFGAWLTVTG 360 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 RLDNDIIQPAL GGLVLIV+LIGFTV+QH A G F QG+FSD ERQSLA+ GSGD+VWD Sbjct: 361 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWD 420 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 WD+ RDRV T PD++ LGL+ G+MHG RNWLP +H +DRD FR LD + +RRGRL Sbjct: 421 WDVARDRVVTIPDVSIKLGLSPGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 480 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 +EFR+RA D FHW++IR RP+ SNG+I+R +G D+TEQK S+E +L +A DNLTG Sbjct: 481 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLHDALHDNLTG 540 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNRQ FLDRL ++L L+ D LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ Sbjct: 541 LPNRQVFLDRLQSVLALAPGGDTLRPTVMVIDIDRYKLVNDSLGVAAGDNILIALTRRLR 600 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 LLK D LARL+G++FG+IL+SE+N K+ADFA A+ K+I +PIN REI +TAS+G Sbjct: 601 RLLKPQDTLARLAGDQFGLILVSEHNPAKVADFADAISKAIMVPINFANREIILTASVGL 660 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718 ASW + +++ +L +AELAMY AK GGN VE F+ + DR+ ++ DL A+E Sbjct: 661 ASWVDRQESATGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERK 720 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 EL +VY PI RL D E+ G EAL++W+HPK GNI SEF+ IAE +I + +F LE+ Sbjct: 721 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGNIPPSEFIPIAEASDLIGPLGMFALEQA 780 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 D++SW+ Q PIF+ IN++S LL+NEL + ++++++KT PSR+KL +ES+VM Sbjct: 781 TNDLMSWQHQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCQPSRLKLELTESMVM 840 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898 NPE++RL+L +L++ GI L LDDFGT S L+YL PFDT+K + +L+ S++K+ + Sbjct: 841 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDTIKLDKTLVRDSSDKKAIV 900 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 LRS+I MA+ ++ ++A+ I D EL +MGC+Y Q P+ S+L+LL++RFP Sbjct: 901 LRSVISMARELDMKVVAEGIESNEDAIELAKMGCNYGQSYLFGPPIPSESVLRLLRDRFP 960 Query: 959 LVKNT 963 L K Sbjct: 961 LTKRA 965 >gi|116250832|ref|YP_766670.1| GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255480|emb|CAK06556.1| putative transmembrane sensory box GGDEF/EAL domain protein [Rhizobium leguminosarum bv. viciae 3841] Length = 970 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 517/965 (53%), Positives = 696/965 (72%), Gaps = 2/965 (0%) Query: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60 ML + + + ++ + A EP+ IS D LDLT+ T IY NQGE F Sbjct: 6 MLPKSPSGRVIAVIAALFLAAFAFVAGVAQAAEPVKISRDDTALDLTATTEIYTNQGEAF 65 Query: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 QV TAA DGI RRIEV ASS H+GDWAVFALAN S+ QLER+IV PH+RLV S F P Sbjct: 66 QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 125 Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180 DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPG+V+TF+ E+STP LPQIYLWEPN Sbjct: 126 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGSVITFVAELSTPELPQIYLWEPNA 185 Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 YKDT+N+FTLYRGI++G+A LLA+FLTI ++V +SML T A+AW VLGYI +DFGFL Sbjct: 186 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 245 Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 KL+++ S + IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + + +A+LF ++ Sbjct: 246 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 305 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 Y P + A IAR++ A IIY G Y+RA+LL+PAW LI +W G W+ +T Sbjct: 306 IYDPSIAAGIARLSFALTATMGLLLIIYLGFNRYDRAILLVPAWALILVWLFGAWLTVTG 365 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 RLDNDIIQPAL GGLVLIV+LIGFTV+QH A G + QG+FSD ERQSLA+ GSGD+VWD Sbjct: 366 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAYQQGLFSDLERQSLALTGSGDMVWD 425 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 WD+ RDRV T PD++ LGL+ G+MHG RNWLP +H +DRD FR LD + +RRGRL Sbjct: 426 WDVARDRVVTIPDVSIKLGLSQGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 485 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 +EFR+RA D FHW++IR RP+ SNG+I+R +G D+TEQK S+E +L +A DNLTG Sbjct: 486 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLHDALHDNLTG 545 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNRQ FLDRL ++L L+ D LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ Sbjct: 546 LPNRQVFLDRLQSVLALAPGGDTLRPTVMVIDIDRYKLVNDSLGVAAGDNILIALTRRLR 605 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 LLK D LARL+G++FG+IL+SE+N K+ADFA A+ K+I +PIN REI +TAS+G Sbjct: 606 RLLKPQDTLARLAGDQFGLILVSEHNPAKVADFADAISKAIMVPINFANREIILTASVGL 665 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718 ASW + +++ +L +AELAMY AK GGN VE F+ + DR+ ++ DL A+E Sbjct: 666 ASWVDRQESATGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERK 725 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 EL +VY PI RL D E+ G EAL++W+HPK GNI SEF+ IAE +I + +F LE+ Sbjct: 726 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGNIPPSEFIPIAEASDLIGPLGMFALEQA 785 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 D++SW+ Q PIF+ IN++S LL+NEL + ++++++KT PSR+KL +ES+VM Sbjct: 786 TNDLMSWQHQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCQPSRLKLELTESMVM 845 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898 NPE++RL+L +L++ GI L LDDFGT S L+YL PFDT+K + +L+ S++K+ + Sbjct: 846 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDTIKLDKALVRDSSDKKATV 905 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 LRS+I MA+ ++ ++A+ I D EL +MGC+Y Q P+ S+L+LL++RFP Sbjct: 906 LRSVIAMARELDMKVVAEGIESNEDAIELAKMGCNYGQSYLFGPPIPSESVLRLLRDRFP 965 Query: 959 LVKNT 963 L K Sbjct: 966 LTKRA 970 >gi|209548238|ref|YP_002280155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533994|gb|ACI53929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 965 Score = 952 bits (2462), Expect = 0.0, Method: Composition-based stats. Identities = 518/965 (53%), Positives = 691/965 (71%), Gaps = 2/965 (0%) Query: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60 ML + + + + + A EP+ IS D LDLT+ T IYVNQGE F Sbjct: 1 MLPKSPSGRVIAVIAALFLAAFALVAGAAQAAEPVKISRDDTALDLTATTEIYVNQGEAF 60 Query: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 QV TAA DGI RRIEV ASS H+GDWAVFALAN S+ QLER+IV PH+RLV S F P Sbjct: 61 QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 120 Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180 DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E+STP LPQIYLWEPN Sbjct: 121 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELSTPELPQIYLWEPNA 180 Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 YKDT+N+FTLYRGI++G+A LLA+FLTI ++V +SML T A+AW VLGYI +DFGFL Sbjct: 181 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 240 Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 KL+++ S + IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + + +A+LF ++ Sbjct: 241 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 300 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 Y P + A IAR++ A I+Y G Y+RA+LL+PAW L +W G WM +T Sbjct: 301 IYDPSIAAGIARLSFALTAATGLLLIVYLGFNRYDRAILLVPAWALTLVWLFGAWMTVTG 360 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 RLDNDIIQPAL GGLVLIV+LIGFTV+QH A G F QG+FSD ERQSLA+ GSGD+VWD Sbjct: 361 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWD 420 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 WD+ RDRV T PD++ LGL+ G+MHG RNWLP +H +DRD FR LD + +RRGRL Sbjct: 421 WDVARDRVVTIPDVSAKLGLSPGTMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 480 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 +EFR+RA D FHW++IR RP+ SNG+I+R +G D+TEQK S+E +L +A DNLTG Sbjct: 481 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSIERLLHDALHDNLTG 540 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNRQ FLDRL +L L+ D L+PTVMVIDID+YK +ND LG+A GD++L++LTRR+ Sbjct: 541 LPNRQVFLDRLQAVLALAPGGDTLKPTVMVIDIDRYKLVNDALGVAAGDNILIALTRRLR 600 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 LLK D LARL+G++FG+IL+SE+N K+ADFA A+ K+I +PIN REI +TASIG Sbjct: 601 RLLKPQDTLARLAGDQFGLILVSEHNPAKVADFADAISKAIMVPINFANREIILTASIGL 660 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718 SW + +++ +L +AELAMY AK GGN VE F+ + DR+ ++ DL A+E Sbjct: 661 TSWVDRQESATGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERK 720 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 EL +VY PI RL D E+ G EAL++W+HPK GNI SEF+ IAE +I + +F LE+ Sbjct: 721 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGNIPPSEFIPIAESSDLIGPLGMFALEQA 780 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 D++SW++Q PIF+ IN++S LL+NEL + ++++++KT PSR+KL +ES+VM Sbjct: 781 TNDLMSWQNQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCQPSRLKLELTESMVM 840 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898 NPE++RL+L +L++ GI L LDDFGT S L+YL PFD +K + +L+ ++K+ + Sbjct: 841 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDMIKLDKALVRDGSDKKATV 900 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 LRS+I MA+ +E ++A+ I D EL +MGC Y Q P+ S+L+LL+ERFP Sbjct: 901 LRSVIAMARELEMKVVAEGIESNEDAIELAKMGCSYGQSYLFGPPIASESVLRLLRERFP 960 Query: 959 LVKNT 963 L K Sbjct: 961 LTKRA 965 >gi|15888127|ref|NP_353808.1| hypothetical protein Atu0784 [Agrobacterium tumefaciens str. C58] gi|15155761|gb|AAK86593.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 971 Score = 946 bits (2445), Expect = 0.0, Method: Composition-based stats. Identities = 505/963 (52%), Positives = 681/963 (70%), Gaps = 2/963 (0%) Query: 3 LSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQV 62 S R + L + S S+A EP+ IS D LDLT+ T IY NQGE FQV Sbjct: 8 PCLSKRLAAIALAVPFFLLFVLFASHSYAFEPVKISRDDTALDLTATTDIYANQGEAFQV 67 Query: 63 FTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDL 122 TA DGI RRIEV ASS H+GDWAVFALAN S+ QLER+IV PH+RLV S F PDL Sbjct: 68 STAPGPDGIRRRIEVRASSEDHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWPDL 127 Query: 123 GSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYK 182 GS+RII++TPSEGF+LDR P+ D+DVFRIT+NPG+V+TF+ E+STP LPQIYLWEP YK Sbjct: 128 GSQRIIAITPSEGFALDRQPSPDADVFRITLNPGSVITFVAELSTPQLPQIYLWEPEAYK 187 Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 DT+N+FTLYRGI++G+A LLA+ LTI ++V +S+L + A+AW VL YI +DFGFL KL Sbjct: 188 DTINAFTLYRGIVLGIAGLLAVLLTILFVVKGTSVLPASAALAWAVLAYICVDFGFLEKL 247 Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 + + S + IWRA +E+AL+SS ++FLF YL+ NRWHA +GY TF+ + +A+LF ++ Y Sbjct: 248 ITVTSSDQRIWRAGAEVALASSFVVFLFTYLNLNRWHAHLGYATFAWVVGLALLFGVAIY 307 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362 P V + IAR++ A IIY G Y+RA+LL+P+W LI +W G W+ +T +L Sbjct: 308 DPSVASGIARVSFALTATAGIALIIYLGFNRYDRAILLVPSWALILVWLFGSWLTVTGQL 367 Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 DNDI+QPAL GGLVLIV+LIGFTVIQH A + QG+FSD ERQSLA+ GSGD VWDWD Sbjct: 368 DNDIVQPALGGGLVLIVLLIGFTVIQHAFAGSAYQQGLFSDLERQSLALTGSGDTVWDWD 427 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + RDR+ TTPDI+ LGL G+MHG RNWLP +H +DRD F+ LD + +R+GRL +E Sbjct: 428 VTRDRIVTTPDISNRLGLEPGTMHGAARNWLPRLHPDDRDRFKATLDVLLDHRKGRLNHE 487 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 FR+RA D FHW+ IR RP+ SNG+I+R +G DITEQK S+E +L +A DNLTG+P Sbjct: 488 FRIRAEDGHFHWLQIRARPVLGSNGEIIRCVGTITDITEQKNSVERLLQDAMNDNLTGLP 547 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NRQ FLDRL +IL+LS + +RPTVM IDID+YK +ND LGIA GD++L++LTRR+ L Sbjct: 548 NRQVFLDRLQSILNLSPDSEGVRPTVMAIDIDRYKLVNDTLGIAAGDNILIALTRRLRRL 607 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 LK D LARL G+ FG+IL SE + ++ADFA A+ K+I +PIN REI +TASIG S Sbjct: 608 LKPQDTLARLGGDEFGLILTSERDPQRVADFADAVNKAIMVPINFANREIILTASIGLVS 667 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSEL 720 W + +++ +L +AELAMY AK GGN VE FR + +DR+ ++ DL A+E EL Sbjct: 668 WIDQQESAAGLLSDAELAMYRAKRAGGNRVEPFRPAFRTSGTDRLQMESDLRRAIERKEL 727 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y PI++L D + G EAL++W+HPK GNI SEF+ IAE +I+ + +F LER A Sbjct: 728 SLAYQPIVKLDDGALAGFEALMRWEHPKRGNIPPSEFIPIAEASGLIEPLGMFALERAAT 787 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 D++ W+ + PIFI +NI+S LL+NEL ++ ++++T +P ++KL +ESVVM N Sbjct: 788 DLMDWQHAIDKMPIFISVNISSAQLLNNELYNDVRGMLTRTRCNPQQLKLELTESVVMEN 847 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900 PE++RL+L +L++ G+SL +DDFGT S L+YL PFDT+K + +L+ +++KR +LR Sbjct: 848 PEQARLVLSKLKETGLSLAMDDFGTGYSSLAYLTRFPFDTIKLDKALVANTSDKRNVLLR 907 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 S+I MA+ ++ ++A+ I D EL RM C + Q +P+ ++ LKLL+ERF Sbjct: 908 SVIAMARALDMQVVAEGIETPEDAAELARMNCHFGQSFMFGTPVSGDAALKLLRERFQPT 967 Query: 961 KNT 963 K Sbjct: 968 KRA 970 >gi|325292168|ref|YP_004278032.1| sensory box/GGDEF family protein [Agrobacterium sp. H13-3] gi|325060021|gb|ADY63712.1| putative sensory box/GGDEF family protein [Agrobacterium sp. H13-3] Length = 971 Score = 944 bits (2441), Expect = 0.0, Method: Composition-based stats. Identities = 501/936 (53%), Positives = 674/936 (72%), Gaps = 2/936 (0%) Query: 30 FAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWA 89 +A EP+ IS D LDLT+ T IY NQGE FQV TA DGI RRIEV ASS H+GDWA Sbjct: 35 YAFEPVKISRDDTALDLTATTDIYANQGEAFQVSTAPGPDGIRRRIEVRASSTDHQGDWA 94 Query: 90 VFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVF 149 VFALAN S+ QLER+IV PH+RLV S F PDLGS+RII++TPSEGF+LDR P+ D+DVF Sbjct: 95 VFALANVSEEQLERVIVAPHFRLVNSKLFWPDLGSQRIIAITPSEGFALDRQPSPDADVF 154 Query: 150 RITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIF 209 RIT+NPG+V+TF+ E+STP LPQIYLWEP YKDT+N+FTLYRGI++G+A LLA+ LTI Sbjct: 155 RITLNPGSVITFVAELSTPQLPQIYLWEPEAYKDTINAFTLYRGIVLGIAGLLAVLLTIL 214 Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269 ++V +S+L + A+AW VL YI +DFGFL KL+ + S + IWRA +E+AL+SS ++FL Sbjct: 215 FVVKGTSVLPASAALAWAVLAYICVDFGFLEKLITVTSSDQRIWRAGAEVALASSFVVFL 274 Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329 F YL+ NRWHA +GY TF+ + +A+LF ++ + P V + IAR++ A IIY Sbjct: 275 FTYLNLNRWHAHLGYATFAWVVGLALLFGVAIFDPSVASGIARVSFALTATAGIALIIYL 334 Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389 G Y+RA+LL+P+W LI +W G W+ +T +LDNDI+QPAL GGLVLIV+LIGFTVIQH Sbjct: 335 GFNRYDRAILLVPSWALILVWLFGSWLTVTGQLDNDIVQPALGGGLVLIVLLIGFTVIQH 394 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 A + QG+FSD ERQSLA+ GSGD VWDWD+ RDR+ TTPDI+ LGL G+MHG Sbjct: 395 AFAGSAYQQGLFSDLERQSLALTGSGDTVWDWDVTRDRIVTTPDISNRLGLEPGTMHGAA 454 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 RNWLP +H +DRD F+ LD + +R+GRL +EFR+RA D FHW+ IR RP+ SNG+I Sbjct: 455 RNWLPRLHPDDRDRFKATLDVLLDHRKGRLNHEFRIRAEDGHFHWLQIRARPVLGSNGEI 514 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 +R +G DITEQK S+E +L +A DNLTG+PNRQ FLDRL +IL+LS D +RPTVM Sbjct: 515 IRCVGTITDITEQKNSVERLLQDAMNDNLTGLPNRQVFLDRLQSILNLSPESDGVRPTVM 574 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 IDID+YK +ND LGIA GD++L++LTRR+ LLK D LARL G+ FG+IL SE + + Sbjct: 575 AIDIDRYKLVNDTLGIAAGDNILIALTRRLRRLLKPQDTLARLGGDEFGLILTSERDPQR 634 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +ADFA A+ K+I +PIN REI +TASIG SW + +++ +L +AELAMY AK GG Sbjct: 635 VADFADAVNKAIMVPINFANREIILTASIGLVSWIDQQESAAGLLSDAELAMYRAKRAGG 694 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N VE FR + +DR+ ++ DL A+E EL L Y PI++L D + G EAL++W+HP Sbjct: 695 NRVEPFRPAFRTSGTDRLQMESDLRRAIERKELSLAYQPIVKLDDGALAGFEALMRWEHP 754 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 K GNI SEF+ IAE +I+ + +F LER A D++ W+ PIFI +NI+S LL+ Sbjct: 755 KRGNIPPSEFIPIAEASGLIEPLGMFALERAATDLMDWQHSIEKMPIFISVNISSAQLLN 814 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 NEL ++ ++++T +P ++KL +ESVVM NPE++RL+L +L++ GISL +DDFGT Sbjct: 815 NELYNDVRGMLTRTRCNPQQLKLELTESVVMENPEQARLVLSKLKETGISLAMDDFGTGY 874 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 S L+YL PFDT+K + +L+ +++KR +LRS+I MA+ ++ ++A+ I D EL Sbjct: 875 SSLAYLTRFPFDTIKLDKALVANTSDKRNVLLRSVIAMARALDMQVVAEGIETPEDAAEL 934 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 +RM C + Q +P+ ++ LKLL+ERF K Sbjct: 935 SRMNCHFGQSFLFGTPVSGDAALKLLRERFQPTKRA 970 >gi|153007941|ref|YP_001369156.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC 49188] gi|151559829|gb|ABS13327.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ochrobactrum anthropi ATCC 49188] Length = 965 Score = 943 bits (2437), Expect = 0.0, Method: Composition-based stats. Identities = 450/946 (47%), Positives = 658/946 (69%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 FL L++FL V + AIEPI IS D LDL+ + N+GE QV TA DGI RR Sbjct: 15 FLALMVFLTVSVVQASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTAPGPDGIVRR 74 Query: 75 IEVSA-SSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV A + + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQADQNSKASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+VVTF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVVTFVAELSSHNLPQLYLWEPEAYKDAVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMEITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + + + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWVLGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V+ I Y +KGY+RAV+LIPAW+L IW +G WM ++ RLDNDI+QPAL G Sbjct: 315 SLALTVVSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLLGAWMTVSGRLDNDIVQPALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGALQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTANSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL+ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSN 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV +IDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 VMNMARGESNLHPTVFIIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE++ +IA FA A+R+++ PI +REI +TAS+G +WT + T+ + Sbjct: 615 SDQFGLLLASESDPGRIASFAEALRQAVRAPIAYAKREIVLTASVGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAMY AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDAELAMYQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLD 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + I G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTIAGFEALMRWEHPRRGAISPSEFIPIAENSGLIIQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSTHVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKATLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESESDALQLRQMGCEYVQSFMFGQPTSRDEATRMIREQL 960 >gi|319784685|ref|YP_004144161.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170573|gb|ADV14111.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 962 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 452/957 (47%), Positives = 663/957 (69%), Gaps = 2/957 (0%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 LR+ A ++ L LW S +FA+EPI I+ D LDL+ IY NQGE+FQV TA Sbjct: 5 LRNGPLFAIVLATLLTLWAASSAFAVEPIKIARDDVALDLSGAVEIYRNQGENFQVSTAP 64 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RRIEV A+ R GDWAVFALANT+D QL+RLIV PH+RLV S F PDLGS R Sbjct: 65 GPDGIVRRIEVEANDARSTGDWAVFALANTTDQQLDRLIVAPHFRLVNSGIFWPDLGSTR 124 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I ++TPSEGF+LDR + D+DVFR+T+NPG V+TFI E+++P LPQ+YLW+P YKD+VN Sbjct: 125 IAAITPSEGFALDRQTSPDADVFRVTLNPGTVITFIAELASPKLPQVYLWDPESYKDSVN 184 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 S+TL+RGI+IG+A LLA+FLTI ++V +SM T A+AW VL YI +DFGFL+K++ + Sbjct: 185 SYTLFRGIVIGIAGLLALFLTILFVVKGTSMFPATAALAWAVLAYICVDFGFLNKVIEIS 244 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 G +WRA +E+AL+ + ++FLF YL+ NRWH Y I + ++ ++ P V Sbjct: 245 PGNEQMWRAGTEVALAGTFVVFLFAYLNLNRWHGHFSYGALVWILGLVLIAGVAIVDPAV 304 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 A IAR++ A+ L II+ G++GY+RA++L+P+W+++ +W G WMAIT LDNDI Sbjct: 305 AAGIARLSFAATALTGLGLIIFLGIRGYDRAIMLVPSWVMVLLWLCGSWMAITGMLDNDI 364 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 QPAL GGL+LI++LIGFTV+QH A G QG+FSD ERQ+LAV GSGD VWDWD++RD Sbjct: 365 AQPALGGGLILIILLIGFTVMQHAFAGGALHQGLFSDLERQALAVAGSGDTVWDWDVLRD 424 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 RV T PD++ LGLA S+ G RNWLP +H +DRD FRT LD + +RRGR+ FR+R Sbjct: 425 RVVTKPDVSIQLGLAPNSLGGAARNWLPVLHADDRDTFRTTLDVVLEHRRGRVSQNFRLR 484 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 AD +HW +R RP+ S+G+++R +G D+TEQKKS E +L +A DNLTG+PNR+ Sbjct: 485 GADGHYHWFSLRARPVIGSDGEVIRCVGTMVDVTEQKKSEERLLHDAVHDNLTGLPNREL 544 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 ++RL I+ ++ T++ +RPTV VIDID++K++ND LGI+ GD +L+++ RR+ LLK Sbjct: 545 LMNRLEAIISIARTEEKVRPTVFVIDIDRFKQVNDGLGISAGDTILLTIARRLHRLLKPK 604 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D L+R +G++F ++L+SE + +IA A A++ +I PI +REI +TASIG +W S Sbjct: 605 DSLSRFAGDQFALMLLSEQDPARIAAVADAIKHAINNPITFAKREIVLTASIGLITWNSP 664 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVY 724 ++++ +M+K+AELAM+ AK GG+ +E FR + +DR+ + DL A+E E L Y Sbjct: 665 QMSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFESDLRRAIERREFTLAY 724 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D + G EAL++WDHP+ G I ++F+ +AE +I + LF +++ A D+ S Sbjct: 725 QPIVRLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIVQLGLFAMQQAAEDLAS 784 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W+ Q P+ + +N++S+ L+ +L ++++I++ P +L +ES+VM NPE++ Sbjct: 785 WQKQIGDAPLSVSVNLSSRQLIRRDLVSDVRSVIARANLKPRCFRLELTESLVMDNPEQT 844 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIP 904 +L +L+++GI L+LDDFGT S L+YL PFDT+K + S + +T KR +L+S++ Sbjct: 845 AHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFVDDNTPKRAVLLKSMVN 904 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 MA + +++A+ I E D EL +MGC+Y+Q +P+ + +LK LKE++PL + Sbjct: 905 MAHELGLSVVAEGISDESDALELRQMGCEYVQSFMFGAPMPGDQVLKTLKEQYPLTQ 961 >gi|110633114|ref|YP_673322.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Mesorhizobium sp. BNC1] gi|110284098|gb|ABG62157.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Chelativorans sp. BNC1] Length = 949 Score = 939 bits (2427), Expect = 0.0, Method: Composition-based stats. Identities = 453/949 (47%), Positives = 673/949 (70%), Gaps = 2/949 (0%) Query: 16 LILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRI 75 ++L L L+++ +P+FA+EPI IS D LDL+ I+ +QGE+FQV TA DGI RRI Sbjct: 1 MLLWLVLVFVAAPAFAVEPIKISREDVALDLSQAVEIHRDQGENFQVSTAPGADGIVRRI 60 Query: 76 EVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEG 135 EV A R GDWAVFALANT+D QL+RLIV PH+RLVGS PDLGS+RI ++TPSEG Sbjct: 61 EVEAQDSRSTGDWAVFALANTTDEQLDRLIVAPHFRLVGSGIIWPDLGSQRIAAITPSEG 120 Query: 136 FSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGII 195 F+LDR P+SD+D F +T+NPG VVTF+ E+S+PNLPQIYLW+P YKDTVNS+TL+RGI+ Sbjct: 121 FALDRQPSSDADEFLVTLNPGTVVTFVAELSSPNLPQIYLWDPAAYKDTVNSYTLFRGIV 180 Query: 196 IGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRA 255 IG+A LLA+FLT+ ++V +SM T A+AW +L YISIDFGFLS+++++ G +WRA Sbjct: 181 IGIAGLLALFLTVLFVVKGTSMFPATAALAWAILAYISIDFGFLSRIIDISPGNEQLWRA 240 Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315 +E+AL+++ ++FLF YL+ RWH Y T + I + I+ ++ + P + A IAR +L Sbjct: 241 GTEVALAATFVVFLFAYLNLARWHNHFSYGTLAWILVLVIIAGVAVFDPPIAAGIARFSL 300 Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375 A+ + I+Y GM+GY+RA++L+P+W+++ +W G WMA+T L+NDI+QPA+ GGL Sbjct: 301 AATAVIGLGLIVYMGMQGYDRAIMLVPSWLMVLVWLTGAWMAVTGTLNNDILQPAISGGL 360 Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 +LIV+LIGFTV+QH L+ QG+FSD ERQ+LA+ GSGD+VWDWD++RDRVTT PDI+ Sbjct: 361 ILIVLLIGFTVMQHALSGSAIFQGLFSDMERQALAISGSGDVVWDWDVLRDRVTTKPDIS 420 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 LGLA+ ++HGP R+WLP +H +DRD FRT LD + +RRGR+ FR+R AD +HW+ Sbjct: 421 KQLGLAANTLHGPARSWLPLLHSDDRDTFRTTLDMVLEHRRGRIAQNFRLRGADGHYHWL 480 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 +R RP+ S+G+++R +G D+TEQKK+ E +L +A DNLTG+PNR+ FL+RL + Sbjct: 481 SLRARPVVGSDGEVIRCVGTMVDVTEQKKAEERLLHDAVHDNLTGLPNRELFLNRLDATI 540 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 ++ + +RPTV+VIDID++K +ND LGI+ GD +L+++ RR+ LLK D L+R++G+ Sbjct: 541 AMAGKERKIRPTVLVIDIDRFKHVNDELGISAGDTILLTIARRLHRLLKPGDALSRVAGD 600 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 +F ++L+SE +IA A A+R +I PI +REI +TASIG SWT+ + ++ EM+K Sbjct: 601 QFAVMLLSEQEPAQIAAIADAVRLAIRSPITFAKREIILTASIGLVSWTAVQASAEEMIK 660 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AELAMY AK GG+ +E FR + DR+ ++ DL AV+ EL + Y PI+RL D Sbjct: 661 DAELAMYQAKRFGGDRIEPFRPAFRSIGTDRLQMESDLRRAVDRKELRVAYQPIVRLEDG 720 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 + G EAL++WDHP+ G I ++F+ IAE +I + LF +++ A D+ SW+ Q P Sbjct: 721 TVAGFEALLRWDHPRRGTIPPADFIPIAESSGLIVQLGLFAMQQAAEDLYSWQKQLGDVP 780 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 +F+ +N++S+ + +L +++++++ P +L +ESVVM NPE+S +L +L++ Sbjct: 781 LFMSVNLSSRQFIRRDLVGDVRSIVARANIKPRCFRLELTESVVMDNPEQSSHVLAKLKQ 840 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI 913 +GI L+LDDFGT S LSYL PFDT+K + + + + K +L+S+I MA ++ ++ Sbjct: 841 LGIGLSLDDFGTGYSSLSYLTRFPFDTIKIDKTFLNNPSSKGNVLLKSMITMAHDLGLSV 900 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 +A+ + E D+ +L +MGC+Y Q ++ +P S LKLL E+ P+ + Sbjct: 901 VAEGVTDEHDLSQLRQMGCEYGQSFYLGAPSDAESCLKLLTEQNPVTAS 949 >gi|150395757|ref|YP_001326224.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae WSM419] gi|150027272|gb|ABR59389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sinorhizobium medicae WSM419] Length = 970 Score = 938 bits (2426), Expect = 0.0, Method: Composition-based stats. Identities = 505/970 (52%), Positives = 690/970 (71%), Gaps = 9/970 (0%) Query: 3 LSNSLRSHFEKAFLILVLFLLWMV-------SPSFAIEPINISSSDRVLDLTSITRIYVN 55 + + H A + + + +V + A+EP+ IS D LDLT+ T IY Sbjct: 1 MPLPRKPHAWPATWLTAILVALVVFALGFGGGVAHALEPVKISREDTALDLTATTEIYSG 60 Query: 56 QGEDFQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGS 115 +G+ FQV TA DGI RRIEV +S+ H+GDWAVFALAN S+ QLER+IV PH+RLV S Sbjct: 61 RGDAFQVSTAPGTDGIVRRIEVRSSTESHQGDWAVFALANVSEEQLERVIVAPHFRLVNS 120 Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175 F PDLGS+RI+S+TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E++TP LPQIYL Sbjct: 121 KLFWPDLGSQRILSITPSEGFALDRQPSEEADVFRITLNPGAVITFVAELTTPELPQIYL 180 Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISID 235 W+P+ YKDTVN+FTLYRGI++G+A LLA+FLTI ++V +SML T A+AW VL YI +D Sbjct: 181 WQPDAYKDTVNAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLAYICVD 240 Query: 236 FGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAI 295 FGFLSKL+ + + + IWRA +E+ L++ L++FLF YL+ NRWH +GY T + I + + Sbjct: 241 FGFLSKLITVTADDERIWRAGTEVFLAAGLVVFLFTYLNLNRWHQHLGYATLAWILGLGL 300 Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 LF ++ Y P + + IAR++ A I Y G Y+RA+LL+PAW+LI +W G W Sbjct: 301 LFGVAVYDPAIASGIARLSFALTATVGILLIAYLGFNRYDRAILLVPAWLLILVWLFGAW 360 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 +A+T +L NDI+QPAL GGLVLIV+LIGFTV+QH A G + QG+FSD ERQ+LA+ GSG Sbjct: 361 LAVTGQLANDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAYQQGLFSDLERQALALTGSG 420 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 D VWDWD+ RDRV T PDI+ LGL+ G+M+GP+RNWLP +H +DRD FR LD + +R Sbjct: 421 DTVWDWDVARDRVVTIPDISHQLGLSLGTMNGPVRNWLPRLHPDDRDRFRATLDVLLEHR 480 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 RGRL +EFRVRA D +HW+ IR RP+ +NG+I+R +G DITEQ+ S+E +L NA Sbjct: 481 RGRLNHEFRVRAEDGHYHWLSIRARPVLGANGEIIRCVGTIIDITEQRNSVERLLHNALL 540 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 DNLTG+PNRQ FLDRL IL + +RPTV+ IDID+YK++ND+LGIA GD++L++L Sbjct: 541 DNLTGLPNRQVFLDRLQAILLMGDGSSPIRPTVLAIDIDRYKQVNDMLGIAAGDNILIAL 600 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 TRR+ LL+ D LARL G++FG+IL+SE + KIADFA A+ K+I +P+N REI +T Sbjct: 601 TRRLRRLLRPQDTLARLGGDQFGLILMSERDPAKIADFADAISKAIMVPLNYGNREINLT 660 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713 ASIG +W + +++ +L +AELAM+ AK GGN VE FR + SDR+ ++ DL Sbjct: 661 ASIGLVAWLDQEQSAAGLLDDAELAMFRAKKAGGNRVEPFRPAFRTSGSDRLQLETDLKR 720 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+E EL LVY PI+RL D EI G EAL++W+HPK GNIS +EF+ IAE +I + LF Sbjct: 721 AMERKELSLVYQPIVRLSDAEIAGFEALMRWEHPKRGNISPTEFIPIAENSELISHLGLF 780 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 ++ D+ W+ Q PIF+ IN++S LL+NEL + M+A++SK+ PS+IK+ + Sbjct: 781 AFDKATSDLAEWQTQTGDLPIFVSINLSSAQLLNNELYDDMRAILSKSRCDPSQIKMELT 840 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893 ES+VM NPE++RL+L +LR+ G+ L LDDFGT S LSYL PFDT+K + +L+ ++ Sbjct: 841 ESLVMENPEQARLVLEKLREAGLRLALDDFGTGHSSLSYLTRFPFDTIKIDKALVRDPSD 900 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 KR ILRS+I MA+ ++ ++A+ I E D +L +MGCDY Q P+G SIL+LL Sbjct: 901 KRAVILRSVITMARELDMRVVAEGIESEEDAIQLAQMGCDYGQSFLFGPPVGSESILRLL 960 Query: 954 KERFPLVKNT 963 KERFPL+K Sbjct: 961 KERFPLMKRA 970 >gi|256060615|ref|ZP_05450781.1| diguanylate cyclase [Brucella neotomae 5K33] gi|261324611|ref|ZP_05963808.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33] gi|261300591|gb|EEY04088.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33] Length = 964 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 447/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KLV + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLVQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 IKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|163760346|ref|ZP_02167428.1| hypothetical protein HPDFL43_03546 [Hoeflea phototrophica DFL-43] gi|162282297|gb|EDQ32586.1| hypothetical protein HPDFL43_03546 [Hoeflea phototrophica DFL-43] Length = 976 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 468/942 (49%), Positives = 665/942 (70%), Gaps = 2/942 (0%) Query: 24 WMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIR 83 + + AIEP+ I D LDLT+ T IY +GE FQV TAA DGI RRIEV A+S + Sbjct: 35 FSAPAAQAIEPVKIGRDDTALDLTATTEIYNQRGEAFQVSTAAGADGIVRRIEVRANSAQ 94 Query: 84 HRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPN 143 H GDWAVFALAN +D Q++RLIV PH+RLV S PDLGS RI+ +TPSEGF+LDR+P+ Sbjct: 95 HSGDWAVFALANVTDEQIDRLIVAPHFRLVASGLLWPDLGSARILGITPSEGFALDRVPS 154 Query: 144 SDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLA 203 S+ DVFRIT+NPG V+TF+ E++ P LPQIYLWEP YKDTVN++TLYRGI++G+A LLA Sbjct: 155 SEDDVFRITLNPGTVITFVAELAAPELPQIYLWEPEAYKDTVNAYTLYRGIVLGIAGLLA 214 Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263 +FLTI ++V +SML T A+AW VL Y+S+DFGFLSKL+ + G+ IWRA +E+ L++ Sbjct: 215 VFLTILFVVKGTSMLPATAALAWAVLAYVSVDFGFLSKLILITPGDERIWRAGTEVLLAT 274 Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 L++FLF YL+ NRWH + Y+T + I + LF ++ Y P V + IARI+ A+ + Sbjct: 275 GLVVFLFTYLNLNRWHTNLSYVTVAWILGLGALFAVAIYDPPVASGIARISFAATAIAGV 334 Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 I Y G Y+RAV+LIP W LI W G W+ +T +L NDI+QPAL GGLVLIV+L+G Sbjct: 335 ALIAYLGFNRYDRAVMLIPTWALILCWLFGAWVTVTGQLANDIVQPALGGGLVLIVLLMG 394 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 FTV+QH A G + QG+FSD ERQ++A+ GSGD VWDWD+ RDRV T+PD++ LGL+ G Sbjct: 395 FTVMQHAFAGGAYHQGLFSDMERQAMALAGSGDTVWDWDVTRDRVVTSPDLSPQLGLSPG 454 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ GP RNWLP +H +DRD FRT LD + +R+GRL ++FR+RA D +HWM +R RP+ Sbjct: 455 ALAGPARNWLPRVHADDRDRFRTTLDVLLEHRKGRLNHQFRMRAEDGHYHWMALRARPVI 514 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 SNG+++R +G D+TEQK S + +L +A DNLTG+PNRQ F+DRL T++ ++A Sbjct: 515 GSNGEVIRCVGTIIDVTEQKTSEDRLLHDAVHDNLTGLPNRQLFVDRLQTMISIAAQSPE 574 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +RP+V +IDID++K++ND LG++VGD +L++LTRR+ LLK D LAR+SG++FG++L+S Sbjct: 575 VRPSVFMIDIDRFKQVNDKLGMSVGDTILLALTRRLKRLLKPLDTLARISGDQFGLVLVS 634 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 E +++K+A A A+ K+I+ PI+ ++I +TASIG +W S +++K+AELAMY Sbjct: 635 EQDAVKVAALAEAISKAISAPIDFAGQDIRLTASIGLVTWVESDAQPEDLIKDAELAMYQ 694 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK GGN +E FR + DR ++ DL A+E EL LVY PI+ L D EI G EAL Sbjct: 695 AKRFGGNRIEPFRPAFRTVGSDRQRLESDLRRALERKELTLVYQPIVELKDAEIAGFEAL 754 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+ PK G + SEF+ +AE +I + ++ L+R A D+ W++ P+F+ +N++ Sbjct: 755 LRWEDPKRGTVPPSEFIPVAETSDLILELGMYALKRAADDLAIWQETIGEVPVFMSVNLS 814 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 S LL ++LC + IS + PS+ +L +ES+VM NP+++ + L RL + GI LTLD Sbjct: 815 SAQLLKSDLCNDVIKAISASRCEPSQFRLELTESLVMHNPQQALMTLARLSEAGIGLTLD 874 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 DFGT S L+YL PF T+K + SL+ TEK ++RSI+ +AK+++ +++A+ + E Sbjct: 875 DFGTGHSSLAYLTRFPFQTIKIDKSLVIDQTEKGGILIRSIVNLAKHLDMSVVAEGVASE 934 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D +L+ MGCDY Q P+G +S+ KLLKERFP+ K++ Sbjct: 935 DDAIQLSEMGCDYGQSFLFGPPIGADSVQKLLKERFPVAKSS 976 >gi|15964671|ref|NP_385024.1| putative transmembrane signal peptide protein [Sinorhizobium meliloti 1021] gi|307304249|ref|ZP_07584001.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Sinorhizobium meliloti BL225C] gi|307320554|ref|ZP_07599969.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Sinorhizobium meliloti AK83] gi|15073849|emb|CAC45490.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] gi|306893830|gb|EFN24601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Sinorhizobium meliloti AK83] gi|306902717|gb|EFN33310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Sinorhizobium meliloti BL225C] Length = 970 Score = 932 bits (2410), Expect = 0.0, Method: Composition-based stats. Identities = 505/957 (52%), Positives = 687/957 (71%), Gaps = 2/957 (0%) Query: 9 SHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI 68 ++V L + A+EP+ IS D LDLT+ T IY +G+ FQV TA Sbjct: 14 RLAAFLVALVVFALGLGGGVAHALEPVKISREDTALDLTATTEIYSGRGDAFQVSTAPGT 73 Query: 69 DGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRII 128 DGI RRIEV +S+ H+GDWAVFALAN S+ QLER+IV PH+RLV S F PDLGS+RI+ Sbjct: 74 DGIVRRIEVRSSTENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWPDLGSQRIL 133 Query: 129 SVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSF 188 S+TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E++TP LPQIYLW+P+ YKDTVN+F Sbjct: 134 SITPSEGFALDRQPSEEADVFRITLNPGAVITFVAELTTPELPQIYLWQPDAYKDTVNAF 193 Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248 TLYRGI++G+A LLA+FLTI ++V +SML T A+AW VL YI +DFGFLSKL+ + + Sbjct: 194 TLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLAYICVDFGFLSKLITVTAD 253 Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308 + IWRA +E+ L++ L+IFLF YL+ NRWH +GY T + I + +LF ++ Y P + + Sbjct: 254 DERIWRAGTEVFLAAGLVIFLFTYLNLNRWHQHLGYATLAWILGLGLLFGVAVYDPAIAS 313 Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368 IAR++ A I Y G Y+RA+LL+PAW+LI +W G W+A+T +L NDI+Q Sbjct: 314 GIARLSFALTATVGIVLIAYLGFNRYDRAILLVPAWLLILVWLFGAWLAVTGQLANDIVQ 373 Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 PAL GGLVLIV+LIGFTV+QH + G + G+FSD ERQ+LA+ GSGD VWDWD+ RDRV Sbjct: 374 PALGGGLVLIVLLIGFTVMQHAFSGGAYQLGLFSDLERQALALTGSGDTVWDWDVARDRV 433 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 T PDI+ LGL+ G+M+GP+RNW+P +H +DRD FR LD + +RRGRL +EFRVRA Sbjct: 434 VTIPDISHQLGLSLGTMNGPVRNWVPRLHPDDRDRFRATLDVLLEHRRGRLNHEFRVRAE 493 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 D +HW+ IR RP+ +NG+I+R +G NDITEQ+ S+E +L NA DNLTG+PNRQ FL Sbjct: 494 DGHYHWLSIRARPVLGANGEIIRCVGTINDITEQRNSVERLLHNALLDNLTGLPNRQVFL 553 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 DRL IL + +++RPTV+ IDID+YK++ND+LGIA GD+VL++LTRR+ LL+ D Sbjct: 554 DRLQAILLMGDGSNSIRPTVLAIDIDRYKQVNDMLGIAAGDNVLIALTRRLRRLLRPQDT 613 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 LARL G++FG+IL+SE + KIADFA A+ K+I +P+N REI +TASIG SW + Sbjct: 614 LARLGGDQFGLILMSERDPAKIADFADAVSKAIMVPLNYGNREINLTASIGLVSWLDQEQ 673 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHP 726 +++ +L +AELAM+ AK GGN VE FR + SDR+ ++ DL A+E EL LVY P Sbjct: 674 SAAGLLDDAELAMFRAKKAGGNRVEPFRPAFRTSGSDRLQLEADLKRAMERKELSLVYQP 733 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I+RL D EI G EAL++WDHPK GNIS +EF+ IAE +I + LF ++ D+ W+ Sbjct: 734 IVRLSDAEIAGFEALMRWDHPKRGNISPTEFIPIAENSDLINQLGLFAFDKATSDLAEWQ 793 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 Q PIFI IN++S LL+NEL + M+A++SK+ P++IK+ +ES+VM NPE++RL Sbjct: 794 TQTGDLPIFISINLSSAQLLNNELYDDMRAILSKSRCDPAQIKMELTESLVMENPEQARL 853 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMA 906 +L +LR+ G+ L LDDFGT S LSYL PFDT+K + +L+ ++KR ILR++I MA Sbjct: 854 VLEKLREAGLRLALDDFGTGHSSLSYLTRFPFDTIKIDKALVRDPSDKRAVILRAVITMA 913 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + ++ ++A+ I E D +L +MGCDY Q P+G SIL+LLKERFPL+K Sbjct: 914 RELDMRVVAEGIESEEDAIQLAQMGCDYGQSFLFGPPVGSESILRLLKERFPLMKRA 970 >gi|163842762|ref|YP_001627166.1| diguanylate cyclase [Brucella suis ATCC 23445] gi|163673485|gb|ABY37596.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445] Length = 964 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 446/946 (47%), Positives = 649/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVTTFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|23501382|ref|NP_697509.1| sensory box protein [Brucella suis 1330] gi|148559584|ref|YP_001258498.1| diguanylate cyclase/phosphodiesterase [Brucella ovis ATCC 25840] gi|161618452|ref|YP_001592339.1| diguanylate cyclase [Brucella canis ATCC 23365] gi|254703830|ref|ZP_05165658.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|256368934|ref|YP_003106440.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM 4915] gi|260566916|ref|ZP_05837386.1| PAS domain-containing protein [Brucella suis bv. 4 str. 40] gi|261754481|ref|ZP_05998190.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella suis bv. 3 str. 686] gi|23347277|gb|AAN29424.1| sensory box/GGDEF domain/EAL domain protein [Brucella suis 1330] gi|148370841|gb|ABQ60820.1| diguanylate cyclase/phosphodiesterase domain 2 [Brucella ovis ATCC 25840] gi|161335263|gb|ABX61568.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365] gi|255999092|gb|ACU47491.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM 4915] gi|260156434|gb|EEW91514.1| PAS domain-containing protein [Brucella suis bv. 4 str. 40] gi|261744234|gb|EEY32160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella suis bv. 3 str. 686] Length = 964 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 446/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|265983636|ref|ZP_06096371.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella sp. 83/13] gi|306837796|ref|ZP_07470660.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] gi|264662228|gb|EEZ32489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella sp. 83/13] gi|306407137|gb|EFM63352.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] Length = 964 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 446/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDTILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|306842235|ref|ZP_07474898.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] gi|306287615|gb|EFM59062.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] Length = 964 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 445/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNTNASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ +VY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISIVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|306845109|ref|ZP_07477689.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] gi|306274524|gb|EFM56319.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] Length = 964 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 446/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ +VY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISIVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ SW++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFSWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|17987736|ref|NP_540370.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1 str. 16M] gi|225852017|ref|YP_002732250.1| GGDEF domain-containing protein [Brucella melitensis ATCC 23457] gi|256044195|ref|ZP_05447102.1| GGDEF domain protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113010|ref|ZP_05453907.1| GGDEF domain protein [Brucella melitensis bv. 3 str. Ether] gi|256264478|ref|ZP_05467010.1| PAS domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260563554|ref|ZP_05834040.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265990610|ref|ZP_06103167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella melitensis bv. 1 str. Rev.1] gi|265994442|ref|ZP_06106999.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3 str. Ether] gi|17983456|gb|AAL52634.1| diguanylate cyclase/phosphodiesterase domain 2 (eal) [Brucella melitensis bv. 1 str. 16M] gi|225640382|gb|ACO00296.1| GGDEF domain protein [Brucella melitensis ATCC 23457] gi|260153570|gb|EEW88662.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|262765555|gb|EEZ11344.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3 str. Ether] gi|263001394|gb|EEZ13969.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella melitensis bv. 1 str. Rev.1] gi|263094809|gb|EEZ18547.1| PAS domain-containing protein [Brucella melitensis bv. 2 str. 63/9] Length = 964 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 444/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + + GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASPLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRS++ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSVVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|254718655|ref|ZP_05180466.1| diguanylate cyclase [Brucella sp. 83/13] Length = 952 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 446/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 3 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 62 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 63 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 122 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 123 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 182 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 183 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 242 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 243 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 302 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 303 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 362 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 363 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 422 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 423 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDTILENRRGRIGQIFRLRANDGHYH 482 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 483 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 542 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 543 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 602 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 603 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 662 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 663 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 722 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 723 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 782 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 783 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 842 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 843 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 902 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 903 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 948 >gi|62289462|ref|YP_221255.1| sensory box protein [Brucella abortus bv. 1 str. 9-941] gi|82699388|ref|YP_413962.1| PAS domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023711|ref|YP_001934479.1| PAS domain protein [Brucella abortus S19] gi|237814949|ref|ZP_04593947.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|254688773|ref|ZP_05152027.1| PAS domain protein [Brucella abortus bv. 6 str. 870] gi|254693257|ref|ZP_05155085.1| PAS domain protein [Brucella abortus bv. 3 str. Tulya] gi|254696903|ref|ZP_05158731.1| PAS domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254729806|ref|ZP_05188384.1| PAS domain protein [Brucella abortus bv. 4 str. 292] gi|256257020|ref|ZP_05462556.1| PAS domain protein [Brucella abortus bv. 9 str. C68] gi|260545785|ref|ZP_05821526.1| PAS domain-containing protein [Brucella abortus NCTC 8038] gi|260754259|ref|ZP_05866607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella abortus bv. 6 str. 870] gi|260757479|ref|ZP_05869827.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella abortus bv. 4 str. 292] gi|260761304|ref|ZP_05873647.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella abortus bv. 2 str. 86/8/59] gi|260883284|ref|ZP_05894898.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str. C68] gi|261213506|ref|ZP_05927787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella abortus bv. 3 str. Tulya] gi|297247875|ref|ZP_06931593.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 5 str. B3196] gi|62195594|gb|AAX73894.1| sensory box/GGDEF domain/EAL domain protein [Brucella abortus bv. 1 str. 9-941] gi|82615489|emb|CAJ10463.1| PAS domain:GGDEF:PAS-associated C-terminal domain:PAC motif:EAL domain [Brucella melitensis biovar Abortus 2308] gi|189019283|gb|ACD72005.1| PAS domain protein [Brucella abortus S19] gi|237789786|gb|EEP63996.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|260097192|gb|EEW81067.1| PAS domain-containing protein [Brucella abortus NCTC 8038] gi|260667797|gb|EEX54737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella abortus bv. 4 str. 292] gi|260671736|gb|EEX58557.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella abortus bv. 2 str. 86/8/59] gi|260674367|gb|EEX61188.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella abortus bv. 6 str. 870] gi|260872812|gb|EEX79881.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str. C68] gi|260915113|gb|EEX81974.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella abortus bv. 3 str. Tulya] gi|297175044|gb|EFH34391.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 5 str. B3196] Length = 964 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 443/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + + GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASPLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ +L A+E E+ LVY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESELRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRS++ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSVVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|254707791|ref|ZP_05169619.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10] gi|254709625|ref|ZP_05171436.1| diguanylate cyclase [Brucella pinnipedialis B2/94] gi|254712959|ref|ZP_05174770.1| diguanylate cyclase [Brucella ceti M644/93/1] gi|254716687|ref|ZP_05178498.1| diguanylate cyclase [Brucella ceti M13/05/1] gi|256031118|ref|ZP_05444732.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1] gi|256159191|ref|ZP_05457004.1| diguanylate cyclase [Brucella ceti M490/95/1] gi|256254521|ref|ZP_05460057.1| diguanylate cyclase [Brucella ceti B1/94] gi|261218492|ref|ZP_05932773.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella ceti M13/05/1] gi|261221698|ref|ZP_05935979.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94] gi|261315277|ref|ZP_05954474.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella pinnipedialis M163/99/10] gi|261317157|ref|ZP_05956354.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella pinnipedialis B2/94] gi|261320658|ref|ZP_05959855.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella ceti M644/93/1] gi|265988195|ref|ZP_06100752.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis M292/94/1] gi|265997660|ref|ZP_06110217.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1] gi|260920282|gb|EEX86935.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94] gi|260923581|gb|EEX90149.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella ceti M13/05/1] gi|261293348|gb|EEX96844.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella ceti M644/93/1] gi|261296380|gb|EEX99876.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella pinnipedialis B2/94] gi|261304303|gb|EEY07800.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella pinnipedialis M163/99/10] gi|262552128|gb|EEZ08118.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1] gi|264660392|gb|EEZ30653.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis M292/94/1] Length = 964 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 444/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LA++G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAIIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++ R+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISWRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|227821119|ref|YP_002825089.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Sinorhizobium fredii NGR234] gi|227340118|gb|ACP24336.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Sinorhizobium fredii NGR234] Length = 971 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 499/962 (51%), Positives = 687/962 (71%), Gaps = 2/962 (0%) Query: 4 SNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVF 63 ++S V + A+EP+ IS D LDLT+ T IY +GE FQV Sbjct: 10 ASSTARLAAFLVAFAVFIFGVAGGVAHALEPVKISREDTALDLTATTEIYSGRGEAFQVS 69 Query: 64 TAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLG 123 TA DGI RRIEV +S+ H+GDWAVFALAN S+ QLER+IV PH+RLV S F PDLG Sbjct: 70 TAPGTDGIVRRIEVRSSTEHHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWPDLG 129 Query: 124 SRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKD 183 S+RI+S+TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E++TP LPQIYLW+P+ YKD Sbjct: 130 SQRILSITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELATPELPQIYLWQPDAYKD 189 Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243 TVN+FTLYRGI++G+A LLA+FLTI ++V +SML T A+AW VL YI +DFGFLSKL+ Sbjct: 190 TVNAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLAYICVDFGFLSKLI 249 Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 ++ +G+ IWRA +E+ L++ L+IFLF YL+ NRWH +GY T + I +A+LF ++ Y Sbjct: 250 SVTAGDERIWRAGTEVFLAAGLVIFLFTYLNLNRWHQHLGYATLAWILGLALLFGVAVYD 309 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363 P + + IAR++ A I Y G Y+RA+LL+PAW+LI +W G W+A+T +L Sbjct: 310 PAIASGIARLSFALTATVGIVLIAYLGFNRYDRAILLVPAWLLILVWLFGAWLAVTGQLA 369 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 NDI+QPAL GGLVLIV+LIGFTV+QH A G + QG+FSD ERQ+LA+ GSGD VWDWD+ Sbjct: 370 NDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAYQQGLFSDLERQALALTGSGDTVWDWDV 429 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 RDRV T PDI+ LGL+ G+M+GP+RNW+P +H +DRD FR LD + +RRGRL +EF Sbjct: 430 ARDRVVTIPDISHQLGLSLGTMNGPVRNWVPRLHPDDRDRFRATLDVLLEHRRGRLNHEF 489 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R RA D +HW+ IR RP+ +NG+I+R +G DITEQ+ S+E +L NA DNLTG+PN Sbjct: 490 RARAEDGHYHWLSIRARPVLGANGEIIRCVGTIVDITEQRNSVERLLQNALLDNLTGLPN 549 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 RQ FLDRL IL +S + +RPTV+ IDID+YK++ND+LGIA GD++L++LTRR+ LL Sbjct: 550 RQVFLDRLQAILLMSDGTNAVRPTVLAIDIDRYKQVNDLLGIAAGDNILIALTRRLRRLL 609 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 + D LARL G++FG+IL+SE + KIADFA A+ K+I +P+N REI +TASIG SW Sbjct: 610 RPQDTLARLGGDQFGLILMSERDPAKIADFADAVSKAIMVPLNYGNREINLTASIGLVSW 669 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELY 721 + +++ +L +AELAM+ AK GGN VE FR + SDR+ ++ DL A+E EL Sbjct: 670 LDQEQSAASLLDDAELAMFRAKKEGGNRVEPFRPAFRTSGSDRLQLEADLKRAIERKELS 729 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 LVY PI+RL D E+ G EAL++WDHPK GN+S +EF+ IAE +I + +F ++ D Sbjct: 730 LVYQPIVRLSDAEVAGFEALMRWDHPKRGNVSPTEFIPIAENSDIINQLGMFAFDQATSD 789 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 + W+ Q PIF+ IN++S LL++ L + ++A+++K P+++K+ +ES+VM NP Sbjct: 790 LSEWQIQTGDLPIFVSINLSSAQLLNSGLYDDVRAILNKNRCDPAKVKMELTESLVMENP 849 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRS 901 E++RL+L +LR+ G+ L LDDFGT S LSYL PFDT+K + +L+ ++KR +LRS Sbjct: 850 EQARLVLEKLREAGLRLALDDFGTGHSSLSYLTRFPFDTIKIDKALVRDPSDKRGVVLRS 909 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 +I MA+ ++ ++A+ I E D +L +MGCDY Q P+G SIL+LLKERFPL+K Sbjct: 910 VIAMARELDMRVVAEGIESEEDAIQLAQMGCDYGQSFLFGPPVGSESILRLLKERFPLMK 969 Query: 962 NT 963 Sbjct: 970 RA 971 >gi|326408511|gb|ADZ65576.1| GGDEF domain-containing protein [Brucella melitensis M28] gi|326538228|gb|ADZ86443.1| ggdef domain protein [Brucella melitensis M5-90] Length = 964 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 444/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLTVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + + GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASPLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRS++ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSVVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|294851857|ref|ZP_06792530.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella sp. NVSL 07-0026] gi|294820446|gb|EFG37445.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Brucella sp. NVSL 07-0026] Length = 964 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 445/946 (47%), Positives = 649/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+ ELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDVELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMKNPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|225626986|ref|ZP_03785025.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|260168249|ref|ZP_05755060.1| sensory box/GGDEF domain/EAL domain protein [Brucella sp. F5/99] gi|261757712|ref|ZP_06001421.1| PAS domain-containing protein [Brucella sp. F5/99] gi|225618643|gb|EEH15686.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|261737696|gb|EEY25692.1| PAS domain-containing protein [Brucella sp. F5/99] Length = 964 Score = 928 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 444/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAIHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LA++G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAIIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++ R+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISWRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + + G EAL++W+HP+ G IS SEF+ IAE +I + LF ++R A D+ +W++Q Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 +F+ +N++S L+ +L +++++S+ +P +KL +ESV+M NPE+S +L RL Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + +GI L+LDDFGT S L+YL PFD +K + S + G ++ +LRSI+ MA ++ Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ + + E D +L +MGC+Y+Q P + ++++E+ Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960 >gi|254472035|ref|ZP_05085436.1| PAS fold family protein [Pseudovibrio sp. JE062] gi|211959237|gb|EEA94436.1| PAS fold family protein [Pseudovibrio sp. JE062] Length = 962 Score = 920 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 378/955 (39%), Positives = 602/955 (63%), Gaps = 5/955 (0%) Query: 13 KAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGIS 72 +A L+ L L+ + S + A+E I + LDLT IY N + QV TA D DGI Sbjct: 6 QAVLLSALLLIVVASQALALEAIVVPKDVDALDLTGSVDIYPNTSKSIQVSTAPDSDGIV 65 Query: 73 RRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTP 132 RRIEV + WAVFAL+N + Q++RL+V P+Y++ G PDLG RRI+S+TP Sbjct: 66 RRIEVRSVDDTASS-WAVFALSNPGEEQIDRLLVAPYYKMTGGGVLVPDLGQRRIVSLTP 124 Query: 133 SEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYR 192 S+G R ++++D++RIT++PGA VTFI E++TP+LP+I LW+P YKD +N++TLYR Sbjct: 125 SQGIPPIRERSTEADIYRITLDPGANVTFIAEVNTPSLPEIRLWKPEAYKDNINAYTLYR 184 Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252 GI++G+A LLA+FLTI ++V + + T A+AW VL Y+ IDFGF + + G+ + Sbjct: 185 GIVLGIAGLLALFLTILFVVKGTVLFPATAALAWAVLVYLCIDFGFWNLVFGRTLGDDQL 244 Query: 253 WRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIAR 312 +RA +EI+L+++L++FL+ YL NRWH ++ + LF ++ + P + A I+R Sbjct: 245 YRAVAEISLTAALVVFLYAYLGLNRWHIHYTHLAIGLFITVISLFGLALWDPTIAAGISR 304 Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372 I + + + I+ ++G+ERA++L+P W L W WMA T L +D++QPAL Sbjct: 305 ILMGGVAIAGFGVILMLTVRGFERAIMLLPTWFLFLAWLFAAWMATTGMLQSDLVQPALA 364 Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 GGLVL V+L+GFTV+QH A S + SD ER++LA+ GSGDI+WDWD+ RD++ T+ Sbjct: 365 GGLVLFVLLLGFTVMQHAFAGSGLSHSVVSDVERRALALTGSGDIIWDWDVDRDKIHTSG 424 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 + LG+ G + GP R WL +H DRD FR LD+ + +RRGR+ FR+R D + Sbjct: 425 GLEEALGIKPGLLDGPARLWLEILHPQDRDLFRGTLDAVIDHRRGRVNQAFRLRGEDGHY 484 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 W +R RP+ S+G+++R +G DIT QK + E ++ +A DNLTG+PNR+ F+DRL Sbjct: 485 RWFKMRARPVLGSDGEVIRCVGTLLDITSQKTAEERLMHDAVHDNLTGLPNRELFMDRLV 544 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 L S + + PTV++ID+D++K++ND +G GD +L++ RR+ L+K D L+R+ Sbjct: 545 AALARSRAEGSGNPTVILIDLDRFKQVNDSIGQTAGDSMLLTAARRLSRLIKPQDSLSRI 604 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 S + F +++ISE ++ +IA FA +RKS+ P+ ++E+ +TASIG + + +++ Sbjct: 605 SADTFAVLMISEQDATRIASFADELRKSLRTPVTFGDQEVFLTASIGASIFDGGPEKATD 664 Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 ++++AE+A+ HAK GG+ +E FR S+ + + DL A+E E+ +V+ PI+RL Sbjct: 665 LMRDAEIALNHAKRLGGDRIEIFRPTLKPVASNTLALDNDLRSALEKDEIKVVFQPIVRL 724 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 D+ G EAL +W+HP G I SEF+ +AE+ +I + L ++E+ AR + W+ + Sbjct: 725 SDKTTAGFEALARWEHPSRGLIPPSEFIPVAEQSGLINELGLRVMEKGARQLAQWQREFK 784 Query: 791 M-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P+F+ +NI+S+ LL +L ++A++++T +P +KL +ES+VM NPE S +L Sbjct: 785 HALPLFVSVNISSRQLLKPDLINDVKAVLARTALTPGSLKLELTESLVMQNPEFSVQVLE 844 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKN 908 RL+ +G L+LDDFGT S LSYL FDT+K + S + + + ILR+I+ + + Sbjct: 845 RLKGLGAGLSLDDFGTGYSSLSYLQRFQFDTIKIDQSFVRPNGQSARPVILRTIVALGHD 904 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + ++A+ E D EL ++GC+Y+Q H P+ ++LKE+F + Sbjct: 905 LGMEVVAEGAETESDALELFQLGCEYVQGFHFGQPMRAAEAGRMLKEQFAQQDRS 959 >gi|39933991|ref|NP_946267.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|192289411|ref|YP_001990016.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] gi|39647838|emb|CAE26358.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Rhodopseudomonas palustris CGA009] gi|192283160|gb|ACE99540.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] Length = 959 Score = 920 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 405/961 (42%), Positives = 617/961 (64%), Gaps = 6/961 (0%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 +R A L L + L+ + A++ +++ S +DLT + + + Q+ TA Sbjct: 1 MRLIRCLALLALGVMLVAAAPQAHALDAVSVRSDAPAIDLTGVLEHLHSDNDRVQISTAP 60 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RR+EV A +W VFALAN SD QL+RLIV PHYR+VGS PDLG R Sbjct: 61 GNDGIVRRVEVRAREGGQ--NWVVFALANNSDDQLDRLIVAPHYRMVGSGLLWPDLGMSR 118 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I ++TPS G +R ++ +D+FR+T++PG+V+TF+ E+ T LPQ+YLWEP YKD VN Sbjct: 119 IATITPSTGDRPERQDSATADIFRVTLDPGSVITFVAELRTDKLPQLYLWEPEAYKDKVN 178 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 SFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI IDFGF K++++ Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGIDFGFWGKVLDMS 238 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 SG +WRA E L+++L++FLF YL+ +RWH + +IT +A + L ++ + P V Sbjct: 239 SGAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IARI+L +I I+Y G++RAVLLIP W L+ +W + MA+ + NDI Sbjct: 299 ASGIARISLVAIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVASGMAVAGTVTNDI 358 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + PAL+GGLVLIV+LIGFTV+QH + G + G+ SD ER++LA++GSGD++WDWD+ D Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFSGGGATGGVISDVERRALALIGSGDLIWDWDVSAD 418 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 +V T+P+ +LGL G++ G +WL +H D+D FR LDS + RRGRL +FR+R Sbjct: 419 KVFTSPETEALLGLKRGALEGSAASWLEVLHPLDQDRFRAALDSVLDQRRGRLTQDFRLR 478 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D F W ++ RP+ ++G++ R +G D+TE K + E +L ++ DNLTG+PNR+ Sbjct: 479 TPDGHFMWFSLKARPVVGTDGEVTRVVGTLTDVTEIKNAEERMLHDSVHDNLTGLPNRKL 538 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+DRL + + + T LRPT+MVID+D++K++ND +GIAVGD +L++L RR+ +LK Sbjct: 539 FIDRLGAVSNFAKTMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRILKPQ 598 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D LAR++G++FG+IL+SE + KI FA +RK+I PI +REI +TASIG A Sbjct: 599 DTLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQ 658 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724 S E++K+AELAMYH+K GG+ ++ ++ + DR+ ++ +L A+E E+ ++Y Sbjct: 659 TQLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERKEITILY 718 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D I G EAL +WDHPK G +S SEF+ IAEE+ +I + F+L++ A+ + Sbjct: 719 QPIVRLEDRSIAGFEALARWDHPKLGRMSPSEFISIAEEIGLIVELGTFVLDQTAKQLSI 778 Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ PIF +N++S+ LL ++L ++ + S++ + +KL +ES+VM NPE Sbjct: 779 WQRAMRAREPIFASVNVSSRQLLRHDLLHDIRTVTSRSSVARGTLKLELTESLVMENPEH 838 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902 + +L R+R++G+ L LDDFGT S LSYL PFDT+K + S + ++ IL+SI Sbjct: 839 AAQMLQRIRELGVGLALDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 I +A ++ ++A+ + D EL ++GC+Y Q P+ ++ +KLL E L Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDVDAAMKLLTEEQRLEAA 958 Query: 963 T 963 + Sbjct: 959 S 959 >gi|209886437|ref|YP_002290294.1| multi-sensor diguanylate cyclase/phophodiesterase [Oligotropha carboxidovorans OM5] gi|209874633|gb|ACI94429.1| multi-sensor diguanylate cyclase/phophodiesterase [Oligotropha carboxidovorans OM5] Length = 984 Score = 918 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 410/963 (42%), Positives = 604/963 (62%), Gaps = 10/963 (1%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 +RS A L L +L P+ A++ I++ + +DLT + + + QV TA Sbjct: 1 MRSIRCYALLALSFLILAAAQPAHAVDAISVRTDAPAIDLTGVLEFQHSDTDRIQVSTAP 60 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RRIEV A +W VFAL NT+D Q++RLIVVPHYR+V S PDLG R Sbjct: 61 GPDGIVRRIEVRAREGG--KNWLVFALTNTTDEQIDRLIVVPHYRIVASGLLWPDLGLSR 118 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I ++TPS G DR ++ +D+FRIT++PGAVVT++ E+ T +PQ+YLWEP YKD VN Sbjct: 119 IATITPSAGDRPDRQDSATADIFRITLDPGAVVTYVAELRTDAIPQLYLWEPEAYKDKVN 178 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 SFTLY GI+IG++ LLA+ LTI ++V S M A+AW VL YI IDFGF K+ ++ Sbjct: 179 SFTLYHGIVIGISGLLALVLTILFVVKGSIMFPAASALAWAVLVYIGIDFGFWGKVFDMS 238 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 +WRA E L+++ ++FLF YL+ +RWH + +IT + + L ++ + P V Sbjct: 239 VDAERVWRASGEAMLTAAFLVFLFAYLNLSRWHVRYSHITLGWLVFLGALVGLALFDPAV 298 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IARI+L I I+ +G++RAVLLIP W L IW I M +T + NDI Sbjct: 299 ASGIARISLLLIAAAGFVLIVTLSTQGFDRAVLLIPTWFLFLIWVIAAGMTVTGAVTNDI 358 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + PAL+GGLVLIV+LIGFTV+QH A G + GI SD ER++LA+ GSGD++WDWD+ D Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGATT-GIVSDVERRALALTGSGDLIWDWDVSAD 417 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 +V T+P+ +LGL G++ GP WL +H D+D FR LDS + RRGRL +FR+R Sbjct: 418 KVFTSPETEGLLGLKRGTLEGPAARWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLR 477 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D F W ++ RP+ S+G++ R +G +D+TE K + E +L ++ DNLTG+PNRQ Sbjct: 478 TPDGHFMWFALKARPVVGSDGEVARVVGTLSDVTEIKNAEERMLHDSVHDNLTGLPNRQL 537 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+DRLT + T NLRPTVMVID+D++K++ND +GIAVGD +L++L RR+ +LK Sbjct: 538 FIDRLTALAGFIKTAPNLRPTVMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 597 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D LAR+ G++FG++L SE+ +I A +RK+I PI EREI +TASIG A Sbjct: 598 DTLARIGGDQFGLLLTSEHEPARITALAETIRKTIRAPIAFNEREIFLTASIGLALSDPQ 657 Query: 667 KITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724 + E++K+AELAMYH+K G V + S ++DR+ ++ DL A+E E+ ++Y Sbjct: 658 APLTDEIIKDAELAMYHSKRLGGDRIDVYKPPMRSRKTDRLTLESDLRRAIERQEIAILY 717 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D + G EAL +WDHP+ G +S SEF+ IAEE+ +I + LF+++ A+ + + Sbjct: 718 QPIMRLEDRTVAGFEALARWDHPRLGRMSPSEFISIAEEIGLIVDLGLFVMDATAKQLST 777 Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ P+F +N++S+ LL ++L ++ ++S++ + +KL +ES+VM NPE Sbjct: 778 WQRATRTRVPLFASVNVSSRQLLRHDLIHDVRGVLSRSAVARGSLKLELTESLVMENPEH 837 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSI 902 + +L R++++G L+LDDFGT S LSYL PFDT+K + S + + R +L+SI Sbjct: 838 AAQMLQRIKELGTGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTRNGARPTLLKSI 897 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL---KERFPL 959 I MA ++ ++A+ + D EL ++GC Y Q P+ S +LL K P Sbjct: 898 IAMAHDLGMEVVAEGAETDSDAVELYQLGCQYAQGFAFGEPMDAASATRLLTGDKTEAPR 957 Query: 960 VKN 962 + Sbjct: 958 ARR 960 >gi|118590740|ref|ZP_01548141.1| hypothetical protein SIAM614_06218 [Stappia aggregata IAM 12614] gi|118436716|gb|EAV43356.1| hypothetical protein SIAM614_06218 [Stappia aggregata IAM 12614] Length = 969 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 398/960 (41%), Positives = 622/960 (64%), Gaps = 6/960 (0%) Query: 1 MLLSNSLRSHFEKAFLILVLFL-LWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGED 59 +++ + +RS F + L LF L P+ A+EPI + LD+T+ ++ G Sbjct: 3 IVIPDPIRSVFRNLVIALALFATLLGSLPARALEPIPVPIDVEALDITNSVDLHREAGTR 62 Query: 60 FQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFS 119 QV TA DGI RRIEV + +WAVFALANTSD Q++RLIV P+Y+LVGS F Sbjct: 63 LQVSTAPGADGIVRRIEVPSRE-GTNTNWAVFALANTSDEQIDRLIVAPNYKLVGSDLFW 121 Query: 120 PDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPN 179 PDLGS RI+++TPS+G + +R + ++DVF +T++PG++VTF+ E++TPNLP+I +WEP+ Sbjct: 122 PDLGSSRILAITPSQGIAPERQKSLEADVFLVTLDPGSIVTFVAEMTTPNLPEIRIWEPD 181 Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239 Y++TVN++TLYRGII+G++ LLA+FLTI ++V + M T A+AW VL Y+ IDFGF Sbjct: 182 VYEETVNAYTLYRGIILGISGLLALFLTILFVVKGTVMFPATAALAWSVLAYLCIDFGFW 241 Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299 + NL G + RAC+E+ L++SLIIFL+ YL+ NRW+ ++ + + I L + Sbjct: 242 GMVFNLEGGGSQLARACAEVMLAASLIIFLYAYLNLNRWNIHYSHLALTTLILILGLLGV 301 Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359 + + P + A IAR+ LA I + I + Y+RA+LLIP W L+ W +G M +T Sbjct: 302 AVWDPSIAAGIARLALAVIGILGFVTIAVLAFQHYDRAILLIPTWCLLMAWLVGAAMTVT 361 Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 L NDI+QPAL GGLVLIV+LIGFTV+QH A G +QG+ SD ER++LA+ G+GDI+W Sbjct: 362 GYLSNDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAIAQGLISDVERKALALTGAGDIIW 421 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 DWDI RDR+ T ++ +L L G++ GP R+WL +H DRD FR LD+ + RRG++ Sbjct: 422 DWDIDRDRIYTGNEVEDLLNLKRGTLEGPARDWLDILHPQDRDRFRATLDAVIDQRRGKV 481 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 FR+R+ D F W +R RP+ S+G+++R +G D+TE++ + E +L +A DNLT Sbjct: 482 TQTFRLRSEDGHFRWFRLRARPIIGSDGEVIRCVGTLLDVTEERTAEERLLHDAVHDNLT 541 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR+ F+DRL T + S ++ +PT++V+++D++K++ND +G++ GD +L+++ RR+ Sbjct: 542 GLPNRELFVDRLRTSVIRSRAEETTKPTLLVLNLDRFKQVNDSIGLSAGDSILLTVARRL 601 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 G L+ D L RLSG+++G++L+SE +I A ++RK++ PI +REI +T S+G Sbjct: 602 GRLIGQQDTLGRLSGDQYGLVLLSEQEPDRIVALADSLRKAVRAPITFGDREIFLTCSVG 661 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVEN 717 A + K +M+ NAE+A+ HAK GG+ E FR + V ++ DL A++ Sbjct: 662 IAFFEGGKQAVEDMVTNAEIALNHAKRLGGDRQEVFRPILRPLDKNIVDLEADLREAIKK 721 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 L + + PIIRL D+ + G E L +W+H K G IS SEF+ +AE+ +I + ++ML++ Sbjct: 722 ETLGVYFQPIIRLEDQSVAGFEVLARWNHAKRGKISPSEFIPVAEQSGLINELGIYMLDK 781 Query: 778 IARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 A+ + W+ + +P P+F +N++S+ LL +L ++A++S+T +P +KL +ES+ Sbjct: 782 GAQQLAFWQREFPLPQPLFASVNLSSRQLLKQDLINDVKAVLSRTSLTPGTLKLELTESL 841 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKR 895 VM NPE S +L RLR +G L+LDDFGT S LSYL PFDT+K + S + + R Sbjct: 842 VMSNPEYSAKVLERLRGLGAGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVKPNGSSAR 901 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +LR+I+ M ++ +++A+ E D EL ++GC++ Q + + K+L++ Sbjct: 902 PVLLRTIVAMGHDLGMSVVAEGAESENDALELYQLGCEFAQGFYFGEAVTAAEATKILRK 961 >gi|316932456|ref|YP_004107438.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315600170|gb|ADU42705.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Rhodopseudomonas palustris DX-1] Length = 959 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 404/961 (42%), Positives = 615/961 (63%), Gaps = 6/961 (0%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 +R A L L + ++ + A++ +++ S +DLT + + + Q+ TA Sbjct: 1 MRLIRCLALLALGVMMIAAAPQAHALDAVSVRSDAPAIDLTGVLEHLHSDNDRIQISTAP 60 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RR+EV A +W VFALAN +D QL+RLIV PHYR+VGS PDLG R Sbjct: 61 GNDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRMVGSGLLWPDLGMSR 118 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I ++TPS G +R + +D FRIT++PG+V+TF+ E+ T LPQ+YLWEP YKD VN Sbjct: 119 IATITPSTGDRSERQESPTADTFRITLDPGSVITFVAELRTDKLPQLYLWEPEAYKDKVN 178 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 SFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI IDFGF K++++ Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGIDFGFWGKVLDMS 238 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 SG +WRA E L+++L++FLF YL+ +RWH + +IT +A + L ++ + P V Sbjct: 239 SGAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IARI+L I I+Y G++RAVLLIP W L+ +W + MA+ + NDI Sbjct: 299 ASGIARISLVLIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVASGMAVAGAVTNDI 358 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + PAL+GGLVLIV+LIGFTV+QH + G + G+ SD ER++LA++GSGD++WDWD+ D Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFSGGGATGGVISDVERRALALIGSGDLIWDWDVSAD 418 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 +V T+P+ +LGL G++ G +WL +H D+D FR LDS + RRGRL +FR+R Sbjct: 419 KVFTSPETEALLGLKRGALEGSAASWLEVLHPLDQDRFRAALDSVLDQRRGRLTQDFRLR 478 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D F W ++ RP+ ++G++ R +G D+T+ K + E +L ++ DNLTG+PNR+ Sbjct: 479 TPDGHFMWFSLKARPVVGTDGEVTRVVGTLTDVTDIKNAEERMLHDSVHDNLTGLPNRKL 538 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+DRL + + + T LRPT+MVID+D++K++ND +GIAVGD +L++L RR+ +LK Sbjct: 539 FIDRLGAVANFAKTMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRILKPQ 598 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D LAR++G++FG+IL+SE + KI FA +RK+I PI +REI +TASIG A Sbjct: 599 DTLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQ 658 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724 S E++K+AELAMYH+K GG+ ++ ++ + DR+ ++ +L A+E E+ ++Y Sbjct: 659 TQLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERKEITILY 718 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D I G EAL +WDHPK G +S SEF+ IAEE+ +I + F+L++ A+ + Sbjct: 719 QPIVRLEDRSIAGFEALARWDHPKLGRMSPSEFISIAEEIGLIVELGTFVLDQTAKQLSI 778 Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ PIF +N++S+ LL ++L ++ + S++ + +KL +ES+VM NPE Sbjct: 779 WQRAMRAREPIFASVNVSSRQLLRHDLLHDIRTVTSRSSVARGTLKLELTESLVMENPEH 838 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902 + +L R+R++GI L+LDDFGT S LSYL PFDT+K + S + ++ IL+SI Sbjct: 839 AAQMLQRIRELGIGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 I +A ++ ++A+ + D EL ++GC+Y Q P+ ++ +KLL E L Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDVDAAMKLLTEEQRLEAA 958 Query: 963 T 963 + Sbjct: 959 S 959 >gi|90422309|ref|YP_530679.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gi|90104323|gb|ABD86360.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisB18] Length = 958 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 408/954 (42%), Positives = 619/954 (64%), Gaps = 6/954 (0%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 +R A L ++ SP+ A++ +++ +DLT++ ++G+ QV TA Sbjct: 1 MRLIRCLALAALGFMMIAAGSPANALDAVSVRGDAPAIDLTAVLDHQRSEGDRIQVSTAP 60 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RRIEV A +W VFALAN +D QL+RLIV PHYR+V S F PDLG R Sbjct: 61 GTDGIVRRIEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRIVSSGLFWPDLGLSR 118 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I +VTPS G +R + +DVFR+T++PGAV+TF+ E+ T LPQ+YLWEP YKD VN Sbjct: 119 IATVTPSTGDRPERQDSPTADVFRVTLDPGAVITFVAELRTDKLPQLYLWEPEAYKDKVN 178 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 SFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI +DFGF K++++ Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMS 238 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 SG +WRA E L+++L++FLF YL+ +RWH + +IT +A + L ++ + P V Sbjct: 239 SGAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IAR++L I I+Y G++RAVLLIP W L+ +W I MA+ + NDI Sbjct: 299 ASGIARMSLVLIAFAGFALILYLSTHGFDRAVLLIPTWFLLVVWVIAAGMAVAGSVTNDI 358 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + PAL+GGLVLIV+LIGFTV+QH A G G+ SD ER++LA+ GSGD++WDWD+ D Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGSAPTGVVSDIERRALALTGSGDLIWDWDVSAD 418 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 +V T+P+ T+LGL G++ G WL +H D+D FR LDS + RRGRL +FR+R Sbjct: 419 KVFTSPETETLLGLKRGTLEGSAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLTQDFRLR 478 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D +F W ++ RP+ S+G++ R +G D+TE K + E +L ++ DNLTG+PNR+ Sbjct: 479 TPDGRFMWFALKARPVVGSDGEVSRVVGTLTDVTEIKNAEERMLHDSVHDNLTGLPNRKL 538 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+DRL + + + NLRPT+MVID+D++K++ND +GIAVGD +L++L RR+ +LK Sbjct: 539 FIDRLNAVANFAKAMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 598 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D LARL+G++FG+IL+SE + KI FA +RK+I PI +REI +TASIG A Sbjct: 599 DTLARLAGDQFGLILMSEQDPAKITAFAETIRKTIRAPIAFNDREIFLTASIGLALSDPQ 658 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724 + E++K+AELAMYH+K GG+ ++ ++ + + ++DR+ ++ +L A+E E+ ++Y Sbjct: 659 TQLTDEIIKDAELAMYHSKRIGGDRIDVYKPVMRARKTDRLTLESELRRAIERQEITILY 718 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D I G EAL +WDHPK G +S SEF+ IAEE+ +I + +F++++ A+ + Sbjct: 719 QPIVRLEDRSIAGFEALARWDHPKLGRMSPSEFISIAEEIGLIVDLGMFVMDQTAKQLAI 778 Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ PIF +N++S+ LL ++L ++ ++S++ + +KL +ES+VM NPE Sbjct: 779 WQRAMRSREPIFASVNVSSRQLLRHDLLHDIRTVLSRSTVARGTLKLELTESLVMENPEH 838 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902 + +L R+R++G L+LDDFGT S L+YL PFDT+K + S + ++ IL+SI Sbjct: 839 AAQMLHRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +A ++ ++A+ + D EL ++GC+Y Q P+ ++ +KLL E Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAAMKLLTEE 952 >gi|92119009|ref|YP_578738.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis X14] gi|91801903|gb|ABE64278.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Nitrobacter hamburgensis X14] Length = 960 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 407/956 (42%), Positives = 620/956 (64%), Gaps = 6/956 (0%) Query: 5 NSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFT 64 +LR A L L + SP+ AI+ +++ S +DLT+I + + QV T Sbjct: 1 MTLRPVRWLACLALAFMIFVAASPARAIDAVSVRSDAPAIDLTAILDHQHSDSDRIQVST 60 Query: 65 AADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGS 124 A DGI RR+EV A +W VFALAN +D QL+RLIV PHYRLV S PDLG Sbjct: 61 APGTDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRLVSSGLLWPDLGQ 118 Query: 125 RRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDT 184 RI ++TPS G +R ++ +DVFRIT++PGAV+TF+ME+ T LPQ+YLWEP+ YKD Sbjct: 119 SRIATITPSTGDRPERQESATADVFRITLDPGAVITFVMELRTDKLPQLYLWEPDAYKDK 178 Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244 +NSFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI +DFGF K+++ Sbjct: 179 INSFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLD 238 Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304 + +G +WRA E L+++L++FLF YL+ +RWH + +IT +A + L ++ + P Sbjct: 239 MSAGAERVWRASGEAMLAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDP 298 Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364 V + IAR++LA I ++ I+Y + G++RAVLLIP W L+ +W M + + N Sbjct: 299 AVASGIARMSLALIAVFGFGLIVYLAIHGFDRAVLLIPTWFLLVVWVGAAGMTVEGNVTN 358 Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 DI+ PAL+GGLVLIV+LIGFTV+QH A G + G+ SD ER++LA+ GSGD+VWDWD+ Sbjct: 359 DIVGPALLGGLVLIVMLIGFTVMQHAFAGGGATAGVVSDVERRALALTGSGDLVWDWDVS 418 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 D+V T+P+ ++LGL G++ GP +WL +H D+D FR LDS + RRGRL +FR Sbjct: 419 ADKVFTSPETESLLGLKRGTLEGPAASWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFR 478 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 +R D F W ++ RP+ S+G++ R +G D+TE +K+ E +L ++ DNLTG+PNR Sbjct: 479 LRTPDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEARKAEERMLHDSVHDNLTGLPNR 538 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + F+DRL + + T NLRPT+MVID+D++K++ND +G+A GD +L++L RR+ +LK Sbjct: 539 KLFIDRLNAVATFAKTMPNLRPTLMVIDLDRFKQVNDSVGVAEGDSILLTLARRLTRILK 598 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D LARL+G++FG+IL+SE + +I FA +RK+I PI +REI +TASIG A Sbjct: 599 AQDTLARLAGDQFGLILMSEQDPARITAFAETIRKTIRAPIAFNDREIFLTASIGLALSD 658 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722 + E++K+AELAMYH+K GG+ ++ ++ + DRV ++ +L A+E E+ + Sbjct: 659 PQTQLTEEIVKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRVTLEAELRRAIERREIAI 718 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 +Y PI+RL D + G EAL +WDHPK G ++ EF+ IAEE +I I F++++ AR + Sbjct: 719 LYQPIVRLEDRAVAGFEALARWDHPKLGRMAPDEFITIAEEAGLIVDIGTFVMDQTARQL 778 Query: 783 ISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W+ PIF +N++S+ LL ++L ++A++S++ + +KL +ES+VM NP Sbjct: 779 AVWQRAMRSQTPIFASVNVSSRQLLRHDLINDIRAVLSRSSIARGTLKLELTESLVMENP 838 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILR 900 E + +L R+R++G+ L+LDDFGT S LSYL PFDT+K + S + ++ IL+ Sbjct: 839 EHAAQMLQRIRELGVGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILK 898 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 SII +A ++ ++A+ + D EL ++GC+ Q P+ ++ ++LL + Sbjct: 899 SIIALAHDLGMDVVAEGAETDSDAVELYQLGCECAQGFAFGEPMDADATMRLLAQE 954 >gi|254504341|ref|ZP_05116492.1| hypothetical protein SADFL11_4380 [Labrenzia alexandrii DFL-11] gi|222440412|gb|EEE47091.1| hypothetical protein SADFL11_4380 [Labrenzia alexandrii DFL-11] Length = 970 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 396/968 (40%), Positives = 617/968 (63%), Gaps = 7/968 (0%) Query: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPS-FAIEPINISSSDRVLDLTSITRIYVNQGED 59 + + + + A L+ +L + + A+EPI++ LD+T+ ++ + G Sbjct: 3 ISVPVHIFNLIRSAILVAAAMMLIVAPQAARALEPISVPLDIEALDITNAIDMHRDAGTR 62 Query: 60 FQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFS 119 QV TA DGI RRIEV + S +WAVFALANTSD Q++RLIV P+Y+ VGS F Sbjct: 63 LQVSTAPGADGIVRRIEVPSRS-GENTNWAVFALANTSDEQVDRLIVAPNYKFVGSDLFW 121 Query: 120 PDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPN 179 PDLGS RI S+TPS+G + R + ++DVF +T++PG+VVTF+ E++TPNLP+I +WEP+ Sbjct: 122 PDLGSSRIASITPSQGIAPSRQKSLEADVFLVTLDPGSVVTFVAELTTPNLPEIRVWEPD 181 Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239 YK+TVN+++LYRGII+G++ LLA+FLTI ++V + M T A+AW VL Y+ IDFGF Sbjct: 182 VYKETVNAYSLYRGIILGISGLLALFLTILFVVKGTVMFPATAALAWSVLAYLCIDFGFW 241 Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299 + L G + RA +E+ L++SLIIFL+ YL+ NRW+ ++ + + + L + Sbjct: 242 GMVFKLEGGSSQLARASAEVMLAASLIIFLYAYLNLNRWNIHYSHLALTTLILLLGLLGV 301 Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359 + + P + A IAR++L I L I + Y+RA+LLIP W L+ W IG M +T Sbjct: 302 AVWDPSIAAGIARLSLGIIGLLGFVTIAVLAYQHYDRAILLIPTWCLLIAWLIGAAMTVT 361 Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 RL NDI+QPAL GGLVLIV+LIGFTV+QH A G +QG+ SD ER++LA+ G+GDI+W Sbjct: 362 GRLSNDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAIAQGLISDVERKALALTGAGDIIW 421 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 DWDI RD++ T ++ +L L G++ GP R+WL +H DRD FR LD+ + RRG++ Sbjct: 422 DWDIDRDKIYTGNEVEDLLNLKHGTLEGPARDWLEILHPQDRDRFRATLDAVIDQRRGKI 481 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 Q FR+R+ D F W +R RP+ ++G+++R +G D+TE++ + E +L +A DNLT Sbjct: 482 QQTFRLRSEDGHFRWFRLRARPIVGADGEVIRCVGTMLDVTEERTAEERLLHDAVHDNLT 541 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR+ F+DRL T + + ++ +PTV+VI++D++K++ND +G++ GD +L+++ RR+ Sbjct: 542 GLPNRELFVDRLQTSVVRAQAEETTKPTVLVINLDRFKQVNDSIGLSAGDSILLTVARRL 601 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 G L+ D L RLS +++G++L+SEN +I A A+RK++ PI +REI +T S+G Sbjct: 602 GRLIGQQDTLGRLSSDQYGLVLLSENEPDRIVALADALRKAVRAPITFSDREIFLTCSVG 661 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVEN 717 + + K +ML NAE+A+ HAK GG+ E +R + V ++ DL A++ Sbjct: 662 ISFFEGGKQAVEDMLTNAEIALNHAKRLGGDRQEVYRPILRPLGKNIVDLEADLREAIKK 721 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 L + + PIIRL D+ I G E L +W+HPK G IS +EF+ IAE+ +I + ++ML++ Sbjct: 722 ETLGVFFQPIIRLEDQAIAGFEVLARWNHPKRGKISPAEFIPIAEQSGLINDLGMYMLDK 781 Query: 778 IARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 A + W+ + MP P+F +N++S+ LL +L ++A++S+ +KL +ES+ Sbjct: 782 GASQLAFWQREFPMPRPLFTSVNLSSRQLLKQDLINDVKAILSRNSLEVGTLKLELTESL 841 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKR 895 VM NPE S +L RLR +G L+LDDFGT S LSYL PFDT+K + + + + R Sbjct: 842 VMSNPEYSAKVLERLRSLGAGLSLDDFGTGHSSLSYLQRFPFDTIKIDQAFVKPDGSAAR 901 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +LR+I+ M ++ +++A+ E D EL ++GC Y Q + + K+L+ Sbjct: 902 PVLLRTIVAMGHDLGMSVVAEGAESENDALELFQLGCQYAQGFYFGEAVSAAEATKMLR- 960 Query: 956 RFPLVKNT 963 + P+ + Sbjct: 961 KMPVAEAA 968 >gi|299134147|ref|ZP_07027340.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Afipia sp. 1NLS2] gi|298590894|gb|EFI51096.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Afipia sp. 1NLS2] Length = 995 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 411/952 (43%), Positives = 606/952 (63%), Gaps = 7/952 (0%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 +RS A L L +L + P+ A++ I++ + +DLT + + + QV TA Sbjct: 1 MRSIRCYALLALSFLMLAALQPAHAVDAISVRTDAPAIDLTGVLEFQHSDTDRIQVSTAP 60 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RRIEV A +W VFAL NT+D Q++RLIVVPHYR+V S PDLG R Sbjct: 61 GPDGIVRRIEVRAREGG--KNWVVFALTNTTDEQIDRLIVVPHYRIVSSGLLWPDLGLSR 118 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I ++TPS G DR +S +D+FRIT++PGAVVT++ E+ T +PQ+YLWEP YKD VN Sbjct: 119 IATITPSAGDRPDRQDSSTADIFRITLDPGAVVTYVAELRTDAIPQLYLWEPEAYKDKVN 178 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 SFTLY+GI+IG+A LLA+ LTI ++V S M A+AW VL YI +DFGF K+ ++ Sbjct: 179 SFTLYQGIVIGIAGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVFDMS 238 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 +WRA E L+++L++FLF YL+ +RWH + +IT +A + L ++ + P V Sbjct: 239 IDAERVWRASGEAMLAATLLVFLFAYLNLSRWHVRYSHITIGWLAFLGALVALALFDPAV 298 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IARI+L I I+Y +G++RAVLLIP W L +W I M +T + NDI Sbjct: 299 ASGIARISLFLIAGAGFALIVYLATQGFDRAVLLIPTWFLFLVWVIAAGMTVTGAVTNDI 358 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + PAL+GGLVLIV+LIGFTV+QH A G S G+ SD ER++LA+ GSGD++WDWD+ D Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGTTS-GVVSDVERRALALTGSGDLIWDWDVSAD 417 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 +V T+P+ +LGL G++ GP WL +H D+D FR LDS + RRGRL +FR+R Sbjct: 418 KVFTSPETEGLLGLKRGTLEGPAARWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLR 477 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D F W ++ RP+ S+G++ R +G +D+TE K + E +L ++ DNLTG+PNRQ Sbjct: 478 TPDGHFMWFALKARPVVGSDGEVARVVGTLSDVTEIKNAEERMLHDSVHDNLTGLPNRQL 537 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+DRL + T NLRPTVMVID+D++K++ND +GIAVGD +L++L RR+ +LK Sbjct: 538 FMDRLNAMASFIKTAPNLRPTVMVIDLDRFKQVNDSVGIAVGDSILLTLARRLARILKPQ 597 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D LARL+G++FG++L SE+ KI A +RK+I PI EREI +TASIG A Sbjct: 598 DTLARLAGDQFGLLLTSEHEPAKITALAETIRKTIRAPIAFNEREIFLTASIGLALSDPQ 657 Query: 667 KITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724 + E++K+AELAMYH+K G V + + ++DR+ ++ +L A+E E+ ++Y Sbjct: 658 APLTDEIVKDAELAMYHSKRIGGDRIDVYKPPMRARKTDRLTLESELRRAIERQEITILY 717 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D + G EAL +WDHPK G +S SEF+ IAEE+ +I + F+++ AR + + Sbjct: 718 QPIMRLEDRAVAGFEALARWDHPKLGRMSPSEFITIAEEIGLIVDLGQFVMDTTARQLSA 777 Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ P+F +N++S+ LL ++L ++ ++S++ + +KL +ES+VM NPE Sbjct: 778 WQRATRTRVPLFASVNVSSRQLLRHDLIHDVRGVLSRSAVARGSLKLELTESLVMENPEH 837 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSI 902 + +L R++++G L+LDDFGT S LSYL PFDT+K + S + + R +L+SI Sbjct: 838 AAQMLHRIKELGTGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTRNGVRPTLLKSI 897 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 I MA ++ ++A+ + D EL ++GC+Y Q P+ S +LL Sbjct: 898 IAMAHDLGMEVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDAASATRLLT 949 >gi|90420104|ref|ZP_01228012.1| putative signaling protein, EAL, GGDEF, and 7TM-DISM domains [Aurantimonas manganoxydans SI85-9A1] gi|90335438|gb|EAS49188.1| putative signaling protein, EAL, GGDEF, and 7TM-DISM domains [Aurantimonas manganoxydans SI85-9A1] Length = 977 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 425/963 (44%), Positives = 635/963 (65%), Gaps = 4/963 (0%) Query: 4 SNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVF 63 L + + + +++ L+ PS A+E ++IS D +D+ +Y +G FQV Sbjct: 15 PIGLAARWFLSLAFVLVALIVSAPPSLALEAVSISRGDTAIDMLPAVDVYRGKGRAFQVA 74 Query: 64 TAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLG 123 T DGI RRIE+ A S + GDWAVFALAN +D Q++RL+V PH+RLVGS PDLG Sbjct: 75 TVPGADGIVRRIEIEAQSAQASGDWAVFALANNTDKQIDRLVVAPHFRLVGSGVVWPDLG 134 Query: 124 SRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKD 183 S+RI S+TPS+GF+L+R P++D+DVF +T++PGA+VTF+ E+++PNLP + LWEPN YKD Sbjct: 135 SQRIASITPSQGFALERQPSTDADVFLVTLDPGAIVTFVAELASPNLPDLRLWEPNAYKD 194 Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243 TVN+FTLYRGI++G+A LLA+FLTI ++V S+M T ++AW VL YI IDF F KLV Sbjct: 195 TVNAFTLYRGIVLGIAGLLAVFLTILFVVKGSAMFPATASLAWAVLAYICIDFDFWQKLV 254 Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + G+ +WRA +E++L+ +L++FLF YL+ NRWH + T +A + + ++ + Sbjct: 255 PILPGQERVWRAGTEVSLAFTLVLFLFAYLNLNRWHGVLSIFTIMWLAALGTVGVVAAFD 314 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363 P+V + IARI+LA+ + I ++ +RA++LIP W L+ +W W +T R+D Sbjct: 315 PVVASGIARISLAATAVLGLGIIGTLAVQRSDRAIMLIPTWCLVILWVFAGWSTVTGRID 374 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 NDIIQPAL GGLVLIV+LIGFTV+QH A G F+QG+ SD ER+SLA+ G+GD ++DWD+ Sbjct: 375 NDIIQPALGGGLVLIVLLIGFTVMQHAFAGGGFAQGLLSDLERRSLALAGTGDAIFDWDV 434 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 RDR+ D T+ G+ G+M+GP R+WLP +H +DRD F+ LD+ + +RRGR+ +F Sbjct: 435 SRDRIFAGADGDTLAGMPVGTMNGPARDWLPVLHPDDRDRFKVTLDTILEHRRGRIIQDF 494 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R+R D +HW+ +R RP+ S+G+++R +G D+T+ KK+ E +L +A D LTG+PN Sbjct: 495 RLRDEDGHYHWVSLRARPVLGSDGEVVRCVGTLKDVTDAKKAEERLLHDALHDQLTGLPN 554 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R+ F DRL I L+ T +++PT++VID+D++K++ND GIA GD +L+++ RR+ LL Sbjct: 555 RELFRDRLEAIGVLAMTRADVQPTIIVIDLDRFKQVNDDFGIATGDTILLTIGRRLKRLL 614 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 K D LARL ++FG+IL+SE +ADFA +R +I PI REI +T SIG W Sbjct: 615 KPQDSLARLGSDQFGLILLSETEVTAVADFAEGLRNAIKAPIAFANREIVLTGSIGLTGW 674 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELY 721 T TS E LK AELAMY AK GG+ +E FR + R+ ++ DL A E +EL Sbjct: 675 TE-ASTSDEALKEAELAMYQAKRNGGDSIEPFRPAYRSVGYGRLELESDLRRAFERNELS 733 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L + PI+ L E+I G EAL++W+HP+ G IS +EF+ IAE +I + F LE R Sbjct: 734 LAFQPIVTLESEDIAGFEALLRWEHPRRGAISPAEFVPIAESTGLIVQLGQFALEEACRR 793 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 + W+ +F+ +NI+S+ L+ +L ++ ++ + SP+ +KL +ES+VM NP Sbjct: 794 LGDWQRMTGDENLFVSVNISSRQLIRQDLIGDVKTVLERYRISPNSLKLELTESLVMDNP 853 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILR 900 ERS LL RL+ +G+ L+LDDFGT S L+YL PFDT+K + S + ++ +R IL Sbjct: 854 ERSAQLLTRLKALGVGLSLDDFGTGYSSLAYLMGFPFDTLKIDQSFLKNNSQPQRPIILH 913 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 SI+ MA ++ ++A+ I + D+ +L ++GC+Y Q + PLG + + K+L +R + Sbjct: 914 SIVTMAHDLGLKVVAEGIESDADVMQLRQLGCEYAQSFKFSPPLGSDQVRKILDDRAVGL 973 Query: 961 KNT 963 K Sbjct: 974 KRA 976 >gi|146338203|ref|YP_001203251.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. ORS278] gi|146191009|emb|CAL75014.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Bradyrhizobium sp. ORS278] Length = 968 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 404/957 (42%), Positives = 618/957 (64%), Gaps = 7/957 (0%) Query: 5 NSLRSHFEKA-FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVF 63 +LR A + L L + V+P+ A++ +++ S +DLT I ++ + QV Sbjct: 8 LTLRLVRCLASLVALGLVMCGAVAPAQAVDAVSVRSDAPAIDLTGILDHQRSENDRIQVS 67 Query: 64 TAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLG 123 TA DGI RRIEV A +W VFALAN +D QL+RLIV PHYR+VGS PDLG Sbjct: 68 TAPGTDGIVRRIEVRAREGGQ--NWIVFALANNTDDQLDRLIVAPHYRVVGSGVLWPDLG 125 Query: 124 SRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKD 183 RI ++TPS G +R + +DVFR+T++PG+VVTF+ E+ T LPQ+YLWEP YKD Sbjct: 126 LSRIATITPSIGDLPERQESPTADVFRVTLDPGSVVTFVAELRTDKLPQLYLWEPEAYKD 185 Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243 VNSFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI +DFGF K++ Sbjct: 186 KVNSFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVL 245 Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 ++ + +WRA E L+++L++FLF YL+ +RWH + +IT + + L ++ + Sbjct: 246 DMSNNAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLFFLGSLVAVALFD 305 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363 P V + IARI+L I + I+Y G++RAVLLIP W L+ +W M + ++ Sbjct: 306 PAVASGIARISLLLIAVVGFALIVYLSSHGFDRAVLLIPTWFLLTVWVGAASMTVAGQVT 365 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 NDI+ PAL+GGLVLIV+LIGFTV+QH A G + GI SD ER++LA+ GSGD++WDWD+ Sbjct: 366 NDIVGPALLGGLVLIVMLIGFTVMQHAFAGGGATTGIVSDVERRALALAGSGDLIWDWDV 425 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 D+V T+P+ ++LGL G++ GP WL +H D+D FR LDS + RRGRL +F Sbjct: 426 SADKVFTSPETESLLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDF 485 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R+R D F W ++ RP+ S+G++ R +G D+TE K + E +L ++ DNLTG+PN Sbjct: 486 RLRTPDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNAEERLLHDSVHDNLTGLPN 545 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R+ F+DRL + + + T LRPT+MVID+D++K++ND +GIAVGD +L++L RR+ +L Sbjct: 546 RKLFIDRLAAVANFAKTMPALRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRIL 605 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 K D LARL+G++FG+IL+SE + +I FA +RK+I PI EREI +TASIG A Sbjct: 606 KPHDTLARLAGDQFGLILLSEQDPARITAFAETIRKTIRAPIAFNEREIFLTASIGLALS 665 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELY 721 S +++K+AELAMYH+K GG+ ++ ++ + +DR+ ++ +L ++E E+ Sbjct: 666 DPQTQLSEDIIKDAELAMYHSKRIGGDRIDVYKPAMRARKNDRLTLESELRRSIERQEIT 725 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 ++Y PI+RL D I G EAL +WDHPK G +S SEF+ IAEE+ +I + F+L++ AR Sbjct: 726 ILYQPIVRLEDRSIAGFEALARWDHPKLGRMSPSEFITIAEEIGLIVDLGTFVLDQTARQ 785 Query: 782 IISWRDQ-ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + W+ PIF +N++S+ LL ++L ++++++++ + +K+ +ES+VM N Sbjct: 786 LSVWQRATRLREPIFASVNVSSRQLLRHDLIHDIRSVLARSSVARGSLKIELTESLVMEN 845 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AIL 899 PE + +L R+R++G+ L++DDFGT S L+YL PFDT+K + S + + IL Sbjct: 846 PEHAAQMLARIRELGVGLSIDDFGTGHSSLAYLQRFPFDTLKIDQSFVRTTARGTRPVIL 905 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +SII +A ++ ++A+ + D EL ++GC+Y Q P+ ++ ++LL E Sbjct: 906 KSIIALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGYAFGEPMDADAAMRLLTEE 962 >gi|298293032|ref|YP_003694971.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Starkeya novella DSM 506] gi|296929543|gb|ADH90352.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Starkeya novella DSM 506] Length = 1084 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 391/937 (41%), Positives = 583/937 (62%), Gaps = 8/937 (0%) Query: 26 VSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHR 85 + A+E + I V+DL ++ + QV T DGI RRIEV + + Sbjct: 41 APKAMALEAVAIRLEALVVDLAPAVERRTSETDRIQVSTVPGADGIVRRIEVRSVAPGPN 100 Query: 86 GD-WAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNS 144 G WA+FALAN +D Q++RLIV PHYR+VGS F PDLG+RRI++VT S+GF +R Sbjct: 101 GSKWAIFALANNTDEQVDRLIVAPHYRMVGSGVFWPDLGNRRILNVTASQGFRPERQNAP 160 Query: 145 DSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAI 204 D+DVF IT++PG VT + E+ LPQ+YLWEP YKD VNSFTLY GI+IG+A LLA+ Sbjct: 161 DADVFLITLDPGTTVTLVAELGDGGLPQLYLWEPEAYKDKVNSFTLYNGIVIGIAGLLAL 220 Query: 205 FLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSS 264 FLTI ++V S+M A+AW VLGYI +DFGF SK+ + WRA E L+++ Sbjct: 221 FLTILFVVKGSAMFPAAAALAWAVLGYIGLDFGFWSKVFGISPLAQQFWRAAGEAILAAT 280 Query: 265 LIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324 L++FLF YL+ NRWH + ++T + +A + ++ P A IAR +L + L Sbjct: 281 LVVFLFAYLNLNRWHVRYAHVTAGWLVFLAAIVGLALLDPSAAAGIARPSLLVVSLMGFG 340 Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384 +++ + Y+RAVL+IP L+ +W I MA++ R+ ND++ PAL+GGLVLIV+LIGF Sbjct: 341 VVMWLALHRYDRAVLIIPTLFLLVVWVITAGMAVSGRIGNDLVAPALLGGLVLIVMLIGF 400 Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 TV+QH A G + ER++LAV GSGDIVWDWD+ DR+ +P+ +LGL G+ Sbjct: 401 TVMQHAFAGIGSVAGSAQELERRALAVAGSGDIVWDWDVDTDRIHVSPEAEHMLGLKQGT 460 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + WL IH DRD FR LD + RRGR+ +FR+RA D + W +R RP+ Sbjct: 461 LETEAAGWLDIIHPGDRDRFRATLDGLLDQRRGRIDQDFRLRAHDGHYLWFNLRARPVVG 520 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 ++G+++R IG +D+T+ + + E +L +A DNLTG+PNR+ FLDRL+ LS TD+ + Sbjct: 521 TDGEVVRCIGTLSDVTDSRTAEERMLHDAVHDNLTGLPNRELFLDRLSAANGLSRTDEQI 580 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 RPTVM+ID+D++K++N LG+ GD +L+++ RR+ L K D LARL + F +IL+SE Sbjct: 581 RPTVMLIDLDRFKQVNASLGMPAGDSILLTVARRLMRLAKQQDTLARLGSDHFALILLSE 640 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + +I FA +R+++ PI +REI +TASIG K +EMLK+AELAMY A Sbjct: 641 RDPERITAFADTLRRTLRAPITFGDREIFITASIGLLLADGQKRAPTEMLKDAELAMYFA 700 Query: 685 KHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K GG+ +E FR S DR+ ++ DL A+E +E+ +VY P++ L + G EA++ Sbjct: 701 KRVGGDRIEVFRPSMRTHKLDRLTMEADLRQALERNEISVVYQPVVDLSTRAVAGFEAMV 760 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP G + +F+ +AE+ +I + LF+L+ AR + W+ PIF+ +NI+S Sbjct: 761 RWQHPSLGTLGPDDFLGLAEDTGLIVDLGLFVLDTAARQLGVWQRSLRGEPIFVCVNISS 820 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + +L ++L + ++A++++ + +P +KL +ES+ M NPE + +L R+R++G LTLDD Sbjct: 821 RHMLRHDLLQDLKAVLARNVVAPGTLKLELAESLAMENPEYASQILLRMRELGAGLTLDD 880 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT-----GSTEKRIAILRSIIPMAKNIETTIIAKD 917 FGT S L+YL PFD++K + + M G+ +R ILR+II MA ++ I+A+ Sbjct: 881 FGTGYSSLAYLQRFPFDSIKVDRTFMKALGRSGNKAQRPIILRTIINMAHDLGMDIVAEG 940 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 I E L ++GC Y Q P+ K L+ Sbjct: 941 IETEQVAAALAKLGCRYGQGRLYGEPMTAEDARKRLQ 977 >gi|91978806|ref|YP_571465.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91685262|gb|ABE41564.1| GGDEF domain [Rhodopseudomonas palustris BisB5] Length = 958 Score = 908 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 405/954 (42%), Positives = 613/954 (64%), Gaps = 6/954 (0%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 +R A L L L L+ + + A++ +++ S +DLT + + + QV TA Sbjct: 1 MRLIRCLALLALGLMLIAVAPQAHALDAVSVRSDAPAIDLTGVLEHQRSDTDRIQVSTAP 60 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RRIEV A W VFALAN +D QL+RLIVVPHYR+V S F PDLG R Sbjct: 61 GNDGIVRRIEVRAREGGQ--HWVVFALANNTDDQLDRLIVVPHYRMVASGLFWPDLGLSR 118 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I ++TPS G +R ++ +D+FR+T++PG+V+TF+ E+ T LPQ+YLWEP YKD VN Sbjct: 119 IATITPSTGDRPERQDSTTADIFRVTLDPGSVITFVAELRTDKLPQLYLWEPEAYKDKVN 178 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 SFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI IDFGF SK+ ++ Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGIDFGFWSKVFDMS 238 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 +G IWRA E L+++L++FLF YL+ +RWH + +IT +A + L ++ + P V Sbjct: 239 AGAERIWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IAR++L I I+Y G++RAVLLIP W L+ IW I M + + NDI Sbjct: 299 ASGIARMSLVLIAFAGFTLIVYLSTHGFDRAVLLIPTWFLLVIWVIASGMTVAGSVTNDI 358 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + PAL+GGLVLIV+LIGFTV+QH A + G+ SD ER++LA++GSGD++WDWD+ D Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGSGATGGVVSDVERRALALIGSGDLIWDWDVSAD 418 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 +V T+P+ +LGL G++ G WL +H D+D FR LDS + RRGRL FR+R Sbjct: 419 KVFTSPETEALLGLKRGALEGSAATWLEVLHPLDQDRFRAALDSVLDQRRGRLTQHFRLR 478 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D F W ++ RP+ ++G++ R +G D+TE K + E +L +A DNLTG+PNR+ Sbjct: 479 TPDGHFMWFALKARPVVGADGEVTRVVGTLTDVTEAKNAEERMLHDAVHDNLTGLPNRKL 538 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+DRL + + + T NLRPT+MVID+D++K++ND +GIAVGD +L++L RR+ +LK Sbjct: 539 FMDRLGAVANFAKTMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 598 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D LAR++G++FG+IL+SE + KI FA +RK+I PI +REI +TASIG A Sbjct: 599 DTLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQ 658 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724 S E++K+AELAMYH+K GG+ ++ ++ + DR+ ++ +L A+E E+ ++Y Sbjct: 659 TQLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERQEITILY 718 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D + G EAL +WDHPK G ++ EF+ IAEE+ +I + +F++++ A+ + Sbjct: 719 QPIVRLEDRSVAGFEALARWDHPKLGRMAPGEFISIAEEIGLIVELGMFVMDQTAKQLAI 778 Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ PIF +NI+S+ LL ++L ++ ++S++ + +KL +ES+VM NPE Sbjct: 779 WQRAMRSREPIFASVNISSRQLLRHDLIHDVRTVLSRSSIARGTLKLELTESLVMENPEH 838 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902 + +L R+R++G L+LDDFGT S L+YL PFDT+K + S + ++ IL+SI Sbjct: 839 AAQMLTRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +A ++ ++A+ + D EL ++GC+Y Q P+ ++ ++LL E Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAAMRLLTEE 952 >gi|85714424|ref|ZP_01045412.1| multi-sensor diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A] gi|85698871|gb|EAQ36740.1| multi-sensor diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A] Length = 985 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 408/956 (42%), Positives = 627/956 (65%), Gaps = 6/956 (0%) Query: 5 NSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFT 64 +L + A+L L + SP+ A++ +++ S +DLT+I + + QV T Sbjct: 26 MTLHAVRWLAWLTLAFMIFVAASPARAVDAVSVRSDAPAIDLTAILDHQHSDSDRIQVST 85 Query: 65 AADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGS 124 A DGI RR+EV A +W VFALAN +D QL+RLIV PHYRLV S PDLG Sbjct: 86 APGTDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRLVSSGLLWPDLGQ 143 Query: 125 RRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDT 184 RI ++TPS G +R ++ +DVFRIT++PGAV+TF+ME+ T LPQ+YLWEP+ YKD Sbjct: 144 SRIATITPSTGDRPERQESATADVFRITLDPGAVITFVMELRTDKLPQLYLWEPDAYKDK 203 Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244 +NSFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI +DFGF K+++ Sbjct: 204 INSFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLD 263 Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304 +P+G +WRA E L+++L++FLF YL+ NRWH + +IT +A + L ++ + P Sbjct: 264 MPAGAERVWRASGEAILAATLLVFLFAYLNLNRWHVRYAHITLGWLAFLGSLVALALFDP 323 Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364 V + IAR++LA I ++ I+Y + G++RAVLLIP W L+ +W MAI + N Sbjct: 324 AVASGIARMSLALIAVFGFGLIVYLAVHGFDRAVLLIPTWFLLVVWVAAAGMAIEGEVIN 383 Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 DI+ PAL+GGLVLIV+LIGFTV+QH A G + G+ SD ER++LA+ G+GD+VWDWD+ Sbjct: 384 DIVGPALLGGLVLIVMLIGFTVMQHAFAGGGGASGVVSDIERRALALTGAGDLVWDWDVS 443 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 D+V T+P+ ++LGL G++ GP WL +H D+D FR LDS + RRGRL ++R Sbjct: 444 ADKVFTSPETESLLGLKRGTLEGPAAAWLEVLHPLDQDRFRAALDSVLEQRRGRLVQDYR 503 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 +R +D F W ++ RP+ S+G++ R +G D+T+ +K+ E +L ++ DNLTG+PNR Sbjct: 504 LRTSDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTDTRKAEERMLHDSVHDNLTGLPNR 563 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + F+DRL + + T +LRPT+MVID+D++K++ND +G+AVGD +L++L RR+ +LK Sbjct: 564 KLFIDRLNAVATFAKTMPSLRPTLMVIDLDRFKQVNDSVGVAVGDSILLTLARRLTRILK 623 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D LAR++G++FG+IL+SE + +I FA +RK+I PI +REI +TASIG A Sbjct: 624 PQDTLARIAGDQFGLILMSEQDPPRITAFAETIRKTIRAPITFNDREIFLTASIGLALSD 683 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722 + E++K+AELAMYH+K GG+ ++ ++ + +DR+ ++ DL A+E EL + Sbjct: 684 PQTQLTQEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKNDRLSLEADLRRAIERRELAI 743 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 +Y PI+RL D I G EAL +WDHPK G ++ EF+ IAEE +I + F++++ AR + Sbjct: 744 LYQPIVRLEDRSIAGFEALARWDHPKLGRMAPDEFITIAEEAGLIVDLGTFVMDQTARQL 803 Query: 783 ISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W+ PPIF +N++S+ LL ++L +++++S++ + +KL +ES+VM NP Sbjct: 804 AVWQRAIRSQPPIFASVNVSSRQLLRHDLIHDIRSVLSRSSIARGTLKLELTESLVMENP 863 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILR 900 E + +L R+R++G+ L+LDDFGT S LSYL PFDT+K + S + +T IL+ Sbjct: 864 EHAAQMLQRIRELGVKLSLDDFGTGYSSLSYLQRFPFDTIKIDQSFVRTTTHGTRPVILK 923 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 SII +A ++ ++A+ + D EL ++GC+Y Q P+ ++ ++LL + Sbjct: 924 SIIALAHDLSMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADATMRLLAQE 979 >gi|148258155|ref|YP_001242740.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146410328|gb|ABQ38834.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Bradyrhizobium sp. BTAi1] Length = 958 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 402/954 (42%), Positives = 615/954 (64%), Gaps = 6/954 (0%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 +R A L L L + +P+ A++ +++ S +DLT I ++ + QV TA Sbjct: 1 MRLIRCLASLALGLVMCGAAAPAQAVDAVSVRSDAPAIDLTGILDHQRSENDRIQVSTAP 60 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RRIEV A W VFALAN +D QL+RLIV PHYR+VGS F PDLG R Sbjct: 61 GTDGIVRRIEVRAREGGQ--HWIVFALANNTDDQLDRLIVAPHYRVVGSGVFWPDLGLSR 118 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I ++TPS G +R + +DVFR+T++PG+VVTF+ E+ T LPQ+YLWEP YKD VN Sbjct: 119 IATITPSIGDLPERQESPTADVFRVTLDPGSVVTFVAELRTDKLPQLYLWEPEAYKDKVN 178 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 SFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI +DFGF K++++ Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMS 238 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 + +WRA E L+++L++FLF YL+ +RWH + +IT + + L ++ + P V Sbjct: 239 NNAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLFFLGSLVAVALFDPAV 298 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IAR++L I + I+Y G++RAVLLIP W L+ +W M + ++ NDI Sbjct: 299 ASGIARMSLLLIAVLGFALIVYLSSHGFDRAVLLIPTWFLLAVWVGAAGMTVAGQVTNDI 358 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + PAL+GGLVLIV+LIGFTV+QH A G S GI SD ER++LA+ GSGD++WDWD+ D Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGGASTGIVSDVERRALALAGSGDLIWDWDVSAD 418 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 +V T+P+ ++LGL G++ GP WL +H D+D FR LDS + RRGRL +FR+R Sbjct: 419 KVFTSPETESLLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLR 478 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D F W ++ RP+ S+G++ R +G D+TE K + E +L ++ DNLTG+PNR+ Sbjct: 479 TPDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNAEERLLHDSVHDNLTGLPNRKL 538 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+DRL + + + + LRPT+MVID+D++K++ND +GIAVGD +L++L RR+ LK Sbjct: 539 FIDRLAAVANFAKSMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRTLKPQ 598 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D LARL+G++FG+IL+SE + +I FA +RK+I PI EREI +TASIG A Sbjct: 599 DTLARLAGDQFGLILLSEQDPARITAFAETIRKTIRAPIAFNEREIFLTASIGLALSDPQ 658 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVY 724 S +++K+AELAMYH+K GG+ ++ ++ + +DR+ ++ +L ++E E+ ++Y Sbjct: 659 VQLSEDIIKDAELAMYHSKRIGGDRIDVYKPAMRARKNDRLTLESELRRSIERQEITILY 718 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D I G EAL +WDHPK G +S +EF+ IAEE+ +I + F+L++ AR + Sbjct: 719 QPIVRLEDRSIAGFEALARWDHPKLGRMSPNEFITIAEEIGLIVDLGTFVLDQTARQLSV 778 Query: 785 WRDQ-ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ PIF +N++S+ LL ++L ++++++++ + +K+ +ES+VM NPE Sbjct: 779 WQRATRLREPIFASVNVSSRQLLRHDLIHDIRSVLARSSVARGSLKIELTESLVMENPEH 838 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902 + +L R+R++G+ L++DDFGT S L+YL PFDT+K + S + + IL+SI Sbjct: 839 AAQMLTRIRELGVGLSIDDFGTGHSSLAYLQRFPFDTLKIDQSFVRTTARGTRPVILKSI 898 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +A ++ ++A+ + D EL ++GC+Y Q P+ ++ ++LL E Sbjct: 899 IALAHDLGMDVVAEGAESDSDAVELYQLGCEYAQGYVFGEPMDADAAMRLLTEE 952 >gi|115522696|ref|YP_779607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] gi|115516643|gb|ABJ04627.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 958 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 406/953 (42%), Positives = 618/953 (64%), Gaps = 6/953 (0%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 +R A L L L ++ SP++A++ +++ S +DLT++ ++ + QV TA Sbjct: 1 MRLIRCLALLALGLMMVAAGSPAWAVDAVSVRSDAPAIDLTAVLDHQRSEADRIQVSTAP 60 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RR+EV A +W VFALAN +D QL+RLIV PHYR+V S F PDLG R Sbjct: 61 GTDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRIVSSGLFWPDLGLSR 118 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I ++TPS G +R + +D+FR+T++PGAV+TF+ E+ T LPQ+YLWEP+ YKD VN Sbjct: 119 IATLTPSTGDRPERQESPTADIFRVTLDPGAVITFVAELRTDKLPQLYLWEPDAYKDKVN 178 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 SFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI +DFGF K++++ Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSVMFPAAAALAWAVLVYIGVDFGFWGKVLDMS 238 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 SG +WRA E L+++L++FLF YL+ +RWH + +IT +A + L ++ + P V Sbjct: 239 SGAERVWRAAGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IAR++L I I+Y G++RAVLLIP W L+ +W + M + + NDI Sbjct: 299 ASGIARMSLVLIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDI 358 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + PAL+GGLVLIV+LIGFTV+QH A G G+ SD ER++LA+ GSGD++WDWD+ D Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGGAPTGVVSDVERRALALTGSGDLIWDWDVAAD 418 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 +V T+P+ ++LGL G++ G WL +H D+D FR LDS + RRGRL +FR+R Sbjct: 419 KVFTSPETESLLGLKRGTLEGSAARWLEVLHPLDQDRFRAALDSVLDQRRGRLAQDFRLR 478 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D + W ++ RP+ S+G++ R +G D+TE K + E +L ++ DNLTG+PNR+ Sbjct: 479 TPDGHYMWFALKARPVVGSDGEVARVVGTLTDVTEFKNAEERMLHDSVHDNLTGLPNRKL 538 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+DRL + S T NLRPTVMVID+D++K++ND +GIAVGD +L++L RR+ +LK Sbjct: 539 FIDRLNAVATFSKTMPNLRPTVMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 598 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D LARL+G++F +IL+SE +S +I FA +RK+I PI EREI +TASIG A Sbjct: 599 DTLARLAGDQFALILLSEQDSARITAFAETIRKTIRAPIAFNEREIFLTASIGLALADPQ 658 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724 + E++K+AELAMYH+K GG+ ++ ++ + DR+ ++ +L A+E SEL ++Y Sbjct: 659 AQLTDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRLTLESELRRAIERSELTILY 718 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D + G EAL++WDHPK G +S EF+ IAEE +I + F+L++ A+ + Sbjct: 719 QPIVRLEDRAVSGFEALVRWDHPKLGRMSPVEFISIAEETGLIIDLGTFVLDQTAKQLSV 778 Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ PIF +N++S+ LL ++L +++++S+ + +KL +ES+VM NPE Sbjct: 779 WQRAMRSREPIFASVNVSSRQLLRHDLLHDIRSVLSRNSVARGTLKLELTESLVMENPEH 838 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902 + +L R+R++GI L+LDDFGT S L+YL PFDT+K + S + ++ IL+SI Sbjct: 839 AAQMLQRIRELGIGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I +A ++ ++A+ + D EL ++GC++ Q P+ ++ ++LL E Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEFAQGFAFGEPMDADAAMRLLTE 951 >gi|222147812|ref|YP_002548769.1| hypothetical protein Avi_1072 [Agrobacterium vitis S4] gi|221734800|gb|ACM35763.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 985 Score = 905 bits (2340), Expect = 0.0, Method: Composition-based stats. Identities = 503/936 (53%), Positives = 684/936 (73%), Gaps = 2/936 (0%) Query: 30 FAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWA 89 A EP+ IS D LDLT+ T I++NQGE FQV TAA DGI RRIEV ASS +H+GDWA Sbjct: 50 HAAEPVKISRDDTALDLTATTEIHLNQGEAFQVSTAAGSDGIRRRIEVRASSAQHQGDWA 109 Query: 90 VFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVF 149 VFALAN SD QLER+IV PHYRLV S F PDLGS+RIIS+TPSEGFSLDR+P+ D+DVF Sbjct: 110 VFALANVSDEQLERVIVAPHYRLVNSKVFWPDLGSQRIISITPSEGFSLDRVPSDDADVF 169 Query: 150 RITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIF 209 RIT+NPGAVVTF+ E++TPNLPQIYLWEP+ YKDT+NSFTLYRGI++G++ LLA+FLTI Sbjct: 170 RITLNPGAVVTFVAELATPNLPQIYLWEPDAYKDTINSFTLYRGIVLGISGLLAVFLTIL 229 Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269 ++V +SML ++AW VL YI +DFGFL KL+++ + IWRA +E+ L+S +IFL Sbjct: 230 FVVRGTSMLPAAASLAWAVLAYICVDFGFLGKLISITTHSEQIWRAGAEVGLASGFVIFL 289 Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329 F YL+ NRWH +GY TF+ I + +LF ++ Y P + A IAR++ A I+Y Sbjct: 290 FTYLNLNRWHVNLGYATFAWILGLVLLFGVAIYDPSIAAGIARLSFALTATAGIALIVYL 349 Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389 G+ Y+RA+LL+P W LI +W I WM +T RL NDIIQPA G LVLIV+LIGFTV+QH Sbjct: 350 GLNRYDRAILLVPTWTLIIVWLIAGWMTVTGRLSNDIIQPAHGGALVLIVLLIGFTVMQH 409 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 A G ++QG+FSD ERQSLA+ G+GDIVWDWD+ RDRV T PDI+T LGL+ G++HG Sbjct: 410 AFAGGGYNQGLFSDLERQSLALTGAGDIVWDWDVARDRVVTIPDISTRLGLSHGALHGAA 469 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 RNW+P +H +DRD FR LD + ++RGRL +EFR+RA D FHW+ IR RP+ +NG+I Sbjct: 470 RNWIPSLHPDDRDRFRATLDVLLEHKRGRLNHEFRIRADDGHFHWLHIRARPVLGANGEI 529 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 +R IG D+TEQK +++ +L +A DNLTG+PNR+ FLDRL T+L ++AT D +RPTVM Sbjct: 530 IRCIGTIADVTEQKNTVDRLLQDAINDNLTGLPNREVFLDRLQTLLTVTATADTVRPTVM 589 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++DID + ++ND+LGI+ GD++L++LTRR+ LLK D LARLSG++FG+ILISE + K Sbjct: 590 IVDIDNFGRVNDMLGISAGDNILIALTRRLRRLLKPQDTLARLSGDQFGLILISERDPAK 649 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +ADFA AM K+I +PIN REI +TASIG SW + +++ +L +AELAMY AK GG Sbjct: 650 VADFADAMNKAIMVPINFANREINLTASIGLVSWVDQQESAAGLLSDAELAMYRAKRGGG 709 Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N VE FR + S+++ ++ +L AVE EL +VY PI+RL DEE+ G EAL++W+HP Sbjct: 710 NKVEPFRPAFRGTVSEKLQLETELARAVERGELTMVYQPIVRLDDEELAGFEALMRWEHP 769 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 K G IS SEF+ +AE +I + +F LER A D++ W Q PIF+ +N++S L++ Sbjct: 770 KRGTISPSEFIPLAESCDLIMPLGMFALERAATDLVEWEKQTGEMPIFVSVNLSSAQLIN 829 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 N L +++L+S+ +P+R+KL +ESVV+ NPE++RL+L +L+ IG+SL LDDFGT Sbjct: 830 NTLYTDIRSLLSRVNCNPARLKLELTESVVVENPEQARLVLEKLKDIGLSLALDDFGTGY 889 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 S LSYL PFDT+K + L+T ++E+R +LRS+I MAK++ ++A+ I E D EL Sbjct: 890 SSLSYLTRFPFDTLKLDRELVTDTSERRNILLRSVIGMAKDMGMDVVAEGIASEDDGDEL 949 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 +MGC Y Q +P+G ++++LLK++ K Sbjct: 950 AQMGCHYGQSFLYGAPVGPEAVMRLLKDQQQRAKRA 985 >gi|86751593|ref|YP_488089.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86574621|gb|ABD09178.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 958 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 399/954 (41%), Positives = 612/954 (64%), Gaps = 6/954 (0%) Query: 7 LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66 +R A L L L ++ + A++ +++ S +DLT + + + Q+ TA Sbjct: 1 MRLTRCLALLALGLMMIAAAPQAHALDAVSVRSDAPAIDLTGVLDHQRSDTDRIQISTAP 60 Query: 67 DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126 DGI RR+EV A +W VFALAN +D QL+RLIV PHYR+V S F PDLG R Sbjct: 61 GSDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRMVSSGLFWPDLGLSR 118 Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186 I ++TPS G +R + +D+FR+T++PG+V+TF+ E+ T LPQ+YLWEP YKD VN Sbjct: 119 IATITPSTGDRPERQDSGTADIFRVTLDPGSVITFVAELRTDKLPQLYLWEPEAYKDKVN 178 Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 SFTLY GI+IG++ LLA+ LTI ++V S M A+AW VL YI IDFGF SK+ ++ Sbjct: 179 SFTLYHGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGIDFGFWSKVFDMS 238 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 +G +WRA E L+++L++FLF YL+ +RWH + +IT +A + L ++ + P V Sbjct: 239 AGAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVGLALFDPAV 298 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IAR++L I ++Y G++RAVLLIP W L+ IW I MA+ + NDI Sbjct: 299 ASGIARMSLVLIAFAGFGLVVYLSTHGFDRAVLLIPTWFLLVIWVIASGMAVAGSVTNDI 358 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + PAL+GGLVLIV+LIGFTV+QH A + G+ SD ER++LA++GSGD++WDWD+ D Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGSGATGGVVSDVERRALALIGSGDLIWDWDVSAD 418 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 +V T+P+ +LGL G++ G +WL +H D+D FR LDS + RRGRL FR+R Sbjct: 419 KVFTSPETEALLGLKRGALEGSAASWLEVLHPLDQDRFRAALDSVLDQRRGRLTQHFRLR 478 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D F W ++ RP+ ++G++ R +G D+TE K + E +L ++ DNLTG+PNR+ Sbjct: 479 TPDGHFMWFALKARPVVGADGEVTRVVGTLTDVTEAKNAEERMLHDSVHDNLTGLPNRKL 538 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+DRL + + + T LRPT+MVID+D++K++ND +GIAVGD +L++L RR+ +LK Sbjct: 539 FMDRLGAVANFAKTMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 598 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D LAR++G++FG+IL+SE + KI FA +RK+I PI +REI +TASIG A Sbjct: 599 DTLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQ 658 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724 S E++K+AELAMYH+K GG+ ++ ++ + DR+ ++ +L A+E E+ ++Y Sbjct: 659 TQLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERQEITILY 718 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+RL D + G EAL +WDHPK G ++ SEF+ IAEE+ +I + LF++++ A+ + Sbjct: 719 QPIVRLEDRSVAGFEALARWDHPKLGRMAPSEFIAIAEEIGLIVELGLFVMDQTAKQLAI 778 Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ PIF +N++S+ LL ++L ++ ++S++ + +KL +ES+VM NPE Sbjct: 779 WQRAMRAREPIFASVNVSSRQLLRHDLLHDIRTVLSRSSIARGTLKLELTESLVMENPEH 838 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902 + +L R+R++G L+LDDFGT S L+YL PFDT+K + S + ++ IL+SI Sbjct: 839 AAQMLTRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +A ++ ++A+ + D EL ++GC+Y Q P+ ++ ++LL E Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAAMRLLTEE 952 >gi|27376613|ref|NP_768142.1| hypothetical protein bll1502 [Bradyrhizobium japonicum USDA 110] gi|27349754|dbj|BAC46767.1| bll1502 [Bradyrhizobium japonicum USDA 110] Length = 944 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 399/939 (42%), Positives = 603/939 (64%), Gaps = 6/939 (0%) Query: 21 FLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSAS 80 +L P+ A++ +++ +DLT + + + QV TA DGI RRIEV A Sbjct: 1 MILVAALPARALDAVSVRGDAPAIDLTGVLEHQRSDADRIQVSTAPGTDGIVRRIEVRAR 60 Query: 81 SIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDR 140 +W VFALAN +D QL+RLIV PHYR+V S PDLG RI ++TPS G +R Sbjct: 61 EGGQ--NWVVFALANNTDDQLDRLIVAPHYRIVSSGLLWPDLGLSRIATITPSTGDRPER 118 Query: 141 IPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVAS 200 + +DVFR+T++PGAV+TF+ E+ T LPQ+YLWEP YKD VNSFTLY+GI+IG++ Sbjct: 119 QESPTADVFRVTLDPGAVITFVAELRTDKLPQLYLWEPEAYKDKVNSFTLYQGIVIGISG 178 Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260 LLA+ LTI ++V S M A+AW VL YI +DFGF K++++ + IWRA E Sbjct: 179 LLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSNNAERIWRAAGEAI 238 Query: 261 LSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL 320 L+++L++FLF YL+ +RWH + +IT +A + L ++ + P V + IARI+L I Sbjct: 239 LAATLLVFLFAYLNLSRWHVRYSHITVGWLAFLGSLVALALFDPAVASGIARISLVLIAF 298 Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380 I+Y G++RAVLLIP W L+ +W + M + + NDI+ PAL+GGLVLIV+ Sbjct: 299 AGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVGPALLGGLVLIVM 358 Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 LIGFTV+QH A G + G+ SD ER++LA+ GSGD++WDWD+ D+V T+P+ +LGL Sbjct: 359 LIGFTVMQHAFAGGGATTGVVSDIERRALALAGSGDLIWDWDVSADKVFTSPETEALLGL 418 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G++ GP +WL +H D+D FR LDS + RRGRL +FR+R D F W ++ R Sbjct: 419 KRGTLEGPAASWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRTPDGHFMWFALKAR 478 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ S+G++ R +G D+TE + + E +L ++ DNLTG+PNR+ F+DRL + + T Sbjct: 479 PVVGSDGEVSRVVGTLTDVTELRNAEERLLHDSVHDNLTGLPNRKLFMDRLGAVAHFAKT 538 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 LRPT+MVID+D++K++ND +GIAVGD +L++L RR+ +LK D LARL+G++FG+I Sbjct: 539 MPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQDTLARLAGDQFGLI 598 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L+SE + +I FA +RK+I PI EREI +TASIG A + E++K+AELA Sbjct: 599 LLSEQDPARITAFAETIRKTIRAPIAFNEREIFLTASIGLALSDPQTQLTDEIIKDAELA 658 Query: 681 MYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MYH+K GG+ ++ ++ + DR+ ++ +L A+E EL ++Y PI+RL D + G Sbjct: 659 MYHSKRIGGDRIDVYKPAMRARKTDRLTLESELRRAIERQELTILYQPIVRLEDRSVAGF 718 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFIL 797 EAL +WDHPK G ++ SEF+ IAEE +I + +F+L++ A+ + W+ PIF Sbjct: 719 EALARWDHPKLGRMAPSEFITIAEETGLIVDLGMFVLDQTAKQLSIWQRAMRSREPIFAS 778 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++S+ LL ++L ++ ++S++ + +KL +ES+VM NPE + +L R+R++G Sbjct: 779 VNVSSRQLLRHDLIHDIRTVLSRSSVARGTLKLELTESLVMENPEHAAQMLTRIRELGTG 838 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAK 916 L+LDDFGT S L+YL PFDT+K + S + + IL+SII +A ++ ++A+ Sbjct: 839 LSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTNRGTRPVILKSIIALAHDLGMDVVAE 898 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + D EL +MGC+Y Q P+ ++ ++LL E Sbjct: 899 GAETDSDAVELYQMGCEYAQGFAFGEPMDADAAMRLLTE 937 >gi|328545002|ref|YP_004305111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC-like protein [polymorphum gilvum SL003B-26A1] gi|326414744|gb|ADZ71807.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC-like protein [Polymorphum gilvum SL003B-26A1] Length = 979 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 391/932 (41%), Positives = 610/932 (65%), Gaps = 6/932 (0%) Query: 29 SFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDW 88 ++A+EPI + L+LT + + + G QV TA DGI RRIEV + +W Sbjct: 42 AYALEPIQVPLDVDALELTDVVEFHRDAGSRLQVSTAPGADGIVRRIEVMSRD-GENTNW 100 Query: 89 AVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDV 148 AVFAL N+SD Q++RLIV P ++LVGS PDLGS R+ S+TPS+G + +R + ++DV Sbjct: 101 AVFALTNSSDEQIDRLIVAPFFQLVGSRLIWPDLGSSRVASITPSQGIAPERQKSLEADV 160 Query: 149 FRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTI 208 F IT++PGA+VTF+ E++TP LPQ+ +WEP+ YK+TVN++TLYRGII+G++ LLA+FLTI Sbjct: 161 FLITLDPGAIVTFVAELTTPELPQLRVWEPDAYKETVNAYTLYRGIILGISGLLALFLTI 220 Query: 209 FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF 268 ++V ++M T A+AW VL Y+ IDFGF S++ NL GE ++RA +E+ L++SLIIF Sbjct: 221 LFVVKGTAMFPATAALAWAVLAYLCIDFGFWSRVFNLTQGEDQLYRASAEVMLAASLIIF 280 Query: 269 LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY 328 L+ YL+ NRWH + ++ + + + L ++ + P + A IARI L I + +I Sbjct: 281 LYTYLNLNRWHIRYSHLALATLTMLLGLLGVAVWDPSIAAGIARIALGIIGVLGFVTVIV 340 Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++GY+RA++LIP W L+ +W +G M +T L NDI+QPAL GGLVLIV+LIGFTV+Q Sbjct: 341 LALQGYDRAIMLIPTWFLLMVWLVGAAMTVTGALANDIVQPALGGGLVLIVLLIGFTVMQ 400 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 H A G QG+ SD ER++LA+ G+GDI+WDWD+ RDR+ T ++ +L L G++ GP Sbjct: 401 HAFAGGAIVQGLISDVERRALALTGAGDIIWDWDVDRDRIYTGNEVEDLLNLRHGTLDGP 460 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 R WL +H DRD FR LD+ + RRG++Q +FR+R+ D F W +R RP+ S+ + Sbjct: 461 AREWLDVLHPQDRDRFRATLDAVIDQRRGKVQQDFRLRSEDGHFRWFRLRARPILGSDAE 520 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPT 567 ++R +G DIT+QK + E +L +A DNLTG+ NR+ F+DRL L + D +P Sbjct: 521 VIRCVGTLLDITDQKTAEERMLHDAVHDNLTGLANRELFMDRLNAALARARVDAAAIKPA 580 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+++++D++K++ND +GI+ GD +L+++ RR+ LL+ D LARLSG+++G+IL+SE + Sbjct: 581 VLILNLDRFKQVNDGIGISAGDSILLTVARRLDRLLQPQDSLARLSGDQYGLILLSEQEA 640 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 +IA A ++RK++ PI +RE+ +T SIGFA + ++ E++ +AE+A+ HAK Sbjct: 641 DRIAQVADSLRKAVRAPITFGDREVFLTCSIGFALHDGGRQSAEELVTDAEIALNHAKRL 700 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG+ E FR + + ++ +L +++ L + + PI+RL D+ + G E L +W Sbjct: 701 GGDRQEVFRPILRPLGRNVIDLESELRKSIKEETLGVFFQPIVRLADKSVAGFEVLARWK 760 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKD 804 HPK G IS SEF+ IAE+ +I + L++LE+ A+ + W+ + MP P+F+ +N++S+ Sbjct: 761 HPKRGQISPSEFIPIAEQSGLINELGLYVLEKGAKQLAEWQQRLPMPQPLFVSVNMSSRQ 820 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 LL ++L ++A++S++ +KL +ESVVM NPE S +L RLR +G L+LDDFG Sbjct: 821 LLRHDLINDVKAILSRSSIVHGTLKLELTESVVMANPEYSAKVLERLRALGAGLSLDDFG 880 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 T S L+YL PFDT+K + S + R ILRSI+ + ++ ++A+ GE D Sbjct: 881 TGYSSLAYLQRFPFDTIKIDQSFVRPNGRAARPVILRSIVALGHDLGMAVVAEGAEGESD 940 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 EL ++GC+Y Q + + L+++ Sbjct: 941 ALELLQLGCEYAQGYYFGQAMSAEEATALIRK 972 >gi|75676935|ref|YP_319356.1| multi-sensor diguanylate cyclase/phophodiesterase [Nitrobacter winogradskyi Nb-255] gi|74421805|gb|ABA06004.1| multi-sensor diguanylate cyclase/phosphodiesterase [Nitrobacter winogradskyi Nb-255] Length = 960 Score = 900 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 415/956 (43%), Positives = 625/956 (65%), Gaps = 6/956 (0%) Query: 5 NSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFT 64 +L A+L L L + SP+ A++ +++ S +DLT+I + + QV T Sbjct: 1 MTLHLVRRLAWLTLALMIFVAASPARAVDAVSVRSDAPAIDLTAILDHQHSDSDRIQVST 60 Query: 65 AADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGS 124 A DGI RR+EV A +W VFALAN +D QL+RLIV PHYRLV S PDLG Sbjct: 61 APGTDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRLVSSGLLWPDLGQ 118 Query: 125 RRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDT 184 RI ++TPS G +R ++ +DVF+IT++PGAV+TF+ME+ T LPQ+YLWEP+ YKD Sbjct: 119 SRIATITPSTGDRPERQESATADVFQITLDPGAVITFVMELRTDRLPQLYLWEPDAYKDK 178 Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244 VNSFTLY+GI+IG++ LLA+ LTI ++V S M A+AW VL YI +DFGF K+++ Sbjct: 179 VNSFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLD 238 Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304 +P+G IWRA E L+++L++FLF YL+ NRWH + +IT + + L ++ + P Sbjct: 239 MPAGAERIWRASGEAILAATLLVFLFAYLNLNRWHVRYSHITLGWLFFLGSLVALALFDP 298 Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364 V + IARI+LA I ++ I+Y + G++RAVLLIP W L+ +W MAI ++ N Sbjct: 299 AVASGIARISLALIAVFGFGLIVYLAVHGFDRAVLLIPTWFLLVVWVAAAGMAIEGKVVN 358 Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 DI+ PAL+GGLVLIV+LIGFTV+QH A G + G+ SD ER++LA+ G+GD+VWDWD+ Sbjct: 359 DIVGPALLGGLVLIVMLIGFTVMQHAFAGGGGASGVVSDIERRALALTGAGDLVWDWDVS 418 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 D+V T+ + ++LGL G++ GP WL +H D+D FR LDS + RRGRL +FR Sbjct: 419 ADKVFTSLETESLLGLKRGTLEGPAAGWLEVLHPLDQDRFRAALDSVLEQRRGRLVQDFR 478 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 +RA+D F W ++ RP+ S+G++ R +G D+TE +K+ E +L ++ DNLTG+PNR Sbjct: 479 LRASDGHFMWFALKARPVVGSDGEVSRVVGTLADVTETRKAEERMLHDSVHDNLTGLPNR 538 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + F+DRL + L+ T LRPT+MVID D++K++ND +G+AVGD +L++L RR+ +LK Sbjct: 539 KLFIDRLNAVATLAKTMPGLRPTLMVIDFDRFKQVNDSVGVAVGDSILLTLARRLTRILK 598 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D LARLSG++FG+IL+SE + +I FA +RK+I PI +REI +TASIG A Sbjct: 599 AQDTLARLSGDQFGLILMSEQDPPRITAFAETIRKTIRAPIAFNDREIFLTASIGLALSD 658 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722 S +M+K+AELAMYH+K GG+ ++ ++ + +DR+ ++ +L A+E E+ + Sbjct: 659 PQTQLSDQMIKDAELAMYHSKRIGGDRIDVYKPAMRARKNDRLSLEAELRRAIERQEITV 718 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 +Y PI+RL D I G EAL +WDHPK G ++ EF+ IAEE +I + F++++ AR + Sbjct: 719 LYQPIVRLQDRSIAGFEALARWDHPKLGRMAPDEFITIAEEAGLIVDLGTFVMDQTARQL 778 Query: 783 ISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W+ PPIF +N++S+ LL ++L +++++S++ + +KL +ES+VM NP Sbjct: 779 AVWQRAMRSQPPIFASVNVSSRQLLRHDLIHDIRSVLSRSSIARGTLKLELTESLVMENP 838 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILR 900 E + +L R+R++G+ L+LDDFGT S LSYL P DT+K + S + ST IL+ Sbjct: 839 EHAAQMLQRIRELGVGLSLDDFGTGYSSLSYLQRFPLDTIKIDQSFVRTSTRGTRPVILK 898 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 SII +A ++ ++A+ + D EL +MGC+Y Q P+ ++ ++LL + Sbjct: 899 SIIALAHDLGMDVVAEGAETDSDAVELYQMGCEYAQGFAFGEPMDVDATMRLLAQE 954 >gi|217977438|ref|YP_002361585.1| diguanylate cyclase/phosphodiesterase [Methylocella silvestris BL2] gi|217502814|gb|ACK50223.1| diguanylate cyclase/phosphodiesterase [Methylocella silvestris BL2] Length = 965 Score = 893 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 383/932 (41%), Positives = 594/932 (63%), Gaps = 5/932 (0%) Query: 27 SPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRG 86 P+ AIE + + +V+DLT Y + G+ V TA DGI RRIEV A R Sbjct: 27 GPANAIESVRVPLDSQVIDLTKAVESYNSDGDRLLVSTAPGSDGIVRRIEVRAREEGTRP 86 Query: 87 DWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDS 146 +W VFAL N + Q+ERLIV PH+RLVGS PDLG+ RI ++T S+GF +R + D+ Sbjct: 87 NWIVFALTNDTSEQIERLIVAPHFRLVGSGVIWPDLGATRISAITASQGFPPEREDSEDA 146 Query: 147 DVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFL 206 DVFR+T++PG +T++ E+ TPNLPQ++LWEP+ YKD + S LY+GIIIGVA LLA+FL Sbjct: 147 DVFRLTLDPGTTITYVAELRTPNLPQLHLWEPDAYKDRMTSLALYKGIIIGVAGLLALFL 206 Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266 TI ++V + + A+AW VL Y+ IDFGF +++ IWRA +E L+++L+ Sbjct: 207 TIVFVVRGAVIFPAAAALAWTVLAYVCIDFGFWGRIIGSEGQSDRIWRAGTESILAATLL 266 Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326 +FLF YL+ NRWH + ++ + +A L +S Y V A +ARI++A+I + Sbjct: 267 VFLFAYLNLNRWHVRASHVAAIWLIFLAALVGLSVYDAPVAAGVARISIATIGAVGFVLV 326 Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 +Y + GY+RAV+LIP W L+ W +G +T L ND++ PAL+GGLVLIV+LIGFT+ Sbjct: 327 LYLAIHGYDRAVMLIPTWFLLLAWIVGAAFTVTGALTNDLVSPALIGGLVLIVMLIGFTI 386 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 +Q+ + G D ER++LA GSGDI++DWD+ DRV +P++ LGL G++ Sbjct: 387 MQNAFVGAGLAHGAVPDAERKALAFTGSGDIIFDWDVSADRVYVSPEVEAQLGLQRGALE 446 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 GP NW +H ++RD +R LD+ + RRGR+ +FR+RAAD Q W ++ RP+ ++ Sbjct: 447 GPASNWFDVLHQSERDRYRACLDAMLEQRRGRINQDFRLRAADGQHFWFRLKARPVIGAD 506 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G+++R +G+ +DITE K + E +L +A DNLTG+PNR+ F DRL L L+ +D +RP Sbjct: 507 GEVVRIVGVLSDITEIKTAEERLLHDAVHDNLTGLPNRELFFDRLDAALSLAQSDPKIRP 566 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 VM IDID++K+IN+ +G++ GD +L+++ RR+G +LK D LARLSG++F ++++SE+ Sbjct: 567 AVMSIDIDRFKQINEQVGLSAGDSILLTVARRLGRILKPQDTLARLSGDQFILLIVSESE 626 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAK 685 + +I A R+ + P++ ++EI +TASIG A + +MLK+AE+AM H K Sbjct: 627 ADQITALANTARRVASTPVSFSDKEIPLTASIGLAFYDPQLHGKREDMLKDAEIAMRHGK 686 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 GGN +E FR + + DL A++ E+ +V+ PI+RL D + G EAL++ Sbjct: 687 RLGGNRIEVFRATMRSLRSDRFGLAADLKRALDRGEMKVVFQPIVRLEDRTVAGFEALLR 746 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIAS 802 WDHP+ G ++ EF+ +AEE +I + +F ++R AR++ W+ + PPIF+ +N++S Sbjct: 747 WDHPRLGRLNPGEFISVAEETGVIIDLGIFAMDRAARELAVWQRALDVDPPIFVSVNVSS 806 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + LL ++L + +++++S+ +P +KL +ES+VM NPE + +L R+R +G L+LDD Sbjct: 807 RQLLRHDLLQDVKSVLSRVEIAPGSLKLELTESLVMENPEYAAQILTRIRDLGAGLSLDD 866 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 FGT S L+YL PFDT+K + S + + R ILRSI+ +A ++ ++A+ E Sbjct: 867 FGTGYSSLAYLQRFPFDTIKIDRSFVRQNGNGARPVILRSIVALAHDLGMEVVAEGAEAE 926 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 D EL ++GC++ Q P+ KL+ Sbjct: 927 SDAIELYQLGCEFAQGFAFGHPISAAEARKLV 958 >gi|220920316|ref|YP_002495617.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans ORS 2060] gi|219944922|gb|ACL55314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC-like protein [Methylobacterium nodulans ORS 2060] Length = 959 Score = 888 bits (2295), Expect = 0.0, Method: Composition-based stats. Identities = 376/933 (40%), Positives = 583/933 (62%), Gaps = 5/933 (0%) Query: 26 VSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHR 85 S + A+E + + + +DLT Y + G+ Q+ TA DGI RRI V A R Sbjct: 20 PSAARALEAVRVGLDAQAIDLTPAIERYRSDGDLIQISTAPGKDGIVRRIAVKARETGAR 79 Query: 86 GDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSD 145 DW VFAL N +D Q++RL+V PH+RLVGS PDLG RI ++T S+G +R + D Sbjct: 80 PDWIVFALTNDTDEQIDRLLVAPHFRLVGSGIIWPDLGGSRIAAITASQGIRPERDESPD 139 Query: 146 SDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIF 205 +D F +T++PG VTF+ E+ TPN+PQ+YLW+ + Y+ TLY+GIIIG+A LLA+F Sbjct: 140 ADQFTVTLDPGTTVTFVAELRTPNVPQLYLWDQDAYRKKATGLTLYKGIIIGIAGLLALF 199 Query: 206 LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL 265 LT+ ++V + + A+AW VL Y IDFGF ++ + ++RA +E L ++L Sbjct: 200 LTVVFVVKGAIIFPAAAALAWSVLAYTCIDFGFFQRIFPVTEAAERVYRASAEAVLGATL 259 Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYF 325 ++FLF YL+ RWH + ++ + +A L ++ P V A +ARI++A++ Sbjct: 260 LVFLFAYLNLARWHVRYSHVALLWLIFLAGLVALAVVDPPVAAGVARISIATVAGVGLLL 319 Query: 326 IIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384 ++Y GY+RA+LLIP W+L+ W + AIT +L ND++QPAL+GGLVLIV+LIGF Sbjct: 320 VVYLAAHNGYDRAILLIPTWLLLTAWVVAAGFAITGQLRNDLVQPALIGGLVLIVMLIGF 379 Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 TV+QH A G + SD ER++LA+ G+GD+V+DWD+ DRV P+I + LGL G+ Sbjct: 380 TVLQHAFAGGGIGTAVVSDTERRALALTGAGDVVFDWDVPGDRVFAGPEIESQLGLKRGA 439 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + GP NWL +H D D + LD+ + RRGR+ +FR+RAA ++W ++ RP+ Sbjct: 440 LEGPAANWLALLHPFDVDRYSAALDTVIEERRGRICQDFRLRAAAGPYYWFRLKARPVIG 499 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 ++G+++R +G D+TE K + E +L +A DNLTG+PNR+ F DRL L L+A D L Sbjct: 500 ADGEVIRIVGTIADVTEVKIAEERLLHDAVHDNLTGLPNRELFNDRLDAALTLAAQDPRL 559 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 +PTV V+DID++K++ND +G++ GD +L++L+RR+G LL+ D LAR++G+ +IL+SE Sbjct: 560 KPTVFVLDIDRFKQVNDAIGLSAGDSILLTLSRRLGRLLRPQDTLARIAGDELAVILVSE 619 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYH 683 + +I FA +R++I PI +REI +T SIG + ++ KNAE+AM Sbjct: 620 RDPDRIIAFADMIRRAITTPITYADREIFLTPSIGVVLHEAGSNPKRDQIFKNAEIAMIQ 679 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +GG+ +E +R + R+M++ DL A+E +E+ +++ PI+RL D + G EAL Sbjct: 680 AKRQGGDRIEVYRPTMRSDRGDRLMLESDLRQALERNEIKVLFQPIVRLEDRTVAGFEAL 739 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINI 800 ++WDHPK G I F+ IAEE +I + +F LER A ++ +W+ PP+F +N+ Sbjct: 740 LRWDHPKHGRIPPQTFIPIAEESGLIVDLGVFALERTAAELAAWQQALVVEPPLFASVNV 799 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +S+ LL ++L ++ ++++T +P +KL +ES+VM NPE + +L R+ ++G L+L Sbjct: 800 SSRQLLRHDLLHDVKTVLARTGVAPGSLKLELTESLVMENPEYAAQMLARIAELGAGLSL 859 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 DDFGT S L+YL PFDT+K + S + R ILRSI+ MA+ + I+A+ Sbjct: 860 DDFGTGYSALAYLQRFPFDTIKIDQSFVRQMANGRSVILRSIVRMAQELGLEIVAEGAET 919 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 E D + L +GCDY Q P+ + +L+ Sbjct: 920 EADARALAEIGCDYAQGFAFGEPMSVHQARQLV 952 >gi|182677712|ref|YP_001831858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Beijerinckia indica subsp. indica ATCC 9039] gi|182633595|gb|ACB94369.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Beijerinckia indica subsp. indica ATCC 9039] Length = 950 Score = 888 bits (2295), Expect = 0.0, Method: Composition-based stats. Identities = 393/943 (41%), Positives = 610/943 (64%), Gaps = 7/943 (0%) Query: 18 LVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEV 77 +VL+ L + P+ A+E + + + +DLT Y ++G+ QV TA DGI RRIEV Sbjct: 1 MVLWALGLSLPAAAVEAVRVPLDAQAIDLTHSVVSYRSEGDRLQVSTAPGSDGIVRRIEV 60 Query: 78 SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFS 137 SA + W VFAL N +D Q+ERLIV PH+RLVGS PDLG+ RI ++T S+GF+ Sbjct: 61 SAREAGTQPSWIVFALTNDTDEQIERLIVAPHFRLVGSGVIWPDLGATRISAITASQGFA 120 Query: 138 LDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG 197 +R N+D+DVFR+T++PG +T++ E+ TPNLPQIYLWEP+ YKD + S TLY+GI+IG Sbjct: 121 PEREDNNDADVFRLTLDPGTTITYVAELRTPNLPQIYLWEPDAYKDKITSLTLYKGIVIG 180 Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257 +A LLA+FLTI ++V + + A+AW VL Y+ IDFGF SKL +L IWRAC+ Sbjct: 181 IAGLLALFLTIVFVVRGAVIFPAAAALAWTVLAYVCIDFGFWSKLFDLEGPAERIWRACT 240 Query: 258 EIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLAS 317 E L+++L++FLF YL+ NRWH + +IT + + L ++ Y V A +ARI+LA+ Sbjct: 241 ETVLAATLLVFLFAYLNLNRWHVRASHITAIWLVFLTALVGLAIYDAPVAAGVARISLAT 300 Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 I +IY GY+RAV+LIP W L+ W +G +T +L ND++ PAL+GGLVL Sbjct: 301 IAGIGFILVIYLAAHGYDRAVMLIPTWFLLLAWIVGAAFTVTGKLTNDLVSPALIGGLVL 360 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 IV+LIGFT++Q+ Q SD ER++LA+ G GD ++DW++ D+V P++ Sbjct: 361 IVMLIGFTIMQNAFTGLALGQHAVSDVERKALALSGCGDNIFDWNVPADQVYVAPEVEAH 420 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 LGL G++ GP WL +H DRD ++ LD+ + RRGR+ EFR+RA D Q+ W + Sbjct: 421 LGLDRGALEGPASAWLDLLHPLDRDRYQASLDTMLEQRRGRIHQEFRLRAVDGQYFWFLF 480 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + RP+ +G+++R IG D+TE + S E +L +A DNLTG+PN+ F DR+ L Sbjct: 481 KARPVVAQDGEVIRIIGTLADVTENRISQERLLHDAVHDNLTGLPNQALFFDRIDAALVF 540 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 +A D ++P+++ +DID++K +N+ +G++ GD +L+++ RR+G +LK D LAR+SG++F Sbjct: 541 AANDPEIQPSIISLDIDRFKTVNETIGLSAGDSILLTIARRLGRILKPQDALARISGDQF 600 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKN 676 I+++SE++ I FA +++ ++ P++ EREI +TASIG A + + +++KN Sbjct: 601 AILILSEHDPQAITAFANVVQRVVSTPVSFAEREIPLTASIGVALFDPYQPQSREDLVKN 660 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 AE+AM+HAK GGN +E FR S RSDR+ ++ DL +E E+ + + PIIRL D Sbjct: 661 AEIAMHHAKRGGGNRIELFRASLRGLRSDRIALEADLRRCLERGEMKVYFQPIIRLEDRT 720 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPP 793 + G E +++WDHP+ G ++++EF+ +AEE I + +F LER R++ +W++ N PP Sbjct: 721 VAGFETVLRWDHPRLGRLTAAEFLPLAEETGFIVDLGIFALERTGRELATWQNALNVDPP 780 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 IF +NI+S+ LL ++L ++ L+++ +P +KL SES++M NPE + +LGR+R+ Sbjct: 781 IFASVNISSRQLLRHDLLHDIKTLLARFHVAPGTLKLEVSESLIMENPEYAAQMLGRIRE 840 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIE 910 +G L+LDDFGT S L+YL PFDT+K + S + + + R ILR+++ +A ++ Sbjct: 841 LGAGLSLDDFGTGYSSLAYLQRFPFDTIKIDRSFVHQNGQGQGSRSVILRAMVTLAHDLG 900 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++A+ E D EL ++GC+Y Q P+ KL+ Sbjct: 901 MDVVAEGAESESDAIELYQLGCEYAQGHAFGHPISMADARKLV 943 >gi|323136603|ref|ZP_08071684.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Methylocystis sp. ATCC 49242] gi|322397920|gb|EFY00441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Methylocystis sp. ATCC 49242] Length = 956 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 390/948 (41%), Positives = 598/948 (63%), Gaps = 5/948 (0%) Query: 11 FEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDG 70 + FL + L + A+E + + R +DLT + + +QG+ QV TA DG Sbjct: 2 RLQTFLTALFLLFVSATAVLAMESVRVPQGARAIDLTHVVEKHSSQGDRLQVSTAPGSDG 61 Query: 71 ISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISV 130 I RRIEV A R +W VFAL N +D Q+ERLIV PH+RL GS PDLGS RI ++ Sbjct: 62 IVRRIEVGAREAGSRPNWIVFALTNDTDEQIERLIVAPHFRLQGSGVIWPDLGSTRINAI 121 Query: 131 TPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTL 190 T S+GF + ++D+DVFR+T++PG VT++ E+ TPNLPQ+YLWEP YKD V S TL Sbjct: 122 TASQGFPPEAEDSADADVFRLTLDPGTTVTYVAELRTPNLPQLYLWEPEAYKDKVTSLTL 181 Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250 Y+GI+IG+A LLA+FLTI ++V + + A+AW VL Y+ IDFGF K+ + Sbjct: 182 YKGIVIGIAGLLALFLTIVFVVKGAVIFPAAAALAWAVLAYVVIDFGFWDKIFGSDANTD 241 Query: 251 LIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310 IWRA +E LS++L++FLF YL+ NRWH + ++ + +A L ++ + V A + Sbjct: 242 RIWRAGAETVLSATLVVFLFAYLNLNRWHVRAWHVAALWLLILADLIGLAMFDAPVAAGV 301 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 ARI+LA+I + ++Y G+ERA++LIP W L+ +W A+ + ND++ PA Sbjct: 302 ARISLATIAVVGFVLVLYLASHGFERAIMLIPTWFLLVVWVATAGFAVAGWMTNDLVSPA 361 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 LVGGLVLIV+LIGFTV+Q+ ATG S G SD ER++LA+ G+ +IV+DWD+ D + Sbjct: 362 LVGGLVLIVMLIGFTVMQNAFATGGLSHGAISDVERKALAMTGANEIVFDWDVPSDHIYV 421 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +P+ LGL G + G +WL +H ++D +R LD+ + RRGR+ EFR+RAAD Sbjct: 422 SPEAEAALGLDRGGLEGAASSWLDLLHPFEQDRYRACLDALLEQRRGRINQEFRLRAADG 481 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + +R RP+ +G+++R +G D+T+++ + E +L +A DNLTG+PNR+ F DR Sbjct: 482 HYLCYRLRARPVVGPDGEVIRVVGTLTDVTDERNAQERLLHDAVHDNLTGLPNRELFFDR 541 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L + D ++RPTV+VIDID++K+IN+ +GIA+GD +L+++ R+ LL+ D LA Sbjct: 542 LEAALVFARMDKDVRPTVLVIDIDRFKQINEQVGIAMGDSILLTVAHRLTRLLQPQDTLA 601 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KIT 669 RL+G+ F IIL+SE ++ + A ++R+S+A P+ +REI + ASIG A + Sbjct: 602 RLNGDAFAIILVSETHADHVITLADSVRRSLATPVRFTDREIALFASIGIALYDQQMHPG 661 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 + +ML++AE+AM HAK GGN +E FR + + RSDR+ ++ D+ A+E E+ + + PI Sbjct: 662 ADDMLEDAEIAMRHAKRSGGNRIEVFRPAMRAQRSDRLTLEADMRRALERGEVKVFFQPI 721 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 +RL D I G EAL++WDHP+ G + S+F+ IAE+ +I L LER AR++ +W+ Sbjct: 722 VRLEDRTIAGFEALLRWDHPRLGRLEPSQFIPIAEQTGLIIDFGLLALERTARELAAWQR 781 Query: 788 QAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 PPIF +N++S+ LL ++L +++++ + +KL +ES+VM NPE + Sbjct: 782 ALAVDPPIFASVNVSSRQLLRHDLLRDVKSVLMRHDIVKGSLKLELTESLVMENPEYAAQ 841 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPM 905 +L R++++G L+LDDFGT S L+YL PFDT+K + S + S + ILRSII + Sbjct: 842 MLARIKELGAGLSLDDFGTGYSSLAYLQRFPFDTIKIDRSFVKQSGKGARPVILRSIIAL 901 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+++ ++A+ E D EL ++GC Y Q P+ +L+ Sbjct: 902 AQDLGMDVVAEGAETESDAIELYQLGCGYAQGYAFGRPISSQEARRLV 949 >gi|307941653|ref|ZP_07657008.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4] gi|307775261|gb|EFO34467.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4] Length = 931 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 381/923 (41%), Positives = 593/923 (64%), Gaps = 6/923 (0%) Query: 38 SSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTS 97 L+LT +Y QV TA DGI RRIEV + W VFALANTS Sbjct: 2 PPDIDALELTDSVDLYREAVPRLQVSTAPGADGIVRRIEVPSRD-GSSRSWTVFALANTS 60 Query: 98 DSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGA 157 D Q++RL+V P +RLVGS F P+LGS RI+++TPS+G + R + ++DVF IT++PGA Sbjct: 61 DEQVDRLLVAPFFRLVGSKLFWPELGSSRIVAITPSQGLAPVREHSLEADVFLITLDPGA 120 Query: 158 VVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSM 217 +VTF+ E+++P+LPQ+ LW+P YK+T+N +TLYRGII+G++ LLA+FLTI ++V + M Sbjct: 121 IVTFVAELNSPDLPQLRLWKPEVYKETINGYTLYRGIILGISGLLALFLTILFVVKGTVM 180 Query: 218 LIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNR 277 T A+AW VL Y+ IDFGF S L L G ++RA +E+ L+SSLIIFL+ YL+ NR Sbjct: 181 FPATAALAWSVLAYLCIDFGFWSLLFKLEHGGEPLYRASAEVMLTSSLIIFLYAYLNLNR 240 Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 W+ ++ + + + L ++ + P V A IAR+ + I + I+ +GY+RA Sbjct: 241 WNIHYSHLALTSLVLLLGLLGVAVWDPSVAAGIARLAMGIIGILGFVTILVLAWQGYDRA 300 Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397 +LLIP+W L+ W IG M +T L NDI+QPAL GGLVLIV+LIGFTV+QH A G + Sbjct: 301 ILLIPSWFLLLAWLIGAAMTVTGTLANDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAIA 360 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 QG+ SD ER++LA+ G+GDI+WDWDI RDR+ T ++ +L L G++ GP R+WL +H Sbjct: 361 QGLISDVERRALALTGAGDIIWDWDIDRDRIFTGNEVEDLLNLRRGTLEGPARDWLDVLH 420 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DRD FR LD+ + R G++ FR+R+ D F W +R RP+ ++G+++R +G Sbjct: 421 PQDRDRFRATLDAVIDKRGGKIVQTFRLRSEDGHFRWFRLRARPIVGADGEVIRCVGTLL 480 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI-LDLSATDDNLRPTVMVIDIDKY 576 D+TE++ + E +L +A DNLTG+PNR+ F+DRL T + +A ++PTV+++++D++ Sbjct: 481 DVTEERTAEERLLHDAVHDNLTGLPNRELFMDRLRTAVIQTNAEQSGVKPTVIMLNLDRF 540 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND +GI+ GD +L+++ RR+G L+ D LARL+G+ +G++++SE ++ A + Sbjct: 541 KQVNDSIGISAGDSILLTVARRLGRLIGRQDTLARLNGDLYGLVVLSEKEPDRVVALADS 600 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 +RK++ PI EREI +T S G A + K +++ NAE+A+ HA+ GG+ E FR Sbjct: 601 LRKAVRSPITFGEREIFLTCSAGIALFEGGKQDVEDLMANAEIALNHARRLGGDRQEVFR 660 Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + V ++ DL A++ L + Y PI+RL ++ + G E L +W HPK G IS Sbjct: 661 PILRPLGKNVVDLEADLREAIKKENLGVFYQPIVRLENQSVAGFEVLARWKHPKRGQISP 720 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEG 813 SEF+ IAE+ +I + ++MLE+ A + W+ + P+F+ +N++S+ LL+++L Sbjct: 721 SEFIPIAEQSGLIHELGMYMLEKGAHQLAYWQREMKTSTPLFVSVNLSSRQLLNHDLIND 780 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++A++S++ +P +KL +ES+VM NPE S +L RLR +G L++DDFGT S LSYL Sbjct: 781 VKAVLSRSSVAPGTLKLELTESLVMSNPEYSVKVLERLRGLGAGLSIDDFGTGHSSLSYL 840 Query: 874 GYIPFDTVKFNGSLMTGSTEKRIAI-LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFDT+K + S + S + +I LR+I+ M ++ +I+A+ E + EL ++GC Sbjct: 841 QRFPFDTLKIDQSFVKPSADSSRSILLRTIVAMGHDLGMSIVAEGAESEDEALELYQLGC 900 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 +Y Q + + K L++ Sbjct: 901 EYAQGFFFGQAVSSDEATKTLRK 923 >gi|170740577|ref|YP_001769232.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] gi|168194851|gb|ACA16798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] Length = 959 Score = 881 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 380/933 (40%), Positives = 585/933 (62%), Gaps = 5/933 (0%) Query: 26 VSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHR 85 S + A+E + +S + +DLT Y + G+ Q+ TA DGI RRI V A R Sbjct: 20 PSAARALEAVRVSLDAQAIDLTPAIERYRSDGDLIQISTAPGKDGIVRRIAVKARETGAR 79 Query: 86 GDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSD 145 DW VFAL N +D Q++R++V PH+RLVGS PDLG RI ++T S+G +R + D Sbjct: 80 PDWIVFALTNDTDEQIDRILVAPHFRLVGSGIVWPDLGGSRIAAITASQGIRPERDESPD 139 Query: 146 SDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIF 205 +D F +T++PG VTF+ E+ TPN+PQIYLW+ + Y+ TLY+GIIIG+A LLA+F Sbjct: 140 ADQFTVTLDPGTTVTFVAELRTPNVPQIYLWDQDAYRKKATGLTLYKGIIIGIAGLLALF 199 Query: 206 LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL 265 LT+ ++V + + A+AW VL Y IDFGF ++ + I+RA +E L ++L Sbjct: 200 LTVVFVVKGAIIFPAAAALAWSVLAYTCIDFGFFQRIFPVTEAAERIYRASAEAVLGATL 259 Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYF 325 ++FLF YL+ RWH + ++ + +A L ++ P V A +ARI++A++ Sbjct: 260 LVFLFAYLNLARWHVRYSHVALLWLIFLAGLVALAVVDPPVAAGVARISIATVAGVGLLL 319 Query: 326 IIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384 ++Y GY+RA+LLIP W+L+ W + AIT +L ND++QPAL+GGLVLIV+LIGF Sbjct: 320 VLYLAAHNGYDRAILLIPTWLLLTAWVVAAGFAITGQLRNDLVQPALIGGLVLIVMLIGF 379 Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 TV+QH A G + SD ER++LA+ G+GD+V+DWD+ DRV P+I LGL G+ Sbjct: 380 TVLQHAFAGGGIGATLVSDTERRALALTGAGDVVFDWDVPGDRVFVGPEIEGQLGLKRGA 439 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + GP NWL +H D D + LD+ + RRGR+ +FR+RAA + W ++ RP+ Sbjct: 440 LEGPAANWLALLHPFDVDRYSAALDTVIEERRGRISQDFRLRAAAGPYFWFRLKARPVIG 499 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 ++G+++R +G D+TE K + E +L +A DNLTG+PNR+ F DRL L L+ D L Sbjct: 500 ADGEVIRIVGTIADVTELKIAEERLLHDAVHDNLTGLPNRELFHDRLDAALTLAGQDPRL 559 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 +PTV V+DID++K++ND +G++ GD +L++L+RR+G LL+ D LAR++G+ F IIL+SE Sbjct: 560 KPTVFVLDIDRFKQVNDAIGLSAGDSILLTLSRRLGRLLRPQDTLARIAGDEFAIILVSE 619 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT-SSEMLKNAELAMYH 683 + +I FA ++R++I PI +REI +T SIG A + ++ KNAE+AM Sbjct: 620 RDPDRIIAFAESIRRTITTPITYADREIFLTPSIGVALHETGANAKRDQVFKNAEIAMIQ 679 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +GG+ +E +R + R++++ DL A+E +E+ +++ PI+RL D + G EAL Sbjct: 680 AKRQGGDRIEVYRPTMRADRGDRMLLENDLRRALERNEIKVLFQPIVRLEDRTVAGFEAL 739 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINI 800 ++WDHPK G IS F+ IAEE +I + +F LER A ++ +W+ PP+F +N+ Sbjct: 740 LRWDHPKHGRISPQTFIPIAEESGLIVDLGVFALERTAAELAAWQQALVVEPPLFASVNV 799 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +S+ LL ++L ++ ++++T +P +KL +ES+VM NPE + +L R+ ++G L+L Sbjct: 800 SSRQLLRHDLLHDVKTVLARTGVAPGSLKLELTESLVMENPEYAAQMLARIAELGAGLSL 859 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 DDFGT S L+YL PFDT+K + S + R ILRSI+ MA+ + I+A+ Sbjct: 860 DDFGTGYSALAYLQRFPFDTLKIDQSFVRQMASGRTVILRSIVRMAQELGLEIVAEGAET 919 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 E D + L +GCDY Q P+ + +L+ Sbjct: 920 EADAQALAELGCDYAQGFAFGEPMSIHQARQLV 952 >gi|154246351|ref|YP_001417309.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Xanthobacter autotrophicus Py2] gi|154160436|gb|ABS67652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Xanthobacter autotrophicus Py2] Length = 980 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 388/954 (40%), Positives = 596/954 (62%), Gaps = 8/954 (0%) Query: 9 SHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI 68 L++ L + A+E I + +V+DL + + FQ+ TA D Sbjct: 12 PMALLVALVVAPLLTLPAGSARAMEAIALRLDAKVVDLLPAVQRETTEDGRFQISTAPDA 71 Query: 69 DGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRII 128 +G+ RRIEV S R GDW FAL N +D Q++RLIV PHYR+ GS F PDLG+RRI Sbjct: 72 EGVVRRIEVPTSDGRSHGDWIAFALTNNTDEQVDRLIVAPHYRMSGSGLFWPDLGNRRIT 131 Query: 129 SVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSF 188 S+TPS+GF +R D+DVF IT++PG+ VTF+ E+ +P LPQ+YLWEP+ YKD VN+F Sbjct: 132 SLTPSQGFKPERQTAPDADVFLITLDPGSTVTFVAELGSPTLPQLYLWEPDAYKDRVNAF 191 Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248 TLY GI+IG+A LLA+FLTI ++V S M A+AW VLGYI +DF F SK+ L Sbjct: 192 TLYHGIVIGIAGLLALFLTILFVVKGSVMFPAAAALAWAVLGYIGLDFAFWSKVFGLSPI 251 Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308 WRA E L+ +L++FLF YL+ NRWH + ++ + +A L ++ V A Sbjct: 252 AEQFWRAAGEAILTGTLLVFLFAYLNLNRWHVRYVHVAAGWLTFLAALVAVALLDAPVAA 311 Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368 IAR++L ++ + II+ GY+RAVL+IP W L+ +W + + + + ND+ Sbjct: 312 GIARLSLLAVAVAGLGVIIWLSQHGYDRAVLIIPTWSLLVVWVLMAGLTVAGFVTNDLAA 371 Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 PAL GGLVLIV+LIGFTV+QH A QG S+ ER++LA+ GSG IVWDWD+ DR+ Sbjct: 372 PALSGGLVLIVMLIGFTVMQHAFAGIGGIQGSTSELERRALALAGSGLIVWDWDVDTDRI 431 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 T+P+ LGL S+ WL +H DRD FR LD + RRGR+ +FR+RA Sbjct: 432 YTSPEAEEALGLKRHSLETEAAGWLEVLHPADRDRFRATLDGIIDQRRGRIDQDFRLRAI 491 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 D + ++ RP+ ++G+++R +G D+T ++ + E +L +A +DNLTG+PNR+ FL Sbjct: 492 DGHYLTFNLKARPVVGADGEVVRCVGTLMDVTGERIAAERLLHDAVRDNLTGLPNRELFL 551 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 DRL+ L ++ DD ++PTVMVID+D++K++N +G+AV D +L+++ RR+ LLK D Sbjct: 552 DRLSQALTMARLDDKVKPTVMVIDLDRFKQVNVQVGMAVADSILLTVARRLMRLLKPQDT 611 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 LAR+SG++FG+IL+SE ++ +I FA +R+S+ PI +RE+ VTASIG + Sbjct: 612 LARISGDQFGMILMSERDAERITTFADTLRRSLRAPIAFADREVFVTASIGLVLAGPDQS 671 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726 E+LK+AELAMY+AK GG+ +E FR + + ++ +L A+ +++ + Y P Sbjct: 672 KREEVLKDAELAMYYAKRIGGDRIEVFRPAMRQQKIDRVVLEGELREALARNQISVRYQP 731 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I+RL D I G EA ++W+HP+ G +++SEF+L+AEE +I + LF+L+ AR + W+ Sbjct: 732 IVRLGDRAIGGFEAYMRWNHPRLGELAASEFLLLAEETGLILDLGLFVLDAAARQLGQWQ 791 Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 PP+F+ +N++S+ LL ++L + +++++++ +P +KL +ES+VM NPE + Sbjct: 792 RTLRVDPPLFMHVNVSSRQLLRHDLIQDLKSVLARNAVAPGSLKLEVTESLVMENPEYAA 851 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-----RIAILR 900 ++LGR+R++G L LDDFGT S LSYL PFD+VK + + + + R I+ Sbjct: 852 VVLGRMRELGAGLCLDDFGTGYSALSYLQRFPFDSVKIDPRFVRDTAKGAARAARPVIVG 911 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 ++I +A ++ ++A+ + E + E+ R GC+Y Q PL L++ Sbjct: 912 AMIDLAHDLGMDVMAEGLEKETEAAEMARFGCEYGQGVVFGEPLTAEECRTLIE 965 >gi|218530265|ref|YP_002421081.1| diguanylate cyclase/phosphodiesterase [Methylobacterium chloromethanicum CM4] gi|218522568|gb|ACK83153.1| diguanylate cyclase/phosphodiesterase [Methylobacterium chloromethanicum CM4] Length = 1050 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 379/948 (39%), Positives = 593/948 (62%), Gaps = 13/948 (1%) Query: 19 VLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS 78 + L+ +P+ A+E + ++ +DLT Y + G+ Q+ TA DGI RRI V Sbjct: 96 LAGLIGTAAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQISTAPGKDGIVRRIAVK 155 Query: 79 ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSL 138 A R DW VFAL N +D Q++RL+V PH+RLVGS PDLG RI ++T SEG Sbjct: 156 AREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPDLGGSRIAAITASEGIRP 215 Query: 139 DRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGV 198 +R + D+D F ITI+PG VT++ E+ PN+PQ+YLW+ + Y+ + TLY+GIIIG+ Sbjct: 216 ERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAYRKKTSGLTLYKGIIIGI 275 Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258 A LLA+FLTI ++V + + A++W VL Y IDFGFL ++ + I+RA +E Sbjct: 276 AGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQRVFPVTELAERIYRASAE 335 Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI 318 L ++L++FLF YL+ +RWH + ++ F + +A L ++ + P V A +ARI++A++ Sbjct: 336 AVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAVFDPPVAAGVARISIAAV 395 Query: 319 VLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 I+Y + GY+RA+LL+P W+L+ +W + AIT ++ +D++QPAL+GGLVL Sbjct: 396 AGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITGQIGSDLVQPALIGGLVL 455 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 IV+LIGFTV+QH A G S + SD ER++LA+ G+GDIV+DWD+ DRV P+I Sbjct: 456 IVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIEAQ 515 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 LGL G++ GP NWL +H D + + LD+ + RRGR+ ++FR+R+AD + W + Sbjct: 516 LGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRITHDFRLRSADGPYAWYRL 575 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + RP+ ++G+++R +G +D+TE K + E +L +A D+LTG+PNR+ F DRL L + Sbjct: 576 KARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAALAM 635 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 ++ D L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+ D LAR++G+ F Sbjct: 636 ASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEF 695 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS---------SKI 668 +IL+SE +I FA +R++IA P+ +RE+ +T SIG A + + Sbjct: 696 AVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGIALHEATQGVGNQGSGQT 755 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHP 726 E+ KNAE+AM AK GG+ +E FR + RSDR+M++ DL A+E +E+ +++ P Sbjct: 756 RREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQP 815 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I+RL D + G E L++WDHPK G I S F+ +AEE +I + F +ER A ++ +W+ Sbjct: 816 IVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLGNFAIERTALELAAWQ 875 Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + PPIF +N++S+ LL ++L ++ +I++T P +KL +E +VM NPE + Sbjct: 876 RSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYAA 935 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905 +L R+ +G L LDDFGT S +SYL PFDT+K + S + + R A+LRS++ M Sbjct: 936 QMLTRIHDLGAGLVLDDFGTGYSAISYLQRFPFDTIKIDQSFVRQMGQGRTAMLRSVLRM 995 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + IA+ E D + L GCDY Q + P+ +L+ Sbjct: 996 GQELGLATIAEGAESEEDAQVLQEFGCDYAQGAAFGEPMTVLQARQLV 1043 >gi|158422113|ref|YP_001523405.1| diguanylate cyclase [Azorhizobium caulinodans ORS 571] gi|158329002|dbj|BAF86487.1| diguanylate cyclase [Azorhizobium caulinodans ORS 571] Length = 965 Score = 870 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 388/962 (40%), Positives = 596/962 (61%), Gaps = 8/962 (0%) Query: 9 SHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI 68 F L+L+ L +FA++ + + +V DL E Q+ TA Sbjct: 2 RSFLAFCLVLLGALSLAAPSAFAVDAVAVRLDAKVTDLLPAVERLHTDNERVQISTAPGT 61 Query: 69 DGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRII 128 DGI RRIEV +S + +W FAL+N +D Q++RLIV P YR+VGS F PDLG+RR++ Sbjct: 62 DGIVRRIEVRSSDGQPNANWVAFALSNNTDEQVDRLIVAPFYRMVGSGLFWPDLGNRRVL 121 Query: 129 SVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSF 188 S+TPS+GF +R D+DVF +T++PG VTF+ E++ P LPQ+YLW+P+ YKD VNSF Sbjct: 122 SLTPSQGFKPERQNAPDADVFLVTLDPGTTVTFVAELAGPKLPQLYLWQPDAYKDKVNSF 181 Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248 TLY GI+IG+A LLA+FLTI ++V S M A+AW VLGYI +DF F SK+ L Sbjct: 182 TLYHGIVIGIAGLLALFLTILFVVKGSVMFPAAAALAWAVLGYIGLDFSFWSKVFGLSPI 241 Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308 WRA E L+++L++FLF YL+ NRWH + ++ + +A L ++ V A Sbjct: 242 AEQFWRASGEAVLTATLLVFLFAYLNLNRWHVRYMHVAAGWLVFLAALVAVALLDAPVAA 301 Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368 IAR++LA + + +I+ GY+RAVL+I W+L+ +W + M +T + ND++ Sbjct: 302 GIARLSLAMVAVAGLLVVIWLSQHGYDRAVLIILTWMLLVVWVVMAGMTVTGVVTNDLVA 361 Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 PAL GGLVLIV+LIGFTV+QH A QG SD ER++LA+ GSG IVWDWD+ DR+ Sbjct: 362 PALSGGLVLIVMLIGFTVMQHAFAGVGAVQGSASDLERRALALAGSGYIVWDWDVDSDRI 421 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 +P+ LGL S+ WL +H DRD FR LD + RRGR+ +FR+RA Sbjct: 422 YVSPEAEEALGLKRHSLETEAAGWLEVLHPGDRDRFRATLDGIIEQRRGRIDQDFRLRAI 481 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 D + +R RP+ ++G+++R IG+ +D+T + + E +L +A +DNLTG+ NR+ FL Sbjct: 482 DGHYLTFNLRARPVVGADGEVVRCIGVLSDVTGDRIAAERLLHDAVRDNLTGLANRELFL 541 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 DRL L + TD+++RPTVM+IDID++K++N +G+AVGD +L+++ RR+ LLK D Sbjct: 542 DRLDQALAFAKTDESIRPTVMIIDIDRFKQVNVSVGMAVGDSILLTVARRLMRLLKPQDT 601 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 LAR+SG++FG+IL+SE + +I FA +R+S+ PI+ EREI +TASIG ++ Sbjct: 602 LARISGDQFGLILLSERDPERITTFADTLRRSLRAPISFAEREIFITASIGLVLSSADPG 661 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHP 726 ++LKNAELAM+ AK GG+ +E FR + + DR ++ DL A+E E+ + Y P Sbjct: 662 KREDVLKNAELAMFFAKRIGGDRIEVFRPAMRQQKIDRTSLESDLRRALERDEITVRYQP 721 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 ++RL D I G EA ++W HP G +++++F+ +AEE +I + LF+LER AR + W+ Sbjct: 722 VVRLHDRAIGGFEAFMRWKHPSLGELAAADFLHVAEESGVILELGLFVLERAARQLGQWQ 781 Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 PP+F+ +N++S+ LL ++L + +++++++ + P +KL +E++ M NPE S Sbjct: 782 RILKVDPPLFMTVNVSSRQLLRHDLIQDLKSVLARNVVEPGSLKLEVTEALAMENPEYSA 841 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILR 900 ++L R+R +G L +DDFG S L+YL +PFD +K + + + R I+ Sbjct: 842 VMLQRMRDLGAGLVMDDFGVGQSSLAYLPRLPFDAIKIDNRFIRNTVKGSVRAARPIIVG 901 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 S+I +A + ++++ + E + EL R+GC+Y Q + PL LL+ Sbjct: 902 SMIELAHQLGIEVMSEGLEREQEAAELGRLGCEYGQGTLFGEPLTAEECRALLEPSPAEA 961 Query: 961 KN 962 + Sbjct: 962 RR 963 >gi|114706691|ref|ZP_01439592.1| sensory box/GGDEF domain/EAL domain protein [Fulvimarina pelagi HTCC2506] gi|114538083|gb|EAU41206.1| sensory box/GGDEF domain/EAL domain protein [Fulvimarina pelagi HTCC2506] Length = 979 Score = 869 bits (2246), Expect = 0.0, Method: Composition-based stats. Identities = 403/937 (43%), Positives = 598/937 (63%), Gaps = 4/937 (0%) Query: 30 FAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWA 89 A++ + +S ++ V+DL +Y N G FQV +GI RRIE+ A++ + GDWA Sbjct: 43 HALDVVAVSPNESVIDLRPAIEVYRNAGRSFQVSAVPGPEGIVRRIEIDATTQQANGDWA 102 Query: 90 VFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVF 149 VFAL N SD Q++RLIV PH+ GS +PDLGS+RI ++TPS+GF+L+R +S++D F Sbjct: 103 VFALTNESDEQIDRLIVAPHFTPAGSGVLNPDLGSQRIAAITPSQGFALERQVSSEADEF 162 Query: 150 RITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIF 209 +T++PGA+VTF+ E++ LP + LWEP Y++ VN+FTLYRGI++G+A LLA+FLTI Sbjct: 163 LVTLDPGAIVTFVAELTAERLPDVRLWEPGTYRENVNAFTLYRGIVLGIAGLLAVFLTIL 222 Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269 ++V S+M A++W VL YI IDF F KL+ G+ +WRA E+A +LI+FL Sbjct: 223 FVVKGSAMFPAAAALSWSVLAYICIDFQFWEKLMPFAPGQEPLWRAGVEVAFLFTLILFL 282 Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329 F YL NRWH + ++ +A + + + P+ A I R++LA II Sbjct: 283 FAYLSLNRWHGYLTIVSGVVLAAVGAIGAYTLVDPVSAAGITRVSLAFTAALGLAAIISL 342 Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389 ++ ++RAV+L+P W+L+ +W WM +T R+ NDIIQPAL G LVLIV+LIGFTV+QH Sbjct: 343 SIQRFDRAVMLLPTWLLLIVWIWAAWMTVTGRISNDIIQPALGGSLVLIVLLIGFTVMQH 402 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 A G +QG+ SD ER+SLA+ GSGD V+DWD++RDR+ + A + L +M+GP Sbjct: 403 GFAGGTLAQGLVSDLERRSLALAGSGDAVFDWDVIRDRIFIDSESAMLSALPVDAMNGPA 462 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 RNWLP +H +DRD F+ LD+ + +RRGR+ +FRVR D +HW+ +R RPM ++G++ Sbjct: 463 RNWLPVLHPDDRDRFKLTLDTIIEHRRGRMHQDFRVRDGDGHYHWLALRARPMLGTDGEV 522 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 +R +G DIT KK+ + +L +A D LTG+PNR+ F+DRL I L+A + + PTV Sbjct: 523 MRCVGTLKDITSAKKAEDRLLQDAMVDQLTGLPNREVFMDRLEAINTLAAHSEGISPTVF 582 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 VIDID++K++ND G+A GD +L+++ RR+ LK D LARLSG++FG IL+SE +S Sbjct: 583 VIDIDRFKQVNDDYGLATGDTILLTIGRRLKRTLKPQDTLARLSGDQFGAILVSETSSDA 642 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +A FA MR++I PI ER+I +TASIG W+S T E L A+LAM+ AK GG Sbjct: 643 VASFAEHMREAIRAPIAFAERDIVLTASIGLTGWSSD-QTPPEALTEADLAMHQAKRMGG 701 Query: 690 NHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + +E FR + +RV ++ DL A E EL L + PI+ L DE I G EAL++WDHP Sbjct: 702 DRIEPFRPAYKAIGSNRVALETDLRRAFERHELALAFQPIVALEDETIAGFEALLRWDHP 761 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G IS +EF+ +AE +I + F LE A+ + W +F+ +N++S+ L+ Sbjct: 762 RRGKISPAEFVPLAERSGLIVQLGQFALEEAAKRLSDWHRATGDTKLFMSVNVSSRQLIT 821 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 +L + ++ + S +KL +ES+VM NPERS LL R+ + G+ L+LDDFGT Sbjct: 822 QDLIADVDTVLQRYRLPASALKLEMTESLVMDNPERSAQLLDRIVERGVGLSLDDFGTGY 881 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 S L+YL PFDT+K + S + ++ +R IL+SI+ MA ++ I+A+ + E D+ Sbjct: 882 SSLAYLMRFPFDTLKIDQSFLKHNSQPQRPVILKSIVTMAHDLGLKIVAEGVETEADVAT 941 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 L +M C+Y Q A PL ++L + P ++ T Sbjct: 942 LRQMKCEYAQSFLYAKPLNQEEARRMLVAKEPGLRRT 978 >gi|240138621|ref|YP_002963093.1| diguanylate cyclase (GGDEF domain)/phosphodiesterase (EAL domain) with PAS/PAC and GAF sensor domains [Methylobacterium extorquens AM1] gi|240008590|gb|ACS39816.1| diguanylate cyclase (GGDEF domain)/phosphodiesterase (EAL domain) with PAS/PAC and GAF sensor domains [Methylobacterium extorquens AM1] Length = 976 Score = 866 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 379/948 (39%), Positives = 593/948 (62%), Gaps = 13/948 (1%) Query: 19 VLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS 78 + L+ +P+ A+E + ++ +DLT Y + G+ Q+ TA DGI RRI V Sbjct: 22 LAGLIGTAAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQISTAPGKDGIVRRIAVK 81 Query: 79 ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSL 138 A R DW VFAL N +D Q++RL+V PH+RLVGS PDLG RI ++T SEG Sbjct: 82 AREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPDLGGSRIAAITASEGIRP 141 Query: 139 DRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGV 198 +R + D+D F ITI+PG VT++ E+ PN+PQ+YLW+ + Y+ + TLY+GIIIG+ Sbjct: 142 ERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAYRKKTSGLTLYKGIIIGI 201 Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258 A LLA+FLTI ++V + + A++W VL Y IDFGFL ++ + I+RA +E Sbjct: 202 AGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQRVFPVTELAERIYRASAE 261 Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI 318 L ++L++FLF YL+ +RWH + ++ F + +A L ++ + P V A +ARI++A++ Sbjct: 262 AVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAVFDPPVAAGVARISIAAV 321 Query: 319 VLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 I+Y + GY+RA+LL+P W+L+ +W + AIT ++ +D++QPAL+GGLVL Sbjct: 322 AGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITGQIGSDLVQPALIGGLVL 381 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 IV+LIGFTV+QH A G S + SD ER++LA+ G+GDIV+DWD+ DRV P+I Sbjct: 382 IVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIEAQ 441 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 LGL G++ GP NWL +H D + + LD+ + RRGR+ ++FR+R+AD + W + Sbjct: 442 LGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRITHDFRLRSADGPYAWYRL 501 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + RP+ ++G+++R +G +D+TE K + E +L +A D+LTG+PNR+ F DRL L + Sbjct: 502 KARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAALAM 561 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 ++ D L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+ D LAR++G+ F Sbjct: 562 ASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEF 621 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS---------SKI 668 +IL+SE +I FA +R++IA P+ +RE+ +T SIG A + + Sbjct: 622 AVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGIALHEATQGVGNQGSGQT 681 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHP 726 E+ KNAE+AM AK GG+ +E FR + RSDR+M++ DL A+E +E+ +++ P Sbjct: 682 RREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQP 741 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I+RL D + G E L++WDHPK G I S F+ +AEE +I + F +ER A ++ +W+ Sbjct: 742 IVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLGNFAIERTALELAAWQ 801 Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + PPIF +N++S+ LL ++L ++ +I++T P +KL +E +VM NPE + Sbjct: 802 RSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYAA 861 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905 +L R+ +G L LDDFGT S +SYL PFDT+K + S + + R A+LRS++ M Sbjct: 862 QMLTRIHDLGAGLVLDDFGTGYSAISYLQRFPFDTIKIDQSFVRQMGQGRTAMLRSVLRM 921 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + IA+ E D + L GCDY Q + P+ +L+ Sbjct: 922 GQELGLATIAEGAESEEDAQVLQEFGCDYAQGAAFGEPMTVLQARQLV 969 >gi|163851456|ref|YP_001639499.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163663061|gb|ABY30428.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 976 Score = 866 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 379/948 (39%), Positives = 593/948 (62%), Gaps = 13/948 (1%) Query: 19 VLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS 78 + L+ +P+ A+E + ++ +DLT Y + G+ Q+ TA DGI RRI V Sbjct: 22 LAGLIGTAAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQISTAPGKDGIVRRIAVK 81 Query: 79 ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSL 138 A R DW VFAL N +D Q++RL+V PH+RLVGS PDLG RI ++T SEG Sbjct: 82 AREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPDLGGSRIAAITASEGIRP 141 Query: 139 DRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGV 198 +R + D+D F ITI+PG VT++ E+ PN+PQ+YLW+ + Y+ + TLY+GIIIG+ Sbjct: 142 ERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAYRKKTSGLTLYKGIIIGI 201 Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258 A LLA+FLTI ++V + + A++W VL Y IDFGFL ++ + I+RA +E Sbjct: 202 AGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQRVFPVTELAERIYRASAE 261 Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI 318 L ++L++FLF YL+ +RWH + ++ F + +A L ++ + P V A +ARI++A++ Sbjct: 262 AVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAVFDPPVAAGVARISIAAV 321 Query: 319 VLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 I+Y + GY+RA+LL+P W+L+ +W + AIT ++ +D++QPAL+GGLVL Sbjct: 322 AGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITGQIGSDLVQPALIGGLVL 381 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 IV+LIGFTV+QH A G S + SD ER++LA+ G+GDIV+DWD+ DRV P+I Sbjct: 382 IVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIEAQ 441 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 LGL G++ GP NWL +H D + + LD+ + RRGR+ ++FR+R+AD + W + Sbjct: 442 LGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRITHDFRLRSADGPYAWYRL 501 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + RP+ ++G+++R +G +D+TE K + E +L +A D+LTG+PNR+ F DRL L + Sbjct: 502 KARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAALAM 561 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 ++ D L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+ D LAR++G+ F Sbjct: 562 ASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEF 621 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS---------SKI 668 +IL+SE +I FA +R++IA P+ +RE+ +T SIG A + + Sbjct: 622 AVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGIALHEATQGVGNQGSGQT 681 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHP 726 E+ KNAE+AM AK GG+ +E FR + RSDR+M++ DL A+E +E+ +++ P Sbjct: 682 RREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQP 741 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I+RL D + G E L++WDHPK G I S F+ +AEE +I + F +ER A ++ +W+ Sbjct: 742 IVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLGNFAIERTALELAAWQ 801 Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + PPIF +N++S+ LL ++L ++ +I++T P +KL +E +VM NPE + Sbjct: 802 RSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYAA 861 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905 +L R+ +G L LDDFGT S +SYL PFDT+K + S + + R A+LRS++ M Sbjct: 862 QMLTRIHDLGAGLVLDDFGTGYSAISYLQRFPFDTIKIDQSFVRQMGQGRTAMLRSVLRM 921 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + IA+ E D + L GCDY Q + P+ +L+ Sbjct: 922 GQELGLATIAEGAESEEDAQVLQEFGCDYAQGAAFGEPMTVLQARQLV 969 >gi|254561219|ref|YP_003068314.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254268497|emb|CAX24454.1| diguanylate cyclase (GGDEF domain) /phosphodiesterase (EAL domain) with PAS/PAC and GAF sensor domains [Methylobacterium extorquens DM4] Length = 976 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 379/948 (39%), Positives = 593/948 (62%), Gaps = 13/948 (1%) Query: 19 VLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS 78 + L+ +P+ A+E + ++ +DLT Y + G+ Q+ TA DGI RRI V Sbjct: 22 LAGLIGTAAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQISTAPGKDGIVRRIAVK 81 Query: 79 ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSL 138 A R DW VFAL N +D Q++RL+V PH+RLVGS PDLG RI ++T SEG Sbjct: 82 AREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPDLGGSRIAAITASEGIRP 141 Query: 139 DRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGV 198 +R + D+D F ITI+PG VT++ E+ PN+PQ+YLW+ + Y+ + TLY+GIIIG+ Sbjct: 142 ERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAYRKKTSGLTLYKGIIIGI 201 Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258 A LLA+FLTI ++V + + A++W VL Y IDFGFL ++ + I+RA +E Sbjct: 202 AGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQRVFPVTELAERIYRASAE 261 Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI 318 L ++L++FLF YL+ +RWH + ++ F + +A L ++ + P V A +ARI++A++ Sbjct: 262 AVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAVFDPPVAAGVARISIAAV 321 Query: 319 VLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 I+Y + GY+RA+LL+P W+L+ +W + AIT ++ +D++QPAL+GGLVL Sbjct: 322 AGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITGQIGSDLVQPALIGGLVL 381 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 IV+LIGFTV+QH A G S + SD ER++LA+ G+GDIV+DWD+ DRV P+I Sbjct: 382 IVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIEAQ 441 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 LGL G++ GP NWL +H D + + LD+ + RRGR+ ++FR+R+AD + W + Sbjct: 442 LGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRITHDFRLRSADGPYAWYRL 501 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + RP+ ++G+++R +G +D+TE K + E +L +A D+LTG+PNR+ F DRL L + Sbjct: 502 KARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAALAM 561 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 ++ D L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+ D LAR++G+ F Sbjct: 562 ASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEF 621 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS---------SKI 668 +IL+SE +I FA +R++IA P+ +RE+ +T SIG A + + Sbjct: 622 AVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGIALHEAAQGVGNQGSGQT 681 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHP 726 E+ KNAE+AM AK GG+ +E FR + RSDR+M++ DL A+E +E+ +++ P Sbjct: 682 RREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQP 741 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I+RL D + G E L++WDHPK G I S F+ +AEE +I + F +ER A ++ +W+ Sbjct: 742 IVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLGNFAIERTALELAAWQ 801 Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + PPIF +N++S+ LL ++L ++ +I++T P +KL +E +VM NPE + Sbjct: 802 RSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYAA 861 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905 +L R+ +G L LDDFGT S +SYL PFDT+K + S + + R A+LRS++ M Sbjct: 862 QMLTRIHDLGAGLVLDDFGTGYSAISYLQRFPFDTIKIDQSFVRQMGQGRTAMLRSVLRM 921 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + IA+ E D + L GCDY Q + P+ +L+ Sbjct: 922 GQELGLATIAEGAESEEDAQVLQEFGCDYAQGAAFGEPMTVLQARQLV 969 >gi|296445908|ref|ZP_06887859.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Methylosinus trichosporium OB3b] gi|296256576|gb|EFH03652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Methylosinus trichosporium OB3b] Length = 956 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 376/944 (39%), Positives = 591/944 (62%), Gaps = 5/944 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 +LI +LF+++ S + AI+ + + +DLT Y +QG+ QV TA DGI RR Sbjct: 6 YLIALLFVVFWASRALAIDSVRVPQDAAAIDLTHAVETYSSQGDRLQVSTAPGSDGIIRR 65 Query: 75 IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134 IEV A R W VFAL N +D QLERLIV PH+RL GS PDLG+ R+ +VT S+ Sbjct: 66 IEVGAKEPGTRPSWIVFALTNDTDEQLERLIVAPHFRLQGSGVVWPDLGAIRLSAVTASQ 125 Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGI 194 GF+ +R ++D+DVFR+TI+PGA +T++ E+ TPNLPQ+YLWEP+ YKD V S TLY+GI Sbjct: 126 GFAPEREDSADADVFRLTIDPGATITYVAELRTPNLPQLYLWEPDAYKDKVTSLTLYKGI 185 Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254 +IG+A LLA+FLTI ++V + + A+AW VL Y+ IDFGF +K+ IWR Sbjct: 186 VIGIAGLLALFLTIVFVVKGAVIFPAAAALAWTVLAYVCIDFGFWAKIFGADPNADRIWR 245 Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314 A +E LS++L++FLF YL+ NRWH + ++ + +A L ++ + V A +ARI+ Sbjct: 246 AGAETVLSATLVVFLFAYLNLNRWHVRAWHVAALWLLILADLVGLAVFDAPVAAGVARIS 305 Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374 LA++ + ++Y G++RA++LIP W L+ +W + L ND++ PALVGG Sbjct: 306 LATVAVVGFVLVLYLATHGFDRAIMLIPTWFLLLLWVCAAGFTVGGWLTNDLVSPALVGG 365 Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 LVLIV+LIGFTV+Q+ A+G G S+ ER++LA+ G+ +IV+DWD+ D + +P++ Sbjct: 366 LVLIVMLIGFTVMQNAFASGGLGHGAISEVERKALALTGANEIVFDWDVPADYIYVSPEV 425 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 LGL G + G +WL +H + D +R LD+ + RRGR+ EFR+R AD + Sbjct: 426 EEQLGLDRGGLEGAASSWLALLHPFEHDRYRACLDAILEQRRGRINQEFRLRGADGHYMC 485 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 +R RP+ +G+++R +G D+T+ + + E +L +A DNLTG+PNR+ F DRL Sbjct: 486 YRLRARPVIGQDGEVIRVVGALTDVTDMRNAQERLLHDAVHDNLTGLPNRELFCDRLAAA 545 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L + D +RPTV+ ID+D++++ N+ +G+A GD VL+++ R+ LL+ D LARL G Sbjct: 546 LVFAGLDSGVRPTVLSIDVDRFRQTNEQVGMATGDSVLLTVAHRLTRLLQKQDTLARLGG 605 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEM 673 +RF IIL+SE + + A A+R+++A P+ +REI ++ SIG A + ++M Sbjct: 606 DRFAIILVSETHVDHVIALADAVRRALATPVRFTDREIALSVSIGVALFDKELHPDHNDM 665 Query: 674 LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 L++AE+A+ HAK GGN +E FR + S RSDR+ ++ +L A+E E+ + + P++RL Sbjct: 666 LEDAEIALRHAKRNGGNRIEVFRPAMRSQRSDRLTLEAELRRALERGEVKVFFQPVVRLE 725 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN- 790 D I G EA+++WDHP+ G + EF +AE+ ++ L LER AR++ +W+ Sbjct: 726 DRTIAGFEAVLRWDHPRLGQLDPREFGQVAEQTGLVVDFGLLALERTARELAAWQRALAV 785 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 PPIF + +AS+ LL ++L +++++ + + +KL +ES+VM NPE + +L R Sbjct: 786 DPPIFATVEVASRQLLRHDLLRDVKSVLMRNDIARGSLKLGLTESLVMENPEYTVEMLAR 845 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNI 909 ++++G L+L+DFG+ S L+YL PFD +K + + + + A ILRS+I +A ++ Sbjct: 846 IKELGAGLSLEDFGSGYSSLAYLQRFPFDAIKIDRNFVRQTGRASRAVILRSLIALANDL 905 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ E D EL ++GC Y Q P+ +L+ Sbjct: 906 GMDVIAEGAETESDAIELYQLGCAYAQGYAFGRPITPMEARRLV 949 >gi|188581246|ref|YP_001924691.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] gi|179344744|gb|ACB80156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] Length = 970 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 382/963 (39%), Positives = 599/963 (62%), Gaps = 16/963 (1%) Query: 7 LRSHFEKAFLI-----LVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQ 61 +R+ ++ + LL +P+ A+E + ++ +DLT Y + G+ Q Sbjct: 1 MRTLSLVLAILTAVAGALAGLLGTTAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQ 60 Query: 62 VFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPD 121 + TA DGI RRI V A R DW VFAL N +D Q++RL+V PH+RLVGS PD Sbjct: 61 ISTAPGKDGIVRRIAVKAREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPD 120 Query: 122 LGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFY 181 LG RI ++T SEG +R + D+D F ITI+PG VT++ E+ PN+PQ+YLW+ + Y Sbjct: 121 LGGSRIAAITASEGIRPERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAY 180 Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241 + + TLY+GIIIG+A LLA+FLTI ++V + + A++W VL Y IDFGFL + Sbjct: 181 RKKTSGLTLYKGIIIGIAGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQR 240 Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301 + + I+RA +E L ++L++FLF YL+ +RWH + ++ F + +A L ++ Sbjct: 241 VFPVTELAERIYRASAEAVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAV 300 Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITK 360 + P V A +ARI++A++ I+Y + GY+RA+LL+P W+L+ +W + AIT Sbjct: 301 FDPPVAAGVARISIAAVAGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITG 360 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 ++ +D++QPAL+GGLVLIV+LIGFTV+QH A G S + SD ER++LA+ G+GDIV+D Sbjct: 361 QIGSDLVQPALIGGLVLIVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFD 420 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 WD+ DRV P+I LGL G++ GP NWL +H D + + LD+ + RRGR+ Sbjct: 421 WDVPGDRVFAGPEIEAQLGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRII 480 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 ++FR+R+AD + W ++ RP+ ++G+++R +G +D+TE K + E +L +A D+LTG Sbjct: 481 HDFRLRSADGPYAWYRLKARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTG 540 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR+ F DRL L L++ D L+P V+ +DID++K IND +G++ GD +L++L+RR+G Sbjct: 541 LPNRELFHDRLEAALALASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLG 600 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 LL+ D LAR++G+ F +IL+SE +I FA +R++IA P+ +RE+ +T SIG Sbjct: 601 RLLRPQDTLARVAGDEFAVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGI 660 Query: 661 AS---WTSSKITS----SEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDL 711 A + + E+ KNAE+AM AK GG+ +E FR + RSDR+M++ DL Sbjct: 661 ALHEAAPGAGQGAQPRREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADL 720 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+E +E+ +++ PI+RL D + G E L++WDHPK G I S F+ +AEE +I + Sbjct: 721 RKALERNEIKVLFQPIVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLG 780 Query: 772 LFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 F +ER A ++ +W+ + PPIF +N++S+ LL ++L ++ +I++T P +KL Sbjct: 781 NFAIERTALELAAWQRSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKL 840 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +E +VM NPE + +L R+ +G L LDDFGT S +SYL PFDT+K + S + Sbjct: 841 EMAEGLVMENPEYAAQMLTRIHDLGAGLILDDFGTGYSAISYLQRFPFDTIKIDQSFVRQ 900 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + R A+LRS++ M + + IA+ E D + L +GCDY Q + P+ Sbjct: 901 LGQGRTAMLRSVLRMGQELGLATIAEGAESEEDAQGLQELGCDYAQGAAFGEPMTVLQAR 960 Query: 951 KLL 953 +L+ Sbjct: 961 QLV 963 >gi|300024403|ref|YP_003757014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Hyphomicrobium denitrificans ATCC 51888] gi|299526224|gb|ADJ24693.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) [Hyphomicrobium denitrificans ATCC 51888] Length = 1240 Score = 843 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 319/954 (33%), Positives = 543/954 (56%), Gaps = 8/954 (0%) Query: 14 AFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISR 73 + +L++L + + A+ PI I +++T++ Y +G+ QV T+A DG+S Sbjct: 18 VLAVAILWMLGLAGHAAALTPIPIQDDQDRVEITNLGEAYEGRGDSLQVETSAGQDGVSG 77 Query: 74 RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 R+ V AS +W VFAL N +D LERL+ Y +VGS PDL +RRI SVTPS Sbjct: 78 RMTVRASVPGTSPNWMVFALTNKTDKSLERLLAADRYSIVGSGTVWPDLDARRIESVTPS 137 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 GF +RI + +DVFRIT+ PG +T++ E++ + ++YLW+P Y+ L+ G Sbjct: 138 VGFVPERIKSDKADVFRITLEPGQTITYVAELAGEHFSRLYLWKPIDYEIKSRDRQLFNG 197 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 ++G+ LLAIFLT + N + ++W VL Y+ +DFGF KL NL + ++ Sbjct: 198 AMLGLTGLLAIFLTAIFAANHKLIFPAAALVSWTVLSYLCVDFGFFHKLFNLRPEDNAVY 257 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA E A++SS +IFL +L WH V + + L ++ P + A+ AR+ Sbjct: 258 RAAGEAAMASSFVIFLSTFLRLGLWHGMVRMMIGVWMVAQLTLIAVAVIDPRLAATFARL 317 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 + I F ++ KG +RA+ L+P W+L+ +W M ++ R+ D++ +L+ Sbjct: 318 SFLMIGGVGGLFTLFLAFKGQDRALSLVPTWLLLLVWIFATGMTLSGRMSGDVVVSSLIA 377 Query: 374 GLVLIVILIGFTVIQHVLATGYFS-QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 GLVL+VIL+GFTV Q+ + + G ++ + +SLA+ SG VW+W+I RD + +P Sbjct: 378 GLVLVVILMGFTVTQYAFRSSDAAYAGAPTELQGRSLALAASGSTVWEWNIRRDEIKVSP 437 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 ++ L L G + + ++L ++H D++ FR ++ S R++ +FR+R +DN + Sbjct: 438 EVEIALSLMPGELSTKVEDFLRHVHPTDKERFRVMMMSAQERSGVRIRTDFRLRHSDNSW 497 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 W + + NS+G LR +G+ D+++ K++ E +L +A +LTG+PNR+ FLDRL Sbjct: 498 RWFELEAASVPNSDGRTLRCVGLLRDVSDMKRAHERLLHDAVNCSLTGLPNRELFLDRLK 557 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 ++ + TD +RP V+ ID+DK+K IN G+ GD +L+++ RR+ L D +AR+ Sbjct: 558 GVVSRAKTDGGVRPAVIFIDLDKFKSINSSFGLVRGDSLLLTVARRLQRHLGPHDTVARV 617 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G++F ++ + E + + A +R+S+ PI L +E+ +T SIG A+W ++ + Sbjct: 618 GGDQFAMLFVGEREARNLPALAERVRRSLRAPIPLANQEVILTGSIGVAAWDENQSADGD 677 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 +LK+AELAMY AK G + +E F S R I +L A+E +L +VY PI+ L Sbjct: 678 LLKDAELAMYRAKRAGADRIEVFDASMRRDRDSNIGAELAKAIEKGQLKVVYQPIVYLPT 737 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +E+ G EA +W+HPK G ++ + + A E + ++ ++L R A+D W + P Sbjct: 738 KELAGFEAFARWEHPKLGLVNPASVIDEANEPDAMVKVSAYLLLRAAKDASRWLAELPRP 797 Query: 793 --PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 P+F+ +NI+S + E + ++ ++ + + P ++L +E+++MGNPE++ +L Sbjct: 798 ERPLFVTVNISSPHIFKPESIQEIRHILGRNIVPPGTLRLEIAENLMMGNPEQAIEVLKV 857 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNI 909 LR G L+LD+FGT S L+YL PFDT+K L+ GS T AI+RS++ +A + Sbjct: 858 LRGSGAELSLDEFGTGYSSLAYLNRFPFDTIKVCRGLVRGSGTANGAAIMRSMVALAHEL 917 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 T++A+ + + L +GC+Y Q H P+ ++ +LLK +V+ + Sbjct: 918 SKTVVAEGVERADEATFLRSIGCEYAQGYHFGEPIPERAVAQLLK----MVRRS 967 >gi|304393515|ref|ZP_07375443.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Ahrensia sp. R2A130] gi|303294522|gb|EFL88894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Ahrensia sp. R2A130] Length = 949 Score = 841 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 381/945 (40%), Positives = 601/945 (63%), Gaps = 4/945 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F++ VL + + A++P++++S +DL T + G V TA D G+ R Sbjct: 4 FILAVLLTCLATTSARALDPVDVTSQATAIDLKGTTDFHPAAGARLAVQTAPDAGGVINR 63 Query: 75 IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134 IEV ++ GDW FALAN SD Q++RLIV PHYRL GS F PDLG +RI+S+TPS+ Sbjct: 64 IEVRSTGNEGSGDWLSFALANKSDRQIDRLIVAPHYRLPGSGFMWPDLGRQRIVSITPSQ 123 Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGI 194 GF+LDR + +D+FR+T++PGAVVTF+ E+ + ++P + LWEP+ YKD VNSFTLY GI Sbjct: 124 GFALDRQLDGGADIFRVTLDPGAVVTFVAELGSADVPSLTLWEPDAYKDAVNSFTLYEGI 183 Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254 ++G++ LLA+FLTI ++V S+M T A+AW VL YI +DFGF+SK+V+L G+L WR Sbjct: 184 VLGISGLLAVFLTILFVVKGSAMFPATAALAWAVLAYICVDFGFISKIVDLAPGDLNRWR 243 Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314 A +E+AL+++L+IF + YLH RW+++ ++ IA + LF + + P + IAR+ Sbjct: 244 AGTEVALAATLLIFPYAYLHLGRWNSRWNWLMLGWIAAMGALFAAAIFMPERASGIARMA 303 Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374 A V II + Y+RA+L++P W+L W +G W I+ +LDNDIIQPAL GG Sbjct: 304 FAGAVGVTLLLIIILCFQRYDRAILIVPTWLLTIAWTVGGWWTISGQLDNDIIQPALGGG 363 Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 LVL+V+L+ FTV+QH A G +Q + SD ERQ+LA+ GSGD V+DWD+ RDR+ P++ Sbjct: 364 LVLLVLLLAFTVMQHAFAGGAIAQNLVSDVERQALALTGSGDAVFDWDVDRDRIHAGPEV 423 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 AT LGL G++ G +WLP++H DR FR+ LD + +R+GRL+ + R+R D + W Sbjct: 424 ATALGLKQGALDGAPADWLPHLHPEDRSPFRSALDVILDHRKGRLKLDIRLRGDDAHYTW 483 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 +R RP+ ++G++LR +G ++T+Q+ + E +L +A DNLTG+PN+Q FLDR+ + Sbjct: 484 YALRARPVIGNDGEVLRCVGSLTNVTDQRVAQERLLHDAVHDNLTGLPNKQIFLDRIESA 543 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + ++ +LRP++ +ID D++ ++N G+A GD VL+++ RRI +L+ D LARLS Sbjct: 544 IAIAQQTSDLRPSLFIIDFDRFAQLNKDAGVAAGDAVLLTMARRIRRILRPQDCLARLSN 603 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++FG++L+S+ K+ A A++++I PI+ E I+VTAS+G SW++ + T + Sbjct: 604 DQFGLLLLSQGEPEKVVVLADALQRAIRAPISFAEEGISVTASVGLVSWSNDRSTVEPLY 663 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+AE AM AK GG+ +E FR + DL A++ ++L +VY PI+ L Sbjct: 664 KDAETAMLQAKRLGGDRIEPFRPAFRHGQAPVGDFNHDLRSALDLNQLEMVYQPIVDLKT 723 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 ++VG EAL++W HP+ G + SEF+ AE+ +I + F LE+ A ++ Sbjct: 724 RQLVGFEALMRWQHPERGAVMPSEFIPAAEKSGLIVRLGQFALEQAATELARMIA-TGDE 782 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 +F+ +N++S+ LL ++L ++ ++++ ++L +ES++M NPE + +L R+R Sbjct: 783 NLFVSVNVSSRQLLRHDLINDVKTILARHSLPRDALRLELTESLIMDNPEHATRVLARVR 842 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIET 911 G L LDDFGT S LS+L PFDT+K + + + + +R IL+SI+ MA ++ Sbjct: 843 DAGAGLALDDFGTGFSSLSHLMRFPFDTIKIDRAFLDKQAGPERPIILKSIVTMAHDLGM 902 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +IA+ E D EL +MGC++ Q H + + ++LL + Sbjct: 903 QVIAEGAESERDALELEQMGCEFAQGFHFGPGVSADDAMQLLTRK 947 >gi|170748008|ref|YP_001754268.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170654530|gb|ACB23585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 976 Score = 839 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 369/929 (39%), Positives = 582/929 (62%), Gaps = 5/929 (0%) Query: 30 FAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWA 89 A+E + ++ V+DLT+ Y + G+ Q+ TA DGI RRI V A R DW Sbjct: 41 RAVEAVRVTLDAPVIDLTTAIERYRSDGDLIQISTAPGKDGIVRRIVVKARDAGARPDWI 100 Query: 90 VFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVF 149 VFAL N +D Q++R++V PH+RLV S PDLG RI ++T S+G +R N ++D F Sbjct: 101 VFALTNDTDEQIDRILVAPHFRLVDSGVIWPDLGGSRIAAITASQGIRPERDENPEADQF 160 Query: 150 RITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIF 209 IT++PGA VT++ E+ N+PQ+ LW+ + Y+ TLY+GIIIG++ LLA+FLTI Sbjct: 161 TITLDPGATVTYVAELRGSNVPQLRLWDQDAYRRKTAGLTLYKGIIIGISGLLALFLTIV 220 Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269 ++V + + A+AW VL Y IDFGFL ++ + ++RA +E L ++L++FL Sbjct: 221 FVVKGAIIFPAAAALAWSVLAYACIDFGFLQRVFPVTELAERVYRASAEAVLGATLLVFL 280 Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329 F YL+ RWH + ++ F +A +A L ++ + P V A +ARI++A++ I+Y Sbjct: 281 FAYLNLARWHVRYSHVAFFWLAFLAGLVGLAVFDPPVAAGVARISIAAVAGIGLLLIVYL 340 Query: 330 GMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 GY+RA+LL+P W+L+ +W A+T ++ +D++QPAL+GGLVLIV+LIGFTV+Q Sbjct: 341 AAHNGYDRAILLVPTWLLLVVWVTAAGFAVTGQIGSDLVQPALIGGLVLIVMLIGFTVLQ 400 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 H A G S + SD ER++LA+ G+GD+V+DWD+ DRV P+I LGLA G++ GP Sbjct: 401 HAFAGGGLSHALVSDTERRALALTGAGDVVFDWDVPADRVFVGPEIEGQLGLARGTLEGP 460 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 NWL +H D + + LD+ + RRGR+ ++FR+R+ F W ++ RP+ ++G+ Sbjct: 461 ATNWLGALHPFDVERYSAALDTVIEERRGRIVHDFRLRSEAGTFFWYRLKARPVIGADGE 520 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 ++R +G D+TE K + E +L +A D+LTG+PNR+ F DRL L + D L+PTV Sbjct: 521 VIRVVGTIADVTEIKTAEERLLHDAVHDSLTGLPNRELFGDRLDAALAFAGQDQRLKPTV 580 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +V+D+D++K IND +G++ GD +L++L+RR+G LL+ D LAR++G+ F +IL+SE + Sbjct: 581 IVLDVDRFKGINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEFAVILLSERDPD 640 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHR 687 +I FA +R++IA PI +REI +T SIG A + + E+ K+AE+AM AK Sbjct: 641 RILAFAEMIRRAIATPITYADREIFLTVSIGLALYEAGANLKRDEVFKSAEIAMIQAKRN 700 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG+ +E F + + RSDR+M++ DL A+E +E+ +++ P++RL D + G E +++WD Sbjct: 701 GGDRIEVFRAHMRTDRSDRLMLESDLRKAIERNEMRVLFLPVVRLEDRTVAGFETVLRWD 760 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKD 804 HPK G I +S F+ +AEE + + +F LER A ++ +W+ PPIF N++S+ Sbjct: 761 HPKLGRIPASTFLPLAEESGFVVNLGIFALERTALELAAWQRSLEVEPPIFAACNLSSRQ 820 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 LL ++L ++ +++++ P +KL FSES+VM NPE + +L R+ +G L L DFG Sbjct: 821 LLRHDLLHDVKTVLARSGALPGSLKLEFSESLVMENPEYAAQMLARIHDLGAGLCLSDFG 880 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 T S LSYL PFDT+K + + + + AILRSI+ MA + I+A+ E D Sbjct: 881 TGYSALSYLQRFPFDTIKVDATFVRQIGTGQTAILRSIVRMASELNLAIVAEGCESEADA 940 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L +GC+Y P+ +++ Sbjct: 941 QALAGLGCEYALGPAFGEPMTMLQARQIV 969 >gi|49475243|ref|YP_033284.1| hypothetical protein BH04460 [Bartonella henselae str. Houston-1] gi|49238048|emb|CAF27255.1| hypothetical protein BH04460 [Bartonella henselae str. Houston-1] Length = 961 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 388/955 (40%), Positives = 595/955 (62%), Gaps = 3/955 (0%) Query: 6 SLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTA 65 SLR F+I++ + + S AIEP+ ISS D LDL+ I+ FQ T Sbjct: 3 SLRKIINIIFVIVLSSFVHLTSV-QAIEPVKISSQDAALDLSRAIEIHHTDNSIFQTSTV 61 Query: 66 ADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125 DGI RIEV A + + G+WAVF+LAN +D Q++RLIV PHYR+ S F PDLGS Sbjct: 62 PGPDGIVWRIEVQAKNEKFSGNWAVFSLANPTDEQIDRLIVAPHYRMAHSGFLWPDLGSA 121 Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTV 185 RI S+TPSEGFSLDR +++ D+FRIT+NPGA+VTF+ E+++ NLPQIYLW+P YKD + Sbjct: 122 RIQSITPSEGFSLDRQSSANFDIFRITLNPGAIVTFVAELNSANLPQIYLWKPEAYKDAI 181 Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245 NS+TLY GI++G++ LA+ LT+ ++V + + T A+AW VL YI IDF FL+K + Sbjct: 182 NSYTLYHGILLGISGFLALLLTVLFVVRGTVLFPATAAIAWAVLFYIGIDFNFLNKFFAV 241 Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305 IWRA +E+AL+++L IFLF YL NRWH Y + L + Y P Sbjct: 242 TLTTQPIWRAGTEVALAATLFIFLFTYLCLNRWHYHFSYGAIVWTITLCGLGAFAVYDPT 301 Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365 A IAR++ + I Y ++ Y+RA++LIP W+LI W +G + I L+ND Sbjct: 302 RAAGIARLSFGLTAVLGIILISYFSIRNYDRAIMLIPTWLLISCWCLGAYACIAGYLNND 361 Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 IIQPAL GGLVLIV+LI FTV+Q + F +GIFSD E+Q LA G+G+I+WDW++ R Sbjct: 362 IIQPALSGGLVLIVLLISFTVMQQTFSNDAFHEGIFSDLEQQVLAAKGAGNIIWDWNVER 421 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 DR+ PD+ ++ G + ++GP++NW+ +H +DR+ F+ +LD + ++GR+ FR+ Sbjct: 422 DRIIVHPDMKSLFGTETHKLNGPMQNWISALHHDDRERFQAVLDIILKNKKGRIDQIFRL 481 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 + +HW +R RP +G I R IG +IT KK+ E +L +A D+LTG+PN+Q Sbjct: 482 SSGGGYYHWFSLRARPAMQKDGKITRVIGTIVNITNHKKAEERLLYDAIHDSLTGLPNQQ 541 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F DRL L+ + +RPTV +ID D +++IN LGIAVGD VL+ + RR+ L+ F Sbjct: 542 IFFDRLQNYTSLAKANIKIRPTVFMIDFDNFRQINHKLGIAVGDTVLLIIARRLSRLINF 601 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D L+RLS +RF IIL+SE KIA FA + K+I+ PI L E++I ++ SIG +W+ Sbjct: 602 QDTLSRLSADRFAIILLSETEPQKIAAFADRLHKTISAPIALTEKKIMLSPSIGLVTWSE 661 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723 ++ T+ ++L ++ELAM AK GGNH+E FR + + + +D+ A++ +E+ ++ Sbjct: 662 NRSTAKDILNDSELAMIRAKQMGGNHIEPFRPNFRTLGLEHNTMGQDVHYAIKRNEIKIL 721 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 YHPI+ L D I+G E +++W HP +GN++ S+F+ I E ++ + F+++ D+I Sbjct: 722 YHPILNLSDGHIIGFETIVEWHHPNYGNLNISDFIQILENEQIVMDLAEFIIDNAVIDLI 781 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 + +++ FI IN+ S +++ +++ + + + + + SE V+ NPE+ Sbjct: 782 NVQEKFFQQSFFISINLPSPEMVHPRFISQLRSTLLRHPLNKGGLMIEISEFVLRKNPEQ 841 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903 S L +++ +G++L LD+FGT S L+YL PFD VK + SL++ + K+ IL+SII Sbjct: 842 SAHFLEQIKALGLNLALDNFGTGYSSLAYLVRYPFDMVKLDRSLISIDSPKKKLILKSII 901 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 MA ++ IIA+ + E + L + GC Y+Q + V P+ ++ L++ FP Sbjct: 902 NMAIDLNLQIIAEGVENEKEAISLRQEGCKYVQSTLVTKPIAIEELITLVQNHFP 956 >gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040145|gb|ACT56941.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 818 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 963/963 (100%), Positives = 963/963 (100%) Query: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF Sbjct: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60 Query: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP Sbjct: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF Sbjct: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180 Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS Sbjct: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS Sbjct: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK Sbjct: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD Sbjct: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ Sbjct: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG Sbjct: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG Sbjct: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF Sbjct: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL Sbjct: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR Sbjct: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN Sbjct: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR Sbjct: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV Sbjct: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 Query: 961 KNT 963 KNT Sbjct: 961 KNT 963 >gi|49474006|ref|YP_032048.1| hypothetical protein BQ03650 [Bartonella quintana str. Toulouse] gi|49239509|emb|CAF25865.1| hypothetical protein BQ03650 [Bartonella quintana str. Toulouse] Length = 961 Score = 814 bits (2103), Expect = 0.0, Method: Composition-based stats. Identities = 394/955 (41%), Positives = 599/955 (62%), Gaps = 3/955 (0%) Query: 6 SLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTA 65 SLR F+++V F + + S AIEP+ ISS D LDL+ IY FQ T Sbjct: 3 SLRKIINITFVVIVSFFVHLTSV-QAIEPVKISSQDAALDLSKAIEIYHTNNSIFQTSTV 61 Query: 66 ADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125 DGI RIEV A S G+WAVF+LAN ++ Q++RLIV PHYR+ S F PDLGS Sbjct: 62 PGPDGIVWRIEVQAKSENFSGNWAVFSLANPTNEQIDRLIVAPHYRMAYSGFLRPDLGSA 121 Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTV 185 RI S+TPSEGFSLDR + +SD+FRIT+NPGAV+TF+ E+++ NLPQIYLW+P YKD + Sbjct: 122 RIQSITPSEGFSLDRQSSVNSDIFRITLNPGAVITFVAELNSANLPQIYLWQPEAYKDAI 181 Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245 NS+TLY GI++G++ LLA+ LT+ +++ + + T A+AW VL YI IDF FL+K + Sbjct: 182 NSYTLYHGILLGISGLLALLLTVLFVIRGTGLFPATAAVAWAVLFYIGIDFNFLNKFFAV 241 Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305 IWRA +E+AL+++ IFLF YL NRWH + Y + + L + Y P Sbjct: 242 TLTTQPIWRAGTEVALAATFFIFLFTYLCLNRWHYRFSYGAIAWTIALCGLGAFAIYDPT 301 Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365 A IAR++ V+ I Y ++ Y+RA++LIP W+LI W G + I L+ND Sbjct: 302 RVAGIARLSFGLTVVLGIVLISYFSIRSYDRAIMLIPTWLLISFWCFGAYACIAGYLNND 361 Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 IIQPAL GGLVLIV+LI FTV+Q + F +GIFSD E+Q LA G+G+I+WDW++ R Sbjct: 362 IIQPALAGGLVLIVLLISFTVMQQTFSNDAFHEGIFSDLEQQVLAAKGAGNIIWDWNVER 421 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 DR+ PD+ T+ G + ++G +RNW+ +H +DR+ F+ +LD + ++GR+ FR+ Sbjct: 422 DRIVVHPDMKTLFGTETKKLNGTMRNWISALHYDDRERFQAVLDIILKNKKGRIDQIFRL 481 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 A +HW +R RP +G I R IG +IT KK+ E +L +A D+LTG+PN+Q Sbjct: 482 SAGGGYYHWFSLRARPAMQKDGKITRVIGSIVNITNHKKAEERLLHDAIHDSLTGLPNQQ 541 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F DRL L+ + +RP+V +ID D +++IN LGIAVGD VL+ + RR+ L+ F Sbjct: 542 IFFDRLQNYTSLAKANIKVRPSVFMIDFDNFRQINRKLGIAVGDTVLLIIARRLSRLINF 601 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D L+RLS +RF IIL+SE KIA FA + K+I+ PI+L E++IT++ SIG +W+ Sbjct: 602 QDTLSRLSADRFAIILLSETEPQKIAAFADHLHKTISAPISLTEKKITLSTSIGLVTWSE 661 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLV 723 S+ T+ ++L ++ELAM AK GGNH+E FR + D + +D+ A++ +E+ ++ Sbjct: 662 SRSTAKDILNDSELAMIRAKQMGGNHIEPFRPNFRSLDLGHNTMGQDIHYAIKRNEIKIL 721 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 YHPI+ L D +I+G E +++W HP +GN++ S+F+ I E ++ + F+++ D+I Sbjct: 722 YHPILNLSDGQIIGFETILEWHHPNYGNLNVSDFIKIVENEQIVMDLAQFIIDNAVIDLI 781 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 + +++ FI IN+ S +++ +++ + + + + + SE V+ NPE+ Sbjct: 782 NVQEKFLQQSFFISINLPSAEMIHPRFINQLRSTLLRHPLNKESLMIEISEFVLRKNPEQ 841 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903 S L +++ +G++L LD+FGT S L+YL PFD VK + SL++ + K+ +L+SII Sbjct: 842 SAHFLEQIKTLGMNLALDNFGTGYSSLAYLVRYPFDMVKLDRSLISIDSPKKKLVLKSII 901 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 MA ++ IIA+ + E + L + GC Y+Q + V P+ ++ L++ FP Sbjct: 902 NMAIDLNLQIIAEGVENEKEAIFLRQEGCKYVQSTLVTKPIAIEELITLVQNHFP 956 >gi|240850093|ref|YP_002971486.1| sensor diguanylate cyclase/phosphodiesterase [Bartonella grahamii as4aup] gi|240267216|gb|ACS50804.1| sensor diguanylate cyclase/phosphodiesterase [Bartonella grahamii as4aup] Length = 961 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 396/933 (42%), Positives = 596/933 (63%), Gaps = 2/933 (0%) Query: 28 PSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGD 87 + AIEP+ ISS D LDL+ I+ FQ TA DGI RIEV A + + G+ Sbjct: 24 SAQAIEPVKISSQDAALDLSQAIEIHHTNSSIFQTSTAPGPDGIVWRIEVQAKNEKFSGN 83 Query: 88 WAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSD 147 WAVF+LAN +D Q++RLIV PHYR+ S FF PDLGS RI S+TPSEGFSLDR +++SD Sbjct: 84 WAVFSLANPTDEQVDRLIVAPHYRMARSGFFWPDLGSARIQSITPSEGFSLDRQLSANSD 143 Query: 148 VFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLT 207 +FRIT+NPGAVVTF+ E+++ NLPQIYLW+P YKD +NS+TLY GI++G++ LLA+ LT Sbjct: 144 IFRITLNPGAVVTFVAELNSANLPQIYLWQPEAYKDAINSYTLYHGILLGISGLLALLLT 203 Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 + ++V + + T A+AW VL YI IDF FL+K + IWRA +E+AL+++L I Sbjct: 204 VLFVVRGTGLFPATAAVAWAVLFYIGIDFNFLNKFFAVTLTTQPIWRAGTEVALTATLFI 263 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 FLF YL NRWH Y + L + Y P+ A IAR++ + II Sbjct: 264 FLFTYLSLNRWHYHFSYGAIAWTIAFCSLGAFAIYDPIRAAGIARLSFGLTAVLGIILII 323 Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 Y ++ Y+RA++LIP W+LI W IG + I L+NDIIQPAL GGLVLIV+LI FTV+ Sbjct: 324 YFSIRSYDRAIMLIPTWLLISFWCIGAYACIAGYLNNDIIQPALAGGLVLIVLLISFTVL 383 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q + F +GIFSD E+Q LA G+G+I+WDW+I RDR+ P++AT+LG +++G Sbjct: 384 QQTFSNDAFHEGIFSDLEQQVLAAKGAGNIIWDWNIERDRIVVHPNMATLLGTEIHNLNG 443 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 P+RNW+ +H +DR+ F+ +LD + ++GR+ FR+ + +HW +R RP +G Sbjct: 444 PMRNWISALHHDDRERFQAVLDIILKNKKGRIDQIFRLSSGGGYYHWFSLRARPAMQKDG 503 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 I R IG +IT KKS E +L +A D+LTG+PN+Q F DRL L+ + +RPT Sbjct: 504 KITRVIGTIVNITNHKKSEERLLHDAIHDSLTGLPNQQIFFDRLQNYTSLAKANIKIRPT 563 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V +ID D +++IN LGIAVGD VL+ + RR+ L+ F D L+RLS +RF IIL+SE Sbjct: 564 VFMIDFDNFRQINRKLGIAVGDTVLLIIARRLNRLINFQDTLSRLSADRFAIILLSETEP 623 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 KIA FA + K+I+ PI+L E +I ++ SIG +W+ S+ T+ ++ ++ELAM AK Sbjct: 624 QKIAAFADHLHKTISAPISLSENKIILSTSIGLVTWSESRSTAKDIFNDSELAMIRAKQM 683 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GGNH+E FR + + +++D+ A++ +E+ ++YHPI+ L D I+G E +++W Sbjct: 684 GGNHIEPFRPNFRTLGLEHNTLEKDVHYAIKRNEIKILYHPILNLSDGHIIGFETIVEWH 743 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP +GN++ S+F+ I E ++ ++ F+++ D+I+ +++ + FI IN+ S ++ Sbjct: 744 HPTYGNLNVSDFIKIVENEQIVMNLSQFIIDNAIIDLINVQEKFSQQSFFISINLPSAEM 803 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + ++A + + R+ + SE V+ NPE+S L +++ +G++L LD+FGT Sbjct: 804 IHPRFISQLRAALLRHPLHKGRLMIEISEFVLRNNPEQSAHFLEQIKTLGMNLALDNFGT 863 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL PFD VK + SL++ + K+ +L+SII MAK++ IIA+ + E + Sbjct: 864 GYSSLTYLVRYPFDMVKLDRSLISIDSLKKKIVLKSIINMAKDLNLQIIAEGVENEKEAI 923 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 L + GC Y+Q + V P+ ++ L++ FP Sbjct: 924 FLRQEGCKYVQSTLVTKPIAIEELITLVQSHFP 956 >gi|121602305|ref|YP_988729.1| sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase [Bartonella bacilliformis KC583] gi|120614482|gb|ABM45083.1| sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase [Bartonella bacilliformis KC583] Length = 958 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 393/954 (41%), Positives = 605/954 (63%), Gaps = 4/954 (0%) Query: 6 SLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTA 65 SLR F + LF+ S + AIEP+ ISS D +DL+ +I+ FQ T Sbjct: 3 SLRKIVSVIFFAINLFIHL--SLAQAIEPVKISSQDAAIDLSKAVQIHRTNSSIFQTSTV 60 Query: 66 ADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125 DG+ RIEV AS G+WAVF+LAN ++ Q++RLIV PHYR+ S F PDLGS Sbjct: 61 PGPDGVIWRIEVQASHENFSGNWAVFSLANPTNEQIDRLIVAPHYRIANSGFLWPDLGSA 120 Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTV 185 RI S+TPSEGFSLDR +++SDVFRIT+NPGAV+TF+ E+S+ NLPQIYLW+P YKDT+ Sbjct: 121 RIQSITPSEGFSLDRQASTNSDVFRITLNPGAVITFVAELSSENLPQIYLWKPEAYKDTL 180 Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245 NS+TLY GI++G++ LLA+ LT+ ++V + + T A+AW VL YI IDF FL+KL + Sbjct: 181 NSYTLYHGILLGISGLLALLLTVLFVVRGTGLFPATAAVAWAVLFYIGIDFNFLNKLFAI 240 Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305 IWRA +E++L+++L IFLF YL NRWH Y + I + L + Y P Sbjct: 241 TPITEPIWRAATEVSLAATLFIFLFTYLCLNRWHYHFSYGAIAWIIALCGLGAFAIYDPT 300 Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365 A IAR++ + T I Y ++ Y+RA++LIP W+LI W G ++ I L+ND Sbjct: 301 RAAGIARLSFGLTTILGTILISYFSIRNYDRAIMLIPTWLLIIFWSFGAYICIAGNLNND 360 Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 II AL GGLVLIV+LI FT++Q + F +GIFSD ERQ+LA G+G I+WDW++ R Sbjct: 361 IIPSALAGGLVLIVLLISFTIMQQTFSNEPFHEGIFSDLERQALAARGAGSIIWDWNVER 420 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 D + PD+ I G ++G + NW+ +H +DR++F+ LD + + GR+ FR+ Sbjct: 421 DHIAIHPDMTAIFGKNIPQLNGTMHNWISALHHDDREHFQATLDIILKNKNGRINQIFRL 480 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 + D +HW+ +R RP +G + R IG +IT KK+ E +L +A DNLTG+PN+Q Sbjct: 481 SSGDGYYHWLSLRARPAIQKDGKVTRVIGTIINITNHKKAEERLLYDAIHDNLTGLPNQQ 540 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F DRL + L+ + +RPTV++ID D +++IN LGIA+GD VL+ + RR+ L+ Sbjct: 541 IFFDRLQSYTTLAKENIKIRPTVLMIDFDNFRQINRKLGIAIGDTVLLIIARRLNRLINV 600 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D L+RLS +RF IIL+SE + KIA FA +RK I+ PI+++E++IT++ SIG +W Sbjct: 601 QDTLSRLSADRFAIILLSETDPKKIAAFANHLRKIISAPIDIVEKKITLSTSIGLVTWNE 660 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLV 723 S+ T+ +L + ELAM HAK +GGNH+E FR + D I++D+ A++ +E+ ++ Sbjct: 661 SRPTAKNILNDCELAMIHAKQKGGNHIEPFRPNLRNLDLGYRNIEQDIHYAIKRNEMKIL 720 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 YHPI L D +I+G EA+++W HP +G+++ S+F+ +AE ++ + F+++ +I Sbjct: 721 YHPIFNLSDGQIIGFEAVLEWHHPNYGHLNVSDFIKVAENEQIVLNLAQFIIDEAVTSLI 780 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 + +++ FI IN+ S D+++ +L +++ + + + + SE V+ NPE+ Sbjct: 781 NIQEKCFQQSFFISINLPSADMINPDLINQLRSTLLCHPLNEGSLMIEISEFVLRKNPEQ 840 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903 S L +++ +GI+L LD+FGT S L+YL PF+ +K + SL++ ++ ++ +LRSII Sbjct: 841 SAHFLEKIKALGINLALDNFGTGYSSLTYLVRYPFNMIKLDRSLVSINSPEKQLVLRSII 900 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +A ++ IIA+ + E + L + GC YIQ + + P+ +++ L++ RF Sbjct: 901 NIATDLNLQIIAEGVENEKEAIFLKKEGCQYIQSTIITKPVTVEALISLVQNRF 954 >gi|319898536|ref|YP_004158629.1| hypothetical protein BARCL_0362 [Bartonella clarridgeiae 73] gi|319402500|emb|CBI76043.1| conserved membrane protein of unknown function [Bartonella clarridgeiae 73] Length = 961 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 384/936 (41%), Positives = 585/936 (62%), Gaps = 2/936 (0%) Query: 27 SPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRG 86 + + AIEPI IS D +DL+ I+ FQ TA DGI RIEV A S G Sbjct: 23 ASAQAIEPIKISPQDIAIDLSKAIEIHHTNNSIFQTSTAPGPDGIIWRIEVQAKSENFSG 82 Query: 87 DWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDS 146 +WAVFALAN +D Q++RLIV+PHYR+ S F P+LGS RI S+TPS GFSLDR N++S Sbjct: 83 NWAVFALANPTDEQIDRLIVIPHYRMAHSGFLWPNLGSVRIQSITPSAGFSLDRQTNANS 142 Query: 147 DVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFL 206 D+FRIT+NPG V+TF+ E+S+ NLPQIYLW+P YKDT+NS+TLY GI++G++ LLA+ L Sbjct: 143 DIFRITLNPGTVITFVAELSSKNLPQIYLWQPEAYKDTINSYTLYHGILLGISGLLALLL 202 Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266 TI ++V +S+ T A+AW VL YI IDF F +K+ + IWRA +E+AL+++L Sbjct: 203 TILFVVRGTSLFPATAAVAWAVLFYIGIDFNFWNKIFAITPITEPIWRAGTEVALAATLF 262 Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326 IFLF YL NRWH Y I + L + Y P A IAR++ + I Sbjct: 263 IFLFTYLCLNRWHYHFSYGAIIWIISLCGLGAFAIYDPSRAAGIARLSFGLTTILGIILI 322 Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 Y ++ Y+RA++LIP W+LI W + + I LDNDI+QPAL GGLVLIV+LI F V Sbjct: 323 GYFSIRRYDRAIMLIPTWLLISFWSLEAYACIIGYLDNDIVQPALAGGLVLIVLLISFLV 382 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 +Q + F +GIFSD ERQ LA G+G I+WDW++ RDR+ PD+ T+ G + ++ Sbjct: 383 MQQTFSNDAFHEGIFSDLERQVLAARGAGSIIWDWNVERDRIVVHPDMTTLFGPETCKLN 442 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G + +W+ +H +DR+ F+ +L+ + +++GR+ FR+ + +HW +R RP + Sbjct: 443 GTMSDWISALHYDDRERFQAVLNIILEHKKGRIDQIFRLSSGGGHYHWFSLRARPAIQKD 502 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G I R IG +IT KK+ E +L +A D+LTG+PN+Q FLDRL L+ + +RP Sbjct: 503 GKITRVIGSIVNITNHKKAEERLLYDAIHDSLTGLPNQQIFLDRLQNYASLAKANIKIRP 562 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 T+ +ID D +++IN LGIAVGD VL+ + RR+ L+ D L+RLS +RF IIL+SE Sbjct: 563 TIFMIDFDNFRQINRKLGIAVGDTVLLIIARRLSRLINLQDTLSRLSADRFAIILLSETE 622 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 KIA FA + K+I+ PI L ++ I ++ASIG +W+ +++T+ + ++ELAM HAK Sbjct: 623 PKKIAMFANHLHKTISAPITLEKKTIMLSASIGLVTWSDNRLTAQNIFNDSELAMIHAKQ 682 Query: 687 RGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 GGNH+E FR + D I +D+ A++ +E+ ++YHPI+ L D +I+G E +++W Sbjct: 683 MGGNHIEPFRPNFRTLDLEHNNINKDIHHAIKRNEIKILYHPILNLSDGQIIGFETIVEW 742 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP GN++ +F+ I E ++ + F+++ D+I+ +++ P FI IN+ S + Sbjct: 743 HHPNHGNLNVHDFIKIVESEQLVMDLVQFIIDHAIVDLINIQEKCTKHPFFISINLPSAE 802 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 ++ + +++ + + + R+ + SE V+ NPE+S +++ +G++L LD+FG Sbjct: 803 MIHPDFISQLRSTLLRNPVNKGRLMIEISELVLRKNPEQSAHFFEQIKSLGMNLALDNFG 862 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 T S L+YL PFD VK + SL++ + K+ +L+SII MA ++ IIA+ + E + Sbjct: 863 TGYSSLTYLVRYPFDMVKLDRSLISIDSPKKKLVLKSIIRMATDLNLQIIAEGVENEKEA 922 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 L + GC Y+Q + V P+ ++ L++ F Sbjct: 923 IFLRQEGCKYVQSTIVTKPIAIEELVALVQNHFSHT 958 >gi|319406870|emb|CBI80505.1| conserved membrane hypothetical protein [Bartonella sp. 1-1C] Length = 960 Score = 803 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 387/948 (40%), Positives = 585/948 (61%), Gaps = 2/948 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 L++++ L +S + AIEPI IS D LDL+ I+ FQ TA DGI R Sbjct: 11 VLVIIINLFVCLSSARAIEPIKISPQDIALDLSKAIEIHHTNNPIFQTSTAPGPDGIIWR 70 Query: 75 IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134 IEV A S G+WAVF+LAN +D Q++RLIVVPHYR+ S F PDLGS RI S+TPS Sbjct: 71 IEVQAKSENFSGNWAVFSLANPTDEQIDRLIVVPHYRMAHSGFLWPDLGSVRIQSITPSA 130 Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGI 194 GFSLDR N+++D+FRIT+NP V+TF+ E+S+ NLPQIYLW+P YKDT+NS+TLY GI Sbjct: 131 GFSLDRQTNANADIFRITLNPNTVITFVAELSSKNLPQIYLWQPEAYKDTINSYTLYHGI 190 Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254 ++G++ LLA+ LTI ++V +S+ T A+AW VL YI IDF F +KL + IWR Sbjct: 191 LLGISGLLALLLTILFVVRGTSLFPATAAVAWAVLFYIGIDFNFWNKLFAITPITEPIWR 250 Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314 A +E+AL+++L FLF YL NRWH Y I L + Y P A IAR++ Sbjct: 251 AGTEVALAATLFTFLFTYLCLNRWHYHFSYGAIIWIISFCGLGAFAIYDPTKAAGIARLS 310 Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374 + I Y ++ Y+RA++LIP W+LI W + + I LDNDI+ AL GG Sbjct: 311 FGLTTILGIILISYFSIRRYDRAIMLIPTWLLISFWSLEAYACIIGYLDNDIVPQALAGG 370 Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 LVLIV+LI F V+Q + F +GIFSD ERQ LA G+G I+WDW++ RDR+ PD+ Sbjct: 371 LVLIVLLISFLVMQQTFSNDAFHEGIFSDLERQVLAARGAGSIIWDWNVERDRIVVHPDM 430 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 ++ G + ++G + +W+ +H +DR+ F+ +L+ + +++GR+ FR+ + +HW Sbjct: 431 TSLFGAYTRKLNGTMSDWISALHYDDRERFQAVLNIILEHKKGRIDQIFRISSGGGHYHW 490 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 +R RP +G I R IG +IT KK+ E +L +A D+LTG+PN+Q FLDRL Sbjct: 491 FSLRARPAIQKDGKITRVIGSILNITNHKKAEERLLHDAIHDSLTGLPNQQIFLDRLQNY 550 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L+ + ++PT+ +ID D +++IN LGIAVGD VL+ + RR+ L+ D L+RLS Sbjct: 551 SSLAKANIKIKPTIFMIDFDNFRQINRKLGIAVGDTVLLIIARRLSRLINLQDTLSRLSA 610 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 +RF IIL+SE KIA FA + K+I+ PI L E+ IT++ SIG +W+ +K T+ + Sbjct: 611 DRFAIILLSETEPKKIAMFANHLHKTISAPITLEEKTITLSTSIGLVTWSDNKSTAQNIF 670 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++ELAM HAK GGNH+E FR S + I +D+ A++ +E+ ++YHPI+ L D Sbjct: 671 NDSELAMIHAKQMGGNHIEPFRPSFRTLDIEHNNINKDIHHAIKRNEIKILYHPILNLSD 730 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I+G E +++W HP GN++ +F+ I E ++ + F+++R D+I+ +++ Sbjct: 731 GNIIGFETIVEWQHPNHGNLNIHDFIKIVESEQLVMDLVQFIVDRALADLINIQEKCAKH 790 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 P FI IN+ S +++ + +++ + + S R+ + SE V+ NPE+S ++ Sbjct: 791 PFFISINLPSAEMIHPDCIRQLRSALLRNPVSKGRLMIEISELVLRKNPEQSAHFFEEIK 850 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT 912 +G++L LD+FGT S L+YL PFD VK + SL++ + K+ +L+SII MA ++ Sbjct: 851 ALGMNLALDNFGTGYSSLTYLVRYPFDMVKLDRSLISIDSHKKKLVLKSIIRMATDLNLQ 910 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 IIA+ + E + L + GC Y+Q + V P+ ++ L++ F Sbjct: 911 IIAEGVENEKEAIFLRQEGCKYVQSTTVTKPIAVEELIALVQNHFSHT 958 >gi|163867886|ref|YP_001609090.1| hypothetical protein Btr_0661 [Bartonella tribocorum CIP 105476] gi|161017537|emb|CAK01095.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 961 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 401/959 (41%), Positives = 603/959 (62%), Gaps = 3/959 (0%) Query: 6 SLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTA 65 SLR +I+V F + + S + AIEP+ ISS D VLDL+ I+ F+ TA Sbjct: 3 SLRKIINIICIIVVSFFVHLTS-AHAIEPVKISSQDAVLDLSKAIEIHHTNNSIFKTSTA 61 Query: 66 ADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125 DGI RIEV A S + G+WAVF+LAN +D Q++RLIV PHYR+ S FF PDLGS Sbjct: 62 PGPDGIVWRIEVQAKSEKFSGNWAVFSLANPTDEQVDRLIVAPHYRMARSGFFWPDLGSA 121 Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTV 185 RI S+TPSEGFSLDR P+++SD+F IT+NPGAVVTF+ E+++ NLPQIYLW+P YKD++ Sbjct: 122 RIQSITPSEGFSLDRQPSTNSDIFHITLNPGAVVTFVAELNSENLPQIYLWQPEAYKDSI 181 Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245 NS+TLY GI++G++ LLA+ LT+ ++V + + T A+AW VL YI IDF FL+K + Sbjct: 182 NSYTLYHGILLGISGLLALLLTVLFVVRGTGLFPATAAVAWSVLFYIGIDFNFLNKFFAV 241 Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305 IWRA +E+AL+++L IFLF YL+ NRWH Y + I L + Y P+ Sbjct: 242 TLTTQPIWRASTEVALAATLFIFLFTYLNLNRWHYHFNYGAIAWIIAFCSLGAFAIYDPI 301 Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365 A IAR++ + IIY ++ Y+RA++LIP W+LI W +G I L+ND Sbjct: 302 RAAGIARLSFGLTAVLGILLIIYFSIRSYDRAIMLIPTWLLISFWCVGAHACIKGHLNND 361 Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 IIQPAL GGLVLIV+LI FTV+Q + F +GIFSD E+Q LA G+G+I+WDW+I R Sbjct: 362 IIQPALAGGLVLIVLLISFTVLQQTFSNDAFHEGIFSDLEQQVLAAKGAGNIIWDWNIER 421 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 DR+ P++ T+ G +++G +RNW+ +H +DR+ F+ +LD + ++GR+ FR+ Sbjct: 422 DRIVVHPNMTTLFGTEIHNLNGTMRNWISALHYDDRERFQAVLDIILKNKKGRIDQIFRL 481 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 + +HW +R RP +G I R IG +IT KKS E +L +A D+LTG+PN+Q Sbjct: 482 SSGGGYYHWFSLRARPAMQKDGKITRIIGTIVNITNHKKSEERLLHDAIHDSLTGLPNQQ 541 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F DRL L+ + +RPTV +ID+D +++IN LGIAVGD VL+ + RR+ L+ F Sbjct: 542 IFFDRLQNYTSLAKANIKIRPTVFMIDLDNFRQINRKLGIAVGDTVLLIIARRLNRLINF 601 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D L+RLS +RF IIL+SE S KIA FA + K+I+ PI+L E +I ++ SIG +W+ Sbjct: 602 QDTLSRLSADRFAIILLSETESEKIAAFADHLHKTISAPISLSENQIILSTSIGLVTWSE 661 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLV 723 S+ T+ ++ ++ELAM AK GGNH+E FR + +++D+ A++ E+ ++ Sbjct: 662 SRSTAKDIFNDSELAMIRAKQMGGNHIEPFRPNFRTLGLEQNILEKDIHYAIKRHEMKIL 721 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 YHPI+ L D I+G E +++W HP +G ++ S+F+ I E ++ ++ F+++ D+I Sbjct: 722 YHPILNLSDGHIIGFETIVEWHHPTYGKLNISDFIKIVENEQIVMDLSQFIIDNAIVDLI 781 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 + ++ FI IN+ S +++ ++A + + R+ + SE V+ NPE+ Sbjct: 782 NVEEKFFQQSFFISINLPSAEMIHPRFISQLRAALLRHPLHKGRLMIEISEFVLRNNPEQ 841 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903 S L +++ +G++L LD+FGT S L+YL PFD VK + SL++ + K+ +L+SII Sbjct: 842 SAHFLEQIKTLGMNLALDNFGTGYSSLTYLVRYPFDMVKLDRSLISIDSLKKKLVLKSII 901 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 MA ++ IIA+ + E + L + GC Y+Q + V PL ++ L++ FP Sbjct: 902 NMATDLNLQIIAEGVENEKEAIFLRQEGCKYVQSTLVTKPLAIEELITLVQSHFPYKTR 960 >gi|319403858|emb|CBI77444.1| conserved membrane hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 960 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 392/948 (41%), Positives = 584/948 (61%), Gaps = 2/948 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 L++++ L +S AIEPI IS D LDL+ I+ FQ TA DGI R Sbjct: 11 VLVIIISLFVCLSSVQAIEPIKISPQDIALDLSKAIEIHHTNNPIFQTSTAPGPDGIIWR 70 Query: 75 IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134 IEV A S G+WAVF+LAN +D Q++RLIVVPHYR+ S F PDLGS RI S+TPS Sbjct: 71 IEVQAKSENFSGNWAVFSLANPTDEQIDRLIVVPHYRMAHSGFLWPDLGSVRIQSITPSA 130 Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGI 194 GFSLDR N+++D+FRIT+NP V+TF+ E+S+ NLPQIYLW+P YKDT+NS+TLY GI Sbjct: 131 GFSLDRQTNANADIFRITLNPNTVITFVAELSSKNLPQIYLWQPEAYKDTINSYTLYHGI 190 Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254 ++G++ LLA+ LTI ++V +S+ T A+AW VL YI IDF F +KL + IWR Sbjct: 191 LLGISGLLALLLTILFVVRGTSLFPATAAVAWAVLFYIGIDFNFWNKLFAITPITEPIWR 250 Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314 A +E+AL+++L FLF YL NRWH Y I L + Y P A IAR++ Sbjct: 251 AGTEVALAATLFTFLFTYLCLNRWHYHFSYGAIIWIISFCGLGAFAIYDPTRAAGIARLS 310 Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374 + I Y ++ Y+RA++LIP W+LI W + + I LDNDI+ AL GG Sbjct: 311 FGLTTILGIILISYFSIRKYDRAIMLIPTWLLISFWSLEAYACIIGYLDNDIVPQALAGG 370 Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 LVLIV+LI F V+Q + F +GIFSD ERQ LA G+G I+WDW++ RDR+ PD+ Sbjct: 371 LVLIVLLISFLVMQQTFSNDAFHEGIFSDLERQVLAARGAGSIIWDWNVERDRIVVHPDM 430 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 ++ G + ++G + +W+ +H +DR+ F+ +L+ + + GR+ FR+ + +HW Sbjct: 431 TSLFGKHARKLNGTMNDWILALHYDDRERFQAVLNIILENKTGRIDQIFRISSGGGHYHW 490 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 +R RP +G I R IG +IT KK+ E +L +A D+LTG+PN+Q FLDRL Sbjct: 491 FSLRARPAIQKDGKITRVIGSILNITNHKKAEERLLHDAIHDSLTGLPNQQIFLDRLQNY 550 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L+ + ++PT+ +ID D +++IN LGIAVGD VL+ + RR+ L+ D L+RLS Sbjct: 551 SSLAKANIKIKPTIFMIDFDNFRQINHKLGIAVGDTVLLIIARRLSRLINLQDTLSRLSA 610 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 +RF IIL+SE KIA FA + K+I+ PI L E+ IT++ SIG A+W+ +K T+ + Sbjct: 611 DRFAIILLSETEPKKIAMFANHLLKTISAPITLEEKTITLSTSIGLATWSDNKSTAQNIF 670 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++ELAM HAK GGNH+E FR S D IK+D+ A+E +E+ ++YHPI+ L D Sbjct: 671 NDSELAMIHAKQMGGNHIEPFRPSFRTLDLEHNNIKKDIHHAIERNEIKILYHPILNLSD 730 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I+G E +++W HP GN++ +F+ I E +I + F+++R D+I+ +++ Sbjct: 731 GNIIGFETIVEWQHPNHGNLNIHDFIKIVESEQLIMDLVQFIVDRALVDLINIQEKCAKH 790 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 P FI IN+ S +++ + +++ + + S R+ + SE V+ NPE+S ++ Sbjct: 791 PFFISINLPSAEMIHPDCIRQIRSALLRNPVSKGRLMIEISELVLRKNPEQSAHFFEEIK 850 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT 912 +G++L LD+FGT S L+YL PFD VK + SL++ + K+ +L+SII MA ++ Sbjct: 851 ALGMNLALDNFGTGYSSLTYLVRYPFDMVKLDRSLISIDSHKKKLVLKSIIRMATDLNLQ 910 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 IIA+ + E + L + GC Y+Q + V P+ ++ L++ F Sbjct: 911 IIAEGVENEKEAIFLRQEGCKYVQSTTVTKPIAVEELIALVQNHFSHT 958 >gi|319408226|emb|CBI81879.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis R1] Length = 963 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 378/938 (40%), Positives = 577/938 (61%), Gaps = 3/938 (0%) Query: 28 PSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGD 87 + AIEPI IS D +DL+ I+ FQ TA DGI RIEV A++ G Sbjct: 24 SAQAIEPIKISPQDTAIDLSKAIEIHHTNNPIFQTSTAPGPDGIIWRIEVQANNENFSGS 83 Query: 88 WAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSD 147 WAVFALAN +D Q++RLIV PHYR+ S F PDLGS RI S+TP+EGFSLDR +++SD Sbjct: 84 WAVFALANPTDEQIDRLIVAPHYRIANSGLFWPDLGSTRIQSITPNEGFSLDRQASTNSD 143 Query: 148 VFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLT 207 +FRIT+NPGAV+TF+ E+++ NLP+IYLW+P YKDT+NS+TLY GI++G++ LLA+ LT Sbjct: 144 IFRITLNPGAVITFVAELNSANLPKIYLWKPEAYKDTINSYTLYHGILLGISGLLALLLT 203 Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 + ++V + + T A+AW +L YI IDF FL+KL + IWRA +EIAL+++L I Sbjct: 204 VLFVVRGTGLFPATAAVAWAILFYIGIDFNFLNKLFAITPTIEPIWRASTEIALAATLFI 263 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 FLF YL NRWH Y I + L + Y P A IAR++ + I Sbjct: 264 FLFTYLCLNRWHYHFSYGAIIWIIALCGLGTFAIYDPTRAAGIARVSFGLTTILGIILIS 323 Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 Y ++ Y+RA++LIP W+LI W I + I LDNDIIQPAL GGLVL V+LI FT++ Sbjct: 324 YFSIRRYDRAIMLIPTWLLISFWSIAAFACIEGYLDNDIIQPALAGGLVLTVLLISFTIM 383 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q + F +GIFSD E+Q+LA G+G+I+WDWD+ RDR+ PD+ + G + ++G Sbjct: 384 QQTFSHDAFYEGIFSDLEQQALAAKGAGNIIWDWDVERDRIVVHPDMTPLFGTEAHKLNG 443 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSN 506 + +W+ +H +DR++F +LD + ++GR+ FR+ +HW +R P + + Sbjct: 444 TMNDWISALHHDDREHFHAMLDIILKNKKGRIDQIFRLSCGGGHYHWFSLRASPAIVKKD 503 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G + R IG +IT KK+ E +L NA DNLTG+PN+Q FLDRL + L+ + ++P Sbjct: 504 GKVTRVIGTIINITNHKKAEERLLHNAIYDNLTGLPNKQIFLDRLQHYISLAKVNIKIKP 563 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 TV++ID D +++IN LGIAVGD VL+ + RR+ L+ D L RL +RF IIL+SE Sbjct: 564 TVLMIDFDNFRQINHKLGIAVGDTVLLIIARRLSRLINTQDTLTRLFADRFAIILLSEIE 623 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 KIA F + K+I+ PI+L E+EI+++ SIG +W ++ + ++ ++ELAM AK Sbjct: 624 PQKIAAFVNHLHKTISAPISLAEQEISLSTSIGLVTWNECRLNAKDIFHDSELAMIQAKQ 683 Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 GGN + FR + I+ D+ A++++E+ ++YHPI L D +I+G EA+++W Sbjct: 684 MGGNDIVPFRPNFRTLGLKHNNIEHDIHSAIKHNEIKILYHPIFNLSDGQIIGFEAIVEW 743 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP GN++ ++F+ I E + + F+++ D+I + + P FI IN+ S + Sbjct: 744 HHPYHGNLNVNDFIKIVESEQITTDLAQFIIDNAIADLIKIKKKCAQQPFFISINLPSVE 803 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 ++ +++ + + + + + SE V+ NPE+S L +++ +G++L LD FG Sbjct: 804 MIHPNFISQLRSTLLRNPLNKGHLMIEVSEFVLRKNPEQSAHFLEQIKALGMNLALDHFG 863 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 T S L+YL PFD VK + S ++ + K+ +L+SII MA ++ IIA+ + E Sbjct: 864 TGYSSLAYLVRYPFDMVKLDRSFVSLDSPKKKLVLKSIINMATDLNLQIIAEGVEDEKVA 923 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 L + GC YIQ + + P+ ++ L++ +F K+ Sbjct: 924 LFLRQEGCKYIQSTIITKPITAEELITLIQNQFSYKKS 961 >gi|319405299|emb|CBI78913.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3] Length = 957 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 390/940 (41%), Positives = 587/940 (62%), Gaps = 2/940 (0%) Query: 22 LLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASS 81 L +S + AIEPI IS D LDL+ I+ FQ TA DGI RIEV A S Sbjct: 18 LFVCLSSAQAIEPIKISPQDIALDLSKAIEIHRTNNPIFQTSTAPGPDGIIWRIEVQAKS 77 Query: 82 IRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRI 141 G+WAVF+LAN +D Q++RLIVVPHYR+ S PDLGS RI S+TPS GFSLDR Sbjct: 78 ENFSGNWAVFSLANPTDEQIDRLIVVPHYRMAHSGLLWPDLGSVRIESITPSAGFSLDRQ 137 Query: 142 PNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASL 201 N+++D+FRIT+NPG V+TF+ E+S+ NLPQIYLW+P YKDT+NS+TLY GI++G++ L Sbjct: 138 TNANADIFRITLNPGTVITFVAELSSKNLPQIYLWQPEAYKDTINSYTLYHGILLGISGL 197 Query: 202 LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261 LA+ LTI ++V +S+ T A+AW VL YI IDF F +KL + IWRA +E+AL Sbjct: 198 LALLLTILFVVRGTSLFPATAAVAWAVLFYIGIDFNFWNKLFAITPITEPIWRAGTEVAL 257 Query: 262 SSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLY 321 +++L IFLF YL NRWH Y I + L + Y P A IAR++ + Sbjct: 258 AATLSIFLFTYLCLNRWHYHFSYGAIIWIISLCGLGAFAIYDPTRAAGIARLSFGLTAIL 317 Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381 I Y ++ Y+RA++LIP W+LI W + + I LDNDI+QPAL GGLVLIV+L Sbjct: 318 GIILISYFSIRRYDRAIMLIPTWLLISFWSLEAYACIIGYLDNDIVQPALAGGLVLIVLL 377 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I F V+Q + F +GIFSD ERQ LA G+G I+WDW++ RDR+ PD+A I G Sbjct: 378 ISFLVMQQTFSNDAFYEGIFSDLERQVLAARGAGSIIWDWNVERDRIVVHPDMAAIFGAN 437 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + ++G + +W+ +H +DR+ F+ +L+ + +++GR+ FR+ + +HW +R RP Sbjct: 438 NCKLNGTMSDWISALHYDDRERFQAVLNIILAHKKGRIDQIFRLSSGGGHYHWFSLRARP 497 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 +G I R IG +IT KK+ E +L +A D+LTG+PN+Q FLDRL L+ + Sbjct: 498 AIQKDGKITRVIGSIVNITNHKKAEERLLYDAIHDSLTGLPNQQIFLDRLQNYSSLAKAN 557 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++PT+ +ID D +++IN LGIAVGD VL+ + RR+ L+ D L+RLS +RF IIL Sbjct: 558 IKIKPTIFMIDFDNFRQINRKLGIAVGDTVLLIIARRLSRLINLQDSLSRLSADRFAIIL 617 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 +SE KIA FA + K+I+ PI L E+ IT+++SIG +W+ +K T+ + ++ELAM Sbjct: 618 LSETEPQKIAMFANHLHKTISAPITLEEKTITLSSSIGLVTWSDNKSTAQNIFNDSELAM 677 Query: 682 YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 HAK GGNH+E FR + + I +D+ A++ +E+ ++YHPI+ L D +I+G E Sbjct: 678 IHAKQMGGNHIEPFRPNFRTLNLEHNNINKDIHHAIKRNEIKILYHPILNLSDGQIIGFE 737 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 +++W HP GN++ +F+ I E ++ + F+++R D+I+ +++ P FI IN Sbjct: 738 TIVEWHHPNHGNLNVHDFIKIVESEQLVMDLVEFIVDRAIIDLINIQEKCAKNPFFISIN 797 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 + S +++ + +++ + + S R+ + SE V+ NPE+S +++ +G++L Sbjct: 798 LPSAEMIHPDFISQLRSSLLRNPVSKGRLMIEISELVLRKNPEQSAHFFEQIKALGMNLA 857 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919 LD+FGT S L+YL PFD VK + SL++ + + +L+SII MA ++ IIA+ + Sbjct: 858 LDNFGTGYSPLTYLVRYPFDMVKLDRSLISIDSHNKKLVLKSIIRMATDLNLQIIAEGVE 917 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 E + L + GC Y+Q + V P+ ++ L++ F L Sbjct: 918 NEKEAIFLRQEGCKYVQSTTVTKPIAVEELIALVQNHFSL 957 >gi|218509971|ref|ZP_03507849.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5] Length = 745 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 388/745 (52%), Positives = 532/745 (71%), Gaps = 2/745 (0%) Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN 276 ML T A+AW VLGYI +DFGFL KL+++ S + IWRAC+E+AL+SS +IFLF YL+ N Sbjct: 1 MLPATAALAWAVLGYICVDFGFLGKLISVASADQRIWRACAEVALASSFVIFLFTYLNLN 60 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 RWHA +GY T + + +A+LF ++ Y P + A IAR++ A IIY G Y+R Sbjct: 61 RWHAHLGYATLAWVLGLALLFGVAIYDPSIAAGIARLSFALTAATGLLLIIYLGFNRYDR 120 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A+LL+PAW L +W G W+ +T RLDNDIIQPAL GGLVLIV+LIGFTV+QH A G F Sbjct: 121 AILLVPAWALTLVWLFGAWLTVTGRLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAF 180 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 QG+FSD ERQSLA+ GSGD+VWDWD+ RDRV T PD++ LGL+ G+MHG RNWLP + Sbjct: 181 QQGLFSDLERQSLALTGSGDMVWDWDVARDRVVTIPDVSVKLGLSPGAMHGAARNWLPRL 240 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H +DRD FR LD + +RRGRL +EFR+RA D FHW++IR RP+ SNG+I+R +G Sbjct: 241 HPDDRDRFRATLDVLLEHRRGRLNHEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTI 300 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D+TEQK S+E +L +A DNLTG+PNRQ FLDRL +L L+ + LRPTVMVIDID+Y Sbjct: 301 VDVTEQKNSVERLLQDALHDNLTGLPNRQVFLDRLQAVLALAPGGETLRPTVMVIDIDRY 360 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND LG+A GD++L++LTRR+ L+K D LARL+G++FG+IL+SE+N K+ADFA A Sbjct: 361 KLVNDALGVAAGDNILIALTRRLRRLMKPQDTLARLAGDQFGLILVSEHNPAKVADFADA 420 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + K+I +PIN REI +TASIG ASW + ++S +L +AELAMY AK GGN VE F+ Sbjct: 421 VSKAIMVPINFSNREIILTASIGLASWVDRQESASGLLSDAELAMYRAKRAGGNRVEPFQ 480 Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + DR+ ++ DL A+E EL +VY PI RL D E+ G EAL++W+HPK G I Sbjct: 481 PAFRDFGTDRLQLETDLRRAIERRELSMVYQPIARLEDVEVAGFEALMRWEHPKRGTIPP 540 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 SEF+ IAE +I + +F LE+ D++SW++Q PIF+ IN++S LL+NEL + + Sbjct: 541 SEFIPIAEASDLIGPLGMFALEQATNDLMSWQNQTGELPIFVSINLSSVQLLNNELYDDV 600 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++++KT +PSR+KL +ES+VM NPE++RL+L +L++ GI L LDDFGT S L+YL Sbjct: 601 RSVLAKTHCAPSRLKLELTESMVMENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLT 660 Query: 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PFDT+K + +L+ ++K+ +LRS+I MA+ +E ++A+ I D EL +MGC Y Sbjct: 661 RFPFDTIKLDKALVRDGSDKKATVLRSVIAMARELEMKVVAEGIESNEDAIELAKMGCSY 720 Query: 935 IQDSHVASPLGFNSILKLLKERFPL 959 Q P+ S+L+LL++RFPL Sbjct: 721 GQSYLFGPPIPSESVLRLLRDRFPL 745 >gi|315122076|ref|YP_004062565.1| sensory box/GGDEF family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495478|gb|ADR52077.1| sensory box/GGDEF family protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 965 Score = 772 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 710/961 (73%), Positives = 821/961 (85%), Gaps = 13/961 (1%) Query: 10 HFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADID 69 + F ILV+F LWM PSFAIEPI ISSSD LDLT++T IYVN+GE+FQVFTAADID Sbjct: 11 ILKNNFSILVMFFLWMALPSFAIEPIKISSSDSALDLTAVTEIYVNRGENFQVFTAADID 70 Query: 70 GISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIIS 129 GISRRIEVSASSI+H+GDWAVFALANTSDSQLERLIVVPH+RLVGS FF PDLGSRRIIS Sbjct: 71 GISRRIEVSASSIKHQGDWAVFALANTSDSQLERLIVVPHFRLVGSRFFLPDLGSRRIIS 130 Query: 130 VTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFT 189 VTPSEGFSLDR+PN D+DVFRITINPGA+VTF+MEI++ NLPQIYLWEP+FYKDTVNSFT Sbjct: 131 VTPSEGFSLDRVPNPDADVFRITINPGAIVTFVMEITSSNLPQIYLWEPDFYKDTVNSFT 190 Query: 190 LYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGE 249 LY+GIIIG+ASLLA+FLT+ YMVN+SSML+ F MAWVVLGYI IDFGF+SKL+N PSGE Sbjct: 191 LYQGIIIGIASLLAVFLTVLYMVNKSSMLVSAFTMAWVVLGYICIDFGFISKLINSPSGE 250 Query: 250 LLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309 L IWRACSE+ALS SL+IFLF Y + NRW K+G+ITF+ I C+AILFC+SFYYP +TA Sbjct: 251 LPIWRACSEMALSLSLLIFLFTYFNLNRWRTKLGHITFAWITCLAILFCISFYYPSLTAG 310 Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369 IAR++ IVL T I Y G KGYER++LLIPAW+LI IW IG WMAITKRLDNDIIQ Sbjct: 311 IARLSFGGIVLLGTCCIFYLGKKGYERSILLIPAWMLIVIWSIGSWMAITKRLDNDIIQS 370 Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 AL GGLVLI++LIGFTVIQHVL +G SQGIF D E QSLAVLGSGDI+W+WD+V D+VT Sbjct: 371 ALDGGLVLIILLIGFTVIQHVLTSGNISQGIFPDVECQSLAVLGSGDIIWNWDVVHDKVT 430 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 TTPDIAT LGLA+GSMHG IRNWLP+IH++D+D+FRTILDSF+ YRRGRL++EFR+ A D Sbjct: 431 TTPDIATTLGLAAGSMHGAIRNWLPHIHLDDQDSFRTILDSFLEYRRGRLKHEFRIFAKD 490 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 QFHW+++RIRP+ N NG+ILR IGIANDIT QKKS++GIL NA QDNLTGIPN QSFLD Sbjct: 491 GQFHWIMLRIRPVLNVNGEILRCIGIANDITVQKKSIDGILYNALQDNLTGIPNLQSFLD 550 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 RLTTI+ LS D+NL P VMV+DIDKYK+IN LGIA+GDDVLV LTRRI LL+ D L Sbjct: 551 RLTTIISLSV-DNNLHPAVMVLDIDKYKQINRTLGIAIGDDVLVVLTRRIRSLLRSQDTL 609 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARLSG+RFGIIL SE + KIADFA+ + K++ MPI+LL REI VTASIGF SWTSSKIT Sbjct: 610 ARLSGDRFGIILTSEKDRTKIADFAMTVSKAVVMPIHLLNREIIVTASIGFVSWTSSKIT 669 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPI 727 S+EMLKNAELAMYHAK+RGGN +ESFR S SFRSD++ IKEDL A+ NSELYLVY+PI Sbjct: 670 STEMLKNAELAMYHAKNRGGNCIESFRPSLISFRSDKLRIKEDLSRAIINSELYLVYNPI 729 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 IRL DEEIVGLEAL+QW+HPK+GNI SS+FM IAEEL +IK+INLFMLERIA DII+WRD Sbjct: 730 IRLADEEIVGLEALLQWNHPKFGNIPSSKFMSIAEELSIIKSINLFMLERIAADIINWRD 789 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 QANMPPIF+ INI S LLD+ LCE +QA+ISKTL SPS IKL+FSES+VM NPE+S LL Sbjct: 790 QANMPPIFVSINIGSTVLLDDSLCEYIQAIISKTLCSPSGIKLAFSESIVMENPEKSCLL 849 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAK 907 L +LRK+GI LTLDDFGTKCSLLSYLGY+PFD +KFNGSLMTGST KRI++LRS++ +AK Sbjct: 850 LDKLRKMGIGLTLDDFGTKCSLLSYLGYMPFDAIKFNGSLMTGSTTKRISMLRSLVSIAK 909 Query: 908 NIETTIIA-----KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 +E IIA + I + L RMGCDYIQ SH+ SPL +SILKLLK+RFPLVKN Sbjct: 910 KLEVMIIAKDIYGE-IDTKE----LARMGCDYIQGSHITSPLRSSSILKLLKDRFPLVKN 964 Query: 963 T 963 T Sbjct: 965 T 965 >gi|154251136|ref|YP_001411960.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Parvibaculum lavamentivorans DS-1] gi|154155086|gb|ABS62303.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Parvibaculum lavamentivorans DS-1] Length = 991 Score = 747 bits (1930), Expect = 0.0, Method: Composition-based stats. Identities = 242/966 (25%), Positives = 435/966 (45%), Gaps = 30/966 (3%) Query: 22 LLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFT------------AADID 69 + + S A++ + + V+DLT + G + A D+D Sbjct: 24 MTLAPTMSRALDAVAMDDKRPVVDLTPYVENFAAAGRKLTIEPPSNGTADIDTAPARDMD 83 Query: 70 GISR---------RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 G I +S G W AL N S+ + RL+V FF P Sbjct: 84 GEENADAASMEDGSIVLSDGEGNASGMWRAVALRNRSEDLVTRLLVADRRSDGLLGFFWP 143 Query: 121 DL--GSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEP 178 R ++ + VF +T NP +T + IYLW Sbjct: 144 QPHIEIGRAVTAGGEDPIPAPAEAWPGFAVFSLTGNPETSMTVALHAEEETDAGIYLWHA 203 Query: 179 NFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238 + +L G ++ V + AI++ ++ + T A+ + +FG+ Sbjct: 204 EAWSSFTRRLSLIEGGMLAVVAAFAIYMAALGVLTGVAAARATAALLGAGFLVLLGEFGY 263 Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFC 298 L+ + +L L++R + S++ + +L R A + ++ + Sbjct: 264 LAMIFSLSPWWDLVFRTIALALFGSAVFMLERFFLESERHSATLAMVSRWLGYAVLAGIP 323 Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 ++F A R+ LA +L ++ ++G A LLIP L I Sbjct: 324 LAFLTASGAALYVRLFLAVALLAGAPLVVMAALRGVRPAQLLIPGAALFAIAGFFSAFHA 383 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT--GYFSQGIFSDGERQSLAVLGSGD 416 + GG+ + + + G +R + A+ G+ Sbjct: 384 AGWVPGTFAGTVFAGGIFTTALTLFAFAAAYHAQGGRRRADIGTLRSEQRHAFALSGARM 443 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 VWDWDI D++ +P + +LGL +G++ G W ++H DR+ +R L++++ Sbjct: 444 GVWDWDIAGDKLYVSPSVEAMLGLDAGTLDGNEVAWREHMHPADRETYRNALNAYIERGT 503 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 +FR+R +D F W+ + ++ R IG DI+ QK + E ++ ++ D Sbjct: 504 VSFTLDFRMRHSDGVFRWVALNASCVAGPENYATRCIGTVRDISAQKHAEERLMHDSVHD 563 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +LTG+PNR F+DR++ + + R +++ID+D++K +ND LG + GD +L+++ Sbjct: 564 SLTGLPNRALFMDRMSRAIRRRGLLERPRAALLLIDLDRFKTVNDSLGHSGGDALLIAIA 623 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 RR+ L+ D +AR+ G+ F ++L + FA + + PI + E+ T Sbjct: 624 RRLESLVTQDDTVARIDGDAFAVLLTTRTEREDALAFAEQASEFLRQPIEVAGHEVYPTC 683 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA 714 S+G A + E+ AE+AMY AK G +E F + S D + ++ DL A Sbjct: 684 SVGVAICEDAHEHPEELFTEAEIAMYRAKRSGKARIELFEPGMRSETDDHLTLETDLRHA 743 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 +E E+ L Y PI+ L D + G EALI+W+HPK G ++ F+ +AEEL +I I F Sbjct: 744 IERREMELYYQPIMSLTDGGVRGFEALIRWNHPKEGLLAPDNFVPLAEELGVITEIGRFA 803 Query: 775 LERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 L + ++ +W+ + + +N++S+ LL ++L + ++ ++++ +KL + Sbjct: 804 LRAASEELATWQKLFPMERALTVSVNVSSRQLLRHDLIDDVKRVLNRIDIERGTLKLEVT 863 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893 ES+VM NPE + +L R++ +G L+LDDFGT S LSYL PFDT+K + S + G + Sbjct: 864 ESLVMENPEFAASMLTRIKALGAGLSLDDFGTGYSSLSYLQRFPFDTLKVDRSFVAGMSV 923 Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 R I+RS++ +A ++ ++A+ E ++L MGCDY Q + P+ L Sbjct: 924 DRETPLIIRSMVTLAHDLGMEVVAEGTESESQARDLADMGCDYGQGYYFGQPMRAAEALD 983 Query: 952 LLKERF 957 + + Sbjct: 984 FIAHHW 989 >gi|312114494|ref|YP_004012090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodomicrobium vannielii ATCC 17100] gi|311219623|gb|ADP70991.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodomicrobium vannielii ATCC 17100] Length = 1096 Score = 705 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 296/969 (30%), Positives = 513/969 (52%), Gaps = 17/969 (1%) Query: 7 LRSHFEKAFLILVLF---LLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVF 63 LR + + L SP+ A+EPI + S+ +D+T + Y +G+ Sbjct: 16 LRGVARMVLCLCAAWTAAALMSSSPASAVEPIVVGSAQEKIDITLLGEFYERRGDKIAAE 75 Query: 64 TAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLG 123 TAA+ DGI+ R+ VSA + W VFAL+N +D + R + Y +V S F PDL Sbjct: 76 TAANADGIAGRMTVSAKTPGTNPSWIVFALSNPTDKPVMRFLSAQRYDIVNSGVFKPDLD 135 Query: 124 SRRIISVTPSEGFSLDRIPNSDS-DVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYK 182 + RI +VTPS GF +R+ + D D++R++I PG VTFI+E+++ ++P++YL + Sbjct: 136 APRITNVTPSLGFRPERVEDYDFLDIYRLSIEPGTTVTFIVELASASVPRLYLSSAQNFG 195 Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 + L GI++G+ LLA+F T+ + VN S+ +AW L Y+ +DFGF KL Sbjct: 196 KRLRDVNLLNGILLGITGLLALFFTVIFAVNHKSIFPAAALLAWSALAYLCVDFGFWHKL 255 Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 L S + +RA +E + ++SL+IFL+ +L+ WH+ + F I L Sbjct: 256 FQLSSEDNGTYRAMTEASFAASLVIFLYAFLNLRLWHSWISMAFFGWIVAQLGLIFFGLV 315 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362 T S+AR++L I + T I++ ++G ERA+ L+P W+L +W + +T ++ Sbjct: 316 DAQATMSLARLSLIPISVIGTAVIVFLALRGQERALSLLPVWMLFLLWLFAAAVIVTGKM 375 Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVW 419 D+ A+ GLV+ V+LIG TV Q+ + D + L A+ SG VW Sbjct: 376 SGDVAVVAISAGLVVFVMLIGLTVTQYAFQSADPG-ASGEDPGQFKLRVMALEASGASVW 434 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 +WD R+ + P++ LG+ G++ WL +H +DR+ R L + + G + Sbjct: 435 EWDGRRNEINAGPEVENALGVPPGTLRCSQDAWLQNLHASDRERMRLTLWTLRERQGGDI 494 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 EFR++ AD + W +R LR +G+ ++ QK++ E +L NA +D LT Sbjct: 495 NLEFRMKRADGGYLWYELRAAVTPQRTTRQLRGVGLLRNVNAQKRAQERLLHNAIRDGLT 554 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR+ FLDRL + + +NL+PTV +D+D K + A D VL++++RR+ Sbjct: 555 GLPNRELFLDRLQFAVARAQQ-ENLKPTVFFVDLDALKNQSRSADFATNDGVLLTISRRL 613 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 + D LAR+S +F I++ + IA A +R+S+ P+ + R++ +T SIG Sbjct: 614 QRYISQQDTLARVSALQFAILISDDTEPRHIAMLAERVRRSLRTPMKVGGRDLVLTGSIG 673 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717 A + ++ + ++L+ AE AMY AK G + +E F+ + ++ DL A+E Sbjct: 674 IAMYDGTQEHAEDLLREAESAMYRAKRAGPDRIELFKPEMRGATDERAIVQADLKHAIER 733 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 ++ ++Y PI+R+ DE + G+EA + W+HP G +S EF AE + + ++ ER Sbjct: 734 RQIRILYQPIMRIADERLAGMEAFVVWEHPTLGKLSLPEFEAAAEAAGLSGELWSYVFER 793 Query: 778 IARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 R W PI++ IN++S+ L ++L + ++ +I + ++L +E++ Sbjct: 794 CIRQGARWHRILQRDDPIYLSINMSSQQLFHHDLVQNLRLIIGRETLPKGALRLEIAETL 853 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR- 895 + NPE++ +L L+ + +S+ LD+FG S LSY + D +K + SL+T S + R Sbjct: 854 INANPEQAIEILDWLKSLNVSIALDEFGVSFSSLSYWNRLSIDAIKIDRSLVTLSDKDRS 913 Query: 896 -IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +L++++ +A + ++A I E D+ + +GCDY Q A + ++ LL Sbjct: 914 SAMVLKAVLSIAHELGKDVVAVGIDSEEDLAYVRALGCDYGQGFFYADLMSDKDVVNLL- 972 Query: 955 ERFPLVKNT 963 + ++T Sbjct: 973 --NAIARST 979 >gi|254701285|ref|ZP_05163113.1| diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|261751826|ref|ZP_05995535.1| GGDEF domain-containing protein [Brucella suis bv. 5 str. 513] gi|261741579|gb|EEY29505.1| GGDEF domain-containing protein [Brucella suis bv. 5 str. 513] Length = 759 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 379/745 (50%), Positives = 528/745 (70%), Gaps = 3/745 (0%) Query: 15 FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 F L +FL + AIEPI IS D LDL+ + N+GE QV T DGI RR Sbjct: 15 FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74 Query: 75 IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133 IEV + GDWA F++AN +D Q++RLIV PH+RLVGS PDLGS RI S+TPS Sbjct: 75 IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193 EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP YKD VNS+TLYRG Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194 Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 I++G++ LLA+FLTI ++V +S+ T A+AW VL YI +DFGF +KL+ + G IW Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 RA +E+AL++SL+IFLF YL+ NRWH Y + I + L ++ + P V + IARI Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 +LA V I Y +KGY+RAV+LIPAW+L IW IG WMA++ LDNDI+Q AL G Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 GLVLIV+LIGFTV+QH A G QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 IA LG + S+ GP+RNWLP +H +DRD FR+ LD+ + RRGR+ FR+RA D +H Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W +R RP+ S+G+++R +G ++TEQKK+ E +L +A DNLTG+PNR+ FLDRL++ Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +++++ + NL PTV VIDID++K++ND LG++ GD +L++++RR+ L+K D L+RLS Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++FG++L SE + +IA FA A+R+++ PI +REI +TASIG +WT + T+ + Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+AELAM+ AK GG+ +E FR + D++ ++ DL A+E E+ LVY PI++L Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734 Query: 732 DEEIVGLEALIQWDHPKWGNISSSE 756 + + G EAL++W+HP+ G IS SE Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSE 759 >gi|304310557|ref|YP_003810155.1| PAS sensor protein [gamma proteobacterium HdN1] gi|301796290|emb|CBL44498.1| PAS sensor protein [gamma proteobacterium HdN1] Length = 986 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 176/967 (18%), Positives = 353/967 (36%), Gaps = 42/967 (4%) Query: 14 AFLILVLFLLWMV-------SPSFAIEPINISSSDRV-LDLTSITRIYVNQGEDFQVFTA 65 AF L+ F + + + A++ + + ++L + R + + V Sbjct: 27 AFCALLFFAALIGVLGVPERAMAQALDGHRVDAQQPGGINLGRLVRYLEDSTDRLTVDQV 86 Query: 66 ADIDGISRRI---EVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDL 122 R +V H W ++ +D Q +RL+ V + L + Sbjct: 87 MAQPPQRWRTFQHDVPNLGYNHSAIWFNVSIDGLNDGQ-DRLLEVGYALLDHVDIWFVSE 145 Query: 123 GSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPNF 180 G T R +F + + V M + T LW Sbjct: 146 GQLLQHVRTGDHEPFSSREVAHRHFLFPVPHSESRSVDVWMRVRTEGTVEVPFTLWRTTD 205 Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 + + +G+ GV +++ + Y+ R + A +L + GF Sbjct: 206 FMQNEQHVLVLKGLYYGVIAVMIFYNCFIYLSVREVAYLYYVLYATSLLLFQVSLDGFAF 265 Query: 241 KL-VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299 + I + + +F +L K+ + IL Sbjct: 266 QWFWPEQIAFNEASFNLLIIFVLIFICLFSNSFLQLKDNFPKLSQLMIGTSVGGIILAAS 325 Query: 300 SFYYPMVTASIARITLAS-IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 S A + + ++ + ++ A + W + + ++ Sbjct: 326 SPLIAYADAIRMTMVFSISVLTFCLGAGVHLLFYKVSMARYYVAGWCFFLAGTVVVALSK 385 Query: 359 TKRLD-----NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413 + N+ IQ V+ + + + Q + E Sbjct: 386 FGVVPTTFFSNNAIQLGSSLEAVIFSLALADRINIDRHEKLLAKQEAIQNLEMFKSLYEN 445 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + + ++ + V+ P +A +LG + + + DRD++R ++ + Sbjct: 446 AIEGIFQCTVEGRFVSANPSMAQLLGYLTEEELVRNLPSVEEQTV-LDRDHYREFIEQVL 504 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R L YE + R D W + + M ++ G+ L G DI+ +KKS E + Sbjct: 505 K-RGQVLNYEAKGRRRDGTPFWASLSAKLMRSA-GEPL-IEGFTVDISSRKKSEEQLQYL 561 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D LTG+ NR+ F RL +L + + + ++ +D+D++K +ND G GD++L Sbjct: 562 AHHDPLTGLVNRREFEVRLQRMLFTAHR-EKVEHALLYMDLDQFKLVNDSCGHVAGDELL 620 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLERE 651 +T ++ + ++ D LARL G+ FG++L + A ++ + ++ Sbjct: 621 RQITWQLQQQMRSGDTLARLGGDEFGVLLERC-DRQNAFKVASKLKSVVQDFRFVWDDKF 679 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRVMI 707 + SIG S S + +++L A+ A Y AK G N + ++ + Sbjct: 680 FVLGVSIGLVSINSGSRSVADLLSLADSACYAAKDGGRNRIHEYQPGDKNLLLAQSEMQW 739 Query: 708 KEDLCLAVENSELYLVYHPII----RLMDEEIV--GLEALIQWDHPKWGNISSSEFMLIA 761 + A++ + L I+ M E + E LI+ G + F+ A Sbjct: 740 VGRINEALDQNLFVLYQQAIVPVVGDPMTGEEIWGHCEVLIRMRDAGGGILPPGAFLPAA 799 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E ++ AI+ ++++ + + S + ++ +N++ L E + S Sbjct: 800 ERYNLMPAIDRWVIKTLFSFLASHPELTTPNHLY-AVNLSGASLGGEEFENYVLEQFSLW 858 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P I +E++ + N + + +L+ IG S +LDDFG+ S YL +P D + Sbjct: 859 NIPPQLICFEITETMAVTNLAVTSQFMTKLKAIGCSFSLDDFGSGFSSYGYLKSLPVDYL 918 Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K +G + + A++ SI +A+ + IA+ + K L R+G DY Q Sbjct: 919 KIDGLFVVDIVDDKIDFAMVESINRIAQVMGKKTIAEFVENNEIRKRLKRLGVDYAQGYG 978 Query: 940 VASPLGF 946 +A P Sbjct: 979 IAKPQPL 985 >gi|220910322|ref|YP_002485633.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] gi|219866933|gb|ACL47272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Cyanothece sp. PCC 7425] Length = 877 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 169/576 (29%), Positives = 302/576 (52%), Gaps = 5/576 (0%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + + ER +LA+ G+ D +WDW++V + + + TILG + + Sbjct: 293 LADISERKRTEAALMETKERYALAIQGANDGIWDWNLVNNEIYFSSRWKTILGYSESEVD 352 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + W IH D + + L+ + + E+R+R + ++ W++ R + NS Sbjct: 353 NCLEEWFSRIHPQDLERVKLKLNLHQQGQSSHFEEEYRLRHKNGKYRWVLSRGIAVRNSE 412 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G R G +DI+EQ+ + E ++ +A D LTG+PNR F+DRL ++ + N Sbjct: 413 GKAYRMAGSLSDISEQRLAQEQLMHDALHDPLTGLPNRTLFMDRLRQVIHHARRHRNYNF 472 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ +D+D++K IND LG GD +L+ L R L+ D +ARL G+ F I+L Sbjct: 473 AVLFVDLDRFKVINDSLGHLAGDTLLIELAHRFQIGLRPDDTVARLGGDEFVILLDDLLE 532 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + A ++ + P + + + +ASIG A + L+NA++AMY AK Sbjct: 533 VEESIRIAHRIQTLVQQPFIINGQTVFTSASIGIAPKDTHHHKPEHYLRNADIAMYRAKA 592 Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 GG+ F + + R+ ++ DL A+E EL L Y PI+ L ++IVG EAL++W Sbjct: 593 AGGSRHVLFTSVMHTSALVRLQLETDLRQALERQELRLQYQPILCLNTDQIVGFEALVRW 652 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASK 803 HP+ G I+ F+ +AEE +I I ++L+ R + W Q P+ + +N++SK Sbjct: 653 QHPRDGLIAPGHFITVAEETGLIVPIGEWVLQEACRQMQCWHTQFGQVLPLMVSVNLSSK 712 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L +L + + ++++T P ++KL +ES+++ N E +R L +L++ I L++DDF Sbjct: 713 QLSQPDLLQQVDRMLAETGLRPQQLKLEITESMILDNTEVARQTLLKLKERQIQLSMDDF 772 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL +P D +K + S + E+ ++R+II +A +++ +IA+ I Sbjct: 773 GTGYSSLNYLHRLPIDLLKIDRSFIHEMDSGEESRELVRAIISIAHSLKMQVIAEGIETR 832 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +++L +GC++ Q ++PL L++ F Sbjct: 833 SQLEQLHELGCEFGQGYLFSTPLDPEPAADFLQQAF 868 Score = 42.6 bits (99), Expect = 0.35, Method: Composition-based stats. Identities = 15/146 (10%), Positives = 39/146 (26%), Gaps = 16/146 (10%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + ++ + + + + P +L + Sbjct: 173 VALALEARDRQQAEAELQKTNQQLRNILESLTSGFFSLNETAEFTYINPQAEPLLQHSRA 232 Query: 444 SMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF-RVRAADNQFHWMIIRIRP 501 + G + P + D F ++ + + + R+ W+ I I P Sbjct: 233 ELLGHNLWQFFPALR--DSSFFPYYQEAITDQVTVKFEDYYPRLN------RWLEIHICP 284 Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527 DI+E+K++ Sbjct: 285 FQ------TGVAVYLADISERKRTEA 304 >gi|22298169|ref|NP_681416.1| hypothetical protein tll0627 [Thermosynechococcus elongatus BP-1] gi|22294348|dbj|BAC08178.1| tll0627 [Thermosynechococcus elongatus BP-1] Length = 845 Score = 635 bits (1639), Expect = e-179, Method: Composition-based stats. Identities = 185/710 (26%), Positives = 316/710 (44%), Gaps = 21/710 (2%) Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 +R+ + + A + S I + L+S Y II G Sbjct: 123 LDRYTRALERCSLPDQAVASWGTAFSSSEMSEATEIQLLRLSSFPELSPYPIIELAANGQ 182 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 + + + + RL + +Q + V + V H+L Sbjct: 183 LTYLNPAAIQEFPDLGELDGQHPLLSRLKSWFLQEKRFAVEEINVGDRTYEVTIHLLQES 242 Query: 395 YFSQ--------------GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + + ER +LA + D +WDW I V +P ++G Sbjct: 243 QLIRCYLTDITERKRSELALRISEERYALAAEAANDGLWDWHIGNRSVYYSPRWELLIGE 302 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 GS+ I W +H +D + R + + R EFR+R D + WM R + Sbjct: 303 PPGSLQPTIEEWWRRVHPDDLEQLRQNIKEHLFGSRPCFDCEFRIRHRDGSYRWMRSRGK 362 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + N G R G D+TE E IL +A D +TG+ NR +DRLT + Sbjct: 363 ALRNQKGQPYRMGGSMTDVTEYHLIQEKILHDALHDAMTGLANRVLLIDRLTQAIARRQR 422 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 N V+ +D+D++K IND LG GD +L+ + +R+ + D +ARL G+ F I+ Sbjct: 423 RPNSLFAVLFLDVDRFKVINDSLGHLAGDQLLIGIGQRLRACTRPEDTIARLGGDEFAIL 482 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L ++ + A + + P L EI TASIG A T+ ++L++A+ A Sbjct: 483 LEDLSDPAQAMKVAERILMVLGRPFLLEGHEIFTTASIGIAFPWEDSQTAEDLLRDADTA 542 Query: 681 MYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G E F ++ + ++ +L A E E + Y PI+ L ++VG Sbjct: 543 MYRAKSLGKARYEVFSMTMRAQTIALMQMETELRRAAEREEFLVYYQPIVDLATLKMVGF 602 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFIL 797 E L++W HP+ G IS EFM +AEE +I I+ +++ R + W + I Sbjct: 603 ETLLRWQHPERGIISPGEFMAVAEETGLILPISWWVMAEACRQMQRWAVIFPRSRKLRIG 662 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++ + +L +++++++T + R+ L +E +++ N E + L +R +GI Sbjct: 663 VNLSGRHFQQADLLPNLRSILAETGFPAQRLCLEVTEGILIDNKEVAIATLEEIRAMGIG 722 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIA 915 +++DDFGT S LSYL P DT+K + + ++ S E I+ +I+ +A ++ ++A Sbjct: 723 VSMDDFGTGYSSLSYLHRFPIDTLKIDRTFISALNSEESSATIVHAILMLAHSLRLQVVA 782 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF--PLVKNT 963 + I + L +GC+Y Q A PL + KLL + PLV+ + Sbjct: 783 EGIETREQYRALQALGCNYGQGYFFARPLSARQVEKLLARQSLPPLVRPS 832 >gi|20807551|ref|NP_622722.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter tengcongensis MB4] gi|20516086|gb|AAM24326.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Thermoanaerobacter tengcongensis MB4] Length = 793 Score = 624 bits (1609), Expect = e-176, Method: Composition-based stats. Identities = 150/581 (25%), Positives = 280/581 (48%), Gaps = 5/581 (0%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ + Q+++ + ER L V G+ D +WDWD++ D + I+ Sbjct: 179 LMAREEELRQNLIEIKRQQDELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDII 238 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 GL ++ W+ +IH D L + + + E+R++ D ++ W++ R Sbjct: 239 GLDKEVVNNYYETWIKFIHPRDIKIVINNLRNHLEKKTPFYLCEYRIKTKDGRYIWVLSR 298 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + + G +R G DITE+K+ + AF D LTG+P R+ F+DRL + + Sbjct: 299 GKALWDEEGRAIRIAGSHTDITERKQMESKLKYMAFYDPLTGLPRREVFMDRLKIAMADA 358 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + V +D+D +K IND LG +GD +L + R++ L+ D ++R+ G+ F Sbjct: 359 KRNGK-KLAVFFVDLDNFKTINDSLGHHIGDRLLKKVARKLKACLRESDTVSRVGGDEFV 417 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I+L N A + + PI E+ VT SIG A + ++KNA+ Sbjct: 418 ILLPDIINIDDTNKVANRILELFNQPIKFNNYELYVTISIGIAIYPDHGKNERAIVKNAD 477 Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK G N + F I+ DL A+E + +L Y PI+ ++V Sbjct: 478 IAMYKAKRDGKNSFQYFDSITKKEVEIASTIRRDLRFALEKGQFFLHYQPIVDARTGKVV 537 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 +EAL++W HPK G IS F+ IAEE I +I ++L + + WR+ + Sbjct: 538 SMEALLRWQHPKKGLISPIHFIPIAEETRQIISIGEWVLRTACKQMKEWRNMGYY-GFSV 596 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L + + + ++++ P ++L +E+V++ + L RL+++G+ Sbjct: 597 SVNVSVHQLQQPDFAKVVFDILNEIELEPRFLELEITETVLIEAMDTVVRNLYRLKEMGV 656 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT+ S YL D +K + S ++ E AI+ +I + ++ + A Sbjct: 657 KIIIDDFGTENSSFKYLQKFTVDGLKIDRSFVSEIKVEVNKAIVDAITFLGHRMKLGVTA 716 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + + + L GCD +Q + + PL + ++++++ Sbjct: 717 EGVETKEQLDCLVESGCDKVQGYYFSKPLPPDEAIRMVQKE 757 >gi|158337195|ref|YP_001518370.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] gi|158307436|gb|ABW29053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF domains [Acaryochloris marina MBIC11017] Length = 862 Score = 623 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 163/561 (29%), Positives = 279/561 (49%), Gaps = 4/561 (0%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + Q + ER + A G+ D +WDW + +RV +P ++G + Sbjct: 287 LVDITQRKRAEQILRESEERYAAAARGANDGLWDWHLRSNRVYFSPRWKAMIGYEEDEIS 346 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 WL +H +DRD + L + Q EFR+R + ++ W R + +++ Sbjct: 347 DRCEEWLDRLHPSDRDRLKQELSMHLKGETNHFQSEFRLRHKNGEYRWFRSRGMALRDTD 406 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 R G DITE + E ++ +A D LT +PNR F+DRLT + + Sbjct: 407 QQPYRIAGSQTDITEYHLAREQLVHDALHDALTCLPNRVLFMDRLTQAIKQYQRHPEDQF 466 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 + +D+D++K IND LG +GD +L+ + R+ L+ D +AR+ G+ F I+L + N Sbjct: 467 ATLFLDLDRFKIINDSLGHMIGDRLLIEVGNRLQFCLRDQDTVARIGGDEFVILLNTIQN 526 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + A +++ + ++ EI SIG A + + E+L++A+ AMY AK+ Sbjct: 527 MEHVLQTAERIQQQLKQAFSIEGHEIFTGTSIGIALSSPEYQHAEELLRDADTAMYRAKN 586 Query: 687 RGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N E F S ++ DL A++ E L Y PI+ L + +VGLEAL++W Sbjct: 587 LGKNRYEIFSSSMRSQVLALSQLENDLRRAIDRQEFQLFYQPIVSLDTQNLVGLEALVRW 646 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASK 803 HP+ G I SEF+ +AEE +I + ++L + R + W+ + + +NI+S+ Sbjct: 647 HHPERGLILPSEFVPMAEEAGLIIPLGGWVLAQACRQMQLWQQHYSLATDLQLNVNISSR 706 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + A++ T R+KL +E V+M + L ++ +GI L +DDF Sbjct: 707 QFSQPNFVNDIHAVLEDTNLPCHRLKLEITEGVLMDHASDVADKLDAIKTLGIKLGIDDF 766 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 GT S L+YL P DT+K + S + S+E+ I+R+I+ +A N+ ++A+ + E Sbjct: 767 GTGYSSLNYLNAFPVDTLKIDRSFVGRMSSEEGFEIVRTIVNLAHNLHMDVVAEGVELEE 826 Query: 923 DIKELTRMGCDYIQDSHVASP 943 +ELT+M C+Y Q + P Sbjct: 827 QAEELTQMNCEYAQGYLFSEP 847 >gi|108803341|ref|YP_643278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rubrobacter xylanophilus DSM 9941] gi|108764584|gb|ABG03466.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rubrobacter xylanophilus DSM 9941] Length = 754 Score = 623 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 187/706 (26%), Positives = 319/706 (45%), Gaps = 12/706 (1%) Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA 316 +A L+ + + L R + C+ +L + +A + + Sbjct: 52 GLLAAGVILLTYGGLLLFARRRVGAGERVEAVWTICVGLLLAALLMSAVQPGWLAVLAVT 111 Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL-WMAITKRLDNDIIQPALVGGL 375 ++ ++G + L+ AW+ + + I + R + G L Sbjct: 112 PLISVAVALP---YVRGGDLLRLIFLAWLTVVVMAILSRALPPLSRPPAWFVDAFTAGAL 168 Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++ + Q + ER +LA G D +WDWD+ RDRV + Sbjct: 169 AAATAVVLLLLWQFSTRLNETLARTRAAEERYALAERGVNDGLWDWDLRRDRVYYSSRWK 228 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 +LG + W +H DR + + RR L E+R+R D + WM Sbjct: 229 EMLGWREDEVGEEPDEWFRRVHPQDRKRLLEEVREHLRGRREHLNVEYRIRHRDGSYRWM 288 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + R + + G+ +R G DIT +K++ E +L A D LTG+PNR F++RL L Sbjct: 289 LTRGLAVRDGEGNPVRMAGSQTDITRRKQAEEKLLHEASHDALTGLPNRAFFMERLGEAL 348 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D R V+ ID+D++K IND LG A+GD +LV+ R+ L+ D LARL G+ Sbjct: 349 RRPG--DGDRVAVLFIDLDRFKMINDSLGHAMGDRLLVAAAERLKGCLRPQDTLARLGGD 406 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F ++L ++ A A + + + P L E+ AS+G + E+L+ Sbjct: 407 EFTVLLEGVSSEE-AASVADRLLERLREPFRLDGYELFTAASVGVVLGGRERAGPEELLR 465 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A++AMY AK GG F + + + ++ +L A+E E Y PI+ L Sbjct: 466 DADIAMYRAKALGGGRKGIFEAGMHTRAMELFRLENELRRAIEREEFTAHYQPIVSLKTG 525 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP- 792 I G EAL++W HP+ G I EF+ +AEE +I + L ++ ++SW+ + Sbjct: 526 LISGFEALVRWRHPERGLIRPDEFVPVAEETGLIVPLELSVVREACASLVSWQREFPQHR 585 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 P+ + +N++ L EL E ++ ++ +T ++L +ES +M N + L RLR Sbjct: 586 PLTMSVNLSRNQLARPELPEQVERILLETGLDARSLRLEVTESAIMENVGSAAATLSRLR 645 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIE 910 + I + +DDFG S LS L +P D +K + S + + I+++II +A N+ Sbjct: 646 DMNIRVHIDDFGMGYSSLSVLHQLPIDALKVDRSFVGRMDGANDDVEIVQTIITLAHNLG 705 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++A+ + E + L R+GCDY Q + PL +LL Sbjct: 706 LDVVAEGVEREEHLDRLRRLGCDYAQGFLFSEPLDAAGARRLLSAY 751 >gi|220909032|ref|YP_002484343.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] gi|219865643|gb|ACL45982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7425] Length = 842 Score = 620 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 154/574 (26%), Positives = 282/574 (49%), Gaps = 5/574 (0%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + Q + ER + A G+ D +WDWD+ +++ +P ILG + Sbjct: 252 MVDITQRKLTEQALRESEERYAAAARGANDGLWDWDLRTNQIYFSPRWKLILGWHEDEIG 311 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 W IH DR+ + L + + + E R+ D + W+ R + + + Sbjct: 312 KNPEEWFDRIHHEDRERVKAELHYHLNGSKAHFESEHRLLHRDGSYRWVRSRGLALCDED 371 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 R G DIT + + E IL +A D LTG+PNR LDRL + + + Sbjct: 372 AIPYRIAGSLTDITAYRLAQEQILHDALHDALTGLPNRVLLLDRLAQAIHRGRRRSDYQF 431 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ +D+D++K IND LG GD +LV + +R+ L+ D +ARL G+ F I++ + Sbjct: 432 AVLFLDLDRFKVINDSLGHMAGDRLLVEIAQRLQLCLRSEDTIARLGGDEFAILVEDIQS 491 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + + P++L ++I TASIG A + E+L++A++AMY AK Sbjct: 492 VEAVLQLVEQLHAELNRPLSLDNQDIFTTASIGIAFNSPQTEQPEELLRDADVAMYRAKS 551 Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N E F + ++ ++ +L A+E EL + Y PII+L + + G E L++W Sbjct: 552 LGKNRHEIFSAGMRLEAIAQLQVETELRHALERQELRVFYQPIIQLNEGTLYGFETLVRW 611 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASK 803 +HP+ G + EF+ IAEE +I I+ ++L++ + +W+ Q + I +N + Sbjct: 612 EHPQRGLVLPLEFLPIAEETGLIVPISWWVLQQACEQMQAWQQQFPCSQFLNISVNFTPQ 671 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + + ++++T + P R++L +E++ M + E + +L L+ GI + LDDF Sbjct: 672 HFAQPSFLQKLNRILAETGFPPHRLRLEVTENLFMKSTETTIDILQELQDWGIQIYLDDF 731 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL P +T+K + + +I+++I+ +A + +IA+ + Sbjct: 732 GTGYSSLNYLHRFPINTLKIDRCFIGHLNSNGSHASIVQAIMTLAHVLGLAVIAEGVETV 791 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +L ++ C++ Q + PL I + L + Sbjct: 792 EQLNQLCQLQCEFGQGYLFSLPLSQTQIAEYLAK 825 >gi|158338665|ref|YP_001519842.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] gi|158308906|gb|ABW30523.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative [Acaryochloris marina MBIC11017] Length = 880 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 160/575 (27%), Positives = 296/575 (51%), Gaps = 4/575 (0%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + Q + R + A G+ D +WDWD+ + + + +LG + + Sbjct: 294 LIEITQHRRTEQQLRLSEARYAAAAKGANDGLWDWDLHGNTIYFSDRWKAMLGFSEEEIG 353 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 W IH D+D L + + + + E+R+ ++ ++ W R + N Sbjct: 354 ASPDEWFNRIHPQDQDRVTEDLSAHLRGDTPQFECEYRILHSNGEYLWFKGRGLALRNDQ 413 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 R G D+T + + A D +T +PNR F++RLT ++ + Sbjct: 414 NQAFRIAGSQTDVTAYYSTRAQLEFKAQHDEMTQLPNRVLFMERLTHAFRMAKHQQSRLF 473 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ +D+D++K IND LG VGD +L+ +++R+ + L+ D +AR G+ F I+L + + Sbjct: 474 AVLFLDLDRFKIINDSLGHRVGDQLLIEVSKRLQQCLRKQDTIARFGGDEFAILLDTVED 533 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + A + +++ I+L E E+ +ASIG + E+L++++ AMY AK Sbjct: 534 ADEAIHVAQRILQALKAKISLEEHEVYTSASIGITVSSPDYQAPEELLQDSDTAMYRAKK 593 Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 +G N E F + + + ++ ++ DL A+ N+EL+LVY PI+ L E IVG EAL++W Sbjct: 594 QGKNCFEVFSSGMRAQVNSQLQLETDLQRAISNNELHLVYQPIVDLNTENIVGFEALLRW 653 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASK 803 +HP+ G + SEF+ +AE+ ++ +I+ ++L + + W + + I +NI++ Sbjct: 654 NHPERGLVPPSEFIPVAEDAGLMVSIDWWVLTEACQQMAHWLNIYPGSTELTINVNISAH 713 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L + CE + A+I +T P +KL +E V++ N L L+K+GI L +DDF Sbjct: 714 QFLQSTFCEKVNAIIQETGMKPHHLKLEITEGVILSNAPNISEQLNNLKKLGIHLAIDDF 773 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEI 922 GT S LSYL P D +K + S ++ + +AI+R+I+ + +N+ ++A+ + +I Sbjct: 774 GTGYSSLSYLYAFPLDVLKVDYSFVSRMDQDNGLAIVRTIVNLGQNLNMKVVAEGVETKI 833 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L MGC++ Q + PL S+ +L + Sbjct: 834 QQEYLQEMGCEFAQGYLFSRPLKKESVESILTNKN 868 >gi|163795826|ref|ZP_02189790.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [alpha proteobacterium BAL199] gi|159178859|gb|EDP63395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [alpha proteobacterium BAL199] Length = 829 Score = 616 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 168/577 (29%), Positives = 295/577 (51%), Gaps = 5/577 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V G + + ER +LA G+ D +WDW++ +R+ + +LG A+ Sbjct: 249 VATYSDVTERGKAERALRESEERYALAAAGANDGLWDWNLGSNRIFFSDRWKQMLGYATD 308 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + W IH D +D+ + + E RVR D+ + WM++R + Sbjct: 309 EIEDGAEEWFSRIHPEDVQRVTAQIDAHLNGTATNFESEHRVRHFDDTYRWMLVRGLAVR 368 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + R G D+TE+K++ E + +A D+LTG+ NR FL+R+ L + Sbjct: 369 DGENNAYRIAGSMTDVTERKRAEEQAIHDALHDSLTGLANRTLFLERVRQALARQRRSLS 428 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + V+ +D+D++K +N+ LG GDD++++ RR+ + LKF D +ARL G+ F I+L Sbjct: 429 AQFAVIYLDLDRFKVVNESLGHVHGDDLIIAAARRLEQNLKFGDTVARLGGDEFAIMLED 488 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + + ++K+++ P L +E+ TAS+G A T + + ++L+++ELAMY Sbjct: 489 VHDKEEGTALSEMLQKALSTPFVLGGKEVFTTASMGIAHSTDNYVRPEDILRDSELAMYR 548 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G +F + + ++ DL A++ +E+ L + PI+ L D I G EAL Sbjct: 549 AKELGKARSVAFDPAMRGTTVTPLDVETDLRRALDRNEMILNFQPIVSLADGRIRGFEAL 608 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINI 800 +W H + G+I SEF+ IAEE MI + ++L ++ W + P I +N+ Sbjct: 609 SRWRHKERGDIPPSEFIPIAEETGMIVELGQWVLRNACAQMVEWNKEFPDQGPFEISVNL 668 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + +L + + + T S +KL +ES +M N +RS +L L+ + I + + Sbjct: 669 SGRQFTQLDLVKMVTNSLDGTGLDASFLKLEITESALMENAQRSAQMLRHLKDLHIKVCV 728 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL P DT+K + S + R I+R+I +A+N+ +IA+ + Sbjct: 729 DDFGTGYSSLSYLHKFPIDTLKIDKSFVQDMGRNRHNLEIVRTIAVLAQNLRLDVIAEGV 788 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +L +GC Y Q + PL +++ LL E Sbjct: 789 ETPEQLAQLRAIGCGYAQGFLFSRPLTADNVRHLLAE 825 >gi|148656467|ref|YP_001276672.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus sp. RS-1] gi|148568577|gb|ABQ90722.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Roseiflexus sp. RS-1] Length = 921 Score = 615 bits (1586), Expect = e-173, Method: Composition-based stats. Identities = 157/586 (26%), Positives = 286/586 (48%), Gaps = 6/586 (1%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + +++ V + + + ER +LA G+ D +WDWD+V ++ P +L Sbjct: 337 GLSGSVAIVRDVTEAKRAEEALRASEERYALAAQGANDGLWDWDLVSGKIYFAPRWKAML 396 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + W +H +DR+ L + + E+R+ D + WM+ R Sbjct: 397 GYDDTDIGTSPDEWFRRLHPDDRERVEWRLLAHTRRLITSFELEYRILHRDGNYRWMLCR 456 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + +G R +G DIT +K++ E + A D LTG+PNR F+DRL+ L + Sbjct: 457 GMAVWDEHGRATRMVGSQTDITGRKQAEEQLAYGALHDALTGLPNRTLFMDRLSLALKRA 516 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + +L V+ +D+D++K IND LG A GD++L+++ RR+ +L+ D +ARL G+ F Sbjct: 517 QREKHL-FAVLFLDLDRFKTINDSLGHAAGDELLIAVARRLESVLRPGDTVARLGGDEFA 575 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L N + + +++ P+++ + TASIG A E+ ++A+ Sbjct: 576 VMLDRLNAPEEAEWIVERIHQALQAPLSVRGHTVYTTASIGLALGNEGYERPEELARDAD 635 Query: 679 LAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMY AK + F R ++ DL A+E +EL + Y PI+ L +V Sbjct: 636 TAMYQAKMQRRARHVVFDPDMRRKAVSHFQLENDLRSAIERNELRVHYQPIVALNGRRVV 695 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIF 795 EAL +W HP+ G IS +F+ ++EE+ +I I ++L + + WR + ++ Sbjct: 696 AFEALARWQHPQHGLISPDQFIPLSEEIGLINTIGHWVLRDVCHQVREWRRRRPRHFDMW 755 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+++ L +L + I+ P+ IK+ +E+ + + E + L LR +G Sbjct: 756 VNVNLSAHQLAQPDLVAQIAHAIADAGIPPNAIKIELTENTFVTHREIAIAQLNELRSLG 815 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913 + + +DDFG S L YL P DT+K + + G + I+++II +A ++ T+ Sbjct: 816 VGVCIDDFGAGYSSLGYLSQFPVDTLKIDRVFIARLGMMREHYEIVKAIITLAHSLGMTV 875 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 +A+ + E L+ + C+Y Q L + + L R L Sbjct: 876 VAEGVETEEQATMLSALRCEYAQGWLFGRALPADQVEAFLDSRSSL 921 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 16/149 (10%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH- 446 Q A + + + GD V D + P ILG S+ Sbjct: 215 QRAEALKRSEEALRQQTNLLRAILDSMGDAVVVTDTDGHLIHHNPAAVQILGDRLASLLP 274 Query: 447 -------GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ-FHWMIIR 498 + ++ +D R + + E R+ A D W+ I Sbjct: 275 GSSSAPVAQSPDGRSWLTPHDLPFARAL------HGESVDAAEVRLPATDCHPEQWLSIT 328 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527 RP+ +++G + + I D+TE K++ E Sbjct: 329 ARPLRDTDG-LSGSVAIVRDVTEAKRAEE 356 >gi|156743079|ref|YP_001433208.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus castenholzii DSM 13941] gi|156234407|gb|ABU59190.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Roseiflexus castenholzii DSM 13941] Length = 919 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 158/585 (27%), Positives = 285/585 (48%), Gaps = 6/585 (1%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + +++ V + + ER +LA G+ D +WDWD+V DR+ + Sbjct: 336 EGLSGSVAIVRDVTEAKRAEAALRASEERYALAAQGANDGLWDWDLVNDRIYFASRWKAM 395 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 LG + W +H +DR+ L + + E+R+ D + WM+ Sbjct: 396 LGYGDDEIGTSPDEWFSRVHPDDRERVELRLLAHTRRLIASFELEYRILHRDGAYRWMLC 455 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 R + +++G R +G DIT++K++ E + D LTG+PNR F+DRL+ L Sbjct: 456 RGIAVWDASGRATRMVGSQTDITDRKRAEERLEYGILHDTLTGLPNRTLFMDRLSLALRR 515 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S + V+ +D+D++K IND LG A GD++LV + RR+ +L+ D +ARL G+ F Sbjct: 516 SQR-ERSLFAVLFLDLDRFKTINDSLGHAAGDELLVVVARRLEGVLRPGDTVARLGGDEF 574 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L + A +++++ P+ + R + TASIG + E+ ++A Sbjct: 575 AVMLDRLDAPEDAEWIAERIQQALRAPLTIGGRTVYTTASIGLVLSNQGYERAEEIARDA 634 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY AK F R ++ DL A+E+ EL + Y PI+ L I Sbjct: 635 DTAMYQAKMGQRARYVVFDPDMRRKALSHFQLENDLRSAIEHGELCVYYQPIVALTSGRI 694 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPI 794 V +EAL +W HP++G I+ +F+ +AEE+ +I AI ++L+ R + WR + Sbjct: 695 VAVEALARWQHPQYGLIAPDQFIALAEEVGLINAIGQWVLQEACRQLRVWRTYYPHYADM 754 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 ++ +N+++ L +L + I++ +KL +E+ + + + + L LR + Sbjct: 755 WVNVNLSAHQLAQPDLVAQVADTIARNDVPARALKLEITENTFITHRDVAAAQLNDLRSL 814 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETT 912 G+ + +DDFGT S LSYL P DT+K + + G+ + I+++II +A ++ T Sbjct: 815 GVGVCIDDFGTGYSSLSYLSQFPVDTLKIDRVFINRLGAAREHREIVKAIITLAHSLGMT 874 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++A+ + EL + C+Y Q + ++L Sbjct: 875 VVAEGVETLDQANELRALRCEYAQGWLFGCTAPPEQMEQMLAAHQ 919 Score = 58.0 bits (139), Expect = 8e-06, Method: Composition-based stats. Identities = 52/364 (14%), Positives = 102/364 (28%), Gaps = 49/364 (13%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 AL L V Q A + + GD V D + Sbjct: 197 ALNLMLEQRVAERTMLAEQRAEALKRSEASLRQQTNLLLAVLDSMGDAVVVTDAAGRLIL 256 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQ-YEFRVRA 487 +LG S+ + + R + L R + E + A Sbjct: 257 YNSAAVHMLGDRLMSLLPSAPDTQVAQSPDGRSSLTPRDLPFARALRGESVNAAEVHLPA 316 Query: 488 AD-NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D W+ I RP+ ++ G + + I D+TE K++ + ++ Sbjct: 317 GDAGAEQWLSITARPLRDTEG-LSGSVAIVRDVTEAKRAEAAL---------------RA 360 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 +R L +D L + +ND + R +L + Sbjct: 361 SEER--YALAAQGANDGLW---------DWDLVNDR----------IYFASRWKAMLGYG 399 Query: 607 DILARLSGNR-FGIILISENNSLKIADFAI--AMRKSIAMPINLLEREITVTASI--GFA 661 D S + F + + +++ A + S + +L R+ + G A Sbjct: 400 DDEIGTSPDEWFSRVHPDDRERVELRLLAHTRRLIASFELEYRILHRDGAYRWMLCRGIA 459 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHR----GGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717 W +S + + ++ G H + + + L + Sbjct: 460 VWDASGRATRMVGSQTDITDRKRAEERLEYGILHDTLTGLPNRTLFMDRLSLALRRSQRE 519 Query: 718 SELY 721 L+ Sbjct: 520 RSLF 523 >gi|78044640|ref|YP_360725.1| sensory box protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996755|gb|ABB15654.1| sensory box/GGDEF domain/EAL domain protein [Carboxydothermus hydrogenoformans Z-2901] Length = 769 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 152/581 (26%), Positives = 276/581 (47%), Gaps = 5/581 (0%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 ++ V Q+++ + ER L V G+ D +WDWD+ D + + Sbjct: 178 ELMAREEEVRQNLIEIQRQQDELKKSEERYRLVVEGASDGLWDWDLETDTAYISERWRDL 237 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 +G ++ W+ +IH D L + + + E+R++ D ++ W++ Sbjct: 238 IGFDKEVINNYCETWIKFIHPRDVKAVINNLRNHLEKKTPFYLCEYRIKTKDGKYIWILS 297 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 R + + N G +R G DIT++K+ + AF D LT +P R FL+RL + Sbjct: 298 RGKALWNKEGKAIRMAGSHTDITQRKQMESKLEYMAFHDPLTNLPRRDVFLERLKVAMAD 357 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + + V +D+D +K IND LG GD +L + + + + ++ D ++R+ G+ F Sbjct: 358 ARRNGK-KLAVFFVDLDNFKIINDSLGHHTGDRLLKKIAKELTKCVRETDTISRVGGDEF 416 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L N+ A + + PI L E+ VT SIG A + + +LKNA Sbjct: 417 IILLPDVNSIEDTDKVAKRILELFDQPIKLNNYELPVTISIGIAIYPDHGKSERAILKNA 476 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK +G N + F ++ +K DL LA+E ++ L Y P+I L +I Sbjct: 477 DIAMYTAKRKGKNGFQYFDIAMKSEVEFANTVKRDLRLALEKNQFILYYQPLIDLKTGKI 536 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +EAL++W HPK G IS F+ IAEE I +I ++L R + W Sbjct: 537 ASMEALLRWQHPKKGMISPFHFIPIAEETRQIISIGEWVLRTACRQMKEWLGM-GYSGFS 595 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ L + + ++ + P ++L +E+V++ E L L+K G Sbjct: 596 VSVNVSVHQLEQPNFAKVVCDILKEIELEPRYLELEITETVLIEAVETVVENLYHLKKAG 655 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTII 914 + + +DDFGT+ S Y+ D +K + S + G AI+ +II + ++ + Sbjct: 656 VKIIIDDFGTENSSFRYMQKFTVDGLKIDRSFVNGIKIDVNKAIIDAIILLGHRLKLPVT 715 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L GCD +Q + + PL + ++ L+++ Sbjct: 716 AEGVETREQLECLIESGCDKVQGFYFSKPLPPDEVIHLVQK 756 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 3/131 (2%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E S + ++ W + V + +A I + I Sbjct: 25 LKQKEEFLSKILENEQLLIVVWTLESGVVWFNRYTQNLFDIAIEEQLEKID--VSLIIPE 82 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + ++ G R R E + + + +++ S+ G + D+ Sbjct: 83 NLISYLKEQLDDTGERSFRYIDEKPMVLKNGREIYIMWHNSIFSDEEGH-KYIVSTGIDV 141 Query: 520 TEQKKSLEGIL 530 TE KK+ + Sbjct: 142 TELKKTEKRFE 152 >gi|296132516|ref|YP_003639763.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola sp. JR] gi|296031094|gb|ADG81862.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola potens JR] Length = 1349 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 149/591 (25%), Positives = 274/591 (46%), Gaps = 8/591 (1%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 L LI V++ + Q I+ + ER + + GD V D P Sbjct: 759 VSLTLIEGGGTVCVVRDITERKQAEQAIWEEKERAQVTLHSIGDAVITTDGQGIITYLNP 818 Query: 433 DIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADN 490 + G + G I+ + + L + Sbjct: 819 VAEVLTGWTNDEACGRPLLEVFNIINETTGQVVENPVTKCLREGNIVGLANHTVLIHRSG 878 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + + P+ N G+I+ + + +D++E++ +E + A+ D LT IPNR F DR Sbjct: 879 RRYAIEDSAAPIKNREGEIIGVVLVFHDVSEKRNMIEQLTHQAYHDPLTDIPNRVLFNDR 938 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L + + N VM +D+D++K +ND+LG ++GD +L + +++ L+ D +A Sbjct: 939 LNVALAHAKRN-NEMLAVMFLDLDRFKLVNDMLGHSIGDRLLQEVAKKLSICLRKGDTIA 997 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ F ++L + + A A + K+ P+ L E +TASIG A + S + Sbjct: 998 RLGGDEFTLLLPQIKSEKEAAKIAQKILKAFQKPVTLSGHEFYITASIGVALYPSDGEKA 1057 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPII 728 ++KNA+ AMY AK +G N + + + + R+ ++ L A+E EL + Y P++ Sbjct: 1058 EILMKNADTAMYRAKEQGRNTYQLYTPAMNKKIVERMAMENSLRHALERRELVVYYQPLV 1117 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 + I G+EALI+W H + G + +EF+ +AEE +I I ++L +W+D Sbjct: 1118 CIRTGRITGMEALIRWRHKELGLVPPAEFIPLAEETGLIIPIGEWVLRTACAQNKAWQDA 1177 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 P+ + +N+++ L + + +T P ++L +ES+ M + + + +L Sbjct: 1178 -GYMPVRVTVNLSAYQFQHQNLVNTVAKTLKQTGLHPQYLELEITESIAMQDVDYTVDVL 1236 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 +LR++G+ + +DDFGT S L YL P +T+K + S + AI+ +II + Sbjct: 1237 RKLREMGVQIAIDDFGTGYSSLRYLKRFPINTLKIDRSFVRDIACDPNDAAIVSTIIVLC 1296 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +N+ +IA+ + E + L C +Q + P+ +LLK Sbjct: 1297 RNMNLKVIAEGVETEEQLNFLKNQHCYEMQGYFFSQPVPEKEFEELLKRYN 1347 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 9/148 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-S 442 T V+ + +QS A+ S D + + + + A I G A Sbjct: 648 ITGAIEVVRDITERKKTEELLRQQSAAMRASMDGMAILNTNGEYIYMNEAHARIYGYANP 707 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G W +RD F + + Y++G ++ E R AD + + + Sbjct: 708 AQLIGK--TWHILYDEEERDRFEKEVLPAL-YKQGYIRTEAVGRKADGSLFPQEVSLTLI 764 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530 + + DITE+K++ + I Sbjct: 765 EGG-----GTVCVVRDITERKQAEQAIW 787 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 8/238 (3%) Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 L + P + + T + + + + + A + + Sbjct: 443 LAIEIPFAPYLKEMLHNTTDYLAGMLGFTLVAFLLGSLLSKHLTGPLAKLASVTTDLPCR 502 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 ++ + + + LV+ + + Q+ L + + V G G Sbjct: 503 ISNREEIKWPYSPFTEMNSLVVNFRSMAGKLQQNFLELQQARMKAEEEKNKIEAIVAGIG 562 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 D + D + ++G G RD V + Sbjct: 563 DGISIQDTNYRVIFQNRIQRELMG----EAVGQYCYQAY----EGRDQVCPGCPVAVSLQ 614 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 G +Q R ++ + P+ ++ G I I + DITE+KK+ E + + Sbjct: 615 EGTIQTVERCPELKKGSLYIEVTSAPLKDAAGKITGAIEVVRDITERKKTEELLRQQS 672 >gi|13476242|ref|NP_107812.1| hypothetical protein mll7513 [Mesorhizobium loti MAFF303099] gi|14027003|dbj|BAB53957.1| mll7513 [Mesorhizobium loti MAFF303099] Length = 554 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 236/553 (42%), Positives = 374/553 (67%), Gaps = 2/553 (0%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + GSGD VWDWD++RDRV T PD++ LGLA S+ G RNWLP +H +DRD FRT LD Sbjct: 1 MAGSGDTVWDWDVLRDRVVTKPDVSIQLGLAPNSLGGAARNWLPVLHADDRDTFRTTLDV 60 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + +RRGR+ FR+R AD +HW +R RP+ S+G+++R +G D+TEQKKS E +L Sbjct: 61 VLEHRRGRVAQNFRLRGADGHYHWFALRARPVIGSDGEVIRCVGTMVDVTEQKKSEERLL 120 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 +A DNLTG+PNR+ F++RL I+ ++ T++ +RPTV VIDID++K++ND LGI+ GD Sbjct: 121 HDAVHDNLTGLPNRELFMNRLEAIISIARTEEKVRPTVFVIDIDRFKQVNDGLGISAGDT 180 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L+++ RR+ LLK D L+R +G++F ++L+SE + +IA A A++ +I PI +R Sbjct: 181 ILLTIARRLHRLLKPKDSLSRFAGDQFALMLLSEQDPARIAGVADAIKHAINNPITFAKR 240 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIK 708 EI +TASIG +WTS++ ++ +M+K+AELAM+ AK GG+ +E FR + +DR+ + Sbjct: 241 EIVLTASIGLITWTSAQTSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFE 300 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 DL A+E E L Y PI+RL D + G EAL++WDHP+ G I ++F+ +AE +I Sbjct: 301 SDLRRAIERREFTLAYQPIVRLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIV 360 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 + LF +++ A D+ W+ Q P+ + +N++S+ L+ +L ++++I++ P Sbjct: 361 QLGLFAMQQAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRRDLVSDVRSVIARANLKPRCF 420 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +ES+VM NPE++ +L +L+++GI L+LDDFGT S L+YL PFDT+K + S + Sbjct: 421 RLELTESLVMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFV 480 Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 +T KR +L+S++ MA + +++A+ I E D EL +MGC+Y+Q +P+ + Sbjct: 481 DDNTPKRAVLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMFGAPMPGDQ 540 Query: 949 ILKLLKERFPLVK 961 +LK LKE++PL + Sbjct: 541 VLKTLKEQYPLTQ 553 >gi|317127772|ref|YP_004094054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] gi|315472720|gb|ADU29323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] Length = 1016 Score = 608 bits (1569), Expect = e-171, Method: Composition-based stats. Identities = 156/610 (25%), Positives = 285/610 (46%), Gaps = 17/610 (2%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 + LV + + FTV L Q I S E+ + + D + Sbjct: 409 WGFIAIVGQVDELVLISAADITQVSFTVSAASLERDELFQQIESIAEQLEIVSSTTNDGI 468 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 WDWDI +++ I S+ ++L +H D +N Y Sbjct: 469 WDWDINTNQIHWNVRSLDIFRSVDESLPTDSESFLNLVHPEDCENVIESFKRH-QYEGSS 527 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 L+ EFR++ + W+ + + N NG+++R IG +I+E+K+ + I+ AF D L Sbjct: 528 LKMEFRIQGGKEEEMWVYLTGDSIRNENGEVIRIIGSITNISEKKQQEKQIMHLAFHDGL 587 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+PNR+ DRL + + + + +++ID+D++K IND LG GD+++ + Sbjct: 588 TGLPNRRLLRDRLEIAMAQADRY-HFKLGILMIDLDRFKVINDTLGHHAGDELIQKVAEV 646 Query: 599 I----------GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 + + +ARL G+ F I+L ++ A + + P + Sbjct: 647 LELTIRSSDTISRGKQENATVARLGGDEFIILLTHITEVTELQTVANRIIEKFKEPFFIQ 706 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVM 706 ++ +ASIG + + + + A++AMY AK G N +E + +R Sbjct: 707 NHDVFTSASIGISVYPDNGRDFDSLTGCADIAMYRAKENGKNQMEIYSSEINTLTMERFT 766 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A+E E L Y P L + E++G+EAL++W+ G +S EF+ +AEE + Sbjct: 767 MENQLRKALEREEFVLHYQPQFNLKNTEVIGIEALLRWNSSDRGIVSPMEFIPLAEETGL 826 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I L++L+ R W DQ + P I + +NI+++ L + + +++++ T Sbjct: 827 IIPIGLWVLKEACRQNKYWIDQGHRPKI-VSVNISARQLQQKDFVQTVKSILEVTQLPTQ 885 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 + L +ES + N + S +L L ++GI + +DDFGT S L+ L +P +K + S Sbjct: 886 YLCLEITESTAIKNIDISMNMLKELGELGIKIAIDDFGTGYSSLAMLKQLPISNIKIDKS 945 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + AI+++II MA ++E T+ A+ + E L + C+Y+Q + PL Sbjct: 946 FIRDMDVDKDDAAIVKAIIAMAHSLELTVTAEGVETEDQKNILLQEKCNYLQGYLYSKPL 1005 Query: 945 GFNSILKLLK 954 L+ ++ Sbjct: 1006 PAEECLRFVQ 1015 >gi|83648396|ref|YP_436831.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83636439|gb|ABC32406.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 966 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 177/954 (18%), Positives = 365/954 (38%), Gaps = 33/954 (3%) Query: 16 LILVLFLLWMVSPSFAIEP-INISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 + + L M + A + ++ + R + + ++ A I+ + Sbjct: 23 VAAMALLCLMSLHAQADDVNVHAGEFPPTI---PQVRHFAAEIGSSELEQARQSLRIAPK 79 Query: 75 IEVS--ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISV-- 130 I S + W F L N S E + + + L F LG + Sbjct: 80 ISASQINFGFTGKEHWFAFGLLNRSSDSRELFLNLGNPLLDNIELFLFRLGESQPEYAIS 139 Query: 131 TPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWEPNFYKDTVNSF 188 + ++ +R N + VF + + ++++ + + LWEP+ + + Sbjct: 140 SGAQRPFHERPINHPNFVFPLQLAGDTGYEVVIKVDATSSIQVPMSLWEPSQFTAYNHKE 199 Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT-FAMAWVVLGYISIDFGFLSKLVNLPS 247 G ++GV ++A + + ++ R + A+ L S+ + Sbjct: 200 ASLSGALLGVIGIMAAYNLMLFLFLRDKGYLYFTAALGGYALAEASLCGLAYAYFWPDNP 259 Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 ++L +F +L + + ++F+ Sbjct: 260 TWNAKSLVFFINLCLAALALFTRSFLSLPERLPAIARGFAHIAGWCLLCALLAFFASNTA 319 Query: 308 AS-IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-ND 365 ++ + +A ++ +Y + A A+ + I L N Sbjct: 320 MLKLSLLNIAITPMFGYLTGLYLLRSNFRPARYFTLAYTFLVFASIVFCAGKVGLLPLNS 379 Query: 366 IIQPALVGGLVLIVILIGFTVIQHV----LATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + A G+V +V+ + + + A + + E+ S + ++ Sbjct: 380 LTGHATQFGVVGMVLALSLALADRLKGEKSAREFAQLQATENLEKYRAIYENSLEGMFRL 439 Query: 422 DIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D + P A +LG + R+ I + ++ R + + Sbjct: 440 DAKGALMACNPAFAQLLGACNEKELVSNTRDLSGMIPLQ--EDARRLFFLSLKQYGHVFG 497 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 +E R + D + W I R + G G DITE+K++ + + A D LTG Sbjct: 498 FEARCQRLDGKQFWATIFARQVVTPGG-AGFVEGSIVDITEKKENEQQLHYLARHDPLTG 556 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 + NR F RL L S + L+ ++ +D+D++K +ND G A GD++L + Sbjct: 557 LLNRTEFEYRLNNALVRS-REQGLQHALLFMDLDQFKIVNDTSGHAAGDELLRQIAVMFR 615 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIG 659 + L+ D LARL G+ FGI+L K ++ A +R ++ L E+ +V SIG Sbjct: 616 QHLRERDSLARLGGDEFGILLERCG-IEKASEIAHRLRNEVSEFRFALKEKVFSVGVSIG 674 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS----SFRSDRVMIKEDLCLAV 715 T++ + E+ A+ A Y AK G N + R + + L A+ Sbjct: 675 IVPITAATPSIEEIFSLADTACYAAKDAGRNRIIVHNEKTGEIIRRQSEMQVVTALQEAI 734 Query: 716 ENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 + ++L L I L E E L++ + F+ AE +I++++ ++ Sbjct: 735 KQNQLVLYKQNIGALKPELRGERYEILVRLKQGAD-ILPPGAFLPAAERYNIIRSLDRWV 793 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 ++ + + + Q + IN++S+ + D+E + + +K ++ +E Sbjct: 794 IDAYFKWLHARPGQLERLS-QVNINLSSQTINDSEFADFLLTAFTKYSIPLDKVCFEITE 852 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892 S + + + L+ +R GI LDDFG+ S SYL +P +++K +GS + Sbjct: 853 SSAISSLVETTALVQNMRAKGIKFALDDFGSGFSSYSYLKSLPVNSLKIDGSFVRDILSD 912 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 +A++RSI +A + ++A+ + E ++ L + D++Q H+ P+ Sbjct: 913 PVDLAMVRSITEVAHIMGLNVVAEFVENEETVERLKSLDVDFVQGYHIHKPMPL 966 >gi|148657976|ref|YP_001278181.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus sp. RS-1] gi|148570086|gb|ABQ92231.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Roseiflexus sp. RS-1] Length = 892 Score = 606 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 164/582 (28%), Positives = 297/582 (51%), Gaps = 5/582 (0%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I+ + + + + +Q + + ER +L V +GD VW+W++ +T + +LG Sbjct: 309 IIGSVAIFRDITVSFQMAQALRASEERYTLTVQATGDGVWEWELRTGIMTFSRRWKEMLG 368 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + W +H +DRD L +++ ++E+R+ D + WM R Sbjct: 369 FQDQEIGNLPSEWFNRVHPDDRDGLDVRLTAYLRRLITSFEHEYRILHRDGAYRWMRCRG 428 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + +++G+ +G DIT++K + + + NAF D+LTG+ NR F+DRL ++ + Sbjct: 429 IAIWDADGNAAHIVGSQTDITDRKLAEQRLWYNAFHDSLTGLANRARFMDRLGHVIARAR 488 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + V+++D+D++K IND LG VGD +L+++ RR+ + L+ D LA L G+ F + Sbjct: 489 RSASPPYAVLILDLDRFKLINDSLGHLVGDQLLIAIARRLEQSLRPGDTLAHLGGDEFAV 548 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAE 678 +L + + A + P +L E E+ +ASIG A + + S+ML++A+ Sbjct: 549 LLEDLSEPHAAVNVAERILHLFEEPFHLNEHEVFSSASIGIALSDNLRYHSPSDMLRDAD 608 Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AM+HAK G F + R+ I+ DL +E +E ++VY PI+ L + V Sbjct: 609 TAMHHAKMEGRARYAVFHPTMHDRARPRLQIEIDLRRGIERNEFFVVYQPIVELSTQRTV 668 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP+ G ++ +EF+ IAEE +I I +L R + +W+ + + + Sbjct: 669 GFEALLRWRHPQRGIVTPAEFIAIAEETGLIVPIGQMVLREACRQLSAWKQRHPERTLAM 728 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN++ + + D +L ALI + ++L +E+ ++ + + + +L +LR +G+ Sbjct: 729 NINLSPRQIADPDLVHRTAALIDEYRLDADALRLEITETAIIEHGDAAGRVLQQLRALGV 788 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914 + +DDFGT S LSYL P T+K + S ++ + I+RSII +A+++ +I Sbjct: 789 QICIDDFGTGYSSLSYLHRFPIATIKIDRSFVSQIHRSHENTEIVRSIISLARSLGMAVI 848 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 A+ E + L M C Y Q A L +L Sbjct: 849 AEGTETEEQLLRLRSMSCAYGQGWLFAHALEPAEATAMLDRE 890 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 3/141 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + ++ + + + D V D + V P T+ G Sbjct: 181 LETRIAEYSATVEDTALALRQQTITLHAILESLSDAVVVIDREGNLVHANPVAHTLFGDR 240 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-EFRVRAAD-NQFHWMIIRI 499 + + + L + R + EF + + D + + Sbjct: 241 LLDVTPQATAPA-LLDTDGVPCATDQLPLAIALRGVEVDSSEFLLASVDPDAVRRIRATA 299 Query: 500 RPMSNSNGDILRYIGIANDIT 520 RP+ +SNGDI+ + I DIT Sbjct: 300 RPLRDSNGDIIGSVAIFRDIT 320 >gi|172036947|ref|YP_001803448.1| hypothetical protein cce_2032 [Cyanothece sp. ATCC 51142] gi|171698401|gb|ACB51382.1| hypothetical protein cce_2032 [Cyanothece sp. ATCC 51142] Length = 1250 Score = 606 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 163/581 (28%), Positives = 282/581 (48%), Gaps = 8/581 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILG 439 L +I + Q + +R + D+VW +D + P LG Sbjct: 657 LGSLGMITDISQRKKMEQALSESEQRLEGILNSIQDVVWSFDANFSKLIYINPVAQMTLG 716 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + ++ WL IH D++ + + G +Y++R+ +++ W+ R+ Sbjct: 717 FSLEKLYDNPHLWLQLIHPEDQELVQ--YHRQIVKEIGYTEYKYRIIRNNDKIRWLSSRM 774 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 R + N +++R GI +DITEQK++ E + NA D LT +PNR F+DRL ++ Sbjct: 775 RCVYNDKNNLIRIDGIDSDITEQKRAEEQLQYNATHDPLTNLPNRILFMDRLEHAIERQK 834 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 V+ +D+D++K IND LG A+GD +L + R+ L+ D LARL G+ F I Sbjct: 835 RHPKFIFAVLFLDLDEFKVINDSLGHAIGDQLLQEIALRLQNGLRSDDTLARLGGDEFTI 894 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + A + + P L ++ I + SIG A +S ++E+L++A+ Sbjct: 895 LLEDIEDIKDAIKIAKRIHLDLTQPFILEDQNIFINTSIGIALNSSGYQEAAEILRDADT 954 Query: 680 AMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G F R+ ++ DL + + E L Y PII L + G Sbjct: 955 AMYRAKADGKACYAIFDHKMHERAVSRLQLETDLRIGINKQEFCLYYQPIISLKTGHLTG 1014 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFI 796 EALI+W HP+ IS +F+ IAEE +I I + L+ + + W++Q + + Sbjct: 1015 FEALIRWYHPQKNLISPGQFIPIAEETGLIIPIGEWTLKEACQQLKKWQNQFPHYSHLKV 1074 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++SK L L + + ++ T +KL +E+++M N + + +L ++++ I Sbjct: 1075 AVNLSSKQLKYTNLIDTIDQILRDTQLDSKNLKLEITETLLMENLQAATEILLKIQERDI 1134 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914 + LDDFGT S LSYL P +T+K + S + I+R+I+ +A + II Sbjct: 1135 EICLDDFGTGYSSLSYLHRFPVNTLKIDRSFVMRMEPDNENAEIVRAIVSLAHILGLDII 1194 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + E+ + +L R+GC+ Q A PL + + L+ Sbjct: 1195 AEGVETELQLAQLRRLGCEQGQGYLFAKPLPASEVENWLRN 1235 Score = 94.6 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 4/142 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ + + + E+ V + + +W D +A +LG M Sbjct: 537 SLRDITENYEAQEALLESEEKYRQIVETATEGIWIIDQDNKTTFVNQQMAKMLGYEMNEM 596 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 N ++ D + + ++FR R D Q W I+ P+ + Sbjct: 597 MDK--NLFDFVDFEDNIRVQEKIQQRRQGIAETHDFKFRCR--DGQELWTIVSTNPLFDH 652 Query: 506 NGDILRYIGIANDITEQKKSLE 527 G+ L +G+ DI+++KK + Sbjct: 653 QGNYLGSLGMITDISQRKKMEQ 674 Score = 83.1 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 2/139 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + V + V + E+ L S + ++ + + ++G ++ Sbjct: 302 YAVARDVTEWKKIELALRKSEEKFRLLFDKSPTAMGLANMEGKLINVNEALCQLVGYSAE 361 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + H +D + + + + + E R Q + + + + Sbjct: 362 ELLTKGCA--DITHPDDLEKEKKLFNQLLSGTINSFSLEKRYITKSKQIIYGLHQATLIR 419 Query: 504 NSNGDILRYIGIANDITEQ 522 + G+ L +G DIT+Q Sbjct: 420 DIEGNPLHLLGQTIDITQQ 438 Score = 61.9 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 7/95 (7%) Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 + LG + + +L ++H +D+ + L++ ++ E R R D Sbjct: 226 INRVFSRTLGYSVAELKSKP--FLEFVHPDDQLSTVAELENLTQGKQNC-HCENRYRCQD 282 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + W+ + +A D+TE KK Sbjct: 283 GSYRWLAWTSVANIEEK----KIYAVARDVTEWKK 313 Score = 42.6 bits (99), Expect = 0.34, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 23/129 (17%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + ER + D + + + G ++ + H Sbjct: 444 ALQESEERLGRIISTISDGLLVVNTQGKVRFINDAGVKLFGRSAKQLMD---------HP 494 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 L ++ + +R+ ++ G+ Y+ D Sbjct: 495 LGLPLGNDQLTEIF------------IQQPQGKLIIAQMRVADITW-QGE-SAYLLSLRD 540 Query: 519 ITEQKKSLE 527 ITE ++ E Sbjct: 541 ITENYEAQE 549 >gi|289579240|ref|YP_003477867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermoanaerobacter italicus Ab9] gi|289528953|gb|ADD03305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermoanaerobacter italicus Ab9] Length = 792 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 149/572 (26%), Positives = 281/572 (49%), Gaps = 5/572 (0%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q+++ + + ER L V G+ D +WDWD++ D + I+GL ++ Sbjct: 190 QNLIEIQRQQEELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDIIGLDKEVVNN 249 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 W +IH D L + + + E+R++ D ++ W++ R + + N G Sbjct: 250 YRETWTKFIHPRDVKTVINNLRNHLEKKTPFYLCEYRIKTKDGRYIWVLSRGKALWNEEG 309 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 +R G DITE+K+ + AF D LT +P R+ F+DRL + + + + Sbjct: 310 RAIRMAGSHTDITERKQMESKLKHMAFYDPLTDLPRREVFMDRLKIAMANAKRNGK-KLA 368 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V +D+D +K IND LG +GD +L + +++ L+ D ++R+ G+ F I+L + Sbjct: 369 VFFLDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEFVILLPDIIDI 428 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + + PI E+ VT SIG A + ++KNA++AMY AK Sbjct: 429 EDTNKVANRILELFNQPIKFNNHELYVTISIGIAIYPDHGKNEKAIVKNADIAMYRAKRD 488 Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F + + V I+ DL +A+EN + +L Y P++ + ++ +EAL++W Sbjct: 489 GKNGFQYFDSITRKEVEVANTIRRDLRVALENGQFFLCYQPLVDIKTGKVASMEALLRWQ 548 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HPK G IS F+ IAEE I +I +ML R + W + + +N++ L Sbjct: 549 HPKKGLISPIHFIPIAEETRQIISIGEWMLRTACRQMKEWLNM-GYSGFSVSVNVSVHQL 607 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + + ++++ P ++L +E+V++ + L RL+++G+ + +DDFGT Sbjct: 608 QQPDFAKVVLDILNEIDLEPRFLELEITETVLIEAMDTVARNLYRLKEVGVKIIIDDFGT 667 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 + S Y+ D +K + S ++ E AI+ +II + ++ + A+ + + + Sbjct: 668 ENSSFKYIQKFMVDGLKIDRSFVSNIKVEVNKAIVDAIIFLGHRMKLGVTAEGVETKEQL 727 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L GCD +Q + + PL + ++++++ Sbjct: 728 DYLVESGCDKVQGYYFSKPLPPDEAIRMVQKE 759 >gi|297545418|ref|YP_003677720.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843193|gb|ADH61709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 792 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 149/572 (26%), Positives = 281/572 (49%), Gaps = 5/572 (0%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q+++ + + ER L V G+ D +WDWD++ D + I+GL ++ Sbjct: 190 QNLIEIQRQQEELKRSEERYRLVVEGASDGLWDWDLITDTAYISKRWKDIIGLDKEVVNN 249 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 W +IH D L + + + E+R++ D ++ W++ R + + N G Sbjct: 250 YRETWTKFIHPRDVKTVINNLRNHLEKKTPFYLCEYRIKTKDGRYIWVLSRGKALWNEEG 309 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 +R G DITE+K+ + AF D LT +P R+ F+DRL + + + + Sbjct: 310 RAIRMAGSHTDITERKQMESKLKHMAFYDPLTDLPRREVFMDRLKIAMANAKRNGK-KLA 368 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V +D+D +K IND LG +GD +L + +++ L+ D ++R+ G+ F I+L + Sbjct: 369 VFFLDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEFVILLPDIIDI 428 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + + PI E+ VT SIG A + ++KNA++AMY AK Sbjct: 429 EDTNKVANRILELFNQPIKFNNHELYVTISIGIAIYPDHGKNEKAIVKNADIAMYRAKRD 488 Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F + + V I+ DL +A+EN + +L Y P++ + ++ +EAL++W Sbjct: 489 GKNGFQYFDSITRKEVEVANTIRRDLRVALENGQFFLCYQPLVDIKTGKVASMEALLRWQ 548 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HPK G IS F+ IAEE I +I +ML R + W + + +N++ L Sbjct: 549 HPKKGLISPIHFIPIAEETRQIISIGEWMLRTACRQMKEWLNM-GYSGFSVSVNVSVHQL 607 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + + ++++ P ++L +E+V++ + L RL+++G+ + +DDFGT Sbjct: 608 QQPDFAKVVLDILNEIDLEPRFLELEITETVLIEAMDTVARNLYRLKEVGVKIIIDDFGT 667 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 + S Y+ D +K + S ++ E AI+ +II + ++ + A+ + + + Sbjct: 668 ENSSFKYIQKFMVDGLKIDRSFVSNIKVEVNKAIVDAIIFLGHRMKLGVTAEGVETKEQL 727 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L GCD +Q + + PL + ++++++ Sbjct: 728 DYLVESGCDKVQGYYFSKPLPPDEAIRMVQKE 759 >gi|254559422|ref|YP_003066517.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254266700|emb|CAX22483.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with GAF and two PAS/PAC sensor domains [Methylobacterium extorquens DM4] Length = 1028 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 165/592 (27%), Positives = 300/592 (50%), Gaps = 11/592 (1%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 L ++ + + T + SQ + + ER +LA+ D ++DW++ +V + Sbjct: 424 LRVVGLNLDITDRRTTEDALAQSQTHLRASEERLALALDSGNDGLFDWNVTTGKVWYSDR 483 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 T+LG G + I +W +H +D RT+L G E R+R+ ++ Sbjct: 484 WQTMLGYKPGEIEPHILSWERLVHPDDLHQARTLLTEHFGELSATYSSEHRLRSKSGEYT 543 Query: 494 WMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 W++ R R + + G LR +G + DITE+K S + I A D LTG+PNR F + L Sbjct: 544 WVLGRGRVVARDEQGAPLRMVGTSIDITERKASEQRIAYMARHDVLTGLPNRTVFHEHLE 603 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 L + ++ +D+D++K IND+LG GD++L + R+ ++ D++ RL Sbjct: 604 QRLAEVRR-GRGQAALLCLDLDRFKSINDMLGHPAGDELLCQIATRLRATVRGGDVVVRL 662 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F II+ +++ + + A + ++ P++L +TV SIG A ++ TS Sbjct: 663 GGDEFAIIVSHLDHARQASVLAQRVIDAVGQPLDLGGHLVTVGISIGIAFAPTNGDTSET 722 Query: 673 MLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 + KNA+LA+Y AK N + + + R+ ++ ++ A+ L Y P++RL Sbjct: 723 LFKNADLALYRAKASARNTYCFYEAGMDAAVEARMQLEFEMREAITCGSFALHYQPVLRL 782 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 D IVG EAL++W HPK G I+ EF+ AEE +I + + L+ R+ SW D Sbjct: 783 ADHRIVGFEALMRWPHPKRGMIAPDEFIPSAEETGLIVPLGSWALQEACREAASWPDH-- 840 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + I +N+++ L +G+ + ++ + +P R+ L +ESV++ + E L R Sbjct: 841 ---LRIAVNVSAVQFQQPGLEQGVMSALAASGLAPHRLVLEVTESVLVQDAEAVIACLHR 897 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNI 909 L+ +G+ + LDDFGT S LSYL PFD +K + S ++ AI+R+++ +A + Sbjct: 898 LKSLGVRIALDDFGTGYSSLSYLRRFPFDRIKIDRSFISEIGDPGAAAIVRAVVGIAMQL 957 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 T+ A+ + ++++ GC +Q V+ PL + ++ + + + Sbjct: 958 GATVTAEGVETTAQLEQVRSEGCMEVQGYLVSRPLPADRAIEFISSSASIER 1009 Score = 86.2 bits (212), Expect = 3e-14, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 17/181 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + LA +G VW D+ D V +P A + G Sbjct: 291 LGTALDIEDIVTARSTLEHTTDLLRLAQEAAGAGVWQRDLDDDVVRHSPMSARMHGFLGE 350 Query: 444 -SMHG----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD--NQFHWMI 496 + G I W +H +D R + + + EFRVR + + + W++ Sbjct: 351 PDLSGWIAVSIAEWAARVHPDDLAQVRAMHAGALRN-GTTYKVEFRVRQSADMDDYRWLM 409 Query: 497 IRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 R + + +G LR +G+ DIT+++ + + A + T + ++ +RL L Sbjct: 410 GFGRVIRDETSGRPLRVVGLNLDITDRRTTED---ALAQ--SQTHL---RASEERLALAL 461 Query: 556 D 556 D Sbjct: 462 D 462 Score = 68.1 bits (165), Expect = 8e-09, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 16/287 (5%) Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA 316 + AL S I F+ + +W I G + V + + Sbjct: 39 TAAALFSVPIAFVSLVDSDRQWFKAKCGIAAEGTPRDVAFCAYAILSDDVLV-VENAAVD 97 Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA---ITKRLDNDIIQPALVG 373 + ++ Y A L++ I + I ++ + +Q Sbjct: 98 PRFAINPLVVGDLAVRFYAGAPLIL--RSGIRVGTICIFDTKPCSFSEMQRTQLQDLARI 155 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVW-DWDIVRDRVTTT 431 + I + G I+ LA S+ + + E R +VW + T Sbjct: 156 VVAHIELHQGRLTIEAALAERTRSEALIAANEARYRALADALPQMVWVMTSADGSAIYTN 215 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 T G S+ H D + V + E R+R D Sbjct: 216 ERFRTYYG----SIGPQREERTSRNHPADTERMAEEWQRAVTHE-HTYAVEGRLRRHDGT 270 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + W + + P+ NG ++ ++G A DI + + + D L Sbjct: 271 YRWHKLVMVPVR-QNGTVVEWLGTALDIEDIVTARSTLEH--TTDLL 314 >gi|254478017|ref|ZP_05091401.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653] gi|214036021|gb|EEB76711.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653] Length = 793 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 147/581 (25%), Positives = 285/581 (49%), Gaps = 5/581 (0%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ + Q+++ + ER L V G+ D +WDWD++ D + I+ Sbjct: 179 LMAREEELRQNLIEIQRQQDELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDIV 238 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 GL ++ W +IH D + L + + + E+R++ + ++ W++ R Sbjct: 239 GLDKEVVNNYYETWTKFIHPRDVKTVISNLRNHLEKKTPFYLCEYRIKTKEGRYIWVLSR 298 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + + G +R G DITE+K+ + AF D LTG+P R+ F+DRL + + Sbjct: 299 GKALWDEEGRAIRMAGSHTDITERKQMESKLKYMAFYDPLTGLPRREVFMDRLKIAMADA 358 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + V +D+D +K IND LG +GD +L + +++ L+ D ++R+ G+ F Sbjct: 359 KRNGK-KLAVFFVDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEFV 417 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I+L + N A + + PI E+ VT SIG A + ++KNA+ Sbjct: 418 ILLPNIINIDDTNKVANRILELFNQPIKFNNHELYVTISIGIAIYPDHGKNERAIVKNAD 477 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK G N + F + + V I+ DL LA+E + +L Y P++ + ++ Sbjct: 478 IAMYKAKRDGKNSFQYFDSITRKEVEVASTIRRDLRLALEKGQFFLCYQPLVDIRTGKVT 537 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 +EAL++W HPK G I+ F+ IAEE I +I ++L + + W + + Sbjct: 538 SMEALVRWQHPKKGLINPIHFIPIAEETRQIISIGEWVLRTACKQMKEWLNMGYY-GFSV 596 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L + + + ++++ P ++L +E+V++ + L RL+++G+ Sbjct: 597 SVNVSVHQLQQPDFAKVVFDILNEIELEPRFLELEITETVLIEAMDTVVRNLYRLKEMGV 656 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT+ S YL D +K + S ++ E AI+ +II + ++ + A Sbjct: 657 KIIIDDFGTENSSFKYLQKFTVDGLKIDRSFVSEIKVEVNKAIVDAIIFLGHRMKLGVTA 716 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + + + L GCD +Q + + PL + ++++++ Sbjct: 717 EGVETKEQLDYLVESGCDKVQGYYFSKPLPPDEAIRMVQKE 757 >gi|82617851|gb|ABB84845.1| Multidomain signal-transduction protein [uncultured delta proteobacterium DeepAnt-32C6] Length = 955 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 158/568 (27%), Positives = 285/568 (50%), Gaps = 5/568 (0%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 V A + + ER LAV GS D +WDW + V + +LG + I Sbjct: 360 VHALEQAEEALRQSKERYELAVRGSNDGIWDWSLDSGVVHYSTRWKQMLGCELTDVKETI 419 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 W IH +D + +L+ + + E R+R D ++ WM+ R + + +G Sbjct: 420 PEWFDRIHPDDLVRVKRLLNKHLSGELPHFEAEHRMRHRDGKYSWMLTRGEAVRHPDGTP 479 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 R G +DIT +K + + + +A+ D L G+ NR F++RL + D+ V+ Sbjct: 480 YRIAGSQSDITARKIAEDQLRHDAYHDVLCGLANRALFMERLERAIKRLNRRDDYLYAVL 539 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG GD +L+ L+ R+ ++ D LARL G+ F ++L + L Sbjct: 540 FVDLDRFKNINDGLGHLAGDSLLIELSTRLSGYVRETDTLARLGGDEFAVLLEDICSPLD 599 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A ++++ P L +E+ VTASIG A S + E+L++A+ A+++AK G Sbjct: 600 AQRAAQRFQEALTTPFQLKGQEVFVTASIGIALGNRSYSGAEEVLRDADTALFYAKDGGR 659 Query: 690 NHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 E+F+ + R+ ++ DL +V+ + +LV+HPI+ + EI G EAL++W H Sbjct: 660 ARHETFQRGMHLRAQARLQLENDLRRSVDRGDFHLVFHPIVDVESCEIAGFEALVRWMHH 719 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLL 806 G +S +F+ + EE +I + ++E I WR + P I IN++ + L Sbjct: 720 DRGQVSPEDFIGVCEETGLIIPLGKLVIEGACEAIAEWRQRHPELSPPTISINVSPRQLS 779 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 L + ++ + + +P + L +ES ++ + + S +L L+ +G+ L +DDFGT Sbjct: 780 AEGLVDDVRHALERWKLAPQLLTLEITESALLDDIDSSIQVLKDLKDLGVGLQIDDFGTG 839 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL +P D +K + S + + I+ +II +A +++ + A+ + + Sbjct: 840 YSSLSYLSQLPIDALKIDRSFLRDMTSDTNQFNIVSAIITLAHSLDLEVTAEGVEHVAQL 899 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952 EL R+ C++ Q + +P+ + L Sbjct: 900 DELRRLRCNHAQGYYFTTPISSDQACAL 927 >gi|156743249|ref|YP_001433378.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus castenholzii DSM 13941] gi|156234577|gb|ABU59360.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Roseiflexus castenholzii DSM 13941] Length = 900 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 165/566 (29%), Positives = 281/566 (49%), Gaps = 5/566 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + V T ++ + + ER +LA + D +WDWD+ ++ + +G Sbjct: 323 VAVFRDVTITRQAAEALRASEERYALAAQAANDGLWDWDLTTGKIYFSQRWKASIGFQDH 382 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + W +H +DR+ L + + +YE+R+R D + WM R + Sbjct: 383 EIGNDPSEWFDRVHPDDREGLEVRLVAHLHRLISGFEYEYRMRHHDGAYRWMSCRGIAVW 442 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 N+ G +R +G DI +K + +L A D+LTG+ NR F+DRL ++ + + Sbjct: 443 NAGGQAVRIVGSQTDINARKLVEQRLLHEALHDSLTGLANRSCFMDRLEHVVARTRRGAS 502 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V+ +D+D++K IND LG VGD +L+++ RR+ L+ D LARL G+ F ++L Sbjct: 503 SPFAVLFLDLDRFKLINDSLGHVVGDQLLIAIARRLERCLRPGDTLARLGGDEFAVLLED 562 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMY 682 + A + + + P +L E+ +ASIG A S + +++L++A+ AMY Sbjct: 563 LSEPQAALTVAERILRLLEEPFHLAGHEVFSSASIGIALNDSTRYHSPADVLRDADTAMY 622 Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK G + F + R+ I+ DL VE +E ++VY PI+ L ++ VG EA Sbjct: 623 HAKMEGRSRYAVFHSAMHDRARHRLQIETDLRRGVERNEFFVVYQPIVELNTQQTVGFEA 682 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP G IS +EF+ +AEE +I I +L R + WR + I + IN+ Sbjct: 683 LLRWRHPHRGIISPTEFIDVAEETGLIVPIGQMVLREACRQLSEWRQRHPARTITMHINL 742 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + + D L + AL++ + L +E+ ++ + + + L LR +G + + Sbjct: 743 SPRQIADPHLVDDTIALLNAYHLDAGSLHLEITETAIIEHGDIASRALMHLRSLGAQICI 802 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918 DDFG S LSYL P T+K + S ++ + I+R+II +A ++ T+IA+ Sbjct: 803 DDFGAGYSSLSYLHRFPIGTIKIDRSFISQIHHSHENAEIVRTIIALAHSLGMTVIAEGA 862 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPL 944 E + L M C Y Q A L Sbjct: 863 ETEEQLARLRSMSCPYGQGWLFARAL 888 Score = 64.6 bits (156), Expect = 8e-08, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + L + + V + A + + Q + GD + D + Sbjct: 179 VEAELRRLNATLEERVAERSAAAEQSAAALRQQMLTQQSILDSIGDAIVVIDGDGRLLHV 238 Query: 431 TPDIATILGLASGSMHGPIRNWLPYI--------HINDRDNFRTILDSFVGYRRGRLQYE 482 P + G + + + + + E Sbjct: 239 NPAARDLFGDRVVDLTPQATARASVLLLADDTSCPPDTLPLAVALRGEALDG------AE 292 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 F + + D+ W+ + RP+ + +G I + + D+T +++ E Sbjct: 293 FLLASPDSAKRWLSVTARPLRDLDGAISGAVAVFRDVTITRQAAE 337 >gi|253996788|ref|YP_003048852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253983467|gb|ACT48325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 651 Score = 602 bits (1552), Expect = e-169, Method: Composition-based stats. Identities = 162/624 (25%), Positives = 288/624 (46%), Gaps = 10/624 (1%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY- 395 + L + IF L+ I+ + I+ + + L+ +++ + L Sbjct: 21 GIYLAFGLLWIFATDSALFSLISSYEEFSILNTYKGVAFIFVTALLLYSLFRRTLKKQQS 80 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 Q + + ER A+ GSGD VWDWDI D V + + I G A + Sbjct: 81 IEQSLQASEERWKFALEGSGDGVWDWDIPSDHVFRSARWSEIYGYAENEIIATAVAGREL 140 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIG 514 +H +D + + ++ EFR+R D + W + R + +++G LR IG Sbjct: 141 VHPDDLAILISDVQNYFAGNSNVYISEFRLRCKDGSWKWTLARGMTVSKSADGKPLRMIG 200 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 DIT +K+S + A D LTG+PNR FLDR + + + T+M +D+D Sbjct: 201 THTDITNRKRSEAQVTHLAHYDQLTGLPNRVLFLDRFKQDIKKAQRTGQI-VTLMFLDLD 259 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 K+K++ND LG +GD +L + RR+ ++ D +AR+ G+ F IIL N+ + I A Sbjct: 260 KFKEVNDSLGHDIGDMLLKDVARRLENCVRDSDTVARMGGDEFTIILNDINSQVNIERIA 319 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + MP +L + I V+ SIG +++ +LKNA+ AMY AK +G N + Sbjct: 320 QDILNQLTMPFHLGDEVIHVSTSIGISNYPKDDTEVELLLKNADQAMYVAKEQGRNRYQY 379 Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + R+ + DL A+ +++ + Y PI+ L I EALI+W HP G + Sbjct: 380 FTPVMQEEALKRMRLISDLWGALNDNQFRVYYQPIVELATGAIFKAEALIRWQHPTRGLV 439 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELC 811 ++F+ +AE+ +I I ++ +A ++ W+ P + + +N + ++ C Sbjct: 440 GPNDFIPVAEDTGLIVDIGDWLFNEVASQMVKWKQHY--PNLQVSVNKSPVQFRSVHDNC 497 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + S + +E +++ + L R+ G+ + +DDFGT S L+ Sbjct: 498 SNWIERLEQLGLSGENFIVEITEGLLLDARDSVVSQLNAFREAGMKIAIDDFGTGYSSLA 557 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL D VK + S + T ++ +II M+ + +IA+ + + L Sbjct: 558 YLRKFDIDFVKIDRSFTSNITPNSSDMVLCEAIIEMSHKLGMKVIAEGVETDEQRDLLRN 617 Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953 CD+ Q + P+ + +LL Sbjct: 618 ADCDFAQGYLYSKPITVDQFEQLL 641 >gi|257062218|ref|YP_003140106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256592384|gb|ACV03271.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 1143 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 175/579 (30%), Positives = 286/579 (49%), Gaps = 8/579 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441 +I + Q ++ +R + D++W D + + P I + G Sbjct: 560 TLGLITDITKRKRTEQALYDSEKRLEGILNSLQDVIWSADPKTRQSLYLNPAIQLVYGRP 619 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 WL +H D++ L + +G + +R+ D + W+ R R Sbjct: 620 MEDFFRDPHLWLCMVHPEDQELVSHHLK--LLEDKGSTEVHYRIIRPDGETRWLHSRSRL 677 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + G LR GI +DITE+K++ E + NA D LT +PNR F+DRL L+ Sbjct: 678 VYDEQGKSLRIDGINSDITERKQAEEQLQYNATHDTLTQLPNRLLFMDRLEHALERRRRY 737 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + V+ +D+D++K IND LG A+GD++L + RR+ + L+ D LARL G+ F I+L Sbjct: 738 SDPLFAVLFLDLDEFKVINDSLGHALGDELLREIARRLQKSLRADDTLARLGGDEFTILL 797 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 ++ A + K + P NL +EI SIG A +SE+L++A+ AM Sbjct: 798 EEIHDVKDAIKIAERIHKDLTRPFNLEGQEIFTNTSIGIALSNGEYEAASEILRDADTAM 857 Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G F R+ ++ DL A+E E + Y PII L + + G E Sbjct: 858 YRAKAGGKACYAIFDQQMHASAVSRLQLETDLRRAIERQEFLVYYQPIISLQHDTLTGFE 917 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILI 798 ALI+W HP+ G + + F+ IAEE +I I ++LE+ A+ + W+ Q + + + Sbjct: 918 ALIRWQHPQQGLVPPARFIPIAEETGLIVPIGEWILEQAAQQLKIWQTQYRNYESLKMSV 977 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++SK L D L + ++SKT + +K+ +ES++M N + + +L LR+ I + Sbjct: 978 NLSSKQLRDASLLGTIDRILSKTEIDNNALKVEITESILMENVQVAADVLIALRERNIEI 1037 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916 LDDFGT S LSYL P +T+K + S + I+R+I+ +A + IIA+ Sbjct: 1038 CLDDFGTGYSSLSYLHRFPVNTLKIDRSFVMRMRPNDENSEIVRAIVSLAHILGMEIIAE 1097 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I E+ + +L +GC+ Q A PL + + LLK Sbjct: 1098 GIETELQLAQLKWLGCEQGQGYFFAKPLATSEVEALLKN 1136 Score = 81.2 bits (199), Expect = 8e-13, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 12/163 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++++ + +Q + E+ V + + +W D ++ ILG Sbjct: 436 LISLRNITDSYQANQKLAESEEKYRKIVETTNEGIWISDHHNKITFVNHQMSEILGYTVD 495 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 M G + L +I G ++ ++R D W I+ + Sbjct: 496 KMMG--MSLLTFIDAAQLSLVEKSGQKTEQSLPGT--HDLKLRRQDGSELWAIVSTNALF 551 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDN---LTGIPN 543 N GD + +G+ DIT++K++ A D+ L GI N Sbjct: 552 NPEGDYMGTLGLITDITKRKRTE-----QALYDSEKRLEGILN 589 Score = 77.7 bits (190), Expect = 9e-12, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 T P ILG +S + ++ +IH +DR L + + + +E R R Sbjct: 253 TLNPVFERILGYSSRELLAQP--FIEFIHPDDRSTSLAELANLRQGK-ETIHFENRYRCR 309 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 D + W+ P +A DITE+KK Sbjct: 310 DGSYRWLSWTSAPYMEEK----LIYAVARDITEEKK 341 Score = 65.7 bits (159), Expect = 4e-08, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 2/133 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + + + ++ V ++G S + Sbjct: 101 HQELKRVNPHFQNIFNQAKVAIALVNLQGKFVQVNQAFCDLIGYTSQELI--KLQLSKIT 158 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H +R + L+ + E R D W + + M + +I I Sbjct: 159 HPEERLSDSQWLNQLLKNSCEAFSREKRYVKKDGSIIWGQVTVSVMKDQAKKPQYFIVII 218 Query: 517 NDITEQKKSLEGI 529 N I++++++ Sbjct: 219 NAISDRQETERHR 231 Score = 40.7 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 5/68 (7%), Positives = 17/68 (25%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + V + + + ER V D + ++ + + + Sbjct: 328 LIYAVARDITEEKKIEIALKDSEERFRQIVTTISDGLIVVNLEGNIRFVNLAAQELFVRS 387 Query: 442 SGSMHGPI 449 + Sbjct: 388 ETELLEHP 395 >gi|89519310|gb|ABD75787.1| sensory box/GGDEF family protein [uncultured bacterium] Length = 874 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 151/583 (25%), Positives = 275/583 (47%), Gaps = 16/583 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 T + + + + ER + + + D V +D P + + G Sbjct: 295 VTSCEDITERKQAEEALRKSEERYRIVLESAPDPVVVYDTEGKVAYFNPAFSRVFGWTLD 354 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G ++LP + + I + + + + D + + I Sbjct: 355 ESIGRNIDFLPV---ENVPENKLIFEKINCGKTLSGIETYCL-TKDGKKVGVNISGAGFF 410 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS----- 558 +++ + I DITE+KK+ E I A+ D LTG+ NR+SF RL L S Sbjct: 411 DNHDKLQGSIITLQDITERKKTEEEIKFLAYHDVLTGLLNRKSFYTRLEDELIRSYSYDG 470 Query: 559 --ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + + +D+D++K +ND LG VGD++L + R+ L+ D + RL G+ Sbjct: 471 DRRRIKGHKWALFFLDVDRFKYVNDTLGHDVGDELLKVVAVRLKNCLRKSDYIFRLGGDE 530 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F IIL + +A A +RK+IA P + + E+ +T SIG + + ++KN Sbjct: 531 FTIILNDLTDDTDMAKVAQKIRKAIARPCRIKDHELYITVSIGISIYPDDGDDVETLVKN 590 Query: 677 AELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 A++AMY AK G ++ +R+M++ +L A+++ +L + Y P++ +I Sbjct: 591 ADIAMYAAKEENQGYRFFIEEMNRKTLERMMLENNLRNALQHDQLIIYYQPLVD-STNQI 649 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG+EAL++W HP+ G IS S+F+ +AEE +I I ++L + W + + Sbjct: 650 VGMEALLRWHHPELGLISPSQFIPLAEETGLIVPIGKWVLRCACQQARKWHEM-GYTRFY 708 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ + + +L E ++ ++ T P +KL +ES +M +PE++ + LR G Sbjct: 709 VAVNLSVRQFREPDLVETIEQILEATDLPPDCLKLEVTESGIMEHPEQAIAKMKMLRAKG 768 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913 I ++DDFGT S LSYL P DT+K + S + + + I+++II MA+N+ Sbjct: 769 IHFSIDDFGTGYSSLSYLKRFPIDTLKIDRSFVIDSTTNKDDQEIIKTIIAMARNLGMDT 828 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +A+ + + L GC +Q + P+ +L+ R Sbjct: 829 VAEGVEAKEQQDFLIHHGCHMMQGYYFGRPMPAEKFEDMLQTR 871 Score = 72.3 bits (176), Expect = 4e-10, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 6/151 (3%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 + ++ + +I+ +L + + AV + D+ R + P A Sbjct: 165 VELMNMNEHLIEELLEEIDERKRAEKHLRQLKQAVETMQLGITITDLDRKIIYMNPAGAE 224 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + G + G + + R + +G ++ +R D + Sbjct: 225 MHGYQVEELLGQDVSMF--VPPEHRKPLTL---ERIKEWKGLIRESVNIR-KDGTTFLVW 278 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + N+ G+ + DITE+K++ E Sbjct: 279 LMSEIVKNAKGEPFAIVTSCEDITERKQAEE 309 >gi|218249132|ref|YP_002374503.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218169610|gb|ACK68347.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 1143 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 175/579 (30%), Positives = 286/579 (49%), Gaps = 8/579 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441 +I + Q ++ +R + D++W D + + P I + G Sbjct: 560 TLGLITDITKRKRTEQALYDSEKRLEGILNSLQDVIWSADPKTRQSLYLNPAIQLVYGRP 619 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 WL +H D++ L + +G + +R+ D + W+ R R Sbjct: 620 MEDFFRDPHLWLCMVHPEDQELVSHHLK--LLEDKGSTEVHYRIIRPDGETRWLHSRSRL 677 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + G LR GI +DITE+K++ E + NA D LT +PNR F+DRL L+ Sbjct: 678 VYDEQGKSLRIDGINSDITERKQAEEQLQYNATHDTLTQLPNRLLFMDRLEHALERRRRY 737 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + V+ +D+D++K IND LG A+GD++L + RR+ + L+ D LARL G+ F I+L Sbjct: 738 SDPLFAVLFLDLDEFKVINDSLGHALGDELLREIARRLQKSLRADDTLARLGGDEFTILL 797 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 ++ A + K + P NL +EI SIG A +SE+L++A+ AM Sbjct: 798 EEIHDVKDAIKIAERIHKDLTRPFNLEGQEIFTNTSIGIALSNGEYEAASEILRDADTAM 857 Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G F R+ ++ DL A+E E + Y PII L + + G E Sbjct: 858 YRAKAGGKACYAIFDQQMHASAVSRLQLETDLRRAIERQEFLVYYQPIISLQHDTLTGFE 917 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILI 798 ALI+W HP+ G + + F+ IAEE +I I ++LE+ A+ + W+ Q + + + Sbjct: 918 ALIRWQHPQQGLVPPARFIPIAEETGLIVPIGEWILEQAAQQLKIWQTQYRNYESLKMSV 977 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++SK L D L + ++SKT + +K+ +ES++M N + + +L LR+ I + Sbjct: 978 NLSSKQLRDASLLGTIDRILSKTEIDNNALKVEITESILMENVQVAADVLIALRERNIEI 1037 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916 LDDFGT S LSYL P +T+K + S + I+R+I+ +A + IIA+ Sbjct: 1038 CLDDFGTGYSSLSYLHRFPVNTLKIDRSFVMRMRPNDENSEIVRAIVSLAHILGMEIIAE 1097 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I E+ + +L +GC+ Q A PL + + LLK Sbjct: 1098 GIETELQLAQLKWIGCEQGQGYFFAKPLATSEVEALLKN 1136 Score = 81.2 bits (199), Expect = 8e-13, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 12/163 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++++ + +Q + E+ V + + +W D ++ ILG Sbjct: 436 LISLRNITDSYQANQKLAESEEKYRKIVETTNEGIWISDHHNKITFVNHQMSEILGYTVD 495 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 M G + L +I G ++ ++R D W I+ + Sbjct: 496 KMMG--MSLLTFIDAAQLSLVEKSGQKTEQSLPGT--HDLKLRRQDGSELWAIVSTNALF 551 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDN---LTGIPN 543 N GD + +G+ DIT++K++ A D+ L GI N Sbjct: 552 NPEGDYMGTLGLITDITKRKRTE-----QALYDSEKRLEGILN 589 Score = 77.7 bits (190), Expect = 9e-12, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 T P ILG +S + ++ +IH +DR L + + + +E R R Sbjct: 253 TLNPVFERILGYSSRELLAQP--FIEFIHPDDRSTSLAELANLRQGK-ETIHFENRYRCR 309 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 D + W+ P +A DITE+KK Sbjct: 310 DGSYRWLSWTSAPYMEEK----LIYAVARDITEEKK 341 Score = 65.7 bits (159), Expect = 4e-08, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 2/133 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + + + ++ V ++G S + Sbjct: 101 HQELKRVNPHFQNIFNQAKVAIALVNLQGKFVQVNQAFCDLIGYTSQELI--KLQLSKIT 158 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H +R + L+ + E R D W + + M + +I I Sbjct: 159 HPEERLSDSQWLNQLLKNSCEAFSREKRYVKKDGSIIWGQVTVSVMKDQAKKPQYFIVII 218 Query: 517 NDITEQKKSLEGI 529 N I++++++ Sbjct: 219 NAISDRQETERHR 231 Score = 40.7 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 5/68 (7%), Positives = 17/68 (25%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + V + + + ER V D + ++ + + + Sbjct: 328 LIYAVARDITEEKKIEIALKDSEERFRQIVTTISDGLIVVNLEGNIRFVNLAAQELFVRS 387 Query: 442 SGSMHGPI 449 + Sbjct: 388 ETELLEHP 395 >gi|209966703|ref|YP_002299618.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] gi|209960169|gb|ACJ00806.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] Length = 979 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 154/604 (25%), Positives = 271/604 (44%), Gaps = 8/604 (1%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIV--ILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 W I R ++ G + + V+Q + Q + ER LAV Sbjct: 366 TWSEIQGRTGRNVTFSMAFGVSQMRLGDRRTAICVVQDITRRKQAEQALRDSEERLKLAV 425 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + V+D D +P+ +LG + +H +DR ++ + Sbjct: 426 RATRSGVFDVDYANGIFWWSPEFIEMLGYEGSPPGQADLLFREILHPDDRPAALAQIERY 485 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + + G +R+R D W+ R + + + G +R G D+T++K+ E ++ Sbjct: 486 LAGKSGDYHAFYRLRHRDGSLIWIEARGQAIRDDRGRPVRITGTMTDVTDRKRFEEQLMY 545 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 + D LTG+PNR DRL D + N V+++D+D++K +ND LG VGD + Sbjct: 546 VSTHDPLTGLPNRTLLQDRLQHAADQAERKGN-SVAVLLLDLDRFKLVNDSLGHQVGDKL 604 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 L ++++R+ ++ D + RL + F II A A + ++ P L ++ Sbjct: 605 LRAISQRLASSVRPADTIGRLGADEFLIIAEDLTEPQMAARVAETVLAGLSQPFGLDGQQ 664 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKE 709 + +T SIG + +L++A+ AM+ AK GGN F R+ ++ Sbjct: 665 LFITCSIGITLFPGDATDIGALLRDADTAMHTAKSAGGNGYRFFTPEMNEAAVARLSLEH 724 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L A++ + L Y P L + VG+EAL++W HP+ G I S F+ +AEE MI A Sbjct: 725 ALREAIDQGQFELHYQPKASLETMQTVGVEALLRWRHPEMGMIPPSTFIPVAEETGMILA 784 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I ++L I W P+ + +N++ + + + + +Q+L+ + P ++ Sbjct: 785 IGDWVLRAALEQINRWERAGL-EPLPVAVNVSVRQITSSHFADRIQSLLDEYGVRPDLLE 843 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +E+ +M N L LR GI + +DDFGT S LSYL +P T+K + S ++ Sbjct: 844 LEITETAMMSNMAFIADGLAELRGRGIRIAVDDFGTGYSSLSYLRRLPITTLKVDRSFVS 903 Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 S AI +II M + + T++A+ I + + L R C Q + P+ Sbjct: 904 EAPSNADTGAIAATIIAMGRQLGLTVVAEGIETQEQLDFLRRHRCHEAQGFLIGFPVPAA 963 Query: 948 SILK 951 + Sbjct: 964 ELEA 967 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 9/152 (5%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + ++ + R S + D + D T + G A+ + G Sbjct: 273 RSLVERRRAEAALRERETRLSGIMDNVADGIITLDEDLRIETMNRAALELFGHAAADVVG 332 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNS 505 ++ I D L + + + E ++ + + Sbjct: 333 KP--FVTLIDEGDWTRVAMALMACLRQSGDGRRRETWSEIQGRTGRNVTFSMAFGVSQMR 390 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 GD I + DIT +K++ A +D+ Sbjct: 391 LGDRRTAICVVQDITRRKQAE-----QALRDS 417 >gi|326390990|ref|ZP_08212539.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermoanaerobacter ethanolicus JW 200] gi|325992935|gb|EGD51378.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermoanaerobacter ethanolicus JW 200] Length = 769 Score = 598 bits (1543), Expect = e-168, Method: Composition-based stats. Identities = 149/582 (25%), Positives = 283/582 (48%), Gaps = 5/582 (0%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 ++ + Q+++ + + ER L V G+ D +WDWD++ D + I Sbjct: 177 ELMAREEELRQNLIEIQRQQEELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDI 236 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 +G + W +IH D L + + + E+R++ D ++ W++ Sbjct: 237 IGFDKEVISNYRETWTKFIHPRDVKTVINNLRNHLEKKTPFYLCEYRIKTKDGRYIWILS 296 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 R + + + +G +R G DITE+K+ + AF D LTG+P R+ F+DRL + Sbjct: 297 RGKALWDEDGRAIRMAGSHTDITERKQMESKLKYMAFYDPLTGLPRREIFMDRLKIAMAD 356 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + + V +D+D +K IND LG +GD +L + +++ L+ D ++R+ G+ F Sbjct: 357 AKRNGK-KLAVFFVDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEF 415 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L N A + + PI E+ VT SIG A + ++KNA Sbjct: 416 VILLPDIINMDDTNKVANRILELFNQPIKFNNHELHVTISIGIAIYPDHGKNERVIVKNA 475 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK G N + F + + V I+ DL LA+E + +L Y P++ + ++ Sbjct: 476 DIAMYRAKRDGKNGFQYFDSITRKEVEVASTIRRDLRLALEKGQFFLCYQPLVDIRTGKV 535 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +EAL++W HPK G IS F+ IAEE I +I ++L R + W + Sbjct: 536 TSMEALLRWQHPKKGLISPIHFIPIAEETRQIISIGEWVLRAACRQMKEWLNM-GYSGFN 594 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ L + + + ++++ P ++L +E++++ E L RL+++G Sbjct: 595 VSVNVSVHQLQQPDFAKVVFDILNEIELEPRYLELEITETILIEAMETVVRNLYRLKEVG 654 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTII 914 + + +DDFGT+ S YL D +K + S ++ E AI+ +II + ++ + Sbjct: 655 VKIIIDDFGTENSSFKYLQKFTVDGLKIDRSFVSEIKVEVNKAIVDAIIFLGHRMKLGVT 714 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 A+ + + + L GCD +Q + + PL + ++++++ Sbjct: 715 AEGVETKEQLDCLIESGCDKVQGYYFSKPLPPDEAIRMVQKE 756 >gi|17230662|ref|NP_487210.1| hypothetical protein alr3170 [Nostoc sp. PCC 7120] gi|17132265|dbj|BAB74869.1| alr3170 [Nostoc sp. PCC 7120] Length = 1021 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 164/586 (27%), Positives = 289/586 (49%), Gaps = 9/586 (1%) Query: 378 IVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435 + +L + + L ++ + ER + ++W + + + Sbjct: 435 LGMLTNISDVYDELRLRKQAEASLQESKERLDGILNSLEAVIWSIAADTFEMLYLNSAVV 494 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + G + + + W IH D+ + + G + E+R+ D Q W+ Sbjct: 495 QVYGRSVCEFYDNPKLWFDLIHPEDQQRVSQSIKPLLAN--GSHELEYRILRQDGQVRWL 552 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + ++ G +R G+A DITE+K E ++ +AF D+LTG+PNR F+DRL + Sbjct: 553 YNHSHVIYDAVGQPIRIEGVATDITERKNMEEKLVYHAFYDDLTGLPNRVLFMDRLAQTI 612 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D + N V+ +D+D++K +ND L VGD +LVS +R+ L+ D LARL G+ Sbjct: 613 DQAKESPNDLFAVLFLDLDRFKVVNDSLSHLVGDQLLVSFAQRLQSCLQPEDTLARLGGD 672 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L + A + +++ +P NL E+ T SIG A T+ + ++++L+ Sbjct: 673 EFTILLSHIQSIDDATRIAEKIHQALKLPFNLSGYEVFTTVSIGIALSTNDYVQAADLLR 732 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A+ A+Y AK +G F + + ++ DL A+ ELY+VY PI+ + Sbjct: 733 DADTALYCAKEQGKAWHIVFDSTMYDRAVALLQLETDLRWAIARQELYVVYQPIVSVATG 792 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-P 792 +I G EAL++W HP+ G IS EF+ +AEE +I I F+L + + W + Sbjct: 793 KITGFEALVRWQHPERGLISPVEFIPVAEETGLIIQIGQFVLRESCQQLKQWHLEFPEFQ 852 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + I +N++ K L E ++ L+ + PS IKL +ES +M +P ++ +L +L+ Sbjct: 853 HLSINVNLSGKQFSQPYLVEEIEQLLQEFDLDPSSIKLEITESAIMASPGQAATILQQLK 912 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910 +GI L +DDFGT S L+YL P D +K + S AI+R+I+ +A N+E Sbjct: 913 TLGIQLCIDDFGTGYSSLAYLHCFPIDILKIDRSFTKRIDSDSEQLAIIRAIVTLASNLE 972 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +++A+ + + +L + CD Q + PL + + LL + Sbjct: 973 MSVVAEGVETVNQLVQLQLLKCDQAQGYLFSKPLSSDKVSLLLAAK 1018 Score = 79.6 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 51/142 (35%), Gaps = 4/142 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + V + + + E+ V + + +W + + +AT+LG Sbjct: 306 LTHFIGVQNDITQHLQVLETLQQQKEQYRRIVETASEGIWLLNQNNETTFVNQQMATMLG 365 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 M G + ++ D + +L + + +++FR D W II Sbjct: 366 YTIEEMLG--ASLFSFMDAEGLDMAQDLLSQRRQGIQEKHKFKFR--CKDGSDLWAIISC 421 Query: 500 RPMSNSNGDILRYIGIANDITE 521 P+ + + +G+ +I++ Sbjct: 422 TPLFDEQRNYTGALGMLTNISD 443 Score = 61.9 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 6/129 (4%) Query: 407 QSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + + + D + T+ G ++G + G +L + D+ Sbjct: 204 MEQVLATISNGIVLTDANQPDNPIIYVNQAFETMTGYSAGEVIGQNCRFLQT-NETDQPG 262 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 L S + ++ + D W + I P+ +S + +IG+ NDIT+ Sbjct: 263 LWE-LRSALREKKEC-HVIIKNFRKDGTEFWNELYIAPVFDSCEQLTHFIGVQNDITQHL 320 Query: 524 KSLEGILCN 532 + LE + Sbjct: 321 QVLETLQQQ 329 >gi|170750583|ref|YP_001756843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170657105|gb|ACB26160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 703 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 146/577 (25%), Positives = 278/577 (48%), Gaps = 11/577 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + A + + R +LA D +WD D+ ++ +LG G Sbjct: 118 VRTFTDITARKRAEETLQVSETRLALAQDAGSDGLWDCDLTTGEAWSSDRWWGVLGYEPG 177 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502 + R W +H D L + R E R+R D + WM+ R + + Sbjct: 178 ELASHARTWRALLHPEDAGAAERALVEHLSGRAPTYASEHRMRRKDGSWAWMMTRGKVVA 237 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 ++G LR+IG DIT +K + + A D LT +PNR F +RL L + Sbjct: 238 RAADGRALRFIGTQIDITARKAAEGQVAHMARHDGLTDLPNRALFYERLEIRLADLHLNG 297 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 V+ +D+D++K +ND LG A GD +L ++ RI +L+ D++ARL G+ F +++ Sbjct: 298 GA-CAVLCLDLDRFKTVNDSLGHAAGDFLLRAVAHRIRAVLRADDMVARLGGDEFAVLVA 356 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 ++ + A + ++ PI +R + V S+G A S S + + A+LA++ Sbjct: 357 DADDPARAETLAARLIAAVQAPIPFGKRRLKVGLSVGIAQAPSHGFDSETLFRRADLALH 416 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N F + ++ R ++ DL A+E EL L Y P + ++G EA Sbjct: 417 RAKTEGRNTHRVFEPAMDEAEAARRDLERDLRQAIEGDELILYYQPQVSTGTGRLLGFEA 476 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W+HP G + + F+ +AEE +I + ++L R+ W P+ + +N+ Sbjct: 477 LVRWEHPTRGLVPPNAFIPLAEESGLILPLGEWVLRAACREAARWA-----HPLKVAVNL 531 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + +L E + A++++T +P+R++L +E++++ + R+ +L RL+ G+S+ + Sbjct: 532 SPRQFQQADLPERVLAILTETGLAPTRLELEITETLIINDMARALGILRRLKAFGVSIAM 591 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+ L PFD +K + S + + + I+R+++ + +++ +++A+ + Sbjct: 592 DDFGTGYSSLATLQAFPFDKIKIDRSFVGHVEVSPQAAVIVRAVLGLGRSLGMSVVAEGV 651 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++ L CD Q ++ P + + Sbjct: 652 ETDAQMRFLAAEACDEAQGYLISKPQPIERFAEQIDA 688 >gi|220935844|ref|YP_002514743.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] gi|219997154|gb|ACL73756.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] Length = 862 Score = 596 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 132/571 (23%), Positives = 270/571 (47%), Gaps = 7/571 (1%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + +R + A + W+W+I R+ + ++ +LGL Sbjct: 295 REIEERTRVESALRLSEQRLANAQRIARLGHWEWEIATGRLYWSAEVYNLLGLGPEFTTP 354 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +L I +DR + + + + + + R+ D + + + G Sbjct: 355 DYERFLEMIPGDDRQRLQEAIARCLEH-GLPYEIDHRITCPDGSERILHEDGELVYDDEG 413 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 L G A DITE+ + A D +TG+PNR F DRL L + + L Sbjct: 414 KPLLLRGTAQDITERHDYQNRLRHLANFDPVTGLPNRTLFKDRLQHALANATRNQRL-VA 472 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +D+D++K +ND LG +GD++L R+ ++ D +AR G+ F I+L + +S Sbjct: 473 LLFLDMDQFKNVNDSLGHMMGDELLRQTAERLLGCVREGDTVARFGGDEFIILLENIEHS 532 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + + A + +++ P L E E SIG + + +++++A+ AMY AK + Sbjct: 533 EQASLSAERVVQAMRRPFRLGEHEHFCNVSIGISLYPEDDEHPEDLVRHADSAMYLAKAQ 592 Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG + +R++++ L A+E + + Y P + L I G+EAL++W Sbjct: 593 GGAGYRFYTPDMNTRAMERLLLQNQLHQALELGQFQVHYQPQMDLRSGRICGVEALVRWQ 652 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G + +EF+ +AE+ +I+ + ++L AR++ W+D+ P + + +N++ + Sbjct: 653 HPERGLVPPAEFIPMAEDTGLIEPLGEWVLRTAAREVRGWQDRGL-PALNLSVNLSPRQF 711 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 +L ++ +++++ R++L +E +++ + E + L R+ ++G+ +++DDFGT Sbjct: 712 RHPDLPGMVERVLAESGLEAERLELEITERLIIVDLEHTVDTLSRIARLGVRVSIDDFGT 771 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL +P +K + + G AI ++I + + + +IA+ + Sbjct: 772 GHSSLAYLKRLPVHALKIDREFVDGIGQDSDDAAIAEAVIALGRTLRLQVIAEGVETREQ 831 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 L GCD +Q +A P+ + L Sbjct: 832 ASFLREHGCDAVQGFFIARPMPAGELTGWLS 862 Score = 69.2 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 10/191 (5%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 IG+ + + + + V V G + ++ A Sbjct: 92 IIGVGRTVHGQRKDG--SLFPMELAVSEVKAGGEHLFAGIVRDISERHQFHQTLALFRRA 149 Query: 411 VLGS--GDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + + G + D D +R+ A I G+ + + G L D + Sbjct: 150 MDSAYNGIAIADVDAEGERISYANAAFAQITGIPAVDLLGRSLTLLA-CEGEDGQTCTAM 208 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + G ++ R + D W + + P+ N G+I + I + D T K+S + Sbjct: 209 VSQMRTG--GSMRRTLRCQRPDGSLFWNDVTLSPIFNERGEISQCIAVLADATALKESEQ 266 Query: 528 GILCNAFQDNL 538 + +D L Sbjct: 267 ALRR--SRDAL 275 Score = 56.9 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + D V + + P + I G M G + L + DR+ Sbjct: 22 LRAVLEEMVDGVVLINRLGIIREVNPAVTRIFGYERKEMLGANVSLL--VPSPDRERHDQ 79 Query: 467 ILDSFVGYRRGRLQYEFRV---RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 L +++ GR+ R + D M + + + G + GI DI+E+ Sbjct: 80 YLRNYLQTGEGRIIGVGRTVHGQRKDGSLFPMELAVSEVK--AGGEHLFAGIVRDISERH 137 Query: 524 KSLE 527 + + Sbjct: 138 QFHQ 141 >gi|78224277|ref|YP_386024.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter metallireducens GS-15] gi|78195532|gb|ABB33299.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter metallireducens GS-15] Length = 905 Score = 596 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 167/581 (28%), Positives = 282/581 (48%), Gaps = 19/581 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGL 440 T+I + A Q + A+ S + + D + P I G Sbjct: 315 ITIISDISARKRNEQELVL----LKRAMESSINGITITDATHPDNPIIYVNPAFERITGY 370 Query: 441 ASGSMHGPIRNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + +L +DRD + ++ +F R G R D W + Sbjct: 371 GVDEVIDKNPRFLRG---DDRDQAELKKLVQAFKEEREGCFVL--RNYRKDGSPFWNELF 425 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ + +G + YIG+ NDITE ++ E ++ A D LTG+PNR DRL L L Sbjct: 426 IAPVRDRDGVVTNYIGVMNDITEHRRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALE 485 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 A VM +D+D +KK+ND LG VGD +L ++ R+ L+ D +ARL G+ + Sbjct: 486 AFRRRNPICVMFLDLDNFKKVNDTLGHTVGDMLLKAVANRLKNCLRGGDTVARLGGDEYI 545 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I+L + + A M A P+ L+ EI VTASIG A + + T +LKNA+ Sbjct: 546 IVLPNVREVPDVITVAKKMINVFAAPLLLMGNEIYVTASIGIALFPTDGETVDALLKNAD 605 Query: 679 LAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMYHAK +G N+ + + ++ +R+ ++ L AV+N E L Y P + L + I Sbjct: 606 AAMYHAKEQGKNNYQFYSAEMNIRVFERLSLETSLHRAVKNQEFLLHYQPRVDLRNGRIC 665 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G+EAL++W+HP+ G +S ++F+ +AEE +I + ++L +W+D PP+ + Sbjct: 666 GVEALVRWNHPEMGLVSPAKFIPLAEETGLIVPMGEWVLRTACAQNKAWQDAGL-PPLRM 724 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++++ L ++ ++ +T +P ++L +ES+VM E+S +L L GI Sbjct: 725 AVNLSARQFRQENLIAMVEEILMETGLAPQWLELELTESLVMQEAEKSAAILRELTDRGI 784 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 + +DDFGT S LSYL P +K + + + ++++II MA + I Sbjct: 785 EVAIDDFGTGYSSLSYLKRFPIANLKIDQAFIRDMTRDPDDATLVKTIITMAHGLGMKTI 844 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + I L R C+ +Q + + P+ + +LL + Sbjct: 845 AEGVELAEQIDFLCRHQCEEMQGYYFSRPITAEELGRLLAD 885 Score = 84.2 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 4/145 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ V + + + E+ + S + D I G ++ Sbjct: 190 LGIVRDVTESRETGERLRETNEKLDTLIQASPQGIVAVDCGGKVTLWNRAAVEIFGWSAE 249 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + +R L V + E R R D + + P+ Sbjct: 250 EVLGKPYP----VAPAERAAEHRKLRELVLQGKRITDVELRRRRKDGSPIDVSLSAAPIC 305 Query: 504 NSNGDILRYIGIANDITEQKKSLEG 528 + +G L I I +DI+ +K++ + Sbjct: 306 DGSGTPLGVITIISDISARKRNEQE 330 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 11/194 (5%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG----FTVIQHVLATGYF 396 + A +LI M + R + A+ L+++++ + I L + F Sbjct: 21 LLALLLIVFVIELFLMVLLPRTADGGTPLAISLLDALLLVILSAPIIWLSIVRPLRSVAF 80 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + +D L + D + +D ++ P + G S G + I Sbjct: 81 TASLHTD-----LLLDHIADGIISFDGAGRLLSLNPAAEQLFGYQSAEATGRSLGDILAI 135 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +DN G RL E +D + + + + ++GI Sbjct: 136 RSTGKDNPLLTPLVCCGEEHSRLTCEAEGIRSDGSRFPAALSLSRVQMKG--VWHFLGIV 193 Query: 517 NDITEQKKSLEGIL 530 D+TE +++ E + Sbjct: 194 RDVTESRETGERLR 207 >gi|307266512|ref|ZP_07548046.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermoanaerobacter wiegelii Rt8.B1] gi|306918492|gb|EFN48732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermoanaerobacter wiegelii Rt8.B1] Length = 770 Score = 596 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 148/582 (25%), Positives = 283/582 (48%), Gaps = 5/582 (0%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 ++ + Q+++ + + ER L V G+ D +WDWD++ D + I Sbjct: 178 ELMAREEELRQNLIEIQRQQEELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDI 237 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 +G + W +IH D L + + + E+R++ D ++ W++ Sbjct: 238 IGFDKEVISNYRETWTKFIHPRDVKTVINNLRNHLEKKTPFYLCEYRIKIKDGRYIWILS 297 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 R + + + +G +R G DITE+K+ + AF D LTG+P R+ F+DRL + Sbjct: 298 RGKALWDEDGRAIRMAGSHTDITERKQMESKLKYMAFYDPLTGLPRREIFMDRLKIAMAD 357 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + + V +D+D +K IND LG +GD +L + +++ L+ D ++R+ G+ F Sbjct: 358 AKRNGK-KLAVFFVDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEF 416 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L N A + + PI E+ VT SIG A + ++KNA Sbjct: 417 VILLPDIINMDDTNKVANRILELFNQPIKFNNHELHVTISIGIAIYPDHGKNERVIVKNA 476 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK G N + F + + V I+ DL LA+E + +L Y P++ + ++ Sbjct: 477 DIAMYRAKRDGKNGFQYFDSITRKEVEVASTIRRDLRLALEKGQFFLCYQPLVDIRTGKV 536 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +EAL++W HPK G I+ F+ IAEE I +I ++L R + W + Sbjct: 537 TSMEALLRWQHPKKGLINPIHFIPIAEETRQIISIGEWVLRAACRQMKEWLNM-GYSGFN 595 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ L + + + ++++ P ++L +E++++ E L RL+++G Sbjct: 596 VSVNVSVHQLQQPDFAKVVFDILNEIELEPRYLELEITETILIEAMETVVRNLYRLKEVG 655 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTII 914 + + +DDFGT+ S YL D +K + S ++ E AI+ +II + ++ + Sbjct: 656 VKIIIDDFGTENSSFKYLQKFTVDGLKIDRSFVSEIKVEVNKAIVDAIIFLGHRMKLGVT 715 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 A+ + + + L GCD +Q + + PL + ++++++ Sbjct: 716 AEGVETKEQLDCLIESGCDKVQGYYFSKPLPPDEAIRMVQKE 757 >gi|150017320|ref|YP_001309574.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] gi|149903785|gb|ABR34618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] Length = 981 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 172/568 (30%), Positives = 293/568 (51%), Gaps = 7/568 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + E+ LA+ + D +W+W++V D + + I G ++ Sbjct: 417 ELQQNEEALRVSEEKYKLALECANDSIWEWNLVTDTFFASDKLIDITGYKLDEINNLRNF 476 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 +H +D D + + + EFR+R + + W++ + + NS G +++ Sbjct: 477 VYENVHSDDLDKVKKDFKNHINQLTDVYSSEFRIRTKSSSYVWILSCGKALRNSEGKVIK 536 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 G DI+E+K S + I AF D+LT +PNR F++RL L LS N + V I Sbjct: 537 ITGSIRDISERKISEDRIKFMAFYDSLTKLPNRTLFMNRLNEQLQLSN-YANKQGIVFFI 595 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K IND +G GD +L+SL ++ L++ D ++RL G+ F I+L ++ +I Sbjct: 596 DLDNFKNINDTMGHEYGDKLLISLAKQFENLIEEKDTISRLGGDEF-ILLHPDSKEDEIQ 654 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 +A + + + + +TAS+G A + SS +L+NA+ AMY AK G N Sbjct: 655 TYANKLLGLFDKVFKIDNKHMYITASVGIALYPKDGRDSSTILRNADAAMYRAKELGKNR 714 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F + S I+ L AV+N+EL + Y P L +I G EAL++ + + Sbjct: 715 FSLFDPEMYLSLERKTSIERILRTAVDNNELIINYQPQYDLQANKIFGFEALLRLNSREL 774 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS +EF+ IAEE I + L++L+ R W + I +NI+S DL + Sbjct: 775 GFISPAEFIPIAEECGYITQLTLWVLKESCRQSAKWFEAGYKFN-SISVNISSVDLQETN 833 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + ++ +I + +P+ I+L +E+V+M + + S +L +L +GI + LDDFGT S Sbjct: 834 FLDNVKEIIESSSVNPNMIELEITETVLMKSFDSSIGILKKLMDMGIRIALDDFGTGYSS 893 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL IP +T+K + S + + + AI+++II MA ++E +IA+ + E + L Sbjct: 894 LSYLRRIPINTLKIDKSFIDNISSNKKEEAIIKNIIQMAHSMELKVIAEGVETEGQLLIL 953 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 RM CDYIQ + + PL N + +LL++ Sbjct: 954 ERMKCDYIQGYYFSKPLLANQLEELLEK 981 >gi|75910072|ref|YP_324368.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Anabaena variabilis ATCC 29413] gi|75703797|gb|ABA23473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Anabaena variabilis ATCC 29413] Length = 1021 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 161/586 (27%), Positives = 290/586 (49%), Gaps = 9/586 (1%) Query: 378 IVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435 + +L + + L ++ + ER + ++W + + + Sbjct: 435 LGMLTNISDVYDELRLRKQAEASLQESKERLDGILNSLEVVIWSIAADTFEMLYLNSAVV 494 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + G + + + W IH D+ + + G + E+R+ D Q W+ Sbjct: 495 QVYGRSVCEFYDNSKLWFELIHPEDQQRVSQSIKPLLAN--GSHELEYRILRQDGQVRWL 552 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + ++ G +R G+A DITE+K E ++ +AF D+LTG+PNR F+DRL + Sbjct: 553 YNHSHVIYDAVGQPIRIEGVATDITERKNMEERLVYHAFYDDLTGLPNRVLFMDRLAQTI 612 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + + N V+ +D+D++K +ND L VGD +LVS +R+ L+ D LARL G+ Sbjct: 613 NQAKESPNDLFAVLFLDLDRFKVVNDSLSHLVGDQLLVSFAQRLQSCLQPEDTLARLGGD 672 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L + A + +++ +P NL E+ T SIG A ++ + ++++L+ Sbjct: 673 EFTILLSHIQSIDDATRIAEKIHQALKLPFNLSGYEVFTTVSIGIALSSNDYVQAADLLR 732 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A+ A+Y AK +G F + + ++ DL A+ ELY+VY PI+ + Sbjct: 733 DADTALYCAKEQGKAWHIVFDSTMYDRAVALLQLETDLRWAIARQELYVVYQPIVSVATG 792 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-P 792 +I G EAL++W+HP+ G IS EF+ +AEE +I I F+L + + W + Sbjct: 793 KITGFEALVRWEHPERGLISPVEFIPVAEETGLIIQIGQFVLRESCQQLKQWHLEFPEFQ 852 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + I +N++ K L E ++ L+ + + IKL +ES +M +PE++ +L +L+ Sbjct: 853 HLSINVNLSGKQFSQPYLVEEIEQLLQEFELDANSIKLEITESAIMASPEQAATILQQLK 912 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910 +GI L +DDFGT S L+YL P D +K + S AI+R+I+ +A N+E Sbjct: 913 TLGIQLCIDDFGTGYSSLAYLHCFPIDILKIDRSFTKRIDSDSEQLAIIRAIVTLASNLE 972 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +++A+ + + +L + CD Q + PL + + LL + Sbjct: 973 MSVVAEGVETVNQLVQLQLLKCDQAQGYLFSKPLSSDKVSLLLAAK 1018 Score = 77.7 bits (190), Expect = 9e-12, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 4/127 (3%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + E+ V + + +W + + +A++LG M G + Sbjct: 321 QALETLQEQKEQYRRIVETASEGIWLLNENNETTFVNQQMASMLGYTIEEMLG--ASLFS 378 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 ++ D + +L + + ++FR D W I+ P + G+ +G Sbjct: 379 FMDAEGLDIAQDLLLGRQQDIQEKHNFKFR--CKDGSDLWAILSCTPFLDEQGNYTGALG 436 Query: 515 IANDITE 521 + +I++ Sbjct: 437 MLTNISD 443 Score = 68.8 bits (167), Expect = 5e-09, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 6/129 (4%) Query: 407 QSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 A+ + + D + + G ++G + G +L + Sbjct: 204 MEQALAAISNGIVLTDANQPDNPIIYVNQAFEAMTGYSAGEVIGQNCRFLQANETD--QL 261 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + L S + ++ + D W + I P+ +S G + +IG+ NDIT Sbjct: 262 SLSELRSALQEKKEC-HVVIKNFRKDGTEFWNELYIAPVFDSCGQLTHFIGVQNDITHHL 320 Query: 524 KSLEGILCN 532 ++LE + Sbjct: 321 QALETLQEQ 329 >gi|320162150|ref|YP_004175375.1| putative signaling protein [Anaerolinea thermophila UNI-1] gi|319996004|dbj|BAJ64775.1| putative signaling protein [Anaerolinea thermophila UNI-1] Length = 820 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 168/562 (29%), Positives = 296/562 (52%), Gaps = 5/562 (0%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + ER LA L + D +WDW+I RV +P ILG G + + +W I Sbjct: 251 ALRESQERFMLATLAANDGIWDWNIKSGRVYYSPRWKEILGFTEGEIGHRMEDWYARILP 310 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D D+F++ L+S + RL+ E R+ D W+++R M N G+ R G +D Sbjct: 311 EDLDSFQSALNSLLSGATSRLECEIRMVLKDGGTVWVLVRGLAMRNREGEAYRIAGSMSD 370 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE+K+++E + A D LTG+PNR LDRL ++ S V+ +D+D++K Sbjct: 371 ITERKQAIEQLTRAALYDTLTGLPNRTLLLDRLGMAIERSRRAGGTFGAVLFLDLDQFKV 430 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG GD++L+ + R+ + L+ D LAR G+ F I+L S ++ + A ++ Sbjct: 431 VNDSLGHPAGDEMLIQVGHRLQKCLRASDTLARFGGDEFVILLESVSSRRDVLQVADRVQ 490 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696 +++ P + R++ T S+G T E+L++A++AMY AK G F Sbjct: 491 HALSEPFEIAGRKVFTTVSMGIVIGLKQYNTREEVLQDADIAMYRAKSSGKARYVIFDAT 550 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + +R+ ++ DL A+E + LYLVY PI+ L ++G EAL +W HP+ G I ++ Sbjct: 551 MRKRAINRLSLEMDLRHAIEQNHLYLVYQPILELQSGALIGFEALARWQHPEHGLILPAD 610 Query: 757 FMLIAEELCMIKAINLFMLERIARDII-SWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ IAEE +I+ + ++L R + ++ P+ I IN++S+ + ++ E ++ Sbjct: 611 FIPIAEETSLIREVGRWVLREACRQFAPIFYQTKHIRPLVISINVSSRQITESGFVEYIR 670 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + P+ +KL +ES ++ + + +R + +LR++G+ + +DDFGT S LSY+ Sbjct: 671 ETLEGYRLPPTCLKLEITESALIESVDIARHVFHQLRQMGVDIHVDDFGTGYSSLSYIHR 730 Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P D +K + + + E + I RSI+ MA+++ +A+ I + L +M C+ Sbjct: 731 LPVDVIKIDQAFVQKLGEDEQSLEITRSILHMARSLGIKTVAEGIESQQQYLFLQQMACE 790 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 Y Q ++ P+ + LK Sbjct: 791 YGQGYFLSQPMTIAQVEDFLKS 812 Score = 74.2 bits (181), Expect = 9e-11, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 11/191 (5%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 + L ++ L+ +I L G + + I+ +L+ + L Sbjct: 77 LVLLEKPHSEILEGILIAQGLRGIEIPTTTVQLVAQIETLLSRHEILNQQRQNEAYFRLL 136 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + S ++++ D +P + LG + RN+L ++H D + L Sbjct: 137 LENSLEVIFVLDADYRIRFASPSLRLTLGYPPDQVFQ--RNFLEWLHPEDAPQAKDTLQW 194 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMI-IRIRPMSNSNGDILRYIGIANDITEQK------ 523 V + R++ D +H + + I I + DITEQ+ Sbjct: 195 AVEHPESIQALRVRLQHLDGSWHIFEVFSKSRLQDE--QIKGIILNSRDITEQQLVYNAL 252 Query: 524 KSLEGILCNAF 534 + + A Sbjct: 253 RESQERFMLAT 263 >gi|296129272|ref|YP_003636522.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cellulomonas flavigena DSM 20109] gi|296021087|gb|ADG74323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cellulomonas flavigena DSM 20109] Length = 1126 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 156/585 (26%), Positives = 283/585 (48%), Gaps = 5/585 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ L + + ER +LA + D +WDWD+ V + +LG Sbjct: 539 AVLLAVALDQDRAVEALRVSEERYALAAEAANDGMWDWDLETGAVYYSARWKALLGYRDH 598 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G WL +H DR L + R ++ E+R+R AD + WMI + Sbjct: 599 EIEGTSHEWLSRVHPADRGAVDRALAHHLDGRDPAMEVEYRLRTADGSYRWMITSALSVR 658 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +++G R +G D+TE+K+ + + +A D LTG+PNR FL+RL + + + Sbjct: 659 DADGTATRLVGSMTDVTERKQLEDQLRHDAHYDLLTGLPNRALFLERLNQSILRTRRHPD 718 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R V+ +D+D +K +ND LG VGD++L+ + R+ ++ D ++R G+ F +++ Sbjct: 719 YRFAVIFLDLDGFKVVNDSLGHQVGDELLIEVAARLSSEVRATDTVSRFGGDEFALLVDD 778 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + D + +++P+ L +R TV+A+ G A S T+ E L++A+ AMY Sbjct: 779 VKDVAGLPDVVRRLLSVVSVPVVLEDRTRTVSAAAGIAVSASGYDTADEYLRDADTAMYR 838 Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G V F + + R+ ++ L + E L Y PI+R+ +IVG+EAL Sbjct: 839 AKAEGPGAVVLFDTAMHARAMARLQMESALDQGIAEDEFELFYQPIVRMDTRQIVGMEAL 898 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINI 800 I+W HP+ G ++ ++F+ +AE + I + + R I W D + +N+ Sbjct: 899 IRWRHPQRGLVAPNDFLPVAEATGHTRPIGQWTIGEACRQIREWLDVVPGFEACTVSVNL 958 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +++ D +L +++ + + S I +E V+M N + + L +LR+ G+ L + Sbjct: 959 SNRQFWDPDLRPTLRSALDRYAVPTSSIVFEVTEGVIMDNQDVAVSFLHQLREEGVELHV 1018 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LS L +P +K + S + + + ++ ++ M +IA+ I Sbjct: 1019 DDFGTGHSSLSSLHELPVGALKIDRSFVQRMQTSPRSHELVGLMVTMGTRFGLDVIAEGI 1078 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 E + L+R+GC Y Q + PL LL + + ++ Sbjct: 1079 ETEEEAAALSRLGCPYAQGYLFSRPLPATEATALLLAQTAVTASS 1123 >gi|291613934|ref|YP_003524091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291584046|gb|ADE11704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 995 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 159/569 (27%), Positives = 272/569 (47%), Gaps = 11/569 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + R S A+ G GD VWDW++ + V+ + + G A + + W Sbjct: 426 QAEEALRESEARWSFALEGGGDCVWDWNVSNNEVSLSKGGKGMFGFADDEIGNDMSEWNA 485 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYI 513 +H D + + F + R E+RVR D+ + W++ R +++G + R I Sbjct: 486 RVHPEDISRLLSRISDFFHSKADRFSAEYRVRCKDDSWKWILTRGMVAHRSTDGRVTRMI 545 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 G D++E+K + E I A D+LT +PNR+ F DRL + L+ D + +M+ID+ Sbjct: 546 GTHTDLSERKLAEETIRRQANYDSLTQLPNRRLFRDRLEQTIRLAKRDQS-SFALMLIDL 604 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K++ND +G GD +LV +RI ++ D +AR+ G+ F +IL N+ I Sbjct: 605 DHFKEVNDTMGHDAGDFLLVDAAQRIQHCVRESDTVARMGGDEFVVILPDVNDPDNIERI 664 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + +A P L E + ++ASIG + S + +LKNA+ AMY AKH G N + Sbjct: 665 AQNIITKLAAPFVLGEEKAFISASIGITLYPSDADSMETLLKNADQAMYVAKHLGRNRMS 724 Query: 694 SFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F R+ + DL A+ +++L + Y PI+ L +I EALI+W HP G Sbjct: 725 YFTPVLQENAQKRMRLVNDLRDALSSNQLRVFYQPIVELATGDIHKAEALIRWLHPTRGM 784 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-- 809 +S SEF+ +AEE MI I ++L + + + + I +N + ++ Sbjct: 785 VSPSEFIPLAEETGMIIEIGDWVLRQAMHQVKRLQAS-HHKGFQISVNKSPVQFHNDNPL 843 Query: 810 -LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 E + + + S + + +E V++ + + L R GI + +DDFGT S Sbjct: 844 KAAEWLGE-LEQNGLLASSLVVEITEGVLLDDDGNVKDRLLASRDAGIQVAIDDFGTGYS 902 Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL D +K + + + +A+ +II MA + +IA+ + E Sbjct: 903 SLAYLKKFDIDYLKIDQTFVNNLGNQSDDMALCEAIIVMAHKLGLKVIAEGVETEQQRDL 962 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + GCDY Q + + + LL++ Sbjct: 963 LKQAGCDYAQGFLFSKAIPAEELEDLLRQ 991 Score = 86.2 bits (212), Expect = 3e-14, Method: Composition-based stats. Identities = 35/359 (9%), Positives = 99/359 (27%), Gaps = 9/359 (2%) Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232 + +W + S + + L + R + + A + + Sbjct: 76 LVIWRSVPLSFFIASSNVLEALTAVWLLSLIKTFDSGFKQPRDYLWL---IFAGSIAAML 132 Query: 233 SIDFGFLSKLVNLPSGELLIWR-ACSEIALSSSLIIFLFMYLHWNRWHA-KVGYITFSGI 290 + G ++ + I+ + + I +L R + S Sbjct: 133 AATIGVVTLVFANVLPIADIFHAWGYWVMGNLLGIALGTPFLLIWRKQPSRWINKEQSRW 192 Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV-LLIPAWILIFI 349 +++ ++F +V + + ++ + +L + Sbjct: 193 LELSLFAVLAFLTSLVAFHGWTSSSFEDIPLGYLMYLFVTWAAIRLGRHGVTLVLLLTAV 252 Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVI-LIGFTVIQHVLATGYFSQGIFSDGERQS 408 + + DI L +I + L+G + + + R Sbjct: 253 QGVLGALDGVGFFAGDIHSGLANFWLYMISLSLVGVVLESTIRQHRRDGDALRESESRLH 312 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + + +W G+ + + + Sbjct: 313 AILDHAPVGIWLVGKDGRYQFVNKRFCDATGIPESAFLATT-HLPDLMGEQIAAACLASD 371 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + + E + D + H + + + +SNG+++ IGI+ D+T + ++ E Sbjct: 372 QACLSQDEPYVSVET-LPLVDGKLHQLEVTKAQLRDSNGEVIGAIGISVDVTGRNQAEE 429 >gi|309792653|ref|ZP_07687106.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oscillochloris trichoides DG6] gi|308225281|gb|EFO79056.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oscillochloris trichoides DG6] Length = 717 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 162/617 (26%), Positives = 300/617 (48%), Gaps = 9/617 (1%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV----LATGYFSQGIFSD 403 + I + + + + L + + + + Sbjct: 92 VVTCIQMGAEDYLFKPFNPLLLQTKVSVSLAKKRLQDQERRQRAELERQIAERAVELERS 151 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 ER +LA G+ D +WDWD+ + + + ++LG + + W+ IH +D++ Sbjct: 152 EERYALAARGANDGLWDWDVPNNHLFLSTRWKSMLGYRDEDIGNNPQEWMHLIHPDDQEL 211 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 F+ L + ++E+R+R D + W++ R + + N +LR G DI+ ++ Sbjct: 212 FKVRLAAHFRRLLDSFEHEYRIRNYDGSYRWVLCRGLAVWDENDQVLRIAGSQTDISLRR 271 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + + + +A D LTG+PNR FLDRL + +S R V+ ID+D++K IND L Sbjct: 272 AAEQQLQHDALHDLLTGLPNRGLFLDRLERAITISRRHPERRFAVLFIDLDRFKTINDSL 331 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L+++ +RI L+ D +AR+ G+ F I++ + I + SIA Sbjct: 332 GHTAGDQLLIAVAQRILGCLRPSDTVARIGGDEFTILIEDIADFQMIQAIVERIHASIAE 391 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 PI L TASIG + +++EM+++A+ AMYHAK G F + + Sbjct: 392 PIQLGGHRTISTASIGVTTSDLQYTSATEMIRDADTAMYHAKMGGKARHVIFTPAMHAQA 451 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +++ ++ DL A+ EL L Y PI+ L ++G EALI+W HP+ G + F+ IA Sbjct: 452 MEKLQMESDLRGALGAGELRLHYQPIMSLEHGTVIGFEALIRWQHPQRGLLYPGAFLDIA 511 Query: 762 EELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISK 820 EE +I I+ ++L + +W+ + PP+ + +N++++ + + + + ++++ Sbjct: 512 EETGLIVPISWWVLRTSCLEASNWQREFPGDPPLSVNVNLSARLFAEPSIVDQIADVLAE 571 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + PS +KL E +M ++ +L R+R++G+ L +DDFGT S LSYL P T Sbjct: 572 SGIPPSSLKLELIEHSLMTLSNQTSDVLRRIREMGVQLCIDDFGTGYSSLSYLHSFPVST 631 Query: 881 VKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + ++ I+++II +A+ + ++A+ I E ++L + C Q Sbjct: 632 LKIDRSFINRMGPLGEQGEIVQTIIGLARTLNLDVVAEGIETEQQYQQLRDLQCGLGQGL 691 Query: 939 HVASPLGFNSILKLLKE 955 A L + LL Sbjct: 692 LFAPGLDSEGVRALLSN 708 >gi|22299402|ref|NP_682649.1| hypothetical protein tll1859 [Thermosynechococcus elongatus BP-1] gi|22295585|dbj|BAC09411.1| tll1859 [Thermosynechococcus elongatus BP-1] Length = 712 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 162/600 (27%), Positives = 289/600 (48%), Gaps = 10/600 (1%) Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 ++ I ++ T ++ A + +R +L D +W Sbjct: 115 GQVLEMIWAFVRFPNGEGLICGYNITDMKLTQA------ALLETSDRYALLTRSINDGIW 168 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 DW++ + + +ILG + I +WL IH D D + L + + Sbjct: 169 DWNLTTNETFYSSRWKSILGYQDDEIGNHIDDWLKRIHPQDGDRVKLNLMLHIRGQTPHF 228 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 EFR++ + + W++ R + + +G+ R G D+TE + +L + D LT Sbjct: 229 HQEFRIQHRNGAYRWVLARGLVLRDVHGNATRVAGSLTDLTEHRLGEAQLLHDGLHDWLT 288 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+ NR DR+ + + ++ IDID++K IND LG + GD +L+ L R+ Sbjct: 289 GLANRTLLFDRIEQAARHGRRRPDYKLAILFIDIDRFKVINDSLGHSSGDLILIELANRL 348 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 +++ D +AR+ G+ F I+L +++ + + P + ++ I + SIG Sbjct: 349 TRIVRADDTVARIGGDEFVILLDDISDNNDALAVCDRIHSELDKPFVVNDQPIALRVSIG 408 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVEN 717 A ++ + L+NA++AMY AK GGN + F DR+ ++ L A+E Sbjct: 409 VALRSAHIEKAENYLRNADIAMYRAKLAGGNRYQVFSEDMHLMARDRLSLEIGLRQAIER 468 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E L+Y PI RL D + G EALI+W HP G + F+ +AEE +I I +++ R Sbjct: 469 DEFTLLYQPIYRLRDNALYGFEALIRWQHPTQGFLLPDRFIPLAEETGLILPIGDWVIWR 528 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 RD+ W +Q + + +N++++ L+ L E + A + +T P + L +ESV Sbjct: 529 ACRDLQYWHEQFPQCQLSVNVNLSNRQLMHPALPEQVLAALEQTQIPPHCLHLEMTESVG 588 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895 + P++ R L +L+ GI L+LDDFGT S L YL ++P D +K + S + TE+R Sbjct: 589 IDQPDQVRETLCKLKAQGIKLSLDDFGTGYSSLRYLTHLPIDILKVDRSFVKLITETEQR 648 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ +I+ +AK + ++A+ + + L +GCDY+Q + + PL + LL + Sbjct: 649 PLVIDAIVSLAKGLALEVVAEGVEHPYQVTRLRELGCDYVQGYYFSRPLTTEQVSALLAQ 708 >gi|158319674|ref|YP_001512181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkaliphilus oremlandii OhILAs] gi|158139873|gb|ABW18185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkaliphilus oremlandii OhILAs] Length = 703 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 140/576 (24%), Positives = 278/576 (48%), Gaps = 8/576 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++Q G + +R SL V G+ D +WDWD++ + + + G A + Sbjct: 127 MLQQYDEIGKHRDALMVSNQRYSLVVEGANDGLWDWDLINETYFFSLKHKGVFGYAPEEL 186 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 W H D + +++ + G + +R+R + ++ W++ R + + Sbjct: 187 ENTFEAWKSLFHPEDLKEALEKVAAYLENPKEGIYENIYRIRCKNGEYRWILSRGKAVW- 245 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G +R G DITEQ+ + A+ D LTG+ N++ + + +L + + Sbjct: 246 EDGKAIRIAGSHTDITEQQNLQNKLHTMAYYDTLTGLYNKEMLKEEMEKLLREA-ETEKK 304 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + ++ +DID +K IND+LG +GD ++ + + +K P+++ARL G+ F ++L Sbjct: 305 KMALIYLDIDNFKHINDILGHEIGDKMITYIANILSHQVKAPNLVARLGGDEFAVVLGEI 364 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + P NL ++E ++ SIG A + T + +++NA+ AM+H Sbjct: 365 KTIEDVLQEIEKFSSYLRRPWNLNKQEFFISTSIGVALYPDHGKTLATLMQNADTAMFHI 424 Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G + V + ++ D + + L + N E + Y P I L E++G EALI Sbjct: 425 KENGRDGVGIYAPYMTEKTLDYIQMSSQLRYGIHNEEFTVYYQPQIDLKTNEVIGTEALI 484 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HPK G I ++F+ AE I I ++ + + + W+ + + +N++S Sbjct: 485 RWLHPKKGFIPPNDFIPFAETTGYITEIEKWVFKTVVEQKVKWQKEGYD-NFKVSVNLSS 543 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K L +L ++ ++ + S I++ +E+ ++ N E++ +L +L+++ I++ LDD Sbjct: 544 KMLTHPQLLAYIKKILDEYNISGDYIEMEVTETAIIDNLEKATDVLKQLKELNITIALDD 603 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P D +K + + + IL+ +I +A ++ ++A+ + Sbjct: 604 FGTGYSSLTYLQKLPIDILKIDRDFIKNIQDINDEAHILKLVIDLAHSLGLKVVAEGVET 663 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E + L + CD +Q + + PL I L+ R Sbjct: 664 EAQLDYLRKNHCDIVQGYYFSKPLPEADIKTFLENR 699 >gi|170742049|ref|YP_001770704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] gi|168196323|gb|ACA18270.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] Length = 990 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 163/594 (27%), Positives = 277/594 (46%), Gaps = 13/594 (2%) Query: 377 LIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++ I I T + S+ + ER +LA+ D +WD D+ + Sbjct: 381 VVGISIDVTDRKRAEQARQASEAALRVSEERLALALESGSDGLWDCDLTTGTSWVSDQWL 440 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 T+LG G + WL +H +DR+ + + R + E R+R D + W+ Sbjct: 441 TMLGYRKGELDAGYETWLRLLHPDDREAVLARVRDHLEGRTPSYECEQRMRRKDGGWAWI 500 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + R + + +G R +G DIT +K++ + A D LT +PNR F +RL Sbjct: 501 LERGKVVSRAPDGTARRVVGTHIDITARKEAEARVTHMARHDTLTDLPNRALFRERLEQR 560 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L ++ +D+D +K +ND LG GD +L + RR +L+ D +ARL G Sbjct: 561 LAEIRRHGG-HCVLLALDLDAFKAVNDSLGHLAGDALLREIARRFRSVLRAEDTVARLGG 619 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F I+L + DFA + S+ P+ L +++ V SIG A + + Sbjct: 620 DEFAILLGGTPRLESVMDFAERLVASVREPVTLEGQQVGVGVSIGIAIGPEHGEDADTLF 679 Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A+ A+Y AK G N F + +R ++ DL LA+ E L Y P++ + Sbjct: 680 RHADRALYRAKSDGRNTFRFFEPAMDRAAEERRRLELDLQLALRRGEFVLHYQPVLDVAS 739 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 IV +EAL++W+HP G + F+ +AEE +I A+ ++L RD + Sbjct: 740 RAIVAVEALVRWNHPTRGQLGPGVFIPLAEETGLIVALGEWVLRTATRDARHLPEH---- 795 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +NI++ + L + ++A + SP R++L +ESV+MG+ R L LR Sbjct: 796 -VRVAVNISAVQVRHASLGQTVRAALDAAALSPDRLELEITESVLMGDSSLVRDALSGLR 854 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911 ++G L LDDFGT S LSYL PFD +K + S + + + ILR+I+ + + Sbjct: 855 ELGTHLALDDFGTGYSSLSYLRQYPFDRLKVDRSFIASIPDQGTVTILRAIVGLGTGLGM 914 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF--PLVKNT 963 T+ A+ + + GC +Q P +L L+ R P +++T Sbjct: 915 TVTAEGVETPAQFAFVEAEGCAQVQGYLTGKPQPLPDLLATLEGRNDQPPLQDT 968 Score = 99.3 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 2/148 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + +R LA +G ++DW ++ +P+ + L Sbjct: 253 LGTALDIEEIVAGREALRVTTDRLRLAQEAAGAGLFDWSLIDGSALLSPETLRLFNLPED 312 Query: 444 SM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 W +H +D V L+ EFR+ D W++ R M Sbjct: 313 RATRVTQAEWAAAMHPDDLPVLAAETRRAVAT-GTTLRVEFRIPLPDGSDRWIMGTGRVM 371 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530 ++ +G +R +GI+ D+T++K++ + Sbjct: 372 ADGDGRAVRVVGISIDVTDRKRAEQARQ 399 Score = 71.1 bits (173), Expect = 8e-10, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 9/156 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLAS 442 + Q + + R G +VW + + A G Sbjct: 129 VRTYTDITDRKRAEQQVAASEARYRALADGLPQMVWVMRASDGELLYRNARFAHYYG--- 185 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + H +D + E R+R D W + P+ Sbjct: 186 -EIGTARGERVERSHPDDAARVAAEWARCRAE-GCPFEIEVRLRRHDGVHRWHKLVKIPV 243 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 ++ G+ + ++G A DI E E + D L Sbjct: 244 RHA-GETVEFLGTALDIEEIVAGREALRV--TTDRL 276 Score = 38.8 bits (89), Expect = 4.6, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 37/138 (26%), Gaps = 16/138 (11%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + + D + +L L M + RD FR Sbjct: 29 VLETMDQGLMMIDAEGVVRVCNGRVIEMLDLPPEMMRAQPSFDQVRQYQLGRDEFRRSPK 88 Query: 470 SFV----GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 F + + + + + IR P+ + DIT++K++ Sbjct: 89 EFRQWVADTGLRPRHHVYERERPNGRI--LEIRTVPLPGG-----GAVRTYTDITDRKRA 141 Query: 526 LEGI-----LCNAFQDNL 538 + + A D L Sbjct: 142 EQQVAASEARYRALADGL 159 >gi|256005420|ref|ZP_05430384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium thermocellum DSM 2360] gi|281417124|ref|ZP_06248144.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium thermocellum JW20] gi|255990646|gb|EEU00764.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium thermocellum DSM 2360] gi|281408526|gb|EFB38784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium thermocellum JW20] gi|316940835|gb|ADU74869.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium thermocellum DSM 1313] Length = 862 Score = 589 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 154/569 (27%), Positives = 272/569 (47%), Gaps = 9/569 (1%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + E + + G+ V D + +I +LGL+ + G + L Sbjct: 286 SKAYRELRKQHEWLRITLSSIGEAVITTDENGTVTFSNYEIQKMLGLSEEEILGKKLDKL 345 Query: 454 PYIHINDRDNFRTI-LDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 ++ R+ I ++ V +L+ + + + + + P+ N + I+ Sbjct: 346 LSGLVDKREKVYKIPIEEVVNRGSMIKLETDLSLVTPGGR-RLVEGTVAPIRNDSDVIIG 404 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE KK E + + D LTG+PNR F DRL L S + N ++++ Sbjct: 405 TVVALKDITEIKKKDEILYNMEYYDPLTGLPNRSLFSDRLKMALAQSKRN-NEMCALIIL 463 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K IND LG +VGD +L + +I L+ D +AR+ G+ F II + Sbjct: 464 DLDNFKAINDTLGHSVGDMLLKQVAEKIKGYLREVDTVARIGGDEFIIIQPQIKDINDAT 523 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + K P L +E +TAS+G + + + KNA+ A+Y AK G N+ Sbjct: 524 RAADRILKKFQQPWILEGKEYYITASMGIGIYPNDGEDPQTIFKNADTALYRAKELGRNN 583 Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + S + + + L A+E E L Y P I + +IVG EAL++W HP + Sbjct: 584 YQLYTESMNQKVLQRLDIENSLRRAIEKEEFVLFYQPQIDIKTGKIVGFEALLRWYHPDY 643 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + EF+ +AE+ +I I ++LE R W + P + I +N++++ + Sbjct: 644 GLMPPMEFIPVAEDSGLIVVIGEWVLETACRQNKKWIECGLEPHL-ISVNLSARQFQRSN 702 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + E + + S T +P ++L +ES M + + +L +LRK GI ++LDDFGT S Sbjct: 703 IVEVIDRIRSSTGLAPELLELEITESTAMQDLSFTIDVLNQLRKKGIRVSLDDFGTGYSS 762 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL +P DT+K + S + K AI +++I +A ++ T++A+ + + + L Sbjct: 763 LNYLRQLPIDTLKIDKSFVQDIRANSKEEAIAKTVISLAHKLDLTVVAEGVETKEQLLFL 822 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956 + CD Q + PL I K+L+++ Sbjct: 823 KKEKCDKAQGYLFSKPLPAEEIEKMLRDK 851 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] gi|300075689|gb|ADJ65088.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 589 bits (1518), Expect = e-165, Method: Composition-based stats. Identities = 148/576 (25%), Positives = 268/576 (46%), Gaps = 11/576 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445 +Q V +Q + R + + V+ + P +A I G + + Sbjct: 121 LQDVTERKEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL 180 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 +R+ +++ R + + +E RV D + W+ R + + Sbjct: 181 IVGLRDISHQLYVE--PERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDE 238 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G + Y G ITE+K + A D LTG+PNR + L L ++ Sbjct: 239 AGKLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVA-RQKGAL 297 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V +D+D++K IND LG VGD++L ++ +R+ L+ D++AR G+ F ++L ++ Sbjct: 298 TAVAFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQT 357 Query: 626 NSLK-IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 IA+ + ++A P +RE VTASIG + + + +LK+A+ AMY A Sbjct: 358 EGEAGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRA 417 Query: 685 KHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +G N+ + F ++ L A++ E L Y P + L D ++G EALI Sbjct: 418 KEQGRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALI 477 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+ P+ G + F+ AEE +I I ++L R +W+ PPI + +N++ Sbjct: 478 RWESPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGL-PPIPVAVNLSP 536 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L L + + +++++ + S ++L +E+VVM + E+S L L+++G+ +++DD Sbjct: 537 RQLNQ-SLPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDD 595 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P D +K + S + AI+++II +A + +IA+ + Sbjct: 596 FGTGYSSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVED 655 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E L CD +Q + P+ + E+ Sbjct: 656 EEQHAFLKENACDEVQGYYFGKPMEVAVFTAWMSEQ 691 Score = 87.7 bits (216), Expect = 9e-15, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Query: 429 TTTPDIATILGLASGSMH-GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + + G + ++L H DR R +D+ + RR R+ E+R+ Sbjct: 34 FVSEGCLALTGYLPEDLLLNQRLSFLELTHPEDRTLVRNHVDACMRERR-RIDIEYRIVR 92 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 AD W+ R + N+NG + G D+TE+K++ + Sbjct: 93 ADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTERKEAAQ 132 >gi|302037835|ref|YP_003798157.1| sensory response regulator with diguanylate cyclase domain [Candidatus Nitrospira defluvii] gi|300605899|emb|CBK42232.1| Sensory response regulator with diguanylate cyclase domain [Candidatus Nitrospira defluvii] Length = 708 Score = 588 bits (1517), Expect = e-165, Method: Composition-based stats. Identities = 163/620 (26%), Positives = 293/620 (47%), Gaps = 19/620 (3%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 + + + A + I ++++L T + R LA Sbjct: 83 LVLTGLDDANSIARAYQHGATDFITKPVNATILCHHVRYMLRTNNVLHALIRSESRLELA 142 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + WDW+ +R++ + ++ +LG+ G +L IH +DR L+ Sbjct: 143 QRIARIGNWDWNPKTNRLSMSNELCRLLGVRPQDFGGTFEAFLNLIHPDDRPVVTGALER 202 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 V + RV + + ++ + D L IG A DITE+K++ I Sbjct: 203 LVSQHTPC-DIDHRVVLPNGTDFIIHLQAEGVREEETDELTVIGTAQDITERKQAERAIH 261 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A+ D+LTG+ NR F DRL+ L + + ID+D++K IND LG VGD Sbjct: 262 QLAYYDSLTGLANRVLFKDRLSNALSYAERYHQ-HLATLFIDLDRFKIINDTLGHTVGDR 320 Query: 591 VLVSLTRRIGELLKFPDIL------------ARLSGNRFGIILISENNSLKIADFAIAMR 638 +L + R+ E ++ D + ARL G+ F I+L + A + Sbjct: 321 LLTHVAERLSESVRQSDSVGRHADHEPTHALARLGGDEFTILLTALPTPEDAGRVARRIL 380 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 +++A P ++ EI ++ASIG + + S T +LKNA+ AMYHAK +G N+ + + Sbjct: 381 EALAHPFSIDGHEIFISASIGISIFPSDGATVEALLKNADTAMYHAKEQGRNNCQFYSSG 440 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ ++R+ ++ +L A+E E + Y P + + +I+G EAL++W HPK G + Sbjct: 441 LNAAAAERLDLENELRRALEREEFVVFYQPKLNIHSRKILGAEALVRWKHPKRGLVPPGV 500 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ A + +I+ ++ ++L R + +W + A + PI + N+++ L + Sbjct: 501 FLNAAIDTGLIRPMDEWVLREACRQVKAW-ETAGLAPITVSANVSNSLFHGRTLPATVAD 559 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + + +PS+++L +ES+ M + E S +L LR +G+ L++DDFGT S LSYL Sbjct: 560 ALRDSGLNPSQLELELTESIAMRDVEASVTMLEGLRTMGVRLSIDDFGTGYSSLSYLQRF 619 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + E + I R+II MA ++ +++A+ + E + L GCD Sbjct: 620 PLSRLKIDQSFVRDLLTNENNVKITRAIIAMAHSLNLSVLAEGVETEGQLARLREEGCDE 679 Query: 935 IQDSHVASPLGFNSILKLLK 954 +Q + P+ LL+ Sbjct: 680 VQGYLFSRPVCAEEFETLLR 699 >gi|125972929|ref|YP_001036839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium thermocellum ATCC 27405] gi|125713154|gb|ABN51646.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Clostridium thermocellum ATCC 27405] Length = 862 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 154/569 (27%), Positives = 272/569 (47%), Gaps = 9/569 (1%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + E + + G+ V D + +I +LGL+ + G + L Sbjct: 286 SKAYRELRKQHEWLRITLSSIGEAVITTDENGTVTFSNYEIQKMLGLSEEEILGKKLDKL 345 Query: 454 PYIHINDRDNFRTI-LDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 ++ R+ I ++ V +L+ + + + + + P+ N + I+ Sbjct: 346 LSGLVDKREKVYKIPIEEVVNRGSMIKLETDLSLVTPGGR-RLVEGTVAPIRNDSDVIIG 404 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE KK E + + D LTG+PNR F DRL L S + N ++++ Sbjct: 405 TVVALKDITEIKKKDEILYNMEYYDPLTGLPNRSLFSDRLKMALAQSKRN-NEMCALIIL 463 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K IND LG +VGD +L + +I L+ D +AR+ G+ F II + Sbjct: 464 DLDNFKAINDTLGHSVGDMLLKQVAEKIKGYLREVDTVARIGGDEFIIIQPQIKDINDAT 523 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + K P L +E +TAS+G + + + KNA+ A+Y AK G N+ Sbjct: 524 RAADRILKKFQQPWILEGKEYYITASMGIGIYPNGGEDPQTIFKNADTALYRAKELGRNN 583 Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + S + + + L A+E E L Y P I + +IVG EAL++W HP + Sbjct: 584 YQLYTESMNQKVLQRLDIENSLRRAIEKEEFVLFYQPQIDIKTGKIVGFEALLRWYHPDY 643 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + EF+ +AE+ +I I ++LE R W + P + I +N++++ + Sbjct: 644 GLMPPMEFIPVAEDSGLIVVIGEWVLETACRQNKKWIECGLEPHL-ISVNLSARQFQRSN 702 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + E + + S T +P ++L +ES M + + +L +LRK GI ++LDDFGT S Sbjct: 703 IVEVIDRIRSSTGLAPELLELEITESTAMQDLSFTIDVLNQLRKKGIRVSLDDFGTGYSS 762 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL +P DT+K + S + K AI +++I +A ++ T++A+ + + + L Sbjct: 763 LNYLRQLPIDTLKIDKSFVQDIRANSKEEAIAKTVISLAHKLDLTVVAEGVETKEQLLFL 822 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956 + CD Q + PL I K+L+++ Sbjct: 823 KKEKCDKAQGYLFSKPLPAEEIEKMLRDK 851 >gi|253999306|ref|YP_003051369.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253985985|gb|ACT50842.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 910 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 164/597 (27%), Positives = 271/597 (45%), Gaps = 10/597 (1%) Query: 364 NDIIQPALVGGLVLIVILIGFT--VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + +I A + VL+ +L Q + + + +R A+ GSGD VWDW Sbjct: 314 SSLIAGAGLAVSVLLYLLSRLFAYRTQTLKTMRDMHKDLILSEQRWKFALEGSGDGVWDW 373 Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 DI ++ V + T+LG+ M + W IH D + L+ ++ + Sbjct: 374 DIEKNEVIRSSRWKTMLGMEDWEMGPELEAWKERIHPEDVSRVLSDLEKYMNGETTQYIN 433 Query: 482 EFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 E R+ D + W++ R + ++G LR +G DIT+ K+S + A D LT Sbjct: 434 EHRLLCKDGSWKWILARGMVVDWAADGRPLRMVGTHTDITKLKESESLVWKQANFDQLTE 493 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR+ F DRL + S + +D+D +K++ND LG GD +L RRI Sbjct: 494 LPNRRMFYDRLAQEIKKSNRLGLPLAL-LFLDLDHFKEVNDTLGHDKGDQLLQEAARRIN 552 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 ++ D +ARL G+ F +IL + I A A+ ++ L E V+AS+G Sbjct: 553 HCVRDTDTVARLGGDEFIVILSELEDLNSIDRIAQAILCKLSASFKLGEDIAFVSASMGI 612 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENS 718 + + + +LKN + AMY AK G N + F S +++I DL LA++ Sbjct: 613 TLYPTDANSIDNLLKNVDQAMYSAKASGRNRISYFTPSMQQAAHQKMLITNDLRLALQEQ 672 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 +L + Y PII L I EAL++W HP+ G +S +EF+ IAE+ +I I ++ E+ Sbjct: 673 QLQVHYQPIIHLASGTIQKAEALLRWHHPQRGMVSPAEFIPIAEDTGLIMEIGDWVFEQA 732 Query: 779 ARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 + W+ Q I +N + D+ + + + + + +E ++ Sbjct: 733 MVQVKKWQQQRGAH-FQISVNKSPVQFKNDSSTHDQWLDYMKQLGLVGQSLVVEITEGLL 791 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKR 895 + + L R GI + LDDFGT S L+YL D +K + S + + Sbjct: 792 LDTSQNVSKKLLAFRDAGIQVALDDFGTGYSSLAYLRRFDIDYIKIDQSFVRNISTQPDD 851 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 +A+ SII MA + ++IA+ I E L GCDY Q + + + L Sbjct: 852 LALCESIIAMAHKLGLSVIAEGIETEEQCALLKAAGCDYGQGYWFSPAVPADKFETL 908 >gi|302344379|ref|YP_003808908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfarculus baarsii DSM 2075] gi|301640992|gb|ADK86314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfarculus baarsii DSM 2075] Length = 972 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 146/562 (25%), Positives = 260/562 (46%), Gaps = 10/562 (1%) Query: 397 SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + ++ + V S + + D I G S + G + L Sbjct: 413 QRKLAEQEQKMAATVFENSIEGIVVADADGKVRLVNSAFTAITGYGSDDVIGKEMDVL-R 471 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 D + I + G+ E+ R + + + + + + +S+G ++ Y+ I Sbjct: 472 AEAMDLALYEEIWGQLAEH--GQWSGEYWNRRKNGEAYPEWLTVTVIRDSHGRVINYLAI 529 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DITE K+S E I A+ D LTG+PNR F DRL L + + + V+ +D+D Sbjct: 530 FYDITEIKRSQEQIRYQAYHDALTGLPNRNLFKDRLGQALHHAERRGS-KVAVLFVDLDN 588 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG VGD VL + R+ ++ D +AR+ G+ F ++L + L A Sbjct: 589 FKLINDSLGHDVGDHVLRDIAGRLRRCVRDEDTVARIGGDEFLMVLEEIDGELGADRVAR 648 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + A P + E + ASIG + ++KNA++AMY AK RG N+ + F Sbjct: 649 RVLDNFARPFGVGGHEFHLGASIGVTVFPDDGQDVETLIKNADMAMYRAKERGKNNYQMF 708 Query: 696 RVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + ++ + L A+E E + Y + + +VG+EAL +W P G + Sbjct: 709 TPAMQAKTNLRMEMERALRQALERDEFVVHYQAKVETVSGRVVGMEALARWQSPGKGLVM 768 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +F+ +AEE +I AI +L + R W+ + + +N+++K L E E Sbjct: 769 PGQFIPVAEESGLITAIGKVILRQACRQASRWQTMTGR-DLRLAVNVSAKQLYQPEFVET 827 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ ++ +T +P ++L +ESVVM + L L +G+SL +DDFGT S L YL Sbjct: 828 VETILRETGLAPGLLELEVTESVVMHQDTAANRTLLELAALGVSLAIDDFGTGYSSLYYL 887 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + P DT+K + + AI+ +I+ + ++ +++A+ + + L +G Sbjct: 888 KHFPIDTLKIDRGFVRDIGRDANDAAIVGAIVSLGHSLGLSVVAEGVETAEQLAYLRALG 947 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 CD Q + + P +LL Sbjct: 948 CDLCQGYYFSEPAPAEQFAELL 969 >gi|307155030|ref|YP_003890414.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306985258|gb|ADN17139.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 1188 Score = 585 bits (1509), Expect = e-164, Method: Composition-based stats. Identities = 170/599 (28%), Positives = 293/599 (48%), Gaps = 9/599 (1%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 I+ VG ++ ++ + + + +R + D+VW Sbjct: 590 IVAEMRVGLIIWEQQKAHLISLRDITERKQIEKALSESEQRLESILNSIEDVVWSTSATT 649 Query: 426 -DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + + P + G + + W +H +D+ + G +YE+R Sbjct: 650 LNLIYLNPATERVYGCSIEQLLAEGNLWFNLVHPDDQALIDAHFKAL--EDTGHSEYEYR 707 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 + D W+ R R + + G +R+ GI +DITE+K E + NA+ D LT +PNR Sbjct: 708 IVRPDGTVRWLYSRSRTIYDPTGKPIRFEGIDSDITERKSFTEQLQYNAYHDPLTSLPNR 767 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 L++L L + +N+ V+ +D+D +K +ND LG VGD +L+++ +R+ L Sbjct: 768 IFLLEKLEEALKKNQNRENIFFAVLFLDLDDFKVVNDSLGHIVGDQLLIAIAQRLKTSLS 827 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 P LAR G+ F I+L ++ + A + + P +L +++ ++ SIG A Sbjct: 828 VPHTLARFGGDEFTILLEEIQSTDEPLKAAQKIHNDLTQPYDLNGQQVFISTSIGIALSD 887 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYL 722 S I E+L++A+ AMY AK G F R+ ++ +L A+E E L Sbjct: 888 PSYIHPQEILRDADTAMYQAKRWGKGGYAVFDQQMHLRAVKRLHLEIELRQAIELKEFLL 947 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y PI+ L + G EALI+W HPK G IS EF+ IAEE +I + ++ ++ R + Sbjct: 948 YYQPIVSLSTGYLTGFEALIRWQHPKKGLISPVEFIPIAEETGLIVPMGKWITQQACRQL 1007 Query: 783 ISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W++Q N+ P+ I +N++SK L ++ L E + ++++T PS +KL +ES++M N Sbjct: 1008 KLWQEQYNLKNPLQISVNLSSKQLRNSHLIEEIDEILAQTGIDPSSLKLEITESMLMENV 1067 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAIL 899 + + +L LRK I L LDDFGT S LSYL P TVK + S + I+ Sbjct: 1068 DIAMNILIELRKRNIELCLDDFGTGYSSLSYLHRFPVTTVKIDRSFVMQMQPGNSNAEIV 1127 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 +II +A ++E T+ A+ + ++ +++L + C+ Q + PL L++ FP Sbjct: 1128 HAIITLAHSLEMTVTAEGVETQLQLQQLQWLECEQAQGYFFSKPLPPKEAGTLIQA-FP 1185 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 42/143 (29%), Gaps = 2/143 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + + E+ L S + V + ++G Sbjct: 375 LCISEDITERKRAEEALKKSEEQFRLVFQHSPIGIAIATPEGKLVRVNEAFSQMMGFTEA 434 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + +D N + + + E R Q + ++ + + Sbjct: 435 ELLKRTCG--DLTYPDDLKNEIPLHQKLLAGEIAYYRLEKRYLTKKGQVLYGMLHVGLIR 492 Query: 504 NSNGDILRYIGIANDITEQKKSL 526 + L +G DI+E+ ++ Sbjct: 493 DEQDKPLNLVGQVVDISEKTQAE 515 Score = 73.8 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 P T LG ++ + ++ IH ++R+ T ++ + +E R R + Sbjct: 168 LNPAWETTLGYSTEELISQP--FIELIHPDEREAALTEIERLGRGQL-TYHFENRYRTRE 224 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + W+ + P +A+DIT++K++ I Sbjct: 225 GTYRWLTLTAVPYVEEG----LIYAVAHDITKRKQTEAEIQQ 262 Score = 48.0 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 23/130 (17%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + +R S + D + + + P + G + + Sbjct: 513 QAEIALRESEDRLSRIITTISDGLIVVNNQGNIKFINPAGEKLFGRSQEELLEQHFGV-- 570 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 FV + E +R A+ Q +R+ + ++ Sbjct: 571 ---------------PFVDGKTT----EIFIRHANQQLIVAEMRVGLIIWEQQKA--HLI 609 Query: 515 IANDITEQKK 524 DITE+K+ Sbjct: 610 SLRDITERKQ 619 Score = 46.9 bits (110), Expect = 0.016, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 44/182 (24%), Gaps = 22/182 (12%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 R V ++ + V + I + Sbjct: 219 RYRTREGTYRWLTLTAVPYVEEGLI--YAVAHDITKRKQTEAEIQQTRNFLQTMIDHLPL 276 Query: 417 IVWDWDIV----RDRVTTTPDIATILGLASGSMHGPI------RNWLPYIHINDRDNFRT 466 V+ D + I G+++ G + + + DR+ F Sbjct: 277 AVFVKDGKPETFSQIILWNKTCEKIFGISATEAIGSTTFEHFSDSQAEFFYQKDRETFAR 336 Query: 467 ILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + R+ P+ + + I+ DITE+K++ Sbjct: 337 RMPLEIPEEEADSYSLGKRLLH---------TVKIPLYDEQDQPQYLLCISEDITERKRA 387 Query: 526 LE 527 E Sbjct: 388 EE 389 >gi|307592283|ref|YP_003899874.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Cyanothece sp. PCC 7822] gi|306985928|gb|ADN17808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Cyanothece sp. PCC 7822] Length = 1152 Score = 584 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 140/604 (23%), Positives = 289/604 (47%), Gaps = 15/604 (2%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 + T + + L G L +V+ + Q + + ER LA+ + Sbjct: 552 LKYTGIIAAT-VGILLTGVLTNVVVTLTHRRTQLEQQIQLRTAELKKMAERLRLALEAAN 610 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 ++D+D++ ++ T +P+ A IL + + H +DR+ + ++++ + Sbjct: 611 QGIFDFDLLTNQATVSPEYALILDYNPEKFQETFSSLIERTHEDDREKIMAMYEAYLNGK 670 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + EFR + A + W++ + + ++ +R +G DIT K+S I A+ Sbjct: 671 ISQHNLEFRQKTATGNWKWIMSVGKIVQWDAQHQPIRLLGTHTDITGHKQSEAKIKHLAY 730 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LT + NR+ FL+ L + L ++ ++ ID+D++K +ND G GD +L+ Sbjct: 731 YDPLTSLANRRLFLEHLESALSVA-RSKGEYGAILFIDLDQFKTLNDARGHDAGDHLLIE 789 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMRKSIAMPINLLE 649 + +R+ + ++ D +ARL G+ F ++L ++ A A +R+ ++ P Sbjct: 790 VAKRLKQSVRKSDTVARLGGDEFVVLLPQLHHEPTTAAHLSREVAEKVRQKLSTPFVFQH 849 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707 E ++ASIG + + T S++LK A+ AMY K +G N V F + R + Sbjct: 850 EEFIISASIGITIFPKANETVSDLLKEADTAMYQVKEKGRNGVCFFDTTMLVQVESRFTL 909 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 +++L A+E E L P + + +E IVG E L++W HP G + F+ +AE+ +I Sbjct: 910 EKELRRALERQEFRLYLQPQVDI-NERIVGAEVLLRWQHPSLGLVPPCAFIPLAEDTGLI 968 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 +I ++L++ + ++ + P + +NI+ + L E ++ +I+ T + Sbjct: 969 ISIGEWVLQQACFFLADFQAK--NPDFHLSVNISPRQLSQAEFVSNLKQIINITAVQANS 1026 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 + L +E +++ + + ++ +L+ +GI+L+LDDFGT S L+YL +P + +K + + Sbjct: 1027 LTLEITERLIIQDVDYVSSVMSKLQDLGINLSLDDFGTGYSSLAYLKRLPLNEIKIDKNF 1086 Query: 888 MTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + ++ +I+ +A++ T++A+ + L + GC + Q P Sbjct: 1087 VQDIGNYSNHAPLIEAILAVARHFNLTVVAEGVETIEQANFLKKRGCHFYQGYLYGKPQP 1146 Query: 946 FNSI 949 + Sbjct: 1147 LETF 1150 >gi|313201397|ref|YP_004040055.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312440713|gb|ADQ84819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 879 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 164/597 (27%), Positives = 272/597 (45%), Gaps = 10/597 (1%) Query: 364 NDIIQPALVGGLVLIVILIGFT--VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + +I A + VL+ +L Q + + + +R A+ GSGD VWDW Sbjct: 283 SSLIAGAGLAVSVLLYLLSRLFAYRTQTLKTMRDMHKDLILSEQRWKFALEGSGDGVWDW 342 Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 DI ++ V + T+LG+ M + W IH D + L+ ++ + Sbjct: 343 DIEKNEVIRSSRWKTMLGMEDWEMGPELEAWKERIHPEDVSRVLSDLEKYMNGETTQYIN 402 Query: 482 EFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 E R+ D + W++ R + ++G LR +G DIT+ K+S + A D LT Sbjct: 403 EHRLLCKDGSWKWILARGMVVDWAADGRPLRMVGTHTDITKLKESESLVWKQANFDQLTE 462 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR+ F DRL + S + +D+D +K++ND LG GD +L RRI Sbjct: 463 LPNRRMFYDRLAQEIKKSNRIGLPLAL-LFLDLDHFKEVNDTLGHDKGDQLLQEAARRIN 521 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 ++ D +ARL G+ F +IL + I A A+ ++ L E V+AS+G Sbjct: 522 HCVRDTDTVARLGGDEFIVILSELEDLNSIDRIAQAILCKLSASFKLGEDIAFVSASMGI 581 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENS 718 + + + +LKN + AMY AK G N + F S +++I DL LA++ Sbjct: 582 TLYPTDANSIDNLLKNVDQAMYSAKASGRNRISYFTPSMQQAAHQKMLITNDLRLALQEQ 641 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 +L + Y PII L I EAL++W HP+ G +S +EF+ IAE+ +I I ++ E+ Sbjct: 642 QLQVHYQPIIHLASGTIQKAEALLRWHHPQRGMVSPAEFIPIAEDTGLIMEIGDWVFEQA 701 Query: 779 ARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 + W+ Q I +N + D+ + + + + + +E ++ Sbjct: 702 MVQVKKWQQQRGAH-FQISVNKSPVQFKNDSSTHDQWLDYMKQLGLVGQSLVVEITEGLL 760 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKR 895 + + L R GI + LDDFGT S L+YL D +K + S + + Sbjct: 761 LDTSQNVSKKLLAFRDAGIQVALDDFGTGYSSLAYLRRFDIDYIKIDQSFVRNISTQPDD 820 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 +A+ SII MA + ++IA+ I E L GCDY Q + + ++ L Sbjct: 821 LALCESIIAMAHKLGLSVIAEGIETEEQCALLKAAGCDYGQGYWFSPAVPADTFETL 877 >gi|226310687|ref|YP_002770581.1| signaling protein [Brevibacillus brevis NBRC 100599] gi|226093635|dbj|BAH42077.1| probable signaling protein [Brevibacillus brevis NBRC 100599] Length = 708 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 146/578 (25%), Positives = 286/578 (49%), Gaps = 11/578 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + A + E+ + + DI+ ++ + + +P + Sbjct: 137 LSIRSDITARKQMEDELKRSEEKYRIIAENTSDIISIINLDGEFLYLSPSHKRV--WEHT 194 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 I N +I +DRD F + R+ E R+ N W +I P+ Sbjct: 195 VPDEEIHNLFEWIVEDDRDIFAYAIQHAFSTRKE-YMVECRINTQRNDVIWTESKINPIM 253 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G++ + + I D+T++K+S E I A+ D LT +PNR+ ++ +L+ + + + Sbjct: 254 DEEGNVTKLLLITRDVTDRKQSEETIHHLAYHDALTDLPNRRMYVQQLSKEMMQAKRFQS 313 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V+ +D+D++K +ND G VGD +L+ ++R+ LK D++ARL G+ F I+ Sbjct: 314 -SLAVLFLDLDRFKDVNDSFGHDVGDMLLIEASKRLQACLKPGDVVARLGGDEFTIMQNQ 372 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + + A + + P L V+ SIG A + ++LK A+ A+Y Sbjct: 373 LLDRNEATELAEQIMYQLQRPFELDGHVFNVSCSIGIALYPQDGDNPEDLLKRADTALYT 432 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 K RG N + F S +R++++ ++ A+E + + Y P I + + G+EAL Sbjct: 433 VKSRGKNGYDFFDPSMEAKSLERILMENEMRKAIEQEQFQIYYQPKIDIATSAMTGMEAL 492 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G I + F+ IAEE MI A+ ++L++ + +W DQ + + +N++ Sbjct: 493 VRWVHPELGIIPPNRFIPIAEETGMILALGEWILKQACKQNKNWHDQGYT--LKVSVNLS 550 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ + +L E ++ ++ +T SP ++L +ES+ + E + +L ++R IGI +++D Sbjct: 551 ARQIYQKDLVEMIKDILQETKLSPHWLELEITESIFVK-MEEATAVLQQIRDIGIQISID 609 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S SY+ +P DT+K + S + AI+++I+ +A+++ +IA+ I Sbjct: 610 DFGTGYSSFSYIKSLPVDTIKIDASFIRDIHHNQESQAIVKAIVTIAQSLNMNVIAEGIE 669 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L GCD+ Q + PL + +LL++ Sbjct: 670 LHDQVAALKENGCDHGQGYLFSKPLPTDDFDQLLRQEL 707 Score = 69.2 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRT 466 A+ S I+ D + I + G L H + F+ Sbjct: 36 KYALDQS-TILAITDHKGIILRANEQFCRISKYERSELIGNDHRILNSGYHP--KSFFKE 92 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + + E R A D ++W+ I P N G+I +Y+ I +DIT +K+ Sbjct: 93 MWSCIRSGQ--VWRGEIRNCAKDGSYYWVDTTIVPFKNQAGEIYQYLSIRSDITARKQME 150 Query: 527 EG 528 + Sbjct: 151 DE 152 >gi|222054122|ref|YP_002536484.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] gi|221563411|gb|ACM19383.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] Length = 709 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 152/580 (26%), Positives = 281/580 (48%), Gaps = 15/580 (2%) Query: 385 TVIQHVLATGYFSQGIFSDG---ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 VI+ L Q + R S AV S + D + P + G + Sbjct: 122 AVIKECLECSRLEQQLREQEVFIRRLSRAVEQSPVSIMITDTSGNIEYVNPRFTKLTGYS 181 Query: 442 SGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G + L +D ++R + + G EF R D ++W++ I Sbjct: 182 LQEAAGNKPSMLKSGQSPDD--DYRRLWEIISSG--GEWWGEFHNRKKDGTYYWVLTSIS 237 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ + + I +I DITE+K++ + I A+ D LTG+PNRQ F + + L + Sbjct: 238 PIIDGDNHITHFIAFQEDITERKQAEDTIKQMAYYDALTGLPNRQLFNELMHLALAQAQR 297 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGI 619 L ++ +D+D++K IND LG VGD++L + R+ E + D +AR G+ F I Sbjct: 298 HGRL-LAILFLDLDRFKVINDTLGHGVGDELLKAAALRLRECCRRDIDTVARRGGDEFII 356 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L ++ + A + S L + E+ V+ IG + + + ++KNA++ Sbjct: 357 LLPDLDSVQEAVRVAQKIIVSFNRLFTLPDIELFVSTCIGISIYPDDGKDAETLIKNADM 416 Query: 680 AMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK +G N + + R+ ++ DL A++N E L Y P I + IV Sbjct: 417 AMYRAKEQGRNRYHLYTSSMDEQALQRLTMENDLRRALQNGEFLLYYQPKINITSGRIVC 476 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W HP+ G +S ++F+ +AE++ +I + ++L R SW++ PP+ + Sbjct: 477 FEALVRWQHPEIGLVSPNQFIPLAEDIGLIVPLGQWVLRAACRQNKSWQEMN-YPPMRVA 535 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N + K L + ++ ++++ P +++ +E+V++ N +++ L RL +GI Sbjct: 536 VNFSPKQFLQPMMVNMVEQVLAEEDMDPRWLEMEVTENVMLQNVDKTIDTLNRLNNLGIH 595 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIA 915 +++DDFGT S LSY+ +P T+K + S ++ + AI ++I MA+++ +IA Sbjct: 596 ISIDDFGTGYSSLSYIKKLPIQTLKIDQSFVSDIDTNKDDAAIATAVINMARSLRLNVIA 655 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + +K L+ + C +Q + P+ + LLK Sbjct: 656 EGVETVEQLKMLSDLDCQEMQGYLFSKPVSAEEVTHLLKS 695 >gi|269928610|ref|YP_003320931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphaerobacter thermophilus DSM 20745] gi|269787967|gb|ACZ40109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphaerobacter thermophilus DSM 20745] Length = 760 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 167/700 (23%), Positives = 306/700 (43%), Gaps = 25/700 (3%) Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + + +A AI ++ + + R L + + +T I++ Sbjct: 50 LLLPSRPLHVLGVALVATAAIGIGIAVWLLPWGSWSRRAPLTLVPVAFTLIAIHNYFARD 109 Query: 335 ERAVL-----LIPAWILI---------FIWFIGLWMAITKRLDNDIIQPALVGGLVLI-V 379 E A + WI + F+ + + + I AL + V Sbjct: 110 EPARFGLFFIVTFTWIGLACPRWTSLPFVPLMIVAYVTPLVVTGTSIATALSAAVCTAPV 169 Query: 380 ILIGFTVIQHVLAT-GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ I V A + + R V + D+V +P I +L Sbjct: 170 CVLVAEAIAWVGARLRVAQRSLRESEVRFRSLVQHASDVVAVLGPDGTARYVSPAIQHVL 229 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + G + IH +D + R L V R +FR R AD + ++ Sbjct: 230 GYRPEDLIGT--SVFDRIHPDDLPHARAQLTEIVLGRGAMPPTQFRYRRADGSWVYVEAT 287 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + N + + A DI+E+K+ + ++ A+ D LTG+PNR RL L + Sbjct: 288 ATNLLD-NPAVGGIVINARDISERKRFEKELVHQAYHDPLTGLPNRVFLQRRLADSLAQA 346 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 A + R ++ ID+D +K IND LG GD VL L +R+ ++ D+ AR G+ F Sbjct: 347 AR-ERTRVALLFIDLDNFKLINDSLGHDAGDRVLSELGKRLLGCIRCGDMAARFGGDEFM 405 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 +++ + A + ++A P + E+ +T SIG A ++++NA+ Sbjct: 406 VLINGTPGTDAALAAADRLAATLAEPFVVDGHELVITTSIGVALGGDPDDRPEDLIRNAD 465 Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AM+ AK G F + +R+ ++ DL +E E + Y P++ + V Sbjct: 466 AAMHRAKLLGKARRVVFDPAMYAQAVERLALERDLRHGLERGEFQIYYQPVLDVRTRRPV 525 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIF 795 +EAL++W HP+ G IS EF+ IAEE +I + ++L R + +WR P Sbjct: 526 EVEALVRWHHPERGLISPGEFIPIAEETGLIVPLGHWVLAEACRQLAAWRTAFPDCAPSA 585 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++++ L + ++++T P+ +KL +ESV+M + + L L+++G Sbjct: 586 VSVNLSARQFRHPSLTADIAQILAETGLPPASLKLEITESVMMDDTASTLEALRDLKQLG 645 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913 + L +DDFGT S LSYL P D +K + S G + + A++ ++I A + + Sbjct: 646 VQLAVDDFGTGYSSLSYLKRFPTDAMKIDRSFARGLDQSREDQALVEAMIAAANALRLQV 705 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + E ++ L R+GCD +Q A P+ + + + L Sbjct: 706 TVEGVETEEQLEFLERVGCDLVQGFLFAPPMPPDEVARFL 745 >gi|108805572|ref|YP_645509.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rubrobacter xylanophilus DSM 9941] gi|108766815|gb|ABG05697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rubrobacter xylanophilus DSM 9941] Length = 1101 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 163/580 (28%), Positives = 280/580 (48%), Gaps = 10/580 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD--WDIVRDRVTTTPDIATILG 439 + T ++ V + + E+ V +V+ D V ++P I G Sbjct: 505 VRITAMRDVTERKRAERELREAQEQYRRLVEQLPAVVYIDRLDETSSNVYSSPQTEKIFG 564 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + + +H DR++ + R L+ E+R+ A D + W+ Sbjct: 565 YSPQEWASDPEMFPRVLHPADRESVLAA-HARANARGEPLELEYRLIARDGRVVWVRDSS 623 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + ++ G+ G+ DITEQK ++ AF D LTG+PNR F+DRL L + Sbjct: 624 IVLRDAEGNPRWRQGLMVDITEQKNLEARLVHLAFHDPLTGLPNRALFMDRLEHALARAG 683 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ V+ ID+D +K +ND LG GD +L + RR+ + D +ARL G+ F + Sbjct: 684 RSGDV-LAVLFIDLDNFKFVNDSLGHEAGDRLLALVARRLSGATRPGDTVARLGGDEFTV 742 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + A A + + + P + RE+ V+AS+G + T+ + E+++ A+L Sbjct: 743 LLEGIADGGEAARVAGRVAEVLREPFRVAGRELFVSASVGISVSTAGSGSVEELMRGADL 802 Query: 680 AMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G V F +S DR+ ++ DL AV EL L Y P++RL D +V Sbjct: 803 AMYEAKREGKDRYRVFDFGMSRTAHDRLRLENDLRRAVGRDELRLYYQPVVRLGDGRVVA 862 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W+HP+ G + F+ +AEE MI I +LE WR Q P + + Sbjct: 863 FEALLRWEHPRRGILLPDRFVPLAEETGMIVGIGRRVLELACSRAAGWRRQ--EPSLAVS 920 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +NI+++ L+ + E + ++ +T P + L +ES M P + L RLR+ G+ Sbjct: 921 VNISARQLVRPDFVEEVGRILQRTGLEPEGLVLEVTESAAMDEPGEAARALQRLRERGVR 980 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIA 915 L LDDFGT S LSYL +P +K + S + G + ++ +I +++ + +A Sbjct: 981 LALDDFGTGYSSLSYLRRLPVCFLKIDRSFVEGLGGDSGSGVLVGGVIALSRELGFEPVA 1040 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + I ++ L +GC+ Q + ASP+ + +L++ Sbjct: 1041 EGIETPGQLERLLELGCELGQGYYFASPMPEGAAGELVRS 1080 Score = 53.0 bits (126), Expect = 3e-04, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%) Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + ILG + G L + R+ R + + YE Sbjct: 427 RGRILEVNRAYTEILGYEPEEVVGAP--VLGRVVPEHREIARRRIAAGYDRP-----YEV 479 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 D + + IR R + G +R + D+TE+K++ Sbjct: 480 EAVRKDGRRVHLEIRGR-QATYRGRRVRITAM-RDVTERKRA------------------ 519 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVID 572 L + P V+ ID Sbjct: 520 ----ERELREAQEQYRRLVEQLPAVVYID 544 Score = 46.5 bits (109), Expect = 0.022, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 52/175 (29%), Gaps = 14/175 (8%) Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 +A + ++ L+ + ++ T + +A + + Sbjct: 234 ALAGECLASVAEFGEVVLELHLSPLLREGRVEGVIGVATDVTGRVA---AERRLRESESE 290 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FR 465 D V D + + ++L A G + + + ++ F Sbjct: 291 LRAVFAAMTDAVLVLDREGRYLRVSSADPSLL-YAPAE--GRVGKTVHEVLPREQARLFM 347 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + R + E+ + + W R+ PM R + +A DIT Sbjct: 348 DAIRRALEGGR-TIGVEYELPTG-GRSRWFSARVSPMPGG-----RVVWVARDIT 395 Score = 40.7 bits (94), Expect = 1.2, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 50/185 (27%), Gaps = 15/185 (8%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVI---LIGFTVIQHVLATGYFSQGIFSDGE 405 + I + + ++ L + + + + + A + + Sbjct: 113 VGVISVARPEGGFGERELQVLVECAELAAVALENARLYAEAREELAARRRAEEALRRSEA 172 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R V GS ++ D +GL + G I + Sbjct: 173 RLRAVVAGSPVTMFALDPSGVFTLAEGRGLERMGLLPEEVVGRSA--FEVIGGD--PRLA 228 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L + EF + + + P+ G + IG+A D+T + + Sbjct: 229 ADLRRALAGECLASVAEF-------GEVVLELHLSPLL-REGRVEGVIGVATDVTGRVAA 280 Query: 526 LEGIL 530 + Sbjct: 281 ERRLR 285 >gi|158333247|ref|YP_001514419.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] gi|158303488|gb|ABW25105.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 754 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 155/598 (25%), Positives = 277/598 (46%), Gaps = 8/598 (1%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 +Q + G + + + + Q + R + D+VW + Sbjct: 129 RSHLQDEQLIGQNRTLRAMNAQLQGEIDERQLVQQKLQESETRLESILNSLDDVVWSAAV 188 Query: 424 VR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + P + G S WL +H DR D + G L E Sbjct: 189 EEFQLLYLNPAAEAVHGYPVSSFLSNPDLWLEVVHPADRHQMIHFFDQLL--VAGSLNIE 246 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 +R+ D + W+ R ++ G R GI DITEQK++ ++ +AF D LTG+P Sbjct: 247 YRILRPDGEIRWLKNRGHVITGDQGRPHRLDGIIYDITEQKRAQAQLIHDAFHDELTGLP 306 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR ++R++ L + + ++ ID+D++K IND LG VGD +LV++ + Sbjct: 307 NRNLMMERISQSLKRQHRTSDYQFALLFIDLDRFKIINDSLGHIVGDQLLVAIAHLLENC 366 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 ++ D +ARL G+ F I+L A + +++ P + E + +SIG A Sbjct: 367 VRTSDTVARLGGDEFTILLDGIQGIEDAIHVAERILETLKSPFQVGEHSVFTGSSIGIAY 426 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSEL 720 + + +L++A++AMY AK G F + ++ DL AV+ E Sbjct: 427 NSVQYDDPTLLLRDADIAMYRAKSLGKGCFVVFSPEMHAQTLSLLKLERDLRSAVDRQEF 486 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y PII L ++ +E L++W HP G + SEF+ +AEE +I I ++L+ + Sbjct: 487 VLYYQPIIDLQSGDLTDVEVLVRWQHPDRGLVMPSEFIPLAEETGLIVEIGQWVLQEACQ 546 Query: 781 DIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + ++ Q + +N++S+ L D + + ++S++ +KL +ES++M Sbjct: 547 TLRDYQQQFASATELKFSVNLSSEQLQDPNFIQTVDRVLSQSGLDGRYLKLELTESMLMS 606 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897 + E+ L +LR I+++LDDFGT S LSYL P DT+K + S ++ K Sbjct: 607 HEEKHIKTLQQLRDRSITISLDDFGTGYSSLSYLYRFPLDTLKIDQSFVSRMISEPKDAE 666 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ +II +A+ + +IA+ I E ++ L ++GC+ Q + P+ + + L+ Sbjct: 667 IVNTIISLARTLNMDVIAEGIETEEEVLHLKKLGCERGQGYWFSPPMSQEKLEEHLQA 724 >gi|322419792|ref|YP_004199015.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320126179|gb|ADW13739.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M18] Length = 1097 Score = 582 bits (1501), Expect = e-163, Method: Composition-based stats. Identities = 162/669 (24%), Positives = 299/669 (44%), Gaps = 24/669 (3%) Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF-IGLWMAITKRLDN 364 + + + + + + + R+V + + + M + Sbjct: 293 RLTGWTIVATSLLAILAGSMVAFFTSRSITRSVKGCMDFAGRLAGGDLAVRMEAGGDNEF 352 Query: 365 DIIQPALVGGLVLIV---ILIGFTVIQHVLATGYF------SQGIFSDGERQSLAVLGSG 415 + AL + +L + A + ++ A+ S Sbjct: 353 GRLATALNCMADELQGHRLLQEERTAELAGANSALETEIAEHRDAEEALRQRQRAIDSSS 412 Query: 416 DIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSF 471 + + D + + P I G A+ + G L DR+ ++ Sbjct: 413 NGIMITDALELDHPIIYVNPAFERITGYAASEVLGRNPRLLCS---GDREQLGLEVIRVA 469 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + R E R D W + + P+ N+ G++ Y+GI NDITE+K+ E + Sbjct: 470 LCELREG-HAELRNYRKDGSLFWNALSVSPVLNAAGEVTNYVGIVNDITERKRYEEQLEY 528 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 + D LTG+PNR DR+ L + + V ID+D +K IND LG +GD + Sbjct: 529 QSNHDGLTGLPNRNLLGDRIGQALTYAERYQR-QTAVFFIDLDHFKFINDSLGHDMGDKL 587 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 L RR+ E ++ D +AR G+ F I+L S A A ++ ++ P + E E Sbjct: 588 LQIAARRLSECVRSIDTVARHGGDEFVIVLSDLAVSEDAAKVARKIQDAVCRPYQIGEHE 647 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKE 709 + V+ S G + + + +LKNA++AMY AK G N+ + + R+ +++ Sbjct: 648 LVVSCSTGISLYPKDGSDAQVLLKNADVAMYRAKQCGRNNFQFYTGDLNDIVLARLTMEK 707 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L A+E E + Y P + L+ I G+EAL++W P+ G IS + F+ +AEE +I A Sbjct: 708 YLRRALERDEFLVHYQPKVDLLSGRITGMEALVRWQSPELGFISPASFIPLAEETGLIVA 767 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I ++L +W+D PP+ + +N++ + +L + + + +T +P I+ Sbjct: 768 IGEWVLRTACAQNKAWQDDGL-PPMVVAVNLSPRQFRQEDLADTVHRIAEETGLAPRYIE 826 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L ES++M + + + +L L+++G+ LT+DDFGT S LSYL PFD +K + S + Sbjct: 827 LEVVESLLMDDVDGAVAMLDALKELGVQLTMDDFGTGYSSLSYLKRFPFDMMKIDQSFVR 886 Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 AI+R++I +A + ++A+ I E + L + CD +Q + + P+ Sbjct: 887 DITRDPGSAAIVRTVISLAHTLNLRVVAEGIETEGQLGYLRGLACDEMQGFYFSRPVPAA 946 Query: 948 SILKLLKER 956 ++L+++ Sbjct: 947 EFEQMLRDQ 955 >gi|296133232|ref|YP_003640479.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola sp. JR] gi|296031810|gb|ADG82578.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola potens JR] Length = 798 Score = 582 bits (1500), Expect = e-163, Method: Composition-based stats. Identities = 149/568 (26%), Positives = 270/568 (47%), Gaps = 7/568 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + + + V + I+ W + + G + + G Sbjct: 206 DSKQALEELRQERDFSQSLVDNARTIIMLWAMDGTITLFNKYAEELTGYTAAEVIGKK-- 263 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + L E A D ++ ++ G L Sbjct: 264 WWEIFTPKEIKPAIPELLERFQQGEVIETGEHPWIAKDGGRIEILWTHTLSYDAEGKPLA 323 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 I + DIT++K++ E I A+ D LT +PNR F DRL L + + L VM I Sbjct: 324 IISMGIDITDRKRAEEIINHMAYHDPLTDLPNRALFNDRLKLALAHAKRNKQL-LAVMFI 382 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG A+GD VL + +R+ E L+ D +AR+ G+ F +I +A Sbjct: 383 DLDRFKLINDTLGHAMGDRVLKDVAQRLTECLREGDTVARIGGDEFILIFPQIAKEQDVA 442 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A+ + +++ P + +E +T SIG A + + ++KNA+ A+Y AK +G + Sbjct: 443 KIALKIIETMKRPFKVEMQEFHLTTSIGVAIYPHDGQDAETLVKNADSALYLAKEQGNTY 502 Query: 692 V-ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ +R+ ++ LC A+EN E + Y P + ++ +I G+EAL++W HP+ G Sbjct: 503 QLYTPSMNDKAYERLNTEQALCKALENDEFEVHYQPQVNIITGQITGMEALVRWKHPEKG 562 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ IAEE +I I ++L +W+D PP+ +++N++++ L L Sbjct: 563 LVYPGDFIQIAEETGLIIPIGEWVLRTACLQSKAWQDA-GYPPVTVVVNLSARQFLQQNL 621 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 E + ++ +T P ++L +E V+M + + + +L L K+GI + +DDFGT S L Sbjct: 622 VETITRILQETGMDPKWLELEITEGVIMKDVDYTVKVLQELAKMGIRIAIDDFGTGYSSL 681 Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P +T+K + S + G S + AI+ +II +A+N+ ++A+ + E L Sbjct: 682 NYLKRFPINTLKIDRSFIQGVVSDIQDAAIVSTIIVLARNLNLKVVAEGVETEEQYLFLR 741 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956 C +Q + P+ LLK + Sbjct: 742 GKQCYDMQGYWFSRPVPAEEFEGLLKRQ 769 Score = 38.0 bits (87), Expect = 8.1, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 50/163 (30%), Gaps = 19/163 (11%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---------VT 429 L+ + ++V A ++ E S + + +R+ Sbjct: 65 GFLLYLLMRRYVSALAQSEMELYVREELFRTVQETSHEGFMIFTSIRNEQRKIIDFEVAY 124 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 + A I+G ++ G + F ++ ++ +R+ + Sbjct: 125 CNSEAARIMGFRVENIIGHSLLKAIPVFKE-NGLFEIFVNIVETGVSKHFEHSYRL---N 180 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 W + +G + +DIT+ K++LE + Sbjct: 181 GCNLWFRNTA--VKAGDG----FAVCFSDITDSKQALEELRQE 217 >gi|291614045|ref|YP_003524202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291584157|gb|ADE11815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 694 Score = 582 bits (1500), Expect = e-163, Method: Composition-based stats. Identities = 149/698 (21%), Positives = 293/698 (41%), Gaps = 30/698 (4%) Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332 L + + Y+ + +A+ ++ V A + +T V Y Sbjct: 8 LGTDERNGVHHYLLPVVLMTLALWVRLT--IAPVQAGLQYLTFFPAVALSCILGGYRAG- 64 Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 AV++ +I + + + +++ F V Sbjct: 65 --LVAVIIGATCATYIFTPPYYSFSIESF-QASLWSNTVFF---MDGLIVSFAVEAMHRY 118 Query: 393 TGYFSQGIFSDGE-----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 ++ + + E R + S + + D + G + + G Sbjct: 119 RQKYASELKTAEESAAWLRIASVAFESQEGIMITDSKGRILRVNKAFTESTGYSVDEIIG 178 Query: 448 -PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 R H D + + +S R G Q E R + + + + I + +++ Sbjct: 179 QTPRLLKSNRH--DSAFYAAMWESI--TRSGSWQGEVWDRRKNGEIYPKWLSITAIKDAD 234 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G++ Y+G DI+E+K + E I AF D LT +PNR+ DRL + + + Sbjct: 235 GNVTNYVGTHTDISERKTAEEEIRNLAFYDPLTQLPNRRLLQDRLQHAMSSTERNRKG-G 293 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ +D+D +K IND LG GD++L + +R+ ++ D ++R+ G+ F ++L +N Sbjct: 294 ALLFLDLDNFKSINDTLGHTAGDNLLQQVAQRLTSCVREDDTVSRIGGDEFVVMLEYLSN 353 Query: 627 S-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + + P L +E+ T SIG + ++ ++ K A++AM Sbjct: 354 EVLEAAAQAETIGEKIIAELNQPYYLGGQELYNTPSIGITLFDDNRNGYEDLFKQADIAM 413 Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N + F + RV ++ +L A+++ + L Y + G+E Sbjct: 414 YQAKKSGRNTLRFFDPKMQGSINTRVALERELRKALDSQQFRLHYQIQVD-SSGLPFGVE 472 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HP+ G + EF+ +AEE +I I ++LE + + W + + +N Sbjct: 473 ALIRWLHPERGLVPPFEFISLAEETGLICPIGEWVLETACKQLKLWERHELTQDLIMSVN 532 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++K ++ + I + +PS +KL +ES+++ E + + L+ +G+ + Sbjct: 533 VSAKQFYQSDFVVKVLEAIHRHDVNPSLLKLELTESMLLDKIEDTISTMNALKAVGVRFS 592 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S L YL +P + +K + S + AI+ +II MA ++ +IA+ Sbjct: 593 LDDFGTGYSSLQYLKRLPLNQLKIDRSFVRDIAVDSSDEAIVSTIIAMAHSLNLDVIAEG 652 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + L GC + Q P+ + +LK+ Sbjct: 653 VETDEQKQILLNKGCIHYQGYLFGKPVPIEQLEVMLKQ 690 >gi|327538467|gb|EGF25131.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopirellula baltica WH47] Length = 739 Score = 581 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 166/587 (28%), Positives = 294/587 (50%), Gaps = 22/587 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + I L Q + ER +L G+ D +WDW++V + +P +++GL Sbjct: 163 VTIARISTQLQLKSALQRLRQSEERYALTARGTNDGMWDWNLVTGELYLSPRWRSMVGLD 222 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 S W+ IH DR + L++ + + E R++ + WM+ R Sbjct: 223 GVSWTPHGSEWMDLIHHEDRRRVQLDLEAHLCGETDHFETELRMQDGHQTYRWMLCRGLA 282 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + +S+G R G DITE K + D LTG+PNR F DR+ +D A + Sbjct: 283 VKDSHGTAYRIAGSLTDITEGKVA----------DALTGLPNRMLFNDRVQRCVDHQARN 332 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGII 620 R V+ +D+D +K +ND G GDD LVS+ R+ L+ D I+AR+ G+ F ++ Sbjct: 333 PQNRFAVIFMDVDDFKLVNDHFGHDAGDDFLVSIASRLDTSLRKSDAIIARMGGDEFAVL 392 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS------SEML 674 L + + + A+ + + P + +REI AS+G +S E+L Sbjct: 393 LENIRHVDEAVAVAMRLHDKMRAPFPVGDREILTRASMGIVVSEFDPESSVPQATGEELL 452 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMD 732 A+ AMY AK++ F + + ++ L ++E EL L+Y P+++L D Sbjct: 453 VRADTAMYFAKNQSELPYAIFNDDMLAENMLRLELGSQLRHSLERDELALLYQPMVQLCD 512 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + G EAL++W+HP+ G +S + F+ IAE +I I ++L + + + W+ + Sbjct: 513 GKTAGFEALLRWEHPEHGTVSPNTFIPIAESNGLIIEIGKWVLRKACQQAMQWQKEFGR- 571 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 PI I +N++ + L E + + +T P +KL +ES +M +PE + LL +LR Sbjct: 572 PIMISVNVSVRQLSSTGFVEAVTETLEETKLQPECLKLEVTESFLMQDPESTIELLHQLR 631 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 +IG+++ +DDFGT S LSYL +P D +K + S + +EK +++RSI+ +AK++E Sbjct: 632 RIGLTIGIDDFGTGYSSLSYLHRMPLDILKVDRSFVESMFDSEKNASLIRSILALAKSLE 691 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++A+ + ++ L +GC ++Q + + P+ +L+ R+ Sbjct: 692 LNVVAEGVETLAQLQRLQDLGCHFVQGFYFSQPVKPECASELINHRW 738 >gi|32472401|ref|NP_865395.1| hypothetical protein RB3251 [Rhodopirellula baltica SH 1] gi|32443637|emb|CAD73079.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 739 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 166/587 (28%), Positives = 295/587 (50%), Gaps = 22/587 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + I L Q + ER +L G+ D +WDW++V + +P +++GL Sbjct: 163 VTIARISTQLQLKSALQRLRQSEERYALTARGTNDGMWDWNLVTGELYLSPRWRSMVGLD 222 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 S W+ IH DR + L++ + + E R++ + WM+ R Sbjct: 223 GVSWTPHGSEWMDLIHHEDRRRVQLDLEAHLCGETDHFETELRMQDGHQTYRWMLCRGLA 282 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + +S+G R G DITE K + D LTG+PNR F DR+ +D A + Sbjct: 283 VKDSHGTAYRIAGSLTDITEGKVA----------DALTGLPNRMLFNDRVQRCVDHQARN 332 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGII 620 R V+ +D+D +K +ND G GDD LVS+ R+ L+ D I+AR+ G+ F ++ Sbjct: 333 PQNRFAVIFMDVDDFKLVNDHFGHDAGDDFLVSIASRLDTSLRKSDAIIARMGGDEFAVL 392 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS------SEML 674 L + + + A+ + + P + +REI AS+G +S E+L Sbjct: 393 LENIRHVDEAVAVAMRLHDKMRAPFPVGDREILTRASMGIVVSEFDPESSVPQATGEELL 452 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMD 732 A+ AMY AK++ F + + ++ L ++E EL L+Y P+++L D Sbjct: 453 VRADTAMYFAKNQSELPYAIFNDDMLAENMLRLELGSQLRHSLERDELALLYQPMVQLCD 512 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + G EAL++W+HP+ G +S + F+ IAE +I I ++L + + + W+++ Sbjct: 513 GKTAGFEALLRWEHPEHGTVSPNTFIPIAESNGLIIEIGKWVLRKACQQAMQWQEEFGR- 571 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 PI I +N++ + L E + + +T P +KL +ES +M +PE + LL +LR Sbjct: 572 PIMISVNVSVRQLSSTGFVEAVTETLEETKLQPECLKLEVTESFLMQDPESTIELLHQLR 631 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 +IG+++ +DDFGT S LSYL +P D +K + S + +EK +++RSI+ +AK++E Sbjct: 632 RIGLTIGIDDFGTGYSSLSYLHRMPLDILKVDRSFVESMFDSEKNASLIRSILALAKSLE 691 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++A+ + ++ L +GC ++Q + + P+ +L+ R+ Sbjct: 692 LNVVAEGVETLAQLQRLQDLGCHFVQGFYFSQPVKPECASELINHRW 738 >gi|189426377|ref|YP_001953554.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189422636|gb|ACD97034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 965 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 146/585 (24%), Positives = 285/585 (48%), Gaps = 10/585 (1%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 +VL + + ER + V D+V D+ + + +P Sbjct: 373 VVLDGREHLLESFVDISRRKQVENSLKESEERYRMLVENQADLVIKTDMTGNLLFVSPSF 432 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 + G + G + + ++ + + E+ + + W Sbjct: 433 CKLFGQTEEKLLGKALLPVIML-PEQLATA-AGMEQMICSDTSYYR-EYLSPTREGK-RW 488 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + +R + N +G IG+ DIT++K + I A+ D +TG+PNR DRL Sbjct: 489 IGWALRCIFNQSGQAEAIIGMGRDITDRKTAESTIEQLAYHDPVTGLPNRTLLHDRLQLA 548 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 ++ + D ++ +D+D++K IND LG A+GD +L + R+ + ++ D +ARL G Sbjct: 549 INRAERDSQG-VAILFLDLDRFKAINDSLGHAMGDQLLRLVGNRLLDCVRSSDTVARLGG 607 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F +++ + +N + + + + + P + + E+ ++SIG + + + E+L Sbjct: 608 DEFVVLISALDNDHAVGSVVMKILEQLCEPYQIDDHEVYTSSSIGISLFPRDGRDAEELL 667 Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 KNA++AMY AK G N F + ++R++++ + A+E E +LVY P + L Sbjct: 668 KNADMAMYQAKEAGRNTCHFFSPELNMRATERLLLESTMRRALEREEFFLVYQPQMELRS 727 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I G+EAL++W HP G + + F+ IAEE +I + ++L R + W+ + P Sbjct: 728 GHIAGIEALLRWRHPDLGVVPPNNFIPIAEETGLIVPLGEWVLAEACRQAVRWQQE-GQP 786 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 P+ + +N++++ L ++ ++ +T P+ ++L +ES VM NPE + L L +L+ Sbjct: 787 PLRMAVNVSARQFRQRNLGLRIEKILMETGLDPALLELELTESAVMENPEEAILTLRQLK 846 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 K+GI+L++DDFGT S LS+L + P D +K + S + I +II +A +++ Sbjct: 847 KMGITLSIDDFGTGYSSLSHLKHFPIDRLKIDRSFVKHVTRDHNDATIAEAIIALAHSMK 906 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 T++A+ I ++ + + CD +Q +++ P+ LK Sbjct: 907 LTVVAEGIEHSEQMEFMHQRHCDTMQGYYLSRPVTAEEFGTFLKR 951 >gi|317127773|ref|YP_004094055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] gi|315472721|gb|ADU29324.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] Length = 1016 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 156/611 (25%), Positives = 284/611 (46%), Gaps = 17/611 (2%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 + LV + +GFT+ +L I + E+ + + D + Sbjct: 409 WGFIAIVGPIDDLVLISAADITQVGFTISAALLERDELFLQIQTIAEQLEIVSSTTNDGI 468 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 WDWDI+ ++VT I + ++L +H D N Y Sbjct: 469 WDWDIITNQVTWNVRSLDIFSSVGEPLPTDSESFLNLVHPEDYYNVIESFKMH-QYEGSS 527 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 L+ EFR++ W+ + + + NG +R IG +I+E+K+ + I+ AF D L Sbjct: 528 LKMEFRIQGEKEGEMWVYLTGDSIRDENGQAIRIIGSITNISEKKQQEKQIMHLAFHDGL 587 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+PNR+ RL + + N + +++ID+D++K IND LG GD+++ + Sbjct: 588 TGLPNRRLLRSRLELAMTDADRY-NYKLGLLLIDLDRFKVINDTLGHQAGDELIQKVADV 646 Query: 599 I----------GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 + + +ARL G+ F I+L + + A + + P + Sbjct: 647 LELTMRSPDTHSRAKQEHTTVARLGGDEFIILLTHITDVSDLQASANLIIEKFKEPFFIQ 706 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVM 706 +++ +ASIG + + + NA++AMY AK G N +E + +R Sbjct: 707 NQDVFTSASIGISVYPDHGRDYDSLTGNADIAMYRAKENGKNQMEMYSSEINTLTMERFQ 766 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A+E E L Y P L + E++G+EAL++W+ G +S EF+ +AEE + Sbjct: 767 MENQLRKALEREEFVLHYQPQFHLENNEVLGIEALLRWNSSDRGIVSPMEFIPLAEETGL 826 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I ++L+ R W DQ + P I + +NI+++ L + + + +++++ T Sbjct: 827 IIPIGYWVLKEACRQNKRWMDQGHRPKI-VSVNISARQLQEKDFVQAVKSILEDTQLPTQ 885 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 + L +ES + N + S +L L ++GI + +DDFGT S L+ L +P +K + S Sbjct: 886 YLCLEITESTAIKNIDISMNMLKELGELGIKIAIDDFGTGYSSLAMLKQLPISNIKIDKS 945 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + AI+R+II MA ++E T+ A+ + E L + C+Y+Q + PL Sbjct: 946 FIRDMDVDKDDGAIVRAIIAMAHSLELTVTAEGVETEDQKNILLQEKCNYLQGYLYSKPL 1005 Query: 945 GFNSILKLLKE 955 L+ ++E Sbjct: 1006 PAEECLRFVQE 1016 >gi|83310313|ref|YP_420577.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82945154|dbj|BAE50018.1| Predicted signal transduction protein [Magnetospirillum magneticum AMB-1] Length = 880 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 157/576 (27%), Positives = 279/576 (48%), Gaps = 17/576 (2%) Query: 392 ATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 A + + +LA + S D + D + P + G + + G Sbjct: 301 ALKERDAALLRSRKDLNLARKVIEASLDGIMIVDSTQKIEFVNPAFTHMTGYTAEEIIGK 360 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 N L H + + F + + + + Q E R + + + + I + + GD Sbjct: 361 NPNVLKSGHHD--ETFYKHMYTVLEAQ-DYWQGEIWNRRKNGEIYPEWLTINVIRDDTGD 417 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I +Y I +DITE+KK+ E I A+ D LT +PNR+ F DRL + + + + Sbjct: 418 ITQYAAIFSDITERKKTEERIKNLAYFDVLTALPNRRLFTDRLQIAIANAHRHGQ-QLAI 476 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 M +D+D +K+IND LG VGD VLV RI ++ D +ARL G+ F ++L ++ Sbjct: 477 MFLDLDLFKRINDSLGHGVGDQVLVETAARISHCVREGDTVARLGGDEFTVLLPELDHLE 536 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 +A A + + P + + E+ VT SIG A + T ++KNA+ AMY AK G Sbjct: 537 DVAKLAERVIAHVKQPFLVDDNELYVTTSIGIAVYPEDGTTVEALIKNADTAMYRAKDLG 596 Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N + + +++ +R+ ++ L A+ E LVY + D + G+EAL++W H Sbjct: 597 RNSYQLYTAAMNARSFERLTMESSLRHALTREEFRLVYQVKVDSEDGRMSGVEALVRWHH 656 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G +S +F+ +AE + +I I ++L R W D +PP+ I +N++++ + Sbjct: 657 PEMGLVSPVDFIPLAEAMGVISDIGEWVLRTACRQCKHWMD-LGLPPVRIAVNVSAQQFV 715 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 + ++ E + + +T P ++L +E+V+M + +L LR +G+ +++DDFGT Sbjct: 716 ETDVPEVVARALRETGLPPQYLELELTETVLMQRVDEVVAVLKSLRAMGVRISIDDFGTG 775 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS-------TEKRIAILRSIIPMAKNIETTIIAKDIY 919 S LSYL +P D +K + S + TE I+ +II +A N++ IA+ + Sbjct: 776 YSSLSYLKRMPIDALKVDRSFVNDIFDGQSKVTEDGAEIVSTIINLAHNLKLKAIAEGVE 835 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q ++ P+ ++ L Sbjct: 836 TPEQAEFLRSKGCDEVQGYLISRPVSGEDLISLFDR 871 >gi|16331091|ref|NP_441819.1| hypothetical protein sll0267 [Synechocystis sp. PCC 6803] gi|1653584|dbj|BAA18497.1| sll0267 [Synechocystis sp. PCC 6803] Length = 1578 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 149/586 (25%), Positives = 279/586 (47%), Gaps = 14/586 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + IQ A + + ER LA+ + +D ++ + +P ILG Sbjct: 996 LSFALDAIQLDQANQRAQNQLGENEERLRLALEAANQGFYDLNLQTGQAVVSPQYGQILG 1055 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + WL IH D+ R I D ++ + R E R R Q+ W++ Sbjct: 1056 YDPQYFQETEQRWLERIHPQDQQRVREIYDQYIQGKIPRYAVECRQRTMAGQWKWLLSLG 1115 Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + +S G LR +GI D+TE+K++ I A+ D LT +PNR+ LDR L L+ Sbjct: 1116 KIVEWDSQGKPLRMLGILTDVTERKQAEAQIENLAYYDPLTALPNRRLLLDRAENALALA 1175 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + +++ID+D +K +ND G GD +L + +R+ + L+ D +ARL G+ F Sbjct: 1176 QRSKHF-GAIVLIDLDGFKTLNDARGHDSGDRLLQMVAKRLADSLRDSDTVARLGGDEFI 1234 Query: 619 IILISENNSLKIAD-----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++L + ++A +R+++A P L ++ ++ SIG + S++ Sbjct: 1235 VLLPELAHDRELAARLGLGVGEKIRQALATPFTLEAEQVQISGSIGITLFPKLNEKVSDL 1294 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 K A+ AMY AK G + V F R ++ DL A+E + + P + Sbjct: 1295 FKEADTAMYQAKKAGRDKVCLFESQMQLEVESRFALEADLRSALEQKQFQVYLQPQVD-S 1353 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 +G EAL++W+HP G I + F+ IAEE+ +I I F+LE++ + + + Sbjct: 1354 HGVWIGAEALLRWNHPGRGFIPPNIFIPIAEEIGLIGGIGDFVLEQVCQYLARLQQLGLT 1413 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + I IN++ + + ++ L++ T P R+ L +E +++ + ++ + L Sbjct: 1414 --LRIAINVSPRQFRQANFAKEIKNLLACTGVDPYRLTLEVTEGLIVEDTHQAIATMFEL 1471 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909 + +GI ++DDFGT S LSYL +P + +K + + + + + A++ +II +A+ Sbjct: 1472 QTLGIHFSVDDFGTGYSSLSYLKRLPLNELKIDRAFVQDAPQDLNNAALVEAIISVARTF 1531 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+A+ + E ++ L ++GC++ Q P+ + + L Sbjct: 1532 NLAIVAEGVETEEQVQFLAQLGCNFYQGYFYGRPMPIDEFHQKLTA 1577 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 70/214 (32%), Gaps = 28/214 (13%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDI-VRDRVTTTPDIAT 436 +L + ++++ I ER + + ++ D + + T Sbjct: 685 ALLNTVSQFLSRFLESHYTEIILERNERNYREIFNSTHEAIFIQDAHQATVLDVNQPMLT 744 Query: 437 ILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFH 493 + G + G ++ + R +E+ + D Sbjct: 745 MYGYGNKEEVIGRPIGDFSADKP---GKTEAEIEQKLRQARNAEPQMFEWLAKKQDGSLF 801 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP------NRQSF 547 W + I+P +G R + + DI+E+K++ + I + + NR Sbjct: 802 WAEVSIQPTV-IDGK-SRLLAVVRDISERKQNQQRIEYLSR------LYATLSQVNRAII 853 Query: 548 LDRLTTILDLSATDDNL---RPTVM---VIDIDK 575 +R L + D + + +++ +ID D+ Sbjct: 854 ENRERDDLFRAICDVGVAVGQFSLIWFGLIDPDR 887 >gi|56476956|ref|YP_158545.1| hypothetical protein ebA2702 [Aromatoleum aromaticum EbN1] gi|56312999|emb|CAI07644.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 1039 Score = 579 bits (1492), Expect = e-162, Method: Composition-based stats. Identities = 149/560 (26%), Positives = 253/560 (45%), Gaps = 16/560 (2%) Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 ER A+ S + D + P TI G + + G + Sbjct: 472 EERMRQAMVVFKASSQGIMTTDAQGVITSVNPAFCTITGYLAAEVIGRKSSMFK---PER 528 Query: 461 RDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + F + S V G E R +D + + I + +++G I Y+ + +D Sbjct: 529 HEATFFDAMWTSIVE--SGSWAGEVWSRRSDGDRYPQWVTITAVRDTDGRIAEYVTLFSD 586 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE+K+ + A D LTG+ NR DRL L + + ++ +D+D +K Sbjct: 587 ITERKQQEVAMWRQANFDPLTGLANRSLLQDRLDRALAHARRH-GCKVGLLFLDLDGFKW 645 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD++LV + RR+ ++ D +ARL G+ F +++ + + A + Sbjct: 646 INDSLGHDVGDELLVDVARRLNSCVRDEDTVARLGGDEFTVVVHDLADRADLGAIADKLV 705 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P L ++ S+G + +L+NA++AMY AK G N + + Sbjct: 706 AVLREPFALRGARHHISGSVGITVFPDDGDDVQTLLRNADIAMYKAKQAGKNRAQPYAPH 765 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ DL +AVE L Y PI+ +VG EALI+W HP+ G IS E Sbjct: 766 MQADALARVHLEADLRMAVEQRAFELHYQPIVDCASGALVGAEALIRWKHPERGMISPLE 825 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I ++L + R W + PP+ + +N++ + L E ++ Sbjct: 826 FIPVAEECGLIVPIGEWVLREVVRQRRDWLAR-GHPPLRLTLNVSGVQFREAGLPELVRT 884 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+++ + S + +ESV+MG E + +++ GI LDDFGT S LSYL Sbjct: 885 LLAEFGTARSSLVFEITESVLMGGSENVEARMCDIKEQGICFALDDFGTGFSSLSYLKRF 944 Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D VK + S + ++ +II MA ++ + A+ + + L +GCDY Sbjct: 945 PVDIVKIDRSFVRDCPDDRNDATLVEAIINMAHSLGLRVTAEGVESAEQREFLRALGCDY 1004 Query: 935 IQDSHVASPLGFNSILKLLK 954 +Q + PL ++ L+ Sbjct: 1005 LQGYLIGKPLAADAFEALMA 1024 Score = 70.4 bits (171), Expect = 2e-09, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 8/233 (3%) Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 + + + + ++ G G + L ++ ++ + L + Sbjct: 7 YVRQRRPLVVGIVVFLVAAMVSGVLVLGLGHPGDN--LGLSLNAAVVLLFSLLLGGLANQ 64 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L + + + A G + S A+ S + Sbjct: 65 MAQLRAHRADLQRLVAARSAEVRAREAELDRAQSVAHVG-EQQLRKLSTAIECSPASIVI 123 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D P G + + G R D + + + + Sbjct: 124 TDRSGTIEYVNPQFERSTGYTAQEVVGKNPRILKSGNRSADE---YAAMWATITH-GHVW 179 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + EF D +W I P+ +G I ++ + DIT QK++ + Sbjct: 180 RGEFENVRKDGAHYWERASIAPIRADDGMISGFVAVKEDITLQKRAERELRDR 232 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 10/149 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLAS 442 +++ + Q + R S ++ D + V G Sbjct: 338 IVLVRDLTERVRMEQALIESELRYRELFANSRVVMLVIDPVDGRIVEANAKACEYYGYDP 397 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 S+ + R+ R + + + R+ A Q + + P+ Sbjct: 398 VSLTRMKIEDINV--PG-REPLR--FEMVQARKPDTFRCCHRL--AGGQLRDVEVASSPI 450 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILC 531 + +L I D+TE+K+ E + Sbjct: 451 EIAGRKLLY--SIVRDVTERKRFEERMRQ 477 >gi|95930766|ref|ZP_01313499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95133246|gb|EAT14912.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 678 Score = 578 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 149/575 (25%), Positives = 280/575 (48%), Gaps = 9/575 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + A + + + ER S + + LG + Sbjct: 108 FRDITARKKTEKALQTSEERFRTIYESSVAGIAMLAPDGHFLQANSAFCNFLGYNEEELL 167 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 H +D ++ + + R + E R D W + ++N Sbjct: 168 QMKIT--DVTHPDDIEDTLSRRNIARANRLHSIVCEKRYIRKDGSVFWAQLSSTWFFDAN 225 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G+ L + + DIT +K++ E I A+ D+LTG+ NR F DRL ++ S + R Sbjct: 226 GNPLYTVPVIQDITRRKEAEERIRELAYYDSLTGLANRTLFNDRLDQVMARSRRRQS-RF 284 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 +M +D+D++K +ND LG AVGD +L R+ E L+ D +ARL G+ F IIL Sbjct: 285 ALMFLDLDRFKGVNDTLGHAVGDAMLRQAAERLNECLRENDTVARLGGDEFVIILSDYKE 344 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + A + K+++ P +L RE+ + S+G A + ++++L++A++AMY AK Sbjct: 345 DANLPRVADKILKALSSPFDLGVREVYSSTSVGIAIYPDDGDEATDLLRHADMAMYAAKE 404 Query: 687 RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 GG+ + +++ R+ ++ +L A+E E ++ Y P I L+ ++ G+EAL++W Sbjct: 405 SGGDTFRFYSSEMNARAVSRMDMEANLRRALEQEEFFIEYQPQIDLITNKVAGVEALLRW 464 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G I ++F+ +AEE +I + +++ R+ + W Q P + IN++ + Sbjct: 465 QHPQLGVIPPTQFIGLAEETNLILPLGEWVMRRVFEQCVMW-KQEGYLPFRVGINVSGRQ 523 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + + + + L+ +T +P ++ +ESVVM + + + L L L+K+GI++ +DDFG Sbjct: 524 FVQPDFVDMVCRLLDETGAAPELLEFEITESVVMKDVDAAVLTLEALKKLGINMAIDDFG 583 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LS L ++P + +K + S ++ AI+ + I MAK +E + A+ + E Sbjct: 584 TGYSSLSCLKHLPLNRLKIDKSFISDLQDNADDRAIVEATIAMAKRLELGVTAEGVETEG 643 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKER 956 + + CD +Q + + PL + + L +R Sbjct: 644 QYGFVQKRECDEVQGFYFSRPLSPSEVADAWLIKR 678 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 4/122 (3%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + + + S D++ + LG + N+ +H + + + Sbjct: 2 QYADLLENSNDLIQVVGFDGRIIYANRMWQETLGYGKNDL--TQLNFFDLLHADFHCDCQ 59 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + ++E + I + NG+ G DIT +KK+ Sbjct: 60 DRIQRLMSGETVP-RFEVEYKTRYGHKIIAEGSIS-LYKENGEPCGIQGFFRDITARKKT 117 Query: 526 LE 527 + Sbjct: 118 EK 119 >gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 1514 Score = 578 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 157/583 (26%), Positives = 269/583 (46%), Gaps = 7/583 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L V + Q + + + A+ + W++D+ ++V + + Sbjct: 928 LRVAERTAKLSQTIAELHQVEEILRGKETHYRQALNLTNTGSWEFDLASEKVFWSEQVEI 987 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I G+ G+ G IH D D ++ + + + + EFRV D HW+ Sbjct: 988 IWGMKPGTFRGEFDQVKAGIHPQDFDLWQQNVQACIEEGKEH-NLEFRVVHPDGSIHWVQ 1046 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 +S G +R G+ D+TE+K S E + A D+LT +PNR RL + Sbjct: 1047 AIGNAEYDSQGHPIRLRGLVMDVTERKTSQERLNYMAHHDHLTDLPNRLLLKARLDQSIQ 1106 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + + V+ ID+D++K IND +G A GD +L L +R+ ++L+ D +AR+SG+ Sbjct: 1107 QATR-KRTKLAVVFIDLDRFKHINDSMGHAAGDALLQQLAQRLRQVLRSSDTVARISGDE 1165 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +L + + + P L + I +T+S+G + + + ++ +L+N Sbjct: 1166 FVAVLEDIEDIQHASMVVAKLMTVFEEPFPLEGQIIHMTSSMGLSLFPDDGMDTAILLRN 1225 Query: 677 AELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK G N + + V+ + L A++ +E YLVY P I L Sbjct: 1226 ADSAMYRAKEEGRNTYCFYAEEMTSAAFEYVLFENALRGALKRNEFYLVYQPQIDLSSHR 1285 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 VG+E L++W HP+ G +S ++F+ IAE+ +I+ I ++L R +W DQ Sbjct: 1286 WVGMEVLLRWHHPELGIVSPAQFIPIAEQSGLIQEIGTWVLYRACCQAKTWLDQGIDFG- 1344 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N+A+ + N +Q + + ++L +E +VM E L L+ + Sbjct: 1345 HIAVNVAAPQIQQNNFVHLVQDALDSSGLPSPHLELELTEGLVMHQTEDRIKQLEVLQDM 1404 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 GI L +DDFGT S LSYL +P + +K + S + +AI ++I + K + Sbjct: 1405 GIYLAIDDFGTGYSSLSYLKRLPINKLKIDKSFVRDIPHDTNDMAISEAVIALGKALNLR 1464 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 IIA+ + EI L GC Q + PL I +L E Sbjct: 1465 IIAEGVEQEIQATFLREKGCHEAQGYLYSKPLPPEEITQLFAE 1507 >gi|78485566|ref|YP_391491.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] gi|78363852|gb|ABB41817.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] Length = 815 Score = 578 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 154/580 (26%), Positives = 286/580 (49%), Gaps = 14/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++ T+++ Q + +R + + + + +WDWDI D+VT A ++GL Sbjct: 233 IMLDTLVKRENEIVESHQALEQSEKRLNQIMAVNHEGIWDWDIKADKVTHNQSWADMIGL 292 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRI 499 + P + + +H +DR+ + + E+R V+ + W+ R Sbjct: 293 DDNLLVHPAQVFFDAVHPDDRERVSRAVGECFKSKS-HYHMEYRFVQRNTGKEVWVQDRG 351 Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + ++ + LR +G ++TE+KK+ E I AF D LT +PNR+ DRL + ++ Sbjct: 352 DVVEWDAEENPLRMVGGFYEVTERKKAEEAIQNLAFYDPLTQLPNRRLLQDRLQQEMAVT 411 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ +M ID+D +K +ND LG GD +L + R+ E ++ D +AR+ G+ F Sbjct: 412 ERSKHV-CALMFIDLDDFKTLNDTLGHDTGDKLLRQVATRLRENVREFDTVARIGGDEFV 470 Query: 619 IILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 +IL S ++ + A + + + P L T SIG ++ + T E+ Sbjct: 471 LILPSLDDDWKDAATHAELVAQKVLRVLNKPYLLDSTPYHSTPSIGVKLFSGHQETLEEL 530 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731 LK+A+LAMY AK +G N V + + ++ + A+ + L Y P I Sbjct: 531 LKHADLAMYQAKAKGRNTVRFYDTTMQEVVNAKSVMEASMRQAITGQQFVLFYQPQIN-S 589 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + +I+G EAL++W HP+ G I+ ++F+ +AEE I +I ++L+ ++ W Q Sbjct: 590 NGQIIGAEALVRWRHPQKGLIAPNKFIPLAEENGFILSIGRWVLQTACEQLVEWARQPAT 649 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 I + +N++++ +L E ++ +I +T +P +KL +ES+++ + E + L Sbjct: 650 AQITMAVNVSARQFHQIDLVEEVERIICQTGANPQLLKLELTESLLVKDIEDVVDKMQAL 709 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 +K+G+S +LDDFGT S L+YL +P D +K + + + AI R++I +AK++ Sbjct: 710 KKLGVSFSLDDFGTGYSSLAYLKRLPLDQLKIDQTFVRDIIDDSNDAAIARAVIALAKSM 769 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 E +IA+ + + L MGC Q P+ Sbjct: 770 EFNVIAEGVENIEQHQMLIDMGCRVFQGYLFGRPVPIEEF 809 >gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 1514 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 157/583 (26%), Positives = 269/583 (46%), Gaps = 7/583 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L V + Q + + + A+ + W++D+ ++V + + Sbjct: 928 LRVAERTAKLSQTIAELHQVEEILRGKETHYRQALNLTNTGSWEFDLASEKVFWSEQVEI 987 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I G+ G+ G IH D D ++ + + + + EFRV D HW+ Sbjct: 988 IWGMKPGTFRGEFDQVKAGIHPQDFDLWQQNVQACIEEGKEH-NLEFRVVHPDGSIHWVQ 1046 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 +S G +R G+ D+TE+K S E + A D+LT +PNR RL + Sbjct: 1047 AIGNAEYDSQGHPIRLRGLIMDVTERKTSQERLNYMAHHDHLTDLPNRLLLKARLDQSIQ 1106 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + + V+ ID+D++K IND +G A GD +L L +R+ ++L+ D +AR+SG+ Sbjct: 1107 QATR-KRTKLAVVFIDLDRFKHINDSMGHAAGDALLQQLAQRLRQVLRSSDTVARISGDE 1165 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +L + + + P L + I +T+S+G + + + ++ +L+N Sbjct: 1166 FVAVLEDIEDIQHASMVVAKLMTVFEEPFPLEGQIIHMTSSMGLSLFPDDGMDTAILLRN 1225 Query: 677 AELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK G N + + V+ + L A++ +E YLVY P I L Sbjct: 1226 ADSAMYRAKEEGRNTYCFYAEEMTSAAFEYVLFENALRGALKRNEFYLVYQPQIDLSSHR 1285 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 VG+E L++W HP+ G +S ++F+ IAE+ +I+ I ++L R +W DQ Sbjct: 1286 WVGMEVLLRWHHPELGIVSPAQFIPIAEQSGLIQEIGTWVLYRACCQAKTWLDQGIDFG- 1344 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N+A+ + N +Q + + ++L +E +VM E L L+ + Sbjct: 1345 HIAVNVAAPQIQQNNFVHLVQDALDSSGLPSPHLELELTEGLVMHQTEDRIKQLEVLQDM 1404 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 GI L +DDFGT S LSYL +P + +K + S + +AI ++I + K + Sbjct: 1405 GIYLAIDDFGTGYSSLSYLKRLPINKLKIDKSFVRDIPHDTNDMAISEAVIALGKALNLR 1464 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 IIA+ + EI L GC Q + PL I +L E Sbjct: 1465 IIAEGVEQEIQATFLREKGCHEAQGYLYSKPLPPEEITQLFAE 1507 >gi|297538783|ref|YP_003674552.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297258130|gb|ADI29975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 710 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 151/578 (26%), Positives = 272/578 (47%), Gaps = 13/578 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445 IQ++ Q + R + + ++ + P +A I G + + Sbjct: 136 IQNITQRKAAEQSLHDAEFRYRSIFENAIEGIFQTSPNGHYLIVNPALAKIYGYSSPEEL 195 Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + N ++ R+ F + + + +E V DN W+ R + Sbjct: 196 ISVLNNIQQQLYVTPGRREEFVQAMLA----NQSVHNFESLVYKKDNSTIWISENARMVH 251 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G++L Y G DIT +K I A D+LTG+PNR DRL ++ + N Sbjct: 252 DKAGNLLYYEGTVEDITARKNYDHKIEHQAKHDSLTGLPNRYMLNDRLQQSINFADRYKN 311 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + V +D+D++K IND +G VGD +L+ +++R+ ++ D + RL G+ F I+L + Sbjct: 312 -KMAVAFVDLDQFKLINDSMGHEVGDQLLLIMSKRLSSCIREVDTVVRLGGDEFVILLTN 370 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 N + + ++A P + E + VT+SIG + + I + +LKNA+ AMY Sbjct: 371 IENVNDVLISMQRVLTAVAAPCVINELDYVVTSSIGISIYPDDGIEPNTLLKNADTAMYK 430 Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + + ++RV ++ L LA+EN EL L Y P + I G EAL Sbjct: 431 AKKAGRNNYQIYTQELNEALTERVTMEYRLRLAIENGELLLHYQPKVDFATGLISGAEAL 490 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W P+ I +F+ IAEE +I++I ++L + +++ PI I +N++ Sbjct: 491 IRWQTPEGELIPPVKFIHIAEETGLIESIGEWVLIEACKKAKELKEKMGR-PIPIAVNVS 549 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L + ++ + T P ++L +ES ++ + + L L+ IGI L +D Sbjct: 550 PRQFKQPNLAQTIKNTLELTNLDPDCLELEITESTLIDDAAKFIQTLHALKTIGIKLAID 609 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P D +K + + ++ AIL++II + +++ +IA+ + Sbjct: 610 DFGTGYSSLAYLKDFPIDRLKIDKAFVSNLENDPANTAILKAIIVLGQSLGMKVIAEGVE 669 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L +GCD +Q + + P+ LL+ + Sbjct: 670 TRFQHDYLQSIGCDELQGYYFSKPIPAIEFEALLQNQL 707 Score = 84.6 bits (208), Expect = 7e-14, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 10/143 (6%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMH-GPIRNWLP 454 D +R ++ + + + ++ + + + G + + ++ Sbjct: 16 AFVHDRQRMLDTLVDNLEGLVYCNLYDQHWTMIYVSDGCKDLTGYFPDDLIFNNLVSYEE 75 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 I +DR R +D V + R + E+R+R A+ W+ R P+ N+ G + G Sbjct: 76 IIFKDDRALVRYAIDEAVKQGK-RFEVEYRIRHANTDIIWVCERGNPIYNAKGKVHAIEG 134 Query: 515 IANDITEQKKSLEGILCNAFQDN 537 +IT++K + + D Sbjct: 135 FIQNITQRKAAE-----QSLHDA 152 >gi|302342228|ref|YP_003806757.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfarculus baarsii DSM 2075] gi|301638841|gb|ADK84163.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfarculus baarsii DSM 2075] Length = 966 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 146/570 (25%), Positives = 270/570 (47%), Gaps = 14/570 (2%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 GI + E+ L + + + D I G + G Sbjct: 403 GIRASEEQMRLLARVFENTVEGIIVTDADGVIEMVNAAFCAITGFDAAEAVGARPSILSS 462 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D + ++ + S G Q E R + + + + I + + + +G Sbjct: 463 GRH--DAEFYQRMWRSLADQ--GHWQGEVWNRRKNGEAYPEWLTITAIKDKSDRTTHLVG 518 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + +DITE K++ E I A+ D LTG+PNRQ F DRL + + + ++ +D+D Sbjct: 519 VFHDITEAKRNEERITHQAYHDALTGLPNRQLFNDRLAMAIAQAHRGGHG-LALLFLDLD 577 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K IND LG AVGD +L ++ +R+ L+ D +ARL G+ F +++ ++ I A Sbjct: 578 NFKNINDSLGHAVGDMLLQAVAQRLTRWLREEDTVARLGGDEFVMLIQGASDPDYIMQVA 637 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + S++ P + E+ VTASIG + ++ NA+LAM+ AK G N+++ Sbjct: 638 RRILDSMSQPFAVGPHELYVTASIGVTIHPHDGHDAQTLVANADLAMFRAKDEGRNNIKL 697 Query: 695 FRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ + L A+E E + Y P + L +++VG+EAL++W P + Sbjct: 698 FTPAMNAKVMRRMELEANLRKALEREEFEVFYQPKVELRSDKVVGVEALVRWRRPDSVVV 757 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S EF+ I EE +I + ++LE+ W D + + +N++ + DN L + Sbjct: 758 SPDEFIPICEETGLILPLGKWVLEQACSRAKYWHDMGFD-GLNVSVNLSPRQFQDNHLVD 816 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++++T +P ++L +E VVM + + + + RL +G+ L+LDDFG S L Y Sbjct: 817 HVGEILAQTGLAPHCLELEITEGVVMHSVDEAIETMNRLSSMGVRLSLDDFGRGYSSLYY 876 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P ++K + S + +I+ +II M++++ ++A+ + + + L Sbjct: 877 LKRFPMSSLKIDRSFVADIATDPDDASIVNTIISMSRSLNLQVVAEGVETKEQLDFLRSK 936 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLV 960 CD +Q + + PL + +LL+ P V Sbjct: 937 RCDQMQGYYFSRPLPARELTELLEGLRPAV 966 Score = 96.2 bits (238), Expect = 3e-17, Method: Composition-based stats. Identities = 53/481 (11%), Positives = 138/481 (28%), Gaps = 53/481 (11%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 +L ++ V ++ + +R + DI++ ILG Sbjct: 137 LLWIDGILTDVSQRRQAAEALRQSEQRFRGLSENAPDIIYTLSPDGRFTYVNRAWRRILG 196 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 A+ + G ++ + + D++R + + ++ + + + + + Sbjct: 197 HAAEEVLGRY--FIEFAPPDSVDDYRRLFKAVRDGKKTLYGA-HPMLHKNGEVRHLAMSG 253 Query: 500 RPMSNSNGDILRYIGIANDIT----EQKKSLEGILCNAFQDNLTGIPN--------RQSF 547 P + G + +G+ D++ ++ A L G+ N R S Sbjct: 254 APNIDDMGRVTGMVGMLKDMSSQIQAERALRHSEASLARAQKLAGLGNWELKLSNSRLSC 313 Query: 548 LDRLTTILDLSATDDNLRPT--VMVIDIDKYKKINDVL-----------------GIAVG 588 D + I DL D V + D + Sbjct: 314 SDEVFNIYDLPRRDPASLFGEIVSCMHDDDIDYVTRCFEKAFLQDEAVSFEHRIKRHDGQ 373 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 + VL + + + + ++ + + I + ++ A ++ I Sbjct: 374 ERVLRQVASVLRD--DRGEPISMIGAVQ--DITGIRASEEQMRLLARVFENTVEGIIVTD 429 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MI 707 + + F + T ++E A A G + E ++ Sbjct: 430 ADGVIEMVNAAFCAIT--GFDAAE----AVGARPSILSSGRHDAEFYQRMWRSLADQGHW 483 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + ++ +N E Y + I + D+ + + + A + Sbjct: 484 QGEVWNRRKNGEAYPEWLTITAIKDKSDRTTHLVGVFHDITEAKRNEERITHQAYHDALT 543 Query: 768 KAINLFML--ERIARDIISWRDQANMPPIFI------LINIASKDLLDNELCEGMQALIS 819 N + + R + +F+ IN + + + L + + ++ Sbjct: 544 GLPNRQLFNDRLAMAIAQAHRGGHGLALLFLDLDNFKNINDSLGHAVGDMLLQAVAQRLT 603 Query: 820 K 820 + Sbjct: 604 R 604 Score = 68.4 bits (166), Expect = 6e-09, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 51/154 (33%), Gaps = 16/154 (10%) Query: 389 HVLATGYFSQGIFSDGERQSLAV--------LGSGDIVWDWDI--VRDRVTTTPDIATIL 438 H + I ++ + A G V+ + + P +A +L Sbjct: 11 HCRDLASAQRRIAMLEDKLAQAAGDAYRGLFENLGVGVFRLTMAGQGRFLQANPALAALL 70 Query: 439 GL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G ++ + + ++ + R+ V +E + D + W Sbjct: 71 GYDSAEELMSTP---VSQVYPDQRER--AFFARQVLQNGFVADFELPLCRKDGRTIWAEA 125 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 ++ G +L GI D+++++++ E + Sbjct: 126 SAAAQRDAEGRLLWIDGILTDVSQRRQAAEALRQ 159 >gi|158334888|ref|YP_001516060.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] gi|158305129|gb|ABW26746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 705 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 175/621 (28%), Positives = 303/621 (48%), Gaps = 20/621 (3%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLV------LIVILIGFTVIQHVLATGYFSQG 399 ++ + + +T + D +I A+ G +I + I++ + Sbjct: 77 VVALGHRIPIILLTGQEDREIDLAAMTAGATDYLVKGMITSALLERSIRYAINHTRTLVA 136 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E+ +L S D +WDW++ +V +P A I+G A ++ I+ W IH Sbjct: 137 LQEREEQYNLVAQASNDGLWDWNLQTHQVYYSPRWAAIIGQAEVTLQPSIQEWFDRIHPE 196 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D++ FR L + + ++R+ D + W+ R + ++R G D+ Sbjct: 197 DKERFRIDLRRHLRRETTAFECQYRMLHRDQSYRWVSSRGMAVFGPKNRVVRMAGSHTDL 256 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T A D+LTG+P+R FLD+L L N V+ +D D++K I Sbjct: 257 TNHV---------ALYDHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLDCDRFKVI 307 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ + +R+ L+ D++ARL G+ F I+L + + A + + Sbjct: 308 NDSLGHAIGDQLLIEVAQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQVASRLNR 367 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697 + L + ++ASIG A + + +L++A+ AMY AK G + F + Sbjct: 368 ELEKAFELQGHTVYISASIGIALNSDHSPQAENLLRDADNAMYRAKALGKSRYVVFEAAM 427 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + ++ DL A+ N E L Y PII L EIV LEALI+W HP+ G IS EF Sbjct: 428 RDRVQALLRVETDLRAAIANQEFQLYYQPIISLKTHEIVSLEALIRWQHPQRGLISPQEF 487 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQA 816 + +AEE +I AI ++LE + + W PP+ I +N++ K L + +Q+ Sbjct: 488 IPVAEETGLILAIGQWVLEESCQQLWQWHQTLTEIPPLSISVNLSRKQFSQASLGKQIQS 547 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++S+T S +KL +E+++M N L+ +LR +G+ L +DDFGT S LS+L Sbjct: 548 ILSETGVSARHLKLEITETMIMENEVMVSELISQLRALGLQLQIDDFGTGYSSLSFLHNF 607 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P DT+K + S + G ++ I+R++I +A N+ T IA+ + + ++ L + CD Sbjct: 608 PLDTLKIDRSFIEGLVTDTEKSEIVRTMITLAHNLGMTAIAEGVETQAQLQWLQQHHCDC 667 Query: 935 IQDSHVASPLGFNSILKLLKE 955 +Q ++ PL + K L + Sbjct: 668 VQGYLLSKPLSAAQMQKALMQ 688 >gi|226941473|ref|YP_002796547.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Laribacter hongkongensis HLHK9] gi|226716400|gb|ACO75538.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Laribacter hongkongensis HLHK9] Length = 839 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 160/611 (26%), Positives = 271/611 (44%), Gaps = 16/611 (2%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSG 415 + LVG ++ + V + A + + + LA + Sbjct: 233 LGITSENNQLTGLVGFADIMASIEHEYVHELQYALKERDEALNLSQQNLRLADKVFEATL 292 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI--HINDRDNFRTILDSFVG 473 + + D T P I G + G L + L Sbjct: 293 EGIIITDAEGIIETVNPAFTRITGWRREEVVGKNPRILSSSQQPPEFYRHLWQSLREH-- 350 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 G Q E R D +F+ + I + +G Y GI +DIT++K + E + A Sbjct: 351 ---GFWQGEVINRRKDGKFYTEHLTITGIRGPDGTFTHYAGIFSDITQRKLNEERLHYLA 407 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LT +PNR ++RL L + R +M +D+D++K IND LG AVGD +L Sbjct: 408 NHDPLTDLPNRTLLMERLGAALTRAHRQGK-RVALMFLDLDRFKFINDTLGHAVGDKLLQ 466 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 ++ R+ L+ D +ARL G+ F I+L + +A A + + + L ++ Sbjct: 467 TVASRLTGSLRASDTVARLGGDEFNIVLEDIRDLRGVAQTAQKLIDRVQGMVTLDGHDVY 526 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDL 711 VTAS+G A + T + NA+ AMY AK RG N+ + F S R+ ++ +L Sbjct: 527 VTASVGIAIYPDDGSTPEVLRMNADTAMYRAKERGKNNFQFFTADMNASTLARLRLESNL 586 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+ E L + P + L I G+EAL++W + G +S ++F+ IAEE +I I Sbjct: 587 HRALARQEFQLHFQPKVDLAHGHIYGMEALLRWRSHELGPVSPADFIPIAEESNLISTIG 646 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 ++LE+ R W + + P + +N++SK + ++ ++ ++ + ++L Sbjct: 647 EWVLEQACRQARHWLN-LGLLPGTVAVNLSSKQMTQGDIVATVRRILEHSNLPGHYLELE 705 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +ESV M N L L+ +G+ + +DDFGT S LSYL +P D +K + S +T Sbjct: 706 ITESVAMDNTGEMIRTLKNLKALGVRIAIDDFGTGYSSLSYLKQLPIDVLKIDRSFVTDL 765 Query: 892 TE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 E AI +II M +++ +A+ + E + L GC Y Q + P+ ++ Sbjct: 766 HEDRDDAAIASAIISMGQSLNLQPVAEGVEREEHRQFLLDHGCQYGQGYLFSRPVPAATM 825 Query: 950 LKLLKERFPLV 960 +LL E L Sbjct: 826 EQLLLESQALS 836 >gi|220908927|ref|YP_002484238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] gi|219865538|gb|ACL45877.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7425] Length = 905 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 167/679 (24%), Positives = 319/679 (46%), Gaps = 27/679 (3%) Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341 V ++F + + ++ ++ A + + I+L+ + ++ +A+++ Sbjct: 245 VAQLSFKSASPLLGQLDAAYDDQLLQAVVVGGLMCLILLFALVVWVVLPLRSLSQALVVE 304 Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 A I + L I++ L+L + + Sbjct: 305 DAS---LIHKLSTAKTEFGELAQLILKFFHQKELLL----------SEIAVRKSVETELR 351 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 ER LA G+ D +WDWD+ ++++ + ++LG A + + WL IH DR Sbjct: 352 QSEERYVLAAAGANDGLWDWDLQQNQIYFSNRWKSMLGFAELEIPNQVEAWLERIHPEDR 411 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + L + + +YE+R+R D + WM+ R + + G R G D+T+ Sbjct: 412 EQMQHCLQEHLEGKSEHFEYEYRMRLKDGSYRWMLCRGLAVRDQVGQAYRIAGSQTDLTD 471 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K A D LT + NR ++RL + + V+ +D+D++K +ND Sbjct: 472 RK---------ALYDPLTHLANRSLLMERLRQAMQIRERYPARLFAVLFLDLDRFKWVND 522 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG +GD +L+ + R+ L + D +ARL G+ F ++L + + + A ++ ++ Sbjct: 523 SLGHWIGDRLLIEIAARLKALSRSEDTVARLGGDEFVLLLANLSTPAEAIAVASRIQHTL 582 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF- 700 A + I SIG A + E+L+ A++AMY +K RGGN+V+ F + Sbjct: 583 AQVFEIEGHTIYTGTSIGIAFADHLEQKGEELLQYADMAMYQSKSRGGNNVQVFDTAMRV 642 Query: 701 -RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 S+R+ ++ +L A+E +L L Y PI+ L + G EAL++W HP+ G +S +F+ Sbjct: 643 GTSNRLKLELELRQALEQQQLLLYYQPIVCLSTGTLQGFEALVRWQHPQAGLLSPVDFLP 702 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I I ++L+ + SW+ Q P+ I +N +++ + +Q ++ Sbjct: 703 LAEETGLILPIGTWILQTACSQMYSWQQQIQADVPLSISVNFSTRQFFHPNFLQQIQTIL 762 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 S+T +P +KL +E ++ + ER+ LL +L +GI + LDDFGT S LS+L P Sbjct: 763 SETGLAPHCLKLELTEHTMIEDAERAARLLSQLNALGIDIQLDDFGTGFSSLSHLHEFPI 822 Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 T+K + + + I+++++ +A N+ +++A+ I + ++L +GCDY Q Sbjct: 823 HTLKIDRCFTQQALDSSRHKEIVQAVVTLAHNLGLSVVAEGIETKAQYEQLRNLGCDYGQ 882 Query: 937 DSHVASPLGFNSILKLLKE 955 PL + Sbjct: 883 GYFFTPPLDLFQATAWMTA 901 >gi|89899894|ref|YP_522365.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89344631|gb|ABD68834.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 731 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 163/580 (28%), Positives = 252/580 (43%), Gaps = 9/580 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + ER LA+ +GD VWDW I + + ILG G Sbjct: 145 VRTFTDVTDYVQAQATLQKNEERWKLALESTGDGVWDWHIQSGVEFYSKRLLEILGYDVG 204 Query: 444 SMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 +H R IH +D + E RVR D + WM+ R + Sbjct: 205 DVHLQARGEFDKLIHPDDMAQLLRARQAHFDGLTSTYADEHRVRCKDGSWKWMLSRGMVI 264 Query: 503 -SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 ++ G LR IG D+TE+KKS I A D LTG+PNR DR+ + S D Sbjct: 265 SRDAQGLPLRMIGTHTDVTERKKSEALIWRQAHFDTLTGLPNRHMLRDRVAQEIKKSKRD 324 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 L+ V+ ID+D +K++ND LG GD +LV RRI + ++ D +AR+ G+ F +IL Sbjct: 325 -GLQLAVLFIDLDHFKEVNDTLGHNSGDRLLVEAARRISDCVRESDTVARMGGDEFAVIL 383 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 ++ + + +++ L + V+ASIG + ++ KNA+ A+ Sbjct: 384 TELLDASSLERILQKILRALECVFQLDGEQAFVSASIGVTMYPLDAGDIEDLFKNADQAL 443 Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F +RV + DL + + LVY PI+ L + E Sbjct: 444 YVAKGAGRNRFSFFTPALQQAAQNRVRLANDLHAGLIGQQFRLVYQPIVELASGAVCKAE 503 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HP G IS EF+ IAE +I AI ++ ++ AR + +WR P I +N Sbjct: 504 ALIRWQHPTRGLISPVEFIPIAEASGLIVAIGEWVFQQAARQVQAWRTAL-DPDFQISVN 562 Query: 800 IASKDLLDNELCEG-MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 + + + + I + +E +++ L L GI + Sbjct: 563 KSPVQFYQRGKTKTPWAQQLQAMGLPGNSIVVEITEGLLLDTSSSVADQLLDLHDAGIQV 622 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 +LDDFGT S LSYL D VK + S + + +A+ ++II MA + +IA+ Sbjct: 623 SLDDFGTGYSSLSYLQRFDIDFVKIDQSFVRYLIPESTDLALCQAIIAMAHALGMKVIAE 682 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L GCDY Q + P+ + + Sbjct: 683 GVETAQQRDLLAAAGCDYGQGYLFSKPVSAPDFEAFMAAQ 722 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] gi|151280917|gb|ABR89327.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 153/574 (26%), Positives = 272/574 (47%), Gaps = 9/574 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445 IQ V + + R + + ++ + P +A + G + ++ Sbjct: 130 IQDVTERKQADEALREAERRYRSIFENAIEGIYQSTPSDGYLAVNPALARMYGYDSPQAL 189 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 +R+ ++++ R + +E RV + + W+ R + NS Sbjct: 190 ISTLRDIDNQVYVD--PQRRLEFKRLMAKHGVVTNFESRVHRRNGEVIWISENARSVYNS 247 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 +G +L + G ITE+K I A D LTG+PNR DR+ + S L Sbjct: 248 DGTLLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLT 307 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 + +D+D++K IND LG VGD++L +R+ L+ D +AR G+ F ++L + Sbjct: 308 -AIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTDQP 366 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 N I + ++ P + E +T SIG + +LKNA+ AMY AK Sbjct: 367 NEEAITHTMQRVLHEVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAK 426 Query: 686 HRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N+ + F S ++ L A+ N + L Y P + L +I+G EAL++ Sbjct: 427 ELGRNNFQYFSAEMNSSVTDRLELLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVR 486 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+ G +S + F+ +AEE +I + ++L R +W+D PPI I +N++ + Sbjct: 487 WNSAHSGMVSPASFIPLAEETGLIIPLGEWVLRTACRQNRAWQDA-GYPPIPISVNLSPR 545 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L ++ E ++ ++++T ++L +ESV+ + E+S LL +LR +G+ ++LDDF Sbjct: 546 QLARGDIVEVVERILTETGLEAQHLELEITESVMTTDVEKSFALLTQLRSLGVKISLDDF 605 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL P DT+K + S + + AI+++II + +N+ T++A+ I E Sbjct: 606 GTGYSSLSYLKRFPVDTLKIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETE 665 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD Q ++ P+ + + LL + Sbjct: 666 DQFQFLLANGCDEGQGYLMSKPVPNKNFVDLLTQ 699 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + + G + R I H +DR + R + V R R E+R+ Sbjct: 43 FVSEGCFALTGYTEEDLLFNSRVSYDQITHPDDRRHVRDTILEAVRNNR-RFDIEYRIVR 101 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 AD + R +S+ N G D+TE+K++ E Sbjct: 102 ADGSIRHVWERGTNISHDNKAWDILEGFIQDVTERKQADE 141 >gi|254518217|ref|ZP_05130273.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp. 7_2_43FAA] gi|226911966|gb|EEH97167.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp. 7_2_43FAA] Length = 960 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 153/560 (27%), Positives = 277/560 (49%), Gaps = 6/560 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + ER LAV G+ DI+W++D + +LG + I + I Sbjct: 403 EVQASEERYKLAVDGANDIIWEYDFRNKEHYLSNKFEGLLGYTIYNSENLIDTFKKIILK 462 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D ++ + + + E RV N W+ IR + + +S + ++ G +D Sbjct: 463 EDLGKVLSLFEEHLNRKSSYFYVECRVVDRFNNIKWVFIRGKALIDSENNPVKISGSISD 522 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE+KK+ E I AF D LTG+PN+ FLD++ L ++ + +IDID +K Sbjct: 523 ITERKKAEEKIETLAFYDQLTGLPNKHMFLDKIDDELLRGLKNEYIGVA-FLIDIDNFKN 581 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD+ L + + +LL + + +L G+ F I+++ N + + A + Sbjct: 582 INDTLGHDYGDEFLKCIAKEFIKLLDNDEFICKLDGDEFLILMLDVNGKAEAEEMANKIL 641 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + E+ I + SIG + + SE+LKN+++AMY AK G N +R S Sbjct: 642 ELFKNPFKVKEKNIFTSVSIGISIIPNDARNKSELLKNSDIAMYKAKENGKNRYLFYRES 701 Query: 699 SFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + + L A+ SE L+Y P I + D +++G EAL++W +GN+S E Sbjct: 702 MAKDIVRKSQLIDGLRNAICKSEFELLYQPQINMNDSKVIGAEALLRWRSNSFGNVSPIE 761 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I +I ++L+ W D+ + P+ I +N++ L + ++ Sbjct: 762 FIPLAEQSELIISIGKWVLKNACIKNKEWIDK-GITPMTIAVNVSVIQLYQSNFLNTVRD 820 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ ++ +++ +ES+VM N E + +L ++ +G+ + LDDFGT S LSYL + Sbjct: 821 ILDESGLPAEYLEIEITESIVMNNIEENLKVLNDIKDLGVKIALDDFGTGYSSLSYLRLL 880 Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + E I+ II +A + ++A+ + + L +MGCD Sbjct: 881 PIDKLKLDKSFIDNIHISENDRVIVECIIKLAHEMNILVVAEGVEIKEQFDILYKMGCDR 940 Query: 935 IQDSHVASPLGFNSILKLLK 954 IQ + + P+ + ++K Sbjct: 941 IQGYYFSKPISPDKFELIMK 960 >gi|254414962|ref|ZP_05028725.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196178109|gb|EDX73110.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1393 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 159/566 (28%), Positives = 277/566 (48%), Gaps = 7/566 (1%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + E+ L + + + + + LG + + + Sbjct: 824 RKQAEAALLKSEEQFRLTFELAPIGMAMTSLEGQFLKVNQALCDALGYTAQELL--ALTF 881 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 H +R T S + LQ E R+ + + I+++ + ++ G L Y Sbjct: 882 TEISHPTERALHFTQHQSLLQGELSHLQTERRLISKSGRIVNAILKVVLVRDAQGQPLHY 941 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 I DI+++K+ E +L +AF D LTG+PNR F+DRL L + + V+V+D Sbjct: 942 ISQVVDISDRKRMEEQLLHDAFHDVLTGLPNRALFMDRLEYALRRAGQRWDYLCAVIVLD 1001 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K IND LG VGD +L ++ R+ L+ D LARL G+ F I+L N+ D Sbjct: 1002 LDRFKVINDSLGHLVGDRLLSAIAERLQGCLRPSDTLARLGGDEFTILLDDIPNTAAATD 1061 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A ++ +++ NL E+ TASIG A + ++L++A+ AM+ AK +G Sbjct: 1062 IAKSIHQTLESSFNLDGYEVFATASIGIALSGMGYHRAEDLLRDADTAMHRAKLQGTACY 1121 Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F +S ++ ++ +L A+E EL + Y PII L +I G EAL++W HP+ G Sbjct: 1122 VMFDTAMSGRALAQLRLETELRWAIERQELEVYYQPIISLGTGKITGFEALVRWQHPEQG 1181 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNE 809 IS F+ +AEE +I I ++L + W+ Q PP+ + +N++ K Sbjct: 1182 MISPGAFIPLAEETGLIIPIGQWVLRTSCYQLRQWQQQFPHYPPLTMSVNLSGKQFSQTN 1241 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +I +T +PS +KL +ES +M + + + LL RL+ + I L +DDFGT S Sbjct: 1242 LIEQIAQIIQETEVNPSTLKLEITESGIMEHSDSASALLERLKALNIQLYIDDFGTGYSS 1301 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LS L P D +K + S ++ + + I+++I+ +A N+ ++A+ I + + +L Sbjct: 1302 LSRLHQFPIDALKIDRSFVSRMGDAGENGEIVQAIVTLAHNLGMDVVAEGIETNMQLAQL 1361 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 C+Y Q + PL + +L+ Sbjct: 1362 RGRRCEYGQGYFFSKPLNRQAAEQLM 1387 Score = 107 bits (268), Expect = 9e-21, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 3/149 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATIL 438 + + + + + E+ + D+VW + + + P + Sbjct: 683 LTHFVGIQTDITKRKQAEEALRQSEEKLDSILRSLDDVVWSASLENQQFIYLNPATERVY 742 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G W IH +DR + + G E+RV D + W+ R Sbjct: 743 GRPVSDFVDCPSLWQFVIHPDDRQRVERASNRMMHQ--GSKDLEYRVVRPDGEVRWLRDR 800 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527 R + + G +R GIA D+T++K++ Sbjct: 801 ARLIYDHRGIAIRMDGIATDMTKRKQAEA 829 Score = 84.2 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 6/154 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATI 437 + + +VLA Q ++ A+ S + V D + P ++ Sbjct: 555 IHFLQAVANVLALAIGHQQSEANLYLMQRAIAASNNGVIITDPNQPDNPVIYVNPAFESM 614 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + + G + + T L + + +R + D W + Sbjct: 615 TGYTAKEVIGHNCRFWQ--EPDYNQAGVTKLATAIQEQREC-HVILQNYRKDGSTFWNEL 671 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + P+ + +G + ++GI DIT++K++ E + Sbjct: 672 YVSPVFDGDGYLTHFVGIQTDITKRKQAEEALRQ 705 Score = 39.2 bits (90), Expect = 3.4, Method: Composition-based stats. Identities = 25/237 (10%), Positives = 67/237 (28%), Gaps = 11/237 (4%) Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 + + L C+ + +V + TL ++ + + G+ + + W+ Sbjct: 23 WFYMLAGYGLICLDGFMDLVNRTFGLTTLNLNLIDTPIPMTLVYLLGFALLSIGLWQWLP 82 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 L + N I + Q + + + + E+ Sbjct: 83 FVAKVKKLDILSPSY-SNSEEYYTCKLYDQGSAIAQSDELKQEIANCLHTNAELQQQEEQ 141 Query: 407 QSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNF 464 V + V + G+A+ + G ++ D Sbjct: 142 FRAITQAFPVPVAIARVSDGTIVYGNSHANVLFGVATSELVGNSMPDFYEN--PADWQRL 199 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 LD + E V + W+ + ++ ++ + + + +DI++ Sbjct: 200 LARLD----QKGVVQNEELCVHTINGTPLWVTVSMQVLTLNQEKA--ILSVFHDISD 250 >gi|317130492|ref|YP_004096774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] gi|315475440|gb|ADU32043.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] Length = 696 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 144/557 (25%), Positives = 268/557 (48%), Gaps = 10/557 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + S + + + +P I +LG + GP + +H ++ D R+ Sbjct: 146 FRSLLKNSSSVNCILSAEGNVMYRSPSIEKVLGYKPEELAGP---FFTIVHPDEHDYVRS 202 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 ++ + + + R+R + + + + + + I I +D+TE +++ Sbjct: 203 RFENLLENPDKPQKLDVRLRHKEGNWRTVHVIANNRMD-DPHIEGVIINYHDVTEMREAQ 261 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + I A+ D LT +PNR+ F ++L L + T+ + V+ IDID++K IND LG Sbjct: 262 QKIHHMAYHDYLTDLPNRRYFEEQLEAELQDAKTN-RSKLAVLFIDIDRFKFINDTLGHH 320 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD L + + L+ D++AR++G+ F I++ + + A ++ K + PI Sbjct: 321 VGDKALKEIAEMLVSLVSEKDLIARMAGDEFMILVPHIEALDYVKELADSILKRMESPIV 380 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDR 704 E+ VT SIG +++ S S +LKNA+LAMY AK N E F Sbjct: 381 FDHYELFVTGSIGISTYPESGEDISVILKNADLAMYKAKETKENSFEFFTPEMEENSYKN 440 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ DL A+ N+E L Y P + E++VG+EALI+W+HP G +S F+ IAE+ Sbjct: 441 FALQNDLRRAITNNEFELYYQPKVSASTEKVVGVEALIRWNHPTLGMVSPGHFIPIAEDT 500 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I I ++ + + + + W + PP+ + +N ++ +L L ++ L+ K Sbjct: 501 GLIVPIGEWVFDAVCKQVKRW-ENTGFPPLVVSLNFSAIQMLQKGLVTKVKNLLEKNQVE 559 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 I++ +ES+++ + L L+++GI + +DDFGT S LSYL F+T+K + Sbjct: 560 GHWIEVEMTESLILEHDNDILNKLEGLKQLGIHIAIDDFGTGYSSLSYLKKYKFNTIKLD 619 Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + AI+ II ++ + ++A+ + + L ++ CD +Q + + Sbjct: 620 KSFINDIHTSADNQAIITFIIQLSNQLNMKVVAEGVEIKEQHDILQKLNCDELQGFYFSR 679 Query: 943 PLGFNSILKLLKERFPL 959 P +LL + L Sbjct: 680 PKPVKEFEELLLNQQQL 696 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + ++ ++ + + ++++G +H ++L +H D + + Sbjct: 21 YKELLENFTEAIYVINLEGNFIDYNHGFSSLVGPGEKYLHT---SFLEIVHPEDIELAKK 77 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + R+ + + ++ P+ +G ++ +GIA DIT Sbjct: 78 GFVQTLKGEVLQ-DERLRIYSIEGNEKSIVTSKVPLFGKSGQLVGVLGIAKDIT 130 >gi|144901289|emb|CAM78153.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 833 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 156/594 (26%), Positives = 286/594 (48%), Gaps = 14/594 (2%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRD 426 L+ ++ L V + A + + + LA + S D + + Sbjct: 243 GLLSFSDILASLQYEYVQRLDEALRERDEALLKSRKDLHLARKVIEASLDGIMICNPKGL 302 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 P + + G + G L +H F + + + +G Q E Sbjct: 303 IEFVNPAFSQLTGYQFDEVVGQNPAILQSGLHE---KAFYDRMWQSL-HVQGIWQGEIWN 358 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R + + + I + + +G I +Y + +DI+E+KK+ E I A+ D LTG+PNR+ Sbjct: 359 RRKTGEVYPEWLTINVIRDEDGAITQYAAVFSDISERKKTEERIKNLAYFDVLTGLPNRR 418 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F DRL + + + + +M +D+D +K+IND LG +GD VL + R+ ++ Sbjct: 419 LFTDRLQVAIANAHRHGS-QLAIMFLDLDLFKRINDSLGHGIGDQVLCEVAVRLEHCVRE 477 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D +ARL G+ F ++L ++ A A + + P+ + E E+ VT S+G A + Sbjct: 478 GDTVARLGGDEFVVLLPELDHVEDAAKLADRVISHVKQPLRIDEHELYVTTSVGIAVYPD 537 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLV 723 +T ++KNA+ AMY AK G N + + +++ +R+ ++ L A+ E LV Sbjct: 538 DGLTDETLIKNADTAMYRAKDLGRNSYQLYTPAMNARSFERLAMESSLRHALSRHEFTLV 597 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y I L+ + G+EAL +W HP+ G +S EF+ +AE + +I I ++L+ R Sbjct: 598 YQGKIDLISGRMSGVEALARWRHPEMGLVSPVEFIPLAENMGLISEIGAWVLKAACRQCQ 657 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 SW + +P + + +N+++ + ++ E ++ + ++ P ++L +ESV+M E Sbjct: 658 SWHE-LGLPRVRMAVNVSTLQFREGDVVELVKQALDESGLPPQYLELEITESVLMQRVEE 716 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + +L LR +GI +++DDFGT S LSYL +P D +K + S + AI+ + Sbjct: 717 NAQVLQELRAMGIHISIDDFGTGYSSLSYLKRMPIDALKIDRSFVNDITEDGDGAAIVST 776 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 II +A N++ +A+ + + L GCD IQ V+ P+ ++ L Sbjct: 777 IINLAHNLKLRAVAEGVETQEQADFLRERGCDEIQGFLVSRPVSGEDLVSLFDR 830 >gi|292493169|ref|YP_003528608.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291581764|gb|ADE16221.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 948 Score = 574 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 156/588 (26%), Positives = 283/588 (48%), Gaps = 12/588 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTP 432 ++ + + +L + Q R L + + V D V Sbjct: 356 LIEYLDPLLSTCGSILDAYHNDQRRRDAESRLRLTAKVFESTIEGVIIVDARAYIVDVNK 415 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 I G+ + G + L + +F+ I S G+ Q E + + + Sbjct: 416 AFTHITGMVRQEIIGQHLSVL-RAKQEEPISFQKIWRSIKS--TGQWQGELWSQRKNGET 472 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 + + + + + NS +I Y+ + +DIT +K++ + + A D LTG+PNR FLDRL Sbjct: 473 YPVWMTVSSVRNSKEEITHYVAVFSDITIRKQTEQRLYYLAHHDTLTGLPNRTLFLDRLK 532 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 ++ + N R V+ ID+D++K IND LG +GD +L + +R+ ++ D +ARL Sbjct: 533 HAINHAHRR-NYRVAVLFIDLDRFKFINDTLGHRIGDILLKQVAKRMQANIRAEDTIARL 591 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F +I+ S ++ I A + + P N+ +E+ V+ASIG + + + + Sbjct: 592 GGDEFTVIIESFTDTSVIPLIARKIINACEKPFNINGKELFVSASIGISLYPTDGYDAGM 651 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRL 730 +L++A+ AMY AK +G N + F + + L A+ E L Y PI+ + Sbjct: 652 LLQHADAAMYRAKEKGKNSYQFFTTEINAAAAEHLALENRLRKAIAQGEFQLYYQPIMDM 711 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 IV +EALI+W +P+ G I+ +F+ +AEE +I I ++L+ W + Sbjct: 712 ESGAIVSVEALIRWVNPELGLINPDKFIPLAEETGLIIPIGEWVLQTACAQAKIWNQENT 771 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 P+ I IN++++ + E + ++ KT P+R++L +ES++M N E S L Sbjct: 772 Y-PLRIAINLSARQFQQIDFLERILEILKKTDLLPNRLELELTESMIMDNMEASLETLNA 830 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 L+K+G ++LDDFGT S L+YL P DTVK + S + AI ++ MA + Sbjct: 831 LKKMGCQISLDDFGTGYSSLAYLKRFPIDTVKIDHSFVRDISTDPDDAAITTAVTTMAHS 890 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + ++A+ + ++ L +G + +Q ++ P + +LL+ER Sbjct: 891 LRRKVVAEGVETREQLEFLDNIGVNGVQGYFISYPAPAENFTRLLQER 938 >gi|307824193|ref|ZP_07654419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacter tundripaludum SV96] gi|307734573|gb|EFO05424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacter tundripaludum SV96] Length = 856 Score = 574 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 145/563 (25%), Positives = 262/563 (46%), Gaps = 10/563 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R + + + D + V I G ++ G + L Sbjct: 298 KLAEQEQRIFATAFQTQEGIIVTDANQIIVRVNQAFTIITGYSTEEAIGNKPSMLKSGRH 357 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + F + + + G Q E R D + + + I + +S+ Y+G +D Sbjct: 358 D--NFFYHAMHKTL-HSEGYWQGEIMDRHKDGRIYPKWLTITAVKDSDDKTTHYVGNFSD 414 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE+K++ E I A D LTG+PNR D L L L+ + +M +D+D +K Sbjct: 415 ITERKRAEEHIHYLANFDWLTGLPNRTQLNDHLKYALSLAKRSNG-HLALMFLDLDHFKD 473 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG ++GD +L+ L +R+ L+ D + RL G+ F ++L +++ A A + Sbjct: 474 INDSLGHSIGDALLIKLAKRLRAALREEDTVTRLGGDEFILLLPGV-DAIGAAHVAQKLL 532 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 +IA + ++ +TASIG A + + K+A+ AMY AK G F Sbjct: 533 DTIAESYRIEHYDLILTASIGIALYPEDGEDLEALSKSADTAMYRAKQEGRQCYRFFTQE 592 Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + L A++ S+L + Y P I + D I+G EAL++W HP+ G +S +E Sbjct: 593 MQARSARNLQLVNALRHALDRSQLQVHYQPQISMRDGAIIGAEALLRWQHPELGMVSPAE 652 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE +I I ++L + +W ++ P+ + +N+++ +L E + Sbjct: 653 FIPVAEGSGLILPIGEWVLRCAVQQAKAWVNEGFG-PLIMAVNLSAVQFRHPDLPELVTR 711 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ + P ++L +E V M NP+ + ++ L++ G+ +++DDFGT S LSYL Sbjct: 712 ILDEEGLPPEYLELELTEGVAMHNPQSAIAVMNNLQERGVRMSIDDFGTGYSSLSYLKEF 771 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 +K + S + + I+ +II +AK++ IA+ + E L GCD Sbjct: 772 KVYKLKIDQSFVRDISTDPEDKVIVSAIINLAKSLGLKTIAEGVETEGQQAFLREQGCDE 831 Query: 935 IQDSHVASPLGFNSILKLLKERF 957 +Q + P+ LLK+ F Sbjct: 832 MQGYLFSKPVSAEQFDALLKQGF 854 Score = 91.2 bits (225), Expect = 8e-16, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 64/157 (40%), Gaps = 5/157 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + +++ S+ + + +R A L SG V++ D + +P++ T G Sbjct: 154 MEIERKRNLEEKERVSEVLRLNEDRLYQATLVSGTGVFEQTYGNDSIYCSPELRTHFGWD 213 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500 + + + + I+ +DR + G L ++R+ + + W+ R + Sbjct: 214 ADELVTT-QTFTASIYPDDRKRVIEAVRHAQNSSGNGLLDIDYRIFCRNGEVGWLATRSQ 272 Query: 501 PMSNSNGDILRY---IGIANDITEQKKSLEGILCNAF 534 ++GD+ R +G DIT++K + + A Sbjct: 273 TFFETDGDVSRAVRTVGAVRDITKKKLAEQEQRIFAT 309 >gi|189423772|ref|YP_001950949.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189420031|gb|ACD94429.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 703 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 165/665 (24%), Positives = 309/665 (46%), Gaps = 15/665 (2%) Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356 + ++ + + + FI +G + +++ L + Sbjct: 44 AAALIWLASHPVNLLLLDYTLVDMTGEAFIAAMAEQGSQVPFVVVTGR-----DDSNLAV 98 Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGIFSDGERQSLAVLGSG 415 + K+ +D + L V++ + + Q + R + A + Sbjct: 99 QMIKQGASDFVVKDTALLDRLPVVVSRTLQEAATMQRLCHAEQALRQSELRLARAQRIAR 158 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGY 474 W+WD+ + + +P++ +ILG + W I+ +D R L + + Sbjct: 159 IGSWEWDLQSNGLYFSPELFSILGYDGTAPPDVSLEWFYRQINPSDTCFVRKALSAAIES 218 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R L FR+ + + + +S+G +G D+T++ ++ + I A Sbjct: 219 GRN-LNQTFRIVTCSGEEIVVASQAELEYDSDGRPELLVGTLLDVTDRTRAEQEIHHLAN 277 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LTG+PNR DRL + +A V+ +D+D++K +N++LG GD +L + Sbjct: 278 YDTLTGLPNRNLLHDRLQQAIVQAARVQG-SVGVLFLDLDRFKGVNELLGHRAGDQLLRT 336 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + R+ ++ D LAR G+ F IIL ++ I+ A + I+ P + ERE+ + Sbjct: 337 VAERLRVCVRESDTLARAGGDEFVIILSVVSDEDGISSAASKILAIISEPFVIEERELYL 396 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712 TASIG A + + +LK+A+LAMY AK N+ + F + +R++++ L Sbjct: 397 TASIGVAVYPTDGADVQSLLKHADLAMYQAKDMDRNNFQFFSSDLNVKVMERMVLESSLR 456 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+E E L+Y P + ++ +VG EAL++W HP G IS +F+ +AEE +I +I Sbjct: 457 RALERDEFQLLYQPQVDVITGSVVGFEALLRWHHPDLGTISPEKFIPLAEETGLILSIGE 516 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L R W+D P+ + +N++ + L E + A++ +T + P ++L Sbjct: 517 WVLRTACRQAKIWQDAGLR-PVRMAVNLSGRQFRMK-LDEIVAAILLETGFDPRWLELEL 574 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890 +ES++M N + LL L +G SL++DDFGT S L+YL + P + +K + S + Sbjct: 575 TESILMRNASDNIELLQALTAMGCSLSIDDFGTGYSSLAYLKHFPLERLKIDRSFVRDVT 634 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + AI + II MA ++ + A+ + ++ L R GC +Q + P+ S Sbjct: 635 TNPDDRAIAKIIIDMAHTLKMEVTAEGVEEREQLELLKRYGCREMQGFFFSRPVPAASAE 694 Query: 951 KLLKE 955 KLL++ Sbjct: 695 KLLRK 699 >gi|296134149|ref|YP_003641396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola sp. JR] gi|296032727|gb|ADG83495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola potens JR] Length = 692 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 150/586 (25%), Positives = 279/586 (47%), Gaps = 20/586 (3%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 I+ G + + + + ER + + D + + L Sbjct: 105 AIIGGIETFEDITERKKTEEALAESEERYRTLFERTASPILVTDTKGNYIDCNEAACQFL 164 Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 L+ + +R+ L + G ++ E+ ++ M + Sbjct: 165 ELSREELLTLNVRDLL----PKGWEKRPQAHKILWKTE-GVIEAEYLIKNR---IKIMEL 216 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + P G + G+ DITE+K++ E + A+ D+LTG+PNR F ++LT + Sbjct: 217 TVTPAIW-QGKAV-VFGVGKDITERKQAEEKMRRMAYYDSLTGLPNRAFFKEKLTAAIIK 274 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S + ++ +D+D++K +ND++G VGD +L + +R+ + + ++ARLSG+ F Sbjct: 275 S-RSKKQKLAILFLDLDRFKTVNDIMGHDVGDQLLKDVAKRLKKRVGKGRVVARLSGDEF 333 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L + + + FA + +++ P + R VT SIG + + + +LKNA Sbjct: 334 IILLPNVSRIEDVRKFAEDVCENLRKPFTIAGRNFHVTTSIGITVFPDNGEDAKTLLKNA 393 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK +GGN E + + + ++ L A+E E L Y P + M EI Sbjct: 394 DIAMYKAKEQGGNSYEVYTFAMNEMAMAKLELENSLRAALERHEFTLFYQPQVHGMTGEI 453 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG+EALI+W HP+ G IS +EF+ +AEE +I I ++L W+ Q PI Sbjct: 454 VGMEALIRWKHPEKGLISPAEFIPVAEETGLIVPIGEWVLYTACMQNKYWQ-QKGYAPIR 512 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++++ L + ++ +T P+ ++L +ESV M N E + L+ +L+ +G Sbjct: 513 VAVNLSARQFQQRNLVSMIARVLKQTGLDPNCLELEITESVAMQNLENTIKLVKQLKDLG 572 Query: 856 ISLTLDDFGTKCSLLSYLGYIPF-DTVKFNGSLMTGSTEK----RIAILRSIIPMAKNIE 910 + +++DDFGT + LSYL P DT+K + S + ++ A++ ++I +AKN++ Sbjct: 573 VHISIDDFGTGYASLSYLKLFPPIDTLKIDRSFVRDISQNPRNASDALVATMIVLAKNLK 632 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++A+ + E +K L CD Q P+ + L + Sbjct: 633 LKVVAEGVENEKQLKFLLERQCDEFQGFFFGKPVPAKEFEQFLTRQ 678 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 6/114 (5%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 ++ + R + A + G + + G Y + F Sbjct: 17 IPSAIFTVNTNRIITSINNKAANLFGYPAEEIVGRSCTEFCY------GPCCSHCRLFDD 70 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 E ++ ++ I + ++ G I+ I DITE+KK+ E Sbjct: 71 GVPKPATGEGIIKTRSGLVRIILKNIDLLRDNEGAIIGGIETFEDITERKKTEE 124 >gi|332528694|ref|ZP_08404671.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC 19624] gi|332041760|gb|EGI78109.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC 19624] Length = 907 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 173/747 (23%), Positives = 323/747 (43%), Gaps = 22/747 (2%) Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287 VL G L ++ + + + M L + + + Sbjct: 151 VLTDSQTGGGTLRLILPILDAWGRPRHFVVAELSADYFNMLQRMALETDDTWSSLSMADG 210 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 + + +A + + S + + + G + + L+ Sbjct: 211 TLLGLLASDPRTAQAAATWRLDTTASAVRSSPVPGVHIVDVAGQPRRLLVRRTVGSRELM 270 Query: 348 FIWFIGLWMAITKRLDNDIIQ-PALVGGLVLIVILIGFTVIQHVLATGYFS--------- 397 + L ++ + Q A V + L V+++ + + Sbjct: 271 LDQPLVLTLSRELSPLDGPWQRLATVYAITLAVLILAGCGMLRLAQIRRARWDGLMHAQD 330 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 +R LA+ G+ +W+ I D + A I G G + +W +H Sbjct: 331 HERIEHLQRMELALEGAVLGLWELSIPDDHMRVDARAAAIQGYQFGEIEARGFDWRADLH 390 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIA 516 +D D F +G + + E R+R D + W+ R + +++G L +G Sbjct: 391 PDDADFFLQQFAQHLGGNTSKFEVECRLRRKDGGWVWVQCLGRVIQRDASGQPLHVLGTR 450 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ +K+ I AF D+LTG+PNR+ +RL L S + +++ID+D + Sbjct: 451 MDISARKQHETEIERLAFYDSLTGLPNRRLLHERLDRGLVASEERGQI-GAIVLIDLDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSLKIA 631 K +ND LG +GD +LVS++ R+ ++++ D +ARL G+ F ++L S Sbjct: 510 KSLNDTLGHDLGDQLLVSVSARLRQIVRAQDTVARLGGDEFVLLLESLGGSWAEARRNAE 569 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + + ++ P +L +R+I T S+G + ++L+ A++AMY AK +G N Sbjct: 570 TLGRNLLQRLSHPYHLADRQIYSTPSLGITLFAGGSSKLDDLLRQADMAMYEAKAQGRNT 629 Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F ++ DL A+E EL L Y PI+ I+G+E+L++W HP+ Sbjct: 630 LSFFEPEMQAHTSANAQLQSDLHRALERCELLLHYQPILD-RKRRIIGVESLVRWQHPEM 688 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S + F+ +AE+ +I + ++LE+ R +++W A+ +F +NI+++ L + Sbjct: 689 GMVSPARFIPVAEQCGLILPLGDWVLEQTCRQLVAWAAHASTAELFAAVNISARQLSQPD 748 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + +T SPSR+KL +ES+ + + E + L++ GI +LDDFGT S Sbjct: 749 FVVKVLETVRRTGASPSRLKLELTESMFLLDVEGVIEKMAALKRHGIGFSLDDFGTGYSS 808 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P D +K + S ++ AI +II +A N+ +IA+ + + + L Sbjct: 809 LCYLQRLPLDRLKIDKSFVSDLPDNANSAAIGAAIIGLAHNLGLQVIAEGVENQEQWQFL 868 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954 CD Q A PL + + L Sbjct: 869 LEGQCDAFQGYLFAPPLPVEELDRRLS 895 >gi|77918947|ref|YP_356762.1| EAL and GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77545030|gb|ABA88592.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter carbinolicus DSM 2380] Length = 1274 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 150/557 (26%), Positives = 266/557 (47%), Gaps = 13/557 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHIN 459 S ++ S A+ S V D P + G + L + + Sbjct: 684 SQLKKLSRAIEQSPVSVVITDPEGRIEYVNPKFTQLTGYTLEEVIAQNPRILKSGNLLPS 743 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D+ + E + D W I P+ + +G I+ +IG+ DI Sbjct: 744 VYDSLWKTI-----TSGKEWYGELENKRKDGSIFWESASISPLFDESGKIINFIGVKEDI 798 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K + + + A D LTG+ NR D L L S L V+++D+D++K I Sbjct: 799 TQRKLNEKRLEYMATHDGLTGLANRTLLYDHLEIALHQSQRSKKL-VAVILLDLDRFKVI 857 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG VGD VL ++ +R+ + ++ D +ARL G+ F ++L ++ A + + Sbjct: 858 NDSLGHLVGDQVLKAVGQRLKQYVRSTDTVARLGGDEFVVLLTDVRDTTAAGKIAHNLLR 917 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVS 698 + P L RE+ V+AS G + + + +L+NA++AMY AK G G + S ++ Sbjct: 918 KLNEPFFLHGRELYVSASFGICLSETDNVDGTILLRNADIAMYKAKAEGCGLYFYSHEMN 977 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++ L A+E +E L Y P + I+G EAL++W HP+ G I SEF+ Sbjct: 978 EHLIKTLEMENSLRQALEKNEFQLYYQPKVEHATGRIIGCEALLRWRHPQRGMIPPSEFI 1037 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELCEGMQAL 817 +AEE +I I ++L R W + +PP+ + +NI+++ L + +++ Sbjct: 1038 PLAEETGLIVQIGHWVLAEACRQSKIW-ETEGLPPLTMAVNISARQFYQGENLIQAVKST 1096 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + ++ PS+++L +ES+VM + + + +++++G+SL+LDDFGT S L+YL P Sbjct: 1097 LERSQLVPSQLELELTESMVMKDAVNAERTMRKIKQLGVSLSLDDFGTGYSSLNYLRSFP 1156 Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D++K + S + AIL SII +A + +A+ + + + GC+YI Sbjct: 1157 VDSLKIDRSFILDIASDASSAAILNSIIAIAHTLGLQTVAEGVENNDQLALVANCGCNYI 1216 Query: 936 QDSHVASPLGFNSILKL 952 Q + PL + L Sbjct: 1217 QGYLFSRPLPPEDFVAL 1233 Score = 83.8 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 18/174 (10%) Query: 406 RQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + +L V S +++ W V+ + +I+ G A + ++ +H D D Sbjct: 141 QANLIVDNSPAVLFHWKAEDGWPIVSVSKNISQ-FGYAQEELMSGDFSYATLVHPKDLDR 199 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 L + + Q E+R+ + W+ R ++ G + Y G DI E+K Sbjct: 200 LEEELQAQINRGERIFQTEYRIITKQKEVRWVDERTFVERDAAGKVSHYQGFIIDIDERK 259 Query: 524 K------SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + +L A + L + L LD + R Sbjct: 260 RTELVMAARMRLLQLATNNTLAQL---------LEATLDEAEALTESRMGFYHF 304 Score = 74.2 bits (181), Expect = 1e-10, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 6/150 (4%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSM 445 ++ + Q + + + + +++++++ ++ P + I G Sbjct: 546 LEDITEQLETQQTLQKNKKNIQQLAENTEAVLYEYNLSDNKWTYMAPQVERIFGYKPEDW 605 Query: 446 HGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + WL +H D R L + E+R D W+ IR S+ Sbjct: 606 IDN-QFWLDRVHEADWGKASREELSKLNQQEAHSI--EYRFYKKDGSIVWVRDIIRIESD 662 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + G+ DIT+ K+S + + Sbjct: 663 AENKLC-LHGLLIDITDSKQSESQLKKLSR 691 Score = 43.0 bits (100), Expect = 0.24, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 13/178 (7%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 +A+ + ++ +T ++ L + + ++ V + Sbjct: 388 IVAVLGMANKAEAYTQRDAEAASLLADFAWTTLERKLT----EESLQVSEQKYRHIVDHA 443 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGL--ASGSMHGPIRNWLPYI---HINDRDNFRTILD 469 + ++ P +A IL + + R+ L + + DR+ ++D Sbjct: 444 PFGITRTTRDGKLISANPAMANILKYDSSQELLETIGRSSLQEVIFSNPADRE---DMVD 500 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + L +R D + R +S Y DITEQ ++ + Sbjct: 501 KVIISNSWCLHN-LSLRCKDGSLATCRVHSRRLSEKGSQNWEYENFLEDITEQLETQQ 557 >gi|220933673|ref|YP_002512572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] gi|219994983|gb|ACL71585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] Length = 685 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 159/679 (23%), Positives = 274/679 (40%), Gaps = 17/679 (2%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343 IT G +A L +S + + L + +R + Sbjct: 9 RITLIGGVLLAALTLVSGFAVYAVMQRQLEAVLVNSLQSSL--------HSDRRLFETEI 60 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + + + + + + +++ T + + Sbjct: 61 RGSVVNALTVSTRPFVIQNLARLREAPEDASAAHSLQRLVRRLVKSQQQTAEANARLRDL 120 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 ER A+ +G VWD D+ ++ + +LG + W +H +D Sbjct: 121 EERWRFALDSAGAGVWDLDLSAGKILLSVRCKHMLGYEEHEIGASAEEWQALVHRDDAPA 180 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ 522 V +E R R D + W+ R + NG R IG DI+E+ Sbjct: 181 LIAACQRLVDGEVQSFTHEHRKRCKDGSWKWVQARGMVAARDENGAPTRLIGTYIDISER 240 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K++ E I A D LT +PNR+ FLDRL + ++ID+D++K++ND Sbjct: 241 KRAEEIIQQQANFDPLTKLPNRRLFLDRLDQQIAKCQRTGAALAL-LLIDLDEFKEVNDT 299 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD +L RRI ++ D +ARL G+ F +IL + + A + +A Sbjct: 300 LGHDVGDVLLQEAARRISGCIRDTDTVARLGGDEFTVILSDLTGKAHVEEIAQKLISRVA 359 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700 P L E ++ASIG + E++K+A+ AMY AK G N F + Sbjct: 360 EPYYLREGVAHISASIGITLYPGDAEDMGELMKHADQAMYSAKRLGRNRFCYFTHALQEA 419 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ + +L AV + + PI+ L I EAL++W HP+ G + +EF+ + Sbjct: 420 AQKRLRLSRELRQAVNQGQFEAHFQPIVELASGRIQKAEALLRWHHPERGLVGPAEFIPL 479 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL--CEGMQALI 818 AE+ +I+ + ++ R WRD+ I + +N++ E + Sbjct: 480 AEDTGLIEGVGDWVFREAVRRARVWRDRFG-TDIQVSVNMSPLQFRSEGAERVESWLYHL 538 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + +I + +E++++ + L R R GI + +DDFGT LSYL P Sbjct: 539 EEMGVRGEQIVIEITENLLLHAHDEVTRQLFRFRDAGIQIAIDDFGTGYCTLSYLKQFPI 598 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S + +A+ ++II MA + +IA+ + E + L+ GCD+ Q Sbjct: 599 DYLKIDRSFVRNLENDPNDVALSKAIIVMAHELGLKVIAEGVETEGQRRLLSDAGCDFAQ 658 Query: 937 DSHVASPLGFNSILKLLKE 955 A L LL + Sbjct: 659 GYLFARALPAEDFEDLLND 677 >gi|186686857|ref|YP_001870050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nostoc punctiforme PCC 73102] gi|186469209|gb|ACC85009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nostoc punctiforme PCC 73102] Length = 1043 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 160/584 (27%), Positives = 286/584 (48%), Gaps = 8/584 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442 ++ ++ + +R + D++W + + P + G + Sbjct: 461 LGMVTNITDRKLAEAALQESKQRLDGILCSLEDVIWSISADTFETLYLNPAALKVYGYSV 520 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 W IH D+ + + + E+R+ D Q W++ R + Sbjct: 521 SEFFENSNLWFEVIHPEDQQQVHAAIQPLF--LTEKQELEYRIVRPDGQVRWLLNRSHLI 578 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 N++G +R GIA DITE+K E ++ NAF D LTG+PNR F+DRL + + Sbjct: 579 YNASGLPIRIDGIATDITERKLLEEKLVHNAFYDALTGLPNRILFIDRLEQAIAQMKHNP 638 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + V+ +D+D++K +ND LG VGD +LV+L +R+ + L+ D +ARL G+ F I+L Sbjct: 639 DDLFAVLFLDLDRFKVVNDSLGHLVGDQLLVTLAQRLQQCLQPDDTVARLGGDEFTILLS 698 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 D A + +++ P NL E+ +TASIG A T+ + +++L++A+ A+Y Sbjct: 699 HIQTIEDATDIAKHIHQALKPPFNLCGYEVFMTASIGIALGTNKYVQPADLLRDADTALY 758 Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK + F + + + ++ DL AVE EL + Y PII + +I G EA Sbjct: 759 RAKEQSQAGHIVFDTTMYDRAVELLQLETDLRWAVERQELCIFYQPIICIKTGKITGFEA 818 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILIN 799 L++W HP+ G IS +EF+ +AEE +I I ++L + + W+ Q P+ + +N Sbjct: 819 LVRWQHPERGLISPTEFIPVAEETGLIIPIGQWVLTESCKQLRQWQLQFPAIKPLTLNVN 878 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ K L E + ++ T S S +KL +E+ ++ +P+++ +L +L+ G+ L Sbjct: 879 LSGKQFSQPHLIEQISQILQDTGLSSSNLKLEITETAIIASPQKATSILKQLKAFGLQLC 938 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P D +K + S + AI+R+I+ +A N+ +++A+ Sbjct: 939 IDDFGTGYSSLAYLHNFPIDVLKIDRSFVNRIDSDTEQFAIVRAIVTLADNLGMSVVAEG 998 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + + +L + C Q + PL LL ++ Sbjct: 999 VETINQLAQLQLLQCQQAQGYLFSKPLDQEQARNLLASGQSFLR 1042 Score = 80.4 bits (197), Expect = 2e-12, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 4/133 (3%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + E+ V + + +W D +AT+LG M G Sbjct: 347 QALEALGKQEEQYRRIVQTATEGIWLLDKDNCTTFVNQQMATMLGYTIEEMLG--ATLFS 404 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 ++ + + L + ++F+ R D W II P+ + G+ +G Sbjct: 405 FMDSEGLEIANSCLSRRYQGIQE--AHDFKFRCQDGSDLWAIISCAPLLDDQGNYAGALG 462 Query: 515 IANDITEQKKSLE 527 + +IT++K + Sbjct: 463 MVTNITDRKLAEA 475 Score = 70.0 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 8/143 (5%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSM 445 + Q D A+ S + + D + P I G + + Sbjct: 212 QSVEKISPLQEPEVDLHLMERAIAASSNGIILTDPNQPDNPIIYVNPAFELITGYCASEV 271 Query: 446 HGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G +L ND + L S + +R R DN W + + P+ + Sbjct: 272 IGRNCRFLQG---NDLEQVALQELRSAIQEQREC-HVILRNYRKDNFLFWNELYLAPVFD 327 Query: 505 SNGDILRYIGIANDITEQKKSLE 527 ++G + +IGI DIT ++LE Sbjct: 328 NSGYLTNFIGIQTDITHHLQALE 350 >gi|119776759|ref|YP_929499.1| signal transduction protein [Shewanella amazonensis SB2B] gi|119769259|gb|ABM01830.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain protein [Shewanella amazonensis SB2B] Length = 709 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 145/580 (25%), Positives = 264/580 (45%), Gaps = 12/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L T + A + + + + ER +L + G+ D WDWD+ + V +P ++G Sbjct: 115 LQVITCFTDISALKHAEEALKASEERLNLMLQGANDAAWDWDLRQHTVYYSPRWWQMIGR 174 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRI 499 + W+ +H +D ++ EFR++ + ++ R Sbjct: 175 EPDELEPTEDLWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRG 234 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + ++G LR G D+TE+K+S I A+ D LTG+ NR ++RL + L Sbjct: 235 VILRGADGTPLRMSGTNMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCE 294 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + +++ID+D +K +ND +G VGD +L + R+ + ++ +++ARL G+ F I Sbjct: 295 RSKQI-GALLIIDLDNFKILNDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVI 353 Query: 620 ILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++ + + +R + P L +++ + SIG A + + E+L Sbjct: 354 VMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELL 413 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K A++AMY AK G N + F + +RV ++ DL V +E L P + Sbjct: 414 KQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVD-AC 472 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + G E LI+W HP G + ++F+ +AE+ +I I ++L + ++ W ++ Sbjct: 473 GRLCGGEVLIRWQHPVRGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLA 532 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I + +N++ + D+ E + A+I +P+RI L +ES++ N E L + LR Sbjct: 533 QISLSVNVSVNQVRDHNFVERVLAIIDDCGANPARIMLELTESLMAENVEEIILKMNALR 592 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 G+ ++DDFGT S LSYL P +K + S + + I II +AK + Sbjct: 593 VRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQSFVREIALNQHDAVITEIIITLAKKLG 652 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 ++A+ + E + L C Y Q P Sbjct: 653 LGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKPCAIELFA 692 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 7/127 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR---NWLPYIHINDRDN 463 S + + + + + ILGL++ M G + W + Sbjct: 7 FSDLIEYIPVGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWRFDF-PDGTPM 65 Query: 464 FRTI--LDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 ++ + + G +V W++ P +G++L+ I DI+ Sbjct: 66 SLADYPVNRVLKCKEGVWGMILKVHRPVAKDVAWVLCNAFPSIGEDGEVLQVITCFTDIS 125 Query: 521 EQKKSLE 527 K + E Sbjct: 126 ALKHAEE 132 >gi|326794109|ref|YP_004311929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] gi|326544873|gb|ADZ90093.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] Length = 718 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 151/558 (27%), Positives = 268/558 (48%), Gaps = 11/558 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + R + A+ + VW+WDI +D TP T+LG + G + L IH Sbjct: 152 ELVEADARMNEALKVTNIGVWEWDIEKDVWFATPSYFTMLGYSPIDGLGDRQKELAKIHP 211 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIAN 517 +DR++ + S + R Y+ R+ A+ + W+ +R N +G R +G+ Sbjct: 212 DDREDVLNTIKSVLNGARTSYHYQCRICHANGAYRWIGVRCTVTEMNDDGKPSRMLGVRI 271 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI KK+ + + A D+LT +PNR S D +D R ++ +D+D++K Sbjct: 272 DIDALKKTQQQVEWLAKHDSLTQLPNRASLFDFFQKCID----HGTDRMALLFVDLDRFK 327 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG +GD +LV++ +R+ + + R G+ F I+L + + A + Sbjct: 328 NVNDTLGHRIGDQLLVAVAKRMLSTIAEGSCVVRQGGDEFIILLPN-TSESDAQKVATDL 386 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 R +++ L + ++ +T SIG + + + K A+ AMY AK G N F Sbjct: 387 RMALSKRFQLEQHQLIITPSIGISLYPKDGRDLDTLYKRADTAMYRAKQSGRNRFAMFTQ 446 Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 ++I+ L A+EN+EL L Y P L D+++V EALI+W+ G +S Sbjct: 447 EMQAHSTRVLLIENALHSALENNELSLHYQPQFSLSDKKLVASEALIRWNSHSLGRVSPG 506 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ IAE+ I AI +++ R I W D PP+ + IN++ + +L + Sbjct: 507 EFIPIAEDSGQIVAIGEWVITESIRQIREWID-LGYPPLKVAINLSYAQFQEPDLANFIA 565 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + S ++L +E + M +PE + ++ IG+ ++DDFGT S LSYL Sbjct: 566 QTLEACRVPSSLLELELTERIAMDDPESAIEVINAFHDIGLETSIDDFGTGYSSLSYLQK 625 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P +K + S + E ++I+ +II +AK + IA+ + + + ++T +GCD Sbjct: 626 LPVYKLKVDQSFVRNMINDENNLSIVSAIIALAKKLGMRTIAEGVETQEQLDKITSLGCD 685 Query: 934 YIQDSHVASPLGFNSILK 951 +Q + P+ + + Sbjct: 686 EVQGYLLGHPVPPDEFEQ 703 >gi|254000138|ref|YP_003052201.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253986817|gb|ACT51674.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 751 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 162/732 (22%), Positives = 303/732 (41%), Gaps = 18/732 (2%) Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN-RWHAKVGYITFSGIACIAI 295 + + A + ++ +L+ F+ W + I + Sbjct: 20 YLWQPPLLWTYIISDLMIAVAYYSIPMALVYFVRKRPDLQFNWIFVMFSIFIFACGTTHL 79 Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL------IFI 349 L + + P A ++ ++ + + +A+ + L + Sbjct: 80 LSLWTIWNPD---YWADASMKAVTGVASLVTAIMLWRLMPQALRIPSTRQLEETVERLEH 136 Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 +A + LV + I + + Q ++++ +R + Sbjct: 137 EVEERELAERSLAAFNDTLETLVQQRTAELEEINRLLKLEIDLRREAEQTLYAEKQRAVV 196 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTIL 468 + GD V D P + G ++ G ++ + R + Sbjct: 197 TLQSIGDGVITTDKQSRVNYLNPVAERMTGWSNAEAQGKPLLEVFRIVNESSRKLVPNPV 256 Query: 469 DSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 D + + L + + + P+ + +G++L + + +D++E + Sbjct: 257 DVVLQHGEIYGLANHTALIGRHGNEYAIEDSAAPIRDQDGNVLGVVLVFHDVSEARNMAN 316 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A D LTG+PNR DRL L ++ D +M +D+D +K IND LG V Sbjct: 317 KMTYLAEHDYLTGLPNRLLLNDRLNQALTIARRDQEF-IALMFLDLDHFKNINDSLGHEV 375 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + RR+ L+ D ++R G+ F I+L N A+ A + + +P + Sbjct: 376 GDQLLKMVARRLESCLRASDTISRQGGDEFMILLPELTNYFSPAEVAEKLLAAATVPYEI 435 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705 EITV+ASIG A + + KNA+ AMYHAK G N+ + F ++ + Sbjct: 436 GSHEITVSASIGIAVFPDDGENGELLTKNADAAMYHAKSLGRNNYQFFTRAMNERVMEIA 495 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ L AVE +E L Y P I + ++VG EALI+W HP WG ++ F+ IAE+ Sbjct: 496 ELESKLRRAVERNEFVLYYQPKIDIRTGQVVGAEALIRWQHPSWGLVAPDRFIPIAEDSG 555 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I+ I L+++ R W+ I + +N+++ L + + + ++ + P Sbjct: 556 LIRPIGLWVMREACRQNQEWQAAGLAR-IPVAVNLSTVQLRQHNFLQEVSEILLMSGLEP 614 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++L +ESV + L +LR +G+ L LDDFGT S LSYL +P + VK + Sbjct: 615 DYLELEVTESVAIHAETEVINWLHKLRSMGVKLALDDFGTGYSSLSYLKRLPINNVKIDK 674 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + I+ +II M+ + +IA+ + ++ L + GCD +Q + P Sbjct: 675 SFIRDIETDPDDATIITAIIRMSHGLRLNVIAEGVENINQLEFLKKEGCDQMQGFIASRP 734 Query: 944 LGFNSILKLLKE 955 + + LL+ Sbjct: 735 VPADEFALLLQN 746 >gi|126658376|ref|ZP_01729525.1| hypothetical protein CY0110_27490 [Cyanothece sp. CCY0110] gi|126620308|gb|EAZ91028.1| hypothetical protein CY0110_27490 [Cyanothece sp. CCY0110] Length = 1242 Score = 572 bits (1475), Expect = e-160, Method: Composition-based stats. Identities = 166/580 (28%), Positives = 285/580 (49%), Gaps = 8/580 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILG 439 L +I + Q ++ +R + D+VW +D + P G Sbjct: 657 LGSLGMITDISQRKKTEQALYESEQRLEGILTSIQDVVWSFDANFSRLIYINPAAQITFG 716 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 ++ W I +D++ + + G +Y++R+ DNQ W+ RI Sbjct: 717 FLLEELYKNPNLWWQLIDTDDQELVQ--YHRQIVKEMGHTEYKYRIIRKDNQIRWLSSRI 774 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 R + + GD++R GI +DITE+K++ E + NA D LT +PNR F+DRL + Sbjct: 775 RCVYDDKGDLIRIDGIDSDITEKKRAEEQLQYNATHDPLTNLPNRILFMDRLEHAIARQK 834 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 N V+ +D+D++K IND LG A+GD +L + RR+ + L D LARL G+ F I Sbjct: 835 RHLNFTFAVLFLDLDEFKVINDSLGHAIGDQLLQEIARRLEDGLCSDDTLARLGGDEFAI 894 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + K A + + P L ++I + SIG A + + +SE+L++A+ Sbjct: 895 LLEDIEDIKKAIKIAQQIHLDLIKPFVLQGQDIFINTSIGIALNSPAYEAASEILRDADT 954 Query: 680 AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G F ++ R+ ++ DL + + E L Y PII L ++ G Sbjct: 955 AMYRAKADGKACYAIFDRQMHERAVSRLKLETDLRIGINKQEFSLYYQPIISLKTGKLTG 1014 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFI 796 EALI+W+HP IS +F+ +AEE +I I + L+ + + W + + + Sbjct: 1015 FEALIRWNHPHKKLISPDQFIPVAEETGLIIPIGEWTLKEACQQLKIWHQKYPRYSHLKV 1074 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++SK L L + + + T +KL +E+++M N + + +L ++++ I Sbjct: 1075 GVNLSSKQLKYTNLLDTIDQTLKDTQLDSRYLKLEITETLLMENLQAATKILLKIQERDI 1134 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914 + LDDFGT S LSYL P +T+K + S + I+R+I+ +A + +I Sbjct: 1135 EICLDDFGTGYSSLSYLHRFPVNTLKIDRSFVRLMEPHNENVEIIRAIVTLAHILGLDVI 1194 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + ++ + +L R+GC+ Q A PL + + KLLK Sbjct: 1195 AEGVETQLQLTQLQRLGCEQGQGYFFAKPLPVHEVEKLLK 1234 Score = 94.2 bits (233), Expect = 1e-16, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 4/144 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + Q + E+ V + + +W D +A +LG Sbjct: 535 LVSLRDITENYEAQQALSDSEEKYRQIVETATEGIWITDQDNKTTFVNQQMAQMLGYKIE 594 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 M N ++ D + + ++FR R D + W I+ P+ Sbjct: 595 EMIDK--NLFDFVDFEDNARVQKNIQDRSRGITETHDFKFRCR--DGKELWTIVSTNPLF 650 Query: 504 NSNGDILRYIGIANDITEQKKSLE 527 + + L +G+ DI+++KK+ + Sbjct: 651 DHQENYLGSLGMITDISQRKKTEQ 674 Score = 86.9 bits (214), Expect = 2e-14, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 4/160 (2%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + V ++ +TV V + E+ L S + D Sbjct: 283 GSYRWLAWTSVASVEEKMI--YTVAHDVTEWKKIEAALRKSEEKFRLLFDKSPTAMGLVD 340 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + ++G + + H +D + + + + + + E Sbjct: 341 MKGQLINVNEAFCQLVGYGAEELLTKGCA--DITHPDDLEKEKQLFNQLLSGEINSFRLE 398 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 R + Q + + + + + G+ L + DIT+Q Sbjct: 399 KRYIKKNKQIIYGLHQATLIRDIEGNPLHLLSQIIDITQQ 438 Score = 65.7 bits (159), Expect = 4e-08, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%) Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 P A LG + + +L ++H D L++ + ++ +E R R D Sbjct: 226 INPIFARTLGYSVAELKSKP--FLEWVHPEDVTTTLEQLENLIKGKQVPY-FENRYRCHD 282 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + W+ +A+D+TE KK Sbjct: 283 GSYRWLAWTSVASVEEK----MIYTVAHDVTEWKK 313 >gi|71907676|ref|YP_285263.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71847297|gb|AAZ46793.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 827 Score = 572 bits (1474), Expect = e-160, Method: Composition-based stats. Identities = 150/633 (23%), Positives = 279/633 (44%), Gaps = 10/633 (1%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG--FTV 386 + +R +L+ A R D I+ L +L + + Sbjct: 186 MAIHPDDRQRVLLEWRAAALGEATFQTEARFLRADGSIVWARLNAAAMLDGLHLRGHVQT 245 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 ++ + +F + ER + + GD V ++ D + G + Sbjct: 246 VEDISERKITEDALFEEKERAQVTLNSIGDAVLTTNLKGDVTYLNLVAEMMTGWPREAAI 305 Query: 447 GPIRN-WLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G + ++ R+ + R L + + D + P+ N Sbjct: 306 GQPLSEVFRILNGTTREVAPNPAQLAIRENRTVGLAADSILIHRDGLEAAIEDSAAPIHN 365 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G + + + +D++E + + A D LTG+PNR +RL+ + + + Sbjct: 366 RDGQVAGAVIVFHDVSESRAMALKMAHLAQHDFLTGLPNRALLTERLSRAIGQARRHNK- 424 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R ++ +D+D +K IND LG AVGD +L + R+ ++ D + R G+ F I+L Sbjct: 425 RVGMLFLDLDYFKHINDSLGHAVGDQLLQQVAERLIVCIRDTDTVCRQGGDEFVILLAEI 484 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A A + + A P + E+ V+ SIG + + + + ++KNA+ AMYHA Sbjct: 485 EQARDAAPIAEKLLAAFAEPCLIAGNELHVSLSIGISIYPDDGMDADTVMKNADTAMYHA 544 Query: 685 KHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N+ + F + + +L A+ E L Y P I L ++G EALI Sbjct: 545 KANGRNNYQFFTTEMNTRAVRRLFIEGNLRRALRQGEFMLYYQPKIDLASGMMIGSEALI 604 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W P+ G + +F+ IAEE +I I ++L R + +W++ + + +NI++ Sbjct: 605 RWQDPEHGLVYPKQFVPIAEESGLIVPIGSWVLREACRQVRAWQESGL-VAVPVSVNISA 663 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + + EG+ ++ +T PS ++L +ES++M + E S +L L+ +G+ L +DD Sbjct: 664 VEFRHKDFLEGVALILKETGMLPSYLELELTESILMHDAESSATVLEALKTMGMQLAIDD 723 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P +T+K + S + +I+ ++I M KN++ ++A+ + Sbjct: 724 FGTGYSSLSYLKRFPINTLKIDQSFVHDIAIDPDDASIVGAMIGMGKNLKQRVVAEGVET 783 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 E + L + CD Q PL + +LL Sbjct: 784 EEQLAFLRTLHCDEGQGFLFGRPLPADEFARLL 816 Score = 86.5 bits (213), Expect = 2e-14, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 6/193 (3%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF--TVIQHV 390 G AV + + + L A + + +Q LV ++ + ++++ Sbjct: 65 GQGIAVFEQVSRLAANALILILSSADDEEVARLAVQNGADDYLVKGLVDAHWLPRTLRYL 124 Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + Q + R S ++ DI + V T I GL G Sbjct: 125 IERKTTRQALTLSEARFRAMSDASPLGIFVSDIHGECVYTNAAYHKISGLNLEQTLGT-- 182 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 NW IH +DR + Q E R AD W + M + + Sbjct: 183 NWSMAIHPDDRQRVLLEWRAAALGE-ATFQTEARFLRADGSIVWARLNAAAMLDGL-HLR 240 Query: 511 RYIGIANDITEQK 523 ++ DI+E+K Sbjct: 241 GHVQTVEDISERK 253 >gi|220908650|ref|YP_002483961.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] gi|219865261|gb|ACL45600.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7425] Length = 1094 Score = 572 bits (1474), Expect = e-160, Method: Composition-based stats. Identities = 144/579 (24%), Positives = 277/579 (47%), Gaps = 13/579 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-AS 442 VI+++ + E+ + + ++ ++ P +A I G + Sbjct: 503 IAVIRNITKRKRAENELRQAEEKYRSIFENATEGIFQSSPSGSYISANPALARIYGYDSP 562 Query: 443 GSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + + ++ + R F + S + + +E +V D W+ R Sbjct: 563 QELQHHLTDIGRQLYVNPDRRQQF---VHSILEQGQVT-DFESQVYRKDGSVIWISENAR 618 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + G+IL + G DI+ +K++ I AF D LTG+PNR F DRL L + Sbjct: 619 AVRDRQGNILYFEGTVEDISARKQAELTIHYQAFHDLLTGLPNRALFDDRLNQALADARR 678 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 +L V +D+D++K IND LG A+GD +L + +R+ L+ D +AR G+ F ++ Sbjct: 679 YQHL-LAVFFLDLDRFKVINDTLGHAIGDQLLQQVAQRLLPCLREIDTIARWGGDEFTLL 737 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L A + S+ P +L + +TAS+G A + + +L+NA+ A Sbjct: 738 LPHVQTPADSVKIAERLLASLKPPFSLKGHNLHITASLGIALYPHDGEDGTTLLRNADAA 797 Query: 681 MYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N + + ++S + + ++ +L A+E EL + Y P I EI+ L Sbjct: 798 LYRAKEEGRNGLYCYTPMLNSRGHELLALESELHKALEQQELDVYYQPQINAATGEILRL 857 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W H + G +S F+ +AEE +I I ++LE W+ + P + + Sbjct: 858 EALVRWQHSQLGLVSPQTFIGLAEENGLIMPIGQWVLETACHQCRQWQAR-GFPGLGTAV 916 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ + L + + + T + R++L +E+ M N +R LL L ++G+ + Sbjct: 917 NLSVRQFQQPHLVQQVAETLQYTGLAADRLELEITETTAMQNVNLTRTLLHELDQMGVGI 976 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 LDDFG+ S L+YL P ++K + + + + + AI++++I + + + +++A+ Sbjct: 977 ALDDFGSGYSSLNYLRQFPLHSIKIDRTFIQELPYSVQDQAIVKAVIALGRGLNLSVVAE 1036 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + +K L +GCD IQ P+ ++ +LL++ Sbjct: 1037 GVESQSQLKVLRSLGCDIIQGYFFGPPIAAAAMTQLLEQ 1075 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 4/139 (2%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + R + S D++ D + +P + +LG + G Sbjct: 140 RAEAALIQAEARWRSLIHNSSDLITILDAQGTVLYHSPVLKRLLGYHPQNCEGKSA--FG 197 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H DR + + + L E+R R D + ++ R + ++ + + Sbjct: 198 LVHPQDRKQVQQTFQQAITHTEFTLTVEYRFRHQDGSWRFLESTGRNLL-ADPAVAGIVV 256 Query: 515 IANDITEQKKSLEGILCNA 533 DIT+ K++ E L A Sbjct: 257 NTRDITDHKRT-ESALRQA 274 Score = 89.6 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 21/184 (11%), Positives = 62/184 (33%), Gaps = 4/184 (2%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV-IQHVLATGYFSQGIFSDGERQS 408 + + + + + + L+ + G V + + + E+ Sbjct: 220 FTLTVEYRFRHQDGSWRFLESTGRNLLADPAVAGIVVNTRDITDHKRTESALRQAEEKYR 279 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTI 467 + + ++ + P +A + G + + + + ++++ R Sbjct: 280 SIFENAVEGIFQSSPEGRYIRVNPALARMYGYDSPEELLAHLTDIGRQLYVD--PERRAE 337 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + +E +V D W+ R + + G +L Y G +IT++K++ Sbjct: 338 FQRLIDQQTIVTHFEAQVYRRDGSIIWITEHARAVRDGTGKLLYYEGTVENITDRKRTEL 397 Query: 528 GILC 531 +L Sbjct: 398 QLLQ 401 Score = 77.3 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 8/120 (6%) Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTI 467 + GS D W + + G +S + I H D Sbjct: 31 IVFSGSNDAQWS------MQYLSRGCLALTGYSSDELAQKGGEAFNAITHPEDLPRVLAT 84 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L + + + E+R+R + W++ + + + + G DIT K++ Sbjct: 85 LSAAIA-SSEPYEVEYRIRTKSGEEKWVLEKGHRVLDEDQCTCGIEGFITDITPLKRAEA 143 >gi|291612949|ref|YP_003523106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291583061|gb|ADE10719.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 751 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 174/727 (23%), Positives = 311/727 (42%), Gaps = 28/727 (3%) Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314 + + L + ++ F ++ W + +G I F +L + A I Sbjct: 24 FLNSVFLLAGIVAFGMGFIRW-QTSVAMGEIDFGFAGLCFVLLAYLRRHRSQADMFASIV 82 Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIP--------------AWILIFIWFIGLWMAITK 360 L + I ++ + W+ + I + + Sbjct: 83 LVLCYGLFLSIYISASYNTMRLSLFFLLAAAAFFLKGRIAGRIWLAFILLTIVIVHVLPY 142 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG----IFSDGERQSLAVLGSGD 416 L L+ + I F + + + S+ + ER A+ G+GD Sbjct: 143 FETGYSHIDIFTTCLYLLALFIIFENYETFKESQHTSEEEQALLRLTEERWRHALEGTGD 202 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 VWDW + + +LG A G + + IH +D R L F+ R Sbjct: 203 AVWDWRPETGEFHYSRRFSEMLGYAEGELGKHAEHIFNIIHPDDEPRVRDELHDFIQRRA 262 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 G E R+ A D + WM+ R + + +G +DIT K+ + A Sbjct: 263 GNYVSEMRLSARDGSWKWMLCRGKVAQRDDEHSAGLMVGTFSDITLLKQHERQLEHIAHY 322 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D LTGIPNR DRL L S + V +D+D +K +ND +G GD VL+ + Sbjct: 323 DALTGIPNRVLLADRLQQALAHSKR-EGTILAVCYLDLDGFKLVNDTMGHEAGDKVLIEV 381 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 T+RI + ++ D +ARL G+ F ++L+ + + + + + I+ PI + R V+ Sbjct: 382 TQRIKKSIRGDDTVARLGGDEFAVLLLGLHAPEECSASLNRLLEEISQPIEIKNRLFEVS 441 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCL 713 ASIG + + + +L++A+ AMY AK G N + + + R + L L Sbjct: 442 ASIGVSIYPGDDHDADTLLRHADQAMYTAKQSGKNRYYLYDTENDQRARSHHEFLRRLAL 501 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+ +E L Y P + + ++VG EALI+W HP+ G ++ +F+ E + + + Sbjct: 502 ALGRNEFELYYQPKVDMRTLQLVGAEALIRWHHPERGLLAPGDFLHAIEGTTLEVELGDW 561 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSPSRIKLSF 832 ++ + +W + P+ + INI+ + L N+ ++ + + +++ Sbjct: 562 VVATALAQLEAWHEAG--LPMELSINISVRHLQANDFAWKLKRKMLRYSHLPKGCLQVEV 619 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 E+ + + R + R RKIGIS LDDFGT S LSYLG +P D +K + S + Sbjct: 620 LETAALEDIPRVSDTIERCRKIGISFALDDFGTGYSSLSYLGRLPVDALKIDQSFIRDML 679 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + AI++ +I +AK I+A+ + E ++L MGC+Y Q +A P+ + + Sbjct: 680 KDKGDRAIVQGVIALAKVFNRKIVAEGVESEELFRDLVEMGCEYGQGYGIARPMPASELP 739 Query: 951 KLLKERF 957 L++ Sbjct: 740 AWLEKWN 746 >gi|313202102|ref|YP_004040760.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441418|gb|ADQ85524.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 751 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 162/732 (22%), Positives = 303/732 (41%), Gaps = 18/732 (2%) Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN-RWHAKVGYITFSGIACIAI 295 + + A + ++ +L+ F+ W + I + Sbjct: 20 YLWQPPLLWTYIISDLMIAVAYYSIPMALVYFVRKRPDLQFNWIFVMFSIFIFACGTTHL 79 Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL------IFI 349 L + + P A ++ ++ + + +A+ + L + Sbjct: 80 LSLWTIWNPD---YWADASMKAVTGVASLVTAIMLWRLMPQALRIPSTRQLEETVERLEH 136 Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 +A + LV + I + + Q ++++ +R + Sbjct: 137 EVEERELAERSLAAFNDTLETLVQQRTAELEEINRLLKLEIDLRREAEQTLYAEKQRAVV 196 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTIL 468 + GD V D P + G ++ G ++ + R + Sbjct: 197 TLQSIGDGVITTDKQSRVNYLNPVAERMTGWSNAEAQGKPLLEVFRIVNESSRKLVPNPV 256 Query: 469 DSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 D + + L + + + P+ + +G++L + + +D++E + Sbjct: 257 DVVLQHGEIYGLANHTALIGRHGNEYAIEDSAAPIRDQDGNVLGVVLVFHDVSEARNMAN 316 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A D LTG+PNR DRL L ++ D +M +D+D +K IND LG V Sbjct: 317 KMTYLAEHDYLTGLPNRLLLNDRLNQALTIARRDQEF-IALMFLDLDHFKNINDSLGHEV 375 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + RR+ L+ D ++R G+ F I+L N A+ A + + +P + Sbjct: 376 GDQLLKMVARRLESCLRASDTISRQGGDEFMILLPELTNYFSPAEVAEKLLAAATVPYEI 435 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705 EITV+ASIG A + + KNA+ AMYHAK G N+ + F ++ + Sbjct: 436 GAHEITVSASIGIAVFPDDGENGELLTKNADAAMYHAKSLGRNNYQFFTRAMNERVMEIA 495 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ L AVE +E L Y P I + ++VG EALI+W HP WG ++ F+ IAE+ Sbjct: 496 ELESKLRRAVERNEFVLYYQPKIDIRTGQVVGAEALIRWQHPSWGLVAPDRFIPIAEDSG 555 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I+ I L+++ R W+ I + +N+++ L + + + ++ + P Sbjct: 556 LIRPIGLWVMREACRQNQEWQAAGLAR-IPVAVNLSTVQLRQHNFLQEVSEILLMSGLEP 614 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++L +ESV + L +LR +G+ L LDDFGT S LSYL +P + VK + Sbjct: 615 DYLELEVTESVAIHAETEVINWLHKLRSMGVKLALDDFGTGYSSLSYLKRLPINNVKIDK 674 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + I+ +II M+ + +IA+ + ++ L + GCD +Q + P Sbjct: 675 SFIRDIETDPDDATIITAIIRMSHGLRLNVIAEGVENINQLEFLKKEGCDQMQGFIASRP 734 Query: 944 LGFNSILKLLKE 955 + + LL+ Sbjct: 735 VPADEFALLLQN 746 >gi|158337063|ref|YP_001518238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] gi|158307304|gb|ABW28921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 1015 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 156/558 (27%), Positives = 266/558 (47%), Gaps = 8/558 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDN 463 + IV+ + R + + T+ G A + G + I +D Sbjct: 177 LQSLIDSLPGIVFTCNSDLGWSRRSLSQGCLTLTGYAPEELLGTFNLTYNTLIDPDDLPQ 236 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + + ++ E+R+R Q W + + + + G L G DI++ K Sbjct: 237 LTAAITTAIATQQV-YTVEYRIRTKSGQLKWFLEQGNGIFDKQGQALGLEGFITDISKLK 295 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + +AF D LTG+PNR F+DRL + + V+ +D+D++K +ND L Sbjct: 296 QAETQLRHDAFYDKLTGLPNRSLFMDRLEYCIKRVKRHPDQIFAVLFLDLDRFKVVNDSL 355 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G A GD +LV + R+ ++ D LARL G+ F ++L + +++S+ Sbjct: 356 GHAAGDQLLVEIAERLTACVRESDTLARLGGDEFTVLLEGIKDLSDALLVCGRIQQSLNC 415 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702 P NL RE+ +T S G A T ++L NA+ AMY AK G E F + Sbjct: 416 PFNLNGREVLITVSTGVALSTMGYDDPEQLLHNADAAMYRAKALGKAQWEVFTADMHSNA 475 Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++ ++ DL A+E E L Y PI L IVG EAL++W HP G IS EF+ +A Sbjct: 476 SAQLQLEVDLRRAIERQEFQLHYQPIFHLETAAIVGFEALLRWHHPLRGLISPVEFIPVA 535 Query: 762 EELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISK 820 EE +I I+ ++L+ R + W+ Q P+F+ +N +SK + L ++ ++ Sbjct: 536 EETGLILPISWWVLQEACRQLSRWQTQFPLEVPLFVSVNFSSKQFSEVGLIPQIEDILHT 595 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T +P +KL +ES +M N E + L ++ +GI L +DDFGT S LSYL P D Sbjct: 596 TGLAPQSLKLEITESAIMENAEATAAKLLEIKALGIQLGIDDFGTGYSSLSYLHRFPVDI 655 Query: 881 VKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 +K + S ++ + + I+ +I +++N+ +A+ + +L M C Y Q Sbjct: 656 LKVDRSFVSAMDSHENLQIVHTITMLSQNLGMRAVAEGVETAEQAAQLRAMNCQYAQGYF 715 Query: 940 VASPLGFNSILKLLKERF 957 + P+ +S+ LL + Sbjct: 716 FSKPIDASSMEHLLAHHY 733 >gi|119490050|ref|ZP_01622674.1| hypothetical protein L8106_20760 [Lyngbya sp. PCC 8106] gi|119454202|gb|EAW35354.1| hypothetical protein L8106_20760 [Lyngbya sp. PCC 8106] Length = 923 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 156/588 (26%), Positives = 289/588 (49%), Gaps = 12/588 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + Q + Q + +R LA+ GS D +WDW++ + + +P +LG Sbjct: 335 LEQRIQQRTSSLKQLDQALKISEDRWKLALQGSNDGIWDWNVQTNEIFFSPRAKEMLGYE 394 Query: 442 SG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + W IH +DR + + + E+R+R D Q+ W++ R + Sbjct: 395 EDNETTNHLAEWEKQIHPHDRKRVLKAIWDHLDQQTEYYSTEYRIRCKDGQYKWVLHRGQ 454 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + N GD +R +G D++EQK+ + A+ D+LT +PNR F+DRL L+ Sbjct: 455 ALWNEIGDPIRMVGSQTDLSEQKQVETQLFYYAYHDSLTCLPNRAFFMDRLHLALEQVRQ 514 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ ID+D++K +ND LG GD++L+ + ++ + + D LARL G+ F I+ Sbjct: 515 YSEHLFAILFIDLDRFKLVNDGLGHLAGDELLIRVGHKLQQCISVHDTLARLGGDEFAIL 574 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT-----SSKITSSEMLK 675 L A + + P L ++ +++TASIG S S+++L+ Sbjct: 575 LDPIQGISDSIIVAERILAILQQPFILEDQTVSITASIGITFSHYYTANHSYKHSTDILR 634 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A++AMYHAKH + F + R+ ++ DL A+E+S+L + Y PI+ L Sbjct: 635 DADIAMYHAKHHSTSKYAIFDSKMQMDTLIRLRLENDLRAAIESSQLKVYYQPIVCLKTG 694 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMP 792 +I EAL++ PK G IS EF+ IAEE +I + ++L + + W+ Q Sbjct: 695 KIKSFEALVRLPDPKKGLISPGEFIPIAEETGLIIPLGEWVLRAACQQLRQWQIQGWIDV 754 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +N+A + ++ +Q ++ +T SP+ ++L +ES + + E L +LR Sbjct: 755 NVSVSVNVAGQQFSQKKIVNLVQQILQETELSPANLRLEVTESAIAEHLEWVARRLSQLR 814 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910 ++G+ + +DDFGT S L L P DT+K + S + T + + +I A ++ Sbjct: 815 QMGVQILIDDFGTGYSSLDRLQRFPIDTLKIDRSFVAKMTSQSSNSKFVEAIANFAHSLG 874 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 +++A+ I + + +GC+Y Q + + + ++ L+ +R P Sbjct: 875 FSVVAEGIETVEQQQLIQYIGCEYGQGNLFSPAVDVATMTALI-QRNP 921 >gi|77920158|ref|YP_357973.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546241|gb|ABA89803.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter carbinolicus DSM 2380] Length = 703 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 138/561 (24%), Positives = 264/561 (47%), Gaps = 8/561 (1%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + + + + + P + +LG + + G + L H D Sbjct: 139 NSEKLFRSIFQNAVTGMATCSPDGRFLKVNPALCEMLGYSENELFGV--SVLDITHPTDI 196 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + +G + YE R D + W + N +G + + ++IT Sbjct: 197 ELTERLFAEAMGGQTRSHDYEKRYIRRDGETLWAHVSTSWHYNEDGTPSYSVALISNITP 256 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 ++ + I A+ D LTG+PNRQ FL+ + L + + V +IDID++K +ND Sbjct: 257 HHQAKQKIRQLAYFDGLTGLPNRQLFLEHCNSSLTQARRN-RSPLGVCIIDIDRFKGVND 315 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD +L ++++R+ + + D+LARL + F ++ S + + + A M + Sbjct: 316 TYGYESGDALLKTVSQRLSDCMSREDVLARLGSDEFAAVIASVGSQDEFSVLAQKMLHCL 375 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 PI + E+++ + +G A + + + +LKNA AM+ AK G N+ F R Sbjct: 376 TEPIQIGEQKLYCSGGMGIALFPVDGVDAEALLKNAATAMHQAKQHGSNNFRFFSKGMNR 435 Query: 702 SDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 I+ + L A++ +L L Y P + L I+G+EAL++W+ P+ G +S F+ Sbjct: 436 MAWERIEIETGLRRALDLQQLALHYQPQVDLKTGHIIGMEALLRWESPELGRVSPMRFIP 495 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++LE R +W P + + +NI+++ + + A+I Sbjct: 496 LAEETGLILPIGNWVLESACRQAKAWHRA-GFPSLRMAVNISARQFKQAGFIDRLDAIIQ 554 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 ++ +P +++ +ES++M + + + L ++ GI L +DDFGT S+LSYL + P D Sbjct: 555 RSGINPELLEMELTESLIMEKSDETLMTLVDIKSRGIKLAIDDFGTGYSMLSYLKHFPID 614 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + AI +II MA +++ +IA+ I + L C+ Q Sbjct: 615 RIKVDRSFVRDIPENTDDAAITEAIIAMAHSLKIEVIAEGIETREQLAFLKDRACEEGQG 674 Query: 938 SHVASPLGFNSILKLLKERFP 958 + P+ + ++L +++P Sbjct: 675 YYFGRPVPVETAAEILAQQYP 695 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300076827|gb|ADJ66226.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 146/655 (22%), Positives = 286/655 (43%), Gaps = 14/655 (2%) Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL-DNDIIQ 368 + R ++ + +H L + + I +G+ ++ + Sbjct: 294 LFRHPSTTVSSFDIAGQTWHLEISVPPRSLFADHYGSLLILLVGVIASLLGAAYMRALSM 353 Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVR-- 425 + ++ +L+ ++ + R A+ S + + Sbjct: 354 RSHRIQQLVEERTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPD 413 Query: 426 -DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 P A I G +S G +L +D + F T+ + R R Sbjct: 414 YTIEYVNPAFARITGYSSTEAVGKSIRFLEGRD-SDPEGFETVWIAMREQR--EHNVVLR 470 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 D W I P+ + +G++ ++ DIT K+ + A +D LTG+ NR Sbjct: 471 NYHKDGSELWNDFYIAPVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINR 530 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 L + ++ V+ +D+D++K +ND LG GD +L ++ R+ ++ Sbjct: 531 HMLRHHLEQAIGVAERQKQALW-VVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVR 589 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D +ARL G+ F +IL ++ + ++A P+ L + +T S+G A + Sbjct: 590 EADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSVGVACYP 649 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722 + ++K+A++AMY K G N+ + + ++ +R+ I+ DL A+++ E L Sbjct: 650 NDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLL 709 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P + L ++G EALI+W HP+ G +S + F+ +AEE +I I ++L Sbjct: 710 HYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACTQC 769 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W+ I + +N++ L +L + ++ T P ++L +ES++M + E Sbjct: 770 RQWQ-LGGYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVE 828 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900 + +L L+K+G+ L++DDFGT S L+YL P D +K + S + AI Sbjct: 829 HAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITA 888 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 SII +A++++ +IA+ + + + L GCD IQ + P+ + ++L++ Sbjct: 889 SIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQILRQ 943 >gi|119491300|ref|ZP_01623354.1| hypothetical protein L8106_21924 [Lyngbya sp. PCC 8106] gi|119453464|gb|EAW34626.1| hypothetical protein L8106_21924 [Lyngbya sp. PCC 8106] Length = 1266 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 152/576 (26%), Positives = 278/576 (48%), Gaps = 8/576 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +I + + ER L D+V + + +P +LG Sbjct: 687 GLILDISDRKRAEMALRESEERYRLLAENMSDLVCIHNAEGQYLYVSPSCQLLLGYDDKE 746 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G + + H DR + +R+R + W+ P+ N Sbjct: 747 LIG--EDPYTFFHPEDRSRILQT-SHLAALSGDPIPMTYRMRKKSGDYIWLETLTTPILN 803 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G ++R + D+T++ + + + +A D+LTG+PNR + R+ L + Sbjct: 804 IRGQVVRLQTTSRDVTDRVQVEQQLRHDALHDSLTGLPNRDLLISRIELALQRLKRYQDF 863 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + ++ +D+D++K IND LG VGD++L+S+ + + L++ D++AR G+ F I+L Sbjct: 864 QFAILFLDLDRFKVINDSLGHLVGDELLISVAQTLQGLIRPVDLVARFGGDEFVILLEEI 923 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 +N + A M + P L ++E+ +T SIG +S + ++L++A+ AMY A Sbjct: 924 DNINEAILIAKRMITKLQSPFILNQQEVFITPSIGIVYGSSDYHQAIDLLRDADTAMYRA 983 Query: 685 KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +GG E F S R+ ++ DL A++ E L Y PII + +I G+EALI Sbjct: 984 KAKGGERYEIFDPSMYLQALKRLHLENDLRQALDREEFILYYQPIISIETGKITGMEALI 1043 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIA 801 +W HP+ G I SEF+ +AEE +I + +++L+ + +W + I +N++ Sbjct: 1044 RWQHPQNGLIPPSEFIPVAEETGLIVPMGMWVLKTACSQMKTWHQHFPNTQNLKISVNLS 1103 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ L + L E + +++ + P + L +ES+++ + E LL +R I L+LD Sbjct: 1104 ARQLREPTLIEQINQALTEIDFPPQLLTLELTESMLLDDIENIMTLLSNIRSHSIQLSLD 1163 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL +P +T+K + S + E + AI+ I+ +A + +IA+ I Sbjct: 1164 DFGTGYSSLSYLQRLPLNTLKIDQSFVNCIGEQGENSAIIDIIMTLATKLNLEVIAEGIE 1223 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L +GC + Q +A PL ++ L ++ Sbjct: 1224 TRTQFEYLKNIGCPFAQGYLIAKPLTVEALTALFQD 1259 Score = 68.4 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 13/146 (8%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLP 454 + +R +++ + + D +P T+ + S + ++ Sbjct: 570 ALKQAEKRLQNLAANLPGVIYRYVLSADDSDAVTYMSPGSRTLWEIESSEIEQDVKVLWE 629 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 IH D + L YE+R+ W+ +P NGD++ + G Sbjct: 630 LIHPEDLSRMQESL-QVSAETLEPWTYEWRITTPSGDQKWLQTLAKPEKQPNGDVI-WEG 687 Query: 515 IANDITEQKKS-------LEGILCNA 533 + DI+++K++ E A Sbjct: 688 LILDISDRKRAEMALRESEERYRLLA 713 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 46/139 (33%), Gaps = 6/139 (4%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLP 454 + R ++ + + D + +P + + + + Sbjct: 446 ALKQAETRFQNLAANIPGAIFRYILHSDGSDSVIYMSPGCYKLWEIEAREVEHNTEILWK 505 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H +D + + YE+R+ ++ +P +NGD++ + Sbjct: 506 LVHPDDLPGMQQSV-LLSAQTLEPWSYEWRIIMPSGIHKYVQSAGKPEQQTNGDVI-WDT 563 Query: 515 IANDITEQKKSLEGILCNA 533 + ++T K++ + + A Sbjct: 564 MIIEVTALKQAEKRLQNLA 582 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 8/151 (5%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT----TTPDIATILGLAS 442 + + + + + + ++ D++ + P + G+++ Sbjct: 312 FREITERKQSQIALKENEQFLQTIYDNTQYGIFIIDVLENGTFEYVELNPIHEQLTGIST 371 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + V EF Q W + + P+ Sbjct: 372 AEIQGKTPA--QILPPEIAQAVEQNYRRCVETETIITYEEF--LPFRGQDLWWLTSLAPL 427 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 N G I++ IG A +IT K++ A Sbjct: 428 KNDTGRIVQIIGTATNITALKQAETRFQNLA 458 Score = 45.7 bits (107), Expect = 0.042, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 3/132 (2%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + E V S + ++ + + G +W + Sbjct: 76 QTTEELYRQTVENSPNPIFSVNKQGKIKIWNVACQQNYHY-HQEIIGQ--SWKILLADES 132 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 +IL ++ E R AD H+ I R+ P+ +S+ + + + IT Sbjct: 133 LSPLESILTQVFQEQKSFSGVEITYRGADQTKHFAISRLYPLFDSHQQVSQCVIANTHIT 192 Query: 521 EQKKSLEGILCN 532 E+K++ Sbjct: 193 ERKQAELERDKL 204 >gi|16331282|ref|NP_442010.1| hypothetical protein slr0359 [Synechocystis sp. PCC 6803] gi|1001455|dbj|BAA10080.1| slr0359 [Synechocystis sp. PCC 6803] Length = 1244 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 164/582 (28%), Positives = 279/582 (47%), Gaps = 8/582 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLA 441 ++ + Q + + +R + D+VW D V + P A + G + Sbjct: 646 ELAMLTDITKRKSAEQALSASEQRLEGILGSIQDVVWSADAVSFATLYLNPTTAMVYGQS 705 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + W +H DR L + + + + E+R+ + W+ R + Sbjct: 706 LEVCYQSQNFWFEQVHPGDRLLLEYHLQLLME--KDQTELEYRIVQPGGKERWLFRRSQL 763 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + LR I +DITE+K + E + NA D+LT +PNR FLDRL L + Sbjct: 764 VRDGEHQPLRIDSIDSDITERKLAAEKLHYNANHDSLTNLPNRSMFLDRLGHALQRNLRR 823 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 +LR V+ +D+D +K IND LG + GD +L + R+ + L+ D LARL G+ F +++ Sbjct: 824 RDLRFAVLFLDLDGFKIINDSLGHSCGDLLLQGIAHRLRQCLRPEDTLARLGGDEFTMLI 883 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + + + P NL +EI SIG A ++L++A+ AM Sbjct: 884 ENITCPEDVIAVAQRIHQELQKPFNLNGQEIFTNTSIGIALNHPHYGHPQDVLRDADTAM 943 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G F + + + DL A++ EL L Y PI+ L ++ G+E Sbjct: 944 YRAKAAGKGRYAIFNQTMHHHAVQRLQRENDLRRAIDRQELQLHYQPIVCLKTGQLQGVE 1003 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILI 798 AL++W HP+ G I EF+ IAEE +I + ++L +R I+ + + + I Sbjct: 1004 ALVRWQHPEEGLILPEEFVAIAEETGLIVPMGDWILWEASRQILELKQSFPQLSHLQVSI 1063 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++S+ L D L + + ++S T +P +KL +ES+++ N + +L LR+ I + Sbjct: 1064 NVSSRQLRDQRLLKTVDEILSSTNLAPQDLKLEITESLLIDNLNLAADVLKSLRQRNIQI 1123 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916 +LDDFGT S LSYL P +T+K + S + AI+ +I+ +A + +IA+ Sbjct: 1124 SLDDFGTGYSSLSYLHRFPINTIKVDRSFVNTMEPNNQNTAIVHTIVTLAHTLGLDVIAE 1183 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I E + +L +GCD Q + A P+ +L L + P Sbjct: 1184 GIETERHLTQLHWLGCDAGQGYYFARPIPSEDLLDFLTIQIP 1225 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 63/185 (34%), Gaps = 5/185 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 F+ + +T + ++ V + ++ + + ++ Sbjct: 477 FVADQATEITLTPLDGSMVVAEMRVSPIHWQKGKAFLVSLRDITEQHQARLALAESEKKY 536 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIH--INDRDNF 464 V + + +W D + +A +LG + + I ++ IH +++ Sbjct: 537 RYIVELTSEGIWILDQDQQTTFANQQLADMLGYSVQEILEKNITAFVLVIHHLPESQNSH 596 Query: 465 RTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + L SF Y+ + + D W ++ + G+ + + DIT++ Sbjct: 597 QKTLQSFPRCVLPNHGQVYDVQFQRRDGSVLWGLVSRSAWYDQWGNYRGELAMLTDITKR 656 Query: 523 KKSLE 527 K + + Sbjct: 657 KSAEQ 661 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 7/150 (4%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGLAS 442 V H+LA Q A+ S + + D V TI G Sbjct: 277 VASHILAAAIDRQEYEERLLLLQQAIDASSNGILITDALGSDNAVVYANQGFETITGFNR 336 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIR 500 + G +L ++ + + L+ + E ++ D W + + Sbjct: 337 EEVIGQNCRFL--LNEDRQGEQNKQLEKLRTAIAHGQECEVVLKNYRKDGASFWNHLYLS 394 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGIL 530 P+ N ++ +IGI D+T+QK + + + Sbjct: 395 PIYNQQNFLVNFIGIQTDVTQQKLAEQQLR 424 Score = 46.5 bits (109), Expect = 0.023, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 35/143 (24%), Gaps = 23/143 (16%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + V Q + + E S ++ D + D P + G Sbjct: 407 IGIQTDVTQQKLAEQQLRASEEFFSSMIVTITDGLLIVDQEGIIQFVNPAAREMFKRQEG 466 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + E + D +R+ P+ Sbjct: 467 ELLQQPFG----------------IPFVADQAT-----EITLTPLDGSMVVAEMRVSPIH 505 Query: 504 NSNGDILRYIGIANDITEQKKSL 526 G ++ DITEQ ++ Sbjct: 506 WQKGKA--FLVSLRDITEQHQAR 526 >gi|39997114|ref|NP_953065.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|39984004|gb|AAR35392.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|298506127|gb|ADI84850.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 799 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 162/752 (21%), Positives = 325/752 (43%), Gaps = 27/752 (3%) Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285 W++L + I + L + + + ++ + + L + ++ ++ Sbjct: 49 WLLLTLVGIYCLVAGSTYYVSRIGLFLSPSQVMFLVVTASTVIAYNLL-LHLFYQRIICC 107 Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345 +L + + + A + L T + +R V + A+ Sbjct: 108 FRFINVFQIVLDLLLVTVLVHLSGGASSWFWPVYLIVTIEAAFLIEG--KREVWFVGAFG 165 Query: 346 LIFIWFIGLWMAITKRLDND---IIQPALVGGLVLIVILIGFTVIQHVLATG-------- 394 I + + + N ++P L I+++ + + + A Sbjct: 166 GILYGALL-ALEHFGFIPNVPMPFVEPGLHQDPHYILLVWLWVSLLNAAAAVIGSYFVSV 224 Query: 395 --YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 S+ ER + + D++ + +LG + ++ Sbjct: 225 IERESEATRQSEERLMGFLDTANDLILSFSPEGRLRYVNEAWQQVLGYTAEE--AKELSF 282 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 IH + R+ L+ + E + A + + + + G Sbjct: 283 FGIIHPDSRERCNAELERILAGDVLS-PLEATLVAKGGRSIIVEGSLTCGVDGEGS-TAV 340 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 GI DITE+K+ E + A D LTG+PNR FLDRL + + +M +D Sbjct: 341 WGICRDITERKQVEEQLYRLAHHDTLTGLPNRILFLDRLQQAKAHANRYRH-HVALMFLD 399 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K IND LG VGD +L + +R+ + ++ D +AR+ G+ F ++L++ ++ + Sbjct: 400 LDRFKIINDTLGHPVGDKLLQEVAKRLVDCVREVDTVARIGGDEFTVVLVNIDSVEDVKR 459 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + KS+++P + E+ +T SIG A + ++K A++AMYHAK G N Sbjct: 460 VAQKILKSLSVPFMVDSFELYITTSIGIALYPGDDENPDNLVKKADIAMYHAKGEGRNTF 519 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + + R++++ L A++N E + Y P + + ++I +EAL++W HP G Sbjct: 520 KFYVPKMDANADKRLLLETSLRKALDNEEFRVYYQPKVDITTKQITAMEALLRWQHPTLG 579 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 ++ SEF+ +AEE +I I ++L W + PP+ + +N++ L Sbjct: 580 LVAPSEFIPLAEETGLIVPIGEWVLRAACLQNRKWLEMGL-PPMKVAVNLSGYQFQQPNL 638 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ +++ T P ++L +ESV+M NP+ + +L +R +GI +++DDFGT S L Sbjct: 639 LDIIRTVLADTGLDPGLLELEITESVIMQNPDFAVAVLAEIRDLGIHISIDDFGTGYSSL 698 Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 ++L +T+K + S + AI +II M ++ +IA+ + E + L+ Sbjct: 699 AHLKRFSINTLKIDKSFVRDVEINSADAAIATAIIAMGNSLNLKVIAEGVETEGQLTFLS 758 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 CD +Q ++P+ + L+ R LV Sbjct: 759 ENKCDEVQGFLFSTPMPSEDVADFLRGRTTLV 790 >gi|237746066|ref|ZP_04576546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] gi|229377417|gb|EEO27508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] Length = 1049 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 158/610 (25%), Positives = 276/610 (45%), Gaps = 15/610 (2%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410 + R N I ++ ++ ++ F+ F E+ L Sbjct: 440 SAILPLHRNGNVIGVMFFYSNVLNAFTESSQRLLLELVEDIDFALEHFEKEEQLQLSAQI 499 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILD 469 S + + D V I G + G + H DR NF + Sbjct: 500 FAQSSEGIMLLDPNCHIVMVNSAFTHITGYSEEETLGRNPKMLASGQH--DR-NFYATMW 556 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + GR Q E R D + + I+ M +S G + YIG D+TE+K++ E + Sbjct: 557 EAIETE-GRWQGEVWNRRKDGSLYPEWLLIQTMRDSRGTLTHYIGTFTDLTERKETEERV 615 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+PNR R + L+ + +M +D+D +K +ND LG VGD Sbjct: 616 QWLAHFDPLTGLPNRTLLHIRSNLAISLAQRR-HEPLALMFLDLDNFKNVNDSLGHGVGD 674 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 ++L ++R+ ++ D ++RL G+ F ++L ++ A A + A N+ Sbjct: 675 ELLKQFSQRLVNAVREQDTISRLGGDEFVLVLPG-TDTDGAAYLAERLLNIAARQYNIER 733 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMI 707 EI +T SIG A + + + ++A+ AMY AK G N F + I Sbjct: 734 HEINLTVSIGIAMYPTDGTDFDTLWRSADAAMYRAKQSGRNDYCFFTTEMQARSARTLQI 793 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 L A+E ++ LVY P + L IVG EALI+W HP++GN EF+ IAE I Sbjct: 794 DNALRRALERNQFSLVYQPQLSLNTNRIVGFEALIRWTHPQFGNTPPDEFIPIAESNGQI 853 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I ++L+ R + W+D + + I +N+++ L E + A++ + SP Sbjct: 854 IPIGEWVLKTAVRQLRLWQD-NGLKDVTISVNLSAVQFRHPRLPELVMAILEEAGVSPEC 912 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +E V M NP + ++ LRK GI +++DDFGT S L+YL ++K + S Sbjct: 913 LQLELTEGVAMENPLAAITVIDELRKKGIRISIDDFGTGYSSLTYLKRFNVYSLKIDRSF 972 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + + +AI+ ++I +A ++ +A+ + + ++ L GC IQ +++ PL Sbjct: 973 VQDLPNDTEDMAIVSAVISLADSLGMITVAEGVETKEQLEFLRSRGCTEIQGYYLSRPLQ 1032 Query: 946 FNSILKLLKE 955 +++ +++ Sbjct: 1033 ADAVFSFIED 1042 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 7/108 (6%) Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQYEFRV 485 + + I G + W D ++S + E Sbjct: 12 IHFNDKLCEIFGYTPEEFG--KKGWNELC---DTPCAEENRGIESLKRGDIDEFREEKAF 66 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 R + + + R ++ +G + DITE+KK+ I + Sbjct: 67 RRKNGRNAIAEVHFRCVAKDDGAPDYLVVTVEDITERKKAQTEIYRLS 114 >gi|237807132|ref|YP_002891572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Tolumonas auensis DSM 9187] gi|237499393|gb|ACQ91986.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Tolumonas auensis DSM 9187] Length = 1098 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 147/567 (25%), Positives = 279/567 (49%), Gaps = 12/567 (2%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDR 461 + ++ + + + D R+ + + + G + G R + H D Sbjct: 526 QLRQAAIVFESTREGIVITDAERNIIKVNRALIDLFGYPENELLGQRPRIFHSGKH--DG 583 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 ++ +L + + G + E R + + M+ I P+ +SNG+IL YI I DI++ Sbjct: 584 HFYQQMLQALDEH--GFWRGEMWNRRQNGELLPMMTSINPVCDSNGEILYYISIYTDISQ 641 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 K S + A D LTG+PNR +L + L + + + R ++++D+D +K +ND Sbjct: 642 LKDSEARLEHMALHDPLTGLPNRAMLGQKLDSALQHAMLN-STRVALLMLDLDHFKNVND 700 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD++L ++ R+ + L+ D++ RL G+ F ++L + + ++ A + ++ Sbjct: 701 SFGHHFGDELLHQVSARLKQQLRESDVVCRLGGDEFTVLLQNNPSPDDVSLLAERIIHAL 760 Query: 642 AMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699 P L RE+ + SIG + + T+ E+++ A+ AMY AKH G + F Sbjct: 761 HQPFLLSNAREVMIGTSIGISLYPEHGSTAEELMQQADTAMYRAKHDGRDGYRYFSEELF 820 Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ +++ L A+ E + Y P I + +I+G EAL++WD P++G I SEF+ Sbjct: 821 LKAKARLELEQRLHRAITGQEFKVFYQPQISIKTNQIIGAEALLRWDDPEYGLIPPSEFI 880 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I+ I ++L R W DQ ++PPI + +N++ L ++ + + ++ Sbjct: 881 SVAEETGLIQNIGEWVLYETCRQGRDWLDQ-HLPPINLAVNLSPLQLHHGDVRQLIGTIL 939 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + + ++L +ES +M E + +L LR+ GI + +DDFGT S L+YL P Sbjct: 940 HNSGFPAHHLELELTESALMEQQEETVKILQGLRQQGIRIAIDDFGTGYSSLAYLKQFPL 999 Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + + + I +I+ M ++ T++A+ + + ++ L + GCDY Q Sbjct: 1000 DVLKIDKRFVEDIPHERDDMEIAATIVAMGHSLRLTVLAEGVETKAQLEFLEQQGCDYYQ 1059 Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963 + PL +LL ++ P V Sbjct: 1060 GYLYSMPLPAEEFAQLLSQQNPPVTQA 1086 Score = 89.6 bits (221), Expect = 3e-15, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 10/207 (4%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 G++ A + I + L+ + D P + L +V+ + + + Sbjct: 333 ATRAGFQSAGYFVIREKGQVIGALNLYA-----DEPDFFSPEVRATLNDMVMDVTYALDM 387 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--DRVTTTPDIATILGLASGSMH 446 + A + + + + S I++ W + ++ G + Sbjct: 388 LLQAKERAN--ALIALQNAAEVIDASPTILFRWQPNSSWKMEYVSSNVQR-WGYQADDFI 444 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 +H D + + R E RVR A ++ W+ + + Sbjct: 445 NGKLTMSDLLHPEDLQRVWAEVIHHIETRHKEYILECRVRTAAGEYLWVENHVTTSFDRK 504 Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533 G R+ G+ DIT+QK + + A Sbjct: 505 GKPQRFTGVMTDITQQKNNELQLRQAA 531 Score = 70.0 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 42/355 (11%), Positives = 99/355 (27%), Gaps = 32/355 (9%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDI---IQPALVGGLVLIVILIGFTVIQHVLATGYF 396 L AW + + + + + + + + QH + Sbjct: 23 LSVAWFYFSGYSLSPSATKGAPPFDSLTFWVSLTTFITGITVGVFFLLVWRQHYMQHRQA 82 Query: 397 SQGIFSDGERQS---LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 ++ +R + G + + + ++T+ L+ + Sbjct: 83 LSRRVAEKDRLLHHFFDLPLLGMAI-TTNANGSWLRFNDHLSTLFNLSRDELAELNLL-- 139 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 H +DR R + E R D + ++ R + + +G I I Sbjct: 140 ALTHPDDRPYDRQEWMRMQDGESQGYRREKRFVRPDGSMLFALVDTRCIRHPDGSIDCMI 199 Query: 514 GIANDITEQKKSLEGILCNAF-QDNLTGIPNRQSFLDR-----LTTILDLSATDDNLRPT 567 + DI+ +K S ++ D L+ + N+ + L I ++ + Sbjct: 200 NVIEDISARKNSELRLIRQNNLYDMLS-LTNQAIVRSQDRLVLLQNICRIAVRNGGFVFA 258 Query: 568 -VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V + + + G G + ++ RLS +L+ + Sbjct: 259 WVSATEQEHSSHV-ASYGHDNG----------FLQFIRDYQQQHRLSAGSHAPVLMP-TD 306 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTA---SIGFASWTSSKITSSEMLKNAE 678 A+ + + + E A S G+ + A+ Sbjct: 307 RAIAAESHVILNHFLTDESVQPFHEAATRAGFQSAGYFVIREKGQVIGALNLYAD 361 >gi|322421927|ref|YP_004201150.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320128314|gb|ADW15874.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M18] Length = 715 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 164/617 (26%), Positives = 285/617 (46%), Gaps = 23/617 (3%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHV----LATGYFSQGIFSDGERQSLAVLGSGDIV 418 + I + G I I + +++H L + + + R + A + Sbjct: 94 THAIEKAYHAGATDFITKPIHWAILRHRVRYMLRSSKAMRDLRVSEARLNNAHRIAHMGS 153 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W+WDI+ D+ + +I TI + S +L IH D++ F + ++ Sbjct: 154 WEWDILNDKFYWSQEICTIFAVDSVGFDSCYPAFLNCIHPLDKELFNKSFEDACASKK-P 212 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + + + Q + + G ++R G DITE+K+ + + A+ DN+ Sbjct: 213 ISIDHNILLPGGQERFCHTEGEVSVDEFGRVMRISGTIQDITERKRIEDQVRSLAYYDNI 272 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+PNR F + L L + + V+ +D+D++K+IND LG A GD++L + R Sbjct: 273 TGLPNRVLFGELLDRALTFARRYHR-KVAVLFLDLDRFKEINDTLGHAPGDELLKEVAER 331 Query: 599 IGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 + ++ D +ARL G+ F II+ N+ + + K +A P Sbjct: 332 LKHSIRGYDSLWQGGGVEESTPVARLGGDEFTIIMEDIQNTKGVIASTQRILKLLAEPFL 391 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 L + E+ VTASIG + + + ++KNA+ AMYHAK G N+ + F + +R Sbjct: 392 LGDVEVCVTASIGISIYPDDGEDAMTLVKNADTAMYHAKREGRNNAQFFMQALNDAACER 451 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++++ L A+ N E L Y P + IVGLEALI+W P+ G + F+ AEE Sbjct: 452 LLLERQLRKALANEEFILYYQPQVDATSGRIVGLEALIRWQSPELGFVPPVNFIPFAEES 511 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I I+ ++++ R I +W + PP + +N++ L L E + + Sbjct: 512 GQIMLIDEWVVQAACRQIGAWIARGITPP-RVAVNLSGCHFLKRNLVEMVSDCLRNFGIP 570 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P +++ +E V+M + E++ L L+ +G+S+++DDFGT S LSYL P DT+K + Sbjct: 571 PRYLEVELTEGVIMRDVEQATASLAELKAMGVSVSIDDFGTGYSSLSYLKRFPIDTLKID 630 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S +T AI +II MA ++ IIA+ + + L C +Q Sbjct: 631 RSFITEVTKDADSAAITTAIISMATSMRLDIIAEGVETMDQMGFLLTHSCAVMQGYLFCR 690 Query: 943 PLGFNSILKLLKERFPL 959 PL + + L E P+ Sbjct: 691 PLPPEEVARFLTEGLPM 707 >gi|83646741|ref|YP_435176.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83634784|gb|ABC30751.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 637 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 147/637 (23%), Positives = 291/637 (45%), Gaps = 17/637 (2%) Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKR-----LDNDIIQPALVGGLVLIVILIGFT 385 M+ + ++P +L+ + +A L I+ + + + LI Sbjct: 1 MRKHGEFWDVLPISLLMLGSVATIHLASLYYFEGESLSWPILTTLSIAVIFAFLSLIQIR 60 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + A ++ S AV SG + D + + G Sbjct: 61 LNRQLAAKVKALHERDFKLKKLSSAVTNSGCSIIITDRLGRIEFVNNKFVNVTGYGQEEA 120 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMS 503 G +L ++ D D + + E R D W + + + Sbjct: 121 RGR---FLDILNPKDMD-AEKPQEQIWESDILYDGWEGEVLSRRRDGYDFWWAVTVSTVC 176 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +S+ + Y+ D++E K++ + A D+LTG+ NR+ F+DRL + ++ D Sbjct: 177 DSDNTVTNYVISGVDVSELKEANRKMQQMALYDSLTGLANRRLFVDRLEQAVKAASRDRK 236 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ +D+D++K+IND LG GD +L ++ +R+ ++ D +ARL G+ F ++L Sbjct: 237 -QIALLFLDLDQFKRINDTLGHDAGDSLLQTVAQRLKNCVRAKDTVARLGGDEFTVLLTD 295 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + A + K++ PI L + E+ V+ SIG + + ++KNA+LA+Y Sbjct: 296 IVDTFSVTPVATQILKALKEPIKLKKHEVIVSTSIGVTLAPTDGANADVLMKNADLALYR 355 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + + +++++++L A++ E L + P + L +IV +EAL Sbjct: 356 AKEHGRDRYHFYTEELNAHALKQLLMEQELRHALQFEEFTLGFQPQVNLTTGKIVSVEAL 415 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP G + F+ +AEE +I I ++L+ + +D I I +N++ Sbjct: 416 IRWHHPSKGLVMPDSFISVAEETGLINPIGRWVLKNACMQMKMLQDLTG-SAIKIAVNLS 474 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ D +L + ++ +++T P ++L +ES++MG+ + L RLR+ G+SL +D Sbjct: 475 ARQFDDPKLEQSIEEALNETGLEPEWLELEVTESMLMGDIQAVTNKLKRLRQTGVSLAID 534 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFG+ S LSYL +P + +K + + + I +II +A ++ ++A+ + Sbjct: 535 DFGSGYSSLSYLKKLPVNALKVDREFVRDIPEDSNDMEITSAIIAVAHKLQLKVVAEGVE 594 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L CD+ Q + PL F + L E Sbjct: 595 TAEQKEYLLANQCDFAQGYFFSKPLSFEDLYIYLNEH 631 >gi|119944868|ref|YP_942548.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] gi|119863472|gb|ABM02949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] Length = 954 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 153/584 (26%), Positives = 286/584 (48%), Gaps = 8/584 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LAS 442 T + ++ A + + ER +L + + +WDW+I ++ + +P +LG + Sbjct: 366 TSLDNLEARELYENALRESEERYALVANATNEGLWDWNITKNEMYFSPRFFALLGKNVDE 425 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 S I +W IH D ++ ++ + + Q E+R+ D ++ W++ R + Sbjct: 426 NSSLNTIEDWYKLIHPKDIILVKSAINDCLNGKTAHFQCEYRLLHHDGRYRWILSRGLAI 485 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +S+G+ +R +DI++Q+ + + + +AF D+LTG+ NR F+ L +L + + Sbjct: 486 WDSSGEAIRMAASHSDISDQRDAKDKLRYDAFHDSLTGLYNRSWFVSYLQELLSGHSRNK 545 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 NL V+ +D+D++K +ND LG A GD +L+ + R+ + L+ D+LAR G+ F I+L Sbjct: 546 NLNFAVLFLDLDQFKLVNDTLGHAAGDKLLIYVAERLKKCLRETDMLARFGGDEFVILLK 605 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 S+ N + A + + +++ ++ I ASIG + + EML++A++AMY Sbjct: 606 SDENY-RFIQIAERIIEQLSLSFSINNNYIHTGASIGITLLETGYQDAYEMLRDADIAMY 664 Query: 683 HAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N F + ++ L A+EN EL L Y PII L D + G EA Sbjct: 665 RAKLNGKNCHIVFDEEMRSQLLKQVDTEKLLRQAIENDELTLYYQPIISLSDGRLTGFEA 724 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILIN 799 L++W++P GN+S F+ +AE I + ++ E + +W+++ + + IN Sbjct: 725 LLRWNNPILGNVSPDVFIPLAEANGTIIQLGQWVFESAFIQLKAWKEEFTGFDNLVLSIN 784 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ LD + L+ S I + +E+ ++ + ++ +K GI + Sbjct: 785 MSPVQFLDKLFLKNFPKLMDTYNIKGSEIAIEITETAIIHKKALAIKVINDFKKYGIHIH 844 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S +S+L D +K + S + G K ++++II A N+ A+ Sbjct: 845 LDDFGTGYSSISHLVGFQIDLIKIDRSFIELLGVNSKEDKLVQAIINFAHNLGIKCTAEG 904 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 I + L+ CDY Q +A P + + + ++E K Sbjct: 905 IEEAAQQRLLSIANCDYAQGYFIAKPAPASQLTEFIREHLSRSK 948 >gi|71906314|ref|YP_283901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71845935|gb|AAZ45431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 925 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 152/561 (27%), Positives = 271/561 (48%), Gaps = 11/561 (1%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRD 462 + ++ S + + D + T P + G + G R + Sbjct: 347 LQLMAMVFSNSNEAIIVTDASNRIIATNPAFTCLTGYQPDDVIGKNPRILSAGTTPTE-- 404 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + + + +R G Q E R + + + + I + + +G I +IG DI+E Sbjct: 405 -VFSDMWTCL-HREGAWQGELWDRKKNGEAYPKWLSISLVRDEDGQIRNHIGSFIDISEL 462 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K + E I A D LT + NR S ++L L + ++ +M+ID+D++K IND Sbjct: 463 KATQERIRHLAHHDTLTNLANRFSLHEKLAQALAFCKRN-RMQLALMLIDLDRFKTINDT 521 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG GD++LV + +R+ ++ DI+ARL G+ F I L + A A + + I+ Sbjct: 522 LGHQAGDELLVQVAKRLSHAVRESDIVARLGGDEFVIALPGIGSPADAAHLADDITREIS 581 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P + +E+ + SIG + ++LKNA++AMYHAK G + + F + Sbjct: 582 APYLIKGQELRTSPSIGICVYPGDGSEIGDLLKNADVAMYHAKANGRGNYQFFTEDMNIA 641 Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 ++ DL LA+ E L Y P + L IVG+EALI+W HP G +S ++F+ I Sbjct: 642 TTERMCLESDLRLAITRREFLLHYQPQLDLRSGTIVGVEALIRWQHPTRGLVSPADFIPI 701 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE MI AI ++LE R + W+++ + + + IN+++ LD L + L++ Sbjct: 702 AEESGMIAAIGDWVLEEACRQLKVWQNR-GITHLRMSINLSAGQFLDKTLPARIHELLAA 760 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 S R+ L +ES+ M +P+ S ++ L G++L++DDFGT S L+YL +P T Sbjct: 761 NDLSADRLDLEVTESMSMASPDESISVMKTLSSSGLTLSIDDFGTGYSSLAYLKLLPIHT 820 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + I + +A + ++A+ + E +K L +GC+ +Q Sbjct: 821 LKIDRSFVKDIESDPNDADICDVTVLLAHKLGLEVVAEGVETEAQLKFLLSIGCEKVQGY 880 Query: 939 HVASPLGFNSILKLLKERFPL 959 ++ PL + + ++ P+ Sbjct: 881 LISKPLPADQAERFIRNNPPM 901 Score = 83.8 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 7/151 (4%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445 I+ + + + + +R + + ++ + P +A + G + ++ Sbjct: 206 IEDISVRRTTLEALEAAEQRYRNIFEHASEGIFQSTRDGHYLAANPALAKLYGYDNAQAL 265 Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + ++ N R+ F + + L +E V D W+ + Sbjct: 266 MTDLADIERRLYVQPNRREEFL----TLIEKNGAILNFESEVYRRDGSRIWISENAHVVF 321 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534 G+ + Y G DI+E+K++ + A Sbjct: 322 GPQGEFICYEGTVQDISERKRTEAHLQLMAM 352 Score = 73.8 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 3/107 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D V + + G AS + G +W H DR R ++ + R Sbjct: 113 DADWTMVFVSDGCQELSGYASSEILGKTGVSWEEITHPQDRGRVRACIEDAI-GSGQRFA 171 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++R+ Q W+I R + + + + G DI+ ++ +LE Sbjct: 172 VQYRIVCKSGQVKWVIERGVAIRDELDESV-IEGFIEDISVRRTTLE 217 >gi|77165089|ref|YP_343614.1| multisensor diguanylate cyclase/phophodiesterase [Nitrosococcus oceani ATCC 19707] gi|254433953|ref|ZP_05047461.1| PAS fold family [Nitrosococcus oceani AFC27] gi|76883403|gb|ABA58084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nitrosococcus oceani ATCC 19707] gi|207090286|gb|EDZ67557.1| PAS fold family [Nitrosococcus oceani AFC27] Length = 944 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 155/576 (26%), Positives = 272/576 (47%), Gaps = 16/576 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 +L + Q + R L + + V D V I G+A + Sbjct: 371 ILDAYHNDQRRKNAESRLRLTAKVFESTVEGVIITDTKAYVVDVNEAFTHITGIARSEIM 430 Query: 447 GPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G + L R + S G+ Q E + + + + + + + N Sbjct: 431 GRHLSTLQTKQEKPISFQRVRHAIKS-----TGQWQGELWSQRKNGEIYPLWVTANAVRN 485 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 S +I ++ I +DIT +K++ + + A D LTG+PNR FLDRL + + + Sbjct: 486 SKEEITHFVAIFSDITLRKQTEQRLYYLAHHDALTGLPNRSLFLDRLEHAIHHAQRHHH- 544 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R V+ ID+D++K IND LG +GD +L + R+ ++ D +ARL G+ F +I+ + Sbjct: 545 RIAVLFIDLDRFKFINDTLGHPIGDILLKQVAERMRLNIRAEDTIARLGGDEFTVIIENF 604 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ I+ + + P N+ E+ V+ASIG + + +S +L+ A+ AMY A Sbjct: 605 TDTSAISLITQKIISACEKPFNIKGNELFVSASIGVSLYPEDGHEASMLLQRADAAMYQA 664 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG + + F ++++ +K L A+ E L Y PII + IV +EALI Sbjct: 665 KKRGKSCCQFFTTEINTAATEQLALKNLLRRALARKEFQLYYQPIINMESGAIVSVEALI 724 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W P+ G IS + F+ +AEE +I + ++L+ W P+ I IN+++ Sbjct: 725 RWVDPELGLISPNTFIPLAEENGLILPLGEWVLQTACTQAKIWNQSNPY-PVRIAINLSA 783 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L + E + ++ KT + ++L +ES+++ E S L L+K+G L+LDD Sbjct: 784 RQLEQTDFSERVSEILKKTPFPTDHLELELTESMLINRMESSLKTLNTLKKMGCRLSLDD 843 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL P DTVK + S + G AI ++ MA +++ +IAK + Sbjct: 844 FGTGYSPLAYLKRFPIDTVKIDRSFVQGISIDPDDAAITTAVTTMAHSLKRAVIAKGVET 903 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L + D Q ++ P+ + + L+E+ Sbjct: 904 REQLNFLNEIKVDEAQGYFISYPVPAEELTQKLREK 939 >gi|237654383|ref|YP_002890697.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|237625630|gb|ACR02320.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 748 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 153/575 (26%), Positives = 266/575 (46%), Gaps = 14/575 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 A SQ + V S D+++ D P I +LG ++ Sbjct: 160 RANKLMSQRLKDSERLHRYLVESSPDMIFTLDGSGRFTYINPRIKALLGYDRSALVKRP- 218 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-----DNQFHWMIIRIRPMS-- 503 + + D D T+L E R+R+ + + + PM Sbjct: 219 -FTTLVMPEDLDRIDTLLSQPSSLPGESFHVELRLRSRRDGGGEGGSVTVSLTGIPMVTQ 277 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ ++ G+A DI+E+K++ E I A+ D LT +PNR F DRL + + Sbjct: 278 ENDRRVIGLYGVARDISERKRAEEIISFQAYHDQLTHLPNRVLFKDRLELAIAQAQRRTG 337 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 VM IDID++K +ND G A GD +L ++ R+ L+ D LARL G+ F ++L Sbjct: 338 A-LAVMFIDIDRFKLVNDTFGHAEGDLLLRAIASRLSATLRRGDTLARLGGDEFTVLLPD 396 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 N A + ++A P+ L + E T S+G A + T+ ++ ++A+ AMY Sbjct: 397 INQPEDAEVIARKVLDALATPVRLSQGEFRATVSVGIALFPRDGTTAEDLTRHADAAMYQ 456 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 K G N F ++ DR+ ++ DL AV EL L Y P + L IVGLEAL Sbjct: 457 VKRSGKNAFRFFDPELNTRHRDRIALENDLRGAVARGELDLHYQPQVSLATRGIVGLEAL 516 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+HP G I + F+ +AEE+ +I I+ ++LE + W+ + P + IN++ Sbjct: 517 LRWNHPGLGAIPPATFIQVAEEVGLISEISNWVLETACAQLARWQAEGVGAP-RVSINLS 575 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + D ++ ++A + + +PS +++ +E ++M + + LR+ GIS+ +D Sbjct: 576 ACDFQRGDVVGRIRACLDRHGVAPSCLEVEITEGLMMDDTADIAAKVRALREAGISVAID 635 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYG 920 DFGT S L+YL P T+K + S + I+ +I +A+ + ++A+ + Sbjct: 636 DFGTGYSALAYLQRFPVSTLKIDRSFVRDLEGPMTNPIISAITGIARGFDLDLVAEGVEN 695 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L +GC+ +Q A P + L++ Sbjct: 696 LEQADALRALGCEVMQGYLFARPAPAGEVPGWLRQ 730 >gi|163849063|ref|YP_001637107.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222527033|ref|YP_002571504.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Chloroflexus sp. Y-400-fl] gi|163670352|gb|ABY36718.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222450912|gb|ACM55178.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Chloroflexus sp. Y-400-fl] Length = 695 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 139/576 (24%), Positives = 266/576 (46%), Gaps = 6/576 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + ++ Q + + S D + D +P T+LG + Sbjct: 118 LRERRLIIERQQAEQALRRSERLFRAMIERSSDAISIVDRDGFIRYASPSTQTLLGYPTE 177 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 +IH DR+ + + + EFR R A+ + W+ Sbjct: 178 GFLTQPVEGFAFIHPADRERVQRLFLDIIQQSGASAMVEFRARHANGGWRWIEATASNWL 237 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + + I DITE+K + D LTG+PNR DRL + S + Sbjct: 238 D-DPAVQGVIVNYRDITERKLMELRLQHGVLHDALTGLPNRVLLSDRLAQAIKRSQRNPQ 296 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V+ +D+D +K IND G VGD LV+ R+ L+ D ARL G+ F I+L Sbjct: 297 YHFAVLFLDLDHFKVINDSFGHPVGDRFLVTAASRLHSCLRSIDTCARLGGDEFVILLDD 356 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + A + + +++P+ + + + + SIG ++ +E+L++A++AMY Sbjct: 357 IHSLDAVVQVARRIIQQLSLPVEIDGQMLHSSVSIGIVFGSAEYNDPAEVLRDADIAMYR 416 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + E F + R+ ++ +L AV E + Y PI+ + ++G EAL Sbjct: 417 AKASGKSRYEVFHPAMREAAQARLALENELRRAVAQREFIVYYQPIMNISSGGLIGFEAL 476 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINI 800 ++W HP G ++ + F+ +AEE+ + AI +LE + + + +W+ + + + +N+ Sbjct: 477 VRWQHPTRGILTPAAFLDVAEEVGLGDAIGWQVLEHVCQQLATWQHTFSHAAHLSVSVNL 536 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +++ + +L + L+++ P+ +KL +ES +M + + +L RLR GI + + Sbjct: 537 SARQFMQPDLYARIVQLLTQYNIPPNCLKLELTESALMEYSQEAAAVLARLRSYGIQIAI 596 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918 DDFG S LSYL +P D +K + + + + AI+ +I+ +A+++ ++A+ + Sbjct: 597 DDFGVGYSSLSYLIQLPIDQIKIDRNFIIQLDQAHHSQAIVSAIVNLARSLNLEVVAEGL 656 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + + +GC Y Q + PL +LL+ Sbjct: 657 ETAEQVDRMRTVGCHYGQGYLLGYPLPAAEASRLLQ 692 >gi|218885318|ref|YP_002434639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756272|gb|ACL07171.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1076 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 158/577 (27%), Positives = 276/577 (47%), Gaps = 11/577 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGS 444 ++ Q + R + + ++ ++ P +A ILG Sbjct: 488 LMLENAERRTVEQALRRAEARFRGIFEHALEGIFQSTPEGRFLSVNPAMARILGYEGVQE 547 Query: 445 MHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + + ++ RD F ++ +EFR R W+ + R + Sbjct: 548 LLEGVESIGDGVYADPARRDEFVARMEEHGQVNA----FEFRGRRKGGDLIWLSVNARRV 603 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 ++G + Y G D+T +S E + AF D LTG+PNR F DRL L +A Sbjct: 604 PGADGATMYYEGFLEDVTMGHESRERLEHQAFHDPLTGLPNRVLFHDRLQMALKRAARRR 663 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 N ++ +D+D++K IND LG VGD +L ++ ++ E ++ D +AR G+ FG++L Sbjct: 664 NYTFAMLYLDLDRFKVINDSLGHDVGDALLKVVSAKLRECVRDVDTVARFGGDEFGVLLE 723 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 A +R +A P+ + E+ TASIG T T E++++A+ AMY Sbjct: 724 ETPTRGTAVRVARRIRAHLAEPVRIGPHEVFTTASIGIVLRTDQYSTPEELVRDADTAMY 783 Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G + + F + I+ DL AVE E+ L Y P++ L D + G+EA Sbjct: 784 RAKEQGQSRFKVFNKRMREEALRLLTIETDLRRAVERQEMRLHYQPVVALEDGGLHGVEA 843 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W + G+IS +EF+ +AE+ +I +I F LE + + W + PP + +NI Sbjct: 844 LLRWTRTEGGDISPAEFVPVAEDTGLITSIGAFALEEVCLQLRRWNEAGLPPPGVVHVNI 903 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + + L ++ L+ +T P ++ +ESV+M + ++ ++ +LR +GI L L Sbjct: 904 SGRQFMQPGLPHAVEMLLERTGTDPRSLRFEVTESVLMRHGSQAITVMAQLRDLGIRLCL 963 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L YL +P D++K + S + G R AI+RSI+ + ++ I+A+ + Sbjct: 964 DDFGTGYSSLGYLKRLPVDSIKIDRSFVAGLEHDRDGQAIVRSIVSLGLHLGLEIVAEGV 1023 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L +GC Y Q A P+ + + +L Sbjct: 1024 ETPTQAEMLASLGCRYAQGFLYAPPVSADDLAAMLDA 1060 >gi|269925562|ref|YP_003322185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Thermobaculum terrenum ATCC BAA-798] gi|269789222|gb|ACZ41363.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Thermobaculum terrenum ATCC BAA-798] Length = 1785 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 146/637 (22%), Positives = 288/637 (45%), Gaps = 13/637 (2%) Query: 329 HGMKGYERAVLLIPA---WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 Y + + + I + G L ++P + + + Sbjct: 1150 ASFNIYPPEIRYLQSGVIRSAISVGIGGQSSPY-GLLCAYSLEPRIFSPDDINFLQSVSN 1208 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDI--VWDWDIVRDRVTTTPDIATILGLASG 443 ++ + +Q + R V + + + + +P + +LG Sbjct: 1209 ILAAAIEYRRAAQDLMRAEARYRKLVEQIPAVTYIEEMGMRGVVSYISPQVEDMLGYTPE 1268 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 W IH +D ++ T ++ + E+R+ + + W+ + Sbjct: 1269 EWTSNPDPWSRIIHPDDYEDVATSMEKA-EELGIPFRKEYRMISKSGEIVWVRDEAVIVR 1327 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ G L + G+ +IT++KK + + AF D LTG+PNR F+DRL L + ++ Sbjct: 1328 DAEGQPLFWQGVLVNITDKKKLEDKLAYQAFHDALTGLPNRALFMDRLKGALARAKRYNS 1387 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V+ +D+D++K +ND LG GD +L+ + R+ +++ D +AR G+ F I+L Sbjct: 1388 C-CAVLFLDLDRFKHVNDSLGHQYGDQLLIEVGNRLLSVVRSADTVARRGGDEFTILLEP 1446 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 A + K + P + +E+ ++ SIG A + E++ NA++AMY Sbjct: 1447 ICELEYAKQVAERVIKELEKPFLINGQELYISTSIGIALSNE-YSDAEELIHNADVAMYW 1505 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK RG E + +S ++ ++ +L AV+ E LVY P++RL D+E+V LEAL Sbjct: 1506 AKSRGRARYEVYDLSMSTFTLEKLKLESELRRAVQREEFSLVYQPVVRLRDKEVVALEAL 1565 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G + +F+ E+ +I + +ML + R W+ + + +N Sbjct: 1566 LRWHHPERGLLLPDQFLKELEDTGLIMPLTDWMLREVCRQHKEWQKRVAGELPLVSVNFT 1625 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ + E + +++ SPS ++L +E+V M + + + L+ +G+ L LD Sbjct: 1626 ARQFQKATMLEDLASILQDMDVSPSCLQLEITETVAMDDAASTARTMKGLKDLGVKLALD 1685 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 D GT S LSYL P D +K + + + G AI+ +++ +AK++ + A+ + Sbjct: 1686 DVGTGYSSLSYLRKFPLDVLKVDRTFVMGLGVDPDSTAIVHALVMLAKSLGMLVTAEGVE 1745 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ + L+ +GCD Q + P+ + I +L Sbjct: 1746 KQVQVDALSTLGCDLAQGYFFSRPMEPDRITDILVRH 1782 Score = 126 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 4/179 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + I L + DN+ +Q + ++ I + V ++ + ER Sbjct: 457 VVGVITLSKVGLNQFDNEDLQLLV---ILADQAAIAIENAKLVEKLSLEAEALRKSEERN 513 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRT 466 L + D +WDWD+ +R+ I + G + I W H +D + R Sbjct: 514 QLISRATNDAIWDWDLSTNRIIWNDAIQRLFGYEADHEFETSIEWWEERCHPDDIERLRE 573 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L + E+R R AD + +++ R + +++G +R +G DIT + ++ Sbjct: 574 SLYGAINSDADVWAEEYRFRKADGSYAYVLDRGYIVRDASGKAIRAVGSMLDITHRIEA 632 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 2/155 (1%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + + + ++ + ER S + D + T + ILG Sbjct: 616 AIRAVGSMLDITHRIEAAKALRESEERFKAIFEDSAIGMALIDQEGRILKTNKALTKILG 675 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + N+L +H + R + E R D W + + Sbjct: 676 YTQNDLIEK--NFLELVHPDHESTLRGRFTRIFSGKNTHYHVEQRYIHKDGHEIWGNLTV 733 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +GD+ + + DIT +K++ IL A Sbjct: 734 SAIRSHSGDVDLAVCMLEDITSRKQADSRILFQAR 768 Score = 55.3 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 53/179 (29%), Gaps = 16/179 (8%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 I L I+ + + +L T + + F + + Sbjct: 724 GHEIWGNLTVSAIRSHSGDVDLAVCMLEDITSRKQADSRILFQARL----------LDQV 773 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVG 473 V D+ V + + G G + I + +N R ++ + Sbjct: 774 PVAVIACDMQMRVVHWNSAASDLFGYTPQEAIGKEVFELASTI--DKSENIREVIQVVLR 831 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R + +F + + I + + ++ + + D+++QKK E + Sbjct: 832 EGSWRGEVDFPLEDR---VVPAQVEISAVRDKRRMLVGLVAVIVDLSDQKKVEERLRRQ 887 >gi|120553189|ref|YP_957540.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] gi|120323038|gb|ABM17353.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] Length = 890 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 147/565 (26%), Positives = 275/565 (48%), Gaps = 13/565 (2%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDW--DIVRD--RVTTTPDIATILGLASGSMHGPIRNWL 453 + + A+ S + + D RD + + + G + + G +L Sbjct: 328 ESRARKLQLYDRAIEESSNGIVICLADKTRDNPVIYANRAFSIMTGYSHDEIIGLSPRFL 387 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + + L + + + G + R D W + + + N +G+I +I Sbjct: 388 --LANDLAQPGLERLRNCMRH-GGSARAILRNYRKDGSLFWNEVALAAVHNEHGEIAHFI 444 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + ND+T++K+ + A D+LTG+PNR DRL + + ++ + V+++D+ Sbjct: 445 SVFNDVTDRKRYEAALEYQANHDDLTGLPNRNLLRDRLEHAITKATR-EHTKLAVLLLDL 503 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K++ND LG +GD ++ + R+ + ++ D +ARL G+ F I+ + A Sbjct: 504 DQFKRVNDGLGHKIGDTLIQRVASRMSQCVRDSDTVARLGGDEFMILSTDIRDERAAATL 563 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + + + + EI +ASIG A + E+ +NA+ AMY AK G N + Sbjct: 564 AQKLLRQFRQKVAINGHEIIASASIGIAMFPKDGDNGDELFRNADTAMYRAKDVGRNGFQ 623 Query: 694 SF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + +++ +R+ +++ L A+ +L L Y P + L + EALI+W HP+ G Sbjct: 624 FYSAEMNNRMRERLYLEQSLRNAIGLHQLSLWYQPKLDLASGSVKSAEALIRWRHPQLGM 683 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS +F+ IAEE +I I +++E +R + WRDQ I + INI++ L +L Sbjct: 684 ISPGDFIPIAEETGLILPIGAWVIEEASRQLAKWRDQE-NQDIRVAINISAYQLSHGKLT 742 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + + P + + +E+ +M +++ L LR++GI + LDDFGT S L+ Sbjct: 743 DQVIQALDSLGLDPQSLTIEVTETAIMPQMDKAVCELQSLREMGIRVALDDFGTGYSSLT 802 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P D +K + S ++ E+ AI+++II +A N+ T++A+ + E ++ L Sbjct: 803 YLKRFPIDILKIDRSFVSDIADDEESGAIVKTIINLAHNLNMTVVAEGVETEAQLEFLRT 862 Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954 GCD +Q + PL L+ L+ Sbjct: 863 NGCDEVQGYYFCKPLPSEECLEFLR 887 >gi|253701315|ref|YP_003022504.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M21] gi|251776165|gb|ACT18746.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M21] Length = 704 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 150/588 (25%), Positives = 288/588 (48%), Gaps = 23/588 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++G+ V + A+G Q + + A + W+WD+ + + ++ +I + Sbjct: 119 VLGYRVSYMLRASGALEQ-LRESRAGLAHAQSLAHIGSWEWDLATGEIRCSEEVYSICSI 177 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G L +H D + ++ + +R L +++R+ + + + Sbjct: 178 DRSLKGGNPI--LDPVHPLDLGFVQGAIEEAI-GKRAPLSFDYRITLGAGE-RTLHAELV 233 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + G+ + G DITE+K + E I A+ D LTG+PNR+ FL +L L + Sbjct: 234 TVLDEQGEPVCLTGTIQDITERKHAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANR 293 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR--------- 611 D + V+ +D+D++K +ND LG VGD +L + R+ ++ D LAR Sbjct: 294 HDRM-LAVLFLDLDRFKLVNDTLGHGVGDRLLQDVADRLLRCVRRGDCLARADEECPPSL 352 Query: 612 ---LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 L G+ F I+L + +A A + +++++P +L +E+ V+ SIG + + Sbjct: 353 VSRLGGDEFTIMLCDIEHFQDVAKIARRILEAVSVPYSLEGQEVFVSTSIGISLYPFDAT 412 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726 T+S++++NA+ AMY AK +G N + + S ++ L A++ E + Y P Sbjct: 413 TASDLIRNADGAMYQAKEQGRNGYQIYDESMNAKALERIILESQLHKALKEEEFTVYYQP 472 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + +VG+EAL++W+ + G + F+ +AEE+ ++ I+ +++ R W Sbjct: 473 QVSSQTGLVVGIEALVRWNSKELGLVEPGRFLPLAEEIGLVIQIDQWVMREACRQHKLWL 532 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 D PP+ + INI+ + + NEL E + +++ ++ P ++L +E V+M + ER+ Sbjct: 533 DAGL-PPVTLAINISGQQFMKNELLETVTSVLKESGLDPGLLELELTEGVLMAHTERTVK 591 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 L L+ +G+ L +DDFGT S LSYL P D +K + + + AI + I Sbjct: 592 TLQALKGMGVRLAIDDFGTGFSSLSYLKRFPLDVLKIDRTFINDITTDPDDAAITLATIE 651 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 MA ++ +IA+ + + ++ LT+ GCD Q + P+ + +L Sbjct: 652 MAHTLKLKVIAEGVETKPQLEFLTKNGCDMYQGYLFSKPVPSTELPRL 699 >gi|291614129|ref|YP_003524286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291584241|gb|ADE11899.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 1152 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 141/616 (22%), Positives = 268/616 (43%), Gaps = 17/616 (2%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 + Q + +I + + + + +R +G+ Sbjct: 539 QVLGTFAIYHHQAYTPTESDIQLIEQSARLASIAIERKRSEEALHYSEKRFRDVNDAAGE 598 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 VW+ + + G + G + ++ + D + R I++ + Sbjct: 599 YVWEMGTDMVYTYVSNRSVDVKGYVPDELLGHTP--MEFMPVEDIPHVREIVNRAIA-SN 655 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + + R W + P + +G+++ G +IT++K++ E I AF D Sbjct: 656 TSFKLQHRDITKSGTLLWEEVNGVPFFDEHGELMGLRGTGMNITDRKRAEEEIKSLAFYD 715 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LT +PNR+ +DRL L S ++ ID+D +K +ND LG +GD +L + Sbjct: 716 PLTHLPNRRLLVDRLQHALASSTRSGR-EGALLFIDLDNFKTLNDTLGHDIGDLLLQQVA 774 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLERE 651 R+ ++ D +ARL G+ F ++L + + + + ++ P L E Sbjct: 775 LRLASCVREGDTVARLGGDEFVVMLEELSEQTLEAAAQTESIGEKILLTLNQPYLLAAHE 834 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709 + SIG + + + E+LK A++AMY AK G N + F + ++ Sbjct: 835 YRNSPSIGATLFGNKPQSIEELLKQADIAMYQAKKAGRNTLRFFDPQMQETVIARALLER 894 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 +L A+EN + L Y I E G EALI+W HP+ G I + F+ +AEE+ +I Sbjct: 895 ELSKALENDQFQLYY-QIQMTDLNEPFGAEALIRWIHPERGLIPPNHFIPLAEEVGLILP 953 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I L++L+ I W A+ + + +N++++ ++ +Q ++ + +P R+K Sbjct: 954 IGLWVLDTACNQIKIWEKNASTRELVLAVNVSARSFFQDDFVTQIQTVLQRHAINPKRLK 1013 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES+++ + E++ + L+K+G+ +DDFGT S L YL +P D +K + S + Sbjct: 1014 LEITESMMLNSIEQTIEKMNALKKLGVQFAMDDFGTGYSSLQYLKRLPLDQLKIDQSFVR 1073 Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 AI+ +I+ MA ++ +IA+ + E + L GC Q P Sbjct: 1074 DIATDSSDKAIVTTIVAMAHSLNLDVIAEGVETEQQRQLLIESGCSQYQGYLFGKPAPIR 1133 Query: 948 SILKLLKERFPLVKNT 963 + LK P ++ Sbjct: 1134 QFEESLK---PGLRQA 1146 >gi|332702569|ref|ZP_08422657.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] gi|332552718|gb|EGJ49762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] Length = 684 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 153/627 (24%), Positives = 305/627 (48%), Gaps = 15/627 (2%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI--VILIGFTVIQHVLATGYFS 397 L+P + + +A + + + + G V V+L + VL Sbjct: 61 LVPERDAGILQGLLGRLAADGQARDTVHLVSRDGLCVAFTLVLLRENGNVVGVLRRHADD 120 Query: 398 QGIFSDGERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + E + L + + + D + P + I G + G + L Sbjct: 121 ETRMRAAEHERLVADEVYRNAIEGITVTDSHARILFVNPAFSKITGYTAEEALGQTPSIL 180 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 H++D+ ++ + + + + G+ + E R + + + + I + + G + RY+ Sbjct: 181 KS-HLHDQAFYKAMWQALINH--GQWEGEIWNRRKNGEVYPEWLSISSVRDGLGKLQRYV 237 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + +DITE K S E + A D LTG+PNR DRL T L A + ++ +D+ Sbjct: 238 AVFHDITEIKASQEKVRHQAHHDVLTGLPNRLLLKDRLATSLTHMARSGQ-KVALLFMDV 296 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K IND LG +GD +L ++ R+ E+++ D +ARL G+ F I++ + + Sbjct: 297 DNFKHINDSLGHPLGDLLLQAVAARLKEVMRDDDTVARLGGDEFVILVEALESENLAIAT 356 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A+ + ++ +P ++ +TVT S+G A + + ++KNA++AMY AK +G N + Sbjct: 357 AMRLLEAFRVPFHIKGHALTVTPSVGIALYPDDGDDAETLIKNADMAMYRAKEKGRNTFQ 416 Query: 694 SFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + + R+ ++ +L A+E ++ + P + L + +VG EAL +W P Sbjct: 417 LYTSALNERAVRRMTMEGELRKALERGDIQPWFQPRVGLRNGSVVGSEALARWIKPDGTV 476 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + +LE+ R + +++D P ++ +N++ + +L Sbjct: 477 ISPGEFIPLAEETGLILPLGEQILEQACRRVRAFQDA-GFPEQYVSVNLSPRQFRQKDLV 535 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ ++ +T + ++L +ES ++ + +++ L RLR++G+++ +DDFGT S L+ Sbjct: 536 GMVERVLQRTGFDSRLLELEITESSLVQDIDQTMATLRRLREMGLAVAIDDFGTGYSSLA 595 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL + P +K + S + G IAI +II MA+++ +IA+ + + + Sbjct: 596 YLKHFPLGALKIDQSFIRGIPTDPSDIAITTTIISMAQSLNLKVIAEGVETLQQLNFILG 655 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 + CD Q + + PL + L+LL++R Sbjct: 656 LRCDEYQGYYFSKPLPPEAYLELLRQR 682 >gi|186475160|ref|YP_001856630.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Burkholderia phymatum STM815] gi|184191619|gb|ACC69584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] Length = 1040 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 146/567 (25%), Positives = 268/567 (47%), Gaps = 16/567 (2%) Query: 407 QSLAVLGSGDIVWDWDI--VRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 QS A+ S + + + + + P I G + G L +DRD Sbjct: 478 QSRALDASVNAILITEPSKEGNLIEYVNPAFKRITGYDPQEVIGQDCRLLQR---DDRDQ 534 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + R + R D W + I P+ +++G +I + ND+T Sbjct: 535 EGIAAIRQALAANRE-VSAVLRNYRKDGALFWNQLYIAPVPDADGQTTHHIAVINDVTAL 593 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + E + A D+LT +PNR DRL L ++ V+ ID+D +K +ND Sbjct: 594 IRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKG-VAVVFIDLDGFKNVNDS 652 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +VGD +L + R+ + D +AR G+ F I++ + + + +R SI+ Sbjct: 653 LGHSVGDRLLSVVADRLARCARASDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRASIS 712 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700 P+ L E+ V S+G + + + ++K A+LAMY AK G N + ++ Sbjct: 713 EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNVS 772 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ ++ L A+ ++E L Y P + + ++VG+EAL++W P+ G I S+F+ + Sbjct: 773 AGARLNLERRLRRALRDNEFLLHYQPQVDIETGQVVGMEALVRWHDPEVGLIPPSQFIPV 832 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I ++ ++L R +W+D+ PP + +N++++ ++ + + ++ + Sbjct: 833 AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARQFQQRDIAKLVMQVLEE 891 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P ++L +ES +M N E + +L L +GI L +DDFGT S LSYL P D Sbjct: 892 TGLDPQYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 951 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S ++ + I +II +A ++ +IA+ + + L CD +Q Sbjct: 952 LKIDRSFVSDIGESSDDETITSAIIALAHSLNLQVIAEGVETSTQLDFLKERACDEMQGY 1011 Query: 939 HVASPLGFNSILKLLKE--RFPLVKNT 963 A PL ++I +L+ + P ++ Sbjct: 1012 FFAKPLPHHAIPGMLQRGSQSPAMETA 1038 Score = 44.6 bits (104), Expect = 0.085, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 20/181 (11%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 ++ DI A+ + ++ V + + ++ Sbjct: 313 QISADISYHAMTFMGRPALFVLAD----DVTEQINAEAEAQRSNQMLETVIDNIPQRIFW 368 Query: 421 WDIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVG 473 D + A GLA + G P R + + D D + + Sbjct: 369 KDKELRYLGCNMAFARDAGLAYPEQVIGKRDEDMPWRAFAEALGRQDTDVMLSGVPKM-- 426 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + + D + P ++S+G ++ +G DITE+K++ + + Sbjct: 427 ----NYETDLVI---DGVHRTTVTSKLPFTDSDGRVIGVLGSYTDITERKRADLALRLQS 479 Query: 534 F 534 Sbjct: 480 R 480 >gi|283138910|gb|ADB12513.1| putative signal transduction protein [uncultured bacterium 9F08] Length = 965 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 186/831 (22%), Positives = 336/831 (40%), Gaps = 53/831 (6%) Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISID 235 W + + G A +L + + L + Sbjct: 9 WREERSMAAWATDMSLIYFVYGAAFILMGVSILRQPKPVEGCHLGQIIWLLA-LFALFHG 67 Query: 236 FGFLSKLVNLPSGELLIWRACSEIALSSS---LIIFLFMYLH--WNRWHAKVGYITFSGI 290 L+N+ G + A + L S L+ F L RW + I + Sbjct: 68 INEWLDLLNIVHGASPLLDALRGLILPFSFLPLLEFARRLLQPWLGRWASPWLLIVPIAV 127 Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY------HGMKGYERAVLLIPAW 344 + L + + AS I L +L + Y G RA L++ Sbjct: 128 VVLTALISQLDWLAISVASRYAIGLPGALLAGIGLLRYSRTDEPWADHGRVRAALVVVGL 187 Query: 345 ILIFIWFIGLWMAITKRLD-----NDIIQP--------------ALVGGLVLIVILIGFT 385 L + + + N AL G + +L F Sbjct: 188 ALAIYGLLTGLIVPPLDIPLARSLNSQWFLEQTGVPVQLFRALCALTAGAAIWYVLHTFE 247 Query: 386 V------IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + Q T G+ Q + + + D + D + P + G Sbjct: 248 IGRERQLHQMASETQQALHQARQLGQEQQMILDAAADAIIGLDNRGRVTFSNPAATALFG 307 Query: 440 LASGSMHGPIRNWLPYIHI----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 ++ + G + IH+ L + + +R D + Sbjct: 308 YSAEELQG--EDLHALIHLCKEGEAHPREECGLWRLLRFGGQYHSGHETLRHKDGTPLPV 365 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + + G ++ + DI+E+ + + A D LTG+ NR RL Sbjct: 366 EMNGSAIDDEKGVVIGAVLTFRDISERLSYEQELERRAHYDELTGLANRVLLKARLQQTT 425 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + V+ +D+D +K +ND LG GD +LV++ +R+ +++ D +AR G+ Sbjct: 426 AQAHRHGK-SVAVLFLDLDHFKIVNDGLGHDCGDRLLVAIAQRLQTVVREADTVARHGGD 484 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L +N A+ + + IA P+ + E E+ TAS+G + + +L+ Sbjct: 485 EFVIVLSEPDNGEDAAEIGRRLLQRIAEPVWIDEHELYTTASVGVSLFPRDGTDVDTLLR 544 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+ AMY AKH G N+++ + S R+ + L AVE +EL L Y P L Sbjct: 545 NADAAMYRAKHLGRNNLQFYSEEMNLSLSKRLRMLSQLRQAVERNELCLHYQPQASLPGG 604 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 ++G+EAL++W HP+ G +S +EF+ +AEE +I+ I ++L R ++W P Sbjct: 605 RLLGVEALVRWQHPELGMVSPAEFIPLAEESGLIEPIGEWVLREACRQGVAWDRA-GFMP 663 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + I +N++++ + +L + ++ ++ +T +P R++L +E+ ++ NP++S L +R Sbjct: 664 LRISVNLSARQFDNPKLDDTIRDVLEQTGLAPERLELELTETALIANPQQSVQRLSAIRD 723 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ L LDDFGT S L+YL FD +K + S + + AI+R++I MA+ + + Sbjct: 724 LGVRLALDDFGTGYSSLAYLQRYTFDLIKIDRSFVADAIRNPGNAAIVRTVIAMARLLGS 783 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 IA+ I L R GCD +Q +++ PL I +L FP+ Sbjct: 784 ETIAEGAETAETITFLGRNGCDAVQGYYISRPLPAGEIEQL----FPIDNR 830 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] gi|151282196|gb|ABR90606.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 956 Score = 565 bits (1457), Expect = e-158, Method: Composition-based stats. Identities = 152/675 (22%), Positives = 296/675 (43%), Gaps = 31/675 (4%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 L FY +K A+ A+++ + + Sbjct: 287 FGLPAWLFYDQPEPYDHVFDVAGKTWSMVVSTPSMLFLKNSSSALW---AFLVGLLLSVV 343 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413 + + +D LV + + +I + A + + + + A+ Sbjct: 344 SAIYVQLIVDRSRRIQLLVDDRTAQLRTVNDDLIADIAARKHAEHEL----QLRERAIEA 399 Query: 414 SGDIVW-------DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN--F 464 S + + D+ + P I G + G +L D + Sbjct: 400 SANAIIIARAVAPDYPLE----YVNPAFTRITGYSPEEALGRNIGFLWG---KDWEQPGI 452 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + R G R D W + I P+ + G++ ++ DIT K+ Sbjct: 453 EELRSIALEKREG--HAVLRNYRKDGALFWSDLYIAPVKDDTGEVSHFVVALYDITATKR 510 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + +D LTG+ NR DRL+ + + ++ + +D+D++K +ND LG Sbjct: 511 YESELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNH-PIWIAFVDLDRFKFVNDTLG 569 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD +L ++ R+ ++ D ++R+ G+ F +IL ++ + IA P Sbjct: 570 HQAGDLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILPERVDAGLSTGIVQRIMDGIAQP 629 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702 + + E +++SIG A + + +T E++K+A++AMY AK G N+ + + ++ Sbjct: 630 LTIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKETGRNNFQFYTSSMNERAL 689 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 +R+ ++ DL A+E E L Y P + L +IVG+EALI+W HP+ G I F+ +AE Sbjct: 690 ERLRLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAE 749 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I I +++ R W++ + + +N++++ +L E + + +T Sbjct: 750 ETGLIVPIGAWVIREACRQNKVWQEHGLG-SLRMSVNLSARQFAQQDLLESIALALEETQ 808 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P +++ +ES+VM + + + +L L+ +G+ L++DDFGT S LSYL P D +K Sbjct: 809 LPPQCLEIELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLK 868 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + AI+ SII +A ++ T+IA+ + E + L + CD IQ Sbjct: 869 IDRSFVNDITTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFF 928 Query: 941 ASPLGFNSILKLLKE 955 + P+ +++ +LK+ Sbjct: 929 SRPITADAMEVMLKD 943 >gi|197117893|ref|YP_002138320.1| response receiver sensor diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] gi|197087253|gb|ACH38524.1| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 704 Score = 565 bits (1457), Expect = e-158, Method: Composition-based stats. Identities = 153/591 (25%), Positives = 289/591 (48%), Gaps = 23/591 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++G+ V + A+G Q + + A + W+WD+V + + ++ +I + Sbjct: 119 VLGYRVSYMLRASGALEQ-LRESRAGLAHAQSLAHIGSWEWDLVTGEIRCSEEVYSICSI 177 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G L +H DR + +D + +R L +++R+ + + Sbjct: 178 ERSFKGGNPI--LDPVHPLDRGFVQGSIDEAI-GKRAPLSFDYRI-TLGGGERTLHAELV 233 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + G+ + G DITE+K++ E I A+ D LTG+PNR+ FL +L L + Sbjct: 234 TVLDEQGEAVCLTGTIQDITERKRAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANR 293 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR--------- 611 D + V+ +D+D++K +ND LG VGD +L + R+ ++ D LAR Sbjct: 294 YDRM-LAVLFLDLDRFKLVNDTLGHGVGDRLLQDVADRLLRCVRRGDCLARADEECPPSL 352 Query: 612 ---LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 L G+ F I+L + +A A + +++++P +L +E+ V+ SIG + + Sbjct: 353 VSRLGGDEFTIMLSDIEHFQDVAKIARRILEAVSVPYSLEGQEVFVSTSIGISLYPFDAT 412 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726 T+S++++NA+ AMY AK +G N + + S ++ L A++ E + Y P Sbjct: 413 TASDLIRNADGAMYQAKEQGRNGYQIYDESMNAKALERIILESQLHKALKEEEFIVYYQP 472 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + +VG+EAL++W+ + G + F+ +AEE+ ++ I+ +++ R W Sbjct: 473 QVSNQSGRVVGIEALVRWNSKELGLVEPGRFLPLAEEIGLVIQIDQWVMREACRQHKLWL 532 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 D PP+ + INI+ + + NEL E + +++ ++ P ++L +E V+M + ER+ Sbjct: 533 DA-GFPPVTLAINISGQQFMKNELLETVTSVLKESGLDPGLLELELTEGVLMAHTERTVK 591 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 L L+ +G+ L +DDFGT S LSYL P D +K + + + AI + I Sbjct: 592 TLQALKGMGVRLAIDDFGTGFSSLSYLKRFPLDVLKIDRTFINDITTDPDDAAITLATIE 651 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 MA ++ +IA+ + + + LT+ GCD Q + P+ + +L Sbjct: 652 MAHTMKLKVIAEGVETKPQLDFLTKNGCDMYQGYLFSKPVPSTELPRLFNR 702 >gi|288958667|ref|YP_003449008.1| hypothetical protein AZL_018260 [Azospirillum sp. B510] gi|288910975|dbj|BAI72464.1| hypothetical protein AZL_018260 [Azospirillum sp. B510] Length = 769 Score = 565 bits (1457), Expect = e-158, Method: Composition-based stats. Identities = 175/579 (30%), Positives = 296/579 (51%), Gaps = 7/579 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q + ER +LA G+ D +WDW I V +P +LG Sbjct: 182 VGSQADVTDRKTAEQRLRQSEERYALAAAGAADGLWDWYIESGEVYYSPRWKAMLGFGEA 241 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G I W + D RT +D + R LQ+EFR+R WM++R + Sbjct: 242 EIAGSIEEWFQRVVPGDLAGLRTAIDLHLSGERPHLQHEFRIRDKAGLELWMLVRGLAVR 301 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G +R G DIT KK+ + IL +A D++TG+PNR LDR+ LD + Sbjct: 302 DDRGGAVRMAGSMTDITAGKKAEQQILFDAVHDSMTGLPNRTLMLDRIGQALDRNRRAGA 361 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +++D+D++K IND LG + GD VL + +R+ + D LARLS + F +++ Sbjct: 362 RPFAAIILDLDRFKAINDALGTSAGDRVLRIVAKRLDASRRVGDTLARLSADEFAVLVDD 421 Query: 624 ENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 +++ + A M ++I+ P+ L R++ +TASIG A + + +ML++A LAMY Sbjct: 422 LDDAGEALAAAERMARAISRPVMLEEGRDVVLTASIGVALSQTGYDRAEDMLRDASLAMY 481 Query: 683 HAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G ++ F + + ++ DL AVE L L Y PI+ L I G EA Sbjct: 482 RAKSGGRARIDLFDANLRRQAMTAMRMEADLRGAVEQGHLCLHYQPIVLLETGAIAGFEA 541 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILIN 799 L++W+HP G + +EF+ +AEE +I + + LE+ R + +W+ + P P+F+ +N Sbjct: 542 LMRWNHPDRGLVPPAEFIPLAEETGLIAPMGRWALEQAVRQLAAWQARFPRPVPLFMSVN 601 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ + D+++ ++ L+ PS +KL +ES+++ +P+ R+LL LR +G+ L+ Sbjct: 602 VSIRQFRDDDIVGAVRDLLDAVPIPPSSLKLELTESLLVQDPDECRMLLQSLRDMGVRLS 661 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL +P + +K + S + + E AI++ I +A + +A+ Sbjct: 662 IDDFGTGYSSLAYLHKLPVNVLKIDRSFVRALSTGEGNAAIVQVIAGLATILRLDAVAEG 721 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + L + C Y Q H A P ++ +LL Sbjct: 722 VETAEEAVYLRGL-CKYAQGYHFARPAPPEAVERLLAAE 759 Score = 130 bits (327), Expect = 1e-27, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 3/151 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + Q + ER +LA S D ++DWD+V DRV +P A++LGL+ Sbjct: 50 VGSVADITDLKHAEQELRRSEERYALAAAASNDGLYDWDLVTDRVYYSPRWASLLGLSPA 109 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR---LQYEFRVRAADNQFHWMIIRIR 500 + + WL I DR + Q E+R+R A WM R Sbjct: 110 ELTDHPQEWLGRILPADRGILTDAMAFLGAEGGDPNAAFQVEYRMRNAAGAIRWMACRGI 169 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + ++ G +R +G D+T++K + + + Sbjct: 170 AVLDAAGKAIRLVGSQADVTDRKTAEQRLRQ 200 Score = 45.3 bits (106), Expect = 0.051, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 474 YRRGRLQYEFRVRAADN--------QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 Q E RV A + ++ W++ R + + G+ +R +G DIT+ K + Sbjct: 3 GLSVPFQIEHRVCRAGSGQAAGGKPRWRWLVCRGMAVMDDAGEPVRLVGSVADITDLKHA 62 Query: 526 LEGIL 530 + + Sbjct: 63 EQELR 67 >gi|119899351|ref|YP_934564.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Azoarcus sp. BH72] gi|119671764|emb|CAL95678.1| GGDEF/EAL/PAS/PAC/GAF-domain containing protein [Azoarcus sp. BH72] Length = 1006 Score = 565 bits (1457), Expect = e-158, Method: Composition-based stats. Identities = 148/646 (22%), Positives = 260/646 (40%), Gaps = 20/646 (3%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 GY + L + + + + I + Sbjct: 363 GARHGYRASAALPLHRGGKVFGVL---NLYAGECHAFDEAAQRLLVEMAMDIDFALDRFE 419 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHG 447 + I E+ D++W D +P + + G A + Sbjct: 420 QDAERARLAAAIVDSEEKYRELTESINDVIWTVDPETRCFSYVSPAMRRLSGYAPHELID 479 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGY-------RRGRLQYEFRVRAADNQFHWMIIRIR 500 + R + + E + D W + Sbjct: 480 APIE--RLLKPEYVAEMRERMALHLAEFHVGKRKSEDYSVEEVELGRRDGGTVWAEVVTT 537 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 N + + +A DI+E++ + I A D LTG+PNR DR L+ Sbjct: 538 LGLNRRSGRVEFRAVARDISERRAAEAEIQRLAHYDQLTGLPNRSLVKDRFRYAASLTQR 597 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + VM D+D +K IND LG GD +LV + RR+ +L+ D + RL G+ F + Sbjct: 598 RRG-QLAVMFFDLDHFKNINDTLGHDFGDRLLVEVARRLESVLRGGDTVCRLGGDEFVFL 656 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L ++ A A + +++A P+ L +E+TVT SIG A + + +NA+ A Sbjct: 657 LPD-TDAEGAARVAAKLLEAVAQPLVLDHQELTVTPSIGIAMYPDDGTDFDTLSRNADAA 715 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G N F + + L A++ + L Y P + L D +VG Sbjct: 716 MYQAKREGRNGFRFFTEAMQARSTRTLLLANALRHALDRGQFSLHYQPQVSLADGRVVGA 775 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP++G +S EF+ IAE +I I ++L W D+ PP+ + + Sbjct: 776 EALLRWTHPEFGPVSPGEFVPIAESNGLIAQIGEWVLREAVAQSRRWLDEGL-PPLVMAV 834 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++ + L E + +I + P +++L +E+V M +P+ + ++ L GI + Sbjct: 835 NLSAAQFRNPNLPELVSQVIEEAGLPPHQVELELTEAVAMDDPQSAVRVMDALFARGIRM 894 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S L YL +K + S + AI+ +II +A ++ +A+ Sbjct: 895 SIDDFGTGYSSLGYLKRFKVGKLKIDQSFVRDIGDDPDDKAIVSAIIHLAGSLGMLTVAE 954 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 + + L + GCD +Q + + PL + + L+E L + Sbjct: 955 GVETLDQLDFLRQQGCDTVQGYYFSRPLPAEAFVGYLQESGALTPS 1000 Score = 58.0 bits (139), Expect = 8e-06, Method: Composition-based stats. Identities = 29/260 (11%), Positives = 79/260 (30%), Gaps = 15/260 (5%) Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335 R + + + +A ++F +A + + A + + KG+ Sbjct: 9 RRHAPGLARSAPARVRALASALSLAFVLGTASAPVCALPPAVFQTHLDPGGDW-SGKGHP 67 Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395 L+ A + + + + GL L+ V+ Sbjct: 68 GEGGLLGALAHVVGHDAAHAL-------FSPVARNTLLGLAGTGALLFGGVLLLRARVRA 120 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 ++ + + + D++++ D + + L ++ G + Sbjct: 121 RTRELEGVNRQLGATLDAIPDLLFEMDGEGRYLAVHANREAQLQRPVEALLGRR---VDE 177 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRV-RAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + +T L + R ++ DNQ W + + +G +I Sbjct: 178 VLPA--PAAQTCLAALAEAGRHGWSSGQQIEITIDNQPQWFELSVAR-KADDGGPAHFIV 234 Query: 515 IANDITEQKKSLEGILCNAF 534 ++ DIT ++++ + + Sbjct: 235 LSRDITARRRAEASVQRLSR 254 >gi|297538889|ref|YP_003674658.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297258236|gb|ADI30081.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylotenera sp. 301] Length = 2044 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 147/584 (25%), Positives = 255/584 (43%), Gaps = 14/584 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I LA+ + D R + S + + D + I G Sbjct: 1466 ITLIEQSANLASIAIERKQAEDDLRIASIAFESQEGMMVTDAKNIILKVNQAFCDITGYT 1525 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 S G L + F + V + G E R + + + + Sbjct: 1526 SEEAVGHTPRLLSS--SQHSEGFYDAMWECV-HATGHWAGEVYNRRKNGEVFPQHLTVTV 1582 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + ++NG + ++ DIT K + E I AF D+LTG+PNR+ +DRL L +A Sbjct: 1583 VKDANGIVTNHVATLTDITMNKAAAEEIKHLAFYDSLTGLPNRRLMVDRLNQALVFNART 1642 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 V+ +D+D +K +ND LG VGD +L + R+ ++ D +ARL G+ + ++L Sbjct: 1643 GR-DGAVLFLDLDHFKTLNDSLGHDVGDLLLQQVAERLVSCVREGDTVARLGGDEYVVLL 1701 Query: 622 ISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 S + ++ + S+ L + E T SIG A +++ + E+LK+ Sbjct: 1702 ESLSEDAPEAATQVEVIGEKILASLNQAYQLGQHEYHCTPSIGVALFSNHNQSQEELLKH 1761 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY AK G N + F ++ +L A++ +L+L Y + + Sbjct: 1762 ADIAMYQAKKAGRNTIRFFDPKMQEVINTRVDLERELRKAIDKQQLHLYYQIQVDVA-GR 1820 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +G E LI+W HP+ G +S F+ +AEE +I I ++LE + W + Sbjct: 1821 PMGAEGLIRWLHPEHGLVSPFHFIPLAEETGLILPIGQWVLETACHQLKLWEKDEMTSAL 1880 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + IN+++K + +Q + + +P +KL +ES+++ N E + + RL+++ Sbjct: 1881 TLSINVSAKQFRQADFVNQVQEAVQRYDVNPMLLKLELTESMLLDNIEDTVTTMNRLKEV 1940 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 GI +LDDFGT S L YL +P +K + S + AI+R+I+ MA + Sbjct: 1941 GIRFSLDDFGTGYSSLQYLKRLPLYQLKIDQSFVRDIAVDSSDQAIVRTIVAMAHTLNLN 2000 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +IA+ + E L GC + Q P+ LLK Sbjct: 2001 VIAEGVETEEQQGLLLNNGCTHYQGYFFGRPVPIEQFEVLLKSH 2044 Score = 143 bits (360), Expect = 2e-31, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 1/152 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + +R A+ GSGD VWDWDI + + + ILG + Sbjct: 667 VGTASDISLRKQLEVELKAKDDRWKFAIEGSGDGVWDWDIQSNTIEHSARWKEILGYSPS 726 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502 +W H +D+ + ++ + + E R++ D + W++ R + Sbjct: 727 DTLPTGEDWENRFHPDDKARVAEAMRLYLEGKTSVYRVECRIKCKDGSYKWILGRGMVVS 786 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + +G LR IG + D++++K++ + A Sbjct: 787 RDEDGKPLRMIGTSIDVSKRKQAEIELSIAAT 818 Score = 142 bits (359), Expect = 3e-31, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 1/150 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + R A+ GSGD VWD ++ + T + A +LG + Sbjct: 918 VGTVLDITERKKTEEALIESEYRSKFAIEGSGDGVWDVNVQTEEATYSKRWAEMLGYEAS 977 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502 + W IH D+ +++ + E+R+R D ++ WM+ R + Sbjct: 978 EILPTRDEWRALIHPEDKPRVLAAGTAYLEGKTEIYVVEYRIRCKDGEYKWMLSRGILVS 1037 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532 + +G+ LR IG DITE+K + E + Sbjct: 1038 RDEHGNPLRMIGTQIDITERKLAEEKLKRM 1067 Score = 118 bits (297), Expect = 4e-24, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 1/144 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F + + Q + R A+ G GD +WD D V +T + I+G A Sbjct: 537 FISVVDITELKKIQQDLMERDARWKFAIEGFGDYLWDSDEVSRTITYSKAWIDIVGYAED 596 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502 + + W IH +D+ L S + E+R+ +N + W+ R + Sbjct: 597 ELDHKLNEWESRIHPDDKVAVFANLQSCLDGDTPTYDCEYRILCKNNSYKWIHDRGIVLD 656 Query: 503 SNSNGDILRYIGIANDITEQKKSL 526 + NG LR +G A+DI+ +K+ Sbjct: 657 RSVNGKPLRMVGTASDISLRKQLE 680 Score = 63.0 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 7/124 (5%) Query: 407 QSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD-N 463 S+A S + D R V + G + + G + + + D Sbjct: 813 LSIAATAFESQQSIIIADAKRKIVRVNSEFTKTTGYTAEEVVGQS---IDILKSDKHDTA 869 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 F + + + + G E + + + + + + + + ++ Y+G DITE+K Sbjct: 870 FYKTMWTTISH-VGTWSGEVWNKRKNGDIYPGQLTLTAVKDEHDNVSYYVGTVLDITERK 928 Query: 524 KSLE 527 K+ E Sbjct: 929 KTEE 932 Score = 49.2 bits (116), Expect = 0.004, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 4/149 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 ++ V Q + Q + +VW D + A G S S Sbjct: 1183 VTLEDVTQLKQAEQVMQLRESYQRSLLDNFPFMVWLKDKKHRYLAVNQAFAKASGYDSES 1242 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + + L +R+ + + R E + + + +W I P++ Sbjct: 1243 LLPGLTD-LEVWPKEVAKKYRSDDIAVLKNGVPRASEE--IVEINGRKNWYEIYKSPVT- 1298 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNA 533 +G+++ +G A DI ++K + + Sbjct: 1299 IDGEVVGTVGFARDINDRKHAEMFEQFRS 1327 Score = 47.3 bits (111), Expect = 0.014, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 49/158 (31%), Gaps = 5/158 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 L +I I T + Q + ER + Sbjct: 1045 LRMIGTQIDITERKLAEEKLKRMQLELLESHERYVDLYEFAPIGYLSVTKHGMITEVNWK 1104 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQF 492 + +LGL ++ + ++ +D+ +R + G L ++ +A+ Sbjct: 1105 VTAMLGLQRKDINQHRFD--EFVVDDDKSFWRRQFTMIKEMQGGEELTLSLKLASANGSI 1162 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + M + + + + D+T+ K++ + + Sbjct: 1163 FNANLHCLRMDDDDDQPILRV-TLEDVTQLKQAEQVMQ 1199 >gi|114320258|ref|YP_741941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114226652|gb|ABI56451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 696 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 136/577 (23%), Positives = 253/577 (43%), Gaps = 7/577 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 Q V + + + A + W D VR+ + + ++ I GL G Sbjct: 112 VVSFQDVRERQVAREALERREAELAEAQQIAHLGSWVSDFVRNEIRWSDEVYRIFGLTPG 171 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G ++ +H DR R +D + E R++ D + + Sbjct: 172 EWGGTEAAFMEAVHPEDRARVRQAIDESMRPNGPPYDIEHRIQRPDGSVRIVHQKGTVAF 231 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +++G LR G+ +DITE +++ + + D LT +PNR F RL + + + Sbjct: 232 DADGRPLRMAGVVHDITEMREAERRLQYLSHHDVLTELPNRTLFQIRLRQAISEAQAEKG 291 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ I +D+++ +N+ +G GD VL + RR+ L+ + LARL G+ F ++L Sbjct: 292 C-FALVHIGLDRFRSVNEGVGHHAGDQVLQQVARRLEACLRPGETLARLGGDEFAVLLAG 350 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++A + + + E E V S G A + + E+++ AE AM+ Sbjct: 351 AGDDAEVAAGVDRLLAPLQELFRVGEDEFYVPGSAGVALYPHDCSSPGELMQRAEAAMHR 410 Query: 684 AKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEA 740 AK S ++ RV ++ L AV+ E YL Y P + I+GLEA Sbjct: 411 AKQEESTRLAYYSAEMNQRARARVALESRLRRAVDRMEGFYLDYQPRVETATGRIIGLEA 470 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W + S + F+ + E+ +I + +++ R +WR PP+ + +N+ Sbjct: 471 LLRWREGEGPVHSPATFVPVLEQTGLIMELGEWIVGEACRQARAWRQAGL-PPVQLAVNL 529 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 A+ D + ++ + + P ++L +ES++M LG+ R +G+ + + Sbjct: 530 AAPQFRDPAMPGIIEGALGEAGLPPGNLELEVTESMLMREVTSVIDTLGQFRDMGVRVAM 589 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P D +K + S + E AI+R+I+ +A N+ +A+ + Sbjct: 590 DDFGTGYSSLAYLRRFPIDVLKIDRSFVNDLYADESGAAIIRTILSLADNLGMESVAEGV 649 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R GC +Q + P ++L+ Sbjct: 650 ERPEQHAFLCREGCHAVQGYLFSRPASPEVCARMLRR 686 Score = 69.2 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 4/125 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDN- 463 + + + V+ D + +LGLA + + W + + + Sbjct: 2 REQLLESLAEGVFSVDAEGNFTFLNRAACRLLGLADEQVALRANHQEWALHSGPDSQPLP 61 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + +D + E R R +D +++ P+ G I + D+ E+ Sbjct: 62 PRSSPIDQVLRTGCVLKGCELRFRHSDGHPVPVLVNAAPLYGEEGRIAGAVVSFQDVRER 121 Query: 523 KKSLE 527 + + E Sbjct: 122 QVARE 126 >gi|307634951|gb|ADI84765.2| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 708 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 148/622 (23%), Positives = 273/622 (43%), Gaps = 19/622 (3%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 + + T +D A I ++ I+++L + A Sbjct: 88 LVMTSLDDTGAIDEAYEAGASDFLAKPIDWVLLPRRIRYLLRAKLAFDELHKSRTMLYNA 147 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + W++D+ + T + + I G+ R + +H DR + + Sbjct: 148 QRIARLGNWEFDLETNVFTCSEESCRIFGIRDHRQGKSHRALMRRVHPEDRVTVKKAIFQ 207 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 G + R+ D + +S +G R +G +DITE+ + E I Sbjct: 208 AFRTGVG-YCMDHRIVLDDGVERIVSQHAELLSADDGRTSRLVGTVHDITERTLAEERIR 266 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D LT +PNR F +R+ L + + V+ +D+D +KK+ND LG GD Sbjct: 267 YLAHHDTLTALPNRFQFEERMEQALAFAQRN-GFMMAVLFLDLDHFKKVNDTLGHHAGDR 325 Query: 591 VLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMR 638 +L R+ + L+ D ++R+ G+ F I+L + A + + Sbjct: 326 LLQEAAGRLMKCLRRSDTLTHASREDASPFISRMGGDEFTILLTDLAHPQDAARVSQRII 385 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 +++ + E+ V ASIG + + S ++L+NA+ AMYHAK G N + + S Sbjct: 386 TALSKRYVIGGHEVFVGASIGISLFPSDGEDCDQLLRNADTAMYHAKELGRNTYQYYSGS 445 Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +R+ ++ +L A++ +E L Y P + +VG+EAL+ W P + + Sbjct: 446 MNAMALERLTLENNLRWALKRNEFRLCYQPQLDAASGRVVGMEALLSWHRPGCDVVPPDD 505 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I +I ++L ++W + PP+ + +N++S L E ++ Sbjct: 506 FIPLAEETGLIASIGEWVLWNACAQAVTWLHEGL-PPVRVAVNLSSLQFRSRRLAELVRK 564 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T PS ++L +E V M N E + +++ L+K+G+ ++DDFGT S LS L Sbjct: 565 VLRATGLPPSHLELEITEGVFMSNEEDAAVVIRDLKKMGVRFSVDDFGTGYSSLSRLSRF 624 Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + + A + +II MA+N+ +IA+ + L GC Sbjct: 625 PLDALKIDRSFVRDISADPAAAGLTAAIIAMARNLGLNVIAEGVETHEQFAFLRANGCAE 684 Query: 935 IQDSHVASPLGFNSILKLLKER 956 +Q + PL ++ L+ R Sbjct: 685 VQGFLFSQPLNPDAAAAFLRAR 706 >gi|313201431|ref|YP_004040089.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312440747|gb|ADQ84853.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 679 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 151/577 (26%), Positives = 278/577 (48%), Gaps = 13/577 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445 IQ + Q + R S + ++ + P +A I G + + Sbjct: 105 IQDITQRKLNEQALQEAERRYRNIFENSIEGIFQTSQDGQYINANPALARIYGYESPEEL 164 Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + N ++ R F T++ + R + +E ++ D W+ R + Sbjct: 165 IQSLNNIAQQLYVQPESRQAFLTLMQ--LEDR--VVNFESQIYRRDGSTIWISENARAVR 220 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 N G +L + G DITE+K I A D+LTG+PNR DRL + + + Sbjct: 221 NDEGKLLYFEGTVEDITERKSYNALIEYQATHDDLTGLPNRTLMQDRLLQAISYADRTAS 280 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + V+ +D+DK+K IND +G +GD +L+++ RR+ ++ D +AR G+ F ++L + Sbjct: 281 -KLAVVFVDLDKFKDINDSMGHFIGDQLLIAMARRLESCIRDSDTVARPGGDEFVLLLSN 339 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++ + + P ++ ++ TVT+SIG + + TS +LKNA+ AMY Sbjct: 340 IHGMDALSQTLQRVLALTSEPCSIEGKDFTVTSSIGISLYPDDGKTSETLLKNADTAMYK 399 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + + +R+ ++ + A+ ++E +L Y P + L + I G+EAL Sbjct: 400 AKQEGKNNFQFYTRELNSILVERLEMEYQMRNALGHNEFHLHYQPKLNLRTQRITGVEAL 459 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W +P+ G IS + F+ IAEE +I+ I ++LE+ + Q + + + +N++ Sbjct: 460 IRWHNPRQGLISPNRFIPIAEESSLIEQIGSWVLEKACME-SIALSQLSGYDVPVSVNVS 518 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + L + ++ +T PS ++L +E + + +L L+ +GI L +D Sbjct: 519 PRQFQQSNLVGNISRVLQETGLKPSLLELEITEGTLADTSPQFIKVLNDLKGLGIKLAID 578 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L YL + P D +K + S + G AIL++I+ + N+ ++A+ + Sbjct: 579 DFGTGYSSLGYLKHFPIDNLKIDRSFVMGLESDTANQAILKAIVALGHNLGINLVAEGVE 638 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E L +GCD +Q + PL F+ KLL + Sbjct: 639 TERQRDFLLSIGCDEMQGFLFSQPLPFDQAGKLLLAQ 675 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 25/179 (13%) Query: 427 RVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + + + G + R ++ DR R +D + RR R + E+R+ Sbjct: 16 MLFISDGCFDLTGYRPDELLHNGRTSFEELTLPEDRARIRNTVDDALS-RRERFEIEYRI 74 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 D Q W+ R + N G + G DIT++K E L A + R Sbjct: 75 MTIDGQIRWVNERGTGIFNPQGQVEALEGFIQDITQRK-LNEQALQEAERRY------RN 127 Query: 546 SFLDRLTTILDLSATDD--NLRPTVMVIDIDKYKKINDVLGIAVGDDV---LVSLTRRI 599 F + + I S N P + I G +++ L ++ +++ Sbjct: 128 IFENSIEGIFQTSQDGQYINANPALARI-----------YGYESPEELIQSLNNIAQQL 175 >gi|89097342|ref|ZP_01170232.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor [Bacillus sp. NRRL B-14911] gi|89088165|gb|EAR67276.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor [Bacillus sp. NRRL B-14911] Length = 1106 Score = 564 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 148/577 (25%), Positives = 269/577 (46%), Gaps = 11/577 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLAS 442 + + V + + E+ S VW D +V + I I G Sbjct: 383 VGISRDVTEQREIEDRLAENTEQFKSFYNNSDVGVWSLDPAGKKVLICSNAILAIYGYTK 442 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++ R W IH +D + ++ ++R+ D + W+ + P+ Sbjct: 443 KELYRDPRIWNRSIHPDDVQEVINNQNKISEGNI--IRQQYRIITRDGKLKWVSDHLIPI 500 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G ++R GI DIT QK++ + A+ D +TG+PNR+ F L + + + Sbjct: 501 YDEKGRLIRLDGIVADITAQKQAEAQMEFLAYHDYMTGLPNRRLFDQTLNGLFE---GKN 557 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + +M +D+D++K IND LG +GD VL RI ++ D +R+ G+ F II Sbjct: 558 PEKFAIMYLDLDRFKHINDTLGHPIGDQVLKEAADRITASIRKGDFASRMGGDEFAIIAR 617 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + A + +I P + E+ +TASIG + + ++ T E+ +NA+ A+Y Sbjct: 618 NVESIEDASRLAAKITGTIQKPYEIEGYELFITASIGISLYPNNGSTPEELARNADAALY 677 Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK G + + + S ++ D+ A+++ + Y+ + P I ++ G EA Sbjct: 678 HAKQMGKSSHQVYNASMNIESFKKYCLERDMRNALKDDQFYVEFQPKIEPRTHKLAGAEA 737 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W+HP WG +S EF+ +AEE +I I +++E + + W+ + + I IN+ Sbjct: 738 LLRWNHPDWGIVSPMEFIPVAEESGLIVEIGDWVIENVIAKMEEWQK-GGLSLVPISINV 796 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + N L E + L K SP ++L +ES ++ ++ L +L ++ I L+L Sbjct: 797 SGQRFYKNNLAEMIGDLCQKHGISPKLLELELTESSLIHYSDQVLQELEKLGQLKIKLSL 856 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L++L F+T+K + S + I S+I MA + ++A+ + Sbjct: 857 DDFGTGFSSLTHLRKFRFNTLKIDKSFTKNIISNLEDATITSSLIDMAHGLNMKVVAEGV 916 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L + GCD IQ + P+ LKE Sbjct: 917 EEFEQLDFLKKKGCDEIQGFLFSRPVSGIVFRDFLKE 953 Score = 115 bits (287), Expect = 6e-23, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 1/145 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F + + + + + ER +LA + WD+ D + + + G++ Sbjct: 255 FGIAKDITELAEKERKLQKAEERLNLAQKTANFGYWDYYFKEDSAYWSEHMYEMFGVSKD 314 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + +IH D F + + + E+R+ D Q + + + Sbjct: 315 EFIPSFDYYKDFIHPEDLAPFLKNYHASLEEKT-PADLEYRIIRKDGQVRRLHHQSTLIL 373 Query: 504 NSNGDILRYIGIANDITEQKKSLEG 528 + +G R +GI+ D+TEQ++ + Sbjct: 374 DGDGCPERAVGISRDVTEQREIEDR 398 Score = 59.2 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 5/116 (4%) Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + D+ + D + G ++ + R + P++ D T + + Sbjct: 37 NTSDLAYILDKEGQILKVNEAAVKATGFSAEEI--QKRGFFPFVCKEDLPKAETSFQAVL 94 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + FR+ D + P+ N + IGI+ DIT ++ + Sbjct: 95 QGSTQT--HIFRINRRDGGLILLNSVAIPIIQEN-QTIGIIGISKDITAEENLKQK 147 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 49/179 (27%), Gaps = 15/179 (8%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + + IIQ G++ I I A Q + + Sbjct: 111 GLILLNSVAIPIIQENQTIGIIGISKDIT--------AEENLKQKLSISEQMYRSLFDNH 162 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D V+ D+ D + + MHG ++ ++ + Sbjct: 163 PDAVYSLDLNGDVTAFNDSLVRLFHYDPD-MHG--ISFRQFVAPESMSLVMCMFKLAAKG 219 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + I P+ ++ I GIA DITE E L A Sbjct: 220 KPQNYNMT--GINRSGEKFDANITNIPII-TDNQITGVFGIAKDITEL-AEKERKLQKA 274 >gi|224588186|gb|ACN58810.1| GGDEF family protein [uncultured bacterium BLR9] Length = 765 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 147/642 (22%), Positives = 291/642 (45%), Gaps = 11/642 (1%) Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 +++ G++ A P L+ + + + L+ L G + Sbjct: 120 VMVLDLGLPDAQGLEAVRAARACTPNIPLVVLTGLDDGHLASLALEEGAQDYLLKGEINA 179 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + +++ + + +F++ E + + D V D+ + + Sbjct: 180 RGLR---RALRYAIDRKAIEEKLFAEQESARVTLNSIADAVISADLSGNITFLNSVAEKL 236 Query: 438 LGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWM 495 G G + L + R+ + ++ +R + + D + Sbjct: 237 TGWQQNEALGRPIADILKVVDEITREPRGSTVERPNQLHRSTKAPSNSILVRRDGSELPI 296 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 P+ + G I + + +D++ + + A D LT +PNR+ DRL + Sbjct: 297 DESRAPILDRQGQIAGTVTVLHDVSVTRAMELKMAHLAQHDFLTDLPNRRVLDDRLRQAI 356 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 L+ + V+ +DID++K IND LG +GD L S+ R+ ++ D +AR G+ Sbjct: 357 SLARRQGK-QLAVLFVDIDRFKHINDSLGHGMGDKALQSMAERLTTCVRASDTVARQGGD 415 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L + A A + ++A+P + E+ ++ASIG ++ + + ++K Sbjct: 416 EFVILLAEVTTADDAAIVAKKILSAVALPHRIGRHELQISASIGISTCPNDADDAETLIK 475 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A++AMY AK +G N+ + FR ++ R ++ L LA+E E L Y P + L Sbjct: 476 HADIAMYQAKEKGRNNYQFFRADMNERVLQRQSLESSLRLALERQEFLLHYQPKMNLETG 535 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G+EALI+W HP+ G + + F+ +AE+ +++ I ++L+ R + W P Sbjct: 536 HITGMEALIRWRHPELGLVPPASFIGVAEDCGLMQPIGRWVLQEACRQVKEWMVAGLN-P 594 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N+++ + +G+ + + +T P ++L +E+V+M E + +L L+ Sbjct: 595 VPVAVNVSAVEFRRKHFFDGVISTLRETDLDPRYLELELTETVLMKEAEPTIAVLHALKS 654 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIET 911 G+ L +DDFGT S LSYL +P DT+K + S +T T AI+ +II M K++ Sbjct: 655 AGVKLAIDDFGTGYSSLSYLTRLPVDTLKIDRSFVTDVTTRTDNAAIVSAIIGMGKSLNL 714 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + + + L C Q + + P+ ++ +LL Sbjct: 715 NVIAEGVETQEQLALLRSHCCAEGQGYYFSRPVSVPAVAELL 756 >gi|119476185|ref|ZP_01616537.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [marine gamma proteobacterium HTCC2143] gi|119450812|gb|EAW32046.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [marine gamma proteobacterium HTCC2143] Length = 799 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 165/655 (25%), Positives = 300/655 (45%), Gaps = 21/655 (3%) Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365 ++ +A + ++ R + + I N Sbjct: 149 PLQALYLGIIACLSFLGFAIALWLANVSSNRLSQRLLSLETTAHNIISNG--------NY 200 Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 ++ V + + F + + E+ L S ++ DI Sbjct: 201 SLRAQKVENDTISNVTTNFNQMLDFFQQQDTQ--LRDSEEKFRLINETSKVGIFQLDING 258 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 V +++ I GL + NWL IH DR + + L R+ Sbjct: 259 TCVYANTELSLITGLPVNEILES--NWLTAIHPEDRSTVEEQWQVMLDNNQ-SLDLNCRL 315 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 + Q ++ +R + S+G ++ YIG ND++E K + A+ D LTG+ NR+ Sbjct: 316 KTP--QTKFIAAYVRLLRRSDGRLIGYIGAINDVSEIKNAQTQFEEMAYYDMLTGLANRR 373 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F +RL ++ + + ++++D+D++K +ND +G GD +L + R+ + ++ Sbjct: 374 LFRNRLEHVVSNLKKEQS-SLGLILVDLDRFKSVNDAMGHDAGDKLLKIVAGRLQQCVRA 432 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D +ARLS + F IIL NS A A + +I P+ + E E +TASIG A Sbjct: 433 SDTVARLSSDEFAIILPGIKNSRTTAHVAEKVLTAIQQPVLINETEQRLTASIGIAIAPQ 492 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLV 723 + + ++KNA+LA++HAK G N+ + F ++ DRV + DL AV+NS+ LV Sbjct: 493 NGTDAKTIIKNADLALFHAKDNGRNNYQFFTVEMNIQLIDRVALTHDLKQAVKNSDFTLV 552 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P I L +VG EALI+W+H G + +EF+ +AE+ +I + +++ + Sbjct: 553 YQPKICLKQGNLVGFEALIRWNHKIRGAVGPTEFIPVAEQTGLIIPLGRWVITTACEQLR 612 Query: 784 SWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + D+ + + +N+++ D L + ++ I+ P + ++ +ESV+M N + Sbjct: 613 TMYDEEIVNDSVSMAVNLSAHQFQDEHLVDFIRDRINTFDIKPGQFEIELTESVLMENFD 672 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 + L LR++GI +++DDFGT S L YL +P +TVK + S +T + + I Sbjct: 673 NAIEKLEALRQLGIQISIDDFGTGYSSLGYLKRLPVNTVKVDRSFVTDIPNDKSDMEITS 732 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++I MA N+ T++A+ + E ++ L GCDY Q + PL + + Sbjct: 733 AVIAMAHNLNYTVVAEGVETEQQLQFLEHSGCDYGQGYFFSKPLPDHELELFCAN 787 >gi|17227715|ref|NP_484263.1| hypothetical protein all0219 [Nostoc sp. PCC 7120] gi|17135197|dbj|BAB77743.1| all0219 [Nostoc sp. PCC 7120] Length = 585 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 154/573 (26%), Positives = 268/573 (46%), Gaps = 14/573 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + S DI+ ++ +P I ILG + G Sbjct: 10 DGNQAEAALRESEAKFRSLIQNSSDIIGIFEPDGTIRYESPSIERILGYKPEELVGKNA- 68 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 +IH +D + + + + E R R D + ++ + + + Sbjct: 69 -FDFIHPDDITSNSQSFNYLIQNLGATVLVESRFRRKDGSWCFLESTGSNLL-AEPSVKG 126 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + DIT++K + E ++ +A D LTG+PNR F+DRL ++ + + V+ + Sbjct: 127 IVINSRDITDRKLAEERLVHDALHDVLTGLPNRVLFIDRLRRAVEYAKRYSDHLFAVLFL 186 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG +GD +LV + +R+ E L+ DI AR G+ F I+L + Sbjct: 187 DLDRFKFINDSLGHTIGDQLLVIIAQRLIECLRPTDIAARFGGDEFIILLEGIQDISDTV 246 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 +++ + +P+ L EI TASIG + + ++L+NA++AMY AK RG Sbjct: 247 RVVERIQEKLLVPVVLSGHEIFTTASIGISLSATGYEQPEDLLRNADIAMYRAKARGKAC 306 Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 E F R+ ++ DL A+E E + Y PI+ L I G EAL++W HP+ Sbjct: 307 YEIFNSDMHVQIVERLQLENDLRRAIERHEFLVYYQPIVSLTTGRITGFEALVRWLHPEQ 366 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-------ANMPPIFILINIAS 802 G + EFM IA+E +I I+ ++L R W++Q + P+ I IN+ S Sbjct: 367 GIVFPEEFMPIAQETGLIIPIDAWVLREACRQTRQWQEQIPSLSTDLHKQPLSISINLCS 426 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 +L E + ++ T +KL +ESV+M N E + +L +LR +GI L +DD Sbjct: 427 SRFSQKKLLEDINQVLQDTGLDAQSLKLEITESVIMENGENATTMLNQLRNLGIELAIDD 486 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L L P + +K + S + G + I+ +I+ ++ + + A+ + Sbjct: 487 FGTGYSSLGRLHNFPINGLKIDQSFVSGRGVEAGNLHIVETIVTLSSKLGVDVTAEGVET 546 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ L + C+Y Q + PL +S L+ Sbjct: 547 PAQLQRLRELKCEYGQGYFFSEPLDSDSAKALI 579 >gi|307155019|ref|YP_003890403.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306985247|gb|ADN17128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 1342 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 157/619 (25%), Positives = 288/619 (46%), Gaps = 18/619 (2%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-----GIFSDGE 405 +G + I ++N L LI++ + I + + I E Sbjct: 718 LMGQILGIPIIVNNYSEIEILQPSGKLIIVRMRLVKIIWQEKNAFLASLVDVTDIQQAQE 777 Query: 406 RQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + + A S V D P I G + G L + Sbjct: 778 QLKILYQATEQSPVSVVITDAEGTIEYVNPKFEKITGYQRAEVIGQNPRILKS-GETTTE 836 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ I + + EF + + + W I P+ N+ G I ++ + DITE+ Sbjct: 837 EYKQIWKTITSGQ--EWHGEFHNKKKNGELFWEAASISPIKNAEGIITHFVAVKEDITER 894 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K + A D LTG+PNR +DRL + + R VM ID+D +K +ND Sbjct: 895 KAQQTTLTYQANYDALTGLPNRFLAIDRLKQAILQADRQKK-RVAVMFIDLDHFKDVNDT 953 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG GD +L +++R+ + L+ D +ARL G+ F IIL + + A + S+ Sbjct: 954 LGHEYGDLLLQKVSQRLKQCLRKSDTVARLGGDEFLIILPNLRETHHCKLIASKILSSLE 1013 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700 P NLL E ++ASIG + S +++NA+ AMY K G N + + ++ Sbjct: 1014 KPFNLLTEEAFISASIGITLYPDDGNDVSVLMRNADAAMYLGKRGGRNDFKFYTMGMNEE 1073 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ I++ L A++ +E YLVY PII L + ++G EAL++W++P+ G +S +F+ I Sbjct: 1074 AQSRLRIEKLLRYALKKNEFYLVYQPIIDLRFQTVIGAEALLRWNNPELGRVSPDQFISI 1133 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I + +++ + +++++W+ Q PI++ +N++ + +++L E + I+ Sbjct: 1134 AEETGLISELGAWVISQACQEVVNWQTQG--SPIWVAVNLSPRQFRESKLLEIISNAITL 1191 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + ++L +E +++ + S+ ++ +L ++ L++DDFGT S LSYL PF+ Sbjct: 1192 NGITNHYLELEITEKLLLEDFPGSKGIIEQLHEMDFRLSIDDFGTGYSALSYLIKFPFNR 1251 Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + + A++++II M ++ +IA+ + L GCDY Q Sbjct: 1252 LKIDRSFIADIPHNQEVLALVKTIIAMGHGLKLQVIAEGVETTEQANILEAEGCDYAQGY 1311 Query: 939 HVASPLGFNSILKLLKERF 957 + PL + L+ Sbjct: 1312 FFSRPLLSEEFRRYLQSHQ 1330 Score = 92.3 bits (228), Expect = 4e-16, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 9/176 (5%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + LV I I I +V+ V + + + + ++ D Sbjct: 395 VSANLVKNEANIAIYIMISVM-DVSQQQGTEESLQKLLRLYTNLTQAAPVGIFRADESGK 453 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + I G++ G W Y+H +DR + + + E+R R Sbjct: 454 WLYANEKALLISGISLDKAIG--MGWANYVHNDDRARVFNEWIKSIQTQT-SWRTEYRYR 510 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-----GILCNAFQDN 537 +D W++++ P + G I+ Y+G DITE+K + E A D Sbjct: 511 HSDGNNTWVLVQAIPEMDEQGKIVGYLGTLTDITERKNAEEATNKINAQMQAIFDA 566 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 53/184 (28%), Gaps = 23/184 (12%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 G ++I L + + +V + + V++ + + ER Sbjct: 622 ALVSGEIVSIEYFLIIALQKRFFDARIVRLSPVETIAVVRDISDRKQTELALRESEERLK 681 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + + + + D+ + P + G + G I + Sbjct: 682 TIISTNPNGLLILDLQGKVLFVNPAAEILFGRKQEDLMGQILG----------------I 725 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 V E + + + +R+ + + ++ D+T+ +++ E Sbjct: 726 PIIVNNYS-----EIEILQPSGKLIIVRMRLVKIIWQEKNA--FLASLVDVTDIQQAQEQ 778 Query: 529 ILCN 532 + Sbjct: 779 LKIL 782 Score = 39.2 bits (90), Expect = 3.7, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRT 466 A+ S + D+ + + + G +L + I+ T Sbjct: 311 EFAITSSISAIAIGDLQGNLTYVNQAFLEMWRYDNDDEVLGKP--FLNFWQID--QQGET 366 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 ++ + RG+ E + D + + N + + D+++Q+ + Sbjct: 367 LIQTIRT--RGQWIGELIAKKKDKSLFKAQVSANLVKNEANIAIYIMISVMDVSQQQGTE 424 Query: 527 EGILCN 532 E + Sbjct: 425 ESLQKL 430 >gi|313682755|ref|YP_004060493.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313155615|gb|ADR34293.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 923 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 144/600 (24%), Positives = 278/600 (46%), Gaps = 15/600 (2%) Query: 365 DIIQPALVGGLVLIVILIG---FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 I + G++LI +G F + + LA + ER S +W+ Sbjct: 323 RFIAMSATFGMILIGAFLGSVFFLLRRTDLAIRTQQSNLKESEERFEQLAEQSRTFIWEV 382 Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + + +LG S + G + + + +++F+ + + + Sbjct: 383 DSKGKLTYVSDTVEKVLGYRSDELVGK-KYFYDFHPPEGKESFKKTVCEVFEGKESFENF 441 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 + + W+ M +++G L Y G DI+E+K S E I +F D LT + Sbjct: 442 TNLAVDREGETVWLTTNGIAMVSNDGTFLGYRGSNTDISERKYSEEKINGLSFFDQLTAL 501 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR +DRL + + + ++ ID+D +K +ND LG +GD +L + +R+ Sbjct: 502 PNRTLLMDRLKQAMAAGSRNGKY-GALLFIDLDNFKTLNDTLGHEIGDSLLKLVAQRLSG 560 Query: 602 LLKFPDILARLSGNRFGIIL----ISENNSLKI-ADFAIAMRKSIAMPINLLEREITVTA 656 ++ D ++R G+ F ++L +SE ++ A + S+ P L +A Sbjct: 561 CVREGDTVSRFGGDEFVVVLGELSVSETDAATAGELVAEKILGSLNQPYFLGGINHRSSA 620 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714 SIG + ++ +++K A+LAMY +K G N + F + + + ++ DL + Sbjct: 621 SIGITLFKGDDTSTDDLMKQADLAMYKSKDAGRNGLSFFDPNMEHTLKERALLEHDLRIG 680 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 +E + L Y + + I G EAL++W+HPK G IS EF+ +AEE+ +I + ++ Sbjct: 681 IEEKQFILYYQAQV-VNHGHIAGAEALVRWEHPKRGIISPMEFIPVAEEIGLIIPLGEWI 739 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 ++ + +W M I I +N++++ N+ E + +++ + +P ++KL +E Sbjct: 740 MKTACAQLAAWSHIPEMADITIAVNVSARQFSQNDFVEQVLSILHENGANPKKLKLELTE 799 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--ST 892 S+ + + E + L+ G+S +LDDFGT S LSYL +P D +K + S + Sbjct: 800 SLFLQDVEEVIEKMVALKNEGVSFSLDDFGTGYSSLSYLKRLPLDQLKIDKSFVRDLLID 859 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 I +S I +A+++ ++IA+ + + L+ +GC Q + P+ + L Sbjct: 860 PNDAIICKSTIALAESMGLSVIAEGVETQEQHHALSEIGCFSYQGYWFSRPVPLSEFEAL 919 >gi|304309898|ref|YP_003809496.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1] gi|301795631|emb|CBL43830.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1] Length = 993 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 167/792 (21%), Positives = 317/792 (40%), Gaps = 19/792 (2%) Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT--FAMAWVVLGYIS 233 W P + G+ ++ AI + + + + L ++ Sbjct: 197 WLPTLFTSNAGQTLFKLLFEYGITAINAITALVLLRRMANKHDPASRESGLNITALFTVT 256 Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL--HWNRWHAKVGYITFSGIA 291 I + S I + + + + A Sbjct: 257 ILLILSQLCFSRYSNFNDYLLILGHIYKALAYFVIYRTIFVSTVELPFDHLHASQEQLKA 316 Query: 292 CIAILF-CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350 ++ L + + ++ + H + + Sbjct: 317 TLSALPDLLFEVDQDGRYVDFHTSQDDLLFVSPKDFLGHTYDEVMPPAISAIIRKALQEA 376 Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE--RQS 408 + + + + V + + ++ T S+ I ++ + S Sbjct: 377 SVQGISRGHQYAIDLPMGTRWFEASVSLKSTDSSGNQRFIMLTRDISERIEANMRVRQLS 436 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTI 467 AV S + DI P +T+ G ++ + G R + + Sbjct: 437 HAVEQSPLPIIITDINGHIEYANPAFSTVSGYSTDEVIGKNPRELQSKRTQESV--YVEL 494 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + + + EF R + + + I P+ +G + Y+GI D+TE+K++ Sbjct: 495 WQTLLKGQT--WKGEFVNRRKNGEHYVARAIISPVRRPDGSVSHYVGITEDVTEKKRTEA 552 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A D LTG+ NR +D + L L+ +L +M +D+D++K IND LG +V Sbjct: 553 HIHKLAHYDPLTGLANRVLLVDHFDSALALAQRH-SLPLALMFMDLDRFKIINDTLGHSV 611 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD+VL+ + ++ ++ D +AR G+ F I N+ + + A + +SI+ P Sbjct: 612 GDEVLIHVAKQFKTSIRDEDTVARRGGDEFVFIFPGINS-QQARNVAQKLSRSISEPFRS 670 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705 +E+ +T+SIG A + + + A++AMY AK G N + + Sbjct: 671 EHQELNITSSIGIAMYPDDGGDFETLARKADVAMYRAKQNGRNQFAFYTQEMQIHSLRIL 730 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + L A+E ++LYLVY P I L EI G+EAL++W HP+WG IS EF+ +AEE Sbjct: 731 QLGNGLRHAIERNQLYLVYQPQICLERSEICGVEALVRWRHPEWGEISPGEFIPVAEETG 790 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 I I ++L+ + W + P I + IN+++ ++ L + +QA + + Sbjct: 791 AISQIGEWVLQTALQQAAEWVKRGL-PAIKVAINLSALQFRNSNLPDRIQASLEEYQVPA 849 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S+++L +E M +P + +L L +GI + +DDFGT S L+YL +K + Sbjct: 850 SQVELELTEGTAMEDPLGAIEMLKNLHALGIQIAIDDFGTGYSSLNYLKKFQVSKLKIDQ 909 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + ++ AI+ +II MA+++ IA+ + + L GCD +Q + + P Sbjct: 910 SFVRDISVDQEDRAIVTTIIHMAESLGFRTIAEGVETHEQLTFLREHGCDEVQGYYFSKP 969 Query: 944 LGFNSILKLLKE 955 L L++ Sbjct: 970 LLPAQFEFFLEQ 981 >gi|291614482|ref|YP_003524639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291584594|gb|ADE12252.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 1011 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 145/569 (25%), Positives = 262/569 (46%), Gaps = 18/569 (3%) Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 ++ +A S + + D V + I G + + G R Sbjct: 448 ASMHAKQQLRIAATAFESQEGMLVTDAVGAILRVNQAFTRITGYTADEVIGKNPRILNSG 507 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D ++ + + R G + E R + + + I + ++ G+++ Y+ Sbjct: 508 RH--DAYFYKEMWERIK--RTGEWEGEIWNRRKNGDVYPEHLTITAVKDAGGNVVNYVAT 563 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DIT K S E I AF D LT +PNR+ DRL L ++ ID+D Sbjct: 564 LMDITASKASEEEIRNLAFFDPLTRLPNRRLLQDRLQQALASCGRSGK-SGAILFIDLDN 622 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKI 630 +K +ND LG +GD +L + R+ ++ D +AR+ G+ F ++L ++ + + Sbjct: 623 FKNLNDTLGHDIGDLLLEKVAIRLSSCVREGDTVARIGGDEFVVMLEDLSDNILDAAEQT 682 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + S+ +P L + SIG + + + E+LK A++AMY AK G N Sbjct: 683 ESVGSKILASLNVPYQLGIHTYDNSPSIGATLFNDNHNSIDELLKQADIAMYQAKKAGRN 742 Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + F +S R+ ++ +L A+E + L Y + +G EAL++W HP+ Sbjct: 743 TMRFFDPRMQQSLSARLALELELRKAIEKDQFQLYYQIQVD-ETHRPLGAEALLRWMHPE 801 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G ++ +EF+ +AEE +I I ++LE + +W + + IN+++K Sbjct: 802 HGLMAPAEFIPMAEETGLIVPIGWWVLETACTQLKAWEKDPLTRNLVLSINVSAKQFHQP 861 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + +QA + P+ +KL +ES+++ N + + + L+K G+ +LDDFGT S Sbjct: 862 DFVDQVQAAVDHYGIDPALLKLELTESILLENVDTTIKRMSALKKTGVGFSLDDFGTGYS 921 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L YL +P D +K + S M T +AI+ +II MA++++ +IA+ + E + Sbjct: 922 SLQYLKRLPLDQLKIDQSFMQEITSDSSDMAIVSTIIAMAQSMQMGVIAEGVETEEQRQL 981 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R GC++ Q + P+ KLL Sbjct: 982 LLRKGCNHFQGYLFSKPVPVEQFEKLLHR 1010 Score = 66.1 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 5/150 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 +++H S + +R + + D + V +L + ++ Sbjct: 316 IVRHAQRLQATSNDLQESEKRLRTIFETEPECIKVVDRNGELVEMNQAGLAML--EAATL 373 Query: 446 H-GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + Y+ D+ F + + L EF++ H + PM + Sbjct: 374 EEARQKKLIDYVAPEDQAAFLALHRRVMNGESAVL--EFKITGLKGTLHHLETHATPMPD 431 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534 +NG+I +GI D+T + + + A Sbjct: 432 ANGNISLLLGITRDVTASMHAKQQLRIAAT 461 >gi|226939063|ref|YP_002794134.1| Sensory box/GGDEF family protein [Laribacter hongkongensis HLHK9] gi|226713987|gb|ACO73125.1| Sensory box/GGDEF family protein [Laribacter hongkongensis HLHK9] Length = 1041 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 154/580 (26%), Positives = 281/580 (48%), Gaps = 11/580 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGS 444 + + V + + + R LA+ SG +++ ++ +T T I L + Sbjct: 442 IARDVSELKQAAAALANSDARLRLALQASGTGLYELELATGAITITGAIRQRLDIRVPEQ 501 Query: 445 MHGPIRNWLPYIHINDRDNFRTILD--SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 P WL ++H +D+ R + + RL+ FRV + W+ R + + Sbjct: 502 QPIPAALWLAWVHPDDQARIRQAFEHWQQEPHAPDRLETSFRVCPPGGRMRWVHARGQYI 561 Query: 503 SNSNGDIL-RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + R +G ND+T+QK++ E I A D LTG+ NR + RL + Sbjct: 562 AAAEDTAAARLVGTVNDVTDQKENEEQIERYAHFDALTGLANRHALYRRLGQAITSVHQH 621 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + V+ +D+DK+K IND LG AVGD VL + R+ + DILARL G+ F ++L Sbjct: 622 QH-PLAVLFVDLDKFKTINDTLGHAVGDVVLREVAGRLSDFAGPDDILARLGGDEFLLVL 680 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + ++ A + ++++P+ + RE+ T +IG + + + ++++NA++AM Sbjct: 681 PG-ADERAASEVAACILTAMSVPVRVDGRELPTTPTIGVSLYPRDGEEADDLIRNADIAM 739 Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK RG N + + + +R+ ++ +L A E+ L Y P I + D +VG E Sbjct: 740 YQAKARGRNTFQLYTPDMNAAAAERLQLQGELRNAHLRGEIMLHYQPQIDVTDGHVVGCE 799 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W HP G +S F+ +AEE +I + + + R + W+ PP+ + +N Sbjct: 800 ALMRWKHPTLGMVSPGRFIPLAEESGLIITLGNWAIREACRQAMVWQRAGL-PPLTVAVN 858 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ + + ++ T P ++L +ES+VM + E+ L L+ +G+ L+ Sbjct: 859 LSGCQFQQSNFTAVVADALADTSLPPQYLELELTESIVMHDVEQVIATLTELKALGVQLS 918 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P D +K + + + AI+R+II + K + +IA+ Sbjct: 919 IDDFGTGYSSLNYLKRFPVDLLKIDQGFVRDVETDPSDAAIVRAIIALGKILNLRLIAEG 978 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + + + L G D+IQ + + PL + L +R Sbjct: 979 VETQGQLDYLHAAGVDFIQGYYFSRPLPAEDMATYLAQRL 1018 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 19/212 (8%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG---I 400 +L W G +AI ++ + +LI + L G + + Sbjct: 270 RLLTLTWLSGQSLAIGISRSYSVLLKRWYQDMRAKALLISLLLCGSGLLLGVLLRQLRRV 329 Query: 401 FSDGERQSLA----VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + L G I+W D+ LG ++G L I Sbjct: 330 EHSERQLRLTQYSVDHGVDLILWV-DLNSRVRYANLRAQKQLGWHPHELYGRP---LSRI 385 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + L + R + E + Q + + ++++ GD L + IA Sbjct: 386 APSLGGAAWMSLQQRIA-RGDNVTLETSFSCRNGQTLAVEVTASVLTHTEGDGLLCL-IA 443 Query: 517 NDITEQKK------SLEGILCNAFQDNLTGIP 542 D++E K+ + + L A Q + TG+ Sbjct: 444 RDVSELKQAAAALANSDARLRLALQASGTGLY 475 >gi|39997025|ref|NP_952976.1| sensory box/response regulator [Geobacter sulfurreducens PCA] gi|39983913|gb|AAR35303.1| sensory box/response regulator [Geobacter sulfurreducens PCA] Length = 660 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 148/622 (23%), Positives = 273/622 (43%), Gaps = 19/622 (3%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 + + T +D A I ++ I+++L + A Sbjct: 40 LVMTSLDDTGAIDEAYEAGASDFLAKPIDWVLLPRRIRYLLRAKLAFDELHKSRTMLYNA 99 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + W++D+ + T + + I G+ R + +H DR + + Sbjct: 100 QRIARLGNWEFDLETNVFTCSEESCRIFGIRDHRQGKSHRALMRRVHPEDRVTVKKAIFQ 159 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 G + R+ D + +S +G R +G +DITE+ + E I Sbjct: 160 AFRTGVG-YCMDHRIVLDDGVERIVSQHAELLSADDGRTSRLVGTVHDITERTLAEERIR 218 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D LT +PNR F +R+ L + + V+ +D+D +KK+ND LG GD Sbjct: 219 YLAHHDTLTALPNRFQFEERMEQALAFAQRN-GFMMAVLFLDLDHFKKVNDTLGHHAGDR 277 Query: 591 VLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMR 638 +L R+ + L+ D ++R+ G+ F I+L + A + + Sbjct: 278 LLQEAAGRLMKCLRRSDTLTHASREDASPFISRMGGDEFTILLTDLAHPQDAARVSQRII 337 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 +++ + E+ V ASIG + + S ++L+NA+ AMYHAK G N + + S Sbjct: 338 TALSKRYVIGGHEVFVGASIGISLFPSDGEDCDQLLRNADTAMYHAKELGRNTYQYYSGS 397 Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +R+ ++ +L A++ +E L Y P + +VG+EAL+ W P + + Sbjct: 398 MNAMALERLTLENNLRWALKRNEFRLCYQPQLDAASGRVVGMEALLSWHRPGCDVVPPDD 457 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I +I ++L ++W + PP+ + +N++S L E ++ Sbjct: 458 FIPLAEETGLIASIGEWVLWNACAQAVTWLHEGL-PPVRVAVNLSSLQFRSRRLAELVRK 516 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T PS ++L +E V M N E + +++ L+K+G+ ++DDFGT S LS L Sbjct: 517 VLRATGLPPSHLELEITEGVFMSNEEDAAVVIRDLKKMGVRFSVDDFGTGYSSLSRLSRF 576 Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + + A + +II MA+N+ +IA+ + L GC Sbjct: 577 PLDALKIDRSFVRDISADPAAAGLTAAIIAMARNLGLNVIAEGVETHEQFAFLRANGCAE 636 Query: 935 IQDSHVASPLGFNSILKLLKER 956 +Q + PL ++ L+ R Sbjct: 637 VQGFLFSQPLNPDAAAAFLRAR 658 >gi|83311376|ref|YP_421640.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82946217|dbj|BAE51081.1| Predicted signal transduction protein containing a membrane domain [Magnetospirillum magneticum AMB-1] Length = 831 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 160/619 (25%), Positives = 276/619 (44%), Gaps = 11/619 (1%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + + I A+ G +V + G +I A + Sbjct: 207 FPNGSVRGAVGVSVPMQPYQAMEGQAIRIQAISHGAFWLVGVAGILLIGRRSAGRLTEKA 266 Query: 400 IFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + R + + + D + P + G + G + H Sbjct: 267 LADEETRLAAHVFSNALEATLITDPKGRILRINPMFTELTGYGEAEVVGGNPRIIRSNH- 325 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D D + I + R GR Q E R D Q I + + G I +IG D Sbjct: 326 HDADFYAEIWQAIF--RDGRWQGEIWNRRKDGQVFVAWESIVAVYDEAGAIRYFIGSFRD 383 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITEQ ++ IL A D LT +PNR F DRL + + D + ++ +D+D +KK Sbjct: 384 ITEQVEAQRHILRLAHYDVLTDLPNRVLFQDRLERAVVHALRHDR-QAALLFLDLDGFKK 442 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND +G GDD+L + R+ ++ D +ARL G+ F +IL + + + A + Sbjct: 443 VNDTMGHRAGDDLLKEVAVRLRGCVRMTDTIARLGGDEFTVILDEISAANDASMVADKIL 502 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 S+ PI + R++ + SIG + + + E+LK+A+ AMY AK G + Sbjct: 503 ASLHAPIFIDGRDVFIGTSIGISLFPIDGTSGDELLKHADTAMYQAKAAGKGRFNFYSAE 562 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ L AVE + + Y P L + G EAL++W HP+ G IS + Sbjct: 563 MTKREEHRLELETALRQAVEEGQFQVHYQPQKNLATNRVSGFEALVRWQHPRLGMISPVD 622 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE+ +I I++F++ + R WRDQ I + +N++ + ++L E ++ Sbjct: 623 FIPLAEEMHLIDRIDMFVMRQACRKGRQWRDQGYD--ICMAVNLSGVNFSRDDLPEQVRQ 680 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +ES V+ R +L RLR +G+ L +DDFGT S LSYL + Sbjct: 681 VLEDTGFPAENLELEITESFVIDLEVDQREVLQRLRALGVKLAIDDFGTGYSSLSYLKRL 740 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + S + + + ++ SII +A ++ ++A+ I + L CD Sbjct: 741 PVNTLKIDRSFVRDIARDSRDMMLVSSIIGIAHSLGLKVVAEGIEERDQLAILLSQECDE 800 Query: 935 IQDSHVASPLGFNSILKLL 953 IQ +A P+ L Sbjct: 801 IQGYLIAKPMPAEQAGIFL 819 >gi|95929050|ref|ZP_01311795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95134951|gb|EAT16605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 766 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 146/585 (24%), Positives = 266/585 (45%), Gaps = 14/585 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 T ++ + R ++ + + ++ + + LG ++ Sbjct: 191 ITGAMALVQDITEKRKTDEVLRRFRFSIEQASEAIFWINDEGRFLFVNDQACHSLGYSAS 250 Query: 444 SMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + W I + + + + + E R + D + + + Sbjct: 251 ELE-SLHLW--DIDPDFPAERWAEQWERMKSDPKQVF--ETRHQRKDGRIFPVEVSASQC 305 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +N + ++ DIT +KK + + + D LTG+ NR DR+ + + Sbjct: 306 LFNNEE--NHVAFVRDITIRKKYEKELEHQSNHDALTGLANRVLLDDRIQQAIVHAERAQ 363 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 V ++D+D++K IND LG + GD VL+++ R+ + D L+RL G+ F I++ Sbjct: 364 R-NTAVFLLDLDRFKVINDSLGHSQGDAVLLAVAERLSACISPGDTLSRLGGDEFAIVMT 422 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 N+ A + + P L RE+ +T SIG + + S ++L++A+ AMY Sbjct: 423 HVNHPADARIMAQKILNAFEQPFPLGNRELRITTSIGASLYPRDGEQSEDLLRHADAAMY 482 Query: 683 HAKHRGG--NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +GG S + + + ++ DL A++ L Y P +++ +I G EA Sbjct: 483 QAKKQGGNGFQFCSEEMDTRAHKALELEGDLRQALQLGSFVLHYQPKVKIASGKIDGCEA 542 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W+HP G IS +F+ +AEE +I A+ ++L R +W+ Q PPI I +N+ Sbjct: 543 LVRWNHPDKGMISPDDFIPLAEETGLIIALGEWVLREACRQFKAWQAQGL-PPIKIAVNL 601 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +++ L ++ E +Q ++ + P + L +ES+VM +P+R LL L++IG +L+L Sbjct: 602 SARQFLQSDFVESIQTILHEFDIDPHWLDLELTESMVMEDPDRIAKLLAELKQIGFALSL 661 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P D +K + S + A + S+I +A ++ IA+ + Sbjct: 662 DDFGTGYSSLNYLRRFPIDCLKIDRSFILDVASDATAASVANSVIGIAHSLGIHAIAEGV 721 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 L CD IQ + PL N + LL P T Sbjct: 722 ETREQYAFLAMCECDSIQGYLFSKPLPANDLAALLANPTPFKPTT 766 Score = 55.3 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 59/171 (34%), Gaps = 21/171 (12%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 +Q V ++ F ++++ + + + +F V +W D + Sbjct: 50 LQTWKGSVFVFCTAMVLFFLLRNAIKRALYGEALFRK------VVETIPTGIWVVDREGN 103 Query: 427 RVTTTPDIATIL---GLAS-------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 V +L G+ + + G + +H ++ + + Sbjct: 104 VVDCNFAAHGLLQEFGIQAYNDIQGYAEIQGWWSDNGQPVHPDEWG-----ISRSLSRGE 158 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L+ + + D ++ P+ + NG I + + DITE++K+ E Sbjct: 159 TCLREKIDIACTDGVRRTVLYTSLPLKSENGAITGAMALVQDITEKRKTDE 209 >gi|332701949|ref|ZP_08422037.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] gi|332552098|gb|EGJ49142.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] Length = 736 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 159/575 (27%), Positives = 277/575 (48%), Gaps = 7/575 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++Q V + + + +R S +G + D + ILG + + Sbjct: 156 IVQDVTESRRVKRRLLGSEQRFSTLFEHAGFGIALIDPNGRILDMNKAGVAILGYSLNEI 215 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 ++ YI+ D + RR + R D W + + Sbjct: 216 --RALHYSDYIYPEDVQRTKQFFRELQAGRRDYFELTKRYLRKDGALVWGRQIVTLVRKE 273 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 N + +I + DITE +++ + + AF D LT + NR FLDRL T + + + Sbjct: 274 NDEPDYFISMLEDITEHRRADDMLRHLAFHDALTELANRALFLDRLGTAIRRGKRNPDFI 333 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 +V+ +D+D++K +ND LG GD +L + R+ E ++ D LAR G+ F I+L + Sbjct: 334 FSVLFLDLDRFKLVNDSLGHPAGDAMLCEIAARLTECVRDSDTLARFGGDEFAILLDGLS 393 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + L+ +RK++A P L + E+ ASIG T + E++++A++AMY AK Sbjct: 394 DPLETLKIIERIRKALARPFFLDDHELFAGASIGVVLDTERYDSPEEIVRDADIAMYRAK 453 Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G E F R+ + + ++ DL A+E E L + PII L I G+EALI+ Sbjct: 454 ENGNAVYEIFDSRMHEQAREVLRMETDLRKALERGEFELYFQPIISLRGNRITGMEALIR 513 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIAS 802 W HP+ G +S EF+ AEE +I I+ ++L + W ++ + + IN+++ Sbjct: 514 WRHPERGLVSPGEFIPQAEEAGLIFDIDRWVLANACSILDLWSERYTAAHDLLLNINLSA 573 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K L + + ++ T PSR++L +E++++ E L +LR +G+SL LDD Sbjct: 574 KYFLKRDAVDDFSEILRVTGVRPSRLRLEITENLILDGDEHVTGKLLKLRAMGVSLALDD 633 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL PFD +K + S + EK +AI++S++ + KN+ ++A+ + Sbjct: 634 FGTGYSSLSYLVRYPFDAIKIDRSFILSMLEKSGDLAIVQSVLALGKNLGLEVVAEGVET 693 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +L GCD+ Q P+ + ++ LL + Sbjct: 694 LEQAAKLREWGCDFAQGYFYFRPMPASDVMDLLAK 728 >gi|253996222|ref|YP_003048286.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253982901|gb|ACT47759.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 699 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 137/574 (23%), Positives = 274/574 (47%), Gaps = 13/574 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445 IQ++ Q + + + + + ++ + +A + G + + Sbjct: 122 IQNIAKRKGIEQSLLAAELKYRSIFENTLEGIFQTTADGHYLIVNQSLAHMYGYSSPDEL 181 Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + ++ R+ F + ++E V D W+ R ++ Sbjct: 182 IHAFNSIQEQLYVKPGRREEFVQ----LLKENESVEKFESLVYRKDKSTIWISENARVVN 237 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + +G+IL Y G +IT +K E + A D+LTG+PNR DRL ++ + N Sbjct: 238 DESGNILYYEGTVENITARKNYEEKLEYQAMHDSLTGLPNRNMLNDRLQLCINFANRYKN 297 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + V +D+D++K IND +G VGD +LV + +R+ ++ D + RL G+ F I+L + Sbjct: 298 -KMAVAFLDLDQFKLINDSMGHEVGDQLLVIMAKRLSSAVREIDTVVRLGGDEFVIVLTN 356 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +++ I + +++A+P+ + + VT SIG + + + ++ +L+NA+ AMY Sbjct: 357 IDDTNDIFMSMQRILEAVAVPLTINNMDYLVTCSIGVSIYPDDGLDANLLLRNADTAMYK 416 Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + + + ++RV ++ +L A+E E L Y P + ++ G EAL Sbjct: 417 AKKAGRNNFQIYTQALNAALTERVTLEYNLRQAIELEEFILHYQPKVDFATGKVCGAEAL 476 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W IS +F+ IAEE +I+ I ++L + + + + I +N++ Sbjct: 477 IRWQPEGQDLISPLKFINIAEETGLIETIGEWVLATACYKAKALQQKTG-LHVPIAVNVS 535 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + L ++ +++ T PS ++L +E+ ++ + + L L+K+G+ L +D Sbjct: 536 PRQFRQSNLANTIKKILAVTQLDPSYLELEITENTLIDDSSKFIETLHSLKKLGVKLAID 595 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P D +K + ++ E AIL++I+ + +++ +IA+ + Sbjct: 596 DFGTGYSSLAYLKDFPIDRLKIDKVFVSSIEEDPTNKAILKAIVVLGQSLGIEVIAEGVE 655 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L +GCD +Q + + PL + L Sbjct: 656 TQYQYDYLKSIGCDQLQGYYYSKPLPEQQFEQFL 689 Score = 73.8 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 31/221 (14%) Query: 421 WDIVRDRVTTTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 +D V + + G A + H ++ DR R + + + R Sbjct: 27 YDQDWTMVFVSNGCKELTGYAPEDLLHNQYISYEAVTFAEDRVMVRDTIQNALTEGN-RY 85 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 + E+R+ AD W++ R P+ N+ G ++ G +I ++K +E L A Sbjct: 86 EVEYRINHADGSVIWVLERGNPIYNNAGMVIALEGYIQNIAKRK-GIEQSLLAAE----- 139 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG----DDVLVSL 595 + R F + L I +A Y +N L G D+++ + Sbjct: 140 -LKYRSIFENTLEGIFQTTADG-------------HYLIVNQSLAHMYGYSSPDELIHAF 185 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 I E L R F +L + K Sbjct: 186 -NSIQEQLY--VKPGRR--EEFVQLLKENESVEKFESLVYR 221 >gi|75908922|ref|YP_323218.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Anabaena variabilis ATCC 29413] gi|75702647|gb|ABA22323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Anabaena variabilis ATCC 29413] Length = 585 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 153/573 (26%), Positives = 269/573 (46%), Gaps = 14/573 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + S DI+ ++ +P + ILG + G Sbjct: 10 DGNQAEAALRESEAKFRSLIQNSSDIIGIFEPDGTIRYESPSVERILGYKPEELVGKNA- 68 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 +IH +D + + + E R R D + ++ + + + Sbjct: 69 -FDFIHPDDIAGSSESFNYLIQNLGATVLVESRFRRKDGSWCFLESTGSNLL-AEPSVKG 126 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + DIT++K + E ++ +A D LTG+PNR F+DRL ++ + + V+ + Sbjct: 127 IVINSRDITDRKLAEERLVHDALHDVLTGLPNRVLFIDRLRRAVEYAKRYSDHLFAVLFL 186 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG +GD +LV + +R+ E L+ DI AR G+ F I+L + Sbjct: 187 DLDRFKFINDSLGHTIGDQLLVIIAQRLIECLRPTDIAARFGGDEFIILLEGIQDISDTV 246 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 +++ + +P++L EI TASIG + + ++L+NA++AMY AK RG Sbjct: 247 RVVERIQEKLLVPVDLSGHEIFTTASIGISLSATGYEQPEDLLRNADIAMYRAKARGKAC 306 Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 E F R+ ++ DL A+E E + Y PI+ L I+G EAL++W HP+ Sbjct: 307 YEIFNSDMHVQIVERLQLENDLRKAIERHEFLVYYQPIVSLASGRIIGFEALVRWLHPEQ 366 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-------ANMPPIFILINIAS 802 G + EFM IA+E +I I+ ++L R W++Q + P+ I IN+ S Sbjct: 367 GIVFPEEFMPIAQETGLIIPIDAWVLREACRQTRQWQEQIPSQSVNLHQQPLSISINLCS 426 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 +L E + ++ T +KL +ESV+M N E + +L +LR +GI L +DD Sbjct: 427 SRFSQKKLLEDINQVLQDTGLDAQSLKLEITESVIMENGENATTMLYQLRNLGIELAIDD 486 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L L P + +K + S + G + I+ +I+ ++ + + A+ + Sbjct: 487 FGTGYSSLGRLHNFPINGLKIDQSFVSGRGVEAGNLHIVETIVTLSSKLGVDVTAEGVET 546 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ L + C+Y Q + PL +S L+ Sbjct: 547 PAQLQRLRELKCEYGQGYFFSEPLDSDSAKALI 579 >gi|253996421|ref|YP_003048485.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253983100|gb|ACT47958.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Methylotenera mobilis JLW8] Length = 1329 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 150/563 (26%), Positives = 277/563 (49%), Gaps = 13/563 (2%) Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 S E+ L S D + D ++ TI G + + G + L Sbjct: 773 LSAEEKLRLNAKVFESSRDGIVITDKNNKIISVNNAFTTITGYEAKEVVGKNPHMLASEK 832 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + ++F + + + G Q E + + + + + I + +++G I ++IGI + Sbjct: 833 LE--ESFYSAMWDSI-GVMGYWQGEVINQRKNGEIYTQWLSISTIKDADGKISQHIGIIS 889 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI+E+K + E I + D LT +PN+ DR L + T+M +D+D++K Sbjct: 890 DISERKVAEERIQFLSNFDPLTNLPNKNLLNDRTKLALATAKRL-KTAVTLMFVDLDRFK 948 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IN+ LG ++GD V+ L R ++ D + R G+ F ++L + ++ A A + Sbjct: 949 FINESLGPSIGDQVVKELAERFVAYMRPEDTVCRQGGDEFILLLPN-TDAEGAAHVAKKL 1007 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695 +A P N ++I +TASIG +++ + ++ ++A+ A+Y AK+ G N+ + F Sbjct: 1008 LDIVAQPFNFHGQKIVLTASIGISAYPQDGESFEQLAQSADAALYRAKYEGRNNFQFFAR 1067 Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 ++ D ++++ +L A+E+ E L Y P +I+GLEALI+W HP+ G +S + Sbjct: 1068 QMHEQAHDILLLESELRSAIEHEEFLLYYQPQYDSKTSKIIGLEALIRWQHPEKGLVSPA 1127 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ IAEE +I I ++L + + SW++ + + +N++ + L + Sbjct: 1128 VFIPIAEESGLIAEIGDWVLRTAVKQLASWQEAGLG-AVPVAVNLSVVQFHQDTLYGSVC 1186 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ T PS ++L +E + M + ER+ +L +L +G+ L++DDFGT S LSYL Sbjct: 1187 QILRDTKVDPSMLELELTEGIAMEDSERTLNVLNQLNSLGVRLSIDDFGTGYSSLSYLKK 1246 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 D +K + S + G + AI+ +II MAK++ IA+ + + L CD Sbjct: 1247 FKIDKLKIDQSFVRGIGSHPQDAAIITAIISMAKSLSFKTIAEGVETLEQLNFLIANSCD 1306 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 IQ + + PL + KLL + Sbjct: 1307 EIQGYYFSKPLPSTEVTKLLANQ 1329 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + +I I G A WL +IH D G L +++R A Sbjct: 682 FISENIYQITGYAKDEWLKDNF-WLDHIHTEDLAAALDSKKILFE--TGSLNHQYRFMHA 738 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + W+ ++ ++NG L +G DIT++ + E + NA Sbjct: 739 NGGYIWIEDQLTLTRDNNGKPLEIVGAWLDITDRLSAEEKLRLNA 783 Score = 63.0 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 75/245 (30%), Gaps = 31/245 (12%) Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389 +ERA+ I + I G + + L G ++V L+G T+ Sbjct: 280 SKHNHERALTQIISR---VIEVGGTKWTLFFQTTPAFETRILPYGKPMLVALLGSTLTIL 336 Query: 390 VLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +F E R + D V D + +LG G + G Sbjct: 337 SAFLAWFLLSSRQLAESRYQKLFDQASDGVLVLDHQHQFIAANLAATNMLGYQQGELLGM 396 Query: 449 --IRNWLPYI--HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + H N + + + E++ R D + R + Sbjct: 397 RLPDVLINNVTKHPEFNTNLISDI---------PTKDEWQYRRKDGSRFIAEVNCRKL-- 445 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 D Y I D+TE+K + IL LT + Q+ + + + D L Sbjct: 446 ---DKNYYFTIIRDLTERKLAENRILH------LTQLY--QALSE-VNQAIVRMGDDHEL 493 Query: 565 RPTVM 569 P V Sbjct: 494 FPVVC 498 >gi|291613922|ref|YP_003524079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291584034|gb|ADE11692.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 1149 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 146/587 (24%), Positives = 270/587 (45%), Gaps = 14/587 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 +L+ + + + + + + SLAV S + + D+ + + Sbjct: 569 LLLEMAMDISFALERFDAETERKKMSETLLKLSLAVEQSPNSIVITDLDANIEYANSNFT 628 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFH 493 + G + + G ++ + + + R + E R D + Sbjct: 629 KVTGYSLDEVLGKNPRFMQS-----GKTPKATYEDMWAHLTRGEPWKGELFNRRKDGTEY 683 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + I P+S +G ++ Y+ I DITE++ + E I D+LTG+PNR +R Sbjct: 684 IESVLISPVSQVDGRVMNYLAIKEDITEKRLTEERIEKLEHFDHLTGLPNRTQLNERFKY 743 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L L+ + TVM +D+D +K IND LG ++GD +L+ + +R+ E L+ D ++R Sbjct: 744 ALSLAQRSGE-QMTVMFLDLDHFKDINDTLGHSIGDQLLMDVAKRLKETLRDEDTVSRQG 802 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F +IL + A A + ++++ + E+ T SIG A + + Sbjct: 803 GDEFILILPG-TDENGAAHVAAKLMEAVSQAFQFEQHELVATCSIGIAIYPHDGENFETL 861 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 KNA+ AMY KH G N F + + L A+ +L+L Y P I Sbjct: 862 SKNADTAMYRVKHDGRNGFCFFTSEMQAHSARTLQLGNALRHALTRGQLHLHYQPQISTQ 921 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 D +VG EAL++W HP+ G+IS +EF+ IAE+ I I ++L + + W D Sbjct: 922 DGHVVGAEALLRWQHPELGSISPAEFIPIAEDNGQIIPIGEWVLRTAIKQLKDWMDSGL- 980 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 PP+ + +N+++ + L E + +++ ++ ++L +E+V M +P+ + ++ +L Sbjct: 981 PPMIMAVNLSAAQFRQSNLMELVTSILDESKVPHRYLELELTEAVAMDDPQLAIGVMDKL 1040 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 GI +++DDFGT S LSYL +K + S + AI+ +II MA ++ Sbjct: 1041 HTGGIKMSIDDFGTGYSSLSYLKRFKVYKLKIDQSFVHDITDDPDDKAIVAAIINMASSL 1100 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 IA+ + + L GC+ +Q + + PL + L+++ Sbjct: 1101 GMQTIAEGVETAGQLSFLRLQGCNEVQGYYFSKPLPAEQFVSYLQKQ 1147 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 69/214 (32%), Gaps = 18/214 (8%) Query: 360 KRLDNDIIQP---ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 R I+ P +GG+ +++ ++ +Q + + + D Sbjct: 247 GRTPASIVPPVVWRTLGGVSGVLLFSLLGLLFMRKQIRLRTQQLADSSSQLRATLDAIPD 306 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 ++++ + + +L + S G + + D + L Sbjct: 307 LLFEIGLDGHFYSYHSSRNDLLTAPATSFIGKKIG--DVLPPDAADICMSALQEA--NMT 362 Query: 477 GRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 GR + + + W + I ++ R+I + D+T++K + IL Sbjct: 363 GRSNGKTYALSLPQGES-WFELSISKKQDAKNQAPRFIVLVRDVTQRKVNETHILR---- 417 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 LT + + L + + + L P + Sbjct: 418 --LTKLY---AALSQCNQAIVRCSNKTELFPIIC 446 >gi|253999408|ref|YP_003051471.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253986087|gb|ACT50944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 718 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 151/577 (26%), Positives = 278/577 (48%), Gaps = 13/577 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445 IQ + Q + R S + ++ + P +A I G + + Sbjct: 144 IQDITQRKLNEQALQEAERRYRNIFENSIEGIFQTSQDGQYINANPALARIYGYESPEEL 203 Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + N ++ R F T++ + R + +E ++ D W+ R + Sbjct: 204 IQSLNNIAQQLYVQPESRQAFLTLMQ--LEDR--VVNFESQIYRRDGSTIWISENARAVR 259 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 N G +L + G DITE+K I A D+LTG+PNR DRL + + + Sbjct: 260 NDAGKLLYFEGTVEDITERKSYNALIEYQATHDDLTGLPNRTLMQDRLLQAISYADRTAS 319 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + V+ +D+DK+K IND +G +GD +L+++ RR+ ++ D +AR G+ F ++L + Sbjct: 320 -KLAVVFVDLDKFKDINDSMGHFIGDQLLIAMARRLESCIRDSDTVARPGGDEFVLLLSN 378 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++ + + P ++ ++ TVT+SIG + + TS +LKNA+ AMY Sbjct: 379 IHGMDALSQTLQRVLALTSEPCSIEGKDFTVTSSIGISLYPDDGKTSETLLKNADTAMYK 438 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + + +R+ ++ + A+ ++E +L Y P + L + I G+EAL Sbjct: 439 AKQEGKNNFQFYTRELNSILVERLEMEYQMRNALGHNEFHLHYQPKLNLRTQRITGVEAL 498 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W +P+ G IS + F+ IAEE +I+ I ++LE+ + Q + + + +N++ Sbjct: 499 IRWHNPRQGLISPNRFIPIAEESSLIEQIGSWVLEKACME-SIALSQLSGYDVPVSVNVS 557 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + L + ++ +T PS ++L +E + + +L L+ +GI L +D Sbjct: 558 PRQFQQSNLVGNISRVLQETGLKPSLLELEITEGTLADTSPQFIKVLNDLKGLGIKLAID 617 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L YL + P D +K + S + G AIL++I+ + N+ ++A+ + Sbjct: 618 DFGTGYSSLGYLKHFPIDNLKIDRSFVMGLESDTANQAILKAIVALGHNLGINLVAEGVE 677 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E L +GCD +Q + PL F+ KLL + Sbjct: 678 TERQRDFLLSIGCDEMQGFLFSQPLPFDQAGKLLLAQ 714 Score = 84.2 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 25/179 (13%) Query: 427 RVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + + + G + ++ DR R +D + RR R + E+R+ Sbjct: 55 MLFISDGCFDLTGYRPDELLHNGCTSFEELTLPEDRARIRNTVDDALS-RRERFEIEYRI 113 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 D Q W+ R + N G + G DIT++K E L A + R Sbjct: 114 MTIDGQIRWVNERGTGIFNPQGQVEALEGFIQDITQRK-LNEQALQEAERRY------RN 166 Query: 546 SFLDRLTTILDLSATDD--NLRPTVMVIDIDKYKKINDVLGIAVGDDV---LVSLTRRI 599 F + + I S N P + I G +++ L ++ +++ Sbjct: 167 IFENSIEGIFQTSQDGQYINANPALARI-----------YGYESPEELIQSLNNIAQQL 214 >gi|88857654|ref|ZP_01132297.1| sensory box protein [Pseudoalteromonas tunicata D2] gi|88820851|gb|EAR30663.1| sensory box protein [Pseudoalteromonas tunicata D2] Length = 725 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 146/585 (24%), Positives = 270/585 (46%), Gaps = 9/585 (1%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 ++ ++ V Q + + +R LA+ SG +WDWDI+ D V + + +LG Sbjct: 139 LIAFIGCVEDVTELCLSQQQLKDNQQRYELALKSSGAGIWDWDILNDVVHYSAKFSDLLG 198 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + +W IH +D D F T L + + E R+ + + W + Sbjct: 199 FDNLLFGTSWSSWTDQIHPDDLDIFETQLQNHLDDADKPFNIECRLISQKKKVLWFTVVG 258 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + +G R +G DIT + +S + I A D+LTG+PNR F +RL + S Sbjct: 259 EALRDEHGYPTRMVGSMVDITLKHQSQQMIWQQANFDHLTGLPNRNMFTERLKQEISESK 318 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + + ID+D +K++ND LG GD +L+ + R+ +L+ D + R+ G+ F Sbjct: 319 RYQQ-KFALFFIDLDHFKEVNDTLGHGAGDQLLIEVAERLQLILRESDTIGRIGGDEFTA 377 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 ++ N + I A + ++I +P + I ++ASIG + E+LK A+ Sbjct: 378 LIPHINQTCDIDSLAQKLIQTIELPFYIDGESIFISASIGITLFPDHSEKIDELLKFADQ 437 Query: 680 AMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY +K G +F + + ++L LA+ ++VY PI+ L +I Sbjct: 438 AMYRSKENGRKRFSYFTFAMQEQADHTRNLTQELHLAIIEQHFHVVYQPIMALPSRKITK 497 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++WDHP+ G IS ++F+ +AE +I I ++ A+ + W+ + P I Sbjct: 498 AEALVRWDHPELGLISPADFIPLAERSGVIIEIGNWVFYNAAKQALKWQQE-IDPSFEIS 556 Query: 798 INIASKDLLDNE--LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 IN + + + + L+ I + +E +++ + + + L + G Sbjct: 557 INRSPVQFQNPDPNADQKWVELLKNLGLIKG-ICIEITEGLLLDDTQGIKDKLLYFQNNG 615 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 + ++LDDFGT S LSYL + +K + + + + A+ +II MA + + Sbjct: 616 MDISLDDFGTGYSSLSYLTKFDINFLKIDRAFINDLEHNQNNQALCEAIIVMAHKLGLKV 675 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 IA+ + + + L + CD++Q ++ P+ + LK P Sbjct: 676 IAEGVESQRQLDFLAQAQCDFVQGYFISKPISAAAFEHQLKSPAP 720 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 4/122 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 +++ D+ + +LGL G ++ + H +D+ Sbjct: 41 YQHLAEHVPTGIFEVDLAGHCTFSNATFKQLLGLDDQLSLG--FSYTRHFHPDDKMAVVK 98 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + Y FRV + ++ I P+ + ++ +IG D+TE S Sbjct: 99 HWCRCIKKEQA-FNYTFRVHLPEQVELYLTINAVPVF-KDQQLIAFIGCVEDVTELCLSQ 156 Query: 527 EG 528 + Sbjct: 157 QQ 158 >gi|114045641|ref|YP_736191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] gi|113887083|gb|ABI41134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] Length = 1077 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 165/644 (25%), Positives = 300/644 (46%), Gaps = 16/644 (2%) Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382 T +Y + A+ L +I + + + I + P L + Sbjct: 428 TLLGLYLFSALFTAAITLWLGRKIIRSFMVKIT-RIANDMQRMAADPQLNINIDASGSDE 486 Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + Q + Q R + S + + D P + I G + Sbjct: 487 LARMAQAMNRMISERQKANHALSRAAAVFNYSAEGIMVTDADNHIELVNPAFSQITGYSL 546 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G + L H +F T + + + G+ + E + D Q + + I Sbjct: 547 EEVKGRSPSLLSSNRHP---SHFYTAMWEAL-QKEGKWEGEIWNKRKDGQVYPEYLAITV 602 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + N G+I+++IG+ DI+++K+ + + A D LTG+PNR+ F +RL + L+ D Sbjct: 603 VRNERGEIIQHIGLFMDISKRKQYEQDLWYQANFDTLTGLPNRKLFNERLQHEIQLAQHD 662 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + +++ID+D++K INDV G A GD +L + +R+ + D LAR+ G+ F +IL Sbjct: 663 SR-KLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLENIAGKNDFLARIGGDEFVLIL 721 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 N I A + +++A P NL EREI ++AS G + + S + +N E+AM Sbjct: 722 PRVTNEFAIEHMASRIIETLAAPFNLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAM 781 Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N+ + F ++ R+ +++ L AV +E L Y PI+ + +I +E Sbjct: 782 YQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFTLHYQPIVDMKTGQICSVE 841 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W P G I +F+ IAEE +I+ + ++L + D+ W+ + + IN Sbjct: 842 ALIRWQDPDLGLIPPDQFIGIAEETGLIEPMGEWVLNQAMHDLRQWQHMGLN--LNVAIN 899 Query: 800 IASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 ++S+ ++ + +Q ++ +P + + +ES++MG+ L +R +G Sbjct: 900 VSSRQCINTRGLGFDQVLQECFNRHHINPRNVHIEITESMLMGDASHCLSTLESIRHLGS 959 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914 + +DDFGT S LSYL P +K + S + ++++I+ M +++E ++ Sbjct: 960 QIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALDNSSNANLVKAIVMMGQSLEMELV 1019 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 A+ I E K L +GC Y Q ++ PL F+ I LL + P Sbjct: 1020 AEGIETEAQWKFLRDLGCHYAQGYLISKPLPFDEITPLLNQTLP 1063 >gi|113968479|ref|YP_732272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113883163|gb|ABI37215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 1077 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 165/644 (25%), Positives = 301/644 (46%), Gaps = 16/644 (2%) Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382 T +Y + A+ L +I + + + I + P L + Sbjct: 428 TLLGLYLFSALFTAAITLWLGRKIIRSFMVKIT-RIANDMQRMAADPQLNINIDASGSDE 486 Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + Q + Q R + S + + D P + I G + Sbjct: 487 LARMAQAMNRMISERQKANHALSRAAAVFNYSAEGIMVTDADNHIELVNPAFSQITGYSL 546 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G + L H +F T + + + G+ + E + D Q + + I Sbjct: 547 EEVKGRSPSLLSSNRHP---SHFYTAMWEAL-QKEGKWEGEIWNKRKDGQVYPEYLAITV 602 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + N G+I+++IG+ DI+++K+ + + A D LTG+PNR+ F +RL + L+ D Sbjct: 603 VRNERGEIIQHIGLFMDISKRKQYEQDLWYQANFDTLTGLPNRKLFNERLQHEIQLAQHD 662 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + +++ID+D++K INDV G A+GD +L + +R+ + D LAR+ G+ F +IL Sbjct: 663 SR-KLAILLIDLDQFKYINDVQGHAMGDLLLQDVAKRLENIAGKNDFLARIGGDEFVLIL 721 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 N I A + +++A P NL EREI ++AS G + + S + +N E+AM Sbjct: 722 PRVTNEFAIEHMASRIIETLAAPFNLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAM 781 Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N+ + F ++ R+ +++ L AV +E L Y PI+ + +I +E Sbjct: 782 YQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFTLHYQPIVDMKTGQICSVE 841 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W P G I +F+ IAEE +I+ + ++L + D+ W+ + + IN Sbjct: 842 ALIRWQDPDLGLIPPDQFIGIAEETGLIEPMGEWVLNQAMHDLRQWQHMGLN--LNVAIN 899 Query: 800 IASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 ++S+ ++ + +Q ++ +P + + +ES++MG+ L +R +G Sbjct: 900 VSSRQCINTRGLGFDQVLQECFNRHHINPRNVHIEITESMLMGDASHCLSTLESIRHLGS 959 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914 + +DDFGT S LSYL P +K + S + ++++I+ M +++E ++ Sbjct: 960 QIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALDNSSNANLVKAIVMMGQSLEMELV 1019 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 A+ I E K L +GC Y Q ++ PL F+ I LL + P Sbjct: 1020 AEGIETEAQWKFLRDLGCHYAQGYLISKPLPFDEITPLLNQTLP 1063 >gi|71907174|ref|YP_284761.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846795|gb|AAZ46291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 1006 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 145/572 (25%), Positives = 265/572 (46%), Gaps = 13/572 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 Q + + + + AV SG+ + D+ +T P + G S G + Sbjct: 441 QEVTAQQEMLAQMQLLASAVQYSGEAILITDVKNKILTVNPAFTRLTGYTSEEAVGRDPS 500 Query: 452 WLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 +L + + + RG Q E R D + + I + +G I Sbjct: 501 FLSAGRTMPEEYERMWNGIAE-----RGFWQGEIWDRRKDGGIYPKWMSISVIRGEDGMI 555 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ D++ ++ + E + A D LTG+ NR S RL L + D + R V+ Sbjct: 556 RYHVAHFTDVSSERAAEERLHHMAHHDVLTGLLNRLSLKGRLDQALAAARRDGS-RVAVL 614 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD++L+ + R+ + ++ D++AR+ G+ F I+L ++ Sbjct: 615 FVDLDRFKVINDTLGHHVGDELLIEVANRLRDGVRDSDVVARVGGDEFVIMLSGVEHTSA 674 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +A A + S+ + ++ T SIG A + + ++KNA+ AMYHAK G Sbjct: 675 VAMVAEKLVFSVGQSYQIGGYDLYSTPSIGIAIYPTDGEDGDILMKNADAAMYHAKMAGR 734 Query: 690 NHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N+ + F + + + L A+ N E L Y P+I L + LEALI+W+HP Sbjct: 735 NNFQFFDAKMNEAALERLNTEHALRRALANQEFCLYYQPVIDLASNRVASLEALIRWNHP 794 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G + +F+ IAEE +I+ + ++L R + + A + I + +NI++ + + Sbjct: 795 EKGLLLPGKFIGIAEETGLIQPLGEWVLWAACRQLADF-AAAGISGIKMGVNISAIQMRN 853 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L + +I P + +ESV M P + +L L +G+S+ +DDFGT Sbjct: 854 GNLPLLARGVIEAYDIDPRNLIFEITESVAMEQPTETVRILDLLNAMGVSVAIDDFGTGY 913 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL P + +K + S + E I + I +A ++E ++A+ + + + Sbjct: 914 SSLSYLRMFPINHLKLDRSFVEQIGEEIDGCVICDATIGLAHSLELKVVAEGVETQAQLD 973 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L GCD +Q + P+ + +L +++ Sbjct: 974 YLRSRGCDMVQGFLFSRPVPADEVLAFIRQYN 1005 Score = 89.6 bits (221), Expect = 3e-15, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 2/196 (1%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF-S 397 + + L +I AL+G + + ++ + S Sbjct: 263 YRALERYPFYAAAALSEAEVMATLRQRVIFVALLGCSMFVCLIAVVVGLYRSQRREQLVS 322 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 Q + ER + A + W+ + VT + ++ I +++L IH Sbjct: 323 QQLLLKEERLTAAQRIAQLGSWEIHLPSMHVTCSDELYRIFEFTKRETGYQYQDFLAKIH 382 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DR L + R+ + R+ D + +++ +G LR IG + Sbjct: 383 PEDRSVVDKTLHESIASRQ-PASLKHRLLMPDGRVKYVLESCETEYGRDGTPLRVIGTSQ 441 Query: 518 DITEQKKSLEGILCNA 533 ++T Q++ L + A Sbjct: 442 EVTAQQEMLAQMQLLA 457 >gi|89092410|ref|ZP_01165364.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Oceanospirillum sp. MED92] gi|89083498|gb|EAR62716.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Oceanospirillum sp. MED92] Length = 594 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 275/568 (48%), Gaps = 6/568 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q V+ + + R +LA+ G+ + +WDWD V + + + +G+ + Sbjct: 15 LKQRVIGLSKAEKVLRETEARYALAMQGANEGLWDWDPVSKELYLSARLLRTIGMGKDTF 74 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 WL ++H DR++++ +L + + E+RV+ + + W++ + N Sbjct: 75 KTTSNEWLSWVHEEDREHYQQVLCHHLKGETEYFRCEYRVQNSSGGYVWVLAHGMALRND 134 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 R +G DITEQK+ + +L A D+LTG+PNR LDRL+ + S + Sbjct: 135 QNIAYRMVGSIGDITEQKEYQDKLLHQATYDHLTGLPNRALALDRLSVAISRSRRN-KTS 193 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 ++ +D+D +KKIND LG VGD L ++ R+G + D +ARL G+ F +IL + Sbjct: 194 VGLLFVDLDNFKKINDTLGHEVGDLHLKEISNRLGYCFREEDTIARLGGDEFLVILPDLD 253 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + ++ + + + P+ + E + +ASIG + S +L+NA+ AMY AK Sbjct: 254 SPKQVEEVCERILATAMQPVTINGYEFSTSASIGVTIYPDDGYEPSGLLRNADAAMYQAK 313 Query: 686 HRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G + F + ++ L A+ +L L Y I+ ++VG EAL++ Sbjct: 314 AQGKDTFCFFTPEMDQETVRKFTMESYLRQALSKDQLSLHYQSIVSASSGDVVGAEALLR 373 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W P++G + +F+ +AEE +I I ++LE W P I +N++ Sbjct: 374 WHCPEYGQVPPDQFIPLAEESGLIVTIGDWVLETACLQAAEWMA-TACVPFKIAVNVSYP 432 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 D + ++ ++ K+ ++L +E ++M + L +L +G+ L++DDF Sbjct: 433 QFRDGHIVSTVEKVLKKSGLPAQCLELELTERLLMEDERGCAEALKKLSAMGVQLSIDDF 492 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL P +T+K + S + +++ A++ +II MA + ++ + + Sbjct: 493 GTGFSALNYLQRFPVNTLKIDRSFVAELDCSKESPALISAIIQMAHALGIEVVGEGVETR 552 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSI 949 + LT CDY+Q H A P+ + Sbjct: 553 QQVNFLTLQTCDYLQGYHFARPVPADQF 580 >gi|149180281|ref|ZP_01858786.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Bacillus sp. SG-1] gi|148852473|gb|EDL66618.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Bacillus sp. SG-1] Length = 988 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 161/565 (28%), Positives = 292/565 (51%), Gaps = 10/565 (1%) Query: 401 FSDGERQSLAVLGSGD-IVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 ++ ERQ L + S D +W D+ +++ + + TI G ++ + W I+ Sbjct: 275 LAETERQVLKISNSLDVGIWSMDVKKNQYIFVSKGFETICGYSAEDFKQGLLQWEDLIYC 334 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D F ++ + + ++R+ + W+ + N+ GD++R GI +D Sbjct: 335 EDLHLFEQRKEALHTGKVPK--QQYRIVHKNGNTKWVQDELITTFNTKGDLVRIEGILSD 392 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITEQK++ E + A D LT +PNR+ F L ++ S + VM ID+D +K+ Sbjct: 393 ITEQKEAEEKVNYIAHHDYLTDLPNRRKFEQELQKFIEQSKMANQ-EFGVMYIDMDGFKR 451 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG A+GD +LV ++ R+ + + D +AR+ G+ F +++ ++ + A + Sbjct: 452 VNDTLGHAIGDKLLVEISTRLLDCVPQNDFVARIGGDEFSVLIDKMHSLEQSTTIAKKIV 511 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696 ++ +P + E+ VTAS+G A++ + +L+ A+ A+Y AK G N+ + + Sbjct: 512 AALEVPYKIHGYELFVTASVGVAAYPQDGHDAQTILQKADKALYRAKEMGKNNYQIYNSS 571 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ ++ DL AV+N ELY Y P + E++VG EALI+W+HP+WG +S +E Sbjct: 572 MNIEAYKLYSLENDLRRAVKNKELYFHYQPKVDAQTEKLVGAEALIRWEHPEWGQVSPAE 631 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I + + + I I +W D+ P + I IN++ K + NE E + Sbjct: 632 FIPLAEENDLIFKVTSWTFQTICTQIKNWTDRNL-PLVPISINVSPKIFIKNEWQEELIY 690 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 +I+ + P I+L +E ++ N E + +L+++G+ ++LDDFGT S L YL Sbjct: 691 IINNSNVDPRLIELEITEQALIKNEESFSAGIEKLKQLGVKISLDDFGTGYSSLLYLKKF 750 Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 DTVK + S + + + I ++II MA + T+IA+ + L + CD IQ Sbjct: 751 KLDTVKIDKSFVDDILKGKPTITKAIINMAHEFDMTVIAEGVETRAQQSFLQKQDCDQIQ 810 Query: 937 DSHVASPLGFNSILKLLKERFPLVK 961 + P+ + +L R P++K Sbjct: 811 GYLYSKPILPEDLEELF--RNPVLK 833 Score = 82.3 bits (202), Expect = 4e-13, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 2/143 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 I VI + A + S R + A + W++DI D + + +LG+ Sbjct: 129 FIISGVITDISALAIQKEHAESLEIRLNTAQQLADIGTWEYDIANDECSLSYKSYEMLGM 188 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + L H D+D F S + +R + R+ +D + Sbjct: 189 -PYGITPTFQMLLETAHPEDKDIFLNEFVSALNEKRN-FHCQNRIIRSDGAERILAHFGE 246 Query: 501 PMSNSNGDILRYIGIANDITEQK 523 + + N ++YIG DITEQK Sbjct: 247 VILDDNQKPVKYIGTTYDITEQK 269 >gi|313111782|ref|ZP_07797575.1| hypothetical protein PA39016_004010078 [Pseudomonas aeruginosa 39016] gi|310884077|gb|EFQ42671.1| hypothetical protein PA39016_004010078 [Pseudomonas aeruginosa 39016] Length = 1245 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + ++ + + + V D + + I G + G + L Sbjct: 675 RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + + + R G Q E R + + + I + N G+I ++G+ Sbjct: 734 GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F RL LD + +++ V+ ID+D++ Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG +GD +L ++ R+ + L+ D +ARL G+ F I+L + A Sbjct: 851 KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P E V+AS+G A + + ++KNA+ AMY AK RG + +E + Sbjct: 911 LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++R+ ++ +L A+E EL L Y P + L +VG EAL++W HP +G IS Sbjct: 971 RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I + ++LE + + W+ + P + +N+A L +L E + Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + L+ ++ PSR++L +ES +M E + +L L+++G+ L +DDFGT S LSYL Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G AI R+II + ++++ T+IA+ + E LT GC Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209 Query: 933 DYIQDSHVASPLGFNSIL-KLLKERFPL 959 + IQ ++ PL K LK R P+ Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237 Score = 78.8 bits (193), Expect = 4e-12, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 5/171 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L+ V I++ + + + V + + + V I W+ Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327 Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + ++R +P +LG G W +H D + S R Sbjct: 328 MRLEKNRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++R+ AAD + W+ + P+ + G L G+ DITE K + + + Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W L + L L N + G +L VI+ Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVVLDQTPALVVVIRD 546 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448 + + + E+ + A D + + + + G + Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606 Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + DR +++ + + VR + + + + +G Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661 Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534 + + IA DITE++ E + A Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687 >gi|53804176|ref|YP_113988.1| sensory box protein [Methylococcus capsulatus str. Bath] gi|53757937|gb|AAU92228.1| sensory box protein [Methylococcus capsulatus str. Bath] Length = 965 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 161/571 (28%), Positives = 271/571 (47%), Gaps = 12/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455 Q + A + D V D + P TI G ++G + G L Sbjct: 401 RQKATAQLRLIETAFQHTRDAVLITDARARILRVNPAFETITGYSAGEVVGRTPRMLQSG 460 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D +R + G E R D + + +G Y+ I Sbjct: 461 RH--DGAFYRRFWRAL--ETEGHWSGEIWNRHRDGHIFPAWQSVSAVKGPDGSTTHYVSI 516 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI+E K++ I ++ D+LTG+PNR F RL +++ +A D + ++V+D+D+ Sbjct: 517 FTDISEFKRAEAQIRYLSYHDDLTGLPNRAYFQARLDQLIEAAARDRK-QIALVVLDLDR 575 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG +VGD++L + RI + D +AR G+ F +IL +++++ A A Sbjct: 576 FKTINDSLGHSVGDELLCQVAERIQDCTGQGDFVARQGGDEFVVILAD-SDAVRAARVAN 634 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 AM +IA P R + VT S+G + + S ++K+A+ AMYHAK G N + F Sbjct: 635 AMISAIAKPAVAGGRTLIVTPSLGISLYPHDAGDSESLIKSADAAMYHAKSLGRNTYQFF 694 Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++R+ ++ L A+ N E L Y P I + ++GLEALI+W HP+ G + Sbjct: 695 SAEMSAVATERLALENALHQALSNGEFRLYYQPQIEVCSRRLIGLEALIRWRHPEVGWVP 754 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AEE +I I ++LE R W+ + + +N++ L ++ E Sbjct: 755 PLRFIPLAEETGIIHRIGRWVLEEACRQQREWQAAGLCI-VPVAVNLSPLQLQKDDFPEQ 813 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++AL+S +P ++L +E+ VM + R +L +L++ G ++DDFGT S L YL Sbjct: 814 VEALLSGCRLAPGLLELELTETAVMRDVGRMSDMLRKLKERGTRFSIDDFGTGYSSLGYL 873 Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P D +K + S + T E AI R+II +AK + ++A+ + ++ L R G Sbjct: 874 NRFPVDKLKIDQSFIRDVTRREDHAAITRAIIALAKQLHLKVVAEGVETAEQLEFLERAG 933 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 CD Q + + P+ + I L + Sbjct: 934 CDGAQGFYFSRPVPADEIAGWLSREGAVQDR 964 Score = 107 bits (267), Expect = 1e-20, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 6/169 (3%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 D + AL V I + G +L + A + W+ D+V Sbjct: 2 DYLILALGVAFVPIALAYGL-----LLKPKRAEAALRRSAFHLREAQQVANLGSWELDLV 56 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + R+ + + I + +L +H +DR+ + RG + R Sbjct: 57 QGRLEWSDQVFRIFEIDPERFEASYEAFLALVHPDDRERVDAAYRRSIA-DRGSYEIVHR 115 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + D + + R + + +G LR +G D+T ++ E + A Sbjct: 116 LLMPDGRVKHVRERCQTFYSEDGRPLRSVGTVWDVTSFHETEEKLHRLA 164 Score = 76.1 bits (186), Expect = 3e-11, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 3/130 (2%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 R + V +GD V D+ T + G A+ + G LP + Sbjct: 154 HETEEKLHRLAAIVESTGDTVIVSDLQGRIRTWNKGAERMWGYAAEEIIGQPVTVLPPLA 213 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 IL + +++E R D + + + + P+ ++ + I Sbjct: 214 KQGEPG--QILRRVIDE-HEVVRFESRGLHKDGRDFPISLTVSPLFDAENRLTGVSAIIR 270 Query: 518 DITEQKKSLE 527 DITE ++ Sbjct: 271 DITEMERLKA 280 Score = 43.0 bits (100), Expect = 0.29, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 11/155 (7%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + +I+ + + + + S + D + + P A Sbjct: 262 LTGVSAIIRDITEMERLKATLQERLKLVEMVFQYSVSCLVVLDPQFNFIRVNPAYARACR 321 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD----NQFHWM 495 G L + +D R I + V RR D +W Sbjct: 322 RDVAEFEGRNHFEL---YPSD---ARFIFEEVVRTRRPFEAVARPFTFPDQPERGVTYW- 374 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + P+ + G++ + D+T+++K+ + Sbjct: 375 DWNLVPVLDGKGEVEYLLFSLVDVTDRQKATAQLR 409 >gi|329910718|ref|ZP_08275360.1| Sensory box/GGDEF family protein [Oxalobacteraceae bacterium IMCC9480] gi|327546109|gb|EGF31171.1| Sensory box/GGDEF family protein [Oxalobacteraceae bacterium IMCC9480] Length = 1127 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 143/661 (21%), Positives = 288/661 (43%), Gaps = 16/661 (2%) Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHG----MKGYERAVLLIPAWILIFIWFIGLWMA 357 + P TA +T + + +GY A+ + I + + + Sbjct: 471 WTPAATALRTGLTGVVGDVMAILPLQAWQELACARGYRCAISMPLLDDGIVFGVLTICAS 530 Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417 D I + + I G +++ + + + E+ S + ++ Sbjct: 531 YAHAFDASQID---MFEELACDIAYGVIHLRNKDGRANAERSLQASEEKLSKIMESIDNV 587 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 VW + +P + + G + + W IH +D R + G Sbjct: 588 VWSHS-GSHLLYLSPIVKQVYGRPAEDFFADAKLWYAVIHPDDAARVRNRRGKLL--LNG 644 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + EFR+ D W+ R + + +++G ++R+ G+ DIT +K+ + A D Sbjct: 645 SITQEFRILRPDGSIRWIEDRAKAVRDASGTVIRFDGVEIDITGRKEDEARFVHMANHDA 704 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+ NR DRL + + L +M +D+D +K++ND G +GD +L ++ Sbjct: 705 LTGLANRNLLSDRLAQSMLQARRAHGL-LALMFMDLDHFKEVNDNGGHLLGDLLLKAVAA 763 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ + ++ D +AR G+ F ++L + + ++ + + P + + + V+ S Sbjct: 764 RLRDTIRDNDTVARQGGDEFIVLLTNLHTQAEVVVVVDKILAAFIPPFLVDGQTLMVSVS 823 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 +G + +L+NA+ AMY AK + G V+ + ++ L +A Sbjct: 824 VGVTVFPDDSDDMPALLRNADTAMYRAKAQDGTSVQYYSKEMGVLSVERSDLEARLRVAA 883 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 ++ + + Y P + + E I+G+EALI+W IS + F+ +AEE+ +I I ++L Sbjct: 884 DHRDFTVFYQPKVNIDSECIIGVEALIRWPQADGSMISPALFIPVAEEIGLITQIGEWVL 943 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 +W+D P I + +N++++ + L E + + + ++L +ES Sbjct: 944 RTACAQNKAWQDAGL-PRICVAVNLSARQFMQPGLLESVSRALRDSGLDACHLELELTES 1002 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 ++M + E L L+ +G+ L++DDFGT S LSYL P D +K + S + Sbjct: 1003 IMMNSAEHFITTLHALKSMGVQLSIDDFGTGYSSLSYLKRFPIDRLKIDQSFIRDIATDP 1062 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I R++I + ++ +IA+ + + L CD IQ + + P+ ++ +LL Sbjct: 1063 GDATITRAVIALGHSLNLKVIAEGVETAEQLAFLRANQCDEIQGYYFSRPVAAGALAELL 1122 Query: 954 K 954 + Sbjct: 1123 E 1123 >gi|15595772|ref|NP_249266.1| hypothetical protein PA0575 [Pseudomonas aeruginosa PAO1] gi|9946445|gb|AAG03964.1|AE004493_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 1245 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + ++ + + + V D + + I G + G + L Sbjct: 675 RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + + + R G Q E R + + + I + N G+I ++G+ Sbjct: 734 GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F RL LD + +++ V+ ID+D++ Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG +GD +L ++ R+ + L+ D +ARL G+ F I+L + A Sbjct: 851 KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P E V+AS+G A + + ++KNA+ AMY AK RG + +E + Sbjct: 911 LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++R+ ++ +L A+E EL L Y P + L +VG EAL++W HP +G IS Sbjct: 971 RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I + ++LE + + W+ + P + +N+A L +L E + Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + L+ ++ PSR++L +ES +M E + +L L+++G+ L +DDFGT S LSYL Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G AI R+II + ++++ T+IA+ + E LT GC Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209 Query: 933 DYIQDSHVASPLGFNSIL-KLLKERFPL 959 + IQ ++ PL K LK R P+ Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237 Score = 78.8 bits (193), Expect = 5e-12, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L+ V I++ + + + V + + + V I W+ Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327 Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + +R +P +LG G W +H D + S R Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++R+ AAD + W+ + P+ + G L G+ DITE K + + + Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434 Score = 56.1 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W L + L L N + G +L VI+ Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448 + + + E+ + A D + + + + G + Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISSLEDGTLIDVNEGFTRLTGYRRDEVISR 606 Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + DR +++ + + VR + + + + +G Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661 Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534 + + IA DITE++ E + A Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687 >gi|78485494|ref|YP_391419.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] gi|78363780|gb|ABB41745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Thiomicrospira crunogena XCL-2] Length = 1466 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 150/565 (26%), Positives = 267/565 (47%), Gaps = 12/565 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 + + E S S + + D + + + I G + G R Sbjct: 906 HKKTEAQIELASKVFEQSREGIMITDSNQKILMVNEAFSEISGYSVEETLGKTPRMLASG 965 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H R+ ++ + S +G Q E R + + + I +++G++ Y+GI Sbjct: 966 RHS--REFYQNVWKSIKE--KGHWQGEIWNRRKNGEIFPEWLSISRGLDTSGNVTEYVGI 1021 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 NDI++ K+S E I A D LTG+ NR+ +DRL + + + N ++ ID+D Sbjct: 1022 FNDISKVKESEEKIKHLAHYDPLTGLVNRELLMDRLNHSISTADRN-NTPLALLFIDLDH 1080 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG VGD +L+ + +RI ++L+ D +AR G+ F ++L A Sbjct: 1081 FKNVNDTLGHQVGDQLLIEVGQRILKILRDEDTIARQGGDEFIVVLPD-TGENGAVHVAE 1139 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +SI+ +NL ++ +T SIG A + + +LKNA+ AMY AK+ G N F Sbjct: 1140 KILESISDQLNLKPYKLFITPSIGIAVYPQDGKDADSLLKNADTAMYQAKNDGRNVYRFF 1199 Query: 696 RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + I+ L +A+ + + L Y P I+G+EALI+W+HP+ G +S Sbjct: 1200 TMEMQAHSSRIMQIESALRVALFDQQFELYYQPQTCAKSGSIIGVEALIRWNHPEMGPVS 1259 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ +AE+ I AI ++L R I W + P I + +N+++ +L + Sbjct: 1260 PQEFIPVAEQSGQILAIGWWVLRTAIRQIKIWSEH-GKPCIKVAVNLSAVQFRYEDLPKQ 1318 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++ + SP ++L +ESV M NPE ++ +L GI +++DDFGT S LSYL Sbjct: 1319 VMKILEEEGVSPEFLELELTESVAMANPEAVIEMMDKLVGHGIKMSIDDFGTGYSSLSYL 1378 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +K + S + +I+ +II ++K + IA+ + + + L Sbjct: 1379 KRFKVSKLKIDQSFIRDLAVDSDDRSIIEAIISLSKALGLKTIAEGVETQAQLDFLQEKQ 1438 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 CD IQ + + L + +++ Sbjct: 1439 CDEIQGFYYSKALTPEAFDAFYEKQ 1463 Score = 75.0 bits (183), Expect = 6e-11, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 6/159 (3%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTT 431 + I I H +R +++ + D + Sbjct: 758 MAIDIGFALNDFYHAKERKIIEASRQEALDRLQKIADRLPGVIYQFRLMPDGTSSFPFAS 817 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 + I + + IH D D+ + ++ + E+RVR ++ Sbjct: 818 DALYEIYRVKPEDVTEDSSKVFEVIHPEDVDDVQKSIEESAEHLT-PWYQEYRVRFKNDD 876 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 W+ P +G IL + G DI++ KK+ I Sbjct: 877 VRWLSGNAMPEKQPDGSIL-WHGFITDISQHKKTEAQIE 914 Score = 69.2 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 13/167 (7%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG----------DIVWDW 421 + +++V +I + ER + + Sbjct: 307 LVFWIVLVSFSALFLIGIAFLIVLKKERDLQVLERYAEKTEAEKVLQKFYELPFIGMAIL 366 Query: 422 DIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D D+ + + IL +S + ++ IH D L + Sbjct: 367 DAQHDKWIRFNDRLPKILRYSSQDLAQK--SFNEIIHPKDLAEVNAQLTDIESGKSEGFT 424 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 E + A+D+ + I ++ + NG + Y+ D+TE K E Sbjct: 425 TELHLLASDDSIVFGTINVKCVRGENGRVQYYLMTVQDVTELKHLAE 471 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 24/167 (14%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +Q V + ++ + + V D+VW D + P G Sbjct: 457 LMTVQDVTELKHLAELNIEHQNQLNALVHTIPDLVWLKDTEGLYLACNPSFERFFGAKEA 516 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-------RGRLQYEFRVRAADNQFHWMI 496 + G D D L F ++ E + ++N + + Sbjct: 517 DIIGKT----------DYDFVDKALADFFRENDCNAMAAEESIENEEWLTFSENGYRGLF 566 Query: 497 IRI-RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 I PM N G ++ +G+A DI+++K+ + LT + Sbjct: 567 STIKTPMKNEEGQVIGVVGVARDISKRKEDEAQLER------LTKLY 607 >gi|34495997|ref|NP_900212.1| hypothetical protein CV_0542 [Chromobacterium violaceum ATCC 12472] gi|34330278|gb|AAQ58219.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 633 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 143/579 (24%), Positives = 265/579 (45%), Gaps = 16/579 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 ++ AT G + LA S + + D +T I G Sbjct: 55 AYLCATARDISGRRQTERQLRLAAQVFESSNEAILISDPDNRILTVNRAFGHITGYGEAE 114 Query: 445 MHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L DR F + + R G+ E R + + I + Sbjct: 115 VRGSKASMLFS----DRHEPAFFQQMWQTLQQR-GQWSGEIWNRRKSGEHFPCWVNISVL 169 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G+I ++ + DI+E+K+ + A D LT +PNR DRL + + Sbjct: 170 QDGQGEISHFVALFTDISERKEQEARVQHMAEYDALTDLPNRVLVNDRLHQAIRQAELQH 229 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 N + V+ +D+D +K IND LG GD++L + RR+ ++ D + R G+ F +IL Sbjct: 230 N-QLAVLFVDLDHFKNINDTLGHCAGDELLKEVARRLAGAVRGLDTVGRTGGDEFVLILP 288 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 S N + A A + ++I P + E + V SIG + +L NA+LAMY Sbjct: 289 SINQPGEAAQIAERILRTIQQPFQIGEHSLVVGCSIGISLMPDDGSDIQTLLMNADLAMY 348 Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK G N + ++R++++ L A+E +LYLVY P + + ++G EA Sbjct: 349 HAKAHGRNTFRFYTREMNTQVAERLLMENRLRRAMEQEQLYLVYQPQYDMAGQRLLGCEA 408 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W P G I F+ +AE+ +I + ++L++ R W P+ + +N+ Sbjct: 409 LLRWRDPDEGLIMPGRFIPVAEDTGLIVPLGRWVLDQACRQASLWLRAGL-EPMRVAVNV 467 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ L+ ++ + ++ + + ++L +ES +M + + + L ++ +G+ L + Sbjct: 468 SAHQLMRHDFIDDVREALQRHALPGHCLELEVTESTLMADADLASRQLAVIKAMGVRLAI 527 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL D VK + S ++ E+ AI+ +I+ +A + +A+ + Sbjct: 528 DDFGTGYSSLAYLKRFAPDLVKIDRSFISDLPGDEENAAIVSAIVHLAGALGMETLAEGV 587 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 E + L +GC+ +Q + SPL + + L+++ Sbjct: 588 ENENQQRFLQTLGCEAMQGYLLGSPLAEEMMTRRLEQQQ 626 >gi|218889316|ref|YP_002438180.1| hypothetical protein PLES_05721 [Pseudomonas aeruginosa LESB58] gi|218769539|emb|CAW25299.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 1245 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + ++ + + + V D + + I G + G + L Sbjct: 675 RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + + + R G Q E R + + + I + N G+I ++G+ Sbjct: 734 GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F RL LD + +++ V+ ID+D++ Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG +GD +L ++ R+ + L+ D +ARL G+ F I+L + A Sbjct: 851 KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P E V+AS+G A + + ++KNA+ AMY AK RG + +E + Sbjct: 911 LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++R+ ++ +L A+E EL L Y P + L +VG EAL++W HP +G IS Sbjct: 971 RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I + ++LE + + W+ + P + +N+A L +L E + Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + L+ ++ PSR++L +ES +M E + +L L+++G+ L +DDFGT S LSYL Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G AI R+II + ++++ T+IA+ + E LT GC Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209 Query: 933 DYIQDSHVASPLGFNSIL-KLLKERFPL 959 + IQ ++ PL K LK R P+ Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L+ V I++ + + + V + + + V I W+ Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVNRRRQLERELRDSEQHYRGLVESLNAIAWE 327 Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + +R +P +LG G W +H D + S R Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++R+ AAD + W+ + P+ + G L G+ DITE K + + + Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W L + L L N + G +L VI+ Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448 + + + E+ + A D + + + + G + Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606 Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + DR +++ + + VR + + + + +G Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661 Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534 + + IA DITE++ E + A Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687 >gi|119897569|ref|YP_932782.1| EAL/GGDEF/PAS/PAC-domain-containing signalling protein [Azoarcus sp. BH72] gi|119669982|emb|CAL93895.1| EAL/GGDEF/PAS/PAC-domain containing signalling protein [Azoarcus sp. BH72] Length = 880 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 154/609 (25%), Positives = 278/609 (45%), Gaps = 18/609 (2%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF------SDGERQSLAVLGSGDIVW 419 ++ L G L++ ++ + T + A + + I S+ + + + + Sbjct: 272 VVALGLAGYLMIAILRLQRTSLALAGANEHLEERIQTLRLTESELHLYANVFTNASEGMA 331 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D V P I G + +HG L D +R + + +RG+ Sbjct: 332 ITDAQARIVAVNPAFTDITGYSIEEIHGRTPAVLAS-GRQDAAFYREMWATL--GKRGQW 388 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 Q E R + + + I ++ +G + YIGI +DIT++K+S I A D LT Sbjct: 389 QGEIWNRRRSGEIYPEWLSITAITEGDGGVSHYIGIFSDITDRKESEARIRHLAHHDALT 448 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR DRL + + + + + V+ +D+D++K IND LG +GD +L +T+R Sbjct: 449 GLPNRLLLQDRLGQAILKARRN-STQAAVLFLDLDRFKTINDTLGHEIGDGLLRQVTQRC 507 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 ++ D +AR G+ F I+L + A + ++ P L E+TVT SIG Sbjct: 508 LGAVRETDTVARQGGDEFVIVLPDLEHGQDAGTIARKILAALTEPCRLGPHELTVTGSIG 567 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVEN 717 A + S +L+NA+ AMY AK G N + + ++++ L A++ Sbjct: 568 IALYPGDGADPSMLLRNADAAMYRAKADGRNGFQFYAADMNTHSLGELLLEHQLRGALDR 627 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 +EL L + P + D I G EAL++W HP G ++ F+ AEE +I I ++L Sbjct: 628 NELRLYFQPKVNAADGCIEGCEALLRWQHPDLGLLAPGRFVPAAEESGLIVPIGEWVLRE 687 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R + +W D P+ + +N++ + ++ ++ +++ ++L +E+++ Sbjct: 688 ACRQLRAWIDAGLA-PVPVAVNLSGQQFAHQDIVALVREALAEHRLPAPMLELELTETML 746 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KR 895 M + ER+ L LR +G++L +DDFGT S L+YL + +K + S + Sbjct: 747 MRDLERTIATLAELRAMGVTLAIDDFGTGYSSLAYLRQFDVNALKIDRSFVHDIRPGSSD 806 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK- 954 I ++I +A N+ T+ A+ + L R GCD +Q P + + L Sbjct: 807 GKIATAVIALAHNLGLTVTAEGVETAAQQHFLARHGCDQLQGFLFGQPEPAEAFAQRLAD 866 Query: 955 --ERFPLVK 961 R P V+ Sbjct: 867 DDRRAPHVR 875 >gi|291612540|ref|YP_003522697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291582652|gb|ADE10310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 716 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 143/576 (24%), Positives = 269/576 (46%), Gaps = 13/576 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SM 445 +Q V ER + + ++ + P +A I G S + Sbjct: 142 MQDVTQRKLSEVAARDAEERYRSIFENALEGIYQTTPDGHYLNFNPALARIYGYESAVDL 201 Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 I + ++ + R F T+++ +E +V + W+ + Sbjct: 202 VCSISDIQQQLYVDPDKRQEFITLMNVH----GQVSNFEAQVYRKGGEIIWISENAHEVK 257 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + +G +L Y G DITE+K + I A D LTG+PNR DRL + ++ + Sbjct: 258 DRDGKLLFYEGTVEDITERKNYEQQIEYQATHDALTGLPNRTLLADRLQQYIGIADRYTS 317 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + V +D+D++K IND +G GD++L + R+ ++ D + RL G+ F ++L Sbjct: 318 -KLAVAFVDLDQFKLINDSMGHHAGDELLKIMAARLASCVRESDTVVRLGGDEFVLLLTG 376 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + I++ + S+A P + +R+ V+ SIG + + ++ +LK A+ AMY Sbjct: 377 LHKIEDISESMQRVLSSVAGPCTIEDRDFVVSCSIGISIYPDDARDTTTLLKYADSAMYK 436 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 +K G N+ + + + +R+ ++ L LA+EN E L Y P + L+ I G EAL Sbjct: 437 SKQSGRNNFQFYTDELNQRLMERLDLEYRLRLALENEEFLLHYQPKLALVSGAICGAEAL 496 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W IS + F+ IAEE +I+ I L++L R + + I +N++ Sbjct: 497 IRWQPAGESMISPASFIPIAEETGLIEDIGLWVLHEACRQAVKLNRLYGRE-LPIAVNVS 555 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + ++L +++ + + +P+ ++L +ES ++ + L L+ +G+ L +D Sbjct: 556 PRQFRQSDLVSMVRSALLNSGLNPACLELEITESSLVHDTGSFIKTLQELKNLGVGLAID 615 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S ++YL P D +K + ++ IAIL++I+ + ++ +IA+ + Sbjct: 616 DFGTGYSSMAYLKDFPVDRLKIDQVFVSNLEAEPSNIAILKAIVALGHSLNMKVIAEGVE 675 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L +GCD +Q H + PL ++ KLL + Sbjct: 676 TAYQKAFLLGIGCDEMQGYHFSKPLHMDTFGKLLSD 711 Score = 85.4 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 4/129 (3%) Query: 398 QGIFSDGERQSLAVLGSGDIVW---DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q + ER A+L + D + +D V + G + + Sbjct: 22 QAKLENSERMLKALLNNLDGMVYCCLYDADWTMVFVGDGCKQLTGYDAQAFVSSEICLEA 81 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 DR+ + + + R E+R+ AD + W+ R P+ + NG++ G Sbjct: 82 ITIPEDREPVNKAIGDAISNGK-RFAVEYRIIHADGRTRWVSERGCPLYDDNGEVEAIEG 140 Query: 515 IANDITEQK 523 D+T++K Sbjct: 141 FMQDVTQRK 149 >gi|302879727|ref|YP_003848291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302582516|gb|ADL56527.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 900 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 143/564 (25%), Positives = 258/564 (45%), Gaps = 14/564 (2%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 F R S + + + D + T I G + G L N Sbjct: 331 FESELRVSATAFETQEGILITDENNVMLRTNAAFTAITGYTNKEAIGQNPRLLSSGRQN- 389 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 +F + + + G + E R + + + + + + + NG + Y+G+ +D+T Sbjct: 390 -ASFYSAMWKAI-NTTGVWEGEIWNRRKNGEIYPEHLTVTAVKDRNGMVTNYVGVLSDLT 447 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++K + E I AF D LT +PNR+ LDRL + + V+ ID+D +K +N Sbjct: 448 QRKAAEEKIENLAFFDPLTKLPNRRLLLDRLKQAMASATRSV-TNGAVLFIDLDNFKALN 506 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAI 635 D G +GD +L + +R+ ++ D ++R G+ F ++L + + + Sbjct: 507 DTYGHPMGDLLLQQVAKRLVSSVRDGDTVSRFGGDEFVVLLEGFDENPLDAASQAETVGE 566 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ P + E T+SIG + + + E++K A++AMY AK G N + F Sbjct: 567 QIFAALRQPYLIGTHEYHGTSSIGATLFNDKQQSIDELMKQADIAMYQAKKEGRNVLRFF 626 Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + ++ DL A+EN + L Y + G EALI+W HP+ G +S Sbjct: 627 DPQMQETIAKRTALEGDLRKAIENHQFQLHYQIQVD-ESRHPFGAEALIRWFHPEHGMVS 685 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +F+ +AEE +I I ++LE I W+ A + +N+++K + Sbjct: 686 PDQFIPLAEESDLILPIGYWVLETACARIQRWQHDAKTSGFVLSVNVSAKQFRQTDFVNQ 745 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q+LI + +PS +KL +ES+++ N E + + L+++G+ +LDDFGT S L YL Sbjct: 746 VQSLIQQYEINPSLLKLELTESMLLDNIEDTIATMSALKELGVKFSLDDFGTGYSSLQYL 805 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S + AI+R+II MA +++ +IA+ + E K L+ G Sbjct: 806 KRLPLDQLKIDQSFVRDIAVDASDRAIVRTIIAMAHSLDLDVIAEGVETEEQQKHLSSKG 865 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C Q P+ L++ Sbjct: 866 CKNFQGYLFGKPVPIEQFETSLRK 889 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 6/196 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG-----LVLIVILIGFTVIQHVLA 392 L + +W + + + +V+ L+ F Q + Sbjct: 10 RLALIYAAFGLLWISLSDRFLASVITDSASLTKFQTYKGFCYVVITSALVYFLAKQTMKQ 69 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + ER A+ G+GD VWDW+ D + I+G W Sbjct: 70 NFLTEEKLHDSEERWKFALEGAGDGVWDWNPQTDEAFFSKRWNEIIGYTEHEFPATGSAW 129 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILR 511 + ++H +D+D +++ ++ R E+R+R D + W++ R + + G LR Sbjct: 130 VAHLHPDDKDRVLSVIQGYLTDSREIYDVEYRIRCKDGSWKWILARGMLVSRDVYGKPLR 189 Query: 512 YIGIANDITEQKKSLE 527 IG +DIT++K E Sbjct: 190 MIGTHSDITQRKVDEE 205 Score = 52.6 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 45/335 (13%), Positives = 105/335 (31%), Gaps = 27/335 (8%) Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGEL--LIWRACSEIALSSSLIIFLF------MY 272 A L +IS+ FL+ ++ + ++ + ++S+L+ FL + Sbjct: 12 ALIYAAFGLLWISLSDRFLASVITDSASLTKFQTYKGFCYVVITSALVYFLAKQTMKQNF 71 Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSF-----YYPMVTASIARITLASIVLYYTYFII 327 L + H F+ ++ + ++ I T + ++ Sbjct: 72 LTEEKLHDSEERWKFALEGAGDGVWDWNPQTDEAFFSKRWNEIIGYTEHEFPATGSAWVA 131 Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 + +R + +I ++ + I + + A + V +I Sbjct: 132 HLHPDDKDRVLSVIQGYLTDSREIYDVEYRIRCKDGSWKWILARGMLVSRDVYGKPLRMI 191 Query: 388 ---QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + + + E+ V + V P + ILG++ Sbjct: 192 GTHSDITQRKVDEELVLKNLEKWKKLFDILPIGVSIVNSKNGIVDFNPSLEAILGISKEG 251 Query: 445 -MHGPIRNW----LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G NW H D D F ++ + +R V+ W + Sbjct: 252 LLQGDYDNWEYLRTDNTH-MDADEFPSL--RAIKEQRVVKDVVIGVKKESGDIIWTSVSA 308 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 P+S + + + DIT++K+ + +A Sbjct: 309 APLSYDSNS---CVTVTTDITKRKQFESELRVSAT 340 >gi|172060668|ref|YP_001808320.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria MC40-6] gi|171993185|gb|ACB64104.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria MC40-6] Length = 860 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 150/574 (26%), Positives = 266/574 (46%), Gaps = 8/574 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 I+++L + + + A + W++ R +P++ ILGL + Sbjct: 121 RIRYLLRAAAAVEKLATTEVSLMHAQALAHVGNWEFQAGRTEGYWSPELYRILGLDAAHA 180 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 L + +++ + + E R+ AD ++ + + Sbjct: 181 PPTFERLLQAVPADEQPLLVQSF-TSLRTEGVPFSLEHRLVHADGTERCVLHQAESGRDP 239 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + I+ GI DITE+K I A D LTG+PNR DR+ + + L Sbjct: 240 DHAII-LRGIVQDITERKMQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQL- 297 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 VMV+D+D++K IND G +VGD +L + R+ ++ D +ARL G+ F ++L++ Sbjct: 298 VAVMVLDLDRFKHINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLA 357 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A + + P L E ++ VT S+G + + + +LK A+ A+Y AK Sbjct: 358 TQADADVIARKILDTFIEPFTLDEHDLHVTTSVGVSLCPTDGANAETLLKTADAALYAAK 417 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + ++ L AV N EL L Y P + L +I G+EALI+ Sbjct: 418 EHGRNCYRFYTRELGARVEEQTILENALHQAVANHELELYYQPKVDLKTGQISGVEALIR 477 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W P G I F+ IAE+ +I I ++L ++WR + PPI I +N++++ Sbjct: 478 WRRPGIGVIPPDRFIPIAEDCGLILPIGEWVLRTACLQAVAWRRE-GHPPIRIAVNLSAR 536 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 ++ ++ + +T +P ++L +ESV+M + + L L+ +G+ L+LDDF Sbjct: 537 QFRQQDVAAMVRTTLEETGLAPDSLELELTESVLMQDCDAIAHTLRELKALGVVLSLDDF 596 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D VK + S + ++ + ++ RSII MA+++ +A+ + E Sbjct: 597 GTGYSSLSYLKDLPIDVVKIDRSFLDDVTTSAEGASLTRSIIAMAESLHMETVAEGVETE 656 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L R C +Q + + P+ + I +L Sbjct: 657 AQLSFLNRHRCHAMQGYYFSHPVTGDEIADMLSA 690 >gi|114049396|ref|YP_739946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. MR-7] gi|113890838|gb|ABI44889.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. MR-7] Length = 1209 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 168/595 (28%), Positives = 285/595 (47%), Gaps = 16/595 (2%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 A+ L+ G +I ++ + + + SG+ + D V Sbjct: 624 AVRLNGSLVTAANGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGIAIMDAHDIIVD 683 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVR 486 I G + + G L DR R LD G Q E R Sbjct: 684 VNSAFTQITGYSRDEIIGKNCRSLEA-ERTDRSIDARVRAALDQ-----TGFWQGEVWDR 737 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D + + + + G + YIG DI+E+K + E I A D+LT +PNR S Sbjct: 738 HKDGYDFPKWLMMSVVRDETGSVSHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLS 797 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 RL T+ + + VM ID+D +K IND LG VGD +L+ + RR+ ++ Sbjct: 798 LQSRLETVFQEAFVSQ-TQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIVSSD 856 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 DI+ARL G+ F ++L S+ + ++A A A+R + + + + + SIG + + + Sbjct: 857 DIVARLGGDEFVVVL-SDTDHDEVAKVAEALRSGLNQTYIIDNKPLHSSPSIGISLFPTD 915 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724 + ++KNA++AMY AK G N+ + F +++ ++R I+ L A+ EL L Y Sbjct: 916 GDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLVTERQQIETGLRQAIARDELRLHY 975 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P I + ++VG+EALI+W HP+ G ++ F+ IAEE+ MI I ++LE+ + Sbjct: 976 QPQIDINTGQMVGVEALIRWQHPELGLVAPDRFIPIAEEIDMIIPIGQWVLEQALAQLAE 1035 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 WR++ + + +N+++ L + + + +++K ++L +ESV M PE++ Sbjct: 1036 WREK-GAKGLRMAVNLSAHQLRKDTIVADIINVLTKHKLPKGALELEITESVAMQYPEQN 1094 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 LL LR+ GI L +DDFGT S LSYL +P D +K + S + AI + Sbjct: 1095 AKLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKDIESDPNDAAISAAT 1154 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 I MA + T++A+ + E + L+ MGCD +Q + + PL L+ ++ F Sbjct: 1155 ISMAHELGLTVVAEGVENEAQLVLLSSMGCDLVQGYYFSKPLAAEDCLRFIERNF 1209 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 7/153 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLA 441 + + + + F + +R + + V I G Sbjct: 515 TMALSKEIARSQTFQATLVESEQRYRTLFDKAPVGHALKRLEDGQFVAINQAFMDITGYT 574 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500 + + I R + L+ RR G Q +R D Q + + Sbjct: 575 LEEL--QALDPWELTPIRYRVSETEQLERLKQTRRYGPYQKHYR--HKDGQMVAVRLNGS 630 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 ++ +NG+ L + I DITEQ++++ + A Sbjct: 631 LVTAANGEQL-ILFIVEDITEQERTVARVNLLA 662 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] gi|133737783|emb|CAL60828.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 944 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 148/648 (22%), Positives = 283/648 (43%), Gaps = 20/648 (3%) Query: 320 LYYTYFIIYHGMKGYERAVLLI---PAWILIFIWFI--GLWMAITKRLDNDIIQPALVGG 374 ++ +H A + A + + + + L Sbjct: 294 VFSVAGQTWHMEVSTPPAWFAMERSNALWAFLAGLFFTAAAAIYLQAVLDRSRRIQLQVD 353 Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR---DRVTTT 431 + I + +A ++ ER A+ S + + Sbjct: 354 ERTAQLRIANEDLSADIAARKRAEYALQLRER---AIEASANSIIIISAEAPHYAIEYVN 410 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 P I G ++ G +L + D+ I + R G R D Sbjct: 411 PAFERITGYSAEEAIGVNLCFLWGTDV-DQPGIEEIRATASAEREG--HAVLRNYRKDGT 467 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 W + I P+ + G + +I + DIT K+ + +D LTG+ NR DRL Sbjct: 468 LFWSDLYIAPVKDDTGTVSHFIVVQYDITATKRYESELEFQTNRDALTGLANRSLMRDRL 527 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 + + + ++ +D+D++K +ND LG GD +L +++ R+ ++ D +AR Sbjct: 528 GQAVSYAHRYGHP-IWILFVDLDRFKFVNDTLGHQAGDILLKAVSARLQAAVRDTDTVAR 586 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 + G+ F +IL ++ + +SIA P+ + E ++ SIG A + + T Sbjct: 587 MGGDEFVLILPERTDAGLSTGIMQRIMESIAQPLTIEGHEFFISGSIGVAVYPADGETPE 646 Query: 672 EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729 E++K+A++AMY AK G N+ + + ++ +R+ I+ DL A+E E L Y P + Sbjct: 647 ELIKHADIAMYRAKETGRNNFQFYTPAMNERALERLHIEGDLRNALEREEFTLHYQPQVD 706 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L +IVG+EALI+W HP+ G + F+ +AEE +I I +++ W++ Sbjct: 707 LRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEENGLIVPIGAWVIRTACLQNKVWQESG 766 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 + + +N++++ +L + + + + +P +++ +ES+VM + +R+ +L Sbjct: 767 FGH-LRMSVNLSARQFAQEDLVDSIAVSLREANLAPEYLEIELTESLVMADVDRAIGILR 825 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907 L+ +G+ L++DDFGT S LSYL P D +K + S + AI+ S+I +A Sbjct: 826 ELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVNDITIDPDDAAIVASVISLAH 885 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ +IA+ + E + L CD IQ + P+ + +LK+ Sbjct: 886 SLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRPVTAEAFSVMLKD 933 >gi|296387080|ref|ZP_06876579.1| hypothetical protein PaerPAb_03054 [Pseudomonas aeruginosa PAb1] Length = 1245 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + ++ + + + V D + + I G + G + L Sbjct: 675 RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + + + R G Q E R + + + I + N G+I ++G+ Sbjct: 734 GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F RL LD + +++ V+ ID+D++ Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG +GD +L ++ R+ + L+ D +ARL G+ F I+L + A Sbjct: 851 KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P E V+AS+G A + + ++KNA+ AMY AK RG + +E + Sbjct: 911 LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++R+ ++ +L A+E EL L Y P + L +VG EAL++W HP +G IS Sbjct: 971 RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I + ++LE + + W+ + P + +N+A L +L E + Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + L+ ++ PSR++L +ES +M E + +L L+++G+ L +DDFGT S LSYL Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G AI R+II + ++++ T+IA+ + E LT GC Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209 Query: 933 DYIQDSHVASPLGFNSIL-KLLKERFPL 959 + IQ ++ PL K LK R P+ Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237 Score = 79.2 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L+ V I++ + + + V + + + V I W+ Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327 Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + +R +P +LG G W +H D + S R Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++R+ AAD + W+ + P+ + G L G+ DITE K + + + Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--AQGRDLLLRGLMIDITEAKLTEQAMR 434 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W L + L L N + G +L VI+ Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448 + + + E+ + A D + + + + G + Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606 Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + DR +++ + + VR + + + + +G Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661 Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534 + + IA DITE++ E + A Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687 >gi|288940064|ref|YP_003442304.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288895436|gb|ADC61272.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Allochromatium vinosum DSM 180] Length = 1069 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 143/562 (25%), Positives = 264/562 (46%), Gaps = 10/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + + + + V D+ + I G + + G + L + Sbjct: 507 RADTRLRQAATVFESTREGVIITDLEGRILDVNRAFTEISGYSEPEVLGRNPSLLRS-NR 565 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D ++ + S G Q E R + + I+ I +++S G Y+G+ D Sbjct: 566 QDHAFYQAMWHSLKT--TGHWQGEIWNRRKSGELYPQILTINTVADSQGRPSHYVGVMTD 623 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I++ K+S + D LT +PNR+ RL L+ + R V+ +D+D++K Sbjct: 624 ISQLKQSEARLEHLVHYDPLTNLPNRRLVQSRLEHALERADRQGG-RVAVLFVDLDRFKT 682 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG GD +L L RR+ E ++ D LARL G+ F ++L + A A ++ Sbjct: 683 VNDSLGHPSGDVLLELLARRLSERVREDDTLARLGGDEFLVLLENLQRPEDAAAVAESLL 742 Query: 639 KSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + P +L +E+ V ASIG + + T ++++++A++AMY AK G N + Sbjct: 743 SLLQQPFHLPNGQELYVGASIGISLYPDDGHTVTDLIQHADVAMYQAKEEGRNTYRFYTP 802 Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S +R+ ++ L A+ + E L Y I + D ++G EAL++W G ++ Sbjct: 803 SLTQTARERLGLEARLHRALASEEFVLHYQAQIDMRDGRLIGCEALVRWHSATEGLVAPD 862 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I + ++L + D SWR + + + +N++ + L +L E + Sbjct: 863 RFIPLAEETGLIVPLGEWVLRQACADCQSWRARGL-TDLTVAVNLSGRQLRSPDLVERVT 921 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T R+KL +ES++M E++ L L+ +G+ L++DDFGT S L+YL Sbjct: 922 RVLRETGLPAERLKLELTESMIMDQREQALERLRALKALGVRLSIDDFGTGYSSLAYLKR 981 Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P D +K + + E + I +II MA+N+ +IA+ + L R GC Sbjct: 982 LPIDELKIDRDFVRDIPEDSSDMEIAATIIAMARNLRLNVIAEGVETPEQCDFLIRQGCT 1041 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 Q PL + ++++ Sbjct: 1042 AGQGYLFGRPLPAEAFAQVMRA 1063 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 7/153 (4%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMH 446 + + + ER +LA+ S I++ + D + +IA +LG + ++ Sbjct: 260 LTQLERERANLRAASERLALALATSPVILYSRRLGPDERPLTWISENIARLLGYSP-TLA 318 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 W +H DR+ L R G + + +R+ A + W+ + + Sbjct: 319 LQPGWWNSRLHPEDREAALDWLREL--DRGGAMVHAYRLIDAQGRVRWIQDEVTLLETDG 376 Query: 507 GDILRYIGIANDITEQKK-SLEGILCNAFQDNL 538 G G +DIT K A D L Sbjct: 377 GTTHEATGAWHDITATKTGEQMRETRLAVLDAL 409 >gi|239826223|ref|YP_002948847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. WCH70] gi|239806516|gb|ACS23581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. WCH70] Length = 951 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 146/580 (25%), Positives = 272/580 (46%), Gaps = 18/580 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSG-------DIVWDWDIVRDRVTTTPDIATIL 438 + Q V+ + ER + V S DIV+ D+ + P IL Sbjct: 375 MFQGVMTLANLMSTSSREMERLRVHVQISQSLFEHNTDIVYSTDLHGNFTNVNPAFEKIL 434 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + L Y+H ND + + E + + I+ Sbjct: 435 GYTKEEILHTNA--LKYMHPNDVPRVSRHFYRALRGKIQYYNLE--IPTKSGETLLFQIK 490 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 P+ +G + GI DITEQKK+ E I A+ D T +PNR F++ + L+ + Sbjct: 491 NVPII-VDGKKVGIYGIGRDITEQKKAEEKISYLAYYDPDTHLPNRTKFMEIIDEQLEKA 549 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 N + V+ ID+D++K +ND +G GD++L + +RI +L L R G++F Sbjct: 550 KQ-KNRKLAVVFIDLDRFKLVNDSIGHYAGDEILKQVVQRIQHVLPAGAYLGRFHGDKFC 608 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L +S + A + K + PI +E +T SIG + + + + +LKNA+ Sbjct: 609 LLLTERTDSEGVFKTAAHISKEVMKPIVYENKEFFITISIGISFYPNDGVDKHSLLKNAD 668 Query: 679 LAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +A+ AK GGN ++ + +++ R+ ++ L A+EN E +L Y PII + IV Sbjct: 669 IALNKAKQSGGNRIQFYSAKMNEETLYRLEMERYLRKALENQEFFLCYQPIIDIHKGVIV 728 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HPK G + +EF+ +AEE +I I ++L + W+ Q +F+ Sbjct: 729 GNEALIRWRHPKLGLVRPNEFISLAEETGLIHEIGRWVLVTACKQTKKWQ-QLWNQQLFV 787 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++++ + ++ + ++ SP+ + L +E+ ++ N S ++ L+++G+ Sbjct: 788 SVNVSARQFQHEGFIDDVKQALEQSQLSPNCLHLELTENSMLRNLHYSIQVMKELQQLGV 847 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914 + +DDFG+ + SYL +P + +K + S + IAI+++II M + + Sbjct: 848 GIAIDDFGSGYASFSYLKNLPVNILKIDRSFVEQMHTNSSDIAIVKAIITMGHGLGLKTV 907 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + ++ L + C + Q + P+ + + Sbjct: 908 AEGVETVEQLELLKMLHCHHAQGYALYRPVTAEELSTYMT 947 >gi|253999561|ref|YP_003051624.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253986240|gb|ACT51097.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 1126 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 141/582 (24%), Positives = 285/582 (48%), Gaps = 12/582 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + V+ S+ +D + + + D + I G Sbjct: 543 AELVGVMLDITASKAAEADLRLARQVFDNTAEGIVITDPAFRVLEVNQAYQQITGYDKEE 602 Query: 445 MHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + + + +H + + + R G+ E R + + + I ++ Sbjct: 603 IIGKLPSVMQAGLHE---AAYYEGIWQTLR-REGQWVGEIWNRRKSGESYPEWLSISQVA 658 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ G + Y+ + DIT++K S E + A D LT +PNR +R+ L + + Sbjct: 659 DAKGSVQNYVAVFTDITQRKLSEERLQFLANHDALTHLPNRALLQERIDQALFRAQRN-K 717 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V+ ID+D++K IND LG GD +L +R+ E L+ D +AR G+ F +++ Sbjct: 718 TAIAVLFIDLDRFKIINDTLGHQTGDMLLQEAAKRLKECLRETDTVARQGGDEFVVLVED 777 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + A + ++A P L+ RE+ ++ASIG + + + ++ +LK+A+ AMY Sbjct: 778 CGDTDYLNTIARKIMATLAQPFILVGRELFISASIGISVYPDDGLDTASLLKHADAAMYR 837 Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + ++ + + ++ +L AVE +E L Y P + L ++I+G EA+ Sbjct: 838 AKESGKNTFRFYAAEANTNSVELLTLENNLRRAVERNEFVLHYQPKVDLRSQKIIGAEAV 897 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G +S +F+ +AEE +I I +++ R + W+ + + +N++ Sbjct: 898 VRWQHPELGMLSPMQFIPLAEETGLIIDIGAWIMRESCRQAVEWQQLTGQ-NVRVAVNLS 956 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ D L + + ++++ +P ++L +ES++M N ER+R +L +G + +D Sbjct: 957 ARQFRDETLRQTIADALTESGLTPDCLELEITESMIMHNAERAREVLQHFHDLGAHVLID 1016 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S YL + P D++K + S + +AI ++II MA +++ ++A+ + Sbjct: 1017 DFGTGYSSFGYLKHFPIDSLKIDRSFVRDIPDDVDDMAITQAIIAMAHSLQIKVVAEGVE 1076 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + + L + GCD IQ + PL + +++LK + P+++ Sbjct: 1077 TQEQLAFLKKQGCDQIQGFLFSEPLHSHDFVRMLKLQ-PMLR 1117 Score = 83.5 bits (205), Expect = 2e-13, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 3/153 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 T+I + + + + V IVW + + +LG Sbjct: 417 VTLIIDISSRKKAEAELVKSQQDYRELVESVQAIVWRAIPGGKFTFVSKEAEALLGYPLA 476 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 W+ IH +DRD + +++R+ AAD + WM ++ + Sbjct: 477 QWTTDPGFWVDKIHPDDRDWVVE-YCRTESLKLQSFDFDYRMIAADGRVVWMKDIVKVIP 535 Query: 504 N-SNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 N SN +G+ DIT K + E L A Q Sbjct: 536 NMSNTRPAELVGVMLDITASKAA-EADLRLARQ 567 Score = 81.2 bits (199), Expect = 9e-13, Method: Composition-based stats. Identities = 45/332 (13%), Positives = 101/332 (30%), Gaps = 28/332 (8%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 + R + + FA+ L ++ + +V + L S + + S ++F Sbjct: 115 IRLRDFLTLVFFAVGISPLV-SALINVLMLVVVGADTTALANSFTNSWLEDAFSYLLFTP 173 Query: 271 MYLHWNRWHA-KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI--VLYYTYFII 327 L + + + + +A L S M+ A ++ I+ Sbjct: 174 AVLAFYHYEPIRWSWARVGEALILAGLVVFSCLLTMLGAMDKSMSQLMQPQAFMLFPLIM 233 Query: 328 YHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 + ++ A L + + +W + +D Q L+ + +++L V Sbjct: 234 WAALRFHQRGAALSVLFVAMTALWGGAHGL---GTFAHDFAQSNLLDYWMYVLVLSSTGV 290 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGS----------GDIVWDWDIVRDRVTTTPDIAT 436 A + G R + + V V + Sbjct: 291 -----ALSGLNAGRIRSEARLKEQLDTYDALLHAQADVNEGVAIIH-RGKIVYGNDALWR 344 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I G + G + ++ IH +DR I + +YE + + + Sbjct: 345 IGGYSPGDI-PLGSDFFSLIHPSDRKRVSEIYQQRLQDMDVPTRYEALGLGKNGRAIHIE 403 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 I + + R + + DI+ +KK+ Sbjct: 404 IAAAQYRDDS---QRIVTLIIDISSRKKAEAE 432 >gi|254243669|ref|ZP_04936991.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126197047|gb|EAZ61110.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 1242 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + ++ + + + V D + + I G + G + L Sbjct: 672 RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 730 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + + + R G Q E R + + + I + N G+I ++G+ Sbjct: 731 GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 788 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F RL LD + +++ V+ ID+D++ Sbjct: 789 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 847 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG +GD +L ++ R+ + L+ D +ARL G+ F I+L + A Sbjct: 848 KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 907 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P E V+AS+G A + + ++KNA+ AMY AK RG + +E + Sbjct: 908 LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 967 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++R+ ++ +L A+E EL L Y P + L +VG EAL++W HP +G IS Sbjct: 968 RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1027 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I + ++LE + + W+ + P + +N+A L +L E + Sbjct: 1028 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1086 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + L+ ++ PSR++L +ES +M E + +L L+++G+ L +DDFGT S LSYL Sbjct: 1087 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1146 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G AI R+II + ++++ T+IA+ + E LT GC Sbjct: 1147 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1206 Query: 933 DYIQDSHVASPLGFNSIL-KLLKERFPL 959 + IQ ++ PL K LK R P+ Sbjct: 1207 EQIQGFVLSPPLPAELFASKFLKPRQPI 1234 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L+ V I++ + + + V + + + V I W+ Sbjct: 265 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 324 Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + +R +P +LG G W +H D + S R Sbjct: 325 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 382 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++R+ AAD + W+ + P+ + G L G+ DITE K + + + Sbjct: 383 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 431 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W L + L L N + G +L VI+ Sbjct: 484 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 543 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448 + + + E+ + A D + + + + G + Sbjct: 544 ITHLVETQELLRISEEKFANAFHAYPDGLLISHLEDGTLIDVNEGFTRLTGYRRDEVISR 603 Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + DR +++ + + VR + + + + +G Sbjct: 604 STLELGLWVDTEDRKRLISLVRHHTLTQG----FIAPVRDRNGGIRQCEMSAHRI-SIDG 658 Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534 + + IA DITE++ E + A Sbjct: 659 E-DCVLTIARDITERQLMQEKLQQAAT 684 >gi|152987701|ref|YP_001346112.1| hypothetical protein PSPA7_0717 [Pseudomonas aeruginosa PA7] gi|150962859|gb|ABR84884.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 1245 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 162/573 (28%), Positives = 276/573 (48%), Gaps = 10/573 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 Q + ++ + + + V D + + I G + G Sbjct: 670 RDVTERQLMEEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGQSPR 729 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L +DR + + + R G Q E R + + + I + N G+I Sbjct: 730 LLSS-GQHDRAFYLAMWNQL--EREGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITH 786 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 ++G+ DI+ K + + A D LTG+PNR F RL LD + +++ V+ I Sbjct: 787 FVGVFADISTLKYAQARLDYQAHHDPLTGLPNRLLFEHRLDHALDEA-REESRPGAVLFI 845 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG GD +L ++ R+ + L+ D +ARL G+ F I+L + Sbjct: 846 DLDRFKHINDSLGHPTGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAE 905 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + + P E V+ASIG A + + ++KNA+ AMY AK RG + Sbjct: 906 HVARKLLNAFTAPFQADGHEFFVSASIGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSR 965 Query: 692 VESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 +E + ++R+ ++ +L A+E EL L Y P + L +VG EAL++W HP + Sbjct: 966 IEYYTRELTFLATERMALETELRRALERDELLLYYQPKLSLESGLLVGAEALVRWHHPLF 1025 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS F+ +AE+ +I + ++LE + + W+ + P + +N+A L + Sbjct: 1026 GEISPERFIPLAEDCGLILPLGDWVLEHACQQMGDWQK-LHAPFGPLSVNLAGAQLGQPQ 1084 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E ++ L++++ PSR++L +ES +M E + +L L+ +G+ L +DDFGT S Sbjct: 1085 LIERLRQLLAQSGLEPSRLQLEITESFIMNQTEEALGVLRGLKDLGVQLAIDDFGTGYSS 1144 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL +P D +K + S + G AI R+II + ++++ T+IA+ + E L Sbjct: 1145 LSYLKRLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFL 1204 Query: 928 TRMGCDYIQDSHVASPLGFNSIL-KLLKERFPL 959 T GC+ IQ ++ PL K LK R P+ Sbjct: 1205 THEGCEQIQGFVLSPPLPAELFASKFLKPRQPI 1237 Score = 84.2 bits (207), Expect = 9e-14, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 10/183 (5%) Query: 349 IWFIGLWMAITKRLDND-IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + L I L+ V +++ + + + V Q + + Sbjct: 255 VGGLLDRRPAWGALARYGIPVALLILVSVAVLLAMNRRLRREVSRRRQLEQDLRDSEQHY 314 Query: 408 SLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 V I W+ + +R +P +LG W +H +D ++ Sbjct: 315 RGLVESLNAIAWEMRLTENRFTYVSPHAERLLGYPLAEWL-EPGFWQRTLHPDDAEH--- 370 Query: 467 ILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 +D + + +++R+ AAD + W+ + + G L G+ DITE K Sbjct: 371 AIDYCLSESQAGRDHSFDYRMLAADGRVVWIRDLVTLI--GQGHELLLRGLMIDITETKH 428 Query: 525 SLE 527 + + Sbjct: 429 TEQ 431 Score = 58.8 bits (141), Expect = 5e-06, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 8/153 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLAS 442 VI+ + + + E+ + A S D + + + + + G Sbjct: 541 VVVIRDITRLLETQELLRISEEKFANAFHASPDGLLISRLEDGTLIDVNEGFSRLTGYRR 600 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + L + DR +++ + R + + Sbjct: 601 DEVTSRSTLELGLWVDPEDRKRLMSLVRHHTLTQGFTAPVLIR----NGSIRQCEMSAHQ 656 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + S G + IA D+TE++ E + A Sbjct: 657 I--SIGGEDCVLTIARDVTERQLMEEKLQQAAT 687 Score = 39.9 bits (92), Expect = 2.0, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 49/167 (29%), Gaps = 23/167 (13%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILG 439 L+ ++ + T + Q + ++ + D+V + + +G Sbjct: 414 LLLRGLMIDITETKHTEQALRLSEQKFASVFHHCPDMVVLANGADGRFLAVNSTFEQQIG 473 Query: 440 LASGSMHGPIRNWLPY-----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +A+ G L + +L+ E +R D Sbjct: 474 IAATEALGKTATELGIWGAPGLGP-------QVLEKLAQGNLA--NLEVPLRRRDGDTFS 524 Query: 495 MIIRIRPMSNSNGDILRYIGIANDIT------EQKKSLEGILCNAFQ 535 ++ + ++ + + + DIT E + E NAF Sbjct: 525 ALLSAQHVT-LDQRPALVV-VIRDITRLLETQELLRISEEKFANAFH 569 >gi|257093757|ref|YP_003167398.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046281|gb|ACV35469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1003 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 187/912 (20%), Positives = 365/912 (40%), Gaps = 35/912 (3%) Query: 63 FTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDL 122 T ++ +E+ S+ + + ++ + F+ D+ Sbjct: 68 DTVSEPRAGCHALELPDLSLTKPARAFQIKIEREQFAAGSPIVYLQEPIAQFFIVFATDV 127 Query: 123 GSRRIISVTPSEGFSLDRIPNSDSDVFRIT-INPGAVVTFIMEISTPNLPQIYLWEPNFY 181 S++ R S R+ + A +T I++ P I L + + Sbjct: 128 NGCPWFSISGRGLPFAKRDIVSPFPYARLPALARDATITAIVQDYKAIRPWIMLADETSF 187 Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241 + G G+ ++ + F S + + + ++ +FG S Sbjct: 188 VRDNAVLWVALGAASGILLMMIVVALGFDAYAGSRVALAYAFYCVALQVWLVQNFGIGSA 247 Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301 V G + ++++ ++ L + + +V + A+ F S Sbjct: 248 FVPFWPGPE-YFPILQAVSVAGVVLGIGCAVLEFLQLRGRVRAAIGGFVVLSALCFLGSA 306 Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361 ++ + A L+ + + ++ G L + ++ Sbjct: 307 WHATGYRAGAA-VLSVLAVATMVLLVRGVFSGDASLRLFTLGLGATMVGGGVQAFSVVG- 364 Query: 362 LDNDIIQPALVGGLVLIVIL--IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 + + L + L F + ++ + + +Q+ + D++ Sbjct: 365 --SGLEVGRLAAFAFPLGSLCQAAFWLAALIIRLRSEHRELHELEGKQAAIMWAMPDLIL 422 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D + AT + + G + + R ++ + G L Sbjct: 423 VIDRQGICLDYKQPYATRFFVTGDELLGK--DVSAVLPSATAGTIRQGIERALHQ--GDL 478 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 Q F + H RI P + + + DIT QK S E I A+ D LT Sbjct: 479 QSVFLDLPVEGSMHHYEARIAP-----HGPDKVVVVVRDITLQKHSEEKIRRLAYFDTLT 533 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNRQSFL+RL L + ++ R ++ +D+D +K+IND LG + GD +L ++ R+ Sbjct: 534 GLPNRQSFLERLDRELLRARRTNH-RMALLFLDLDGFKRINDTLGHSAGDCLLQTVADRL 592 Query: 600 GELLKFPDILAR------------LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 E L+ +AR L G+ F ++L + A +++ + P + Sbjct: 593 QEKLRAGAFIARPALDESSLHFARLGGDEFTVVLPDVDTVETACLIAQRIQELLGRPTLI 652 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 E+EI VT+SIG A + ++ +LK+A+ AMY+AK +G N+ + + + + Sbjct: 653 GEQEIAVTSSIGIALFPDDGADAATLLKHADTAMYYAKEQGRNNWQLYDRTLTTRTTARL 712 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + D+ +E E L Y P + D IVG+EALI+W HP+ G +S + F+ +AEE Sbjct: 713 ALEGDIRKGLERGEFRLFYQPQVSADDGTIVGVEALIRWQHPQQGLVSPARFIPVAEESG 772 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++L R + W+ P + +N++++ L + + A+I T + Sbjct: 773 LIVPIGEWVLTAACRQVRQWQQSGVPVP-RVAVNVSARQLGAAGFLDTVAAIIVATGIAA 831 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 R++L +ES++M + L RLR +G+ ++DDFGT S LSY+ P T+K + Sbjct: 832 DRLELELTESILMDPEAKRIKGLSRLRAMGVHFSIDDFGTGYSSLSYIKRFPIGTLKIDQ 891 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + G I +II MA+++ ++A+ + + L R C +Q + P Sbjct: 892 SFVHGLPQDADDAGITTAIISMARSLNLEVVAEGVETREQLAFLQRALCPKLQGYLFSYP 951 Query: 944 LGFNSILKLLKE 955 L + + +L+ Sbjct: 952 LPPDEMEAILRR 963 >gi|324324413|gb|ADY19673.1| sensor histidine kinase (sporulation kinase), C-terminal protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 926 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 147/571 (25%), Positives = 276/571 (48%), Gaps = 14/571 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446 + + Q + + E L + +G+ ++ D+ + P A++LG + Sbjct: 366 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 422 Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + I + + D + + FR D + I + Sbjct: 423 GKPSSMVFNGIEAGKKKQVASGCDRNW-NLYDKTEQFFR---KDQSCFPVEYVISSIK-E 477 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 +I+ + DIT++K+ E I +A+ D+LT +PNR DRLT L + + Sbjct: 478 GNEIVGEVVTFKDITQRKQMEEEIKYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 536 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND LG + GD +L + R+ + ++R G+ F I L + Sbjct: 537 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 596 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + ++ + S + P L++ EI + SIG + + + T+ ++KNA+ AMY +K Sbjct: 597 SEKEVLKVVNCVIDSFSRPFQLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 656 Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G+ F + + + + ++ DL A+E EL + Y P I +I G+EALI+ Sbjct: 657 EISGSSYHFFSEGMDTRTFESIKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 716 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+H + G I +F+ IAEE +I I ++L+ R + W DQ P I + +N++++ Sbjct: 717 WNHREHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 775 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 ++L ++ ++ + SP I+L +E++++ N E + + +L+ +GI+L +DDF Sbjct: 776 QFEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 835 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 GT S L YL +P T+K + S + T+ AI +II +AKN+ +IA+ + + Sbjct: 836 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 895 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 ++ L+ C +Q + P+ I KL K Sbjct: 896 VEFLSARNCYLMQGYFFSRPMAAEDIEKLFK 926 >gi|46202515|ref|ZP_00053091.2| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 778 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 150/573 (26%), Positives = 277/573 (48%), Gaps = 11/573 (1%) Query: 390 VLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + +Q + + L A+ + V D + G + + G Sbjct: 209 AVFSRDVTQIHQRRLQLRKLETALEQAPVAVMITDAQGAIEYVNRAFVLVSGYSEDEVLG 268 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + + + Q E RA D W I P+ + +G Sbjct: 269 RNPRLLKSG--ETVASVFRDMWQCLSG-GATWQGELCNRAKDGSLFWEYATISPIRDDDG 325 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 Y+ + +IT++K++ + ++ A D LTG+PNR DR+ ++++ + R Sbjct: 326 VTTHYMAVKENITQRKETEQQLVHQATHDTLTGLPNRLLLEDRVHHAIEVAKREGR-RIG 384 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 +M +D+D++K +ND LG GD +L + R+ L+ D +ARL G+ F ++L +S Sbjct: 385 LMFLDLDRFKIVNDSLGHVAGDQLLKVVADRLRHTLRRSDTVARLGGDEFVVVLTHFQSS 444 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++A+ A + ++ P+ L ++ V ASIG A + + ++K+A+ AMY AK + Sbjct: 445 SELAEVAEKISTALDEPVELSGHKVHVGASIGIALFPEDGDDFNSLMKDADTAMYRAKQK 504 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + ++ DR+ ++E L A+ E L Y P + L +EALI+W+ Sbjct: 505 GRNTFCFYDSNMNDEALDRLKLEEALRHALVRGEFQLFYQPQVDLQTGVTSSVEALIRWN 564 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 P+ G +S + F+ IAEE +I I ++LE R + WR+ I + +N++ + Sbjct: 565 SPERGQVSPALFIPIAEESNLISMIGWWVLEESCRQLAVWREAGL-TGIKVAVNVSGRQF 623 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 L++ L E + L+++ PS++++ +ES VM P+R+ L RLR+IGI +++DDFGT Sbjct: 624 LNHALVECISDLMTQYGVLPSQLEIELTESTVMAEPDRAIEQLTRLREIGIQVSVDDFGT 683 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL +P +T+K + S + AI+ +I+ +A ++ +I+A+ + E + Sbjct: 684 GYSSLSYLKKLPLNTIKVDRSFVRDVNNQSDNAAIVSAILGLADALDMSIVAEGVETEGE 743 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L GC +Q A P+ + ++ Sbjct: 744 EIHLKEAGCIKVQGFRYAKPMPAEQLATWMQRE 776 Score = 41.5 bits (96), Expect = 0.75, Method: Composition-based stats. Identities = 41/363 (11%), Positives = 104/363 (28%), Gaps = 64/363 (17%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + L + I V Q I + S D + + Sbjct: 67 GTSFWSVLTIRSASLNGEAVNLAWIYDVSKRKQAEQTILDGKALIRAMLDSSTDGIVLVN 126 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + ++ S + G + ++ + + + RRG + Sbjct: 127 AAGTILALNAAASSFFEKKSDDLPGK--SIWDHLP----EAVTSSM------RRGVERVL 174 Query: 483 FRVRAADNQF----HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 R + + I + + N++G+ R + D+T+ + Sbjct: 175 ARGETVEGHYAIGARLFDIHMHLVDNASGNHDRVAVFSRDVTQIHQ-------------- 220 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-YKKINDVL----GIAVGDDVLV 593 R+ L +L T L+ + VM+ D + +N G + D+VL Sbjct: 221 -----RRLQLRKLETALEQA------PVAVMITDAQGAIEYVNRAFVLVSGYSE-DEVLG 268 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 R + + +A + + + + ++ + A + + Sbjct: 269 RNPRLLKS----GETVASVFRDMWQCLSGGATWQGELCNRAK-------------DGSLF 311 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713 + +T+ M + + H + + +R+++++ + Sbjct: 312 WEYATISPIRDDDGVTTHYMAVKENITQRKETEQQLVHQATHDTLTGLPNRLLLEDRVHH 371 Query: 714 AVE 716 A+E Sbjct: 372 AIE 374 >gi|239827282|ref|YP_002949906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. WCH70] gi|239807575|gb|ACS24640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. WCH70] Length = 568 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 141/549 (25%), Positives = 270/549 (49%), Gaps = 12/549 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468 S + + D + P + G ++ + G R +H D+ ++ + Sbjct: 21 IFEYSNESIIITDAQNRILFVNPAFEIVTGYSAEEVIGKNPRILQSGMH--DKQFYKKMW 78 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + + G + E + D + + + I + + G++ Y+ + +DITE K+++E Sbjct: 79 NDIKQH--GVWKGEIWNKRKDGELYLEWLTISVVKDQKGNMTNYVAMFSDITEHKRNVEQ 136 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LT +PNR RL +I+ +S + ++ +D+D++K IND LG VG Sbjct: 137 LTRLALYDTLTNVPNRYLLEKRLESIIRMSKKHNQ-SFALLFLDLDRFKNINDTLGHRVG 195 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L +R+ +L+ D +AR G+ F IIL + + + A A + +S+ P Sbjct: 196 DMLLKETAQRLKRMLRKQDTIARFGGDEFVIILPNLKHIREAAYMAEKIVESLKRPFCFN 255 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706 +EI ++ SIG + + +++ A+ AMY AK G N + + Sbjct: 256 HQEIYISTSIGISVYPYDGTDKETLIRMADRAMYQAKKNGRNQYALYHAGMHGNGKQLFQ 315 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A+E E L Y P + + ++I +EALI+W+HP+ G IS F+ +AEE + Sbjct: 316 LETALRKALERGEFELYYQPQLDIKTKQIRAVEALIRWNHPEKGFISPGMFIPLAEESGL 375 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I+ +++ + + + + + + INI+ + + +Q I +P Sbjct: 376 ITPISDWIMMQACEHLKQLQLRFPY--VKMSINISPIYFQQIDFLKKLQKTIESVNVNPR 433 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 I+L +ES VM + E+S L +L+ +G+S+ +DDFGT S LSYL P D +K + S Sbjct: 434 LIELELTESAVMPHAEQSVERLTKLKTMGMSIAIDDFGTGFSSLSYLHRFPIDILKIDRS 493 Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + ++ AI+++II MA +++ ++A+ + + + L + CD++Q +V+ PL Sbjct: 494 FTKQLSRYQQDSAIVKAIIMMAHSLQIRVVAEGVETKKQYQILEKQSCDFVQGYYVSKPL 553 Query: 945 GFNSILKLL 953 + + + L Sbjct: 554 SISELYEFL 562 >gi|209524005|ref|ZP_03272557.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Arthrospira maxima CS-328] gi|209495677|gb|EDZ95980.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Arthrospira maxima CS-328] Length = 1092 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 151/561 (26%), Positives = 254/561 (45%), Gaps = 15/561 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP---YIHI 458 + S A S + D D P I G +G + G L Sbjct: 538 DQLKMFSRACDQSPVSIVITDSEGDIQYVNPKFEEITGYKAGEVIGQNPRILKSGYTTEP 597 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + ++ EF + + + W I PM + G I +I + D Sbjct: 598 E----YDVLWRQITSGKQ--WSGEFHNKKKNGELFWEHASICPMRDEEGYITHFIAVKED 651 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT+QK + E + A D LT +PNR DRL + + + VM ID+D +K Sbjct: 652 ITQQKHNEEILAHQANYDALTDLPNRTLIFDRLRQAITEAQVH-HSNVAVMFIDLDHFKN 710 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L R+ ++ D + RL G+ F +I+ ++ ++ A + Sbjct: 711 INDTLGHELGDFLLKEAGMRLRGCIRKTDTVGRLGGDEFLLIIPKLDDLVQAEYIANQVL 770 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P NL E ++ASIG AS+ S +++NA+ AMY AK G N F + Sbjct: 771 DVLGEPFNLCGEEAFISASIGIASYPQDGKNVSTLVRNADTAMYAAKQEGRNVFAFFTQN 830 Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + I + L A+ +EL +VY P I L +IVG EAL++W +P+ GNI + Sbjct: 831 MNDEAQSRIIIENQLRHAISRNELSVVYQPFIHLNTSQIVGAEALMRWYNPELGNIRPDQ 890 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE +I + ++L + +++ +W Q N +++ +N++ + L L + Sbjct: 891 FIAIAEESRLIVDLGEWILSQACQEVANWHQQGNN-GLWVAVNMSPRQLRTPNLVNVIIE 949 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 I+ S ++L +E ++ + L+ +L + I L +DDFGT S LSYL Sbjct: 950 AIANNGLSSDCLELEITERSLVEEVPGVQSLIKQLNHLKIRLAIDDFGTGYSSLSYLKRF 1009 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PF +K + S ++ + IA+++++I MA + ++A+ I + L GCDY Sbjct: 1010 PFSVLKIDKSFISDLPDDQDAIALVKTMITMAHGLGLVVVAEGIETTAQLDFLCNQGCDY 1069 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + PL L+ Sbjct: 1070 GQGYLFSKPLPPAQFRAYLQR 1090 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 1/103 (0%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W ++ + + + ILGL L IH+ D + + + ++ Sbjct: 317 GSWCLNMNTGEMIVSEQLYHILGLTPQPTSINFEQLLNQIHVEDLYGWVQNYATSLFVKQ 376 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 +R+ D+ HW+ P+S+ +G + I I Sbjct: 377 N-YSLNYRIIQPDSSVHWVSQESTPVSDRHGQVTHIISTIKAI 418 Score = 51.5 bits (122), Expect = 8e-04, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 44/168 (26%), Gaps = 23/168 (13%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 + + +I + + V + + R + S + + + Sbjct: 398 STPVSDRHGQVTHIISTIKAIENPEIVNPSITAEAALRESEARLRTIISTSTNGLVVVNR 457 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + P + G + + G + E Sbjct: 458 KGRALFINPAAEALFGRPASQLEGELIG---------IPLVTKE------------STEL 496 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + D Q + +R+ +S Y+ D+T+ KK+ + + Sbjct: 497 EILRQDGQLKIVRMRVVEISWE--QETAYLASLTDVTDFKKTEDQLKM 542 Score = 41.1 bits (95), Expect = 1.1, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 16/123 (13%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 S ER + ++ + + L + + + + WL Sbjct: 188 ASQMER---ILNAINLPIFILNQEHKIIFANRKAHETL-VVNSQIPPELETWLRERSP-- 241 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + E + DN W +R+ P+ + +G R I I DIT Sbjct: 242 ---------QIADTNISEIVAEIPI-TKDNITEWFCLRLYPIDSQDGSDFRAIAICEDIT 291 Query: 521 EQK 523 + K Sbjct: 292 DSK 294 >gi|296132513|ref|YP_003639760.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola sp. JR] gi|296031091|gb|ADG81859.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermincola potens JR] Length = 706 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 145/556 (26%), Positives = 258/556 (46%), Gaps = 11/556 (1%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + I ++ + + V + + + A G + R + Sbjct: 152 ESIQNEKIKYLTIFESLPNPVIILNSKNEIESYNHAAAETFG---DLLMPSARGRKLLL- 207 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + + F + +E + + + + I++ M + I Sbjct: 208 -DAFPWLEQEMKDFAAGTANQYFFEKELNSKTAKSY-FEIKLMRMFDIGDKSRYTIIFFY 265 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+K + E I A+ D LTG+PNR F DRLT L + + +M +D+D++K Sbjct: 266 DITERKMAEEAIKHQAYHDPLTGLPNRILFKDRLTQTLAQAKRSKQM-LALMFLDLDRFK 324 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG A GD L +++R+ ++ D +ARL G+ F ++L N+ A + Sbjct: 325 NINDTLGHATGDQFLQGISKRLTGCIRSGDTVARLGGDEFTLLLPQINHVEDAIKVAQKI 384 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFR 696 + P L E +T SIG A + + + ++K+A+ AMY AK RG N+ S Sbjct: 385 IDTFKKPWILGGHEFYITTSIGIALYPNDGEDAETLMKHADTAMYRAKERGNNYQLYSPS 444 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ +R+ ++ L A+E E + Y P I EI+G+EAL++W HP+ G I ++ Sbjct: 445 MNEKAINRLEMEGALRKALEREEFTVYYQPQINTDTGEIIGMEALVRWRHPERGIIPPAD 504 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I + ++L R W+ PP+ + +N+++ +L + + Sbjct: 505 FIALAEETGLILPLGEWVLRTACRQNKEWQMA-GYPPLRVTVNLSASQFQQQDLADRVSR 563 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P ++L +ES+ M + + L +LR +GI + +DDFGT S LSYL I Sbjct: 564 ILKETGLDPQWLELEITESIAMKDVAFTIKTLRQLRDMGIKIAIDDFGTGYSSLSYLKQI 623 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + S + + +I +II MA+N++ +IA+ + E + L + CD Sbjct: 624 PSHTLKIDKSFVRDIAKNTEDGSIASAIIAMAQNLKLKVIAEGVETEEQLAFLKKQKCDE 683 Query: 935 IQDSHVASPLGFNSIL 950 IQ P+ Sbjct: 684 IQGFLFGKPVPPQEFE 699 >gi|171317409|ref|ZP_02906602.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5] gi|171097426|gb|EDT42267.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5] Length = 860 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 152/574 (26%), Positives = 267/574 (46%), Gaps = 8/574 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 I+++L + + + + A + W++ R +P++ ILGL + Sbjct: 121 RIRYLLRAAAAVEKLATTEVSLTHAQALAHLGNWEFQAGRTDGYWSPELYRILGLDAAHA 180 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 L + +++ + + E R+ AD H ++ + + Sbjct: 181 PPTFERLLQAVPADEQPLLVQSF-TSLRTEGVPFSLEHRLVHADGTEHCVLHQAESGRDP 239 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 N I+ GI DITE+K I A D LTG+PNR DR+ + + R Sbjct: 240 NHAII-LRGIVQDITERKMQQGRIEYLANHDALTGLPNRNLLGDRMEQAMSQARRTGQ-R 297 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 VMV+D+D++K IND G +VGD +L + R+ ++ D +ARL G+ F ++L++ Sbjct: 298 VAVMVLDLDRFKHINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLA 357 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A + + P L ++ VT S+G + + + +LK A+ A+Y AK Sbjct: 358 TQSDADAIARKILDTFVEPFTLDGHDLHVTTSVGVSLCPTDGADAETLLKTADAALYSAK 417 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + ++ L AV N EL L Y P + L +I G+EALI+ Sbjct: 418 EHGRNCYRFYTRELGARVEEQTILENALHQAVANHELELYYQPKVDLKTGQISGVEALIR 477 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W P G I F+ IAE+ +I I ++L ++WR PPI I +N++++ Sbjct: 478 WRRPGIGVIPPDRFIPIAEDCGLILPIGEWVLRTACMQAVAWRRD-GHPPIRIAVNLSAR 536 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 ++ ++A + +T +P ++L +ESV+M + + L L+ +G+ L+LDDF Sbjct: 537 QFRQQDVAAMVRATLEETGLAPDSLELELTESVLMQDCDAIAHTLRELKALGVVLSLDDF 596 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D VK + S + ++ + ++ RSII MA+++ +A+ + E Sbjct: 597 GTGYSSLSYLKDLPIDVVKIDRSFLDDVTTSAEGASLTRSIIAMAESLHMETVAEGVETE 656 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L R C +Q + + P+ + I +L Sbjct: 657 AQLSFLNRHRCHAMQGYYFSHPVTGDEISDMLSA 690 >gi|113972148|ref|YP_735941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. MR-4] gi|113886832|gb|ABI40884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. MR-4] Length = 1209 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 168/595 (28%), Positives = 284/595 (47%), Gaps = 16/595 (2%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 A+ L+ G +I ++ + + + SG+ + D V Sbjct: 624 AVRLNGSLVTAANGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGIAIMDAHDIIVD 683 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVR 486 I G + + G L DR R LD G Q E R Sbjct: 684 VNSAFTQITGYSRDEIIGKNCRSLEA-ERTDRSIDARVRAALDQ-----TGFWQGEVWDR 737 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D + + + + G + YIG DI+E+K + E I A D+LT +PNR S Sbjct: 738 HKDGYDFPKWLMMSVVRDETGSVSHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLS 797 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 RL T+ + + VM ID+D +K IND LG VGD +L+ + RR+ ++ Sbjct: 798 LQSRLETVFQEAFVSQ-TQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIVSSD 856 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 DI+ARL G+ F ++L S+ + +A A A+R + + + + + SIG + + + Sbjct: 857 DIVARLGGDEFVVVL-SDTDHDSVAKVAEALRSGLNQTYIIDNKPLHSSPSIGISLFPTD 915 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724 + ++KNA++AMY AK G N+ + F +++ ++R I+ L A+ EL L Y Sbjct: 916 GDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLVTERQQIETGLRQAIARDELRLHY 975 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P I + ++VG+EALI+W HP+ G ++ F+ IAEE+ MI I ++LE+ + Sbjct: 976 QPQIDINTGQMVGVEALIRWQHPELGLVAPDRFIPIAEEIDMIIPIGQWVLEQALAQLAE 1035 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 WR++ + + +N+++ L + + + +++K ++L +ESV M PE++ Sbjct: 1036 WREK-GAKGLRMAVNLSAHQLRKDTIVADIINVLTKHKLPKGALELEITESVAMQYPEQN 1094 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 LL LR+ GI L +DDFGT S LSYL +P D +K + S + AI + Sbjct: 1095 AKLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKDIESDPNDAAISAAT 1154 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 I MA + T++A+ + E + L+ MGCD +Q + + PL L+ ++ F Sbjct: 1155 ISMAHELGLTVVAEGVENEAQLVLLSSMGCDLVQGYYFSKPLAAEDCLRFIERNF 1209 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 7/153 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLA 441 + + + + F + +R + + V I G Sbjct: 515 TMALSKEIARSQTFQATLVESEQRYRTLFDKAPVGHALKRLEDGQFVAINQAFMDITGYT 574 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500 + + I R + L+ RR G Q +R D Q + + Sbjct: 575 LEEL--QALDPWELTPIRYRLSETEQLERLKQTRRYGPYQKHYR--HKDGQMVAVRLNGS 630 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 ++ +NG+ L + I DITEQ++++ + A Sbjct: 631 LVTAANGEQL-ILFIVEDITEQERTVARVNLLA 662 >gi|107099561|ref|ZP_01363479.1| hypothetical protein PaerPA_01000574 [Pseudomonas aeruginosa PACS2] Length = 1245 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 159/568 (27%), Positives = 277/568 (48%), Gaps = 10/568 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + ++ + + + V D + + I G + G + L Sbjct: 675 RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + + + R G Q E R + + + I + N G+I ++G+ Sbjct: 734 GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F RL LD + +++ V+ ID+D++ Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG +GD +L ++ R+ + L+ D +ARL G+ F I+L + A Sbjct: 851 KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P E V+AS+G A + + ++KNA+ AMY AK RG + +E + Sbjct: 911 LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++R+ ++ +L A+E EL L Y P + L +VG EAL++W HP +G IS Sbjct: 971 RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I + ++LE + + W+ + P + +N+A L ++ E + Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQMIERL 1089 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + L+ ++ PSR++L +ES +M E + +L L+++G+ L +DDFGT S LSYL Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G AI R+II + ++++ T+IA+ + E LT GC Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209 Query: 933 DYIQDSHVASPLGFNSIL-KLLKERFPL 959 + IQ ++ PL K LK R P+ Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L+ V I++ + + + V + + + V I W+ Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327 Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + +R +P +LG G W +H D + S R Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++R+ AAD + W+ + P+ + G L G+ DITE K + + + Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W L + L L N + G +L VI+ Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448 + + + E+ + A D + + + + G + Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606 Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + DR +++ + + VR + + + + +G Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661 Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534 + + IA DITE++ E + A Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687 >gi|222055390|ref|YP_002537752.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] gi|221564679|gb|ACM20651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] Length = 912 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 163/669 (24%), Positives = 293/669 (43%), Gaps = 23/669 (3%) Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349 A + Y P+ T I IT+ ++ T ++ M+ + LI Sbjct: 256 WILAASYPIVEAYAPLKTNRIYFITVMAVGTSVTLLFVWFLMQRLTSPLSLI-------- 307 Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + D + + + + +L+ + Sbjct: 308 -----TRHVEAIPDKSGLHNLINLERKDELGTLINAFNSMILSLDQHQNALRESESNFRA 362 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + D + A I+G + M IH + Sbjct: 363 LADNANDGLQIITDSSHLAYVNKRAAEIVGYSVEEMLLTTIE--TIIHPDHLQMIIERKA 420 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 Q+E + + + + + + I DIT++KK+ + I Sbjct: 421 KTDAGEFVPKQFEIMLAHRNGSCVPVEVTTARTIWQGKQVE--LAIVRDITDRKKAEDEI 478 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A+ D LTG+PNR DRL + + D+ + +M +D+D++K IND LG GD Sbjct: 479 QQLAYYDTLTGLPNRSLLQDRLGQGIVQAVRDNR-KVAIMFLDLDRFKSINDTLGHVAGD 537 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L ++ R+ E ++ D +AR+ G+ F II+ + ++ + A + +I+ P+ L + Sbjct: 538 SLLATVAERLTECVRETDTVARIGGDEFVIIISAIEHAEDLNKIAEKILAAISKPLVLND 597 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707 +EI +TASIG A + +LKNA+LAMY AK +G N + F + +++ Sbjct: 598 QEIFITASIGIAIYPEDGTDVQGLLKNADLAMYKAKDQGKNAFQYFSREMNVQALEHLIL 657 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L A+E +E + Y P + L +VG+EALI+W HP G + S F+ +AEE +I Sbjct: 658 ENSLRRALERNEFVIFYQPQMDLKSGRLVGMEALIRWQHPDLGLLPPSRFIPMAEETGLI 717 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I + L+ +W D P+ + +N+ + E ++A++ KT +PS+ Sbjct: 718 LPIGEWALQTACAKNRAWMDA-GFMPLRVAVNLCGIQFRQKKFIELIEAVLKKTGLAPSQ 776 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +ES++M E S +L +L+++G+SL +DDFGT S LSYL P + VK + S Sbjct: 777 LELELTESMLMSKAEESTTVLHKLKEMGVSLAIDDFGTGYSSLSYLKNFPINRVKIDRSF 836 Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + + AI+ +II MA N+ + A+ + ++ L+ C+ IQ ++SPL Sbjct: 837 IRDVPNNPDDTAIVSAIIAMAHNLNLKVTAEGVENHSQLEFLSTRNCNEIQGYLLSSPLP 896 Query: 946 FNSILKLLK 954 + L+ Sbjct: 897 EAEFTRFLR 905 >gi|146291244|ref|YP_001181668.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella putrefaciens CN-32] gi|145562934|gb|ABP73869.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens CN-32] Length = 1077 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 152/599 (25%), Positives = 291/599 (48%), Gaps = 15/599 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 P L + + + + + Q R + S + + D Sbjct: 473 PTLNININISGSDELARMARAMNRMISERQKASHALSRAAAVFNYSAEGIVVTDAENHIE 532 Query: 429 TTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P I G + G + L H + +F T + + + G+ + E + Sbjct: 533 LINPAFTQITGYTLNEIKGHNPSILSAKRH---QPHFYTAMWQSL-QKEGKWEGEIWNKR 588 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D + + + I + N G+I+++IG+ DI+++K+ + + A D+LTG+PNR+ F Sbjct: 589 KDGEVYPEYLAITVVKNEQGEIIQHIGLFMDISKRKQYEQDLWYQANFDSLTGLPNRKLF 648 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL + L+ D + +++ID+D++K INDV G A GD +L + +R+ + D Sbjct: 649 NERLQHEIQLAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLESIGGQND 707 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +AR+ G+ F +IL N L I A + +++A P +L EREI ++AS G + Sbjct: 708 FIARIGGDEFVLILPRLTNELAIEHMATRIIETLATPFSLNEREIQISASFGIGVYPEDG 767 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S + +N E+AMY AK G N+ + F ++ R+ +++ L AV +E L Y Sbjct: 768 LDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFALHYQ 827 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ + ++ +EALI+W P G I F+ IAEE +I+ + ++L + D+ W Sbjct: 828 PIVDMKTGQVCSVEALIRWQDPDLGLIPPDHFIGIAEETGLIEPMGEWVLNQAMSDLRQW 887 Query: 786 RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + I + IN++ + ++ + +Q ++ +P + + +ES++MG+ Sbjct: 888 QKSGLN--INVAINVSGRQCINTRGMSFDQVLQECFNRHHINPRNVHIEITESMLMGDAS 945 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L +R++G + +DDFGT S LSYL P +K + S + + + +++ Sbjct: 946 HCLSTLNAIRQLGSQIYIDDFGTGYSSLSYLKKYPISVIKIDRSFVEHALESTSNANLVK 1005 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 +I+ M +++E ++A+ I L +GCD+ Q ++ PL F+ + LLK+++ + Sbjct: 1006 AIVMMGQSLEMKLVAEGIETPAQWNFLKDLGCDFAQGYLISKPLPFDDVTPLLKQKYQI 1064 >gi|148262949|ref|YP_001229655.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter uraniireducens Rf4] gi|146396449|gb|ABQ25082.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter uraniireducens Rf4] Length = 709 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 147/583 (25%), Positives = 267/583 (45%), Gaps = 16/583 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 +IG + Q F S AV S + D P + G Sbjct: 122 AVIGQCMTSIKWERQIREQEKFIRK--LSRAVEQSPVAIIITDTSGTIEYVNPRFTQLTG 179 Query: 440 LASGSMHGPIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 S G + L + I+ G EF R + + +W Sbjct: 180 YTSAETIGKKPHILKSGETPPEEYRKLWEIIS-----GGGEWWGEFHNRKKNGELYWASA 234 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 I P++N N I +I DITE+K++ E I A+ D LTG+PNR F + + L Sbjct: 235 SISPITNGNEQITHFIAFQEDITERKQAEETIKQMAYYDTLTGLPNRHLFNELMHLALAQ 294 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNR 616 + + L V+ +D+D++K IND LG VGD +L + R+ E + D +AR G+ Sbjct: 295 AHRHNRL-LAVLFLDLDRFKHINDTLGHTVGDQLLQASAHRLKECCRRDRDTVARRGGDE 353 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L ++ + A + + L + E+ ++ IG + + + + ++KN Sbjct: 354 FIILLPDIDDVQEAVRVAQKIIDAFTQVFVLPDIELFISTCIGISIFPNDGRDTETLIKN 413 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY AK +G + + + R+ ++ L A++ E L Y P + + + Sbjct: 414 ADMAMYRAKEQGRSRYHLYTSSMDEQAFRRLTMENSLRKALQREEFSLYYQPKVNIKTGQ 473 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 IV LEAL++W +P+ G I ++F+ +AE+ +I + ++L +W+ N PP+ Sbjct: 474 IVCLEALVRWQNPEMGLILPNQFIPLAEDTGLIIPLGEWVLRTACAQNKTWQ-LLNYPPM 532 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N + + L + ++ ++ + +P ++L +E+V++ N E++ L RL + Sbjct: 533 RVAVNFSPRQFQQPRLTDMVEQILGEADLAPCWLELELTENVMLQNVEKTVQTLNRLSNL 592 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912 GI +++DDFGT S LSY+ +P T+K + S + AI ++I MA+++ Sbjct: 593 GIHISIDDFGTGYSSLSYIKKLPIQTLKIDRSFVHDINTNADDAAIAIAVITMAQSLRLN 652 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + +K L + C +Q + PL + LL Sbjct: 653 VIAEGVETLEQMKLLDGLNCPEMQGYLFSKPLPVAEMTTLLSN 695 >gi|313201594|ref|YP_004040252.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312440910|gb|ADQ85016.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 1126 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 281/568 (49%), Gaps = 12/568 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIH 457 +D + + + D + I G + G + + + +H Sbjct: 557 AAEADLRLARQVFDNTAEGIVITDPAFRVLEVNQAYQQITGYDKEEIIGKLPSVMQAGLH 616 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + + + R G+ E R + + + I ++++ G + Y+ + Sbjct: 617 E---AAYYEGIWQTLR-REGQWVGEIWNRRKSGESYPEWLSISQVADAKGSVQNYVAVFT 672 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT++K S E + A D LT +PNR +R+ L + + V+ ID+D++K Sbjct: 673 DITQRKLSEERLQFLANHDALTHLPNRALLQERIDQALFRAQRN-KTAIAVLFIDLDRFK 731 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG GD +L +R+ E L+ D +AR G+ F +++ ++ + A + Sbjct: 732 IINDTLGHQTGDMLLQEAAKRLKECLRETDTVARQGGDEFVVLVEDCGDTDYLNTIARKI 791 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695 ++A P L+ RE+ ++ASIG + + + ++ +LK+A+ AMY AK G N + Sbjct: 792 MATLAQPFILVGRELFISASIGISVYPDDGLDTASLLKHADAAMYRAKESGKNTFRFYAA 851 Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 ++ + + ++ +L AVE +E L Y P + L ++I+G EA+++W HP+ G +S Sbjct: 852 EANTNSVELLTLENNLRRAVERNEFVLHYQPKVDLRSQKIIGAEAVVRWQHPELGMLSPM 911 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AEE +I I ++++ R + W+ + + +N++++ D L + + Sbjct: 912 QFIPLAEETGLIIDIGAWIMQESCRQAVEWQQLTGQ-NVRVAVNLSARQFRDETLRQTIA 970 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++++ +P ++L +ES++M N ER+R +L +G + +DDFGT S YL + Sbjct: 971 DALAESGLTPDCLELEITESMIMHNAERAREVLQHFHDLGAHVLIDDFGTGYSSFGYLKH 1030 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D++K + S + +AI ++II MA +++ ++A+ + + + L + GCD Sbjct: 1031 FPIDSLKIDRSFVRDIPDDVDDMAITQAIIAMAHSLQIKVVAEGVETQEQLAFLKKQGCD 1090 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVK 961 IQ + PL + +++LK + P+++ Sbjct: 1091 QIQGFLFSEPLHTHDFVRMLKLQ-PMLR 1117 Score = 82.3 bits (202), Expect = 4e-13, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 3/153 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 T+I + + + + V IVW + + +LG Sbjct: 417 VTLIIDISSRKKAEAELVKSQQDYRELVESVQAIVWRAIPGGKFTFVSKEAEALLGYPLA 476 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 W+ IH +DRD + +++R+ AAD + WM ++ + Sbjct: 477 QWTMEPDFWVDKIHPDDRDWVVE-YCRTESLKLQSFDFDYRMIAADGRVVWMKDIVKVIP 535 Query: 504 N-SNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 N SN +G+ DIT K + E L A Q Sbjct: 536 NMSNTRPAELVGVMLDITTSKAA-EADLRLARQ 567 Score = 79.6 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 44/332 (13%), Positives = 100/332 (30%), Gaps = 28/332 (8%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 + R + + FA+ L ++ + +V + L S + + S ++F Sbjct: 115 IRLRDFLTLVFFAVGISPLV-SALINVLMLVVVGADTTALANSFTNSWLEDAFSYLLFTP 173 Query: 271 MYLHWNRWHA-KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI--VLYYTYFII 327 L + + + + + L S M+ A ++ I+ Sbjct: 174 AVLAFYHYEPIRWSWARAGEALLLTGLVVFSCLLTMLGAMDKSMSQLMQPQAFMLFPLIM 233 Query: 328 YHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 + ++ A L + + +W + +D Q L+ + +++L V Sbjct: 234 WAALRFHQRGAALSVLFVAMTALWGGAHGL---GTFAHDFAQSNLLDYWMYVLVLSSTGV 290 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGS----------GDIVWDWDIVRDRVTTTPDIAT 436 A + G R + + V V + Sbjct: 291 -----ALSGLNAGRIRSEARLKEQLDTYDALLHAQADVNEGVAIIH-RGKIVYGNDALWR 344 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I G + G + ++ IH +DR I + +YE + + + Sbjct: 345 IGGYSPGDI-PLGSDFFSLIHPSDRKRVSEIYQQRLQDMDVPTRYEALGLGKNGRAIHIE 403 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 I + + R + + DI+ +KK+ Sbjct: 404 IAAAQYRDDS---QRIVTLIIDISSRKKAEAE 432 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] gi|133738459|emb|CAL61504.1| Conserved hypothetical protein; putative EAL, GAF, PAS/PAC, GGDEF domains [Herminiimonas arsenicoxydans] Length = 859 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 159/605 (26%), Positives = 266/605 (43%), Gaps = 14/605 (2%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ + L H LA + + S AV S Sbjct: 257 IFSASAQILGALTVYHREPFQPSESDLQLLETATHFLAIAIERKQSEVFMRKLSQAVEQS 316 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD--NFRTILDSFV 472 + + D+ +T G A + G N +H + + + + + Sbjct: 317 SNAIIITDLNGTIEYANTTFSTNTGYALHDIIGKKPN----MHKSGKTSRATYADMWAHL 372 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R Q EF R + + ++R+ P+ ++G I Y+ I DIT QK + I Sbjct: 373 -GRGESWQGEFINRRHNGEERIDLVRVSPVREADGRITHYLAIEEDITNQKNAQARIESL 431 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D LTG+PNR +R L L+ D VM +D+D +K IND LG +GD +L Sbjct: 432 AHFDVLTGLPNRALLDERAQRALRLAEEDQ-ATLAVMFLDLDHFKNINDTLGHNLGDTLL 490 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 V L +R+ +L+ D L+RL G+ F ++L N A + ++I P + E+ Sbjct: 491 VELAQRLRAVLRRDDTLSRLGGDEFVLLLPG-ANRESAKKIAQELMRAINEPYRIGSHEL 549 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710 V ASIG A + + + + KNA++AMY AK G N SF + + Sbjct: 550 NVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRNAYRSFTQEMQAYSTRYLQVLNA 609 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A+ +L++ Y P I L+ +++G EAL++W HP+ GNIS +EF+ IAEE +I I Sbjct: 610 LRQAIAQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNISPAEFIPIAEESGLILQI 669 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L W + I +N+++ L + ++ + + P ++L Sbjct: 670 GEWVLRVAVAQAKKWHQLGLD-KLIIAVNLSAVQFRHAGLPNLVMQILKEEDFPPQYLEL 728 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +E V M +P+ + ++ L + G+ +++DDFGT S LSYL +K + S + Sbjct: 729 ELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSLSYLKQFKAYKLKIDQSFVRD 788 Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + AI+ +II MAKN+ IA+ + L GC Q H + PL Sbjct: 789 ISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGCHEAQGYHYSKPLPAAD 848 Query: 949 ILKLL 953 + Sbjct: 849 FETFI 853 >gi|120600723|ref|YP_965297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sp. W3-18-1] gi|120560816|gb|ABM26743.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. W3-18-1] Length = 1077 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 152/599 (25%), Positives = 291/599 (48%), Gaps = 15/599 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 P L + + + + + Q R + S + + D Sbjct: 473 PTLNININISGSDELARMARAMNRMISERQKASHALSRAAAVFNYSAEGIVVTDAENHIE 532 Query: 429 TTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P I G + G + L H + +F T + + + G+ + E + Sbjct: 533 LINPAFTQITGYTLNEIKGHNPSILSAKRH---QPHFYTAMWQSL-QKEGKWEGEIWNKR 588 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D + + + I + N G+I+++IG+ DI+++K+ + + A D+LTG+PNR+ F Sbjct: 589 KDGEVYPEYLAITVVKNEQGEIIQHIGLFMDISKRKQYEQDLWYQANFDSLTGLPNRKLF 648 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL + L+ D + +++ID+D++K INDV G A GD +L + +R+ + D Sbjct: 649 NERLQHEIQLAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLESIGGQND 707 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +AR+ G+ F +IL N L I A + +++A P +L EREI ++AS G + Sbjct: 708 FIARIGGDEFVLILPRLTNELAIEHMATRIIETLATPFSLNEREIQISASFGIGVYPEDG 767 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S + +N E+AMY AK G N+ + F ++ R+ +++ L AV +E L Y Sbjct: 768 LDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFALHYQ 827 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ + ++ +EALI+W P G I F+ IAEE +I+ + ++L + D+ W Sbjct: 828 PIVDMKTGQVCSVEALIRWQDPDLGLIPPDHFIGIAEETGLIEPMGEWVLNQAMSDLRQW 887 Query: 786 RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + I + IN++ + ++ + +Q ++ +P + + +ES++MG+ Sbjct: 888 QKSGLN--INVAINVSGRQCINTRGMSFDQVLQECFNRHHINPRNVHIEITESMLMGDAS 945 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L +R++G + +DDFGT S LSYL P +K + S + + + +++ Sbjct: 946 HCLSTLNAIRQLGSQIYIDDFGTGYSSLSYLKKYPISVIKIDRSFVEHALESTSNANLVK 1005 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 +I+ M +++E ++A+ I L +GCD+ Q ++ PL F+ + LLK+++ + Sbjct: 1006 AIVMMGQSLEMKLVAEGIETPAQWNFLKDLGCDFAQGYLISKPLPFDDVTPLLKQKYQI 1064 >gi|83646563|ref|YP_434998.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396] gi|83634606|gb|ABC30573.1| FOG: EAL domain [Hahella chejuensis KCTC 2396] Length = 1092 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 164/626 (26%), Positives = 278/626 (44%), Gaps = 24/626 (3%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI--------QHVLATGYFSQG 399 I + + +R + ++ G V L + Q A Sbjct: 316 VIGLLNVARTEGERWAEESLRALQSLGHQFSVALGRARLFDSLESLVEQRTSALKAEMAE 375 Query: 400 IFSDGERQSL---AVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 E+ L AV S + + D V P I G + G RN+L Sbjct: 376 KERAQEQLKLRNRAVDASVNAIIIADKSEPDNPIVYANPAFERISGYNLEDVTG--RNFL 433 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + + + + D W +++ P++++ GD+ ++ Sbjct: 434 FLLGNETSQLGVANIKRALKSNTEGYAL-LKNYRKDGTLFWSELKVAPVTDAKGDVTHFV 492 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 I ND+TE + + DNLTG+PNR DR+ + +A + + V D+ Sbjct: 493 AILNDVTESIQYQAQLEYKTKYDNLTGLPNRNLLNDRIQQAIAYAARRNKG-FALAVFDL 551 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K IND +G GD +L + + L+ D LARL G+ F I++ E + Sbjct: 552 DNFKYINDSMGHETGDQLLTEVAESLRSCLREGDTLARLGGDEFVILMHKEECDRPLGLM 611 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 +++ ++ P L ++EI VT SIG + +S +LKNA+ AMY AK RG N + Sbjct: 612 LNRIQQLVSQPRRLKDKEILVTPSIGVCQFPEDGEDASTLLKNADTAMYKAKERGRNRIC 671 Query: 694 SFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 S+ RV +++DL +EN EL L Y P + VGLEAL++W Sbjct: 672 SYTQEMNESIQKRVQMEQDLRRGIENGELELYYQPQLDPHGGGAVGLEALVRWRKGDR-M 730 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + EF+ IAEE +I ++ ++L + WRDQ + + +N++ + D Sbjct: 731 VPPLEFIPIAEETGLITEVDAWVLRAACLQLKMWRDQKQQM-VPVSVNLSPRQFQDAYCV 789 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E ++ ++ ++ P +K+ +ES+VM N E + + +L+ +G+ L++DDFGT S LS Sbjct: 790 ELVRKVLQESNIEPGCLKIEVTESMVMHNAEEALRTMTQLKAMGVQLSMDDFGTGYSSLS 849 Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL PFD +K + S + + + AI+R+II + K + I+A+ + L R Sbjct: 850 YLKMFPFDQLKIDKSFVRNVTNDPQEAAIIRAIIGLGKTLGIKIVAEGVETVEQYSFLVR 909 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 GCD IQ + PL + + L+E Sbjct: 910 AGCDLIQGYFYSPPLPVAACMHFLQE 935 >gi|319428399|gb|ADV56473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens 200] Length = 1077 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 153/599 (25%), Positives = 291/599 (48%), Gaps = 15/599 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 P L + + + + + Q R + S + + D Sbjct: 473 PTLNININISGSDELARMARAMNRMISERQKASHALSRAAAVFNYSAEGIVVTDAENHIE 532 Query: 429 TTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P I G + G + L H + +F T + + + G+ + E + Sbjct: 533 LINPAFTQITGYTLNEIKGHNPSILSAKRH---QPHFYTAMWQSL-QKEGKWEGEIWNKR 588 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D + + + I + N G+I+++IG+ DI+++K+ + + A D+LTG+PNR+ F Sbjct: 589 KDGEVYPEYLAITVVKNEQGEIIQHIGLFMDISKRKQYEQDLWYQANFDSLTGLPNRKLF 648 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL + L+ D + +++ID+D++K INDV G A GD +L + RR+ + D Sbjct: 649 NERLQHEIQLAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLQDVARRLESIGGQND 707 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +AR+ G+ F +IL N L I A + +++A P +L EREI ++AS G + Sbjct: 708 FIARIGGDEFVLILPRLTNELAIEHMATRIIETLATPFSLNEREIQISASFGIGVYPEDG 767 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S + +N E+AMY AK G N+ + F ++ R+ +++ L AV +E L Y Sbjct: 768 LDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFALHYQ 827 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ + ++ +EALI+W P G I F+ IAEE +I+ + ++L + D+ W Sbjct: 828 PIVDMKTGQVCSVEALIRWQDPDLGLIPPDHFIGIAEETGLIEPMGEWVLNQAMSDLRQW 887 Query: 786 RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + I + IN++ + ++ + +Q ++ +P + + +ES++MG+ Sbjct: 888 QKSGLN--INVAINVSGRQCINTRGMSFDQVLQECFNRHHINPRNVHIEITESMLMGDAS 945 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L +R++G + +DDFGT S LSYL P +K + S + + + +++ Sbjct: 946 HCLSTLNAIRQLGSQIYIDDFGTGYSSLSYLKKYPISVIKIDRSFVEHALESTSNANLVK 1005 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 +I+ M +++E ++A+ I L +GCD+ Q ++ PL F+ + LLK+++ + Sbjct: 1006 AIVMMGQSLEMKLVAEGIETPAQWNFLKDLGCDFAQGYLISKPLPFDDVTPLLKQKYQI 1064 >gi|170701267|ref|ZP_02892234.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria IOP40-10] gi|170133826|gb|EDT02187.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria IOP40-10] Length = 859 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 150/574 (26%), Positives = 266/574 (46%), Gaps = 8/574 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 I+++L + + + + A + W++ R +P++ ILGL + Sbjct: 121 RIRYLLRAAAAVEKLATTEVSLTHAQALAHVGNWEFHAGRTDGYWSPELYRILGLDAAHA 180 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 L + +++ + + E R+ AD ++ + + Sbjct: 181 PPTFERLLQAVPADEQPLLVQSF-TSLRTEGVPFSLEHRLVHADGTERCVLHQAESGRDP 239 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 N I+ GI DITE+K I A D LTG+PNR DR+ + + L Sbjct: 240 NHAII-LRGIVQDITERKMQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQL- 297 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 VMV+D+D++K IND G +VGD +L + R+ ++ D +ARL G+ F ++L++ Sbjct: 298 VAVMVLDLDRFKHINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLA 357 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A + + P L + ++ VT S+G + + + +LK A+ A+Y AK Sbjct: 358 TQADADVIARKILDTFIEPFTLDKHDLHVTTSVGVSLCPTDGANAETLLKTADAALYAAK 417 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + ++ L AV N EL L Y P + L +I G+EALI+ Sbjct: 418 EHGRNCYRFYTRELGARVEEQTILENALHQAVANHELELYYQPKVDLKTGQISGVEALIR 477 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W P G I F+ IAE+ +I I ++L ++WR PPI I +N++++ Sbjct: 478 WRRPGIGVIPPDRFIPIAEDCGLILPIGEWVLRTACMQAVAWRRD-GHPPIRIAVNLSAR 536 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 ++ ++ + +T +P ++L +ESV+M + + L L+ +G+ L+LDDF Sbjct: 537 QFRQQDVAAMVRTTLEETGLAPDSLELELTESVLMQDCDAIAHTLRELKALGVVLSLDDF 596 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D VK + S + ++ + ++ RSII MA+++ +A+ + E Sbjct: 597 GTGYSSLSYLKDLPIDVVKIDRSFLDDVTTSAEGASLTRSIIAMAESLHMETVAEGVETE 656 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L R C +Q + + P+ + I +L Sbjct: 657 AQLSFLNRHRCHAMQGYYFSHPVTGDEIADMLSA 690 >gi|95930396|ref|ZP_01313133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95133648|gb|EAT15310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 904 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 149/628 (23%), Positives = 275/628 (43%), Gaps = 22/628 (3%) Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI-------VILIGFTVI 387 + +L + LI + + + + + ++ F ++ Sbjct: 277 RQGILSVFFATLISAGGVIIIFRYLTQRSLNTVLQMTEAAFRNTEPARYKPTLVSEFNIL 336 Query: 388 QHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 H + ++ L + + + ++ P + G Sbjct: 337 GHSI--VDLDHQRKESEKQLLLSSSVFDNAVEGIVITNLDGIIEQVNPACEAMSGYRLKE 394 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G H N ++ + S + GR + E R + + + + + I +N Sbjct: 395 LIGENPRIFRSDHHNS-AFYQQMWQSLIEE--GRWEGEVWNRRKNGEVYPLNVSISRCTN 451 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 S G Y+ I +DI+E K+S E + A+ D LT +PNR+ F DRL+ + + Sbjct: 452 SAGIPSHYVAIFHDISEIKRSEEKLQHQAYHDALTNLPNRKLFHDRLSVAVAHARQH-KT 510 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +DID +K IND LG GD +L ++ R+ + D ARL G+ F I++ Sbjct: 511 KLAVIYLDIDNFKYINDSLGHHYGDKLLQQISERLLSCTRQEDTTARLGGDEFIILMPEI 570 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + I + K + +P L R+ TV S+G + T +++KNA++AMY A Sbjct: 571 EDPHDITVLCRRILKQLELPHALSGRDYTVNVSMGVTVFPDDADTPEDLIKNADIAMYRA 630 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F + ++ ++ L A+ +E L Y P + L E ++G EALI Sbjct: 631 KEAGKNGYQLFTAAMQQTIMQRIELEARLSDALCRNEFVLFYQPQVDLESEHVIGAEALI 690 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W P + EF+ IAEE +I I+ ++L+ R WR+Q+ + +N++S Sbjct: 691 RWQKPDGQLVYPDEFIPIAEECGLITQIDHWVLKAACRQANKWREQSGR-NFKMSVNLSS 749 Query: 803 KDLL-DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + D EL + ++ +++KT + L +E+ VM + E + ++ +L +G+S+ +D Sbjct: 750 EQFAKDQELVQRVKNVLNKTGLPAECLTLEVTENAVMSDTESAIAIMTQLTALGVSIAID 809 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSY+ P +K + S + +AI SII + +N+ +IA+ + Sbjct: 810 DFGTGYSSLSYVKNFPARYLKIDRSFVKDIPGDSDDMAIAASIISLGRNLNMEVIAEGVE 869 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947 + I L + C +Q P Sbjct: 870 EQTQIDFLKQHRCQQVQGYFYGKPCAAE 897 >gi|254237209|ref|ZP_04930532.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126169140|gb|EAZ54651.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 1245 Score = 559 bits (1440), Expect = e-156, Method: Composition-based stats. Identities = 161/568 (28%), Positives = 276/568 (48%), Gaps = 10/568 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + ++ + + + V D + + I G + G + L Sbjct: 675 RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + + + R G Q E R + + + I + N G+I ++G+ Sbjct: 734 GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F RL LD + ++N V+ ID+D++ Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REENRPGAVLFIDLDRF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG +GD +L ++ R+ + L+ D +ARL G+ F I+L + A Sbjct: 851 KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P E V+AS+G A + + ++KNA+ AMY AK RG + +E + Sbjct: 911 LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++R+ ++ +L A+E EL L Y P + L +VG EAL++W HP +G IS Sbjct: 971 RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I + ++LE + + W+ + P + +N+A L +L E + Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + L+ + PSR++L +ES +M E + +L L+++G+ L +DDFGT S LSYL Sbjct: 1090 EQLLELSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G AI R+II + ++++ T+IA+ + E LT GC Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209 Query: 933 DYIQDSHVASPLGFNSIL-KLLKERFPL 959 + IQ ++ PL K LK R P+ Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L+ V I++ + + + V + + + V I W+ Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327 Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + +R +P +LG G W +H D + S R Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++R+ AAD + W+ + P+ + G L G+ DITE K + + + Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W L + L L N + G +L VI+ Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448 + + + E+ + A D + + + + G + Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606 Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + DR +++ + + VR + + + + +G Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661 Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534 + + IA DITE++ E + A Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687 >gi|115351650|ref|YP_773489.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria AMMD] gi|115281638|gb|ABI87155.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria AMMD] Length = 860 Score = 559 bits (1440), Expect = e-156, Method: Composition-based stats. Identities = 151/574 (26%), Positives = 266/574 (46%), Gaps = 8/574 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 I+++L + + + + A + W++ R +P++ ILGL + Sbjct: 121 RIRYLLRAAAAVEKLATTEVSLTHAQALAHVGNWEFQAGRTDGYWSPELYRILGLDAAHA 180 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 L + +++ + + E R+ AD ++ + + Sbjct: 181 PPTFERLLQAVPADEQPLLVQSF-TSLRTEGVPFSLEHRLVHADGTERCVLHQAESGRDP 239 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 N I+ GI DITE+K I A D LTG+PNR DR+ + + L Sbjct: 240 NHAII-LRGIVQDITERKMQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQL- 297 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 VMV+D+D++K IND G +VGD +L + R+ ++ D +ARL G+ F ++L++ Sbjct: 298 VAVMVLDLDRFKHINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLA 357 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A + + P L E ++ VT S+G + + + +LK A+ A+Y AK Sbjct: 358 TQADADVIARKILDTFIEPFTLDEHDLHVTTSVGVSLCPTDGTNAETLLKTADAALYAAK 417 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + ++ L AV N EL L Y P + L +I G+EALI+ Sbjct: 418 EHGRNCYRFYTRELGARVEEQTILENALHQAVANHELELYYQPKVDLKTGQISGVEALIR 477 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W P G I F+ IAE+ +I I ++L ++WR + PPI I +N++++ Sbjct: 478 WRRPGIGVIPPDRFIPIAEDCGLILPIGEWVLRTACMQAVAWRRE-GHPPIRIAVNLSAR 536 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 ++ ++ + +T +P ++L +ESV+M + L L+ +G+ L+LDDF Sbjct: 537 QFRQQDVAAMVRTTLEETGLAPDSLELELTESVLMQDCNAIAHTLRELKALGVVLSLDDF 596 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D VK + S + ++ + ++ RSII MA+++ +A+ + E Sbjct: 597 GTGYSSLSYLKDLPIDVVKIDRSFLDDVTTSAEGASLTRSIIAMAESLHMETVAEGVETE 656 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L R C +Q + + P+ + I +L Sbjct: 657 AQLSFLNRHRCHAMQGYYFSHPVTGDEIADMLSA 690 >gi|119493631|ref|ZP_01624280.1| hypothetical protein L8106_18651 [Lyngbya sp. PCC 8106] gi|119452551|gb|EAW33735.1| hypothetical protein L8106_18651 [Lyngbya sp. PCC 8106] Length = 776 Score = 559 bits (1440), Expect = e-156, Method: Composition-based stats. Identities = 160/598 (26%), Positives = 274/598 (45%), Gaps = 18/598 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW--DWDIVRDRV----TTTPDIA 435 I + Q + + + + ++ W +D + +P A Sbjct: 158 INHALQQEIAERQRIEESLRESESKFRQLSEHIQEVFWLMGYDATSKQFTAIEYVSPAFA 217 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 TI G S++ WL IH +D + G E+RV D W+ Sbjct: 218 TIWGKTCESLYENPWEWLSSIHSDDHERVEKAFTE--KAILGSFDEEYRVVHPDGTVRWI 275 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 R P+++ G++ R GIA DIT K++ ++ D+LTG+ NR F+ RL + Sbjct: 276 RDRGFPVTDDKGEVYRVAGIAEDITNLKRAEAHLVRETLHDSLTGLANRTYFMQRLEMAI 335 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +N R V+ ID+D +K+IND LG +GD +L+ ++R + ++ D +ARL G+ Sbjct: 336 KKRNRHNNYRFAVLFIDLDDFKRINDTLGHLIGDQLLMQISRILTGSVRDIDSVARLGGD 395 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I++ + + + +++ + + L EI + SIG T + +E+++ Sbjct: 396 EFTILVEDVQDWQDVLNITQRIQEQLTSAVQLEHHEIFTSTSIGIVFSTPNYQNGTEVVR 455 Query: 676 NAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A++AMY AK G E F S V ++ L A+ N EL+L Y PI+ L D Sbjct: 456 DADIAMYRAKADGKGCYEVFDRSMYDQVLHLVELENALRQAIANQELHLYYQPIVSLRDN 515 Query: 734 E-----IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 I G E L +W HPK G IS+SEF+ IAE+ I I ++L++ R Sbjct: 516 SQDHLIIEGFEVLSRWHHPKKGLISASEFISIAEDTGQINEIGEWVLQQACIQFQQLRSH 575 Query: 789 ANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 ++ INI+ + L ++ L + + T P +KL +ES ++ N + + Sbjct: 576 YPDVTNLYFSINISGRQLRESSLLNLLDHTLQTTQIPPHCLKLELTESSLIENTTIAAKI 635 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPM 905 L +++ GI ++LDDFGT S L YL P + +K + S + + I+ SI+ + Sbjct: 636 LKEIQQRGIEISLDDFGTGFSSLRYLHQFPLNVIKIDRSFVETLDLGTRERCIIHSIVTL 695 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 A+ + +A+ I +++L + CD Q + P+ I L +R LVK Sbjct: 696 ARALGFATVAEGIETRQQLEKLRSLECDSGQGYFFSKPIPGEQIADFLLKRGVLVKPA 753 >gi|313682174|ref|YP_004059912.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313155034|gb|ADR33712.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 1056 Score = 559 bits (1440), Expect = e-156, Method: Composition-based stats. Identities = 155/565 (27%), Positives = 272/565 (48%), Gaps = 12/565 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + + S A+ S + V D + G + G Sbjct: 498 RELRKLSQAIEQSPNSVIITDSEANIEYVNAAFTAATGYTLDDVIGKNPRLFQS-GKTSP 556 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + D + EF R D ++I P+ ++G + Y+ I +DITE Sbjct: 557 SAYIALWDQLREGK--SWHGEFINRGKDGNEFIEEVKIAPIYQTDGSLSHYMAIKDDITE 614 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K++ E + A D LTG+PNR ++R+T ++++ D VM +D+D +K IND Sbjct: 615 KKRTEERVHYLANYDLLTGLPNRVQLIERITYFINVAKRHDG-EFAVMFLDLDHFKDIND 673 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 +LG ++GD +L+ L +RI ++ D ++RL G+ F IL S + +A+ + ++I Sbjct: 674 MLGHSIGDILLIELAKRIQSTIREEDTVSRLGGDEFIFILPS-TSVHGVANVVEKLLETI 732 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 P ++ + E+ VTASIG A + +LKNA+ AMY AK G N+ F + Sbjct: 733 TKPFSIEQNELIVTASIGIAIYPIDGTDPETLLKNADTAMYQAKQNGRNNYRFFTKAMQE 792 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + + + L A+E EL++VY P + + D I+G EAL++W+HP+ G IS +EF+ Sbjct: 793 TLARNIQLTNALRHALEKDELHVVYQPQVDISDAHIIGAEALLRWNHPELGAISPAEFIP 852 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++L W D PPI + +N+++ L E + ++ Sbjct: 853 LAEESGLILPIGEWVLRTAVTQAKMWIDS-GFPPIIVAVNLSAVQFRHPHLPELVTTILE 911 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 + P ++L +E+V M +P+ + ++ L GI +++DDFGT S LSYL Sbjct: 912 EVGLPPEYLELELTEAVAMHDPKSAYAIMDNLHDRGIRMSIDDFGTGYSSLSYLKKFKVY 971 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + + AI+ ++I MA ++ IA+ + +K L GCD +Q Sbjct: 972 KLKIDQSFIRDISTDPEDKAIVNAVISMAHSLGLKAIAEGVETVEQLKYLREQGCDEVQG 1031 Query: 938 SHVASPLGFNSILKLLKERFPLVKN 962 + + PL S + + + + K Sbjct: 1032 YYFSKPLSPESFTEFITAQ--VTKR 1054 Score = 48.4 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 76/299 (25%), Gaps = 14/299 (4%) Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLF----MYLHWNRWHAKVGYITFSGIACIA 294 S L R L I F+ ++++ + + + + I Sbjct: 216 YSMLWGATWWYWHFIRLSGFFFLLLYFIRFIEEKNQLFINREIQSSIIEFSADAIITKSM 275 Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +++ + + M E + + + + Sbjct: 276 DGLILTWNAAAESLFGYTADEVIGKSVSILYSPSAAMMERENIRQIRDGASVKQFETVFI 335 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + P +I + I T +F R + Sbjct: 336 AKNGAYVDVAVTLSPIKDSSNTIIGLSKIVRDITERKKTAEAFNRLFL---RNEAILDSV 392 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 DI+ D + + G + G ++ + + Sbjct: 393 PDIIMQVDNDKKYIWANKSGIAFFG---DDVIGKEASYYF----EGEQDTYETTNPLFEG 445 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + E R D + + R +++ NG + + A DITE K+S + + Sbjct: 446 DQNIIYVESFQRRCDGEIRLLAWWCRALNDENGHPIGALSTAQDITEHKQSERELRKLS 504 >gi|116749639|ref|YP_846326.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Syntrophobacter fumaroxidans MPOB] gi|116698703|gb|ABK17891.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Syntrophobacter fumaroxidans MPOB] Length = 844 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 148/551 (26%), Positives = 257/551 (46%), Gaps = 11/551 (1%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466 + GS + + D + + + G A + G R H + F Sbjct: 286 ATVFEGSTEAIIITDARANILRVNSAFTAMTGYADHEVVGKNPRLLKSGNH---HEEFYR 342 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + + G+ Q E R + + + + NS I Y+GI+ DIT +K++ Sbjct: 343 AMWATLS-STGQWQGEIWNRRKNGDIFPAWLTLCAVRNSEDKITNYVGISRDITLRKEAE 401 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 E + A D LTG+PNR F DRLT L + D + ++ +D+D++K IND LG Sbjct: 402 ERLSYQASHDALTGLPNRARFHDRLTHALARAGRDRH-EFAILFLDLDRFKVINDTLGHT 460 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L +T+R+ + D LAR G+ F I+L S + A A + +A P + Sbjct: 461 VGDFLLQGVTKRLLGGTRESDTLARWGGDEFIILLESIRGAEDAAVAARRILDVLAEPFS 520 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DR 704 + E+ V+ SIG + + +L+ A++AMY AK G N + + + +R Sbjct: 521 VQGHEVFVSGSIGISVYPRDGEDVQALLRCADIAMYRAKDSGKNDYQFYESTMSTGGLER 580 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + ++ DL A++ +E L Y P + + IVG EALI+WD P G + +F+ +AEE Sbjct: 581 LKLEGDLRYALKRNEFVLHYQPRVNINTGLIVGAEALIRWDLPDRGLLWPLDFIPLAEES 640 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I I ++L W+D P + +N+++ + L + ++ +T S Sbjct: 641 GFIIPIGEWVLRTACLQCRKWQDAGVPHP-RVSVNLSTHQFKKDNLTSTVDRILKETGLS 699 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P ++L +ES +M N E++ L L ++G+++ +DDFGT S L YL P +K + Sbjct: 700 PGLLELEITESAMMENLEKAVATLQGLAELGVNVAIDDFGTGYSSLGYLKRFPIGALKID 759 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + AI SII + K + ++A+ + + + L CD Q + Sbjct: 760 QSFVRHIPSNIDDTAIAMSIISLGKTLNLKVVAEGVETQEQLTVLRNYQCDEAQGYLFSQ 819 Query: 943 PLGFNSILKLL 953 P+ + + + L Sbjct: 820 PVDADRMTEFL 830 Score = 90.4 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 4/164 (2%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFS--QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 V + + I + + + + E+ + + + + + Sbjct: 126 INEVELFMRIHSALALYRERVIRHHKTRELRESEEKFRVTFDQAPVGIAHVNADGRLLLI 185 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 + +LG + ++ +RD L V +E + D Sbjct: 186 NRRLCEMLGFQERELIES--SFPDLCVPENRDVHERELKKSVEQGLEYHGFEIPLVHKDG 243 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + W + + PM ++ G +I I DITE+K + + +A Sbjct: 244 RIIWTKLTLSPMKDAAGVPKYFIHIVEDITERKNFEDNLRLSAT 287 >gi|330505712|ref|YP_004382581.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328919998|gb|AEB60829.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 746 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 159/614 (25%), Positives = 286/614 (46%), Gaps = 12/614 (1%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFSDGE 405 W++G + RL +++ ++ +I F I L + +Q + Sbjct: 117 LKWYLGAYRLYLDRLLGELLGSSVASDCFSSLIKKVFFDIGLALDSYGAAQRKALQDSEA 176 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R + A+ G+ D +W+W + +D++ + +L L S+ ++W +H +D R Sbjct: 177 RYARAMRGANDGLWEWQLEQDQLYLSERWIRMLDLDRDSLSPTSQSWFSRVHSDDLPGLR 236 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 +D+ + L +E+R+R D + W+++R + S+G + R G +DI++++ + Sbjct: 237 QAIDNHLRGLSPFLHHEYRIRRRDGSYLWVLVRGVADTCSSG-LRRMAGSQSDISQRRAA 295 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+ NR + L + ++ ID+D++K IND LG Sbjct: 296 EEQLHHAARHDPLTGLANRARLSELLQQAVQRRQRPGAREAALLFIDLDRFKLINDSLGH 355 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD VLV + R+ L+ D LAR G+ F +L A M S+ +P+ Sbjct: 356 QTGDRVLVEVAERLSHCLRPGDHLARFGGDEFVALLDDLACMGDAERVAQRMLDSLHVPL 415 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 L E+ + V+ASIG A S + L+ A+LA+Y AK G + + + Sbjct: 416 RLPEQTLAVSASIGIAGLQESGQ-PLDPLQAADLALYRAKSAGKAQFARYSNELQQQAQR 474 Query: 706 MIK--EDLCLAVENSELYLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++ L A EL LVY PI ++G+EAL++W H + IS EF+ Sbjct: 475 QLELQNALAQAGARGELRLVYQPICQLDGNQPRLIGVEALLRWQH-QGREISPLEFIPCL 533 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE I A+ ++L++ + +W+ A P + +N++S+ L ++ + ++ + Sbjct: 534 EESGEILAVGDWVLQQACSQVRAWQ-LAGQPHLRCSVNLSSRQLQQSDFAARVADILRHS 592 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 PS + L +ES +M + ++ L L +GI L LDDFGT S L YL P + Sbjct: 593 GLPPSSLVLEITESQLMEDSAQNLACLRELASLGIQLALDDFGTGYSSLGYLKRFPLHII 652 Query: 882 KFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + G+ + AI R+II + ++ ++A+ + + + L GC Y Q Sbjct: 653 KVDKSFIAGAPQDSESLAITRAIIGLGHSLGLAVVAEGVEKQAQLDFLYSEGCHYAQGYW 712 Query: 940 VASPLGFNSILKLL 953 + P + +LL Sbjct: 713 FSQPRAPRELQRLL 726 >gi|222094092|ref|YP_002528149.1| sensor histidine kinase (sporulation kinase), c-terminal region [Bacillus cereus Q1] gi|221238147|gb|ACM10857.1| sensor histidine kinase (sporulation kinase), C-terminal region [Bacillus cereus Q1] Length = 925 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 146/569 (25%), Positives = 276/569 (48%), Gaps = 14/569 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446 + + Q + + E L + +G+ ++ D+ + P A++LG + Sbjct: 366 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 422 Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + I + + D + + FR D + I + Sbjct: 423 GKPSSMVFNGIEKGKKKQVASGCDEDW-NLYDKTEQFFR---KDQSSFPVEYVISSIK-E 477 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 +I+ + D+T++K+ E I +A+ D+LT +PNR DRLT L + + Sbjct: 478 GTEIVGEVITFKDVTQRKQMEEEIKYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 536 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND LG + GD +L + R+ + ++R G+ F I L + Sbjct: 537 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 596 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + ++ + S + P +L++ EI + SIG + + + T+ ++KNA+ AMY +K Sbjct: 597 SEKEVLKVVNRVIDSFSRPFHLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 656 Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G+ F + + + V ++ DL A+E EL + Y P I +I G+EALI+ Sbjct: 657 EISGSSYHFFSEGMDTRTFESVKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 716 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+H + G I +F+ IAEE +I I ++L+ R + W DQ P I + +N++++ Sbjct: 717 WNHQEHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 775 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 ++L ++ ++ + SP I+L +E++++ N E + + +L+ +GI+L +DDF Sbjct: 776 QFEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 835 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 GT S L YL +P T+K + S + T+ AI +II +AKN+ +IA+ + + Sbjct: 836 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 895 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++ L+ C +Q + P+ I KL Sbjct: 896 VEFLSARNCYLMQGYFFSRPMAAEDIEKL 924 >gi|229142706|ref|ZP_04271180.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] gi|228640769|gb|EEK97126.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] Length = 936 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 146/569 (25%), Positives = 277/569 (48%), Gaps = 14/569 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446 + + Q + + E L + +G+ ++ D+ + P A++LG + Sbjct: 377 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 433 Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + I + + D + + FR D + I + Sbjct: 434 GKPSSMVFNGIEKGKKKQVASGCDEDW-NLYDKTEQFFR---KDQSSFPVEYVISSIK-E 488 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 +I+ + D+T++K+ E I +A+ D+LT +PNR DRLT L + + Sbjct: 489 GTEIVGEVITFKDVTQRKQMEEEIKYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 547 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND LG + GD +L + R+ + ++R G+ F I L + Sbjct: 548 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 607 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + ++ + S + P +L++ EI + SIG + + + T+ ++KNA+ AMY +K Sbjct: 608 SEKEVLKVVNRVIDSFSRPFHLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 667 Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G+ F + + + + ++ DL A+E EL + Y P I +I G+EALI+ Sbjct: 668 EISGSSYHFFSEGMDTRTFESIKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 727 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+H + G I +F+ IAEE +I I ++L+ R + W DQ P I + +N++++ Sbjct: 728 WNHQEHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 786 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L ++L ++ ++ + SP I+L +E++++ N E + + +L+ +GI+L +DDF Sbjct: 787 QLEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 846 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 GT S L YL +P T+K + S + T+ AI +II +AKN+ +IA+ + + Sbjct: 847 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 906 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++ L+ C +Q + P+ I KL Sbjct: 907 VEFLSARNCYLMQGYFFSRPMAAEDIEKL 935 >gi|217957893|ref|YP_002336437.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus cereus AH187] gi|217066990|gb|ACJ81240.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus cereus AH187] Length = 925 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 146/569 (25%), Positives = 277/569 (48%), Gaps = 14/569 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446 + + Q + + E L + +G+ ++ D+ + P A++LG + Sbjct: 366 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 422 Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + I + + D + + FR D + I + Sbjct: 423 GKPSSMVFNGIEKGKKKQVASGCDEDW-NLYDKTEQFFR---KDQSSFPVEYVISSIK-E 477 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 +I+ + D+T++K+ E I +A+ D+LT +PNR DRLT L + + Sbjct: 478 GTEIVGEVITFKDVTQRKQMEEEIKYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 536 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND LG + GD +L + R+ + ++R G+ F I L + Sbjct: 537 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 596 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + ++ + S + P +L++ EI + SIG + + + T+ ++KNA+ AMY +K Sbjct: 597 SEKEVLKVVNRVIDSFSRPFHLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 656 Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G+ F + + + + ++ DL A+E EL + Y P I +I G+EALI+ Sbjct: 657 EISGSSYHFFSEGMDTRTFESIKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 716 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+H + G I +F+ IAEE +I I ++L+ R + W DQ P I + +N++++ Sbjct: 717 WNHQEHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 775 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L ++L ++ ++ + SP I+L +E++++ N E + + +L+ +GI+L +DDF Sbjct: 776 QLEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 835 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 GT S L YL +P T+K + S + T+ AI +II +AKN+ +IA+ + + Sbjct: 836 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 895 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++ L+ C +Q + P+ I KL Sbjct: 896 VEFLSARNCYLMQGYFFSRPMAAEDIEKL 924 >gi|291615262|ref|YP_003525419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291585374|gb|ADE13032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 814 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 154/724 (21%), Positives = 285/724 (39%), Gaps = 26/724 (3%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 + C + L+S L L R I ++ + + Sbjct: 95 PSSELLVWCLLMVLASLLRAALVYSPQTLRLDDAAAVQARLQKFRIGVVVAGAVWGSAGL 154 Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 ++ + L+ A + + + + + D+ Sbjct: 155 LLFPAHHPQYVMFLIFTLAGMTAGGVISFSADLVSAVAFSVLLSLPVAIRLFVTGDHLSE 214 Query: 368 QPALVGGLVLIVILIGFTVIQH--------VLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 + L L ++ I + + ER L + ++ Sbjct: 215 AMGVAVLLYLGFMIASIRRINQNICENIILRIEAAAREGKVRESEERYRLLLSHLPVGIF 274 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 ++ +A +L + + G + D+ L + R Sbjct: 275 HYNTDLVITYCNDRLAELLHNSVEHVIGLDMKLVK-----DQA-ILPSLRKALEGERSNF 328 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 + + + + W I P + NG I I I DITE K + E I AF D LT Sbjct: 329 EGHY-LATYSDAEGWAYITCTPFHDHNGQIAGGIAIVQDITEHKAAEEKINNLAFYDPLT 387 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR+ LDRL L SA ++ ID+D +K +ND LG +GD +L + +R+ Sbjct: 388 GLPNRRLLLDRLQHALASSARSGR-EGALLFIDLDNFKALNDTLGHDMGDLLLRQVAQRL 446 Query: 600 GELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITV 654 ++ D +ARL G+ F ++L + + + +P L+ E Sbjct: 447 ASCVREGDSIARLGGDEFVVMLEDLGGHDLEAAAQTEAVGEKILAMLGLPYQLVAHEYRC 506 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712 T SIG ++ ++ E+LK A++AMY AK G N V F + ++ +L Sbjct: 507 TPSIGATLFSGHELAKEELLKRADIAMYQAKQAGRNTVRFFDQQMQDAVTARVALEGELH 566 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++ + L Y + +G EALI+W HP+ G + +F+ +AEE +I I Sbjct: 567 KALDRQQFRLHYQIQVD-ASGRPLGAEALIRWMHPERGLVPPDQFIGMAEETDLILPIGQ 625 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++++ + +W+ A + + +N+++ + ++A + + P +KL Sbjct: 626 WVMDTACAQLKTWQQHAPTRDLVLAVNVSATQFHQLDFVFQVRATVQRHAIDPKLLKLEL 685 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +ES+++ N E + + L++IG+ +LDDFGT S L YL +P D +K + S + Sbjct: 686 TESMLLENIEDTIRTMNALKEIGVQFSLDDFGTGYSSLQYLKRLPLDQIKIDQSFVRDIA 745 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 I+ +II MA+N+ +IA+ + E + L GC + Q P+ Sbjct: 746 SDSNDREIVGTIIAMAQNLYLDVIAEGVETEEQRQFLQDNGCTHFQGYLFGKPVPVEQFE 805 Query: 951 KLLK 954 +L+ Sbjct: 806 AMLQ 809 >gi|302879164|ref|YP_003847728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581953|gb|ADL55964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 935 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 145/659 (22%), Positives = 280/659 (42%), Gaps = 23/659 (3%) Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359 + + P + + + ++ + R + LI + Sbjct: 290 TAFAPARQLQQHIWLVGAALGLLFAWLGWLMAGRIARPISLI----------SQAADKVA 339 Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 + L G V + ++ ++ + + + + + Sbjct: 340 GGDLEYELPARLGEGEVAHLSTAIHDMVVNLTHEIKQRKEAEQGLRLSAKVFESNTEAIM 399 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRG 477 D ++ V I G + + G L + F L + Sbjct: 400 ITDAEQNIVMVNQAFTQITGYGADEVLGQRPKLLSSGRHGPEFYEAFWHALRA-----ND 454 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + E + + + + I + + I Y+ + DITE+KK E I A D Sbjct: 455 LWRGEIWNKRKNGEIFPEWVTISALRDETSQISHYVAVFLDITERKKEEERINYLANYDV 514 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR DR+ + + N + V+ ID+D +K IND LG +GD +L + Sbjct: 515 LTGLPNRYLLSDRIEQAFSSAQRN-NFKVAVLFIDLDYFKNINDSLGHDIGDALLKLVAA 573 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ D +ARL G+ F +L ++S ++ A M +S+ L E ++++T S Sbjct: 574 RLKTCLRRSDTIARLGGDEFVALLSELDSSEEVIFVAEKMIESLTEKFTLGEYQLSITPS 633 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAV 715 IG + TS E+L+NA+LAMY AK G N+ + + R +R+ ++ L +A+ Sbjct: 634 IGICIYPDDGETSVELLRNADLAMYQAKDDGRNNFKFYSPDMNRKALERLKLETFLRVAI 693 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 +L + Y P + ++ ++ G+EAL++W HP+ G IS + F+ IAEE +I I ++L Sbjct: 694 VQQQLSVYYQPKVSVLSGKMTGMEALLRWQHPELGFISPAVFIPIAEETGLINEIGDWVL 753 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W+ Q + I +N++++ L + + ++ + + L +ES Sbjct: 754 RQSCLQARLWQAQGYDI-VPIAVNLSARQLKQDNFAARVVTILREAGLDAHYLVLEITES 812 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 ++M E +L +LR G+ L LDDFGT S LS L +P D++K + S + Sbjct: 813 MLMSTGESGLQILEQLRDDGVRLALDDFGTGYSSLSRLKNLPLDSLKIDQSFVRDIVTDP 872 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 +I+ + +A + + A+ + + + + + C+ Q + P+ + ++K Sbjct: 873 NDASIVSATAVLAHALNLKVTAEGVETQEQLDFIRMLNCEEYQGYLFSRPIPASEVVKY 931 >gi|206974300|ref|ZP_03235217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Bacillus cereus H3081.97] gi|206747540|gb|EDZ58930.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Bacillus cereus H3081.97] Length = 936 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 146/569 (25%), Positives = 277/569 (48%), Gaps = 14/569 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446 + + Q + + E L + +G+ ++ D+ + P A++LG + Sbjct: 377 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 433 Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + I + + D + + FR D + I + Sbjct: 434 GKPSSMVFNGIEKGKKKQVASGCDEDW-NLYDKTEQFFR---KDQSSFPVEYVISSIK-E 488 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 +I+ + D+T++K+ E I +A+ D+LT +PNR DRLT L + + Sbjct: 489 GTEIVGEVITFKDVTQRKQMEEEINYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 547 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND LG + GD +L + R+ + ++R G+ F I L + Sbjct: 548 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 607 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + ++ + S + P +L++ EI + SIG + + + T+ ++KNA+ AMY +K Sbjct: 608 SEKEVLKVVNRVIDSFSRPFHLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 667 Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G+ F + + + + ++ DL A+E EL + Y P I +I G+EALI+ Sbjct: 668 EISGSSYHFFSEGMDTRTFESIKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 727 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+H + G I +F+ IAEE +I I ++L+ R + W DQ P I + +N++++ Sbjct: 728 WNHQEHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 786 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L ++L ++ ++ + SP I+L +E++++ N E + + +L+ +GI+L +DDF Sbjct: 787 QLEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 846 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 GT S L YL +P T+K + S + T+ AI +II +AKN+ +IA+ + + Sbjct: 847 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 906 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++ L+ C +Q + P+ I KL Sbjct: 907 VEFLSARNCYLMQGYFFSRPMAAEDIEKL 935 >gi|74316103|ref|YP_313843.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74055598|gb|AAZ96038.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation [Thiobacillus denitrificans ATCC 25259] Length = 738 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 148/664 (22%), Positives = 292/664 (43%), Gaps = 26/664 (3%) Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369 + + L L + + + + V+++ I + + D ++ Sbjct: 75 VILLDLGMPDLSGAEVLRFVADRSADTPVIVVSGD-----STIDAAIRALRGGAADFVRK 129 Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 +L + T + + Q + + V S D ++ D Sbjct: 130 PYEPEELLRRVDNTLTRRRLERENNHILQRLQQSEKWHRFLVNSSPDFIYTLDCDGRFTF 189 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV---- 485 + ++LG + G ++ IH D + + R E R+ Sbjct: 190 VNDRVESLLGYTREDLLGQ--HYSTIIHEEDLARAEHVFNERRAGDRSARNIEIRLKCNP 247 Query: 486 -----RAADNQFHWMIIRIRPMSNSN-----GDILRYIGIANDITEQKKSLEGILCNAFQ 535 R + + + + M + + + G+A D+TE+K++ E + A+ Sbjct: 248 GMRRPRLMNGRCKAVELTATGMYDEDATLFERRFIGSYGVAKDVTERKQAEETVHYQAYH 307 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D LTG+PNR F D L +L + V+ +D+D +K IND LG +GD++L+++ Sbjct: 308 DLLTGLPNRALFRDHLALMLAQAKRSHKT-LAVLSLDLDHFKVINDSLGHTIGDELLLAV 366 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 R+ + L+ D LARL G+ F ++L + + + + + ++ P+ + EI ++ Sbjct: 367 GARLRQCLREGDTLARLGGDEFAVLLPTLLSRGDVEQICRKIIQVLSRPVYVKGHEIYIS 426 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCL 713 SIG +++ AE+AMY AK +G + ++ + R+ I+ DL Sbjct: 427 VSIGACVAPDDGEMIDSLIRQAEIAMYQAKAQGRSRLQFWEAGMQAPYSERMQIEADLRR 486 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+ +E L Y P + + E+ G EAL++W HP+ G +S +EF+ +AEE +I I + Sbjct: 487 ALARNEFVLFYQPQVDTVSGEVRGFEALLRWWHPQRGFLSPAEFIPVAEESGVIVPIGDW 546 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +L + + WR P + + +NI+++ L + E + + +I+L + Sbjct: 547 VLREASAQMAEWRRAGL-PQVRLSVNISARQLESPDFVESVMRAVQVHALDGQQIELEIT 605 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892 ES++M + E + + LGRL GI L +DDFGT S YL P T+K + S + Sbjct: 606 ESLLMRDFEANAIKLGRLSASGIRLAIDDFGTGYSSFKYLSRFPIHTLKIDQSFIQELER 665 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 E+ ++I+ +++ M + + ++A+ + + + L +M C +Q + + P+ + L Sbjct: 666 EENLSIVNAMVAMGRGMNLNVVAEGVETQSQLACLQQMQCHEMQGHYYSVPMSGHDATAL 725 Query: 953 LKER 956 L Sbjct: 726 LGRH 729 >gi|256830096|ref|YP_003158824.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum DSM 4028] gi|256579272|gb|ACU90408.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfomicrobium baculatum DSM 4028] Length = 1158 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 159/655 (24%), Positives = 290/655 (44%), Gaps = 10/655 (1%) Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364 ASI ++ + + +R LL A L L + Sbjct: 503 PAMASIFGYDSLDSLMAGAKGFLQRAISSSDRVRLLSQALKLGTAQNFELDAFMAGGKKT 562 Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 I I ++ V + + S + Sbjct: 563 WISINMRTVKRSDGSISHLEGSVRDVSKRKKAERRLAIQKGLFQQLFDNSPQGILLLGKD 622 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + P ++ G A +H + +H + D + + + + E + Sbjct: 623 GAPMDINPSFTSLFGYARSDLHAL---FEMLLHPDSLDESYAFVSTVLSG--TSVSTETQ 677 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 R D + + + P +G I I +DI+E+K + A +DNLTG+PNR Sbjct: 678 RRTKDGRIIPVSMLGYPYV-LDGTISGAFFIFSDISERKNYEAQLTRQALRDNLTGLPNR 736 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 F+DRL + + R V++ID+D +K++ND LG GD +L + R+ L+ Sbjct: 737 VLFMDRLNRAMTRQQRNGEYRFAVLMIDLDSFKRVNDTLGHQAGDHLLQEVAARLTHCLR 796 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D +AR+ G+ F ++L N+ + + +I P+ + +R++ V+AS+G T Sbjct: 797 TMDTVARMGGDEFAVLLEDFQNNHEAIGITRRLLDTIRQPLKIQDRDVLVSASVGVVLQT 856 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYL 722 + + +++L++A+++MY +K G N + F S V ++ DL A+ E L Sbjct: 857 ARYTSPNDLLRDADISMYRSKELGKNQFKVFSKSMYEQVVQTVQLENDLRQALVEDEFEL 916 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 + PI L +++ G EALI+W+HP+ G++ EF+ +AEE ++ I +++ R R + Sbjct: 917 FFQPIYALSGQKLRGFEALIRWNHPQRGHLPPGEFIPVAEETGLVTEIGKWVMRRGCRVL 976 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W+ Q I + +N++ KDLL L + L+ +T +KL +E+ VM NPE Sbjct: 977 AGWQSQFPGLDISLSLNLSPKDLLQASLVPVLTELLHETGLDARHLKLEITETAVMDNPE 1036 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 ++ L RL+K+G + +DDFGT S LSYL +P D +K + S + + I++ Sbjct: 1037 QATSRLERLQKMGFQIAMDDFGTGYSSLSYLQRLPIDILKIDRSFVQTMLENPNNLEIIK 1096 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +II + K ++ I+A+ + ++ L +GCD Q + P+ L+ Sbjct: 1097 AIIGLGKILDLRIVAEGVETRQQLETLQELGCDLAQGFLLGRPMSKEQTESLISA 1151 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 6/148 (4%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSM 445 + ++ + + ++ + + ++ + D ++ P +A+I G S S+ Sbjct: 458 LALAISRNATEKALSQSEKKHRAIFENATEGIFQISLDHDLLSANPAMASIFGYDSLDSL 517 Query: 446 HGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + +L I +DR L + + +E A + W+ I +R + Sbjct: 518 MAGAKGFLQRAISSSDRVRL---LSQALKLGTAQ-NFELDAFMAGGKKTWISINMRTVKR 573 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCN 532 S+G I G D++++KK+ + Sbjct: 574 SDGSISHLEGSVRDVSKRKKAERRLAIQ 601 Score = 46.1 bits (108), Expect = 0.029, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 12/155 (7%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + +I+ + + + + + D D + + + G+ Sbjct: 158 LILVLIRDISDRAMAEEALLGVQQHLDHIIEFLPDATLVVDNEHRVIAWNRAMEGMTGVP 217 Query: 442 SGSMHGPIRNWLP---YIHI---------NDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 + G Y H D + + + G F + Sbjct: 218 KEEILGKSGYEYGTPFYGHPRPILLDFIGKDPSHDYPMYEPTQSNLEGLATEIFVPLLSG 277 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + ++ + + + +G+I I DIT++K+ Sbjct: 278 GRGAYVWAKASALYDKDGNIAGAIQTIRDITDKKR 312 >gi|307153992|ref|YP_003889376.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] gi|306984220|gb|ADN16101.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 905 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 147/575 (25%), Positives = 279/575 (48%), Gaps = 9/575 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + R + + DI+ D +P + ILG S + Sbjct: 331 ELAQRQRVEMTLRQSERRFRALIENAADIIVILDAQLRFSYLSPSVERILGYHSHELMHT 390 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNG 507 + IH ++ F L+ + L E+R+R N + + + + N + Sbjct: 391 --SIFTLIHPDEAAEFTKALNRIIENPATTLNPLEYRIRTYHNTWLIVETLLSNLLN-DP 447 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + + ++IT++K+ + +A D LTG PNR +DRL + Sbjct: 448 CVQGIVLNCHEITQRKQIEAQLRHDALHDTLTGFPNRALLMDRLAQAIKREKRRFGSNFA 507 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ +D+D++K +ND LG +GD++LV+ R+ ++ + D +ARL G+ F I+L Sbjct: 508 VLFLDLDRFKLLNDSLGHLIGDELLVAFAERLQQVRRSTDTIARLGGDEFVILLEDLCKV 567 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + + ++ + ++E+ +TASIG A +++L++A+ AMY+AK+R Sbjct: 568 EEAILVAERINQVLSSSFIIDQQEVFITASIGVAFSAYRYQQPAQILRDADTAMYYAKNR 627 Query: 688 GGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G E F S ++ ++ DL A+E EL + Y PII L + G+EAL++W Sbjct: 628 GRARYEVFDPSMHIHALRQLHLENDLRRAIERDELVVYYQPIISLTTGSLQGVEALVRWR 687 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKD 804 HP+ G +S +EF+ IAEE +I A++ ++L + W+ + PI + +N++ + Sbjct: 688 HPQQGMVSPAEFIPIAEETGLIVALDQWVLNAACEQMRLWQQEYPYLEPITVSVNLSGRQ 747 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 +L + + +++++T +KL +E+V++ NP + +L +L + I + LDDFG Sbjct: 748 FSQPDLIKKIDSILNQTGLEGKYLKLEITETVLIENPNSAAEMLQQLIERKIQVCLDDFG 807 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L YL P D +K + S ++ + R +I+R+II +A+ + +IA+ + + Sbjct: 808 TGYSSLGYLHRFPLDILKIDRSFVSNIEQNRSNSSIIRTIITLARELGIRVIAEGVETQE 867 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L +GC Y Q + P+ + L+ + Sbjct: 868 QRLFLQSLGCHYGQGYWFSPPIDSTKLSNLMTNKL 902 >gi|119897781|ref|YP_932994.1| putative signaling protein [Azoarcus sp. BH72] gi|119670194|emb|CAL94107.1| conserved hypothetical signaling protein [Azoarcus sp. BH72] Length = 1089 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 159/576 (27%), Positives = 279/576 (48%), Gaps = 15/576 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVW----DWDIVRDRVTTTPDIATILGLASGS 444 L Q + + E ++ A+ S + + D + P G + Sbjct: 510 RTLRARVEQQQLAATLELRNRAIEESTNAIVISHADRAADNPIIYVNPAFTVTTGYGADE 569 Query: 445 MHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G +L I + D+ + ++ G + R D Q W I + + Sbjct: 570 VLGRNARFL--IDNDWDQPAVERLREAVREG--GDARVTLRTYHKDGQLLWNEISLASIR 625 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ G++ +I I ND+TE+ + + A D LTG+ NR DR+ + +A D + Sbjct: 626 DAQGEVSHFIAIFNDVTERVRYEAELEQQATHDALTGLANRNLLNDRMQRAIIRAARDGH 685 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 VM++D+D++K IND LG A GD +L RR+ ++ D +ARL G+ F +++ Sbjct: 686 A-VAVMLLDLDRFKLINDSLGHAAGDALLQETARRLSASVRRGDTVARLGGDEFMVVMSD 744 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + A A + +S+A P+ L REI T SIG + + ++ +LK+A++AMY Sbjct: 745 MSAEDAAAALAAKVLESLAEPMLLNGREIVATGSIGVSLYPRDGEAAATLLKHADVAMYR 804 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + + R+ ++ L A+EN EL L Y P + L D ++G EAL Sbjct: 805 AKELGRNRFQFYAPEMNERILERLELENSLRRALENDELELHYQPKVSLRDGRVIGAEAL 864 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G +S ++F+ +AEE +I I ++++ R + +W D P I + +N++ Sbjct: 865 IRWRHPQLGMVSPADFIPLAEETGLIVPIGEWVVDHACRQLRAWLDAGL-PQISVAVNVS 923 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ +L + ++ P ++ + +ES VM PER+ L L+ IG+ ++LD Sbjct: 924 ARQFQHEQLTHVLARALAAHRLPPGQLHVEVTESAVMCEPERTIFTLRELKNIGVRISLD 983 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT L+YL P D++K + +T + + AI I+ +A ++ T+IA+ + Sbjct: 984 DFGTGYCSLNYLKRFPIDSIKIDRCFVTDLATSAEDAAIALMIVSLAHSLNQTVIAEGVE 1043 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E + L R GCD +Q + PL +LL Sbjct: 1044 NEAQLDFLRRHGCDEMQGFLFSRPLPAAEFARLLAA 1079 >gi|117918591|ref|YP_867783.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] gi|117610923|gb|ABK46377.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] Length = 1077 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 161/643 (25%), Positives = 300/643 (46%), Gaps = 16/643 (2%) Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 +Y + A+ L +I + + + I + P L + Sbjct: 429 LLGLYLFSAIFTAAITLWLGRKIIRSFMVKIT-KIANDMQQMAADPQLNINIDASGTDEL 487 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + Q + Q R + S + + D P + I G + Sbjct: 488 ARMAQAMNRMISERQKANHALSRAAAVFNYSAEGIMVTDADNHIELINPAFSQITGYSLE 547 Query: 444 SMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L H + + ++ ++ G+ + E + D Q + + I + Sbjct: 548 EVKGRSPSILSSNRHP--HHYYTAMWEAL--HKEGKWEGEIWNKRKDGQVYPEYLAITVV 603 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 N G+I+++IG+ DI+++K+ + + A D LTG+PNR+ F +RL + L+ D Sbjct: 604 RNEQGEIIQHIGLFMDISKRKQYEQDLWYQANFDTLTGLPNRKLFNERLQHEIQLAQHDS 663 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + +++ID+D++K INDV G A GD +L + +R+ + D +AR+ G+ F +IL Sbjct: 664 R-KLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLENIAGKNDFVARIGGDEFVLILP 722 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 N I A + +++A P NL EREI ++AS G + + S + +N E+AMY Sbjct: 723 RVTNEFAIEHMASRIIETLATPFNLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAMY 782 Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N+ + F ++ R+ +++ L AV E L Y PI+ + +I +EA Sbjct: 783 QAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQDEFTLFYQPIVDMKTGQICSVEA 842 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W P G I +F+ IAEE +I+ + ++L + D+ W+ + + IN+ Sbjct: 843 LIRWQDPDLGLIPPDQFIAIAEETGLIEPMGEWVLNQAMHDLRQWQHMGLN--LNVAINV 900 Query: 801 ASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +S+ ++ + +Q ++ +P + + +ES++MG+ L +R +G Sbjct: 901 SSRQCINTRGIGFDQVLQECFNRHHINPRNVHIEITESMLMGDASHCLSTLESIRHLGSQ 960 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915 + +DDFGT S LSYL P +K + S + + E ++++I+ M +++E ++A Sbjct: 961 IYIDDFGTGYSSLSYLKKFPISVIKIDRSFVEHALENCSNANLVKAIVMMGQSLEMELVA 1020 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + I E + L +GC Y Q ++ PL F+ I LL + P Sbjct: 1021 EGIETEAQWQFLRDLGCHYAQGYLLSKPLPFDEITPLLGQTLP 1063 >gi|295402578|ref|ZP_06812526.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] gi|294975377|gb|EFG51007.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] Length = 953 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 157/630 (24%), Positives = 286/630 (45%), Gaps = 24/630 (3%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALV------GGLVLIVILIGFTVIQHVLATGY 395 P + + AL G V L +Q V+ + Sbjct: 327 PTFTPFSFAELVTKDRYAPMHPATFSMVALSEKNRHRAGSGASVSLPIPKSLQGVMTLAH 386 Query: 396 FSQGIFSDGERQSL-------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + ER + + DIV+ D+ + P +LG + Sbjct: 387 LLSATSREMERLHVCRQISQSLFEHNTDIVYSTDLHGNLTNVNPAFEKVLGYKREEVLHT 446 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L YIH ND + + E + + I+ P+ +G Sbjct: 447 NA--LKYIHPNDVRRVSMHFYRALRGKIQYYNLE--IPTKSGKPLLFQIKNVPIV-VDGK 501 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + GI DITEQKK+ E I A+ D T +PNR F++ +T L+ + N + V Sbjct: 502 KVGIYGIGRDITEQKKAEEKISYLAYYDPDTHLPNRTKFMEIITEQLEKAKR-KNRKLAV 560 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + ID+D++K+IND +G GD++L + +RI +L L R G++F ++L + +S Sbjct: 561 VFIDLDRFKRINDSIGHYAGDEILKQVVQRILHVLPIEAHLGRFHGDKFCLLLTGQIHSE 620 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 K+ + A + K + PI +E +TASIG + + S + + +LKNA++A+ AK G Sbjct: 621 KVFETATRIAKEVTKPIVYDGKEFFITASIGISFYPSDGVDAHSLLKNADIAVSRAKRSG 680 Query: 689 GNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 GN V+ + +++ R+ ++ L A+E EL+L Y PI+ + +IVG EALI+W H Sbjct: 681 GNRVQFYSAKMNDETLHRLEMERYLRKALEKRELFLCYQPIVDITTGKIVGNEALIRWRH 740 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 PK G + EF+ +AEE +I I ++LE + W+ + I +N+++ Sbjct: 741 PKLGLVRPDEFISLAEETGLIHEIGRWVLETACKQTKKWQA-LGNQQLSIFVNVSAAQFQ 799 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 ++ ++++ SP + L +E+ ++ N S ++ L++IG+ + +DDFG+ Sbjct: 800 HESFINDVKRALAQSQLSPDCLHLELTENSMLRNLHHSIQVMKELQRIGVGIAIDDFGSG 859 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 + SYL +P + +K + S + IAI++++I M + I+A+ + + + Sbjct: 860 YASFSYLKNLPANILKIDRSFIKQIHTNSSDIAIVKAMITMGHGLGMKIVAEGVETDEHL 919 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L + C Y+Q + P + + Sbjct: 920 QLLKMLRCHYVQGYALYRPATAEELSAHIT 949 >gi|127514356|ref|YP_001095553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella loihica PV-4] gi|126639651|gb|ABO25294.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella loihica PV-4] Length = 1484 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 134/563 (23%), Positives = 265/563 (47%), Gaps = 14/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + D + + A + + V D + +ILG+++ + + + Sbjct: 925 QRMLEDDVKLLAQAFANTSEGVLILDADERVRVSNKAAQSILGMSADDLIDRY--FAQLV 982 Query: 457 HI-NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H DR ++ + E + A+ + + + M + G+I Y+ + Sbjct: 983 HSSEDRS---DEINILLEQGI-TWTGEHEFQCAEGLICPVWLNLSTMKDDRGNISHYVAV 1038 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DITE+K++ + A D LTG+PNR F RL + + ++ + ++ +D+D+ Sbjct: 1039 FSDITERKQTEADLRRLANYDVLTGLPNRSLFAARLAKCIHRAEQTED-KLALIFLDLDR 1097 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G ++GD +LV R+ + L R G+ F I++ + ++ Sbjct: 1098 FKNVNDSYGHSMGDALLVEAASRLQSCVSENHTLCRFGGDEFVILMRDMVDIDEVNHLCE 1157 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 A+ + I P L RE ++ SIG + W ++KNA+ AMYHAK G + + F Sbjct: 1158 ALIRQIEKPFELYGREFFISTSIGVSLWPDDAKQPEVLIKNADQAMYHAKEEGRGNFQYF 1217 Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752 ++ + ++ +L A++ E L + P I + D+++VG+EAL++W HPK G I Sbjct: 1218 SAERNAEALYHLKLEAELRKAMDRQEFELYFQPQIDILKDDKVVGMEALLRWHHPKEGYI 1277 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AE +I I+ +++++ W + + + +N+++ + + Sbjct: 1278 RPDIFIRVAESCGLIIEIDRWVIKQACLQGAKWAEHFGDE-LKLSVNVSAVHFRQPDFIQ 1336 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 +Q + ++ + L +E V+M ++ L LR+IGI + +DDFGT S L+Y Sbjct: 1337 DVQQALKESGMPAKMLGLEITEGVLMKELHVAKDHLKALREIGIEVAIDDFGTGYSSLAY 1396 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L T+K + S + E AI SII +A+N++ ++A+ + + ++++ Sbjct: 1397 LRSFDVSTLKIDRSFLIDIATNEADQAIASSIIELARNLKLKVVAEGVETQEQLEQVFSR 1456 Query: 931 GCDYIQDSHVASPLGFNSILKLL 953 GC IQ + A P+ + K L Sbjct: 1457 GCYIIQGYYFAKPMTIDEFEKYL 1479 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 79/232 (34%), Gaps = 37/232 (15%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + A ++ + +R ++ GS +W+W + + G Sbjct: 790 RQKQIGAFRRVNKKLKESEDRLRQSLRGSDSELWEWHSESETFL----LENRGGYFPDRG 845 Query: 446 HGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + I+ +D++ T + + RL ++R R D + W +R R + Sbjct: 846 DAFELKMDEFPIYADDQEKVFTAWKRLLSKQDDRLDVDYRYRRPDESWGWTRVRGRALEF 905 Query: 505 S--NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +G + + GI DIT Q+ + + A Q+F Sbjct: 906 DPVSGRVKKVAGIYTDITTQRMLEDDVKLLA-----------QAF--------------A 940 Query: 563 NLRPTVMVIDIDKY-----KKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 N V+++D D+ K +LG++ D + + + D + Sbjct: 941 NTSEGVLILDADERVRVSNKAAQSILGMSADDLIDRYFAQLVHSSEDRSDEI 992 >gi|218442025|ref|YP_002380354.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] gi|218174753|gb|ACK73486.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] Length = 897 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 151/574 (26%), Positives = 290/574 (50%), Gaps = 9/574 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + +R + + DI+ D +P I +LG + + G Sbjct: 323 ELAQRQQIETALRQREQRFKALIENAADIIIILDAQFCFSYLSPSIKKVLGYSCEELIGQ 382 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + L IH ++ FR L+ + + + E+ R + + M ++ + N G Sbjct: 383 --SILTLIHEDEEFVFRETLNKVIENPEISVSEVEYHFRTRHHTWSIMEGVVKNLLNEPG 440 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + + ++IT++K + + +A D+LTG+PNR +DRLT ++ Sbjct: 441 -VEGIVLNFHEITQRKLAEAQLRHDALHDSLTGLPNRALLMDRLTQAINREKGRFYTHFA 499 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ +D+D++K +ND LG VGD +L+S + ++ +F D +ARL G+ F I+L + Sbjct: 500 VLFLDVDRFKLLNDSLGHLVGDQLLISFANCLKKIRRFTDTIARLGGDEFVILLEDLSEV 559 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + + ++ + ++EI +TASIG A SS S++L++A+ AMY+AK+ Sbjct: 560 GQAIKVAQRINEILSSSFLIDDQEIFITASIGIAFSNSSYEHPSQILRDADTAMYYAKNN 619 Query: 688 GGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + F S ++ ++ DL A+E EL + Y PII L + ++G+EAL++W Sbjct: 620 GRGKYQVFDSSMHIHALKQLQLENDLRRAIERDELVVYYQPIICLKNGTLIGVEALVRWQ 679 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKD 804 HP+ G IS +EF+ IAEE +I ++ ++L + + W+++ + I + +N++ + Sbjct: 680 HPQEGMISPAEFIPIAEETGLIIELDQWVLNTACQQMRFWQEKYSDFKSITLSVNLSGRQ 739 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 +L + + ++++ +KL +E+V++ NP + +L +L + +++ LDDFG Sbjct: 740 FSQPDLIKNIDNILTQNKLEKQYLKLEITETVLIENPNSAAEMLEQLIERKVTVCLDDFG 799 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L YL P D +K + S ++ I+R+II +A+ +E +IA+ I E Sbjct: 800 TGYSSLGYLHRFPLDVLKIDRSFVSNIETNTSNSTIIRTIITLARELEIEVIAEGIETEQ 859 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L +GC Y Q + P+ ++ L+ + Sbjct: 860 QREFLQSLGCHYGQGYWFSPPVDGRELISLVNHK 893 >gi|116054303|ref|YP_788748.1| hypothetical protein PA14_07500 [Pseudomonas aeruginosa UCBPP-PA14] gi|115589524|gb|ABJ15539.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 1245 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 159/568 (27%), Positives = 276/568 (48%), Gaps = 10/568 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + ++ + + + V D + + I G + G + L Sbjct: 675 RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + + + R G Q E R + + + I + N G+I ++G+ Sbjct: 734 GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F RL LD + +++ V+ ID+D++ Sbjct: 792 ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG +GD +L ++ R+ + L+ D +ARL G+ F I+L + A Sbjct: 851 KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P E V+AS+G A + + ++KNA+ AMY AK RG + +E + Sbjct: 911 LLNAFTAPFQAEGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++R+ ++ +L A+E EL L Y P + L +VG EAL++W HP +G IS Sbjct: 971 RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I + ++L + + W+ + P + +N+A L +L E + Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLGHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + L+ ++ PSR++L +ES +M E + +L L+++G+ L +DDFGT S LSYL Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G AI R+II + ++++ T+IA+ + E LT GC Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209 Query: 933 DYIQDSHVASPLGFNSIL-KLLKERFPL 959 + IQ ++ PL K LK R P+ Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237 Score = 79.2 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L+ V I++ + + + V + + + V I W+ Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327 Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + +R +P +LG G W +H D + S R Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++R+ AAD + W+ + P+ + G L G+ DITE K + + + Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--AQGRDLLLRGLMIDITEAKLTEQAMR 434 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W L + L L N + G +L VI+ Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448 + + + E+ + A D + + + + G + Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606 Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + DR +++ + + VR + + + + +G Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661 Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534 + + IA DITE++ E + A Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687 >gi|91794771|ref|YP_564422.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91716773|gb|ABE56699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella denitrificans OS217] Length = 1502 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 145/550 (26%), Positives = 273/550 (49%), Gaps = 10/550 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + + V ++ + P I G + +L I RD + + Sbjct: 958 VLYSMNEAVVVGELDYRVRSVNPAFTRITGFEPDEVTNKHFLFLA-ISSQGRDFYNQVET 1016 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + ++ E ++R D + + I + ++ G+ ++ + DIT +KK+ E + Sbjct: 1017 QLLKHK--HWAGELKIRTRDKKGILAWLEINQVIDNKGETSHFVAVFTDITARKKAEEDL 1074 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LT +PNR F DRL + + + N+ + +D+D++K IND +G +GD Sbjct: 1075 RILANFDPLTHLPNRTLFQDRLDQAITKAHRNQNI-VALFFLDLDRFKHINDSMGHHIGD 1133 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L ++ R+ ++ D +ARL G+ F IIL + A + + P L + Sbjct: 1134 LLLKAVAHRLQRAVREGDTVARLGGDEFTIILEGVTKLNAVTLVAEKILNAFQKPFLLDD 1193 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707 + +T++ SIG + + S ++K A+ AMYHAK G N+ + + + + + V + Sbjct: 1194 KNLTISPSIGISLYPDDANDVSSLIKYADTAMYHAKSVGRNNFQFYTDQLNQYATRHVQL 1253 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L LA++ +EL LVY P + ++IVG EAL++W++P G IS +EF+ +AEE I Sbjct: 1254 EAGLKLAIQENELSLVYQPKYDIFTKKIVGFEALLRWNNPSLGFISPAEFIPLAEETGFI 1313 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I + + + + W + + I +N++++ L ++ ++ ++ + S Sbjct: 1314 NQIGHWAINQACNQLAQWHELGFR-DVSIAVNLSARQLK-ADIISTIEVALAVSGLPASA 1371 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K + Sbjct: 1372 LELELTESMIMGNPQDSVAILSQLKSLGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1431 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI +II +A +++ +IA+ + + L GCD +Q ++ PL Sbjct: 1432 VRDITEDPDDAAITSAIIALAHSLDLNVIAEGVETPEQLDFLLNEGCDQVQGFLLSKPLS 1491 Query: 946 FNSILKLLKE 955 L LLK+ Sbjct: 1492 AKDALALLKK 1501 Score = 112 bits (281), Expect = 3e-22, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 14/164 (8%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQG-------IFSDGERQSLAVLGSGDIVWD 420 ++ ++L ++Q + + Q I + ER LA+ SGD +WD Sbjct: 789 IYRTTLAYIIYILLGCIFILQAIHSRQKKQQKQNEFETSIKASEERLKLALWASGDGMWD 848 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 W+I ++V T S+ + IH DR + +L+ + + Sbjct: 849 WNIPDNQVFRTNMS------NPQSLSRSKSTLINSIHPEDRPKVQLLLNEHIAGNSEFYE 902 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523 E+R+R + W++ R + + ++NG +R G DIT +K Sbjct: 903 AEYRIRDEVGSWIWLLDRGKVVEKDTNGAPIRMAGTHKDITSRK 946 >gi|322418862|ref|YP_004198085.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320125249|gb|ADW12809.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M18] Length = 705 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 159/588 (27%), Positives = 289/588 (49%), Gaps = 23/588 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++G+ V + A+G Q + + A + W+WD+ + + ++ +I L Sbjct: 119 ILGYRVNYMLRASGALEQ-LRESRAGLAHAQSLAHIGSWEWDLTTGEIRCSEEVYSICCL 177 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G L +H DR + +D + RR L +++R+ + + + Sbjct: 178 DRDRRDGNPI--LDPVHHQDRTFVQGSIDDAIA-RRAPLSFDYRIML-EGGERTLHAELV 233 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + G+ + G DITE+K++ E I A+ D LTG+PNR+ FL +L L + Sbjct: 234 TVLDEEGEAVCLTGTIQDITERKRAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANR 293 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR--------- 611 +D + V+ +D+D++K +ND LG VGD +L + R+ ++ D LAR Sbjct: 294 NDRM-LAVLFLDLDRFKLVNDTLGHGVGDRLLQDVADRLLRCVRRSDCLARAEGDCPPSL 352 Query: 612 ---LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 L G+ F I+L + +A A + +++++P +L +E+ V+ SIG + + Sbjct: 353 VSRLGGDEFTIMLSDIEHFQDVAKVARRILEAVSVPYSLEGQEVFVSTSIGISLYPFDAS 412 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726 T+S++++NA+ AMY AK +G N + + S ++ L A++ E + Y P Sbjct: 413 TASDLIRNADGAMYQAKEQGRNGYQIYDESMNAKALERIILESQLHRALKEGEFAVYYQP 472 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I E+VG+EAL++W+ + G + F+ +AEE+ ++ I+ ++ R W Sbjct: 473 QISCRTGEVVGIEALVRWNSKELGVVEPCRFLPLAEEIGLVIQIDQLVMRESCRQHKLWI 532 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 DQ PP+ I +NI+ + L NEL E + A++ ++ P ++L +E V+M + ER+ Sbjct: 533 DQGL-PPVGIAVNISGQQFLKNELLETVTAVLEESGLDPGLLELELTEGVLMAHTERTVK 591 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 L L+ +G+ L +DDFGT S LSYL P D +K + + + AI + I Sbjct: 592 TLQALKGMGVRLAIDDFGTGFSSLSYLKRFPLDVLKIDRTFIKDITSDPDDAAITLATIE 651 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 MA ++ +IA+ + + L GCD Q + P+ +L+L Sbjct: 652 MAHTLKLLVIAEGVETRPQLDFLASNGCDTYQGYLFSRPVPPEELLRL 699 >gi|291614471|ref|YP_003524628.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291584583|gb|ADE12241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 807 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 140/567 (24%), Positives = 260/567 (45%), Gaps = 16/567 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 + F R + S + + D + G + + G R + Sbjct: 239 ERKRFETDLRIAATAFESQESLMITDANSVILRVNNAFCKCTGYTTEEVVGKTPRIFKSG 298 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D++ +R + DS R G + E R + + + + I + ++G + Y+G Sbjct: 299 RH--DKEFYRAMWDSI--NRTGSWKGEIWDRRKNGETYPKWLTISAVRGNDGCVTHYVGS 354 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DITE+K + E I AF D LT +PNRQ LDRL L +A + + ++ ID+D Sbjct: 355 HVDITERKAAEEQIRRLAFHDPLTHLPNRQLLLDRLQQSLISTARNGK-KGALLFIDLDN 413 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKI 630 +K +ND LG A+GD +L R+ ++ D +AR+ G+ F ++L + + Sbjct: 414 FKTLNDTLGHAMGDMLLQQAAERLTSCMREGDTVARIGGDEFVVMLEELSGQAIEAAEQT 473 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + +++ P +L + SIG ++ + E+LK A++AMY AK N Sbjct: 474 EVVGEKILAALSQPYHLDNHTFRSSGSIGATLFSGDHQEAEELLKQADIAMYQAKKADRN 533 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + F + ++ +L A+E+ + L Y + + G EALI+W+HP Sbjct: 534 TLRFFDHKMQDAINARAELEAELHKALEHQQFELHYQIQVDCASRAL-GAEALIRWNHPT 592 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G ++ ++F+ +AEE +I I L+++E + +W + + +NI+++ + Sbjct: 593 RGLVAPAQFIPLAEETGLILPIGLWVIETACAQLHAWARDEKTRHLVLAVNISARQFHQS 652 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + ++A + + P+ KL +ES+++ + E++ + L+ G+ L+LDDFGT S Sbjct: 653 DFVAQVRAAVQRNAIDPNLFKLELTESLLLDDTEKTVATMNALKATGVQLSLDDFGTGYS 712 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L YL +P + +K + S + AI+++II MA + +IA+ + E ++ Sbjct: 713 SLQYLKILPLNQIKIDRSFVRDIATDPNDAAIVQTIIAMAGTLGLDVIAEGVETEAQLEF 772 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953 L GC Q P+ L Sbjct: 773 LDLRGCHACQGYLFGKPVSIREFESSL 799 Score = 74.6 bits (182), Expect = 8e-11, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 8/125 (6%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + ER + SGD W D+ + A + G ++ + + L +D + Sbjct: 3 ESERYKRLIEDSGDGYWVVDLKGRLLEVNQVYARMAGYSADELVNRHVSELDA--QDDEE 60 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + ++ + R E R R + + I + SN R++ DI+E+ Sbjct: 61 AVKARMERLLAQGHDRF--ESRHRHKKGHLFEVDVAINFIHESN----RFLVSFRDISER 114 Query: 523 KKSLE 527 + Sbjct: 115 NMYEQ 119 Score = 74.2 bits (181), Expect = 1e-10, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 55/151 (36%), Gaps = 3/151 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + Q + E+ +GD+ + D+ + + T+ G Sbjct: 105 LVSFRDISERNMYEQALRESEEKYRRLFENAGDLAYGTDLNGAFTAVSESLLTVTGYGRN 164 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + + + + R + + + + +YE + + D + + + + ++ Sbjct: 165 ELINAPIS--KILTPENLELARRMTAAKLAAEKQVTRYELEITSKDGRQIPLEL-VTTLT 221 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534 NG + GI DI+E+K+ + A Sbjct: 222 YRNGVPVGVQGIGRDISERKRFETDLRIAAT 252 >gi|71909200|ref|YP_286787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71848821|gb|AAZ48317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 827 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 160/566 (28%), Positives = 265/566 (46%), Gaps = 14/566 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + ER+ LA + + D ++ P + G + G L Sbjct: 264 ERRASAEREQLAQKVYSHTPAGIIFTDDQHRILSINPATTEMTGYEPFELIGQTVFGLIS 323 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIG 514 + D + + R G E V + RI + + G Y+ Sbjct: 324 L---DEGISQKDFQEQISMR-GSWSSELEVTQKNGSNFPAGARINRVDDPQSGLPAHYVW 379 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DITE+K++ + + A D LTG+PNR + L RL +L + VM ID+D Sbjct: 380 ILADITERKQAEDRMRHIAQHDALTGLPNRLALLMRLAQLLPEARRH-GWTVAVMFIDLD 438 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG VGD++L + R+ LL+ D +ARL G+ F IIL S ++ A + Sbjct: 439 RFKIINDTLGHQVGDEMLREVACRLSNLLRETDFVARLGGDEFVIILPSISSPADAAIVS 498 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + +++ I E+ + SIG + + +LKNA+ AMYHAK G N+ + Sbjct: 499 GKIISALSTAIEAEGHELHTSPSIGISIFPDDGPDGDIVLKNADTAMYHAKAAGRNNYQF 558 Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ ++R+ I+ L A+ +EL LV+ P R D G+EAL++W HP G I Sbjct: 559 FAADMNRTAAERLNIERKLRHAIARNELSLVFQPQFRAEDTTPTGVEALLRWHHPTDGMI 618 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S + F+ +AEE MI I ++L ++ W + P+ I +N++++ L + CE Sbjct: 619 SPARFIPVAEETGMIVEIGDWVLATACHEMARWINAGLK-PLRIAVNVSARQLRRRDFCE 677 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ + ++L +ES VM NP+ + +L RL ++G++L +DDFGT S L+Y Sbjct: 678 TVANALTTSGLPAELLELEITESSVMENPQEAIHILERLGRMGVTLAIDDFGTGYSSLAY 737 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + S + AI I +A ++ +IA+ + E + L Sbjct: 738 LKLFPIDHLKIDRSFVADIEHDLNDRAIAFGTIALAHSLGLNVIAEGVETEDQHELLRAN 797 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GCD +Q + PL + L R Sbjct: 798 GCDEVQGFLFSKPLTGAAAFAFLHAR 823 Score = 41.9 bits (97), Expect = 0.61, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 47/176 (26%), Gaps = 21/176 (11%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + + L L+ + +T I A + + + + V +D Sbjct: 111 THLVQGEPLFIDQQLVGFITTYTDITDRKA---AETALRTQHNQLQTVIESIPSAVSLFD 167 Query: 423 IVRDRVTTTPDIATILGLASG--------SMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 + V +L + + D + L Sbjct: 168 SAGNLVLFNTAFPRLLDVPAELAKPGVSMETLFRFNAMRGEYGPGDPEKIVATLMERAKN 227 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 F + + + +R P+ + G ++ + DI+E++ S E Sbjct: 228 PSHHY---FERTRPNGKT--LEVRGVPL--AEG---GFVTVYTDISERRASAEREQ 273 >gi|32492876|gb|AAP85527.1| MorA [Pseudomonas putida] Length = 1282 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 150/563 (26%), Positives = 266/563 (47%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G + G + + N L Sbjct: 714 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYSVGEVLDQLPNMLTVD 773 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D + R +L + + E ++ + + + + I + + GD+ Y+ Sbjct: 774 EQQD-AHLRYVLKQLHEHST--WEGEVWMKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 830 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL T L + + +M +D+D + Sbjct: 831 SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQAAERQKSW-VVLMFLDLDHF 889 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L +N + Sbjct: 890 KPINDSLGHAAGDRMLKDMATRLLACVDDDDTVARMGGDEFTLLLQHRSNRELACNRAIH 949 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 950 VAEQILASLVRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1009 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP+ G Sbjct: 1010 QFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1069 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + +++ R + +W Q P + +NI+++ D +L Sbjct: 1070 LVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQQRVRVP-KVSVNISARQFSDGQL 1128 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ +T P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1129 GTRIATILRETGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFGTGYSSL 1188 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + + L Sbjct: 1189 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1248 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ Sbjct: 1249 EHGCDEVQGYLFGRPMPAGRFEA 1271 Score = 71.1 bits (173), Expect = 9e-10, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 13/163 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + S+ + +R + D+++ D +P + +LG + Sbjct: 565 IGVAKDITEQIEASESLRDSEQRYRMLAESISDVIFSTDSKLSLNYVSPSVQAVLGYNAE 624 Query: 444 SMHGP-------IRNWLPYIHINDRDNFRTILD-----SFVGYRRGRLQYEFRVRAADNQ 491 + L IH+ D LD + + + + F AD + Sbjct: 625 WIFQNGWQSIIANPGQLNGIHVL-MDRVSKALDKPEQLALLRSQVQTQLFLFDCLRADGR 683 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + +R+ + + +G +G+ DI++Q+++ + + A Sbjct: 684 KIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLRMAAT 726 Score = 61.9 bits (149), Expect = 6e-07, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 6/152 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 I + + + S V D ++ D++ R + + + LG Sbjct: 432 ILSINDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNR 491 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI--LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 +H + +H D D + L LQ + R R D ++ IR Sbjct: 492 TELHQMGEYFWEILLHPEDADYYHRSRQLQRH-AGYSQLLQCQLRFRHRDGKWRRFDIRE 550 Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + + + + + R IG+A DITEQ ++ E + Sbjct: 551 QALARDKHDQVTRIIGVAKDITEQIEASESLR 582 >gi|291613927|ref|YP_003524084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291584039|gb|ADE11697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 727 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 145/569 (25%), Positives = 269/569 (47%), Gaps = 16/569 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455 ++G+ + S V D + V P I G S + G + L Sbjct: 164 TRGLIDQRDLLETVFESSYSGVMITDAKGNIVEVNPAFTRITGYQSEEVQGRNPHLLASG 223 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D +R + D + G + E R + + + + I P+ + +G++L Y+GI Sbjct: 224 RH--DHTFYREMWDDILAN--GHWEGEIWDRRKNGEVYPSWMNINPVRDISGNLLYYVGI 279 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D+T++K++ I AF D LT +PNR+ +RL + A + V+ +D+D Sbjct: 280 FSDVTKRKEAEAQIHQLAFYDPLTELPNRRLLNERLQQAFSVGARSGH-HGAVLFLDLDN 338 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKI 630 +K +ND G +GD +L+ + +R+ ++ D +ARL G+ F ++L S ++ + + Sbjct: 339 FKTLNDTKGHDIGDQLLIEVAKRLNSCVRNGDTVARLGGDEFVVVLESLSSVPDEAATQA 398 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A +R +++ P L T SIG + + + E+LK A+ AMY AK G N Sbjct: 399 DLVAEKIRYALSQPYQLANHVHRTTPSIGVVMFRGHQQSLEEVLKFADTAMYQAKTAGRN 458 Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + R ++E+L VE ++L L Y + +G E L++W HP+ Sbjct: 459 AIRFYDPVMQASIEARAELEEELRQVVERNQLRLYYQVQMD-SSNRPLGAEVLLRWQHPE 517 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S ++F+ +AEE I I L++L+ + W+ + + +N+++K Sbjct: 518 RGLVSPAQFIPMAEETGHIVPIGLWVLQTACTQLKVWQSDPLTCDLTLAVNVSAKQFRSM 577 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + +Q ++++ PS +KL +ES+V+ N E + + L+ +G+S ++DDFGT S Sbjct: 578 DFVSQVQRTLAQSGAKPSLLKLELTESLVLENVEDTIAKMRELKLLGVSFSMDDFGTGYS 637 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L YL +P D +K + S + AI+++II M++ + +IA+ + E + Sbjct: 638 SLQYLKRLPLDQIKIDQSFVRDIASDSNDAAIVQTIIAMSEVLGLNVIAEGVETEAQREF 697 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GC Q P +L++ Sbjct: 698 LDLRGCHAFQGYLFGRPAPLAEFEAILRK 726 >gi|300868717|ref|ZP_07113328.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] gi|300333278|emb|CBN58520.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] Length = 1089 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 149/619 (24%), Positives = 266/619 (42%), Gaps = 59/619 (9%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + +R + + DI + +P + ILG G Sbjct: 465 RKQAEEALRQREQRFRSLIENATDITVILNASGKYDYISPSVKRILGYTPQIAIGRNA-- 522 Query: 453 LPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L H +D+ L + + E+RVR + + + + + Sbjct: 523 LSLAHPDDKAAIAQTLSKAIQNPGISQSPIEYRVRHRTGSWCVLEAVATNLL-HDPAVNG 581 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + +DIT +K + + +L +AF D LTG+ NR F +RL ++ + V+ + Sbjct: 582 IVINCHDITARKLAEQQLLHDAFHDGLTGLANRALFSERLDHAFAIAKRRKDYLFAVLFL 641 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND LG A+GD +L+++ RR+ + L D +ARL G+ F I+L ++ Sbjct: 642 DLDRFKVVNDSLGHAIGDRLLIAIARRLEKSLHPGDTVARLGGDEFVILLEDIDSLSSAT 701 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + A + + + P L E+ +T SIG A + ++ +L++A+ AMY AK +G Sbjct: 702 NLANLLHQELTSPFTLDGHEVFITVSIGIALSSPECEDAANLLRDADTAMYRAKEQGRAR 761 Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENS------------------------------- 718 E F S + I+ DL A+E Sbjct: 762 HEIFNTSMHAHALRLLQIENDLRKAIEAIKKEQYINSTAPKLQNSAATESNEQNIILSQL 821 Query: 719 ------------ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 + + Y PI+ L+ +I G EAL++ HP+ G +S +EF+ +AEE + Sbjct: 822 PITNHHQPITIPQFLIHYQPIVSLLTGKITGFEALVRLQHPERGLVSPAEFIPVAEETGL 881 Query: 767 IKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 I I ++L R I W+ Q + + +N++ K +L + ++ +T Sbjct: 882 IIPIGQWVLRESCRQIRQWQQQFPHRLSLTVSVNLSVKQFSQPDLIAQIDRILRETDLDG 941 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 +KL +ESV+M N + LL L+ I L +DDFGT S LSYL P DT+K + Sbjct: 942 RSLKLEITESVLMENSKSVTALLKELKARNIHLCIDDFGTGYSSLSYLHRFPTDTLKIDR 1001 Query: 886 SLM------TGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 S + + + I+RSI+ +A N+ ++A+ + + L + CD Q Sbjct: 1002 SFVSRMGVESNINQGSIDPTEIVRSIVTLAHNLGMEVVAEGVEKASQLALLRALKCDGGQ 1061 Query: 937 DSHVASPLGFNSILKLLKE 955 + P+ + L+ + Sbjct: 1062 GYFFSRPVDSWAAAALIAK 1080 Score = 71.1 bits (173), Expect = 9e-10, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 6/138 (4%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIV----WDWDIVRDRVTTTPDIATILGLASG 443 + + + ++ + V D D + +P + I G++ Sbjct: 322 AELAERKRAEETVLLIQQQFAAIATNIPGSVYRIAIDPDGKMSLLYISPGVQEITGISPA 381 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + IH +D+ F T L + + + + E+RV + Q W+ Sbjct: 382 EAIARPESLIEIIHPDDKAMFDTSLQTSIETLQPCHR-EYRVISTSGQVKWVQDSGHFSK 440 Query: 504 NSNGDILRYIGIANDITE 521 +SNG+++ G+A DI++ Sbjct: 441 DSNGNVI-VDGVALDISD 457 >gi|312112082|ref|YP_003990398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] gi|311217183|gb|ADP75787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] Length = 953 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 157/630 (24%), Positives = 286/630 (45%), Gaps = 24/630 (3%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALV------GGLVLIVILIGFTVIQHVLATGY 395 P + + AL G V L +Q V+ + Sbjct: 327 PTFTPFSFAELVTKDRYAPMHPATFSMVALSEKNRHRAGSGASVSLPIPKSLQGVMTLAH 386 Query: 396 FSQGIFSDGERQSL-------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + ER + + DIV+ D+ + P +LG + Sbjct: 387 LLSATSREMERLHVCRQISQSLFEHNTDIVYSTDLHGNLTNVNPAFEKVLGYKREEVLHT 446 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L YIH ND + + E + + I+ P+ +G Sbjct: 447 NA--LKYIHPNDVRRVSMHFYRALRGKIQYYNLE--IPTKSGKPLLFQIKNVPIV-VDGK 501 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + GI DITEQKK+ E I A+ D T +PNR F++ +T L+ + N + V Sbjct: 502 KVGIYGIGRDITEQKKAEEKISYLAYYDPDTHLPNRTKFMEIITEQLEKAKR-KNRKLAV 560 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + ID+D++K+IND +G GD++L + +RI +L L R G++F ++L + +S Sbjct: 561 VFIDLDRFKRINDSIGHYAGDEILKQVVQRILHVLPIEAHLGRFHGDKFCLLLTGQIHSE 620 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 K+ + A + K + PI +E +TASIG + + S + + +LKNA++A+ AK G Sbjct: 621 KVFETATRIAKEMTKPIVYDGKEFFITASIGISFYPSDGVDAHSLLKNADIAVSRAKRSG 680 Query: 689 GNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 GN V+ + +++ R+ ++ L A+E EL+L Y PI+ + +IVG EALI+W H Sbjct: 681 GNRVQFYSAKMNDETLHRLEMERYLRKALEKRELFLCYQPIVDITTGKIVGNEALIRWRH 740 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 PK G + EF+ +AEE +I I ++LE + W+ + I +N+++ Sbjct: 741 PKLGLVRPDEFISLAEETGLIHEIGRWVLETACKQTKKWQA-LGNQQLSIFVNVSAAQFQ 799 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 ++ ++++ SP + L +E+ ++ N S ++ L++IG+ + +DDFG+ Sbjct: 800 HESFINDVKRALAQSQLSPDCLHLELTENSMLRNLHHSIQVMKELQRIGVGIAIDDFGSG 859 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 + SYL +P + +K + S + IAI++++I M + I+A+ + + + Sbjct: 860 YASFSYLKNLPANILKIDRSFIKQIHTNSSDIAIVKAMITMGHGLGMKIVAEGVETDEHL 919 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L + C Y+Q + P + + Sbjct: 920 QLLKMLRCHYVQGYALYRPTTAEELSAHIT 949 >gi|56750401|ref|YP_171102.1| hypothetical protein syc0392_d [Synechococcus elongatus PCC 6301] gi|56685360|dbj|BAD78582.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 1059 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 152/573 (26%), Positives = 278/573 (48%), Gaps = 8/573 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +I + + + ER L D+V + +P +LG +S Sbjct: 486 GLIIDISDRKKIEAELQTSEERYRLLAENMNDLVCLHQADGTYLYVSPSAEALLGFSSEE 545 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 M G + H D D R V L +R+R + W +P+ + Sbjct: 546 MVGQNPY--DFFHPEDCDRIRDEAHQAVL-MGAELPIVYRMRKKLGGYIWFETLTKPIMD 602 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G ++ + D+T++ + + +A D+LTG+ NR ++RL L S N Sbjct: 603 DQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERLELSLKRSKRLQNY 662 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D++K IND LG GD +LVS+ +++ +++ D+ ARL G+ F +++ Sbjct: 663 KYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAARLGGDEFVVLVEDI 722 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A + +I +P+ L ER I + SIG + +++++L++A+ AMY A Sbjct: 723 QTFDEPIKVAERILAAIQVPLELEERSIYTSTSIGIVFGSHEYESATQLLRDADTAMYRA 782 Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG E F + S R+ ++ DL A+ E L Y PII+L +I G EALI Sbjct: 783 KSRGRARYEVFDSAMHSQALARLHLENDLRQAIARQEFVLYYQPIIQLQTGKITGFEALI 842 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIA 801 +W HP G + + IAEE +I +I+ ++L + R + W+ + + + +N++ Sbjct: 843 RWQHPTEGIKLPIDLIPIAEETGLITSIDYWVLNQACRQLSEWQASYSQAADLSMSVNLS 902 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 +++L + L + +Q+++ T P + L +ES+++ N +++ LL + + GI +++D Sbjct: 903 AQNLQHDHLMDEIQSVLQATKIKPGSLTLEITESMLIENTDQTIQLLAAINEQGIEISID 962 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL +P + +K +GS + T + I+ +II + + IA+ I Sbjct: 963 DFGTGYSSLSYLHKLPVNNLKVDGSFVRKITTESTNYQIVNTIIALNNQLGLKAIAEGIE 1022 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + L+++G Y Q A PL + +L Sbjct: 1023 THEQLDLLSQLGYQYGQGYLFARPLNAKDVEQL 1055 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 6/149 (4%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGLA 441 + Q + + R I++ + D + + G+ Sbjct: 356 IQQELSDRSKAELALQESQTRFQRIADNLPGIIYGYKLRQDGTDQFTYISSGFREVYGID 415 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + IH D + +T + + E+R+ + + WM R RP Sbjct: 416 PETALENSNVVWGMIHPEDIEYLKTSIIKS-QQTLKTWKVEYRIITKNGELKWMQGRARP 474 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 NG+ + G+ DI+++KK + Sbjct: 475 TRQENGE-TFWDGLIIDISDRKKIEAELQ 502 Score = 56.9 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 3/160 (1%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 +L + + F + R V D++ V + Sbjct: 42 ALLAESDLVTEESEQASTGRLAIDQYFRESLRYQQVVEAQTDLILRSRSDTTVVFANKPL 101 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG G + G W + ND + + + R AD + W Sbjct: 102 CQVLGWQDGDISGQ--TWGNLVPPNDLSELHEKIAG-LSLENPTFESLNRNYGADQRIKW 158 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + + N G+++ + D+T + + + Sbjct: 159 IQWVNQGIFNDRGELIEIQSVGRDVTTLIEQITREKTLNY 198 >gi|189424128|ref|YP_001951305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189420387|gb|ACD94785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 1027 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 154/578 (26%), Positives = 270/578 (46%), Gaps = 16/578 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 I + A S S+ + L + S V D + G + Sbjct: 453 RIGAIEAIRDISDRKQSELFLKKLTHGIENSASAVVITDTQGVIEYVNKKFIQLTGFSLE 512 Query: 444 SMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G L F + + + R + E R + + +W I I P Sbjct: 513 EAVGKNPRILKSEATPPE---VFVDLWKTILSGR--EWRGELLNRRKNGEVYWSITSISP 567 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + N +G+I +I DI E+K + I A+ D LT +PNR+ DRL L S Sbjct: 568 LRNDSGEITHFIANVEDINERKNAEATIEHLAYFDPLTDLPNRRMLQDRLELALRRSRRH 627 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + +M +D+D +K +ND +G GD +L + R +++ D++ RL G+ F +IL Sbjct: 628 GS-NVALMYLDLDSFKHVNDSMGHPAGDLLLKEMAGRFSGVVRDDDVVCRLGGDEFALIL 686 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + +++A P+ L RE+ VTASIG A + + K+A++A+ Sbjct: 687 HDIHQDQDVVPIAQKLIEAVAQPVPLDGREVVVTASIGIALFPRDGGDVKNLEKHADIAL 746 Query: 682 YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 YHAK G N + + R+ +++ L A E EL L Y P + + ++ G+E Sbjct: 747 YHAKEEGKNTFRFYLEELNSTISTRIALEQGLRYAKERQELELHYQPKVCVASGKVSGVE 806 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W P +G +S F+ +AE+ +I I ++L + WR+Q + + + +N Sbjct: 807 ALLRWHSPDFGLVSPIRFIPLAEQTRLIIPIGEWVLRTACLQQVQWREQGLL--LNMAVN 864 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++ L L E + A+I +T P ++L +ES ++ NP+ LL RLR +G S++ Sbjct: 865 LSAIQLKSPGLVERVAAIIDETGIQPEHLELELTESALVNNPDEVVQLLERLRTLGCSIS 924 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P +K + S + AI RS++ +A N++ +A+ Sbjct: 925 IDDFGTGYSSLSYLKSFPVTILKIDRSFVRDLAHNSGDRAIARSVVDLANNLDMKTVAEG 984 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + E + L ++GC YIQ + P+ + + +++ Sbjct: 985 VESEEQLTILQQIGCTYIQGFIYSRPVQADQVSAVVRR 1022 Score = 59.2 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 14/193 (7%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDGERQSLAVLG 413 A + + + + I LIGF Q + Q + ++ + + Sbjct: 286 HAGWHKHAVNQAITFSIIVALSISALIGFQGYQREQLAKARAVEQALLDARQQLNDIIDF 345 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFV 472 D V+ D + I + G+ M G + + R +LD Sbjct: 346 FPDAVFVIDRNKRVTIWNRAIEKMSGVPKEEMLGKGDHEYSIPFYGQRRTQLLDLLDLDD 405 Query: 473 GYRRGRLQYEFRV-----------RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + RV D + ++ P+ N+ G+ + I DI++ Sbjct: 406 AELAAKYSNIRRVGEVLDAETFCPALHDGKGAYVWATGVPLYNAAGERIGAIEAIRDISD 465 Query: 522 QKKSLEGILCNAF 534 +K+S + Sbjct: 466 RKQSELFLKKLTH 478 >gi|118579162|ref|YP_900412.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118501872|gb|ABK98354.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] Length = 1238 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 156/567 (27%), Positives = 261/567 (46%), Gaps = 12/567 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLP 454 + + E + + + D + V+ G + + G Sbjct: 671 ARRRAEATLELWGRVFECTSESIMITDAAQRIVSVNQAFCATTGYRAEEIIGQSSLALRS 730 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H D FR + +RG Q EF R + + + + + + G + YI Sbjct: 731 DVH--DGIYFRQLWRGIR--KRGSWQGEFWCRHKNGEVSPQWMVVNTVHDRQGTVTNYIA 786 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI+ QK + I A D LT +PNR ++RL L + + V+ ID+D Sbjct: 787 LFTDISAQKSQEQRIQHIAHHDALTNLPNRLLCMERLILALQQAHRNGR-HVAVIFIDLD 845 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K IND LG VGD VLV+ R+ ++ D ++RL G+ F IIL +S +I + Sbjct: 846 HFKNINDSLGHHVGDCVLVTAANRLSMGVRDGDTVSRLGGDEFVIILADIEDSHQIEEIM 905 Query: 635 -IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + + P + E+ + SIG + + + +L+NA+ AMY AK G N+ Sbjct: 906 KHRLLPLMRQPYDAGGYELHCSCSIGISIFPEDGLDKDTLLRNADTAMYRAKEVGRNNYH 965 Query: 694 SFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + +S R+ I+ L +E +EL L Y P + L + GLEAL++W HP G Sbjct: 966 FYTEELNSRAMQRLSIETSLRKGIERNELLLHYQPKLDLHTGKPYGLEALLRWQHPDHGM 1025 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ IAEE +I I ++ R + W M I + +N+++ D Sbjct: 1026 ISPMEFIPIAEETGLIIPIGKQVIRNACRQLSRW-SSVGMSHICLSLNVSAVQFRDRRFV 1084 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + L+ + SP RI+L +E+++M + R+ ++ L+ G ++DDFGT S L+ Sbjct: 1085 EDLVQLVREEGVSPHRIELELTETMLMEDAVRTIRVMETLKDEGFLFSIDDFGTGYSSLN 1144 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P D +K + S + G +AI+++II + ++ +IA+ + E + + L Sbjct: 1145 YLHRFPIDCLKIDRSFIRGMLERPADLAIIKAIIGLGHTLDMQVIAEGVEKEDEYRALRA 1204 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 GCD IQ VA PL + + L R Sbjct: 1205 AGCDGIQGYFVARPLTPEQVPEWLLAR 1231 >gi|91203280|emb|CAJ72919.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 857 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 147/555 (26%), Positives = 264/555 (47%), Gaps = 11/555 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI--NDRDNF 464 SLAV S ++ D P + G + G N + I Sbjct: 302 LSLAVEQSPAMIAVTDTDGRIDYINPKFCKVTGFEPEEVLGK--NLIDIIQPGGESLSMA 359 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 L + + G + F R + W + + + ++ G I Y+ I DITE K+ Sbjct: 360 DKTLWKAITSK-GEWKEAFSSRKKHGELFWTSLSLSAIKSNEGFISHYLAIMEDITEHKQ 418 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + E I A+ D+LT +PNR+ F DRL + + + V IDID++KK+ND LG Sbjct: 419 AEERIHYLAYYDSLTALPNRELFHDRLNMAIIHAHRKQQM-LAVAFIDIDRFKKVNDTLG 477 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 + GD +L + R+ ++ D ++R G+ F ++L + D + K + P Sbjct: 478 HSTGDRLLKIIADRLKSCIREEDTVSRQGGDEFVLLLTEISRMEDANDVTQRILKKLKEP 537 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 + + + ++ ++ASIG A + T+ +LKNA+ AMY +K G ++ + + Sbjct: 538 VIIDDHDLCISASIGIALYPGDGTTAEALLKNADSAMYISKESGRDNYHFYSSTVQEKAY 597 Query: 705 VMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + + L A+EN EL L Y P + + +VG+EAL++W HPK G IS +EF+ +AE Sbjct: 598 EQLLEEMYLRRALENRELVLYYQPQVNIATGRLVGMEALLRWKHPKKGLISPAEFIPLAE 657 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + I I+ ++L + ++W+ P + I +NI+ L + + ++ T Sbjct: 658 DTGQIVPIDFWVLHTACKQNMAWQRAGL-PSVPIAVNISGHTFGRENLIDFVNNVLHDTR 716 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 SP + L +E + + N + + L +L+ +GI +T+DDFGT S LSYL P +K Sbjct: 717 MSPDALDLEITEGIAIQNLQTTIYKLNKLKSLGIQITIDDFGTGFSSLSYLSKFPIQKLK 776 Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + AI++++I MAK+++ T+IA+ + + + L + CD Q Sbjct: 777 IGMTFIHNLHKDPTNSAIVKAVIAMAKSLQLTVIAEGVETDEQFEFLQGLQCDEFQGYLC 836 Query: 941 ASPLGFNSILKLLKE 955 + + + + L + Sbjct: 837 SKAVTSEEMGRFLAK 851 Score = 68.1 bits (165), Expect = 7e-09, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 51/192 (26%), Gaps = 45/192 (23%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ + + +R V DI++ D + + G Sbjct: 117 ARTMRYSMERKQIELELQDGKQRYKRLVEILPDIIYRIDANGYFTFINEAV-QVFGYEPD 175 Query: 444 SMHGPIRNWLPYIHINDRDNF-------------------RTILDSFVGYRRGRLQYEFR 484 + G ++ IH +D + D +R + R Sbjct: 176 ELIGK--HFSELIHPDDLKKVSRSEVLSEYSGKTSDYKTTPKLFDERRTGQRKTTGLQIR 233 Query: 485 VRAADNQFHWMIIRIRPMSNS----------------------NGDILRYIGIANDITEQ 522 V++ +M I+ + + + +G+ DIT Sbjct: 234 VKSKK-SPEYMEYTIQIIKWPKKHEKIIEVAATGHYDSDIMKNDKRFVGTVGVIRDITGS 292 Query: 523 KKSLEGILCNAF 534 K + E I + Sbjct: 293 KHAEEMICTLSL 304 >gi|218886625|ref|YP_002435946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757579|gb|ACL08478.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 896 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 141/627 (22%), Positives = 257/627 (40%), Gaps = 16/627 (2%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 G P + ++ L L L + V+ H ++ Sbjct: 268 GANPGSGFCPTGGFCMEGICTAAH---GPHEAEVSVEPLPLSL-LRGKGMTALVVVHDIS 323 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 ++ ER + + + D V P TI G + G Sbjct: 324 GRRTAERQARLFER---VFRNALEGICITDPEGIIVAVNPAFTTITGYPADDAVGQSPRL 380 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 L H +D + + + V GR + E R + + + + I + G Y Sbjct: 381 LKS-HHHDSAFYEDMWRALVEE--GRWEDEIWNRRRNGEVYPEWLSISAIPGPTGRTEYY 437 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + +DITE K I A D LTG+PNR DRL ++ + +D + V+ +D Sbjct: 438 VAVFHDITELKAKESQIQHQAHHDALTGLPNRALLRDRLGMAINGARREDR-KVAVLSVD 496 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K++ND LG VGD L ++ ++++ D LAR+ G+ F ++L A Sbjct: 497 LDNFKQVNDSLGHMVGDIYLQQAAEQMRQMVRPQDTLARVGGDEFVVVLQDVEGERDAAQ 556 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + P+ + E E+ V AS+G A + +++NA++AM AK +G Sbjct: 557 VAERLLARFTDPVRVQEHELFVGASVGIALFPDDGDDPDTLVRNADIAMSRAKEQGKRRY 616 Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F ++ R+ ++ DL A+ ++ Y P + L I G+EAL +W Sbjct: 617 HLFTPAMNDRAVRRLSLEGDLHRALAAGDITAHYQPRVDLNTGLITGMEALARWIRADGS 676 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 +EF+ +AE +I + ML + D + + +N++ L Sbjct: 677 QEHPAEFIPLAESTGLIVPLGEHMLRLACAKTRALCDA-GHADLHVAVNLSVHQFRHRNL 735 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++++T P ++L +ES ++ + + + L +L ++GI+L++DDFGT S L Sbjct: 736 VGMVADVLAETGLPPHLLELEITESTIVTDVDHTIRKLNQLAEMGIALSVDDFGTGYSSL 795 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 L +P ++K + S + AI +II MA + ++A+ + + L Sbjct: 796 YQLKNLPLTSLKIDRSFIRDIPDDPNDAAIAATIITMADRLGLRVVAEGVETPEQLNFLL 855 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955 GC +Q + PL + LL Sbjct: 856 LEGCHEVQGFLFSRPLPPDEFTALLAR 882 >gi|291614988|ref|YP_003525145.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291585100|gb|ADE12758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 935 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 152/669 (22%), Positives = 277/669 (41%), Gaps = 16/669 (2%) Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350 A L A R + + + + G LL + Sbjct: 278 LGWASLVRQDVSQAFAPAHQLRQRILMMGVALGLLFAWLGW-------LLAEHIARPIVR 330 Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 + + G V + ++ ++ + + Sbjct: 331 ISRAANKVATGDLAYDVPEQQGGDEVAQLSRAIHAMVSNLTREIRQRRKAEESMRLSAAV 390 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + + + D + V I G + G L ++ +R + Sbjct: 391 FANNTEAIMITDADHNIVMINRAFTEINGYTEAEVLGKNPRLLAS-GKQGKEFYRDFYAA 449 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + + + E + + + + + + + I YI I DITE+KK E I Sbjct: 450 L--HNKDAWRGEIWNKRKNGEIFPEWVTVSVIRDQQAAITHYIAIYMDITERKKEEERIQ 507 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D LTG+PNR DRL L L+ + VM ID+D +K IND LG VGD Sbjct: 508 YLANYDVLTGLPNRYLLNDRLEQGLSLAQRHQ-TKVAVMFIDLDHFKNINDSLGHDVGDA 566 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L +++R+ L+ D +AR G+ F +L N+ ++ M S+ + E Sbjct: 567 LLKMVSQRLKGCLRRSDTIARQGGDEFVALLGDLNSEDEVTFVCEKMLHSLREEFEVAEY 626 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIK 708 ++V SIG + + TS ++L+NA+LAMY AK G N E ++ R+ ++ Sbjct: 627 HLSVGTSIGVSIYPDDGETSVQLLRNADLAMYRAKDAGRNRFEYYKPEMNTKALQRLHLE 686 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 L A+ ++L + P + + +VGLEAL++W HP+ G +S +EF+ +AEE +I Sbjct: 687 NALRSAIAENQLMVYCQPKVNVNSGAVVGLEALLRWKHPQLGFVSPAEFIPVAEESGLIN 746 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++L + A W+ + I +N++++ +L E +Q ++ T P I Sbjct: 747 EIGDWVLRQTALQQRLWQSHGYAI-VPIAVNLSARQCGQKDLVEKIQTIVRDTGLPPQFI 805 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 + +ES++M L+ +L G SL LDDFGT S LS L +P T+K + S + Sbjct: 806 EFELTESMLMDMGVNCLELMNKLSSAGFSLALDDFGTGYSSLSRLKLLPVKTLKIDQSFV 865 Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 E I+ + +A +E ++A+ + + ++ + + C+ Q + P+ Sbjct: 866 RDIATDENDEIIVNATAVLAHAMEMKVVAEGVETQQQLEFIRDLQCEEYQGYLFSRPVPP 925 Query: 947 NSILKLLKE 955 + + L++ Sbjct: 926 DEAEQFLRQ 934 >gi|119946934|ref|YP_944614.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] gi|119865538|gb|ABM05015.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] Length = 711 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 161/638 (25%), Positives = 287/638 (44%), Gaps = 34/638 (5%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIV--------ILIGFTVIQHVLATGYFSQGI 400 + + T + D D ++ A G V + + + + Sbjct: 72 CGKLVPILMATGQDDLDSVRQAYEAGATDFVTKPFNWKILAHRLRYMVRASDITEQLEEL 131 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 R A + W+WD+ + + + + +L L G R ++ + + Sbjct: 132 QKSESRLGNAQRIARLGNWEWDLKSNEIYWSEQLYHMLWLRRGVAKPSFRGFISRLPHGE 191 Query: 461 RDNFRTILDSFV----GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R +F + +RG + + AD + + + NG G Sbjct: 192 RKDFMGWIQGLRHGAKEEQRGGWNHS--LNQADGSRLNVQHQAEVFYDENGAAKVVSGTV 249 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D+TE ++ + IL A D+LTG+ NR +F R+ ++ + +L V+ +D+D + Sbjct: 250 VDVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHL-GAVLFLDLDNF 308 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA--------------RLSGNRFGIILI 622 K+IND LG ++GD +L + RR+ ++++ D + RL G+ F ++L Sbjct: 309 KRINDTLGHSIGDQLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGGDEFTVLLP 368 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 A + SI INL +I VT SIG A + +LKNA+ AMY Sbjct: 369 EIGKIKDAEHAARRVLNSIGDIINLSGHDIVVTPSIGIAIFPHHGENVDSLLKNADAAMY 428 Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 + K G N E F S + ++ + L A++N EL + Y P I + I+G EA Sbjct: 429 YVKRAGKNDYELFVNSMNVVAKRRLELESFLRHAIDNKELSVNYQPQIDIPTGRIIGAEA 488 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W+ + G +S EF+ IAEE +I I ++L R + WRD P I I +NI Sbjct: 489 LLRWNSAELGMVSPVEFIPIAEETGLISPIGEWVLREACRQVKEWRDDGL-PEIQIAVNI 547 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + L + + ++ +T ++L +E+++M + E + L +L+ +GI+L + Sbjct: 548 SVQQFAKQSLDKLVSKVLLETGLPVHCLELEITENMLMDDVEGAVETLHKLKDLGINLAI 607 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL P D +K + S +T + A+ ++II MA N+ T+IA+ + Sbjct: 608 DDFGTGYSSLSYLKRFPIDKLKIDRSFITYVTTEPSDAAVTQAIISMAHNLGLTVIAEGV 667 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ L + C+ +Q + + PL + + LL+ Sbjct: 668 EEASQLEFLRQHHCEEMQGYYFSRPLIASDMEALLRSH 705 >gi|289628325|ref|ZP_06461279.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650123|ref|ZP_06481466.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330869001|gb|EGH03710.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1250 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 148/563 (26%), Positives = 267/563 (47%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 682 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 740 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 ++ R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 741 ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 798 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 857 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 858 KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 917 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 918 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 977 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 978 QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1096 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1097 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ + Sbjct: 1217 EHGCDEVQGYLFGRPMPASQFEA 1239 Score = 76.5 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 592 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 593 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 650 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + NG+ G+ DI++Q+++ + + A Sbjct: 651 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 694 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 400 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 459 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + +H +D +++ + L LQ R R +N + +R + Sbjct: 460 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 519 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DITEQ + S + A Sbjct: 520 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 560 >gi|71907605|ref|YP_285192.1| PAS:GGDEF [Dechloromonas aromatica RCB] gi|71847226|gb|AAZ46722.1| PAS:GGDEF protein [Dechloromonas aromatica RCB] Length = 963 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 158/578 (27%), Positives = 282/578 (48%), Gaps = 12/578 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH 446 Q VL + + I R + + W D RV + ILG +++ Sbjct: 123 QQVLVSPERIEQIDQGVARFFQLASNTPECYWLTDAATQRVTYVSAGYEKILGRHVEALY 182 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 +WL Y+H D+D + ++ R G L +FRVR + W+ R P+ + Sbjct: 183 ADSHDWLNYVHPEDQDRVLAAVRTY---RLGGLDAKFRVRRPGDVQCWLHARNFPVRDEE 239 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G+I+ G+A DIT A D LT +PN+ F D++ ++ LS +L Sbjct: 240 GNIVSVGGVATDITSLLADQWKSPYFAHFDALTALPNQLMFYDQVKRMIALSKR-KDLPL 298 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++MV+DID+++++N LG A GD++L + R+ L+ DIL RL + FGI+L + Sbjct: 299 SLMVVDIDRFRQLNQTLGHASGDELLRQVAGRLSGSLRESDILGRLGTDVFGILLPDVAD 358 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + + A + ++ MP+ + +++ TA +G + E++ NA +A HAK+ Sbjct: 359 THQASIVARRIIDTMIMPVRVAGQDVFATAGVGIVFYPQDGNDVHELVTNAGIAGRHAKN 418 Query: 687 RGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + + DR+ ++ DL A +E L Y P D I G+EAL++W Sbjct: 419 LGRNSYQYYFPGMHEGARDRMFLEIDLRHATLRNEFVLYYQPKASCADGRITGVEALLRW 478 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G +S +F+ + EE +I + ++LE R + W+ P + +N++++ Sbjct: 479 QHPERGIVSPDQFIPLLEETGLIVQVGRWVLEEACRQAVEWQAAGLNIP-SVSVNLSARQ 537 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L L + A + KT + + + L +ES++M N + + L L+K+G++++LDDFG Sbjct: 538 LQAETLLTDVAATLEKTGLNAACLDLEITESMLMDNADMAIQTLSALKKMGVTISLDDFG 597 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL P D +K + S + +I R++I MA +++ ++A+ + Sbjct: 598 TGYSSLAYLKRFPLDAIKVDRSFVQDIAADSDDASITRAVITMAHHLKLKVVAEGVETPE 657 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL--KERFP 958 + L CD IQ + P+ + + +LL R P Sbjct: 658 QLALLISHQCDVIQGYFFSRPMPASGMTELLVSDRRLP 695 >gi|298504600|gb|ADI83323.1| sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAC domain-containing [Geobacter sulfurreducens KN400] Length = 792 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 160/604 (26%), Positives = 281/604 (46%), Gaps = 17/604 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 R + + V +V +++ + A Q + A+ S + + Sbjct: 163 RDGSRFVADLSVSRIVFEDHRAVIGIVRDITARKRDEQNLLV----FKRAIESSVNGITI 218 Query: 421 WDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRR 476 D + P + G A + G +L +DRD L + RR Sbjct: 219 TDATNGENLIIYVNPAFERMTGYAGHEVLGKNPRFLRG---DDRDQVELRKLAMALEERR 275 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + R D + + P+ + +G + YIGI NDI++Q++ E ++ A D Sbjct: 276 EGY-FVLRNYRKDGSQFMNELYVAPVRDRDGAVTNYIGIMNDISDQRRYEEQLVYQATHD 334 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LTG+PNR DRL L L + VM +D+D +KKIND LG VGD +L ++ Sbjct: 335 PLTGLPNRNLLQDRLGQALALESFRRRNPIGVMFLDLDNFKKINDTLGHTVGDMLLKAVA 394 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 R+ ++ D ++RL G+ + +IL + + A + + P L+ E+ +TA Sbjct: 395 NRLRNCVRGGDTVSRLGGDEYILILPNVKEMHDVTTVAKKLLGVFSTPFLLMGHELYITA 454 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714 SIG + S T +LKNA+ AMYHAK +G N+ + + +++ +R+ ++ L A Sbjct: 455 SIGITLFPSDGDTVDALLKNADAAMYHAKEQGKNNYQFYSEEMNTRVFERMALETSLHRA 514 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 + E L Y P + L I G+EAL++W+HP+ G + + F+ +AEE +I I ++ Sbjct: 515 IRQHEFLLCYQPRVDLRTGRISGVEALVRWNHPEMGLVPPARFIPLAEETGLIVPIGEWV 574 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 L +W+D PP+ + +N++++ L + + +++T P ++L +E Sbjct: 575 LRTACAQNKAWQDAGL-PPLRMAVNLSARQFRQENLIQMVADALAETGLDPRWLELELTE 633 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892 S++M E+S +L L +GI + +DDFGT S L YL P +K + S + Sbjct: 634 SLLMEQAEQSVSILRSLADMGIDIAVDDFGTGYSSLGYLKRFPITNLKIDQSFIRDIASD 693 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++R+II MA + + + + I L R GC+ +Q + + PL +L Sbjct: 694 PDDAILVRTIITMAHGLGMKTVGEGVESLEQIDFLYRHGCEEVQGYYFSRPLTAEGCEEL 753 Query: 953 LKER 956 L+E Sbjct: 754 LREE 757 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 7/202 (3%) Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 I + I + I L MA+ ++ + + + ++ Sbjct: 6 ISALHYRLPSPVRQFIV-LLSIIFLIEMLLMAVLPQVTGREV-EFKDALVDSMGLVTVAA 63 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + R+ + + D V + + P + G Sbjct: 64 PFLWAFIVRPLRRTAVAAVFREEVLLRQMVDGVITFGEDGTIRSLNPAAERMFGYRDDEA 123 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + + D FR + + G+ +L YE D + + + Sbjct: 124 AGMA---IDCLLSADGGYFRFAVQASGGHGTRQLAYELEGIRRDGSRFVADLSVSRIVFE 180 Query: 506 NGDILRYIGIANDITEQKKSLE 527 + IGI DIT +K+ + Sbjct: 181 DHRA--VIGIVRDITARKRDEQ 200 >gi|172036792|ref|YP_001803293.1| hypothetical protein cce_1877 [Cyanothece sp. ATCC 51142] gi|171698246|gb|ACB51227.1| hypothetical protein cce_1877 [Cyanothece sp. ATCC 51142] Length = 699 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 155/586 (26%), Positives = 276/586 (47%), Gaps = 16/586 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ L Q + + S + GD V DI P + G Sbjct: 114 TLEIALYKHEIKQQLIEQKQWLSTILNSVGDGVLTTDINHQITYLNPMAEQLTGWTLSEA 173 Query: 446 HGPI-RNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G I+ + + ++ + + L + D Q + P+ Sbjct: 174 IGKPVTEVFKLINETTHQSLPSPIEQVLENGQMLTLPSHTLLVKKDGQAIAIGDNAAPIY 233 Query: 504 NSN---------GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + DITE K + + + AF D+LT +PNR+ F +RL Sbjct: 234 EYKQTTSLSHNGDQCTGVVLVFRDITEYKLTTQKLHRQAFYDSLTNLPNRRWFQERLIDA 293 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 ++ + N V+ +D+D++K IND LG +GD +L ++RR+ LL+ D +AR G Sbjct: 294 IERVKRNSNYLFAVLFLDLDRFKVINDSLGHQMGDRLLNEVSRRLTHLLRSIDTVARFGG 353 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F I+L ++ A + S+ P + +E+ +SIG ++ ++ ++ Sbjct: 354 DEFAILLEDIHSRDDAIHVAQRINDSLNSPFIIDGKEVFTNSSIGIVLSSNGYLSMDNLI 413 Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A++AMY AK +G F + ++ DL A+E EL L Y PI L Sbjct: 414 RDADIAMYRAKAKGRACYAIFDPVVAQEIISASRLENDLKGAIEKEELTLYYQPIFDLET 473 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + I G+EAL++W HP+ G IS F+ IAEE I AI+ ++LE + W + Sbjct: 474 QMIQGVEALVRWQHPQNGLISPQFFIPIAEETGYILAIDNWVLETACHQMKQWLTLGSNC 533 Query: 793 PI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + INI+S L L + ++ ++S T +PS I L +E+ ++ +P+ + ++L +L Sbjct: 534 QFSKVSINISSYQCLQKNLTQKIRKILSTTGLNPSNITLEITETALIQDPDSAIVILNQL 593 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNI 909 + +GI L+LDDFGT S LSYL Y P DT+K + S ++ ++ + I+++II + +N+ Sbjct: 594 KDLGIILSLDDFGTGYSSLSYLHYFPVDTLKIDRSFISNLSKNKEGLEIVKTIINLGRNL 653 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+A+ I + +K L ++ C Y Q + PL + + +L+ Sbjct: 654 NMDIVAEGIETDEQLKLLKQLNCQYGQGYLFSKPLAVDDMNQLINS 699 >gi|237653347|ref|YP_002889661.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|237624594|gb|ACR01284.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 790 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 166/586 (28%), Positives = 272/586 (46%), Gaps = 13/586 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V L + ++ + + + + D + P + I Sbjct: 209 VSLTVSKAHADLQEHAAALGRAEAELRLYATVFTNASEGMLITDAHSRIIAANPAFSRIT 268 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + + G L D +R + + RG+ Q E R D + + Sbjct: 269 GYSPAEVAGRSPALLNS-GRQDAGFYRRMWSTLAS--RGKWQGELWNRRRDGSIYPEWLS 325 Query: 499 IRPMSNS----NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 I + +G YIGI +DITE+K++ IL A D LT +PNR DRL+ Sbjct: 326 ITAVPGEGEGADGQPCNYIGIFSDITERKEAEARILHLAHHDPLTNLPNRALLNDRLSQS 385 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L + D V+++D+D++K IND LG GD +L+ + R +L+ D LARLSG Sbjct: 386 LLQARRDGRG-AAVLLLDLDRFKTINDTLGHERGDSLLLEICARCRRVLRDTDTLARLSG 444 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F I+L + AD A + +IA+P L E EI++TASIG A + S +L Sbjct: 445 DEFVIVLPDATTADVSADTARRILDAIALPCRLGEHEISITASIGIALFPRDGGDESTLL 504 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 +NA+ AM+ AK G N E + S R++++ L A E EL L Y P + D Sbjct: 505 RNADAAMHRAKEAGRNGFEFYTEDMNTSSLGRLLLEHQLRGAAERGELLLHYQPKVSAAD 564 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + G EAL++W HP+ G ++ +F+ +AEE +I I ++LE R +W D Sbjct: 565 GRLGGFEALLRWQHPELGMVAPGQFIPLAEESGLIVPIGQWVLEETCRQQRAWLDAGFDV 624 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 P + +N+++ L ++ + A I +P I+L +E+++M + +R+ L RLR Sbjct: 625 P-PLAVNLSAHQLAQPDIVATVAAAIECHRLAPGLIELELTETMLMRDVDRTIRTLVRLR 683 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910 ++G+ L +DDFGT S L+YL P + +K + S ++ I +I+ MA ++ Sbjct: 684 EMGVRLAIDDFGTGYSSLNYLRQFPVNALKIDRSFVSDIGSDGAEGKIAAAIVGMAHSLG 743 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +A+ + E L GC +Q +A P I + L R Sbjct: 744 LDAVAEGVESEAQRAFLQMHGCHQLQGFLIARPAPAREIERFLSRR 789 >gi|323524751|ref|YP_004226904.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001] gi|323381753|gb|ADX53844.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1001] Length = 1036 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 147/556 (26%), Positives = 268/556 (48%), Gaps = 14/556 (2%) Query: 407 QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 QS A+ S + + + + P I G + G L +DRD Sbjct: 477 QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDPAEVMGHDCRVLQR---DDRDQ 533 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + R + R D W + I P+ N+ G I +IG+ ND+T+ Sbjct: 534 EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNAEGVITHHIGVINDVTDL 592 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + E + A D+LT +PNR DRL L ++ V+ +D+D +K +ND Sbjct: 593 MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKG-VAVVFMDLDGFKNVNDS 651 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +VGD +L + R+ + D +AR G+ F I++ + + + +R SI+ Sbjct: 652 LGHSVGDRLLGVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRVSIS 711 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P+ L E+ V S+G + + + ++K A+LAMY AK G N + ++ S Sbjct: 712 EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771 Query: 703 D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ +++ L A+ +++ L Y P + + +IVG EAL++W P+ G + S F+ + Sbjct: 772 AGARLALEQRLRRALRDNQFLLHYQPQVDIHTGQIVGTEALVRWSDPEAGLVPPSSFIPV 831 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I ++ ++L R +W++ +PP + +N++++ ++ + + ++ + Sbjct: 832 AEESGLIGPLSEWVLREACRQNKAWQN-LGLPPARVSVNLSARVFQQRDIAKLVMQVLDE 890 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P ++L +ES +M N E + +L L +GI L +DDFGT S LSYL P D Sbjct: 891 TGLEPQYLELELTESAIMRNAEEAVSMLNELSALGIGLAIDDFGTGYSSLSYLKRFPVDR 950 Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S ++ + I +II +A +++ +IA+ + + L CD +Q Sbjct: 951 LKIDRSFVSDIGISGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010 Query: 939 HVASPLGFNSILKLLK 954 + A PL +I +L+K Sbjct: 1011 YFAKPLSTEAISELMK 1026 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 16/167 (9%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 L + F + V + + ++ D+ + Sbjct: 322 LNFLGRAAFFVLADDVTEQINAEAEAQRSNQMLETVIDNIPQRIFWKDLESRYLGCNMAF 381 Query: 435 ATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 A GL+ + G P R + ++ +DR+ + R ++ +E V Sbjct: 382 ARDAGLSYPEQVVGKSDADMPWRAFAELLNAHDREVVQ--------TRVPKMNFEVDVVI 433 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + P ++S+G ++ +G DITE+K++ + + Sbjct: 434 G-GVHRTTVTSKLPFTDSDGRVIGVLGSYTDITERKRADLALRLQSR 479 >gi|237654605|ref|YP_002890919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|237625852|gb|ACR02542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 855 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 150/582 (25%), Positives = 282/582 (48%), Gaps = 13/582 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGER-QSLA---VLGSGDIVWDWDIVRDRVTTTPD 433 I+ + + + S +R LA + S + V D ++ P Sbjct: 273 ILSGMELAYVHELHDALRARDLALSASQRDLYLAEKVIESSLEGVMVTDAHARILSVNPA 332 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 + G A + G + L + + D + G+ Q E R + + Sbjct: 333 FTRMTGYAPEEVVGLNPSVLNS-GRQSPAFYARMWDGLL--GDGQWQGEVWNRRKTGEVY 389 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 ++ I + + G + Y + DI+ K++ I A+ D LTG+PNR+ DRL Sbjct: 390 PQLLHITAIRDREGVLTHYAALFTDISRLKETEARIRDLAYYDPLTGLPNRRLLDDRLQV 449 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L +A R VM +D+D++K+IND LG AVGD +LV + R+ L+ D +AR+ Sbjct: 450 ELAHAARL-RCRLAVMFVDLDRFKRINDSLGHAVGDKLLVEIAARLRASLRDDDTVARMG 508 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F ++L + + + A A M + P+N+ RE+ VT S+G A + + + Sbjct: 509 GDEFLVVLNNLSGPDEAATMARRMVAELRRPVNVEGRELVVTTSVGVAVYPDDSRDADTL 568 Query: 674 LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +K+A++AMY AK G N + F +++ +R+ ++ L A+ EL L + P+++ Sbjct: 569 VKHADVAMYRAKDEGRNSFQLFEPAMNARSLERLALETALHRALPRDELQLYFQPVMKAE 628 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 E+V +EAL++W HP G +S ++F+ +AE+ +I I ++L W + Sbjct: 629 GGELVAVEALLRWRHPDLGLVSPADFIPLAEDTGLIVPIGEWVLRSACEHHRRWCEAGGA 688 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 P+ +++NI+++ + + +++++T +P + L +ES++M + +R+ L L Sbjct: 689 -PLHMMVNISARQFREEGFAAMVGSVLAETGMTPGDLTLELTESMLMDDTDRALARLDHL 747 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNI 909 R +G+ L +DDFGT S L+YL P D +K + + G + A++ +I+ + ++ Sbjct: 748 RALGVCLAIDDFGTGYSSLAYLKRFPIDELKIDRLFVRGIDRNTRDAALVSAIVSLGHSL 807 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++A+ + + L R GCD Q H + PL + +K Sbjct: 808 GLRVVAEGVETAAHLDVLRRQGCDLAQGFHFSPPLPWEEFVK 849 >gi|118443039|ref|YP_878420.1| diguanylate cyclase/phosphodiesterase [Clostridium novyi NT] gi|118133495|gb|ABK60539.1| Diguanylate cyclase/phosphodiesterase domain 2 [Clostridium novyi NT] Length = 961 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 152/569 (26%), Positives = 273/569 (47%), Gaps = 7/569 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIR 450 A + + ++ L V GS D +W+WDI D++ + + I G + ++ R Sbjct: 390 ALEKSKETLEKGRQKYKLVVDGSNDAIWEWDIKEDKLFMSNKLNIIKGSSKYTDINENKR 449 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + I D + + E R+ N +W I+ + + + G++L Sbjct: 450 YFSKIIKEEDYKKIIEKFKEILYKNENYIDVECRILDEFNYENWFNIKGKALRDGEGNVL 509 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + G DIT++K++++ I A+ D+LTG+PNR ++ + I+ D+ + +M Sbjct: 510 KIAGSITDITDRKEAIKKIEYLAYNDSLTGLPNRVAYSRDIYGIIQNVKKDNKI-GAIMF 568 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +DID +K +ND LG G+++L + +RI +L + RL G+ F I+ N I Sbjct: 569 LDIDNFKNVNDTLGHDYGNELLKKVNKRISNILTEDERFYRLGGDEFIIVQCGSYNEKDI 628 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + K + + I T S+G + + S +LK A+ AMY AK+ G + Sbjct: 629 ELLADNILKLFSKSFIVKNEHIYTTVSLGISFFPKDSCDQSVLLKYADTAMYSAKNLGKS 688 Query: 691 HVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + ++E L A+E EL LV+ P + EI G+E L++W+ K Sbjct: 689 KYLIYNKEMSSNLIRRSQLEEGLRHAIERKELKLVFQPQVNANTGEIKGVEVLLRWNSEK 748 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 +G +S SEF++IAE+ +I +I ++L W+ + I I +N++ L + Sbjct: 749 FGFVSPSEFIVIAEKSGLINSIGEWVLRESCLKRKQWQIENLK-DITISVNVSVIQLQQD 807 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + E ++ ++ KT P ++L +ESV+M + E + +L +R IG+ + LDDFGT S Sbjct: 808 DFIEKLKEILEKTKLPPECLELEITESVMMESKETNLDILNSIRDIGVKIALDDFGTGYS 867 Query: 869 LLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL +P + +K + S + + I+ II +A I +IA+ + + Sbjct: 868 SLSYLKMLPINKIKLDKSFIDTIHINKNDKFIVEGIIDLAHKIGLNVIAEGVELNEQLDV 927 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD IQ + + P+ +LLK+ Sbjct: 928 LCEANCDEIQGYYFSKPVEEFEFKELLKK 956 >gi|117925517|ref|YP_866134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117609273|gb|ABK44728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 1275 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 157/581 (27%), Positives = 271/581 (46%), Gaps = 15/581 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +Q V +G+ + +G+ + D D P I+G Sbjct: 696 VGTLQDVTRRKMAEEGLVLA----KMIFDNAGEAIVITDAQGDITDVNPAYQRIMGYTRD 751 Query: 444 SMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L H D + + + + G Q E R + + I + Sbjct: 752 EIVGQNPSILKSGRH--DEQFYEQMWNEMLSE--GHWQGEIWDRRKSGEIFPKWLTIDAI 807 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G I ++G+ DIT+QK++ E + A+ D LT +PNR F DRL + LSA Sbjct: 808 RDEQGVISNFVGLFMDITQQKETEEQLEKLAYYDPLTELPNRALFRDRLEQEMRLSAR-G 866 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + ID+D++K +ND LG GDD+L+ + RI L+ D +ARL G+ F +IL Sbjct: 867 GKSLGLFFIDLDRFKYVNDSLGHDKGDDLLIQVAGRIKHHLRTSDTVARLGGDEFTVILP 926 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + +A A A+ KS+ L E+ + SIG A + K+A+ AMY Sbjct: 927 GIEQTNDVARIAGAIVKSLGEVFVLQGHEVFIGGSIGIAMHPDDGEDYETLTKHADTAMY 986 Query: 683 HAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G + F + + + L AVE ++L L Y P + + I G+EA Sbjct: 987 RAKEEGRGTYKFFTSDMNEINGRRLSLERALRQAVECNQLTLHYQPKVDVKQCRITGMEA 1046 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W+HP+ G +S +F+ IAEE +I I +++++ D + P+ + IN+ Sbjct: 1047 LVRWNHPEQGLVSPVDFIPIAEETGLIITIGEWVMQQACMDAKRLARSSRH-PLQVAINL 1105 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++K D L ++ + ++ +P +++ +ES+ MG+ R+ +G LR +G+ +++ Sbjct: 1106 SAKQFQDALLVAKLERSLQQSGLAPELLEVEITESLAMGDVNRTIEQIGELRALGVKVSI 1165 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P + +K + S + AI+ SI+ MA + +++A+ + Sbjct: 1166 DDFGTGYSSLSYLKKLPLNALKIDKSFIQDLYLDSDDTAIVSSILSMASALGLSVVAEGV 1225 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + I L C IQ + PL F + K L + P+ Sbjct: 1226 ENQAQIHFLCEKECPTIQGYFFSKPLPFEAFEKFLLDWDPV 1266 Score = 93.9 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 4/141 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 ++ + I D E + W WD+ +D + + ++ +LGL + H Sbjct: 573 KYRAQQLKQLEQIHQDLENAQSV---AKIGSWHWDMQKDNLHWSKELVRLLGLEGDTSHA 629 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR-AADNQFHWMIIRIRPMSNSN 506 +L IH +DR + + + R + + R+ + + +S Sbjct: 630 SYSTYLELIHPDDRAKINRQMAAVTRGMQDRFEADHRIICHKSGELLHIHALGIVSRDSR 689 Query: 507 GDILRYIGIANDITEQKKSLE 527 G + +G D+T +K + E Sbjct: 690 GVPSQMVGTLQDVTRRKMAEE 710 >gi|237748475|ref|ZP_04578955.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes OXCC13] gi|229379837|gb|EEO29928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes OXCC13] Length = 1021 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 152/580 (26%), Positives = 274/580 (47%), Gaps = 15/580 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILG 439 ++ ++ F+ F E+ LA S + + D + V I G Sbjct: 438 SQRLLLELMEDIDFALQHFEKEEQLQLAAQVFSQSSEAIMLLDSCSNIVMINRAFTHITG 497 Query: 440 LASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G R H DR+ + T+ +S + GR Q E R + + + Sbjct: 498 YSEEEALGKNPRMLASGQH--DREFYSTMWESI--EKEGRWQGEIWNRRKNGSIYPEWLL 553 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 ++ M +S ++ YIG D+TE+K++ E + A D LTG+PNR R + L+ Sbjct: 554 VQTMRDSQNEVTHYIGTFTDLTERKETEERVQWLAHFDPLTGLPNRTLLHIRSNLAISLA 613 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + +M +D+D +K +ND LG +GD++L R+ ++ D ++RL G+ F Sbjct: 614 HRR-HEPLALMFLDLDNFKNVNDSLGHGIGDELLKQFAERLKNAVRDQDTISRLGGDEFV 672 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L + ++ A + A P ++ E+ +TASIG A + + + +A+ Sbjct: 673 LVLPN-TDTGGATSIAEKLLAIAAEPYHIDPHELNLTASIGIAMFPADGADFETLSCSAD 731 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIV 736 AMY K G N+ F M++ D L A+E ++ L+Y PI+ L V Sbjct: 732 TAMYRTKQNGRNNYCFFTAEMQAKSSRMLELDSALRRALERNQFTLLYQPIMSLNYGVNV 791 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W+HP+ G+IS EF+ +AE I I ++L + + + W D N + + Sbjct: 792 GFEALLRWEHPQLGSISPEEFIPVAESNGQIIPIGEWILRSVVKQLKEWVDAGNDR-LMV 850 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++ D L E + ++ + P + L +ESV M PE + +++ L++ GI Sbjct: 851 SVNLSAVQFRDRRLTEQIAEILKENDLDPKHLVLELTESVAMEKPESAIVIIDSLKERGI 910 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914 +++DDFGT S L+YL ++K +GS + + +AI+ +I+ +AKN+ T I Sbjct: 911 KVSIDDFGTGYSSLAYLKRFAAHSLKIDGSFIQNVPHDPENMAIVGAIVSLAKNLGITTI 970 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + ++ L GC IQ + + P+ + L Sbjct: 971 AEGVENIKQLEFLKETGCTAIQGHYFSRPMTAAAASDFLA 1010 Score = 43.0 bits (100), Expect = 0.24, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 23/66 (34%) Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 +++ E + + + R ++ +G + DITE+K++ Sbjct: 18 INALKEGISDEFCEEKSLHRKNGDDAITEVHFRLVTKEDGTPDYLVVTVEDITERKRAEA 77 Query: 528 GILCNA 533 + + Sbjct: 78 EVFRLS 83 >gi|262089630|gb|ACY24727.1| PAS-PAS-GGDEF-EAL domain protein [uncultured organism] Length = 838 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 153/578 (26%), Positives = 275/578 (47%), Gaps = 29/578 (5%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTT-------TPDIATILGLASGSMHGPIRNWLPY 455 R + S D W+ + + + +LG + G + Sbjct: 272 SEARFRSLIELSSDWYWEQNADLQFIEFEDPNNKSSYKRDEVLGKHLRELPGTALLSESW 331 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 I +D V R E R A + + +++ + P + NG Y GI Sbjct: 332 IEYDD----------LVAERNPFRDLELRRVADNGKAYFISLTGLPAFDENGKFRGYRGI 381 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DIT++K+S + I A D+LT +PNR F L ++ + + V ID+D+ Sbjct: 382 GRDITDRKRSEQHIHFLATHDSLTSLPNRFMFSQILNLAIESAHRYHR-KLAVFFIDLDR 440 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG GD +L + R+ + L+ D++ RL G+ F I+L N+ +IA A Sbjct: 441 FKNINDTLGHEAGDFLLCEMAARLKQCLRASDVVGRLGGDEFVILLPEPENTEQIATVAQ 500 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + PI++ +E VTASIG + ++KNA++AMY AK G N+ + + Sbjct: 501 KILSASINPIDINGQECRVTASIGICVYPEDGKDEQTLMKNADIAMYRAKEEGKNNYQFY 560 Query: 696 RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 +R+M++ +L +A+E +E +L Y L EI G+EAL++W HP+ G IS Sbjct: 561 SPDIEARSLERLMLENNLRMALERNEFFLHYQAKRNLQTGEIAGVEALVRWQHPELGVIS 620 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 ++F+ +AEE +I I ++L+ ++W Q PP+ + +N++ + D L + Sbjct: 621 PAQFIPLAEETGLIVLIGRWVLKTACAQNVAWLKQGL-PPLCMAVNLSVRQFFDEHLIQD 679 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + +S++ P +++ +E +VM + ER+ +L ++ +G+ L +DDFG S L+ + Sbjct: 680 VADALSESGMQPELLEMEITEGMVMQDAERAIRILTAIKALGVRLAIDDFGVGYSSLAQI 739 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P DT+K + S + + AI +II M + + T+IA+ + + L Sbjct: 740 KRFPIDTLKVDSSFIRDIPQNREDRAITEAIIAMGRTLSLTVIAEGVETKEQETFLRDHN 799 Query: 932 CDYIQDSHVASPLGFNSILKLLKER------FPLVKNT 963 CD Q + + P+ + +K++ +P V +T Sbjct: 800 CDQSQGYYFSKPISPEDFVSFMKKQAACTIVYPPVAST 837 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 3/149 (2%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 + I + V + S + + V D ++ D+ + Sbjct: 114 FNARDLNIELEKRVAERTTELSAISATLEQERNLMRTLVDAVPDSIFVKDLNSKFLLANN 173 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-NQ 491 +A +G + ++ G + + NF + V + E + Sbjct: 174 AVARGMGTSPENLIGK--DDFDFFPEEMAQNFFDDEQAIVRTGEALVNREELAVNKETGN 231 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDIT 520 W + P+ N G+ + +GI DIT Sbjct: 232 MRWFLTTKLPVRNDKGETVALVGIGRDIT 260 Score = 49.2 bits (116), Expect = 0.004, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 6/120 (5%) Query: 416 DIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D+++ D + + + G ++ + G L + D V Sbjct: 3 DLIYAKDEKGRFIYVNLALVNMTGAESADDILGKTDFDLN---PPTAAQAYSDDDQLVMR 59 Query: 475 RRGRL--QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 L + E + W P+ + G ++ IGI DIT+ K++ Sbjct: 60 SGQPLVGREELLENFKTGESRWHSTTKVPLRDDKGKVIGIIGITRDITQIKQAEFNARDL 119 >gi|39995582|ref|NP_951533.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|39982345|gb|AAR33806.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] Length = 792 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 160/604 (26%), Positives = 281/604 (46%), Gaps = 17/604 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 R + + V +V +++ + A Q + A+ S + + Sbjct: 163 RDGSRFVADLSVSRIVFEDHRAVIGIVRDITARKRDEQNLLV----FKRAIESSVNGITI 218 Query: 421 WDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRR 476 D + P + G A + G +L +DRD L + RR Sbjct: 219 TDATNGENLIIYVNPAFERMTGYAGHEVLGKNPRFLRG---DDRDQVELRKLAMALEERR 275 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + R D + + P+ + +G + YIGI NDI++Q++ E ++ A D Sbjct: 276 EGY-FVLRNYRKDGSQFMNELYVAPVRDRDGAVTNYIGIMNDISDQRRYEEQLVYQATHD 334 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LTG+PNR DRL L L + VM +D+D +KKIND LG VGD +L ++ Sbjct: 335 PLTGLPNRNLLQDRLGQALALESFRRRNPIGVMFLDLDNFKKINDTLGHTVGDMLLKAVA 394 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 R+ ++ D ++RL G+ + +IL + + A + + P L+ E+ +TA Sbjct: 395 NRLRNCVRGGDTVSRLGGDEYILILPNVKEMHDVTTVAKKLLGVFSTPFLLMGHELYITA 454 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714 SIG + S T +LKNA+ AMYHAK +G N+ + + +++ +R+ ++ L A Sbjct: 455 SIGITLFPSDGDTVDALLKNADAAMYHAKEQGKNNYQFYSEEMNTRVFERMALETSLHRA 514 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 + E L Y P + L I G+EAL++W+HP+ G + + F+ +AEE +I I ++ Sbjct: 515 IRQHEFLLCYQPRVDLRTGRISGVEALVRWNHPEMGLVPPARFIPLAEETGLIVPIGEWV 574 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 L +W+D PP+ + +N++++ L + + +++T P ++L +E Sbjct: 575 LRTACAQNKAWQDAGL-PPLRMAVNLSARQFRQENLIQMVADALAETGLDPRWLELELTE 633 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892 S++M E+S +L L +GI + +DDFGT S L YL P +K + S + Sbjct: 634 SLLMERAEQSVSILRSLADMGIDIAVDDFGTGYSSLGYLKRFPITNLKIDQSFIRDIASD 693 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++R+II MA + + + + I L R GC+ +Q + + PL +L Sbjct: 694 PDDAILVRTIITMAHGLGMKTVGEGVESLEQIDFLYRHGCEEVQGYYFSRPLTAEGCEEL 753 Query: 953 LKER 956 L+E Sbjct: 754 LREE 757 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 7/202 (3%) Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 I + I + I L MA+ ++ + + + ++ Sbjct: 6 ISALHYRLPSPVRQFIV-LLSIIFLIEMLLMAVLPQVTGREV-EFKDALVDSMGLVTVAA 63 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + R+ + + D V + + P + G Sbjct: 64 PFLWAFIVRPLRRTAVAAVFREEVLLRQMVDGVITFGEDGTIRSLNPAAERMFGYRDDEA 123 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + + D FR + + G+ +L YE D + + + Sbjct: 124 AGMA---IDCLLSADGGYFRFAVQASGGHGTRQLAYELEGIRRDGSRFVADLSVSRIVFE 180 Query: 506 NGDILRYIGIANDITEQKKSLE 527 + IGI DIT +K+ + Sbjct: 181 DHRA--VIGIVRDITARKRDEQ 200 >gi|330505281|ref|YP_004382150.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328919567|gb|AEB60398.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 1244 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 153/559 (27%), Positives = 273/559 (48%), Gaps = 9/559 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + + ++ + + + V D+ + I G + G L Sbjct: 674 RQQMQEELQQAATVFESTAEGVLITDLEQRITAVNRAFTQITGYSEAEALGQRPTLLSS- 732 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D+ + + S G Q E R + + + + I + N + I ++G+ Sbjct: 733 GQHDKAFYAAMWHSLAAN--GHWQGEIWNRRKNGELYPEWLTISAVRNRDNQITHFVGVF 790 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F +RL LD + DD L V+ +D+D++ Sbjct: 791 ADISSLKHAQARLDHQAHHDPLTGLPNRLLFENRLRGALDGTRADDQL-GAVLFLDLDRF 849 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG VGD +L ++ R+ L+ D +ARL G+ F I+L + A Sbjct: 850 KQINDSLGHPVGDQLLKAIAERLRLQLRDIDTVARLGGDEFIILLPGLHQPQDAEQIAQK 909 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + L E ++ASIG + + + + ++KNA+ AMY +K +G N E + Sbjct: 910 LLECFGASFQLDNHEFFISASIGISLYPTDGQDVATLVKNADAAMYQSKAKGRNRCEFYT 969 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 S ++R+ ++++L A+E +EL L Y P L + +VG EAL++W HP +G+I Sbjct: 970 RSLTFQVNERMAMEQELRRALERNELCLYYQPKFCLRSQSLVGAEALVRWPHPLFGDIPP 1029 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AEE +I + ++LE+ R + W++ + +N+A L L + Sbjct: 1030 DRFIPVAEESGLILPLGDWVLEQACRQLQEWQESGRGFGA-LSVNLAGAQLHQPSLLPRI 1088 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 AL+ + +P ++L +E+ +M E + +L RL+++G+ L +DDFGT S LSYL Sbjct: 1089 GALLQRYNLAPELLQLEITENFIMNQAEEALDILHRLKQLGVQLAIDDFGTGYSSLSYLK 1148 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G +AI R+II + +++ T+IA+ + + L GC Sbjct: 1149 RLPLDVLKIDQSFVRGLPDDPHDLAITRAIIALGNSMQLTVIAEGVETKAQELCLAAEGC 1208 Query: 933 DYIQDSHVASPLGFNSILK 951 IQ V+ PL ++ + Sbjct: 1209 LQIQGYVVSRPLSADAFAR 1227 Score = 86.5 bits (213), Expect = 2e-14, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 11/168 (6%) Query: 369 PALVGGLVLIVILIGF--TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR- 425 PA++G L +I ++ + + + Q + S + V I W+ + Sbjct: 273 PAVLGLLAIIAAILSINRRLKREMRNREALEQELRSREQHFRDMVESLCAITWETESSGL 332 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG--RLQYEF 483 +P +LG W ++H +D L + E+ Sbjct: 333 TYTYVSPHAEKLLGYPLHEWL-EPGFWQRHLHPDDHQR---TLRDCLEQSSAGKDHALEY 388 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 R+ AAD + W+ + + + ++R G+ DI+E K++ + + Sbjct: 389 RLLAADGRIVWVRDIVTLLQRGDQQVIR--GLMIDISEAKQTEQALRQ 434 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 55/185 (29%), Gaps = 22/185 (11%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 T + LV++V I Q + E+ + A S Sbjct: 519 GSLFTGLISASPYILDNTPALVMVVRDIS--------QLKSTQQQLQISEEKFAKAFHAS 570 Query: 415 GDIVWDWDI-VRDRVTTTPDIATILGLA----SGSMHGPIRNWLPYIHINDRDNFRTILD 469 D + + + + I G + + W DR+N + Sbjct: 571 PDGLLITRLRDGRLIEANEGFSHITGHSFDQNGEQSTLSLGIWAD---PKDRENMVQCIR 627 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 R VR Q + +P+ + NG+ + IA DITE+++ E + Sbjct: 628 EHGSVR----DMIAPVRTKSGQLRLCELSAQPL-SINGE-ECLLTIARDITERQQMQEEL 681 Query: 530 LCNAF 534 A Sbjct: 682 QQAAT 686 Score = 45.7 bits (107), Expect = 0.042, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 40/163 (24%), Gaps = 23/163 (14%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASG 443 ++ + Q + ++ + DI + + G++ Sbjct: 417 GLMIDISEAKQTEQALRQSEQKFASVFRQCPDILIIARRADGVLLEVNTAFTEQTGISIE 476 Query: 444 SMHGPIRNWLPY-----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G L I + D + E R AD +I Sbjct: 477 QAVGKTATELDLWGVPGIGP---SLLLRLQDECLR------NLELPFRRADGSLFTGLIS 527 Query: 499 IRPMSNSNGDILRYIGIANDITEQK------KSLEGILCNAFQ 535 P N + + DI++ K + E AF Sbjct: 528 ASPYILDN--TPALVMVVRDISQLKSTQQQLQISEEKFAKAFH 568 >gi|81299967|ref|YP_400175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Synechococcus elongatus PCC 7942] gi|81168848|gb|ABB57188.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Synechococcus elongatus PCC 7942] Length = 1047 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 152/573 (26%), Positives = 278/573 (48%), Gaps = 8/573 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +I + + + ER L D+V + +P +LG +S Sbjct: 474 GLIIDISDRKKIEAELQTSEERYRLLAENMNDLVCLHQADGTYLYVSPSAEALLGFSSEE 533 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 M G + H D D R V L +R+R + W +P+ + Sbjct: 534 MVGQNPY--DFFHPEDCDRIRDEAHQAVL-MGAELPIVYRMRKKLGGYIWFETLTKPIMD 590 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G ++ + D+T++ + + +A D+LTG+ NR ++RL L S N Sbjct: 591 DQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERLELSLKRSKRLQNY 650 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D++K IND LG GD +LVS+ +++ +++ D+ ARL G+ F +++ Sbjct: 651 KYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAARLGGDEFVVLVEDI 710 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A + +I +P+ L ER I + SIG + +++++L++A+ AMY A Sbjct: 711 QTFDEPIKVAERILAAIQVPLELEERSIYTSTSIGIVFGSHEYESATQLLRDADTAMYRA 770 Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG E F + S R+ ++ DL A+ E L Y PII+L +I G EALI Sbjct: 771 KSRGRARYEVFDSAMHSQALARLHLENDLRQAIARQEFVLYYQPIIQLQTGKITGFEALI 830 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIA 801 +W HP G + + IAEE +I +I+ ++L + R + W+ + + + +N++ Sbjct: 831 RWQHPTEGIKLPIDLIPIAEETGLITSIDYWVLNQACRQLSEWQASYSQAADLSMSVNLS 890 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 +++L + L + +Q+++ T P + L +ES+++ N +++ LL + + GI +++D Sbjct: 891 AQNLQHDHLMDEIQSVLQATKIKPGSLTLEITESMLIENTDQTIQLLAAINEQGIEISID 950 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL +P + +K +GS + T + I+ +II + + IA+ I Sbjct: 951 DFGTGYSSLSYLHKLPVNNLKVDGSFVRKITTESTNYQIVNTIIALNNQLGLKAIAEGIE 1010 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + L+++G Y Q A PL + +L Sbjct: 1011 THEQLDLLSQLGYQYGQGYLFARPLNAKDVEQL 1043 Score = 78.1 bits (191), Expect = 7e-12, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 6/149 (4%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGLA 441 + Q + + R I++ + D + + G+ Sbjct: 344 IQQELSDRSKAELALQESQTRFQRIADNLPGIIYGYKLRQDGTDQFTYISSGFREVYGID 403 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + IH D + +T + + E+R+ + + WM R RP Sbjct: 404 PETALENSNVVWGMIHPEDIEYLKTSIIKS-QQTLKTWKVEYRIITKNGELKWMQGRARP 462 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 NG+ + G+ DI+++KK + Sbjct: 463 TRQENGE-TFWDGLIIDISDRKKIEAELQ 490 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 3/160 (1%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 +L + + F + R V D++ V + Sbjct: 30 ALLAESDLVTEESEQASTGRLAIDQYFRESLRYQQVVEAQTDLILRSRSDTTVVFANKPL 89 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG G + G W + ND + + + R AD + W Sbjct: 90 CQVLGWQDGDISGQ--TWGNLVPPNDLSELHEKIAG-LSLENPTFESLNRNYGADQRIKW 146 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + + N G+++ + D+T + + + Sbjct: 147 IQWVNQGIFNDRGELIEIQSVGRDVTTLIEQITREKTLNY 186 >gi|300855041|ref|YP_003780025.1| putative signal transduction protein [Clostridium ljungdahlii DSM 13528] gi|300435156|gb|ADK14923.1| predicted signal transduction protein [Clostridium ljungdahlii DSM 13528] Length = 622 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 142/607 (23%), Positives = 283/607 (46%), Gaps = 12/607 (1%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 ++ I + I + + V IV ++ VI + + + +R Sbjct: 9 LFSIIENLKIAGYVSFYSRYKTVFFIAVTIVAVLLSFVI--IFYINIKKRNLM--EQRYK 64 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI- 467 LA S +W++DI ++ + I G + ++ L + ++ Sbjct: 65 LAAESSNIAIWEYDIEKNNFFASDKWKEITGYKVSK-NDNLKIILEKLLPDENKKIMLNY 123 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L++ + + EF++ + W+ IR + + N+ G L+ G DITEQK + Sbjct: 124 LENHLAGITPFYECEFKLTTKGGKKKWIFIRAKALRNAKGKALKIAGYVTDITEQKLIQD 183 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + D+LT +PNR+ F D+L +L S+ +D + ++ ID+D +K++ND LG Sbjct: 184 KNKYLGYYDSLTDLPNRKMFQDKLNKVLKSSSENDK-KGALLFIDVDNFKRVNDTLGHQC 242 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + + +++ + + RL G+ F II + I + + P + Sbjct: 243 GDKLLQYVANTLKNIMEEDNTVFRLGGDEFLIIQHDIKDKNDIVKVCNKIIFAFKAPFKI 302 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705 E I ++ASIG + + T+ +LKN+++AMY AK + + +S S + Sbjct: 303 NENLIHISASIGISMYPQDGTTADSLLKNSDIAMYKAKDSCKGIYKFYNRRMSYEVSRKA 362 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++E L A+EN++ L Y P I +I +EAL++W + +S EF+ +A++ Sbjct: 363 ELEEGLRTALENNQFQLYYQPEIDCKTGKIKAMEALLRWKVGENEFVSPIEFIPVAKDTS 422 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++LE + W D+ I I IN++ L + ++ ++ ++ P Sbjct: 423 LIVPIGKWVLETACKQHKQWLDKGYDFGI-ISINVSKVQLQHPSFFKMVKTVLHESNLPP 481 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 +++ +ES VM + + + L +LR++GIS+ LDDFGT S L+YL +P +T+K + Sbjct: 482 ELLEIEITESEVMQSLQSNIAALEKLRRLGISIALDDFGTGYSSLNYLRLLPINTLKIDK 541 Query: 886 SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + +++ II ++ + +++A+ + + L M C+ ++ + P Sbjct: 542 FFINRIHLNSRDCSVVDGIINLSHKMNISVVAEGVEFVKQFQILRSMNCNKVEGYLFSKP 601 Query: 944 LGFNSIL 950 + +I Sbjct: 602 MPVENIE 608 >gi|239787383|emb|CAX83859.1| conserved uncharacterized protein [uncultured bacterium] Length = 922 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 140/560 (25%), Positives = 262/560 (46%), Gaps = 15/560 (2%) Query: 402 SDGERQS---LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457 E+ AV S V + P + + G AS + G + L Sbjct: 360 QSEEKLRHLSQAVEQSPADVVITNAEGIIQYVNPRFSQVTGYASKEVIGKKPSILKSGRT 419 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + ++ ++ + + E R D W I P+ +++G I YI + Sbjct: 420 PA--ALYDSLWETISAGK--EWRGELMNRKKDGSLFWQHAIISPIRDNSGVITHYISVKE 475 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI+ +K+ E ++ A D LTG+PNR +DRL + + + + +M++D+D +K Sbjct: 476 DISIRKEYEERLVRQANYDALTGLPNRILAMDRLKQAIAQAQRYNR-KVALMLLDLDDFK 534 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 K+ND LG A GD +L R+ + L+ D +ARL G+ F ++L ++ A + Sbjct: 535 KVNDTLGHAAGDLLLKEAALRLVDCLREGDTVARLGGDEFVLLLPDLTDTSSAEVVAEKI 594 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + P ++ E + SIG A + + +++NA+ AMY +K G F Sbjct: 595 LAACNQPFDVGGHEAYIAGSIGIAIFPDDERDPILLMRNADAAMYRSKREGKGVFRYFTP 654 Query: 698 SS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + ++ L A+E +E+ + Y P++ +VG EAL++W +P G +S Sbjct: 655 EMNARALEHMRMESQLRHAIERNEMKVHYQPLVDSGTGRLVGAEALLRWSNPVLGEVSPE 714 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AEE +I +I ++L RD SW+ IF+ +NI+ K L E ++ Sbjct: 715 QFIPLAEETGLILSIGAWVLRTACRDAASWQR--PDHEIFVAVNISGKQFQKRTLVEIVR 772 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++++ P+ ++L +ESV++ + + + ++ L +G+ +DDFGT S +SYL Sbjct: 773 SSLNESGLPPACLELELTESVLLEHTQETLSIIQELESLGVGFAIDDFGTGFSSISYLRR 832 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFDT+K + S + E +++SII MA ++ ++ + + + L GC Sbjct: 833 FPFDTLKIDRSFIKDLGDNEGDADLVKSIIAMANSMSLKVVGEGVETHGQREFLRLSGCH 892 Query: 934 YIQDSHVASPLGFNSILKLL 953 Q + P+ +L+ Sbjct: 893 IAQGWLYSRPIPGKDFQELI 912 Score = 60.3 bits (145), Expect = 2e-06, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 41/151 (27%), Gaps = 10/151 (6%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + A + + + D + +D V+ + G + G Sbjct: 224 RDISARKQAEAASQAAKDHFLAFARSTPDALIAFDEEGRIVSWNEGAEAVYGFRQDEILG 283 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-----EFRVRAADNQFHWMIIRIRPM 502 L + + RGR + E + + + Sbjct: 284 SP---LSRLIPERYHAINAAWVKRMAKDRGRHNFTGKPIEAHGLRKSGEEFPVEYSVGR- 339 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 G + A DI+++K+S E + + Sbjct: 340 WREAGRNFFSVA-ARDISKRKQSEEKLRHLS 369 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 12/157 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-S 442 T + + ER V + D + V ++G Sbjct: 96 ITTYTDISERRNAEVRLRESEERFRRLVELAPDAILVHQ-GGTIVYANRQAQIMMGAPTP 154 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G R+ + I D L + L E R+ D + + Sbjct: 155 TDLIG--RSIIEIIDPACHDLVAKRLKLLARGEQLPL-VEMRLVRLDGGQVEVESTMG-- 209 Query: 503 SNSNGDILRYIGIANDITEQKKSL-----EGILCNAF 534 + G + DI+ +K++ AF Sbjct: 210 MTTYGGHRAMQSVWRDISARKQAEAASQAAKDHFLAF 246 >gi|124265854|ref|YP_001019858.1| signal transduction protein [Methylibium petroleiphilum PM1] gi|124258629|gb|ABM93623.1| signal transduction protein [Methylibium petroleiphilum PM1] Length = 1006 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 138/590 (23%), Positives = 264/590 (44%), Gaps = 10/590 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L V++ V + + ++ ER + + GD V D P ++G Sbjct: 419 LRTLAVLKDVTEQKRLALELAAEKERIEVTLHSIGDGVISTDEAGRITYLNPVAEQMVGC 478 Query: 441 ASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIR 498 G + + ++ + R ++ +R + + + I Sbjct: 479 LLAQARGLPFAQVVQLFDQESGAPLPSPVEQCLQDREVYGVRESAALRHRSGRDYGVQIS 538 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 P++ +G +L + + D+TE + + + A D LTG+PNR F DR+ Sbjct: 539 AAPIAGRDGRVLGAVMVFQDVTEARGLAQKMSYLAHHDGLTGLPNRVLFQDRVHQACQSG 598 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 R V+ +D+D +K +ND LG AVGD++L ++ +R+ L+ D + RL G+ F Sbjct: 599 RRHGR-RFAVIFMDLDHFKHVNDSLGHAVGDELLKAVAQRLTGALRASDTICRLGGDEFV 657 Query: 619 IILISENNSL--KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 ++L ++ +A+ A + + +A P L E+ V AS+G A + ++K Sbjct: 658 VLLSDLDDVEVDGVAEVAKKILRQVAQPCVLGGTEVNVGASLGIALFPGDGEDPDTLMKR 717 Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY +K G N F S R+ ++ D+ A+ + + Y P++ + Sbjct: 718 ADAAMYRSKREGRNRYHFFSKAVDDAASARLQLEADMRRALAAGQFIVHYQPVVHGRTRD 777 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 V +EAL++WD G S + F+ +AEE +I + ++L + + +W A I Sbjct: 778 AVAVEALLRWDRAGQGLQSPAVFIPVAEESGLIVPMGHWVLRQACEQLRAWSGTALG-GI 836 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ L + + + ++ T SR++ +ES +M +PE + +L RL+ + Sbjct: 837 SVAVNVSPVQLAQADFVDTVADVLHATGVDGSRLEFEITESTLMQDPEATLEMLRRLKGL 896 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ + +DDFGT S L +L P DT+K + + + ++R+I+ MA+++ Sbjct: 897 GVRIAIDDFGTGYSSLGHLKRFPVDTLKIDHTFVRDLEADADDRELVRAILAMARSLRLH 956 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 ++A+ + E L M C Q A P G L++R + Sbjct: 957 VVAEGVETEAQAAILAAMECPAFQGYLFARPAGAAVTAAWLQDRAATLAR 1006 Score = 69.6 bits (169), Expect = 3e-09, Method: Composition-based stats. Identities = 22/209 (10%), Positives = 61/209 (29%), Gaps = 3/209 (1%) Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380 Y + A + I + + + + + + L +++ Sbjct: 231 VYVSVALMLVAAVGGFAGAATGGLLASLSVGIVIALGLFQPGPGEGWLETVAFYLPVVLT 290 Query: 381 LIGFTVIQHVL-ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 L+ ++ + I + + ++ D+ R V LG Sbjct: 291 LVPPLLLAAAMERNRQHVHEIEDREAQFRTLYERTPVMMHSVDVERRLVAVNDAWLARLG 350 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G ++ R+ + ++++ + + I Sbjct: 351 YERSEVLGRRST--EFLTAESRERAERSIIPRFMREGELRDMDYQMVTRSGEVLDVQISA 408 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++++G LR + + D+TEQK+ Sbjct: 409 IWETDAHGQPLRTLAVLKDVTEQKRLALE 437 >gi|146309323|ref|YP_001189788.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas mendocina ymp] gi|145577524|gb|ABP87056.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas mendocina ymp] Length = 766 Score = 556 bits (1432), Expect = e-155, Method: Composition-based stats. Identities = 153/556 (27%), Positives = 274/556 (49%), Gaps = 9/556 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + + V D + V P + I G ++ + G L Sbjct: 196 QRANDESLRQAAAVFDATQEGVLVTDPEQRIVHVNPAFSRITGYSAEEVLGQHPTLLKSG 255 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + F L + + R E R + + IR + + +G I Y+ + Sbjct: 256 RHD--AAFYQSLWQAL-HNRDAWSGEVWNRRKSGEIYPQWQCIRVIHDEHGRISHYVAVF 312 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT K+S + A D L+ +PNR F +R+ L+ S + LR V++ID+D + Sbjct: 313 SDITALKRSQRELDYLAHHDPLSNLPNRLLFTERIAHALERSK-SEQLRGAVLLIDLDHF 371 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IN+ LG VGD +L S+ R+ + L LARL G+ FG++ + ++ + A+ A Sbjct: 372 KHINESLGHNVGDLLLKSVGERLQQDLPGGCTLARLGGDEFGLLSETCADAPQAAELAQN 431 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + + P L E E+ + ASIG + + + ++L+NA+ A++ AK G + Sbjct: 432 LLRCLEAPFRLDEHELYIGASIGISLFPDDADSVEQVLRNADSALFKAKSSGREGYAFYV 491 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + RV + L A++N EL + Y P+ L + VG+EAL++W HP+ G I Sbjct: 492 QELTDYARQRVELASSLRHALDNHELRVFYQPLHDLENGNPVGMEALVRWQHPQRGLIPP 551 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +EF+ IAE+ MI I+ ++LE+ ++ W + + F+ +N++S+ EL + Sbjct: 552 AEFIPIAEDNGMIGPIDAWVLEQACGQMMRWNAEGSALR-FVAVNVSSRLFSRGELDLKV 610 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++++T SP +++L +ES +M +P+ + LL RLR +G+ L +DDFGT S L+ L Sbjct: 611 AQVLAETGLSPQQLELEVTESAIMEDPDAALSLLTRLRALGVRLAIDDFGTGYSSLARLK 670 Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G + AI R++I + ++ ++A+ I + L +GC Sbjct: 671 RLPVDKLKLDQSFVRGLPDDIEDAAIARAVIALGHSLGLNVLAEGIESPAQVDFLRALGC 730 Query: 933 DYIQDSHVASPLGFNS 948 DY Q H P + Sbjct: 731 DYGQGYHFGRPAPVTA 746 Score = 152 bits (385), Expect = 3e-34, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 6/186 (3%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + +GL +A +RL + + L+ +++ +H + S+ ER Sbjct: 28 LLTVLGLSLAQLERLQSLKGLIFVGLTAALLYLVLH----RHAQQYRRARLQLTSNEERL 83 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 LA+ + D +WDWD RV +P A +LGL ++ W +H DR+ Sbjct: 84 RLALDATRDGLWDWDFAAQRVFFSPSYAALLGLTPQALGDTRDAWAERLHPEDRERVLQA 143 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L + + +R+R AD + W R R + + G R+IGIA+DIT+Q+ + E Sbjct: 144 L--ALDQQYDSYDNVYRLRHADGTYRWFHSRGRLLRDEGGRPQRFIGIASDITQQRANDE 201 Query: 528 GILCNA 533 + A Sbjct: 202 SLRQAA 207 >gi|118581402|ref|YP_902652.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118504112|gb|ABL00595.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] Length = 876 Score = 555 bits (1431), Expect = e-155, Method: Composition-based stats. Identities = 161/589 (27%), Positives = 279/589 (47%), Gaps = 16/589 (2%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TT 430 G LI L G+ + +LA+ +R + + DI+ DI R+ Sbjct: 281 FLGFCLISSLTGYILYAKLLASRK---ERKDTEKRYRSVISQASDIILLVDIDSRRILEA 337 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +L A I +DR ++ + + L E VRA D Sbjct: 338 NLAFQRLLNYAPDKATQLTLYD---IMEDDRSGVDWRINRILSEKVCFL-GEHTVRAEDG 393 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + + S G+ + DI+E+K+ ++ A D LTG+PNR F DR Sbjct: 394 SMVEVDLNANLV--SYGEQQVICMVLRDISERKRFEGELMHMAHHDALTGLPNRTLFFDR 451 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L + V+ +D+D++K IND LG GD +L + R+ +++ D ++ Sbjct: 452 LRQGLYKKERSGKM-LAVIYLDLDRFKIINDTLGHHTGDMLLKEVADRLRGVVRKADTIS 510 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ F II+ A + + P L + E+ +TAS+G + + T+ Sbjct: 511 RLGGDEFTIIIDEIATPADSLLVAEKILHVFSAPFRLEKHEMFITASMGVTLYPNDGDTA 570 Query: 671 SEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728 ++LKNA+ AMYHAK G N + F ++S S+R+ ++ L A+ +E L Y P + Sbjct: 571 EKLLKNADTAMYHAKEEGRNTYQFFSEEMNSRVSERLSMETGLRHALARNEFLLHYQPRV 630 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 IVG+EALI+W P+ G I F+ +AEE +I I ++L +W++ Sbjct: 631 NTTTGRIVGVEALIRWQQPQKGLILPDAFIPLAEETGLIIPIGEWVLRNTCTQARAWQEA 690 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + I +NI+ + + L + ++ ++ +T PS ++L +ESV+M NPER+ LL Sbjct: 691 -GFAQMRISVNISCRQFTHDNLPDTIRGILRETGLQPSCLELEITESVIMLNPERAISLL 749 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 L+++GIS+ +DDFGT S LS L +P D +K + S ++G + ++ +II + Sbjct: 750 NELKEMGISIAIDDFGTGYSSLSLLKRLPADILKIDKSFVSGIPGNKSDETLVATIINLG 809 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 N+ ++A+ + + + L C +Q + + PL ++ LLK Sbjct: 810 HNMGLGLVAEGVERQEQLHFLEERNCQEVQGYYFSKPLPAETLQPLLKN 858 >gi|289208678|ref|YP_003460744.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] gi|288944309|gb|ADC72008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] Length = 944 Score = 555 bits (1431), Expect = e-155, Method: Composition-based stats. Identities = 147/584 (25%), Positives = 260/584 (44%), Gaps = 13/584 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 V A + + R V ++++ D P + G G Sbjct: 360 DVTAHRRAAAALKESENRYQDVVNHISEVIFRTDAEGRWTLLNPAWEALTGFKVEETLGQ 419 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 ++ DRD+ ++ + + E R+R D W+ I + +G Sbjct: 420 P--MCAFVDPEDRDDAQSFCSTLLEGGTHAQSEEIRLRTHDGSHRWVSIYASARFDEDGH 477 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I+ G DI+++K++ E I AF D LTG+PNR DRL L +A + V Sbjct: 478 IMATFGTMMDISDRKEAEEEIRRLAFFDGLTGLPNRTLLHDRLGQALANTARTRH-HGAV 536 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN--- 625 + ID+D +K IND LG AVGDD+L + RR+ ++ D LARL G+ F IIL + Sbjct: 537 LFIDLDNFKDINDTLGHAVGDDLLCQVARRMENSVREADTLARLGGDEFVIILNDLHPDP 596 Query: 626 --NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + + + P L + VT SIG ++ + E+LK A+LAMY Sbjct: 597 ARAATEAEAVGRKLINLLREPFQLAGQNRHVTPSIGATLFSGRSLGVEEVLKQADLAMYR 656 Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK+ G N V + R R ++ +L A++ +VY P + ++G E L Sbjct: 657 AKNAGRNTVRFYDPELHRAVEARFELENELRHALDEDRFSVVYQPQVDAE-GRVIGAELL 715 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+H + G IS +EF+ +AE+ +I I +L + +W+ A + + +NI+ Sbjct: 716 LRWEHAQRGAISPAEFIPVAEQTGLIVPIGRKVLRTACAQLGAWQHTAAFRDLTLSVNIS 775 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ D ++ ++ +T R+KL +ES+++ + + LR +G+ LD Sbjct: 776 ARQFRDPHFVPHLREILQETGAPGDRLKLELTESMLLEEIDTVVAHIDELRALGVEFALD 835 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P +K + S + AI + ++ +A+ ++ +IA+ + Sbjct: 836 DFGTGYSSLAYLKQLPLAQLKIDQSFVRDVLDDPNDAAIAQMVVNLARTLDLDVIAEGVE 895 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 L +GC + Q P + + + P ++ Sbjct: 896 TVEQRAFLFGLGCRHFQGFLYGYPGDLADLERAVLGASPSFESA 939 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 6/130 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPY 455 +Q + R + G+ I+W+ + D +LG S ++ G + Sbjct: 243 NQQLNRSVARLESMLGGANAILWESNPESHEWEFVAGDTRKLLGFPSRNL-GRGELRARH 301 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 IH +D R + ++R + Q+ W+ + + G G+ Sbjct: 302 IHPDDLPRVREAAHAA---GNEPQVVDYRFAHRNGQWIWLRDILSSAEDP-GSRRSLRGL 357 Query: 516 ANDITEQKKS 525 D+T +++ Sbjct: 358 TLDVTAHRRA 367 >gi|83312716|ref|YP_422980.1| hypothetical protein amb3617 [Magnetospirillum magneticum AMB-1] gi|82947557|dbj|BAE52421.1| Hypothetical protein yddU [Magnetospirillum magneticum AMB-1] Length = 802 Score = 555 bits (1431), Expect = e-155, Method: Composition-based stats. Identities = 152/598 (25%), Positives = 290/598 (48%), Gaps = 15/598 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL------AVLGSGDIVWDWD 422 A+ L + + + + FS+ + +R+ A+ + V D Sbjct: 206 HAIGAKLFDVHMHLVADSVGQRDRVAIFSRDVTQSHQRRQQLRKLETALEQAPVSVMITD 265 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + G + + G L + + + Q E Sbjct: 266 SHGAIEYVNRAFVLVSGYSEDEVLGRNPRLLKSG--ETVASLYRDMWHCLA-SGATWQGE 322 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 RA D W I P+ + +G + ++ + +IT++K++ + ++ A D LTG+P Sbjct: 323 LCNRAKDGSLFWEYATISPIRDDDGVVTHFMAVKENITQRKETEQQLVHQATHDTLTGLP 382 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR DR+ ++++ + R +M +D+D++K +ND LG GD++L ++ R+ Sbjct: 383 NRLLLEDRVHHAIEVAKREGR-RIGLMFLDLDRFKIVNDSLGHVAGDELLKVVSDRLRHT 441 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L+ D +ARL G+ F ++L ++ ++A+ A + ++ P+ L ++ V ASIG A Sbjct: 442 LRRSDTVARLGGDEFVVVLTHFQSTTELAEVAEKISAALDEPVELSGHKVHVGASIGIAI 501 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSEL 720 + + ++K+A+ AMY AK +G N + ++ DR+ ++E L A+ E Sbjct: 502 YPDDGDNFNALMKDADTAMYRAKQKGRNTFCFYDSNMNDEALDRLKLEEALRRALVRGEF 561 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P + L G+EALI+W+ P+ G +S + F+ +AEE +I I ++LE R Sbjct: 562 QLFYQPQVDLQTGRTSGVEALIRWNSPERGQVSPALFIPVAEESNLISMIGWWVLEESCR 621 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 I +WR+ I + +N++ + L++ L E + L+++ PS++++ +ES VM Sbjct: 622 QIAAWREAGL-TGIKVAVNVSGRQFLNHALVECISDLMAQYAVLPSQLEIELTESTVMAE 680 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAI 898 P+R+ L RLR+IGI +++DDFGT S LSYL +P T+K + S + AI Sbjct: 681 PDRAIEQLTRLREIGIQVSVDDFGTGYSSLSYLKRLPLSTIKVDRSFVRDVNNQSDNAAI 740 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + +I+ +A ++ +I+A+ + E + + L GC +Q A P+ + + + + Sbjct: 741 VSAILGLADALDMSIVAEGVETEGEEQHLKDAGCIKVQGFRYAKPMPADQLAAWMLRQ 798 Score = 42.2 bits (98), Expect = 0.42, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 48/170 (28%), Gaps = 8/170 (4%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + + L + + V Q I + S D + + Sbjct: 89 GSSFWSVLTIRSATLNGEAVNLAWLYDVSKRKQAEQAILDGKTLIRAMLDSSTDGIVLVN 148 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + I S + G ++ + R +D + RR ++ Sbjct: 149 AEGTILAVNAAASAIFEKNSDDLPGKAI--WDHLPDSVVAPMRRGIDRVLD-RRETVESH 205 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + A + + +++S G R + D+T+ + + + Sbjct: 206 HAIGAK-----LFDVHMHLVADSVGQRDRVAIFSRDVTQSHQRRQQLRKL 250 >gi|171059694|ref|YP_001792043.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170777139|gb|ACB35278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 1147 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 148/568 (26%), Positives = 260/568 (45%), Gaps = 13/568 (2%) Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 ER LA + + V D R V+ T+LG + G L Sbjct: 584 LQAEERLRLAAQVFDSTQEGVMITDARRRIVSVNRAFTTLLGYTETEVLGQTPRMLSS-G 642 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +DRD F + + + + G Q E R D ++ I + + +G + Y+G+ Sbjct: 643 RHDRD-FYEAMQAQLDH-TGLWQGEIWNRHKDGSPVPELLSISAVRDPHGQVTHYVGVFT 700 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT K+S + A D LT +PNR F +RL L + + R V+++D+D++K Sbjct: 701 DITHLKESEARLEFLAHHDPLTHLPNRLLFNNRLDQALHQAEREGR-RLAVLLLDLDRFK 759 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND G GD++L + +R+ + L+ D LARL G+ F +++ + A A + Sbjct: 760 DINDSYGHLAGDELLKYVAQRLTQRLRQSDTLARLGGDEFALLMHDLRHDDDAARLASEL 819 Query: 638 RKSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 ++ P + E++V SIG + T +L+ A+ A+Y AK G + Sbjct: 820 LSGLSEPWRSSEGVEVSVGVSIGICIYPDHGRTPQTLLQGADAALYRAKGDGRGVYRYYA 879 Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R +R+ I+ L A+ + +L L Y P + L I+G EAL++W P+ G I Sbjct: 880 DEMTRIARERLHIEARLRRALADGQLLLHYQPQVDLRSGRIIGAEALVRWQDPEQGLIPP 939 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE +I I ++L R +W D P + + +N++ + +L + Sbjct: 940 VRFIPVAEATGLIGEIGAWVLGEACRQARAWLDAGL-PALTVAVNVSPRQFHQADLATQV 998 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ +T P+ ++L +E +M + +L RLR +G+ + +DDFGT S L+ L Sbjct: 999 MQVLVETGLPPTHLELELTEGALMEREAEALQVLQRLRGLGVGVAIDDFGTGYSSLASLK 1058 Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S +T + I +II M ++ ++A+ + + L + C Sbjct: 1059 RFPIDVLKIDRSFITDIPDDPDDMEIAAAIIAMGHSLGILVLAEGVETAEQLAFLQQRNC 1118 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLV 960 D Q + PL + +LL+E+ L Sbjct: 1119 DRYQGFLRSRPLPAQAFEQLLREQASLT 1146 Score = 119 bits (298), Expect = 3e-24, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 2/150 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + A + LAV GSGD +WDWD++ D+++ A +L Sbjct: 447 LAIARDITAERDARAALQRSEASLRLAVDGSGDGLWDWDLITDKISFGAAYARLLRYPGN 506 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + R + +H +DRD + + + Y +R+R D ++ W R Sbjct: 507 DLARDFR-FRERLHPDDRDRSIAAVRNSIEY-GTPFVATYRMRCFDGEYRWFQGRGMCHR 564 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNA 533 +++G R+ G+ D+T++ ++ E + A Sbjct: 565 DAHGTPQRFSGVLTDLTDRLQAEERLRLAA 594 Score = 78.5 bits (192), Expect = 6e-12, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 10/182 (5%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + W+ + + + L LI + Sbjct: 8 ATLILLLGTAWLVAGPQPASWFTAIQTLLCASLAGWLI--------RRAARAQEQAEQAH 59 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 +R + V + + + A I+G + H +D Sbjct: 60 KRVADVVADAAVGISLTALDGRLTEVNRRFAEIVGRTVEE--TQRLRFQDITHPDDLAAD 117 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + R R + E R D+ W+ + + ++G ++I + DIT K+ Sbjct: 118 LDKVADLLAGRIDRYRMEKRYLRPDSSTIWVTLTVSLARGADGQPRQFISVVQDITAVKQ 177 Query: 525 SL 526 + Sbjct: 178 AE 179 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 4/123 (3%) Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 D V D+ + P ++GL+ + G L I+ D Sbjct: 195 SIPDCVAVRDLDGRYLLANPAAERLIGLSEAEICGRT---LEQIYPEPEAGQARRADRLA 251 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + G ++ E AAD + + I P+ +G I + D++ +++ +L Sbjct: 252 LSQNGLVRREASYTAADGSVATVDLAISPLLGIDGRATGIISVGRDVS-RERHNLRLLEQ 310 Query: 533 AFQ 535 A + Sbjct: 311 AHR 313 >gi|77920527|ref|YP_358342.1| signal transduction protein [Pelobacter carbinolicus DSM 2380] gi|77546610|gb|ABA90172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter carbinolicus DSM 2380] Length = 1141 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 156/576 (27%), Positives = 270/576 (46%), Gaps = 13/576 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 L I + R L + S ++ + P A I G + Sbjct: 548 EKHQRLRVQELIDNIDAAESRYQLLIENSLVGIFVYQ-HHRYTYVNPRFAEIFGYTPEEI 606 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMII-RIRPMS 503 +H +D+ +G L+YEF Q + I R + Sbjct: 607 VDSAPQP-QLVHPDDQLFVDANNLKILGGVNANHLRYEFVGLRKTGQPIDVEILIGRGI- 664 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 S G IG DITE+K++ + I AF D LTG+ NR F+DR+ + + + Sbjct: 665 -SEGQPA-LIGSLLDITERKEAEKTIEHLAFHDPLTGLANRLLFMDRIEQAIAHAHRH-H 721 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +M +D+D++K IND LG + GD L + +R+ L+ D ++R G+ F ++L Sbjct: 722 ESFALMFLDLDRFKTINDSLGHSAGDAALKEVAQRLTTCLRETDTVSRFGGDEFNVLLSG 781 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ +I A + KS+A P ++ + E+ +T SIG AS+ + ++KNA+ A+Y Sbjct: 782 PSHEEEIELIAHKILKSLAWPYDINDHEVFMTCSIGIASYPKDGREAITLVKNADTALYR 841 Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + + +++ +R+ ++ L E EL + Y P + L I GLE L Sbjct: 842 AKDLGRNNFQFYSSSMNARALERMAMESSLRRMFERQELRVHYQPQVGLQSGRITGLEGL 901 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+HP I+ S F+ +AEE +I + ++L+ + +W D P+ + IN++ Sbjct: 902 VRWEHPVGNMIAPSVFVPLAEETGLIVPMGEWVLQAGCYQLKTWLDA-GFAPMRLGINVS 960 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L ++ E + ++ + P + L +E+V+M N + L RLR +GI++++D Sbjct: 961 AHQLQKSDFAELVMQVLKECDLPPHYLNLEITETVIMHNMNEAFETLRRLRAVGITISID 1020 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL +P D +K + + + I R II MA + +IA+ + Sbjct: 1021 DFGTGFSSLSYLKDLPADHLKIDRAFVQNLPFGNNEANIARHIIEMAHGLNLKVIAEGVE 1080 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + L GCD IQ V+ PL I ++L Sbjct: 1081 NQAQLDFLREAGCDEIQGFLVSRPLAAEDITEILTN 1116 >gi|213966757|ref|ZP_03394908.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] gi|213928607|gb|EEB62151.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] Length = 1278 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 148/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 710 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 768 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 769 ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 826 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 827 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 885 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 886 KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 945 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 946 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 1005 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 1006 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1065 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1066 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1124 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1125 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1184 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1185 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1244 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ Sbjct: 1245 EHGCDEVQGYLFGRPMPPKQFEA 1267 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 561 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 620 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 621 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 678 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G+ G+ DI++Q+++ + + A Sbjct: 679 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 722 Score = 53.8 bits (128), Expect = 2e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 + + + + LG + + +H +D +++ + L LQ Sbjct: 468 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 527 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532 R R +N + +R + + ++ + R IGIA DITEQ + S + Sbjct: 528 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 587 Query: 533 A 533 A Sbjct: 588 A 588 >gi|288957149|ref|YP_003447490.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510] gi|288909457|dbj|BAI70946.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510] Length = 1021 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 149/648 (22%), Positives = 283/648 (43%), Gaps = 13/648 (2%) Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375 ++ + + L W+++ + L ++ L ++ + Sbjct: 343 LNLAAIAAQTGPIDRLVNKPFSFLETYRWLVLSVGGALLLLSGMVLLLAFALRQRRMAEA 402 Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL-----AVLGSGDIVWDWDIVRDRVTT 430 L V + L D R+ S DI+W WDIV D Sbjct: 403 ALQVSNQALGESRRELQGKVEELTASKDALRERERRMRLVAESSRDILWTWDIVNDIRVL 462 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 + + +LG+ + S+ R W IH D+ L + + E+RVR D Sbjct: 463 SGRVEELLGIDALSIDSR-RAWTDRIHPEDQALAAEALQRHLSGELPDYRAEYRVRHRDG 521 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + W+ + ++ G G DIT+QK+ + A D LTG+PNR + Sbjct: 522 NYLWIYATGKATFDAGGKPTMMAGSYTDITDQKRQQAWLDHLAHFDPLTGLPNRLTLEQH 581 Query: 551 LTTILDLSATDDNL-RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 + ++ + N ++ +D+D +K IND G GD++L+ L RI + L Sbjct: 582 VDRLIADNKASGNAAPLALLFLDMDNFKFINDGFGHKSGDELLMMLGLRIRKGAGDGVFL 641 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL G+ F +++ ++ + + A + +++A P + + V+ S+G A + Sbjct: 642 ARLGGDEFVVVVQG-GDAEEPVEVARRVEQAMAAPFLVEGQHFFVSCSVGIARYPWDGRC 700 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPI 727 ++L+NA+ AMY AK G + +F R+ +R+ + LA E L Y P Sbjct: 701 FDDLLQNADTAMYRAKDSGRGRICTFTSDMNRNVVERMRLLSRARLAFERQTFSLHYQPQ 760 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + D + G EAL++W + G +S F+ + E+ +I + ++LE + + Sbjct: 761 VATADGRVRGFEALVRWTDSELGPVSPDRFIPVCEDSGLIVPLGFWVLETACIEAVGL-A 819 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + + +N+++ L ++ + +++ T P R++L +ES ++G+ + + Sbjct: 820 CRGAGEVTMSVNMSAVQLAQHDFVPRVLEILANTGLPPHRLELEITESQMIGSLDAAIEK 879 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPM 905 L LR+ GI + LDDFGT S L+YL +P +T+K + + + +++ SI + Sbjct: 880 LNLLRRAGIHIALDDFGTGYSSLTYLRTLPINTLKLDKAFINDVHRRPDARSMVSSISRI 939 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A ++ ++A+ + + L +MGCD IQ V+ PL + I L Sbjct: 940 AHDLTRKVVAEGVEDTAQWEVLAQMGCDLIQGYFVSRPLPADRIDAFL 987 >gi|77461097|ref|YP_350604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas fluorescens Pf0-1] gi|77385100|gb|ABA76613.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens Pf0-1] Length = 1282 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 148/563 (26%), Positives = 266/563 (47%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G A + + N L Sbjct: 714 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPNMLTVD 773 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D + R +L ++ + E ++ + + + + I + + GD+ Y+ Sbjct: 774 EQQD-AHLRYVLKQL--HQHSTWEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 830 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL T L + + +M +D+D++ Sbjct: 831 SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSW-VVLMFLDLDRF 889 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L ++ + Sbjct: 890 KPINDSLGHAAGDRMLKDMATRLLACVDDDDTVARMGGDEFTLLLQHRSSREMALNRAIH 949 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 950 VAEQILGSLVRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1009 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP+ G Sbjct: 1010 QFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1069 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + +++ R + +W P + +NI+++ D +L Sbjct: 1070 LVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQSRVRVP-KVSVNISARQFSDGQL 1128 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ +T P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1129 GTRIATILKETGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFGTGYSSL 1188 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + + L Sbjct: 1189 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1248 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ Sbjct: 1249 EHGCDEVQGYLFGRPMPAGRFEA 1271 Score = 72.3 bits (176), Expect = 4e-10, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 58/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + S+ + +R + D+++ D +P + +LG + Sbjct: 565 IGVAKDITEQIEASESLRDSEQRYRMLAESISDVIFSTDSQLSLNYVSPSVQAVLGYDAE 624 Query: 444 SM--------HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-----RAADN 490 + + H+ DR L R Q + ++ AD Sbjct: 625 WIFQNGWQSTIANPQQLSGIYHLMDR--VSKALGKPEQLVTLRSQVQTQMFLFDCLRADG 682 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G +G+ DI++Q+++ + + A Sbjct: 683 RKIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLRMAAT 726 Score = 62.3 bits (150), Expect = 5e-07, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 I + + + S V D ++ D++ R + + + LG Sbjct: 432 ILSINDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNR 491 Query: 443 GSMHGPIRNWLP-YIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 +H + +H D D + R+ LQ + R R D ++ IR + Sbjct: 492 TELHQMGEYFWEILLHPEDADYYHRSRQMQRHAGYSQLLQCQLRFRHRDGKWRRFDIREQ 551 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + + + + R IG+A DITEQ ++ E + Sbjct: 552 ALARDKHDQVTRIIGVAKDITEQIEASESLR 582 >gi|149374686|ref|ZP_01892460.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter algicola DG893] gi|149361389|gb|EDM49839.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter algicola DG893] Length = 724 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 145/576 (25%), Positives = 270/576 (46%), Gaps = 22/576 (3%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + A + + E V S DIV+ D I ++LG + G Sbjct: 137 LRAHEHIRMRLEKSEELHRYIVNSSPDIVFMLDGDGHFCFVNSKIESLLGYQPTELCG-- 194 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ--FHWMIIRIRPMSNS-- 505 R++ + D L E R++ ++ I P+ Sbjct: 195 RHFRHILDDRDIARGTYALKGPNISADNPRTLEVRLKTRGSRKATRHFEITAFPIDPETW 254 Query: 506 ----------NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 NG RY G A D+TE+K++ I A+ D LT +PNR F DRL + Sbjct: 255 PHTNHDDGKYNGREARYYGTARDVTERKEAEAFINFQAYHDLLTRLPNRALFKDRLDLAI 314 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + + + VM +D+D++K IND LG A+GD +L ++T+R+ L+ D L+R G+ Sbjct: 315 THARRSEQ-KLAVMFLDLDRFKVINDTLGHAMGDRLLQAVTQRLERCLRKGDTLSRFGGD 373 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F ++L S + + + K++ P L + E+ V SIG A++ + + ++++ Sbjct: 374 EFTLLLPSIHGYEDARQISKKLIKALRAPFQLGDHEVFVGVSIGIATYPEAGESMDQLIQ 433 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 NA++AMYH K RG + + +S ++R+ ++ DL +A+E EL + Y P + Sbjct: 434 NADIAMYHVKARGKDGYRFYSESMSIDTANRLSLERDLRMALERDELRVFYQPQVCSSSN 493 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +VGLEAL++W HP+ G + +F+ +AEE +I ++ +L++ D+ W + Sbjct: 494 RVVGLEALVRWQHPERGLLYPRDFLPLAEETKLIAKLSECVLDQACHDVGQWIRE-GHSD 552 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++ + E + A + + P +++ +E+V+M + E+ L L Sbjct: 553 LRLAVNLSPVQVEHPRFVETLMAQLQAHGFPPQNLEIEITENVIMNDLEQISQKLRELAS 612 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+Y+ +P T+K + S + E I+ +I+ MA ++ Sbjct: 613 LGVRIAIDDFGTGYSSLNYIHRLPIHTLKVDQSFVKAIRRGEDGACIVNAIVAMAHGLKL 672 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I+A+ + + + L +GC +Q + Sbjct: 673 QIVAEGVETDEQLTYLKSLGCHQVQGFFYGPARPAD 708 >gi|119773224|ref|YP_925964.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B] gi|119765724|gb|ABL98294.1| GGDEF domain protein [Shewanella amazonensis SB2B] Length = 817 Score = 554 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 152/648 (23%), Positives = 297/648 (45%), Gaps = 17/648 (2%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI---VILIGFT 385 ++ + LLI ++ +F + + RL L + + V + Sbjct: 170 RFLQIWGGGALLILMFLTVFHYVGVRPLRSLLRLARLKQAEPLAQTVPMASSEVAKLQQY 229 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q L + + +R AV GS +WDW I + + +LG + Sbjct: 230 MYQTELKLKRTLKQLRDSEQRWLFAVEGSQTGIWDWQISSGELFLSDRWKEMLGYGPTEL 289 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504 +W +H +D+ L S++ + R++ + W++ R + Sbjct: 290 KNEYSSWEGRLHPDDKARVLERLQSYLKGEADVYESRHRLKHRQGHYIWVLDRGMVVEWQ 349 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G R IG D++E ++ + I A D+LT + NR++ +D L Sbjct: 350 EDGRPARVIGSQRDVSEDMRNQQAIAHQANHDSLTNLANRRAVMDALFEFQQAGPGSMLR 409 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS- 623 +++ID+D +K +ND LG GD +L+ R+ ++ARL G+ F I+++ Sbjct: 410 LGALLLIDLDNFKLVNDALGHHHGDRLLIQAAARLSGFFSGNALVARLGGDEFAIMVLDL 469 Query: 624 ----ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAE 678 E + + +++ IA L +++I VTAS+G + + +++LK+A+ Sbjct: 470 ATDTEQAAHQAMQLGAELKQQIARSFQLSDQQINVTASVGVCLFDNHHPVEPAQLLKHAD 529 Query: 679 LAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK G N + ++ + ++ +L A+E +L LV+ PI D E+V Sbjct: 530 MAMYAAKDGGRNGCALYSDELEDKATENLWLQNELRHAIEREQLSLVFQPIFNH-DGELV 588 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 EAL +W HP+ G IS ++F+ +AE+ +I I ++L + R + + ++ P + Sbjct: 589 CCEALCRWHHPERGPISPAQFIPVAEDSGLIIGIGQWVLLEVCRTLKAMSEKGTPMPA-V 647 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +NI+++ + E + AL+ SP++I+L +E ++ N + RLR G Sbjct: 648 AVNISARHFNQIDFVERLLALLKAHQVSPAQIELELTEYALLSNLNAISERMQRLRSAGF 707 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIA 915 S+ +DDFGT S LSYL +P +K + + + + AI+R+I+ MA ++ ++A Sbjct: 708 SIAIDDFGTGYSSLSYLQSLPLSRLKLDAAFVGRIGTEAGNAIVRAIVDMAHSLMLKVVA 767 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + + E L+ + CD+ Q + P+ + ++ + P ++ Sbjct: 768 EGVETEAQQAYLSSLECDFFQGYLLGKPMPASELVA--RRIAPSAQSA 813 >gi|74317474|ref|YP_315214.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74056969|gb|AAZ97409.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Thiobacillus denitrificans ATCC 25259] Length = 1212 Score = 554 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 154/555 (27%), Positives = 268/555 (48%), Gaps = 9/555 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + SG+ + D R + P + G A + G L +++R+ Sbjct: 661 YASIFEHSGEAILIADQARHIIAVNPAFTNLTGYALDDIRGEEPTILAG-GQASEESYRS 719 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 S + G Q E R D + + + + +++G + Y+ DITE+K + Sbjct: 720 TWASL--EQTGYWQGEIIDRRKDGTLYPKWMAVSVVRDADGVLTHYVASFTDITERKLAE 777 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 I A+ D LTG+ NR S +L L L+ + V+ +D+D++K IND LG A Sbjct: 778 AQIKHLAYHDPLTGLSNRFSLQTQLDQTLALARREQRT-LAVVFLDLDRFKSINDSLGHA 836 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 +GD +LV + RR+ + ++ DI+ARL G+ F ++L ++ A A + ++ Sbjct: 837 LGDQLLVEVARRLRDNVRDSDIVARLGGDEFVVVLTEVGDAAGAARVADKLLGALVPRYR 896 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 + + TASIG + + + ++KNA+ AMYHAK +G ++V+ F +S Sbjct: 897 IGGHALHTTASIGISLYPHDGDDADALMKNADTAMYHAKSQGRDNVQFFTPEMNQSVLKR 956 Query: 707 IK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ DL +AVE + L Y P I +V +EAL++W HP+ G +S +EF+ IAEE Sbjct: 957 LQFDHDLRVAVEAGQFELHYQPQINSTSGRVVKVEALVRWQHPREGLVSPAEFIPIAEET 1016 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + ++L R + WRD + + + +N+++ L L + + Sbjct: 1017 GLILPLGEWVLNEACRQLRLWRDA-GITDLTVAVNLSAHQLHSPALIPMVARTLGNHGLE 1075 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + L +ESV M + S L LR +GI L++DDFGT S LSYL +P DT+K + Sbjct: 1076 GADLCLEITESVAMRDTTASIAQLQALRDLGIHLSIDDFGTGYSSLSYLKLLPIDTLKLD 1135 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + +AI + I +A ++ ++A+ I E + L CD++Q ++ Sbjct: 1136 QSFVCEIEFNPSDVAICAATIALAHSLGLEVVAEGIETETQRRLLASHRCDFMQGYLFSA 1195 Query: 943 PLGFNSILKLLKERF 957 PL L ++E+ Sbjct: 1196 PLPAERALAYIREQQ 1210 Score = 90.4 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 1/139 (0%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + R A + W D+V ++ + ++ I + +L Sbjct: 525 RAEAALKESESRLKEAQRIAQVGSWALDLVTGKLIWSDEMFRIFETDEAAFGQSYEAFLD 584 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H DR++ V R+ D + W+ R NGD + G Sbjct: 585 ALHPEDREHVNKAYMHSVTNHT-PYDLVHRLLLPDGRVKWLHGRGETRYGKNGDPIASCG 643 Query: 515 IANDITEQKKSLEGILCNA 533 DIT +KK + + A Sbjct: 644 TVQDITARKKQEDALRLYA 662 Score = 54.6 bits (130), Expect = 8e-05, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 42/133 (31%), Gaps = 4/133 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + Q + +G +V D + + + G R +I Sbjct: 398 SRELRELSALQGAILEHAGALVVVLDREGRIRRFNRACEALTQYSFSEVEG--RQVWDFI 455 Query: 457 HINDRDNFRTILDSFV--GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +R + + + + R A D + + ++ G + + Sbjct: 456 PPEERRIVQDEAFAVLFNDPEQSRSTLTNHWVARDGGRRLIEWSNSVLHDAQGKVEFVVA 515 Query: 515 IANDITEQKKSLE 527 + ND+T++ ++ Sbjct: 516 VGNDVTDKMRAEA 528 >gi|28871763|ref|NP_794382.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855015|gb|AAO58077.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 1278 Score = 554 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 148/563 (26%), Positives = 265/563 (47%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 710 QRRAEKDLRMAATVFEHSASAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 768 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 769 ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 826 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 827 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 885 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 886 KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 945 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 946 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 1005 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 1006 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1065 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1066 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1124 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1125 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1184 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1185 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1244 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ + Sbjct: 1245 EHGCDEVQGYLFGRPMPPSQFEA 1267 Score = 75.8 bits (185), Expect = 4e-11, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 561 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 620 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 621 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 678 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G+ G+ DI++Q+++ + + A Sbjct: 679 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 722 Score = 53.8 bits (128), Expect = 2e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 + + + + LG + + +H +D +++ + L LQ Sbjct: 468 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 527 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532 R R +N + +R + + ++ + R IGIA DITEQ + S + Sbjct: 528 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 587 Query: 533 A 533 A Sbjct: 588 A 588 >gi|330987546|gb|EGH85649.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1250 Score = 554 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 266/563 (47%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 682 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 740 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 ++ R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 741 ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 798 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 857 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 858 KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 917 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 918 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 977 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 978 QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKQWHQARVRVP-KVSVNISARQFSDGQL 1096 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1097 GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ + Sbjct: 1217 EHDCDEVQGYLFGRPMPASQFEA 1239 Score = 76.1 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 592 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 593 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 650 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + NG+ G+ DI++Q+++ + + A Sbjct: 651 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 694 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 400 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 459 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + +H +D +++ + L LQ R R +N + +R + Sbjct: 460 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 519 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DITEQ + S + A Sbjct: 520 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 560 Score = 38.0 bits (87), Expect = 8.5, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 34/188 (18%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425 A + G LI +L+ + +++ + + R G+G + D+ Sbjct: 226 LAPLIGKCLIGLLLSILPLIALMSLRKRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 285 Query: 426 ----DRVTTTPDIATILGLASG----------------------SMHGPIRNWLPYIHIN 459 V T D +L + + W P I Sbjct: 286 QLEALEVRTDEDFELLLKSQPASLKRLLQQLRINELNEVALGLLEIEHSEQAWQPLIEGE 345 Query: 460 DRDN---FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R ++ + + RL+ E + A Q + + +R + S D I Sbjct: 346 SRSRPGIGVQVIQAVLAG-LPRLELEICLTRASGQDQHLWLVMR-LPESRSDFDAVILSI 403 Query: 517 NDITEQKK 524 DIT +K+ Sbjct: 404 GDITSRKQ 411 >gi|295400041|ref|ZP_06810021.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] gi|294977820|gb|EFG53418.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] Length = 574 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 142/549 (25%), Positives = 275/549 (50%), Gaps = 12/549 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468 + S + + D + P + G ++ + G R +H D+ + + Sbjct: 21 ILEYSSESMIVTDAQNRILFVNPAFEIVTGYSADEVIGKNPRILQSGMH--DKSFYEKMW 78 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ + G + E + D + + + I + + G++ Y+ I +DITE K+++E Sbjct: 79 NAL--NQYGVWKGEIWNKRKDGELYLEWLTISAVKDQRGNVTNYVAIFSDITEHKRNMEQ 136 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LT +PNR F RL +I+ +S + ++ +D+D++K IND LG +G Sbjct: 137 LTKLALYDPLTNVPNRYLFEKRLESIIRMSKKHNQ-SFALLFLDLDRFKNINDTLGHHMG 195 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L +R+ +L+ D +AR G+ F IIL + + + A + +S+ P N+ Sbjct: 196 DMLLKETAQRLNGMLRKQDTIARFGGDEFVIILPNLKHIREAVYMAENIIESLKRPFNVN 255 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706 +E+ ++ SIG + + +++ A+ AMY AK G N + +++ Sbjct: 256 HQEVYISTSIGISVYPYDGTDKETLIRMADRAMYQAKTNGRNQFVLYHDGMNNNGRHLFQ 315 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A + E L Y P + + ++I +EALI+W+H + G IS +F+ +AEE + Sbjct: 316 LETALRKAFDLGEFALYYQPQVDMKTKQIRAVEALIRWNHHEKGFISPGQFIPLAEESGL 375 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I+ +++ + D+ + Q + + INI+ + E +Q I +P Sbjct: 376 ITPISDWIIMQACEDLKQLQWQFPY--VKMSINISPIYFQQIDFLEKLQKTIESVNVNPR 433 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ES +M + E+S L L+ +GIS+ +DDFGT S LSYL P D +K + S Sbjct: 434 SLELELTESAIMPHAEQSVGRLTTLKTMGISIAIDDFGTGFSSLSYLHRFPIDVLKIDQS 493 Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + ++ +AI+++II MA +++ ++A+ + E + L CD++Q +V++PL Sbjct: 494 FIKQLSQYQEDLAIVKAIIMMAHSLQIQVVAEGVETEKQYQILEEQRCDFVQGYYVSNPL 553 Query: 945 GFNSILKLL 953 + + L Sbjct: 554 TIGELYEFL 562 >gi|257482140|ref|ZP_05636181.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1250 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 266/563 (47%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 682 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 740 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 ++ R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 741 ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 798 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 857 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 858 KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 917 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 918 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 977 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 978 QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKQWHQARVRVP-KVSVNISARQFSDGQL 1096 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1097 GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ + Sbjct: 1217 EHDCDEVQGYLFGRPMPASQFEA 1239 Score = 76.1 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 592 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 593 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 650 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + NG+ G+ DI++Q+++ + + A Sbjct: 651 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 694 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 400 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 459 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + +H +D +++ + L LQ R R +N + +R + Sbjct: 460 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 519 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DITEQ + S + A Sbjct: 520 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 560 Score = 37.6 bits (86), Expect = 9.7, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 34/188 (18%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425 A + G LI +L+ + +++ + + R G+G + D+ Sbjct: 226 LAPLIGKCLIGLLLSILPLIALMSLRKRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 285 Query: 426 ----DRVTTTPDIATILGLASG----------------------SMHGPIRNWLPYIHIN 459 +V T D +L + + W P I Sbjct: 286 QLEALQVRTDEDFELLLKSQPASLKRLLQQLRINELNEVALGLLEIEHSEQAWQPLIEGE 345 Query: 460 DRDN---FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R ++ + + RL+ E + A Q + + +R + S D I Sbjct: 346 SRSRPGIGVQVIQAVLAG-LPRLELEICLTRASGQDQHLWLVMR-LPESRSDFDAVILSI 403 Query: 517 NDITEQKK 524 DIT +K+ Sbjct: 404 GDITSRKQ 411 >gi|237746065|ref|ZP_04576545.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229377416|gb|EEO27507.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 895 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 156/576 (27%), Positives = 276/576 (47%), Gaps = 15/576 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +++ ++ + F+ F ++ L S + + D V TI G + Sbjct: 315 LLKELVTSIDFALDNFDRKQQLQLSAQIFTQSNEGLMLLDSACHIVMVNKAFTTITGYSD 374 Query: 443 GSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G R H DRD + + + + G Q E R D F+ + I+ Sbjct: 375 TEALGHNPRILSSGRH--DRDFYENMWNRIDKH--GSWQGEIWNRRKDGTFYPEWLSIQT 430 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 M +S G + YIG+ D+TE+KK+ E + A D LTG+PNR DR + L+ Sbjct: 431 MRDSFGKLTHYIGLFADMTERKKTEEKVQWLAHFDALTGLPNRTLLRDRSNLAISLAQRR 490 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + +M +D+D +K +ND LG GD++L R+ +++ D ++R G+ F ++L Sbjct: 491 -HEPLALMFLDLDGFKNVNDSLGHNTGDELLKQFASRLKSVVREQDTVSRQGGDEFVLVL 549 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + ++ A + A P ++ E+ +TASIG A + + I + +A+ AM Sbjct: 550 PN-TDTGGATSIAEKLLAIAAEPYHIEPHELNLTASIGIAMYPADGIDFDTLSCSADTAM 608 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y K G N+ F M++ D L A+E + L Y PI+ L IVG E Sbjct: 609 YRTKQGGRNNYCFFTTEMQARSARMLELDSALRRALEREQFTLHYQPIMSLKHHIIVGFE 668 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP+ G +S EF+ +AE I I ++L + + W D + I + +N Sbjct: 669 ALLRWEHPQLGPVSPEEFIPVAESNGQIIPIGEWILRSVISQLRKWIDAGHEE-IMVSVN 727 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++ D L + + L+ + SP R+ L +E V M P+ + +++ L++ G+ ++ Sbjct: 728 LSAIQFRDRRLSDMVSTLLKEAQVSPDRLVLELTEGVAMEKPDAAIVVVDSLKERGVKVS 787 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL ++K +GS + + +AI+ +I+ +AKN+ IA+ Sbjct: 788 VDDFGTGYSSLAYLKRFSAHSLKIDGSFIRNIPDDTENMAIVSAIVSLAKNLGIKTIAEG 847 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + E I LT +GC IQ +++ P+ ++ L Sbjct: 848 VETEEHIAFLTEIGCTAIQGHYLSRPMTADAASDFL 883 >gi|297537222|ref|YP_003672991.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297256569|gb|ADI28414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylotenera sp. 301] Length = 1026 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 140/571 (24%), Positives = 268/571 (46%), Gaps = 13/571 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 F + E L + S D + + + + + + G G + Sbjct: 458 EREQFKGKLLESEEISRLVLENSLDAIINMNSDGLVIEWSGAAYKMFGYKREDALGQKLS 517 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L I + DR+ ++ + + + + E +D+ + + + + G+ Sbjct: 518 NL-IIPVRDREAHIKGMNRVIATNQSNMTGRRVEVSALRSDDTEIPVEMSVAKI--ETGN 574 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 ++ + DIT++K+S I A D LT +PNR D L L ++ + V Sbjct: 575 LVFFSAFVRDITDRKESESQIQKLAHFDALTSLPNRILLQDHFKYALSLIKRNNG-KLAV 633 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D +K IND LG ++GD +L+ + +R+ L+ D L+RL G+ F +IL +S Sbjct: 634 IFLDLDHFKDINDTLGHSIGDLLLIEVAKRLQLTLREEDTLSRLGGDEFILILPG-TDSR 692 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A+ A + +A P ++ E+TVT S+G A + + + + A+ AMY AK G Sbjct: 693 GAANVAQKLLSIMAKPYHIDSFELTVTGSVGVALYPNDGTDFEILSQKADTAMYRAKQEG 752 Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N+ F + + + L A+E ++L L Y P + L ++G EAL++W H Sbjct: 753 RNNYRFFTAEMQATSSRNLQLVNALRYALERNQLSLHYQPQVSLHQNCVIGTEALLRWHH 812 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G+IS +EF+ IAE+ +I +I ++L + + W ++ P+ + +NI++ Sbjct: 813 PELGSISPAEFIPIAEDSGLIISIGEWVLRQAVKQAKLWMEE-GHAPLIMAVNISAIQFR 871 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 +L + ++ + +P ++L +E V M +P+ + ++ L ++GI +++DDFGT Sbjct: 872 HPDLPNLVTQILEEIGLAPEYLELELTEGVAMYDPQAAIEMMNNLHELGIRVSIDDFGTG 931 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL +K + S + + AI+ +II M+K++ IA+ + + Sbjct: 932 YSSLSYLKKFKVYKLKIDQSFVRDISTDPEDKAIVSAIISMSKSLGLQTIAEGVETVEQL 991 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GCD +Q + P+ + +E Sbjct: 992 TYLRAQGCDEVQGYFYSKPMPAEQAEEYFRE 1022 >gi|330888757|gb|EGH21418.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. mori str. 301020] Length = 1258 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 266/563 (47%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + + V + G + + L + Sbjct: 690 QRRAEKDLRMAATVFEHSTSAILITNPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 748 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 ++ R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 749 ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 806 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 807 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 865 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 866 KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 925 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 926 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 985 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 986 QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRCG 1045 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1046 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKQWHQARVRVP-KVSVNISARQFSDGQL 1104 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1105 GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1164 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1165 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1224 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ + Sbjct: 1225 EHDCDEVQGYLFGRPMPASQFEA 1247 Score = 76.9 bits (188), Expect = 2e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 541 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 600 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 601 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 658 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + NG+ G+ DI++Q+++ + + A Sbjct: 659 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 702 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 408 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 467 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + +H +D +++ + L LQ R R +N + +R + Sbjct: 468 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 527 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DITEQ + S + A Sbjct: 528 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 568 >gi|330961617|gb|EGH61877.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1508 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + + L + Sbjct: 686 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVRANEAFTRVSGYEVAQVVDQLPSMLT-V 744 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R I+ RG + E R++ + + + + I + + GD+ Y+ Sbjct: 745 EAEQEAHLRYIIRQL--SGRGTWEGEVRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 802 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 803 TDISERKASEDRIHRLAYFDALTHLPNRTLFQDRLYSALQQAERQQ-AWVGLMFLDLDRF 861 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 862 KPINDSLGHAAGDRMLQEMATRLLACVDVNDTVARMGGDEFTLLLQQGSTREEALNRAIH 921 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK G N+ Sbjct: 922 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKECGKNNF 981 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 982 QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1041 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +EF+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1042 LVPPNEFIPVLEELGLVVEVGDWVLTEACRQLKHWHQHKVRVP-KVSVNISARQFSDGQL 1100 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1101 GKRIATILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1160 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1161 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1220 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ Sbjct: 1221 EHNCDEVQGYLFGRPMPPKQFEA 1243 Score = 73.8 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 17/165 (10%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + +ILG + Sbjct: 537 IGIAKDITDQVASSQSLRDSEQRYRMLAESISDVIFSTDNQLRPNYVSPSVESILGYSPD 596 Query: 444 SMHGP--------------IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 + + IH L S RL + F AD Sbjct: 597 WILENGWAGAIATQQQLSGFYALMSRIHK--VLKKPKELASLRSEVTTRL-FLFDCLRAD 653 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + + + +G+ DI++Q+++ + + A Sbjct: 654 GRKIPVELRVVLVWDEHDNFEGILGVGRDISQQRRAEKDLRMAAT 698 Score = 58.4 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 I + + + S + D ++ D++ R + + LG + Sbjct: 404 ILSIGDITSRKQIELSLQDRESFWSDVLRTVPDHLYVQDVLSQRMIYSNHHFGHTLGYSK 463 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + +H D +++ + L LQ R R +N + IR + Sbjct: 464 PELKAMGEFFWEVLLHPEDAKSYQDMRLRQRHYGHNELLQSVLRFRDRENNWRCFDIREQ 523 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DIT+Q + S + A Sbjct: 524 ALAWDAEHRVTRIIGIAKDITDQVASSQSLRDSEQRYRMLA 564 >gi|312963150|ref|ZP_07777635.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] gi|311282661|gb|EFQ61257.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] Length = 1283 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 148/563 (26%), Positives = 265/563 (47%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G A + + N L + Sbjct: 715 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSDVLDQLPNMLT-V 773 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R +L ++ + E ++ + + + + I + + GD+ Y+ Sbjct: 774 DEQQEAHLRYVLKQL--HQHSTWEGEVWLKRRNGEHYPAWVGITAVFDDEGDLASYVCFF 831 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL T L + + +M +D+D++ Sbjct: 832 SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQAAERQKSW-VVLMFLDLDRF 890 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L N + Sbjct: 891 KPINDSLGHAAGDRMLKEMATRLLGCVAEDDTVARMGGDEFTLLLQPRVNREMALNRAIH 950 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 951 VAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1010 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP+ G Sbjct: 1011 QFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1070 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + +++ R + +W P + +NI+++ D +L Sbjct: 1071 LVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQNKVRVP-KVSVNISARQFSDGQL 1129 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ T P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1130 GTRIATILKDTGLPPACLELELTESILMREVNEALHILDSLKNLGLSIAVDDFGTGYSSL 1189 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + + L Sbjct: 1190 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1249 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ + Sbjct: 1250 EHGCDEVQGYLFGRPMPAHRFEA 1272 Score = 66.1 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 55/164 (33%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + S+ + +R + D++ D +P + +LG Sbjct: 566 IGVAKDITDQIEASESLRDSEQRYRMLAESISDVICSTDSRLALNYVSPSVNAVLGYDVD 625 Query: 444 SMHGPIRNWLPYI-HINDR-------DNFRTILDSFVGYRRGRLQYEFRV-----RAADN 490 + W I + + L R + + ++ AD Sbjct: 626 WVFKN--GWQSIIANPKQLAGIYSLMERVSRALGDVQALNTLRDEVQTQLFLFDCLRADG 683 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G +G+ DI++Q+++ + + A Sbjct: 684 RKVPIELRLVLVWDEHGAFEGILGVGRDISQQRRAEKDLRMAAT 727 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 3/111 (2%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 I + + + + LG + + +H D +++ + +L Sbjct: 473 ISQRMIFSNHHLGHTLGYTKAELQQMGEYFWEILLHPEDAEHYHDLRQQQRQAGYCAQLH 532 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + R R +N + IR + + + + + R IG+A DIT+Q ++ E + Sbjct: 533 CQLRFRHRNNAWRRFDIREQALARDKSSQVTRIIGVAKDITDQIEASESLR 583 >gi|83312428|ref|YP_422692.1| hypothetical protein amb3329 [Magnetospirillum magneticum AMB-1] gi|82947269|dbj|BAE52133.1| Hypothetical 1041 kDa protein in hypE 3'region [Magnetospirillum magneticum AMB-1] Length = 1510 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 153/573 (26%), Positives = 264/573 (46%), Gaps = 20/573 (3%) Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457 E+ LA +G+ + D + +T I G + + G +L H Sbjct: 945 HAEEQLRLAAKVFDRAGEAITITDSSGNIITVNDSFCRITGYSHQEVIGKNPRFLQSGKH 1004 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +D + + S + G Q E R + + + + + + + NG ++ Y+ I + Sbjct: 1005 --GKDFYDAMWRSLIEQ--GCWQGEIFNRRKNGEIYPEWLTVNSVRDENGSVVNYVAIFS 1060 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI+ K S I A D LTGIPNR +DRL + + + V+ ID+D +K Sbjct: 1061 DISAIKSSQRRIEFLATHDELTGIPNRSLLMDRLKHAVAQAKR-QKTKLAVLFIDLDNFK 1119 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG VGD +L T R+ ++ D LARL G+ F +L + K+ A + Sbjct: 1120 VINDSLGHDVGDQLLKQATERLKHCVRDSDTLARLGGDEFVAVLTDV-SLEKVNSVAARI 1178 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + ++ ++ + V+ASIG + + S +LK+A+ AMY AK RG N + F Sbjct: 1179 VDFLGASFSINDKSLFVSASIGISVFPDDGQDSLTLLKHADTAMYRAKERGRNQYQFFAD 1238 Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 R+ ++ L LA+E + Y P + + E+VG EAL++W P G +S + Sbjct: 1239 EMKVIALQRLTLETGLRLALETKSFRMCYQPQVDIHTGEVVGAEALLRWRDPTLGEVSPA 1298 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ IAE +I AI + + I WR++ P I IN+++ L D + Sbjct: 1299 HFIPIAESCGLIGAIGETVFTMVLEQIAYWREKGLTVP-RIAINVSAHQLRDAGFAAKVG 1357 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + + + S I + +ES +M + + +L +G+ +++DDFGT S LSYL Sbjct: 1358 SWLDSSGISSELIGIELTESALMERIDMVKEMLTSFDGMGMKVSIDDFGTGYSSLSYLKK 1417 Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P +K + S + G +I ++II M++ + ++A+ + E + L GCD Sbjct: 1418 LPIHELKIDRSFVDGIALERDDRSIAKAIIDMSRALGMRVVAEGVESEEQLGVLKEEGCD 1477 Query: 934 YIQDSHVASPLGFNSILKLLK-----ERFPLVK 961 +Q PL + K+++ R PL + Sbjct: 1478 MVQGYLFHRPLSPEAFAKVIETGGKSSRKPLKR 1510 Score = 53.0 bits (126), Expect = 3e-04, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 4/142 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + I ER + S V D + GL++ + G Sbjct: 817 DLVEAQEQIRESQERLLSIMNHSTSAVSLKDAAGRYEFINMRFEELFGLSAEEVIGKTDQ 876 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L D D V + +Q+ + W+ P+ +SNG + Sbjct: 877 QLFSR---DIAQLLRSRDLEVMGQLSAIQHLEEMVFPT-SKVWLDSVRFPIFDSNGVVRA 932 Query: 512 YIGIANDITEQKKSLEGILCNA 533 + D+T + + E + A Sbjct: 933 VCSQSTDVTMKHHAEEQLRLAA 954 >gi|311693697|gb|ADP96570.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [marine bacterium HP15] Length = 724 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 148/662 (22%), Positives = 286/662 (43%), Gaps = 27/662 (4%) Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369 +A + L + + + + + V+++ +R D I+ Sbjct: 62 LALLDLRMPEVTGFDVMAHLAIGQPDCGVIVVSGESSF-----SAVSRALRRGALDYIRK 116 Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 +L + + A + + V S DIV+ D Sbjct: 117 PFDPEELLATVESVIGKKSLLEAHEHIQMRLEKSEALHRYIVNSSPDIVFMLDQDGHFCF 176 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 + ++LG + G ++ + D L E R++ Sbjct: 177 VNSKVESLLGYKPAELCGQ--HFRHILDDRDVTRGTLALKGPNITADNPRTLEVRLKTRG 234 Query: 490 NQF--HWMIIRIRPMS------------NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 ++ I P+ +G+ Y G A D+TE+K++ I A+ Sbjct: 235 SRRATRHFEITAFPIDPQTWPHSGNTQGGGSGNGATYYGTARDVTERKEAEAFINFQAYH 294 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D LT +PNR F DRL + + + VM +D+D++K IND LG A+GD +L ++ Sbjct: 295 DLLTRLPNRALFKDRLELAITHANR-GGQKLAVMFLDLDRFKVINDTLGHAMGDRLLQAV 353 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 T R+ + L+ D L+R G+ F ++L S +N A + ++ P L + E+ V Sbjct: 354 THRLEKCLRKGDTLSRFGGDEFTLLLPSIHNHEDARQIAKKLIDALRAPFQLGDHEVFVG 413 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCL 713 SIG A + + T ++++NA++AMYH K +G + + S ++R+ ++ DL Sbjct: 414 VSIGIAIFPEAGETMDQLIQNADIAMYHVKGKGKDGYRFYSDSMSIDTANRLNLERDLRQ 473 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+E EL + Y P + +VGLEAL++W HP+ G + +F+ +AEE +I ++ Sbjct: 474 ALERDELRVFYQPQVCSTTNRVVGLEALVRWQHPERGLLYPRDFLPLAEETKLIGQLSER 533 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +L++ +D+ W + + + +N++ + E + + + +++ + Sbjct: 534 VLDQACQDVGRWIQE-GHTHLRLAVNLSPIQVEHPRFVETLMQQVKAHNFPAGNLEIEIT 592 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891 E+V+M + E+ L L +G+ + +DDFGT S L+YL +P T+K + S + Sbjct: 593 ENVIMNDLEQISQKLRELAALGVRIAIDDFGTGYSSLNYLHRLPIHTLKVDQSFVKAIRS 652 Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + I+ +I+ MA ++ I+A+ + + + L +GC +Q I + Sbjct: 653 GDDGACIVNAIVAMAHGLKLEIVAEGVETDEQLDYLRSLGCHQVQGFFYGPARPAAEISR 712 Query: 952 LL 953 L Sbjct: 713 TL 714 >gi|312110709|ref|YP_003989025.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] gi|311215810|gb|ADP74414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] Length = 574 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 141/549 (25%), Positives = 274/549 (49%), Gaps = 12/549 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468 + S + D + P + G ++ + G R +H D+ + + Sbjct: 21 ILEYSSESTIVTDAQNRILFVNPAFEIVTGYSADEVIGKNPRILQSGMH--DKSFYEKMW 78 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ + G + E + D + + + I + + G++ Y+ I +DITE K+++E Sbjct: 79 NAL--NQYGVWKGEIWNKRKDGELYLEWLTISAVKDQQGNVTNYVAIFSDITEHKRNMEQ 136 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LT +PNR F RL +I+ +S + ++ +D+D++K IND LG +G Sbjct: 137 LTKLALYDPLTNVPNRYLFEKRLESIIRMSKKHNQ-SFALLFLDLDRFKNINDTLGHHMG 195 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L +R+ +L+ D +AR G+ F IIL + + + A + +S+ P N+ Sbjct: 196 DMLLKETAQRLNGMLRKQDTIARFGGDEFVIILPNLKHIREAVYMAENIIESLKRPFNVN 255 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706 +E+ ++ SIG + + +++ A+ AMY AK G N + +++ Sbjct: 256 HQEVYISTSIGISVYPYDGTDKETLIRMADRAMYQAKTNGRNQFVLYHDGMNNNGRHLFQ 315 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A + E L Y P + + ++I +EALI+W+H + G IS +F+ +AEE + Sbjct: 316 LETALRKAFDLGEFALYYQPQVDMKTKQIRAVEALIRWNHHEKGVISPGQFIPLAEESGL 375 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I+ +++ + D+ + Q + + INI+ + E +Q I +P Sbjct: 376 ITPISDWIIMQACEDLKQLQWQFPY--VKMSINISPIYFQQIDFLEKLQKTIESVNVNPR 433 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ES +M + ++S L L+ +GIS+ +DDFGT S LSYL P D +K + S Sbjct: 434 SLELELTESAIMPHADQSVGRLTTLKTMGISIAIDDFGTGFSSLSYLHRFPIDVLKIDQS 493 Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + ++ +AI+++II MA +++ ++A+ + E + L CD++Q +V++PL Sbjct: 494 FIKQLSQYQEDLAIVKAIIMMAHSLQIQVVAEGVETEKQYQILEEQRCDFVQGYYVSNPL 553 Query: 945 GFNSILKLL 953 + + L Sbjct: 554 TIGELYEFL 562 >gi|82701336|ref|YP_410902.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC 25196] gi|82409401|gb|ABB73510.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Nitrosospira multiformis ATCC 25196] Length = 1054 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 147/587 (25%), Positives = 262/587 (44%), Gaps = 19/587 (3%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + + F I + Q +Q+ + + D + + + + Sbjct: 470 EGLTVYFRDITERKESEQARQEAHVRIRQQASLLDKATDAIIVFGMDNCIEFWNQGAERL 529 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G S + G L ++ F + + G + E R D + Sbjct: 530 YGWTSEEVMGREVEMLY----DNVAVFDEANRALLS--SGEWRGELAQRRRDQSMLNVEA 583 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + N +G+ I DIT++K + IL A D+LTG+PNR+ LDRL L + Sbjct: 584 HWTLVRNDDGEPQAIFAINTDITQRKSAENEILHLALYDSLTGLPNRRLLLDRLGHALAV 643 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 SA + + ++ ID+D +K +ND LG +GD +L + R+ ++ D +ARL G+ F Sbjct: 644 SARNQRM-GALLFIDLDNFKLLNDTLGHDMGDLLLRQVAPRLSSCVRESDTVARLGGDEF 702 Query: 618 GIILISENNSL------KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 +IL+ + +I+ +R + P NL +T SIG A + T++ Sbjct: 703 VVILMGDFGEDHDEALTQISTICERIRSAFIQPFNLDPYIHHITPSIGIALFNDQSQTTN 762 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 E+LK A+LAMY AK G N + F + ++ +L + E +E L Y + Sbjct: 763 ELLKRADLAMYQAKASGRNAMRFFDPDMQAAMNARAILESELYKSWERNEFILHYQLQVD 822 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 I+G EAL++W HP+ G + SEF+ AEE +I + ++LE + SW Q Sbjct: 823 --SRGIIGAEALVRWQHPRRGLLPPSEFIPQAEETGLILPLGEWVLETACNQLASWALQP 880 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 + + +N++S + E + +++ +T +P R+KL +ES+++ + + + + Sbjct: 881 ETVQLNLSVNVSSLQFCQPDFVEQVISILDRTGANPQRLKLELTESILVHDMDDTIAKMM 940 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907 L+ G+ LDDFG S L YL +P D VK + S + + I+R+I+ +AK Sbjct: 941 TLKARGVGFALDDFGIGYSSLYYLKRLPLDWVKIDRSFVRDVLTDNNDATIVRTILLLAK 1000 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 ++ +IA+ + L GC Q + PL + ++ Sbjct: 1001 SMGLAVIAEGVETGAQKDFLASHGCTAYQGYLFSRPLPLEQFERFVQ 1047 Score = 44.6 bits (104), Expect = 0.098, Method: Composition-based stats. Identities = 20/190 (10%), Positives = 50/190 (26%), Gaps = 17/190 (8%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 +L+ + + M + + + ++ + ++ + + Sbjct: 321 LLVLLGGFVVSMLTAMV---SFVLSGNKEKAAALG-HVNKKLLLAMEEQQATTRELSNAK 376 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 R + D + D + +L + G + W + Sbjct: 377 LRTERILESITDAFYTLDREWRFTYVNKEAENLLQRNREDLLGRVC-WEEFKETAGTTFD 435 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R + + R + + W + P + G + DITE+K+ Sbjct: 436 REYHRALMENRTVTFEEFYVPLDE-----WFEVHAYP--SEEGLTVY----FRDITERKE 484 Query: 525 SLEGILCNAF 534 E A Sbjct: 485 -SEQARQEAH 493 >gi|283852651|ref|ZP_06369917.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio sp. FW1012B] gi|283571942|gb|EFC19936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio sp. FW1012B] Length = 827 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 149/579 (25%), Positives = 276/579 (47%), Gaps = 8/579 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + + + + S + D+ R+ V + G + Sbjct: 253 GTVVDITDRKRAEAALATQRAYFTQLFANSPQAIALIDMHRNIVDANKAFEALFGYRTAD 312 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G +I + + V + ++ R R D + + + P+ Sbjct: 313 IQG--FGMRAFIVPEHLLSECENMRCAVLAGKPVVRETVR-RHCDGRLIPVSMIGFPIEI 369 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + G+ + I DI+E+K E I AF D LTG+PNR F DRL L + + Sbjct: 370 A-GETQGIVYIYQDISERKAFEEQITHQAFHDALTGLPNRSLFADRLERALTRARRRGDS 428 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V++ID++K+K +ND LG GD +LV + RR+ ++ D +ARL G+ F +IL Sbjct: 429 QYAVLMIDLNKFKGVNDTLGHQAGDQLLVEVARRLSGCVRSMDTVARLGGDEFAVILEEF 488 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ + + P L + +T ASIG T + ++L++A++AMY A Sbjct: 489 KTKKEVMTVVERIGVGLGKPFVLCGKTVTPEASIGIVLHTRDYAAADDLLRDADIAMYRA 548 Query: 685 KHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 K +G + R + + ++ DL A+E EL L Y PI+ + D IVG EAL++ Sbjct: 549 KEQGRASMIFDRKMHQEILEAISLETDLRQALEAGELLLHYQPIVDVKDSRIVGFEALVR 608 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIAS 802 WDHP G + +F+ +AEE +I + F+++ R + +W+ + + + +N++ Sbjct: 609 WDHPDRGLVPPGQFIPLAEETGLILPLGRFVIDEACRQLRAWQLEMPEAADLSVSVNVSC 668 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + + + L E + +++ T P+ +KL +ESV+M + E + L RL+ +G+ + +DD Sbjct: 669 RQFVKDGLVEHVAQVLAATGLPPACLKLEITESVLMHDAEHTARELNRLKALGVKIAIDD 728 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +P D +K + S + G + I++SII +A+++ T+IA+ + Sbjct: 729 FGTGYSSLSYLRQLPIDHLKIDRSFISGQGCDGESQEIVKSIISLARSLGLTVIAEGVEC 788 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + L CD Q + P+ + +L+++ + Sbjct: 789 PDQLDRLRLADCDKAQGFMFSRPVEATAAGRLIRQHPAV 827 Score = 80.8 bits (198), Expect = 1e-12, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 77/244 (31%), Gaps = 37/244 (15%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLG 413 W A + + VG L I ++ +A+ ++ D ER Sbjct: 97 WAAGEGDAADVRVSQFPVGMLGDRPIT---CMLFRDIASRLLAEDRLRDAERKYRSIFEN 153 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH--INDRDNFRTILDS 470 + + ++ + +A I G + M R+ ++ RD+F L + Sbjct: 154 AVEGIFQTTPAGRYLEVNRTLARIYGFESVAEMREFFRDIRNQLYVDPRRRDDFVRELAA 213 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 R +E +R D W+ R + ++G Y G DIT++K++ Sbjct: 214 HDQVR----DFESEIRKKDGTVIWISENARVVRGADGLPAYYEGTVVDITDRKRAEA--- 266 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID-----IDKYKKINDVLGI 585 A Q R F N + +ID +D K + G Sbjct: 267 ALATQ--------RAYFTQLFA----------NSPQAIALIDMHRNIVDANKAFEALFGY 308 Query: 586 AVGD 589 D Sbjct: 309 RTAD 312 >gi|192360999|ref|YP_001981756.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] gi|190687164|gb|ACE84842.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] Length = 772 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 137/574 (23%), Positives = 265/574 (46%), Gaps = 16/574 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + Q +++ + + S ++ D+ + V + + + G Sbjct: 179 EQSERHRLAEQALWASETYLNAILHYSPALISVKDLDGNVVLASDHFKHMADIDESGFVG 238 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + + D +D + + E + D H ++ P+ G Sbjct: 239 KN---VFDVFPRDIAQSMWDIDIATKTNQQTYEVELDLMHKDGSLHTYLMVKFPLRGKEG 295 Query: 508 DILRYIGIANDITEQKKS-------LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + I DI+E+K + + AF D LT +PNR F DR+ L + Sbjct: 296 KVFGVCTIGTDISERKLAENALREQQSRLNYMAFHDALTSLPNRSLFYDRIYHGLARARR 355 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 N R +M++DID++K +ND LG GD +L ++ R+ E ++ D +ARL G+ F ++ Sbjct: 356 S-NSRVALMLLDIDRFKIVNDSLGHDAGDILLKAIAMRLTEGVRDMDTVARLGGDEFVVV 414 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L ++ + A + +++ P+++ I+ T SIG + + + E+LKNA++A Sbjct: 415 LEGIHDVDDVIFVANKLLATLSRPLDISGHSISATVSIGVSIFPEDGADTDELLKNADIA 474 Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G N+ + + +++ + ++++ DL A+E ++L L Y P I L ++ G+ Sbjct: 475 MYKAKEAGKNNCQFYTKGMNATAVNYLLLENDLRRAIEQNQLALYYQPQIDLKTGDMTGV 534 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP+ G +S + F+ +AEE +I I ++L + W D + + Sbjct: 535 EALVRWQHPERGLVSPAHFIPLAEETGLIVPIGEWVLREACKQKKIWLDTGKNVG-KVAV 593 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ + ++A++ +T ++L +ES M + + L +L ++G L Sbjct: 594 NLSPRQFRQKNFPGKVEAILQETGLEAKYLELEITESCAMEHAGETINQLNQLNQMGTFL 653 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 +DDFGT S L+YL P +K + S + + AI ++II +A N++ ++A+ Sbjct: 654 AIDDFGTGYSSLAYLQRFPIQKLKIDRSFIHDIHDDANDAAIAKTIIGLAHNMQLRVVAE 713 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + E + L GCD +Q A P+ + Sbjct: 714 GVETESQAEWLRAKGCDQVQGFLYAKPMTAKQLE 747 >gi|242277880|ref|YP_002990009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio salexigens DSM 2638] gi|242120774|gb|ACS78470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio salexigens DSM 2638] Length = 716 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 146/575 (25%), Positives = 263/575 (45%), Gaps = 16/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 A + E+ LA S + V D + I G + + Sbjct: 143 RKAKDQLKITVDQQTEQLKLATAVFKHSSEGVTITDSNNNIRYINDAFTHITGYSEEEVI 202 Query: 447 GPIRNWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G + L H + + + G + E R + + I I+ +++ Sbjct: 203 GQNPSILKSNRHKPSFYKGVWKSIKT-----NGMWEGEIWNRRKNGEVFPEWISIKAITD 257 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G+++ YI + DI+E K S I A+ D LTG+PNR +DR+ + S+ D Sbjct: 258 VKGEVVNYIAVFRDISEAKASQRKIQHQAYHDALTGLPNRTLLIDRIRKAIA-SSNDRKS 316 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 ++ ID+D +K IND LG +GD VL RI E + D ++R+ G+ F I+L Sbjct: 317 CIALLFIDLDNFKNINDSLGYVIGDSVLQQAAARIREFIDEKDTVSRIGGDEFVIMLKDL 376 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A A + A + + + T+T SIG A + T +++NA+ AM A Sbjct: 377 QDKHDAAVMADTIINLFAQALTVESHQFTITPSIGIALYPEDGKTPYSLVRNADTAMNKA 436 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F S ++ L ++ + Y P + L D IVG+EALI Sbjct: 437 KQEGRNRYHLFTPGLTESALRRISMENQLRQTASDNGFTVYYQPKVNLHDNTIVGMEALI 496 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W P IS +EF+ +AEE +I I +LE D + + + + +N++ Sbjct: 497 RWIQPDGTIISPAEFIPLAEETGLIVPIGEQVLEAACLDTVELNQRFG-TNLKVSVNLSL 555 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + +L + + +I+ T PS ++L +ES VM + E+++ +L ++ K+GI+L++DD Sbjct: 556 RQFKQEQLMKNIMDIIAMTAICPSCLELEITESTVMDDIEQTKTILEKMDKLGITLSIDD 615 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LS+L +P T+K + S + G + ++++I+ +A++ + + +A+ I Sbjct: 616 FGTGYSSLSHLKNMPMHTLKIDQSFVAGLPHNKSDQKLVKAIMSLARSFDLSTVAEGIET 675 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +GC+ +Q + + P+ L++ Sbjct: 676 PEQYNYMRELGCEVMQGYYYSPPVPLEEFAALIEA 710 Score = 76.5 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 10/179 (5%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + + D+ D + P GL G + +IH D++ + Sbjct: 26 IENTDDLFTQVDTDGRFLYVNPSAQKYFGLPPEKCVG--LSIFDFIHPEDKETTAQDFNK 83 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + Y R + F++M+ I + +S IL + I DIT K++ E + Sbjct: 84 WQKDPSTNFSYINRQMHLNGSFYYMLWTITAVKDSEQKILWFNCIGRDITSHKETEEELR 143 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI-DKYKKINDVLGIAVG 588 +D L + + + + +A + V + D + + IND G Sbjct: 144 KA--KDQL-----KITVDQQTEQLKLATAVFKHSSEGVTITDSNNNIRYINDAFTHITG 195 >gi|104780040|ref|YP_606538.1| sensory box protein [Pseudomonas entomophila L48] gi|95109027|emb|CAK13723.1| putative sensory box protein(GGDEF domain/EAL domain) [Pseudomonas entomophila L48] Length = 1276 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 151/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G A + + L Sbjct: 708 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVAEVLDQLPGMLTVE 767 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H D + +L +RG + E ++ + + + + I + + GD+ Y+ Sbjct: 768 HQQD-AHLGYVLKQL--NQRGSWEGEVFLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 824 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+E+K S + I A+ D LT +PNR F DRL T L + +M +D+D++ Sbjct: 825 TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYTALQQAER-QKAWVVLMFLDLDRF 883 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 884 KPINDSLGHAAGDRMLKDMAERLLACVDNDDTVARMGGDEFTLLLQPKATRELALNRAIH 943 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 944 VAEHILDSLVTPFVLENREFFVTASIGIALSPQDGGELSQLMKNADTAMYHAKERGKNNF 1003 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP G Sbjct: 1004 QFYQADMNASALERLELESDLRHALEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + ++L R + +W P + +NI+++ D +L Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREACRQLKAWHKDKVRVP-KVSVNISARQFSDGQL 1122 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ +T P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1123 GTRIATILEETGLPPACLELELTESILMREVNEAMQILDSLKNLGLSIAVDDFGTGYSSL 1182 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + ++ L Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ N Sbjct: 1243 EHGCDEVQGYLFGRPMPANQFEA 1265 Score = 69.2 bits (168), Expect = 4e-09, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 4/151 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D+ R+ + + LG Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVQSQRMIFSNRHLGQTLGYDR 485 Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500 + + + H D ++R + G L + R R D + IR + Sbjct: 486 AELAQMGERFWELLLHPEDAAHYRALRQQQQDTCHGQSLHCQLRFRHRDGGWRCYDIREQ 545 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + S+G + R IG+ D+T Q ++ E + Sbjct: 546 VLTRASDGQVTRIIGVGKDVTVQIEASESLR 576 Score = 68.1 bits (165), Expect = 7e-09, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 52/154 (33%), Gaps = 15/154 (9%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 S+ + +R + D+++ D +P + +LG + + W Sbjct: 569 IEASESLRDSEQRYRMLAESISDVIFSTDNQLRLDYVSPSVQAVLGYQADWIFAN--GWQ 626 Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQYE------------FRVRAADNQFHWMIIRIR 500 I + +++ + Q F AD + + +R+ Sbjct: 627 SIIANPAQLTGVYGLIERVSKAQGDTEQLAQLRATLPTQLFLFDCLRADGRKIPIELRLV 686 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + + +G+ DI++Q+++ + + A Sbjct: 687 LVWDEHERFEGVLGVGRDISQQRRAEKDLRMAAT 720 >gi|302062495|ref|ZP_07254036.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato K40] Length = 1254 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 148/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 686 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 744 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 745 ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 802 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 803 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 861 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 862 KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 921 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 922 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 981 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 982 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1041 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1042 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1100 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1101 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1160 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1161 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1220 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ Sbjct: 1221 EHGCDEVQGYLFGRPMPPKQFEA 1243 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 537 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 596 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 597 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 654 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G+ G+ DI++Q+++ + + A Sbjct: 655 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 698 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 + + + + LG + + +H +D +++ + L LQ Sbjct: 444 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 503 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532 R R +N + +R + + ++ + R IGIA DITEQ + S + Sbjct: 504 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 563 Query: 533 A 533 A Sbjct: 564 A 564 >gi|284050110|ref|ZP_06380320.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Arthrospira platensis str. Paraca] Length = 1091 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 148/561 (26%), Positives = 253/561 (45%), Gaps = 15/561 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP---YIHI 458 + S A S + D D P I G + + G L Sbjct: 537 DQLKMFSRACDQSPVSIVITDSEGDIQYVNPKFEEITGYKAAEVMGQNPRILKSGYTTEP 596 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + ++ EF + + + W I PM + G I +I + D Sbjct: 597 E----YDVLWKQITSGKQ--WSGEFHNKRKNGELFWEHASICPMRDEEGYITHFIAVKED 650 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT+QK + E + A D LT +PNR +RL + + + + VM ID+D +K Sbjct: 651 ITQQKHNEEILAHQANYDALTDLPNRTLIFERLRQAIIQAQVN-HSNVAVMFIDLDHFKN 709 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L R+ L+ D + RL G+ F +I+ + ++ ++ A + Sbjct: 710 INDTLGHELGDFLLKEAGMRLKGCLRTTDTVGRLGGDEFLVIIPNLDDLIQAEYIATQVL 769 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P NL E ++ASIG AS+ +S +++NA+ MY AK G N F + Sbjct: 770 GVLGEPFNLCGEEAFISASIGIASYPQDGNNASTLVRNADTGMYAAKQEGRNVFAFFTQN 829 Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + I + L A+ EL +VY P I L +IVG EAL++W +P+ GNI + Sbjct: 830 MNDEAQSRIIIENHLRHAINRDELSVVYQPFINLATAQIVGAEALMRWYNPELGNIRPDQ 889 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE +I + ++L + +++ W Q +++ +N++ + L L + Sbjct: 890 FIAIAEESRLIVDLGEWILSQACQEVAIWHQQ-GNSGLWVAVNMSPRQLRTPNLVNVIIE 948 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 I+ S ++L +E ++ + L+ +L + I L +DDFGT S LSYL Sbjct: 949 AIANNGLSSDCLELEITERSLVAEVPGVQSLIKQLHSLKIRLAIDDFGTGYSSLSYLKRF 1008 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PF +K + S ++ + IA+++++I MA + ++A+ I + L GCDY Sbjct: 1009 PFSVLKIDKSFISDLPDDQDAIALVKTMITMAHGLGLVVVAEGIETSAQLDFLCNQGCDY 1068 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + PL L++ Sbjct: 1069 GQGYLFSKPLPPAEFRAYLQK 1089 Score = 61.1 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W ++ + + + ILG ++ ++L +I+I+D ++ + ++ Sbjct: 316 GSWCLNMNTGEMIISDQLYHILGENPQNVSINFEDFLNHIYIDDLYSWVQTYSQSLFTQQ 375 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + +R+ D+ HW+ + P+S+ + I I +I + + I A Sbjct: 376 N-YRLNYRIIQPDSSMHWVSQQSTPVSDRHNKITHITSIIQEIDSHQIANPSITAEA 431 Score = 51.1 bits (121), Expect = 9e-04, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 23/144 (15%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q + + R + S + + D + P + G + + G Sbjct: 421 QIANPSITAEAALRESEARLRTIISTSTNGLVVVDCQGRALFINPAAEALFGRQARELEG 480 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + + E + D + + +R+ +S Sbjct: 481 ---------------------EMIGIPLVTKESTELEIFRHDGKLKIVRMRVVEISWE-- 517 Query: 508 DILRYIGIANDITEQKKSLEGILC 531 Y+ DIT+ KK+ + + Sbjct: 518 QETAYLASLTDITDFKKTEDQLKM 541 >gi|24371741|ref|NP_715783.1| sensory box protein [Shewanella oneidensis MR-1] gi|24345524|gb|AAN53228.1|AE015464_10 sensory box protein [Shewanella oneidensis MR-1] Length = 1077 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 159/673 (23%), Positives = 302/673 (44%), Gaps = 28/673 (4%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 L ++ + + + +T I + R+ + Sbjct: 410 ITLSMARQSDIQQHHALMLLGIYLLSALFTATITLWLGRKIIRSFMFKITQ--------- 460 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413 I + P L + + + + + Q R + Sbjct: 461 ----IANDMQQMAADPQLNIHIDVSGSDELARMSRAMNRMLSERQKANQALSRAAAVFNY 516 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFV 472 S + + D P + I G + + G + L H +F T + + Sbjct: 517 SAEGIMVTDADNHIELVNPAFSQITGYSLEDVKGRSPSMLSSKRHP---SHFYTAMWEAL 573 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + + E + D Q + + I + N G+I+++IG+ DI+++K+ + + Sbjct: 574 -QKDSKWEGEIWNKRKDGQVYPEYLAITVVRNERGEIIQHIGLFMDISKRKQYEQDLWYQ 632 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D LTG+PNR+ F +RL + L+ D + +++ID+D++K INDV G A GD +L Sbjct: 633 AHFDTLTGLPNRKLFNERLQHEIQLAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLL 691 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + +R+ + D++AR+ G+ F +IL N I A + ++++ P NL EREI Sbjct: 692 QDVAKRLENIAGKNDLIARIGGDEFVLILPRVTNEFAIEHMASRIIETLSTPFNLNEREI 751 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKED 710 ++AS G + + S + +N E+AMY AK G N+ + F ++ R+ +++ Sbjct: 752 QISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQR 811 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L AV E L Y PI+ + ++ +EALI+W P G I +F+ IAEE +I+ + Sbjct: 812 LRRAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQDPDLGLIPPDQFIGIAEETGLIEPM 871 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSR 827 ++L + D+ W+ + + IN++S+ ++ + +Q ++ +P Sbjct: 872 GEWVLNQAMHDLRQWQQLGLQ--LNVAINVSSRQCVNARGMGFDQVLQECFNRHHINPRN 929 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 + + +ES++MG+ L +R++G + +DDFGT S LSYL P +K + S Sbjct: 930 VHIEITESMLMGDASHCLSTLEAIRRLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSF 989 Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + S ++++I+ M +++E ++A+ I E L +GC Y Q ++ PL Sbjct: 990 VENALSNNSNTNLVKAIVMMGQSLEMELVAEGIETEAQWNLLRDLGCHYAQGYLISKPLP 1049 Query: 946 FNSILKLLKERFP 958 F +I LL + P Sbjct: 1050 FAAITPLLSQTLP 1062 >gi|120555138|ref|YP_959489.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] gi|120324987|gb|ABM19302.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] Length = 725 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 144/584 (24%), Positives = 266/584 (45%), Gaps = 22/584 (3%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + A + V S DIV+ D + ++LG + G Sbjct: 137 IRAHEMVQSRLEKSEALHRYIVNSSPDIVFMLDETGHICFINNKVESLLGYQPSELCGQ- 195 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ--FHWMIIRIRPMS---- 503 ++ + D L E R++ ++ I P+ Sbjct: 196 -HFRHILDDRDVARGTYALQGPNISADNPRVLEVRLKTRGSRKATRHFEITAFPVDPQTW 254 Query: 504 --------NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 G RY GIA D+TE+K++ I A+ D LT +PNR F DRL + Sbjct: 255 PQTGKTQGGCTGQPARYYGIARDVTERKEAEAFINFQAYHDLLTRLPNRALFKDRLELAI 314 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + + VM +D+D++K +ND LG A+GD +L ++T R+ + L+ D L+R G+ Sbjct: 315 THARRSQQ-KLAVMFLDLDRFKVVNDTLGHAMGDRLLQAVTHRLEKCLRRGDTLSRFGGD 373 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F ++L S + + A + ++ P L + E+ V SIG + + + T +++ Sbjct: 374 EFTLLLPSIHGHDDARNIARKLIHALKAPFQLGDHEVFVGVSIGISVFPEAGETMDLLIQ 433 Query: 676 NAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 NA++AMYH K RG + + S ++R+ ++ DL LA+E +EL + Y P + Sbjct: 434 NADIAMYHVKARGKDGYRFYSDSMSINTANRLSLERDLRLALERNELRVFYQPQVCSRSN 493 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +VGLEAL++W HP+ G + +F+ +AEE ++ ++ ++++ RD+ W Sbjct: 494 RVVGLEALVRWQHPERGLLYPGDFLPLAEETRLVGKLSEQVIDQACRDVGRWISS-GHSD 552 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++ + E + ++ + +++ +E+V+M + E+ L L Sbjct: 553 LRLAVNLSPSQVEHPRFVETLMNRVAAHNFPADNLEIEITENVIMNDLEQISRKLKELAA 612 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 G+ + +DDFGT S L+YL +P T+K + S + E I+ +II MA ++ Sbjct: 613 TGVRIAIDDFGTGYSSLNYLHRLPIHTLKVDQSFVKAIRSGEDGACIVNAIIAMAHGLKL 672 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+A+ + + + L +GC +Q I +LL + Sbjct: 673 EIVAEGVETDDQLAYLKSLGCHQVQGFFYGPARPAADITRLLAK 716 >gi|212639188|ref|YP_002315708.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus WK1] gi|212560668|gb|ACJ33723.1| Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) [Anoxybacillus flavithermus WK1] Length = 594 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 143/550 (26%), Positives = 273/550 (49%), Gaps = 11/550 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTIL 468 + + + + D + P T+ G + G +H DR + + Sbjct: 44 IIQEADEGIIVTDSEGHILLANPAFETVTGYTQEEVLGKKPNILRSGLH--DRKFYENMW 101 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ + G + E + + + + I+ + + G+ Y+ I +D+T+ K+++E Sbjct: 102 ETIRDH--GVWKGEIWNKRKNGELFVEWLTIKAVYDVAGNPTHYVAIFSDVTQHKRTMEQ 159 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + + D LT +PNRQ F RL +LD + + + ++ +D+D++K IND LG G Sbjct: 160 LARLSNYDLLTNVPNRQLFTKRLQHLLDTARRYNQ-QLAILFLDLDRFKYINDELGHYSG 218 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L + R+ +LL+ D LAR+ G+ F +IL + + A + +S+ P L Sbjct: 219 DILLQKVANRLKKLLRTKDTLARIGGDEFVVILPKLKDIQEAVSIAEQIIESLQAPFLLH 278 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-SFRSDRVMI 707 ++I ++ASIG + + + +L+ A+ AM AK G N E + ++S+ V + Sbjct: 279 HKDIYISASIGISVYPNDGDDGEMLLRRADRAMQKAKESGRNRFELYTAKLDYQSEVVTL 338 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L A+E +EL++ Y PI+ + ++I LEAL++W P G +S ++F+ +AEE +I Sbjct: 339 ENYLRKAIERNELFVCYQPIVNIKTKKIEALEALMRWKQPNIGFVSPAQFIPLAEETGLI 398 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 + ++ E+ I + A + I INI++ ++ + + ++ K P Sbjct: 399 VPMTKWLFEQACVHIKAIHQFAPH--VKIGINISAVHFQQDDFVQQLSTIVKKHDVHPRF 456 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 KL +ES +M N E S L +L++ G L +DDFGT S LSYL P D +K + S Sbjct: 457 FKLELTESTIMPNAEESVQKLVQLKQCGFKLAIDDFGTGFSSLSYLHRFPIDILKIDQSF 516 Query: 888 MTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + + I+ +II MA ++ +++A+ + E + L + CD Q ++A P+ Sbjct: 517 IRRLSLYSDDATIVSTIIMMAHHLHLSVVAEGVETEQQYEFLNKQQCDMAQGYYIAKPMP 576 Query: 946 FNSILKLLKE 955 + + + ++E Sbjct: 577 IDEVQQFVQE 586 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] gi|151281061|gb|ABR89471.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 150/589 (25%), Positives = 279/589 (47%), Gaps = 16/589 (2%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV---TTT 431 +L+ + TV + Q + + A+ S + V Sbjct: 318 ALLVSLAQRVTVEIRAHRDRHGRQAAEAALRLRERAIECSANAVIISSAQVPEFAIEYVN 377 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADN 490 P I G + G ++L ND + + + + +R + R + Sbjct: 378 PAFERITGYTAAEAIGRSSSFLLR---NDHEQAGLYEIRAALAEKREG-KAVLRNYRKNG 433 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 W + I P+ + G ++ +DIT K+ + A D LTG+PNR DR Sbjct: 434 SLFWNDLYIAPVKDDEGKTTHFVAAMSDITPMKQYETTLHRLASHDVLTGLPNRALLQDR 493 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L + SA + + V+++D+D++K +ND +G GD +L ++ R+ ++ D +A Sbjct: 494 LENAIAYSARNGHA-VWVVLVDLDRFKFVNDTMGHQAGDVLLKIISDRLQASVRESDTVA 552 Query: 611 RLSGNRFGIILISENN--SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 RL G+ F ++L + S +D + +++ P+ + E ++ S+G A + + Sbjct: 553 RLGGDEFVLVLPECGDGPSGYSSDVIQRIMEAVVKPLTIQGSEFFLSCSMGIAVYPNDGA 612 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHP 726 + +L +A++AMY +K G N+ + + ++ +R+ I+ +L A+E +EL L Y P Sbjct: 613 DPTTLLAHADVAMYRSKELGRNNFQFYTPAMNDQALERLRIEGELRHAIELNELVLHYQP 672 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + L IVGLEAL++W+HP G + F+ +AEE +I I ++L+ R +W+ Sbjct: 673 QVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLAEETGLIIPIGAWVLQTACRQAKAWQ 732 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 D + I +N++++ L E ++ + +T +++ +ES VM + ER+ L Sbjct: 733 DM-GFTQLRIAVNLSARQFTQASLLESIKDTLQETGLEARFLEIELTESSVMADIERNIL 791 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIP 904 L L+ +G+ L++DDFGT S L+YL P DT+K + S + + +I+ SII Sbjct: 792 TLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLKIDRSFVRDIAINQDDASIVSSIIS 851 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +A N++ +IA+ + + L GC+ IQ + PL + I LL Sbjct: 852 LAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYFCKPLPSDQIETLL 900 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 8/132 (6%) Query: 411 VLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 +L + IVW I + + + + G + + R WL I DR+ +L Sbjct: 51 LLAADKIVWVLRIPDGQVIYASKTVEALYGSSPERFYANSRLWLENIAPADREPALELLG 110 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK----- 524 S + + L+ R+ +D W+ R + +++G I DIT + Sbjct: 111 SILHEPQQTLR--LRINRSDGSPRWIEYHARFIPDTDGRSGHVKLIGTDITTRHHLEIAL 168 Query: 525 SLEGILCNAFQD 536 + A D Sbjct: 169 ARSNRALRAIHD 180 >gi|291613649|ref|YP_003523806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291583761|gb|ADE11419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 837 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 165/787 (20%), Positives = 326/787 (41%), Gaps = 43/787 (5%) Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257 V + + +L + +A +L +D + + Sbjct: 56 VIAAMVAYLLLRLHAIGEGS-SFNHQIAAALLAMSGLDGLHAMM------PDGESFVWLH 108 Query: 258 EIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI-----AR 312 +A + ++F ++L + + + + + A + S P + Sbjct: 109 SLATAFGGLLFAMIWLPGHWFKPVMRHWPLNAFLMAAAMGIYSILQPGQIPQMLASGQFT 168 Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAW-ILIFIWFIGLWMAITKRLDNDII---- 367 + + F++ +K + + +L F + L A + + I Sbjct: 169 QAAVIMNIGGGLFLLLAAVKLFLTYRHSAKSEDLLFFFQCLILASAAITFMQSSIWDMPW 228 Query: 368 -------QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE---RQSLAVLG--SG 415 L L+V + +L+ Q I + + +A + Sbjct: 229 WGWHMQRLAGYTLTLWLVVKTAKTIEGKTLLSNRLLKQQIEDRKQAENQLRIAATAFETH 288 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 + + D + + I G + + G L + + + + Sbjct: 289 EAIMITDAHANIIRVNQAFQNITGYSPEDVIGKNPRVLSS-GRQGSEFYAAMWKRLL--G 345 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 G E + + + + + I + ++ G Y+ I +DIT +K + E I AF Sbjct: 346 SGSWTGEIWDKRKNGEVYPKWLTITAVKDNEGVTTEYVAIFSDITLRKHAEEEIYTLAFY 405 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D+LT +PNR+ LDR+ +SA ++ ++ +D+D++K +ND LG GD LV + Sbjct: 406 DSLTKLPNRRHLLDRINQARSISARSNHY-GALLFLDMDRFKILNDTLGHDYGDLFLVEV 464 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLER 650 +RR+ ++ D +AR+ G+ F +++ + +A A +R ++ P L ++ Sbjct: 465 SRRMRNCVRDMDTVARIGGDEFVVLIEEIGTDNEEVSTKVALIAEKIRAALTEPYLLKDK 524 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIK 708 E + SIG + ++ + +L++A+LAMY AK G N V F + R ++ Sbjct: 525 EHHSSPSIGVCLYLGNEESVDTLLRHADLAMYQAKESGRNGVRFFDPAMQLAVETRAALE 584 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 D+ AV +L L Y + D +G EALI+W HP G +S ++F+ IAEE +I Sbjct: 585 ADMRHAVTGKQLRLYYQIQL-TSDHRPLGAEALIRWMHPVRGLVSPAQFIPIAEESSLIL 643 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++LE + ++ W + + IN++++ ++ + + L+ +P+R+ Sbjct: 644 EIGHWVLETACKQLVLWSKHERTRNLILAINVSAQQFNKHDFVDTVSTLLHLHQLNPNRL 703 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 KL +ESVV+ + + L+ +G+ L LDDFGT S LSYL +P D +K + S + Sbjct: 704 KLELTESVVLSDVADVVSKMHALKALGVKLALDDFGTGYSSLSYLKQLPLDQIKIDRSFV 763 Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + + ++++II +A N +IA+ + E + L + GC Q P+ Sbjct: 764 SDVTTDPSDAVMVQTIINLAHNFRMNVIAEGVETEDQLNFLKQNGCMAYQGFLFGKPMPI 823 Query: 947 NSILKLL 953 + LL Sbjct: 824 DEFEALL 830 >gi|220908932|ref|YP_002484243.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] gi|219865543|gb|ACL45882.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Cyanothece sp. PCC 7425] Length = 1051 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 147/582 (25%), Positives = 277/582 (47%), Gaps = 9/582 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 +I +I + + R L D+V D+ + +P T+LG Sbjct: 469 VIWDGLIIDISDRKQVEVALQESEARYRLLAENMNDLVCLHDLEGHYLYVSPSCETLLGY 528 Query: 441 ASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 M G + + H +D+ ++ + + +R+R + W Sbjct: 529 RQDEMLGQVP--FNFFHPDDQGRIYQEAFIPALSGEPRPI--TYRMRQKSGNYIWFETLT 584 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 +P+ G I++ + D+TE+ + E + +A D LTG+PNR ++RL + + Sbjct: 585 KPIFGQTGQIVQLQTTSRDVTERIQVQEQLKYDALHDALTGLPNRLLLMERLELAIHRAQ 644 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 V+ +D+D++K IND LG GD +L ++ ++ L+ D++ARL G+ F I Sbjct: 645 RLPGYHFAVLFLDLDRFKIINDSLGHLAGDQLLTAVAEKLCSTLRDIDLVARLGGDEFVI 704 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + +I F + + +PI + E+ +TASIG +S +L+NA++ Sbjct: 705 LLEEVKDIQEIIKFVDEIFAGLQIPILIAGCEVYITASIGIVFSDDKPAQASHLLRNADI 764 Query: 680 AMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK +G + E F + +R+ ++ DL AVE EL L Y PI+ L IVG Sbjct: 765 AMYRAKAKGKDRYEIFNMEMHAQALNRLHLENDLRRAVERQELILHYQPILALDTGHIVG 824 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 E L++W HP G ++F+ +AEE +I I+++ + + W+ + + Sbjct: 825 FETLVRWKHPIQGLKFPADFIAMAEETGLITHIDIWAISMACHQLAKWQAAFPGTKMKVS 884 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N+++ DL + L E + ++++ + L +ES+++ + E + LL +L++ G+ Sbjct: 885 VNLSAHDLRRSNLLEDIDNVLAQANIDGCCLCLEITESMLIEDIESTIKLLNQLKERGVQ 944 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT S LSYL +P D++K + S + + I+ +I ++ ++ IA Sbjct: 945 ILIDDFGTGYSSLSYLHRLPVDSLKVDRSFVNQIQVDNRNAKIVETIASLSVSLGLDAIA 1004 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + I +K L ++G + Q + PL + LL ++ Sbjct: 1005 EGIETPKQLKRLQKLGYKFGQGYLFSQPLTHKEVEILLGSQY 1046 Score = 77.3 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 12/205 (5%) Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD--NDIIQPALVGGLVLIVILIGFTVI 387 + A LLIP I +W A+ + ++ +Q A L V + + Sbjct: 281 LARDTPGAWLLIPLVIEGQLWGSFTVTAVQRPFTWNHNQVQLAQAVAAQLEVAIHQANLY 340 Query: 388 QHVL----ATGYFSQGIFSDGERQSLAVLGSGDIV----WDWDIVRDRVTTTPDIATILG 439 Q + + R I+ + D + + G Sbjct: 341 QQLQMELAERCQAEAALRESESRFQNIAANIPGIIYGYRFCADGSDQFTYISSGFCEVYG 400 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 H +D + + + + R + ++RV Q W+ Sbjct: 401 FEPDEALQDSSIIWQMTHPDDLERLKQSVIESYQTLQ-RWRCQYRVMTPAGQLKWLEGVS 459 Query: 500 RPMSNSNGDILRYIGIANDITEQKK 524 RP NGD++ + G+ DI+++K+ Sbjct: 460 RPTRQPNGDVI-WDGLIIDISDRKQ 483 Score = 48.0 bits (113), Expect = 0.008, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 15/125 (12%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASG---------SMHGPIRNWLPYIHINDR 461 + + + D TIL + + R ++ Sbjct: 48 LDATPIGIAVHDATGQLTYINQAGQTILSIDRAYQVSTDQLSEVFQVYRQGTQKLYPA-- 105 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 ++ + L + G G E Q + + P+ ++ G++ I DI+ Sbjct: 106 ESLPSTL-ALAGQVVGVDDLEL---HRRGQVIPLEVWASPIFDAQGEVTHTIATFQDISA 161 Query: 522 QKKSL 526 +++ Sbjct: 162 RRQLE 166 >gi|109900259|ref|YP_663514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] gi|109702540|gb|ABG42460.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] Length = 965 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 162/951 (17%), Positives = 339/951 (35%), Gaps = 31/951 (3%) Query: 15 FLILVLFLLWMVSPSFA-IEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISR 73 ++L++ L +V + +NI+ S ++L + + V Q+ ++ Sbjct: 13 LMLLLIMQLGLVLKAQTTQTSVNINDSTPSVNLITSSHWLV-ADNKVQLSDVQELKTWRD 71 Query: 74 RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI-ISVTP 132 + W L+ S+ I + + R+ + D R I Sbjct: 72 TFSPQPLNDNQS-LWGRVTLSTDSNH-RPFFISIDNPRIDALDIYVLDERDRIINSYRLG 129 Query: 133 SEGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWEPNFYKDTVNSFTL 190 + +R V + I ++I P + + + Sbjct: 130 TTRPHDNRPFEHRLFVVPVDIPYAQPRNIYIKIRDEGPLVFAFDVKSETALIQKEQRNST 189 Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250 + G +++ ++ I Y + RS F + Y+ + F +V+ +G Sbjct: 190 IFSLFSGALTMMVLYFLITYTLLRS---PVRFWFSVASTAYLLL-FLNSQGVVSHVTGFN 245 Query: 251 LIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310 S I + L + R + ++ + Sbjct: 246 QYIDNLSTILCALLLFSLAKITFTIFRPLPTYYRYFLYAMGWLSAASAFVLNSYQQILLV 305 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-----ND 365 + +++SIV+ I Y + LI + + + + Sbjct: 306 SGASISSIVVIAVLAIFYRYKGHTISNRVFALGLTLISLTTVAHIGLYLNWVAFPEQLSL 365 Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + +V G+VLI + I Q ++ + + + + Sbjct: 366 TLSTLIVIGIVLIAVAIAAHEKVIAFRHYNEQQTSIRALQQFVDMFEEAPEGRFISSLDG 425 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEF 483 + +A I G + + ++ N+R+ L + L E Sbjct: 426 QLLRANLAMAKIFGYEDVAQMKAHLPTMSALYAEPNERELLLGELHK----NQSTLSKEL 481 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R R NQ W+ + + N + D G DI+ +K + I A D LTG Sbjct: 482 RGRTRQNQDLWLSVSAQLSKNGDTDEKLICGSVVDISARKSDHQSIEYMASHDTLTGFYQ 541 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 RQ+F L + + T++ ++ID++K IND G GD VL L++ + +++ Sbjct: 542 RQAFEKSLHEAILFAKQQQE-ELTLLHVNIDQFKAINDTHGHKAGDAVLRQLSQLMKKIV 600 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 ++ RL G+ FGI+L+ N + ER +T+ SIG W Sbjct: 601 SDDGMIGRLGGDEFGILLVGNNAQNSFMLANKLLNAVQVHEFTWEERPLTLGVSIGQVPW 660 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS----DRVMIKEDLCLAVENSE 719 + +S ++L A+ A Y AK G N + ++ + + ++ + A+ ++ Sbjct: 661 NDTISSSEQLLSMADSACYMAKKHGRNRLHTYSSTDKQIAKYESQLSWLPRIQHALSHNG 720 Query: 720 LYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 L P + + + E L++ I SEF+ AE + I+ ++++ Sbjct: 721 FELHCQPYMPMTSIAKGHHYEILLRLVDEHDQRILPSEFLPAAERYNLSAKIDRWVIDTY 780 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 + + IN++ L + +L + + K ++I +ES+ + Sbjct: 781 FAWLAQNPQHKADL-MRCNINLSGHSLGEQDLKLFILSAFEKYQVPHNKICFEITESMAI 839 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896 + + + + +G + LDDFG+ S +YL +P D VK +G + + Sbjct: 840 LKLDETIEFIDTFKALGCTFALDDFGSGFSSYNYLKNLPVDQVKIDGEFVKNILIAPVDM 899 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 A++ SI +A ++ +A+ + + + EL ++G D++Q V P+ + Sbjct: 900 AMVNSIKDIASAMKIQTVAEYVESKEIMVELGKIGVDFVQGFGVNKPISLS 950 >gi|170079056|ref|YP_001735694.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886725|gb|ACB00439.1| two-component response regulator (ABC transporter) / (GGDEF domain protein) [Synechococcus sp. PCC 7002] Length = 868 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 137/597 (22%), Positives = 269/597 (45%), Gaps = 10/597 (1%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 +I L ++ +++ + + + +R + ++ ++ Sbjct: 266 FSLIVYLPFLFLGWFILR-NYSLKKEIKRRNQIETNLLESQQRYANLANTVSIGIFRTNL 324 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + +L + WL ++ +D D R + + E+ Sbjct: 325 RHECIYVNDYYCKLLAIQPEEALHK--GWLEKVYPDDIDYVREQWLKSITNQ-ELFTLEY 381 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R + +D W+ + +S G+ Y+ DI+ + K + + +A D LTG+ N Sbjct: 382 RFQRSDGSILWVYGQGTAELDSKGEPQGYVATITDISTRIKMEQQLKHDALHDRLTGLAN 441 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R ++RL L + +D+D +K +ND LG VGD++L+ + + + Sbjct: 442 RNLLIERLNLALKRYKRYPIHEFAALFLDLDNFKVVNDSLGHVVGDELLIEVAHLLKSFI 501 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 + D+ ARL G+ F I+L + A + ++ MP + + +T SIG Sbjct: 502 RDTDVAARLGGDEFVILLEEIHGVEDAVHIADRILNALNMPFQISNYGVFITTSIGIIIG 561 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELY 721 S ++ ++L++A++AMY AK G + F R+ ++ ++ A+E + Sbjct: 562 DSRHESAQDLLRDADIAMYRAKQNGKSQYAIFDPQMHLQAMQRLQLEGEIRSAIEEKQFV 621 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L Y PII L I G EALI+W HP+ G +S EF+ +AEE +I + ++L+ R Sbjct: 622 LYYQPIINLEQGNIEGFEALIRWQHPQRGLLSPYEFIDVAEETGLIIPLGEWILDAACRQ 681 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 + W+ P+ + +N++ K L D L + L+ + P+ + L +ES+++ N Sbjct: 682 LFEWQQAF-KTPLKVHVNLSVKQLQD-SLLFSLDRLLERYPVFPNTLGLEITESMLIQNI 739 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAIL 899 + + LL ++R G+ +++DDFGT S LSYL +P D +K + S + + ++ I Sbjct: 740 DITCRLLNQIRLKGVFISVDDFGTGYSCLSYLHQLPIDALKIDRSFVNISELNDRNRVIA 799 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 SI+ ++K+I +A+ I + + L C + Q + P+ + LL+ Sbjct: 800 ESILALSKSIGIKTVAEGIETKQQYQWLKSQDCQFGQGYLFSRPVSLDQATDLLQGH 856 >gi|152998292|ref|YP_001343127.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] gi|150839216|gb|ABR73192.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas sp. MWYL1] Length = 734 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 147/586 (25%), Positives = 280/586 (47%), Gaps = 15/586 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + Q + + R + A+ + +W+W++ +D TP T+LG Sbjct: 147 LFSSVGYAQKITPFKERESELIDAEIRVNEALKLTKVGIWEWNVDKDIWFATPSYFTMLG 206 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMII 497 A + L IH DR + +++ + + +Y+ R+R D + W+ + Sbjct: 207 YAPVEGMADRKAELEKIHPEDRQHVMDSVNNILTSKSESNYYKYQARIRHIDGNYRWIGV 266 Query: 498 RIRP-MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 R + R +G+ DI E +K+ + + A D+LT +PNR + I+ Sbjct: 267 RCIVTEFDQEDKPARMLGVRIDIDEIQKAHDQVEWLAHHDSLTKLPNRVALNKTFHKIIK 326 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 N + ++ ID+D +K +ND LG ++GD +L+++ R+ L+ +AR G+ Sbjct: 327 -----PNTKIALLFIDLDHFKNVNDTLGHSIGDQLLLTVADRMRTLVNNIGYVARQGGDE 381 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L ++N I A++++++ N+ + + +T SIG + + + + + Sbjct: 382 FIILLPADNEECLIEKTC-AIKEALSARYNIDQHQFFITPSIGVSLYPRNGEDFDTLYQR 440 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMYHAKH G N F + L A+E E L Y P I L+ + Sbjct: 441 ADAAMYHAKHTGRNRYAFFTEEMQAISTRALTLGNALHDAIERQEFSLHYQPQISLITGK 500 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I+G EALI+W + G++S EF+ +AEE I AI ++L AR + W ++ + P+ Sbjct: 501 IIGAEALIRWHSLELGHVSPGEFIPLAEENGQILAIGEWVLRETARQLKQWLEE-GITPV 559 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N++ N+L ++A++++ ++L +E + +PE + +L +++ Sbjct: 560 RIAVNLSYAQFQVNDLPSIVEAILNEYAVPAQYLELELTERIATKDPEHTITILESFQQL 619 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 GI ++DDFGT S LSYL P +K + S + I+ +II +A+ + T Sbjct: 620 GIHTSIDDFGTGYSSLSYLQRFPVYKLKIDQSFVRNMTTNTNDQVIVGTIILLAQQLGMT 679 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957 IA+ + + ++ L +GCD IQ +++ P+ + L+++ Sbjct: 680 TIAEGVETKAQLEMLYNIGCDDIQGYYISRPIPAEEFKIGFLQKKQ 725 Score = 41.1 bits (95), Expect = 1.1, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 4/161 (2%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 I+ L +LI I + + + + + + ++ D +W D Sbjct: 6 GTILGYFLALCFLLIFIYVYIRIKVERNILFQQLEHAENYKNQLTSSLDALSDPMWIKDK 65 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + P +GL+ + G + H + I+ + E+ Sbjct: 66 DQTYIYCNPAFEQFIGLSKLEIIGYKDEEIQSQH---VQLSQNIIPAITSNEETGATEEY 122 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 V + + + + + + +G A IT K+ Sbjct: 123 -VCLPCGNVDYFQVSTERIYDISDQLFSSVGYAQKITPFKE 162 >gi|229592709|ref|YP_002874828.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas fluorescens SBW25] gi|229364575|emb|CAY52459.1| putative putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25] Length = 1283 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 264/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G + + N L + Sbjct: 715 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYEVSDVLDQLPNMLT-V 773 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R +L ++ + E ++ + + + + I + + GD+ Y+ Sbjct: 774 DEQQEAHLRYVLKQL--HQHSTWEGEVWLKRRNGEHYPAWVGITAVFDDEGDLASYVCFF 831 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL T L + + +M +D+D++ Sbjct: 832 SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSW-VVLMFLDLDRF 890 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 891 KPINDSLGHAAGDRMLKEMATRLLGCVAEDDTVARMGGDEFTLLLQPRISREMALNRAIH 950 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 951 VAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1010 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A++ +E L Y P + + G EAL++W HP+ G Sbjct: 1011 QFYQADMNASALERLELESDLRHALDQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1070 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + +++ R + +W P + +NI+++ D +L Sbjct: 1071 LVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQNKVRVP-KVSVNISARQFSDGQL 1129 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ T P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1130 GTRIATILKDTGLPPACLELELTESILMREVNEALHILDSLKNLGLSIAVDDFGTGYSSL 1189 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + + L Sbjct: 1190 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1249 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ N Sbjct: 1250 EHGCDEVQGYLFGRPMPANRFEA 1272 Score = 64.6 bits (156), Expect = 8e-08, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 56/164 (34%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + S+ + +R + D++ D +P + +LG Sbjct: 566 IGVAKDITDQIEASESLRDSEQRYRMLAESISDVICSTDSQLALNYISPSVNAVLGYDVD 625 Query: 444 SMHGPIRNWLPYI-HIND-------RDNFRTILDSFVGYRRGRLQYEFRV-----RAADN 490 + W I + + L + R + + ++ AD Sbjct: 626 WVFKN--GWQSIIANPQQLTGIYSLVEQVSRALGDIEALNKLRDEIQTQLFLFDCLRADG 683 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G +G+ DI++Q+++ + + A Sbjct: 684 RKVPIELRLVLVWDEHGAFEGILGVGRDISQQRRAEKDLRMAAT 727 Score = 58.4 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 4/151 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 I + + + S V D ++ D++ R + + + LG Sbjct: 433 ILSISDITSRKLIELSLVERESFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGHTLGYNK 492 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + +H D +++ + +LQ + R R +NQ+ IR + Sbjct: 493 AELQQMGEYFWEILLHPEDAEHYHDLRQQQRQVGYTTQLQCQLRFRHRNNQWRRFDIREQ 552 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + + + I R IG+A DIT+Q ++ E + Sbjct: 553 ALARDKSAQITRIIGVAKDITDQIEASESLR 583 >gi|301383265|ref|ZP_07231683.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] gi|302133478|ref|ZP_07259468.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 1250 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 148/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 682 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 740 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 741 ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 798 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 857 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 858 KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 917 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 918 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 977 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 978 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1096 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1097 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ Sbjct: 1217 EHGCDEVQGYLFGRPMPPKQFEA 1239 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 592 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 593 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 650 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G+ G+ DI++Q+++ + + A Sbjct: 651 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 694 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 + + + + LG + + +H +D +++ + L LQ Sbjct: 440 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 499 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532 R R +N + +R + + ++ + R IGIA DITEQ + S + Sbjct: 500 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 559 Query: 533 A 533 A Sbjct: 560 A 560 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] gi|133738226|emb|CAL61271.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF domains [Herminiimonas arsenicoxydans] Length = 710 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 157/574 (27%), Positives = 274/574 (47%), Gaps = 10/574 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445 IQ + + + R + + ++ + P +A + G + Sbjct: 142 IQDITERKQADEALREAERRYRSIFENAIEGIYQSTPSNGYLAVNPALARMYGYDTPQDL 201 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 +R+ ++++ R + +E R+ ++ W+ R + S Sbjct: 202 ISMLRDIEHQLYVD--PQRRIEFMRQMAENGIVTNFESRIYKSNGDIIWISENARAVHTS 259 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G++L + G ITE+K I A D LTG+PNR DR+ + SA NL Sbjct: 260 TGELLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSARYGNLT 319 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 + +D+D++K IND LG VGD++L +R+ L+ D +AR G+ F ++L S+ Sbjct: 320 -AIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTSQP 378 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + I + +A P E +T S+G + +LKNA+ AMY AK Sbjct: 379 SEESITHTMQRVLHEVAQPWMANGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAK 438 Query: 686 HRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N+ + F +DR+ + L A+ N E L Y P I L + +I+G EALI+ Sbjct: 439 ELGRNNFQYFATEMNDTATDRLALLNRLRQAIPNHEFVLHYQPKINLANGDIIGAEALIR 498 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+ + G +S F+ +AEE +I I +++LE R +W+ A PI I +N++S+ Sbjct: 499 WNSAE-GMVSPGSFIPLAEETGLIIPIGVWVLETACRQNRAWQ-LAGYAPITISVNLSSR 556 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L ++ E ++ ++++T ++L +ESV+ + E+S LL RLR +G+ ++LDDF Sbjct: 557 QLARGDIVEQVEQVLAETGLEAQYLELEITESVMASDVEKSFALLTRLRLLGVKISLDDF 616 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL P DT+K + S + ++ AI+++II + N+ T++A+ I E Sbjct: 617 GTGYSSLSYLKRFPVDTLKIDQSFVRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETE 676 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L + C+ Q ++ P+ LL+ Sbjct: 677 EQFQFLLKSACNEGQGYLMSRPVSHQHFELLLQR 710 Score = 76.5 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 429 TTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + + G + ++ H +DR+ RT + V R R E+R+ Sbjct: 55 FVSEGCLALTGYTEEDILFNSRVSYDDITHPDDREYVRTAVMQAVTGNR-RFDVEYRIVR 113 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 AD + W+ R + N G DITE+K++ E Sbjct: 114 ADGEVRWVWERGTNAMHDNKKWGVLEGFIQDITERKQADE 153 >gi|323703086|ref|ZP_08114741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfotomaculum nigrificans DSM 574] gi|323531980|gb|EGB21864.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfotomaculum nigrificans DSM 574] Length = 619 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 135/573 (23%), Positives = 255/573 (44%), Gaps = 13/573 (2%) Query: 393 TGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + R + + DI+ D+ + + + + G + Sbjct: 50 GVEEERKQYQEELRFKSKLLDEANDIILAHDLKGNIIYCNKAASRLHGYSYEEFKSLNLR 109 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L + + +G L +E D + + R + I Sbjct: 110 DLDT--PEFASLIEARMQELLA--KGELAFESAHFRKDKTILPVEVHARVIELQGKKI-- 163 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + I DITE+K + E I A+ D LT +PNR ++L L + R V+ + Sbjct: 164 VLAINRDITERKNAEEKIYYMAYYDPLTNLPNRWLIKNQLAQELARARLYQQ-RLAVLFL 222 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+ ++K ND LG +VGD +L + R+ L+ + R+ + F I+L + + Sbjct: 223 DLHRFKLTNDTLGHSVGDRLLQGVADRLRSCLRKGCFIGRMGDDEFIIVLPNISYIEDAT 282 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + +++ +P N+ ++ V A IG A + +LKNA AMY+AK GG+ Sbjct: 283 GMAGEIIQTLQLPFNIDGHKLHVNARIGIAVYPDHGDNPESLLKNANNAMYYAKDHGGSG 342 Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + + + L A++ E L Y P + L +I+G+EALI+W HP Sbjct: 343 YQVCTSHMNDNFSRSLILENSLRQALKRQEFILYYQPQVDLKTGQIIGMEALIRWQHPDL 402 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G ++ EF+ +AE +I I ++L+ +W+ PP + +N++++ + Sbjct: 403 GMVAPDEFISLAESTGLIGPIGEWVLKTACVQNKAWQAAGL-PPFLMAVNMSARQFRQRD 461 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ +T +P+ + L +ESV M N + L +L+++GI + +DDFG S Sbjct: 462 LVHTVDEVLKETGLNPAWLTLEITESVAMQNTQNIISALKQLKEMGIQIAMDDFGKGYSS 521 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 LS+L +P D +K + S I+++ I M K++ ++A+ + ++ L Sbjct: 522 LSHLRQLPIDKIKIDRSFTWDINTVNGANIMKAAIAMGKSLNLRVLAEGVENGEQLEFLK 581 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 GCD Q + PL ++KLL +++ + K Sbjct: 582 THGCDEAQGYLFSRPLPAIEVIKLL-DKYQVTK 613 >gi|330961078|gb|EGH61338.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 829 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 149/563 (26%), Positives = 262/563 (46%), Gaps = 12/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 Q + + + + V D + I G G R Sbjct: 256 HQQMQEKLHLAATVFESTAEGVLITDTDQRITAVNRAFTEITGYGESDAIGLTPRLLASG 315 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D + ++ G Q E R D + + + I + + +G + ++ + Sbjct: 316 QH--DSAFYASMWHQLTAE--GHWQGEISNRRKDGELYPSWLTISAVRSKDGLLTHFVAV 371 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI+ K++ + A D LTG+PNR F +RL + L L V+ +D+D+ Sbjct: 372 FADISSLKQAQARLDYQAHHDPLTGLPNRTLFENRLQSALLHCEESGGL-GAVLFLDLDR 430 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG VGD +L + R+ E L+ D +AR+ G+ F ++L A Sbjct: 431 FKHINDSLGHPVGDLLLKGIAHRLKESLRDIDTVARVGGDEFIVLLPGLLQPSDALTIAN 490 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + P E E+ ++ SIG + + ++KNA+ AMY +K +G N VES+ Sbjct: 491 KLLACFNAPFEAGEHELFISPSIGSCLFPDDGTDVATLVKNADAAMYRSKAKGRNRVESY 550 Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 S+R+ ++++L A++ ++ L Y P I L+ + +VG EALI+W HP +G++ Sbjct: 551 TRDLTVQASERIALEQELRRALDRNQFSLAYQPKICLLTQALVGAEALIRWSHPTFGDVP 610 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AEE MI I ++LE+ R + WR P + +N+A L L E Sbjct: 611 PENFIPLAEENGMILQIGDWVLEQACRQMGKWRK-TRQPFGPLSVNLAGAQLRQPNLVEH 669 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ L++ P ++L +E+ +M + + +L +L+ +G+ L +DDFGT S LSYL Sbjct: 670 IETLLADNGLIPGCLQLEITENFIMSQTQEALAVLHKLKTLGVQLAIDDFGTGYSSLSYL 729 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S + G AI+R+II + ++++ T+IA+ + + L G Sbjct: 730 KRLPLDILKIDQSFVRGLPDDTHDAAIVRAIIALGRSLQLTVIAEGVETREQQQFLASEG 789 Query: 932 CDYIQDSHVASPLGFNSI-LKLL 953 C+ +Q + PL + L Sbjct: 790 CEQMQGYLTSLPLPAEEFSARFL 812 Score = 43.4 bits (101), Expect = 0.19, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 18/158 (11%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGLAS 442 +++ + Q + E+ + A + D + + I G + Sbjct: 122 LVIVRDITQLKQAQQQLQLSEEKFANAFHATPDGLSITRQNDGMLLEVNEGFCRITGYSE 181 Query: 443 G-SMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + + W NDR L S R + R+R A + Sbjct: 182 QYCLEHSTFDLGVWADL---NDRHTMIERLKSHGQVR----DFRTRLRDASGNIRICEVS 234 Query: 499 IRP--MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +P ++ + + I DIT+ ++ E + A Sbjct: 235 SQPLVIAGED----CVLTITRDITQHQQMQEKLHLAAT 268 >gi|239909085|ref|YP_002955827.1| putative signaling protein [Desulfovibrio magneticus RS-1] gi|239798952|dbj|BAH77941.1| putative signaling protein [Desulfovibrio magneticus RS-1] Length = 821 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 143/567 (25%), Positives = 264/567 (46%), Gaps = 8/567 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + + + + S + D+ R+ V + G + Sbjct: 242 GTVVDITDRKRAEEQLAAQRAYFDQLFANSPQAIALIDMRRNIVDVNHAFEDLFGFKAAE 301 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G YI + + ++ FR + D + + + P+ Sbjct: 302 IKG--YGMRAYIVPKHLLGECESTRGAILSGKPMVRETFR-QHRDGRLIPVSMIGFPIEF 358 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G + I DI+E+K E I AF D LTG+PNR F DRL L + + Sbjct: 359 G-GQPQGIVYIYQDISERKAFEEQITHQAFHDALTGLPNRSLFADRLDRALTRARRRGDY 417 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V++ID++K+K IND LG GD +LV ++RR+ ++ D +ARL G+ F +IL Sbjct: 418 QYAVLMIDLNKFKGINDTLGHQAGDQLLVEVSRRLMACVRSMDTVARLGGDEFAVILEEL 477 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + ++ + ++ P L +T AS+G T + ++L++A++AMY A Sbjct: 478 KSKKEVMAVVDRIGAALGKPCMLCGTTVTPGASVGIVLRTRDYQSPEDILRDADIAMYRA 537 Query: 685 KHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 K G + R D + ++ DL A++ EL L Y PI+ + I G EAL++ Sbjct: 538 KESGRPSMIFDRRMHQEILDAINLEADLRAALDRGELLLHYQPIVDVQTGRIEGFEALVR 597 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIAS 802 WDHP G + +F+ +AEE +I+ + F++ R + +W+ + + + +N++ Sbjct: 598 WDHPDRGLVPPVQFIPLAEETGLIQPLGRFVIAEACRQLRAWQLELPEAEQLSVSVNVSC 657 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L + + ++ T P+ +KL +ESV+M + + + L RL+ +G+ + +DD Sbjct: 658 HQFVKEGLVDHVAGVLETTGLDPACLKLEITESVLMHDAQHTAGELSRLKALGVKIAIDD 717 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +P D +K + S + + I++SII +A+++ T+IA+ + Sbjct: 718 FGTGYSSLSYLRQLPIDHLKIDRSFISGDDVNGESQEIVKSIIALARSLGLTVIAEGVEH 777 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFN 947 + + +L CD Q + P+ + Sbjct: 778 QDQLDKLRNADCDKAQGFMFSRPVDKD 804 Score = 88.5 bits (218), Expect = 5e-15, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 8/161 (4%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440 + + + + + + + + + + ++ + +A I G Sbjct: 111 VSCVIFRDISGRRRAEEQLDAAERKYRAIFENAVEGIFQTTPGGRYLEVNRTLARIYGFD 170 Query: 441 ASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + M R+ ++ RD+F L + R +E + D W+ Sbjct: 171 SVDEMTEHFRDIKNQLYVEPKRRDDFVRELSAHDQVR----NFESAIHKKDGSVIWISEN 226 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538 R + +++G + Y G DIT++K++ E + A+ D L Sbjct: 227 ARVVRDADGAVAYYEGTVVDITDRKRAEEQLAAQRAYFDQL 267 Score = 46.5 bits (109), Expect = 0.021, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 8/123 (6%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI-NDRDNFR 465 S + D + + GL + + G R+ + +D + Sbjct: 13 YRRIFESSPNAALVRDASGVVLAVNASFEALFGLDAAEVVG--RDLRQVVRPADDGETAG 70 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 R A D P +G + + I DI+ ++++ Sbjct: 71 GDW----SLGGAAFSRRTRWTAGDGVTVDACPCQFPAGQVDGKPVSCV-IFRDISGRRRA 125 Query: 526 LEG 528 E Sbjct: 126 EEQ 128 >gi|192360831|ref|YP_001982921.1| EAL domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686996|gb|ACE84674.1| EAL domain protein [Cellvibrio japonicus Ueda107] Length = 798 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 157/689 (22%), Positives = 292/689 (42%), Gaps = 14/689 (2%) Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH-GMKGYE 335 ++ + + + P + + R + +Y + E Sbjct: 101 QYLLRASRAFADLSLSESKTRALLSNLPDIIIRLHREGAVLDMQVGSYVFDMGEWLHSAE 160 Query: 336 RAVLLIPAWILIFIWF-IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 +P+ I I I + + + I Q VL Sbjct: 161 DGSYHLPSDIAALIGTRIDAALRGKGMQMLEFQWSRDPMCVRHWEARIVPRDRQEVLLVV 220 Query: 395 YFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + L S + + D ++ TI+G + G + Sbjct: 221 REITQRRQQENQLRLWAKVFEASNEAILITDANFRIISVNRAYETIMGYREQDVLGV--D 278 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L +F L S + R G Q E + + + ++NS G+ Sbjct: 279 TLEVGAKLQTYSFYRNLVSLLKER-GHWQGELINQRKSGEEFPSWFSVTQVTNSRGEPEH 337 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 YI I NDITE K S I A D LTG+PNR DRL + + ++ I Sbjct: 338 YIAIFNDITEHKNSRAQIEFLAHHDALTGLPNRILLNDRLEMAITQVRR-QGEKLGILFI 396 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND LG VGD +L +R+ ++ D ++RL G+ F ++ +A Sbjct: 397 DLDRFKNVNDSLGHGVGDQILQEAAKRLTANVRTGDTVSRLGGDEFVVLFPRVRTEGNLA 456 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 D I +R+ + +P + + +T SIG A + + ++KNA+ AMY AK +G N+ Sbjct: 457 DLTIKLREQLQLPYTVDGISLHITPSIGIAVYPDDGEDPNTLIKNADAAMYLAKEKGRNN 516 Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + + DR+ ++ DL A++ + L Y P I ++ GLEALI+W H + Sbjct: 517 YQFYTPTLNAKTLDRLKLESDLRSAIDAGDFELHYQPQIIGSSGQLWGLEALIRWRHRER 576 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS +EF+ +AEE +I + ++L + + + WR Q + + + +NI++ + Sbjct: 577 GLISPAEFIPLAEETGLIVGLGDWVLVQAVKQLAEWRRQGHNH-LVVSVNISALQFRQGD 635 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + ++ ++ + P I+L +E+++M + + + L LR++G + +DDFGT S Sbjct: 636 FLDRVKHILQEAQLVPDAIELELTETMLMQDVQSAIQTLKGLRELGFRIAIDDFGTGFSS 695 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL ++P + +K + S + + +AI+ SII +A+ + IA+ + + L Sbjct: 696 LNYLRHLPINVLKIDQSFVREMLQEPESLAIVESIIALAQALGKETIAEGVETRAEFDVL 755 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956 GC +Q A P+ + +++ Sbjct: 756 QARGCRLMQGYFFARPMPPVIFDQWYQQQ 784 >gi|118579339|ref|YP_900589.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118502049|gb|ABK98531.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter propionicus DSM 2379] Length = 718 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 154/597 (25%), Positives = 289/597 (48%), Gaps = 21/597 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I + ++ + + + + R S A + W+W+ + D V + I+G+ Sbjct: 116 ILAYRVNYIFRSSRAFRDLRTSEARLSKAQQLARMGSWEWNPLLDVVQLSEPCRQIMGID 175 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMIIRIR 500 S + I + + H R R LD+ + R L + + AD + ++ + Sbjct: 176 SATQVRDIASLIALAHPLGRPYLRKGLDALME-RGRPLSLDCQTATADEEDKRFIHLEAE 234 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 +++G I G DIT +K + E I A+ D+LTG+PNR F + L L S Sbjct: 235 EHRDASGRITLVSGTIQDITSRKLAEEKIRYLAYYDSLTGLPNRVLFKEHLRRALATSEQ 294 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL----------- 609 + +M++D+D++K IND LG GD +L + R+ ++ D + Sbjct: 295 HKR-QLAIMLLDLDRFKGINDSLGHDAGDLLLQQVADRLRLRVRPYDTVSRDSEEQRDSL 353 Query: 610 -ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 ARL G+ F I+L A A + +++ P L E+ ++ SIG + + Sbjct: 354 IARLGGDEFTILLEGITTPEAAARVARRVIEALEAPFALNGNEVFISCSIGISIYPHDGT 413 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHP 726 ++KNA++AMY AK G + + + + + L A E E +L Y P Sbjct: 414 DLEILVKNADVAMYCAKDLGCSTFQFYTQEMNSVSLQRLILETHLRKAFEKEEFFLHYQP 473 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I + I+GLEAL +W++P+ G +S F+ +AEE +I A++ ++L + + + +W+ Sbjct: 474 QIDCVTNRIIGLEALARWNNPELGLVSPGSFIPLAEETGLIIALDRWVLATVCKQLEAWQ 533 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 +P + + +N++++ L L + +Q + S+ + + L +E ++M N E Sbjct: 534 AA-GIPLVRVAVNLSARHFLKANLNKTIQQIRSRGAAARDHLDLEITEGMLMENAEEVVS 592 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIP 904 +LG L++ G+++++DDFGT S LSYL +PF T+K + S ++ S + +++ +II Sbjct: 593 VLGMLQETGVNISIDDFGTGYSSLSYLTRLPFHTLKIDRSFISQSGDNVESASVVTAIIA 652 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLV 960 +A ++ ++A+ + ++ L GC IQ + PL + I +LL+E R P Sbjct: 653 LAHSLGKEVVAEGVETSTQLQFLKENGCRVIQGYLFSRPLPEDKIRELLREGRIPGA 709 >gi|212640028|ref|YP_002316548.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus WK1] gi|212561508|gb|ACJ34563.1| Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) [Anoxybacillus flavithermus WK1] Length = 647 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 148/571 (25%), Positives = 279/571 (48%), Gaps = 11/571 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q + + + DIV+ ++ + + P + G + + L Sbjct: 84 ELRQKMKISEQYYRSLFEHNPDIVYSTNLEGNFTSVNPAFERVFGYKAEEILHTNA--LD 141 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 YI D R + + R E + + + + I+ P+ +G + G Sbjct: 142 YIKREDIPRVRRYFYRALKGKVQRYNLE--IPSKSGEVYLFQIKNVPII-VDGKKVGIYG 198 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DITEQK++ E I A+ D TG+PNR F + + ++ + V+ ID+D Sbjct: 199 IGRDITEQKRAEEHIKYIAYHDVDTGLPNRLKFTNIVKQAINEAKETGGT-LAVLFIDMD 257 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND +G GDD+L + RI ++L R G++F ++L ++ + ++ Sbjct: 258 RFKIVNDTIGHYGGDDILKQMAERIKKILPDGAHFGRFGGDKFSLLLTKRTDAQTVIEWT 317 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + IA+PI E+E +TAS+G + + + + + +LKNA+ A+ AK +GGN V Sbjct: 318 KKLLQHIALPIVYEEKEFFLTASVGVSFYPADGVDAQSLLKNADTAVNRAKQKGGNSVML 377 Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + +++ RV ++ L A+E +E +LVY P++ L+ +IVG EAL++W+HPK G + Sbjct: 378 YATKMNEQVIYRVELERYLRKALEKNECFLVYQPLLDLVTGKIVGSEALLRWNHPKIGLV 437 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S EF+ +AEE+ I + ++L W D + + +N+++ E Sbjct: 438 SPLEFIPLAEEIGFIHDLGRWVLTEACMQTKKWHD-LGFHSLMVSVNVSASQFQHPTFFE 496 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 +Q + ++ + L +ES +M N S ++ +L+++G+ +++DDFGT S LSY Sbjct: 497 DVQRALKQSQLPAHCLHLELTESSMMRNMYYSIQVMKQLQQLGVHVSIDDFGTGYSSLSY 556 Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P +T+K + S + + R AI++SII M + ++A+ + +K L R+ Sbjct: 557 LKDLPINTLKIDRSFIYQLHKDRSDIAIVKSIITMGHGLRLKVVAEGVETAEQMKLLKRL 616 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 C Y Q + PL K + + +++ Sbjct: 617 KCHYAQGYAIFKPLSAEQFEKQVLQGNAVIQ 647 >gi|254457492|ref|ZP_05070920.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Campylobacterales bacterium GD 1] gi|207086284|gb|EDZ63568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Campylobacterales bacterium GD 1] Length = 794 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 136/583 (23%), Positives = 287/583 (49%), Gaps = 10/583 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++ + +++ T + I A + W+++++ + + ++ ILG+ Sbjct: 215 IMVQKLTKYIDNTQKLNDTILQKEAHLKEAQRIAKVGSWEYNVIDGSLLLSDEVYRILGV 274 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G+ +++L +I +D DN +++ + + + ++ + ++ R + Sbjct: 275 KFGTAI-TWKDFLDFISKDDYDNVVKVIEDAIKH-GSKFNIKYALILKSKNEIYVQTRGK 332 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + G ++R ++ DIT K+ + I A+ D+LTG+ NR DR+ + + Sbjct: 333 -VRKKAGGMVRITAVSMDITNDIKNKKTIEKLAYYDSLTGLANRTLLKDRMHKAIQYAKR 391 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + VM +D+D +K IND LG +VGDD+L+ + + ++ D L+RL G+ F I+ Sbjct: 392 -EQTNLAVMFLDLDHFKLINDTLGHSVGDDMLIHIAEILKIHIRESDTLSRLGGDEFVIL 450 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L S + + A ++ ++ ++ + ++ +T+SIG + + S E+++NA+ A Sbjct: 451 LPSVKSIFDAQNIASKIQHTLQSKHDIGDHQLYITSSIGVSLYPDHGDNSEELIRNADTA 510 Query: 681 MYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVG 737 MY AK+ G N+ + S + ++ +++DL AV++ + + Y I + I G Sbjct: 511 MYEAKNSGRNNYRIYSQSMGNYVDQQLHLEQDLIQAVKHKAGIEVFYQAKIDSENNFISG 570 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL +W HP G I +F+ IAE ++ + ++E + W + + I Sbjct: 571 AEALARWRHPTNGLIFPDQFIHIAESTGLMIELGNIIIEESIFQLQEWNK-LGLVGLKIA 629 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN++++ D L + +++ SPS+++ +E++ M N + +L L+ IG+S Sbjct: 630 INLSARQFQDPNLVSFISSMLHNYQVSPSQVEFEITETLSMTNMTNTLRILTELKAIGVS 689 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT S L+YL P +T+K + S + + I+++I+ MA ++ +A Sbjct: 690 IAIDDFGTGHSSLAYLKKFPINTLKIDRSFVLDIIEDDDDKTIVQTIVSMAHSLGFNTVA 749 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + + + L MGCD +Q + + P+ + K +++ P Sbjct: 750 EGVETLEHVALLKTMGCDQLQGYYFSKPIPKDEFTKFIQDYMP 792 >gi|332528558|ref|ZP_08404546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hylemonella gracilis ATCC 19624] gi|332042069|gb|EGI78407.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hylemonella gracilis ATCC 19624] Length = 607 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 142/590 (24%), Positives = 270/590 (45%), Gaps = 36/590 (6%) Query: 388 QHVLATGYFSQGIFSDGE--RQSLAVLGSGDIVWDWDIV-------RDRVTTTPD---IA 435 +H + Y +Q E R S + W+ D + + + Sbjct: 24 RHAVEARYQAQMAQLRAEQVRLRELAEMSSEWFWEMDEELRFSKVYGGGLLVSSSSTDVE 83 Query: 436 TILGLASGSMHGP---IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQ 491 + LG + W + + R+ + +++ + Q Sbjct: 84 SPLGKRRWELPITNVAPEKWTEH-------------RQMLETRQPFKDFVYQIHSPLTGQ 130 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 HW I +P+ NG Y G+ DITE+K+ + A+ D LTG+PNR DR+ Sbjct: 131 LHWCSISGKPIF-ENGKFKGYHGMGVDITERKRVEMRVEFLAYHDALTGLPNRALLQDRM 189 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 + + + + ID+D +K+IND LG A GD +L + R+ ++ D ++R Sbjct: 190 QQAIAQAERAQDG-LALAFIDLDNFKRINDSLGHAAGDALLREIATRLKGCVRESDTVSR 248 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 SG+ F ++L + + + +++ P++ +EI+ +ASIG A + T Sbjct: 249 QSGDEFIVVLSGVDGVQRCIPTLDKIMRTLQEPMHFEGKEISASASIGVAFYPQDGTTFD 308 Query: 672 EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729 E+ K A+LAMY +K G N + +++ + ++++ L LA+E EL L Y P + Sbjct: 309 ELRKKADLAMYRSKDTGRNAYYFYDEAMNNDAEEHLLLRNGLRLAIERGELVLHYQPQMD 368 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 + +VG+EAL++W P +G + F+ +AE+ +I I ++LE+ R +W+D Sbjct: 369 IRSGRMVGVEALLRWQSPTFGLVEPGRFIPVAEDSGLIVPIGAWVLEQACRQARAWQDDG 428 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P + + +N+++ +++ + + ++ P ++L +ES+++ + E+ L+ Sbjct: 429 L-PALTVAVNLSAVQFRRDDVEATVDQALERSGLPPHCLELELTESILLQDVEQVLALVQ 487 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAK 907 RLR+ G+ ++DDFGT S L+YL + D +K + S + + AI+ +I+ MA Sbjct: 488 RLRQRGMHFSIDDFGTGYSSLAYLKRLDIDKLKIDRSFVHDLDQTADAAAIVEAIVEMAH 547 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + IA+ + + L +GCD Q A P+ + L F Sbjct: 548 KLGLRTIAEGVESPELLDRLRDIGCDEAQGYLHARPMPAQDFSRYLHAHF 597 >gi|330505534|ref|YP_004382403.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328919820|gb|AEB60651.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 765 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 155/554 (27%), Positives = 271/554 (48%), Gaps = 9/554 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + I + + + + V D + V P + I G +S + G L Sbjct: 196 QRAIDDSLRQAAAVFDATQEGVLVTDAKQCIVHVNPAFSRITGYSSEEILGQHPTLLKSG 255 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + F L + R G E R + + IR + + G + Y+ + Sbjct: 256 RHD--AAFYHSLWHALENR-GAWSGEVWNRRKSGEIYPQWQCIRVIHDEQGRVSHYVAVF 312 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT K+S + A D L+ +PNR F +R+ L+ S ++ LR V++ID+D + Sbjct: 313 SDITALKRSQRELDYLAHHDPLSNLPNRLLFTERVAHALERSTLEE-LRGAVLLIDLDHF 371 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IN+ LG VGD +L + R+ + L LARL G+ FG++ + + + A+ A Sbjct: 372 KHINESLGHNVGDLLLKGVGERLQQDLPSGSTLARLGGDEFGLLSENCAEAAQAAELAQR 431 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + +S+ P L E+ + ASIG + + + ++L+NA+ A++ AK G + Sbjct: 432 LLRSLEPPFRLDGHELYIGASIGISLFPEDADSVEQILRNADSALFKAKSSGREGYAFYV 491 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + RV + L A++N EL + Y P+ L D VG+EAL++W HP+ G I Sbjct: 492 QELTDYARQRVELASSLRHALDNQELRVYYQPLHDLRDGRQVGMEALVRWQHPQRGLIPP 551 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ IAE+ MI I+ ++LE+ R ++ W + + F+ +N++S+ EL + Sbjct: 552 GEFIPIAEDNGMIGVIDAWVLEQACRQMVRWNAEEHALS-FVAVNVSSRLFSRGELDLKV 610 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++++T P +++L +ES +M +P+ + LL LR +GI L +DDFGT S L+ L Sbjct: 611 ASVLAETGLPPEQLELEVTESAIMEDPDAALKLLTSLRALGIRLAIDDFGTGYSSLARLK 670 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G + AI R++I + K++ ++A+ I L +GC Sbjct: 671 RLPVDKLKLDQSFVRGLPDDPEDAAIARAVIALGKSLGLKVLAEGIEQPAQADFLRELGC 730 Query: 933 DYIQDSHVASPLGF 946 +Y Q H P Sbjct: 731 NYGQGYHFGHPQPV 744 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 2/182 (1%) Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 + + ++ + + + L L+ + +H + + ER LA+ Sbjct: 28 LLAALGLSVAQQERLQSFKGLFFVTLTSSLLYLVLHRHARQYRSARLQLAGNEERLRLAL 87 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + D +WDWD+ RV + A +LGL ++ W +H +D++ L++ Sbjct: 88 DATRDGLWDWDVSSRRVFFSEGYAKLLGLTPQTLGDTREAWAERLHPDDQERALHALNA- 146 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + + +R+R AD + W+ R R + + NG R+IGIA+DIT Q+ + + Sbjct: 147 -EFGEQHYENIYRLRHADGSYRWIHSRGRLLRDENGQPQRFIGIASDITRQRAIDDSLRQ 205 Query: 532 NA 533 A Sbjct: 206 AA 207 >gi|66047492|ref|YP_237333.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63258199|gb|AAY39295.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 1278 Score = 552 bits (1423), Expect = e-154, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 262/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 710 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 768 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 769 ESEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 826 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 827 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 885 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 886 KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDESREAALNRAIH 945 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 946 VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 1005 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 1006 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 1065 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1066 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1124 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ + SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1125 GKRIAHILEQAGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1184 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1185 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1244 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ Sbjct: 1245 EHDCDEVQGYLFGRPMPPAQFEA 1267 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 11/162 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 561 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 620 Query: 444 S-----MHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRV-----RAADNQF 492 I N + + +LD R R + R+ AD + Sbjct: 621 WIIQNGWSAAIANPQQIVGFDALMSRIDKVLDKPQELARLREEVTTRMFLFDCLRADGRK 680 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + +R+ + +G+ G+ DI++Q+++ + + A Sbjct: 681 IPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 722 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 428 ILSIGDITSRKQVELSLLDRESFWSDVVQTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 487 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 +H + +H +D +++ + L LQ R R ++ + IR + Sbjct: 488 SELHAMGEFFWEVLLHPDDARHYQDMRLRQRHHGHNELLQSVLRFRDRESNWRSFDIREQ 547 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DITEQ + S + A Sbjct: 548 ALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 588 >gi|253999917|ref|YP_003051980.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253986596|gb|ACT51453.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 821 Score = 552 bits (1423), Expect = e-154, Method: Composition-based stats. Identities = 154/555 (27%), Positives = 273/555 (49%), Gaps = 15/555 (2%) Query: 410 AVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FR 465 A+ S + D+ + + G +S G +L +DR+ Sbjct: 265 AIEASATPILIVDVTQPAMPLIYVNRAFELVTGYSSQEAVGRNCRFLQG---HDREQPEL 321 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIGIANDITEQKK 524 + + + R R D W + + P+ + +G + ++G+ DITE ++ Sbjct: 322 EKIRTAIRERCPGYAI-LRNYRKDGSLFWNELYVAPVPDPHGGEPRYFVGVQKDITEIRQ 380 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 E + A D LTG+ NR +R+ + + N +V IDID +K++ND +G Sbjct: 381 YQEALERQANYDTLTGLANRNLLKERMQQAISEARRH-NWTFSVAFIDIDNFKRVNDSMG 439 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 + GD+++ L +R+ L+ D +ARL G+ F ++L S++ I +R +I P Sbjct: 440 HSAGDELIRLLGQRLQSCLRDGDTVARLGGDEFVLLLTSQSLDESIHTVVQRIRNTIINP 499 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702 + R++TVT SIG A++ + +L NA+ AMY AK G N+ + Sbjct: 500 FIITGRQLTVTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSNNFRFYAKEMNAELG 559 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 R+ ++ DL A+EN +L L Y P + + + +I+G+EALI+W HPK G I +F+ ++E Sbjct: 560 HRLSLENDLWHALENQQLVLHYQPQVCMRNSQIIGMEALIRWQHPKLGMIPPLQFIPLSE 619 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + +I I ++++E A + A PPI + +N++ + L +L ++ + + Sbjct: 620 DDGLIVPIGIWVMETAAHQNRQLQ-LAGYPPIRVAVNLSVRQLEQKDLVHCIEKTLQHSG 678 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P ++L +ES++M N E S + L R+ +G+ L+LDDFGT S LSYL +P + +K Sbjct: 679 LDPQCLELEITESMLMHNIEESIITLNRISDLGVQLSLDDFGTGYSSLSYLKRLPINRLK 738 Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + T I RSII +A ++E +IA+ + L GCD +Q + Sbjct: 739 IDKSFINDITTTYNDAIIARSIIALAHSLEIQVIAEGVESADQYAFLLENGCDEVQGYLL 798 Query: 941 ASPLGFNSILKLLKE 955 + P F + LL++ Sbjct: 799 SRPRPFEEMEALLRD 813 Score = 46.9 bits (110), Expect = 0.016, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 6/193 (3%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT--VIQHVLATG 394 A L P IF+ L N + L + + + + Sbjct: 69 ARELAPEIPFIFVSGTIGEETAIHSLKNGAADYIIKNNLSRLPSAVTSALERAEEKIMHK 128 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + + + I + D + L L + G L Sbjct: 129 RMERELENSNRLFRVFMQNLPAIAFIKDQQGQYIFANASTVDALQLPHEQIIGKHDTLL- 187 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 R + +Q+ + AD+ W++ P+ + +G+ G Sbjct: 188 -FPPQLAQEMRAAEQQTLAQGEA-IQHVRQFPLADDVKLWLLTTF-PVQDMDGNFNHIGG 244 Query: 515 IANDITEQKKSLE 527 I DITEQ+K+ E Sbjct: 245 IGIDITEQRKAEE 257 >gi|168186555|ref|ZP_02621190.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium botulinum C str. Eklund] gi|169295410|gb|EDS77543.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium botulinum C str. Eklund] Length = 961 Score = 552 bits (1423), Expect = e-154, Method: Composition-based stats. Identities = 144/569 (25%), Positives = 276/569 (48%), Gaps = 7/569 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIR 450 A + + ++ L + GS D +W+WDI ++ + + I G ++ ++ + Sbjct: 390 ALEKSKEKLEKGKQKYKLVIEGSNDAIWEWDIKENKFFMSNKWSKITGHSTYTDINENKK 449 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + I D N + + + + E R+ N W+ I+ + + ++ +++ Sbjct: 450 YFSKVIEEEDYKNIIDEFEKVLYEGQNCIDVECRILNKFNYQKWINIKGKALRDNKENVI 509 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + G DITE K++++ I A+ D+LTG+PNR ++L + I+ + + ++ Sbjct: 510 KIAGSITDITEGKEAIKRIEYLAYNDSLTGLPNRAAYLRYIYNIIQKVKENKKI-GAIIF 568 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +DID +K +ND LG G+++L + RI +L + RL G+ F I+ + I Sbjct: 569 LDIDNFKNVNDTLGHDYGNELLKRVNERISYVLTENEKFYRLGGDEFIIVQCGSYDERDI 628 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + K + + T S+G + + + + + KNA++AMY AK+ G N Sbjct: 629 ELLADKILKVFNKSFIVKNERVYTTVSLGISFFPNDSCDHNVLFKNADIAMYSAKNLGKN 688 Query: 691 HVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + ++E L A+E EL L + P + EI G+E L++W K Sbjct: 689 KYLVYNKDMSHDLIRRSQVEEGLRHAIERGELKLAFQPQVNANTGEIKGVEVLLRWKSKK 748 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 +G +S +EF++IAE+ +I +I ++L W + N+ I I +N++ L + Sbjct: 749 FGFVSPAEFIIIAEKSGLINSIGEWVLRESCLKKKQW-ELENLKDITISVNVSVIQLQQD 807 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + E ++ ++ KT P+ ++L +ESV+M + E + +L + IG+ + LDDFGT S Sbjct: 808 DFIEKLKRILEKTKLPPACLELEITESVMMESKETNLDILNSISDIGVKIALDDFGTGYS 867 Query: 869 LLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL +P + +K + S + + I+ II +A+ I +IA+ + + Sbjct: 868 SLSYLRMLPINKIKLDKSFIDTIHINKNEKFIVEGIIDLAQKIGFNVIAEGVELSEQLDV 927 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + CD IQ + + P+ + +LLK+ Sbjct: 928 LCKANCDEIQGYYFSKPVEEDKFKELLKD 956 >gi|24371939|ref|NP_715981.1| sensory box protein [Shewanella oneidensis MR-1] gi|24345777|gb|AAN53426.1|AE015481_9 sensory box protein [Shewanella oneidensis MR-1] Length = 1515 Score = 552 bits (1423), Expect = e-154, Method: Composition-based stats. Identities = 144/555 (25%), Positives = 275/555 (49%), Gaps = 18/555 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465 + + V + + P + I G + G + IH RD F Sbjct: 962 VLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKF-----LIHLAYSRQQRDLFN 1016 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 +I + ++ E +R + + + I + + G+ ++ + DITE+KK+ Sbjct: 1017 SIEQQLLRHK--HWAGEIWIRNKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKA 1074 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G Sbjct: 1075 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNI-VALLFLDLDRFKHINDSMGH 1133 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +GD +L ++ R+ ++ D +ARL G+ F IIL + + + K+ P Sbjct: 1134 HIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF 1193 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L ++ + ++ SIG + + + ++K A+ AMYHAK G N+ + + + + Sbjct: 1194 LLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATR 1253 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + ++ L A+ ++EL LVY P L + + GLEAL++W H + G IS +EF+ +AEE Sbjct: 1254 HMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEE 1313 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 MI I +++ + + + W + I + +N++++ L ++ ++ ++ + Sbjct: 1314 TGMINQIGHWVINQSCQQLAEWNE-LGFSDISMAVNLSARQLK-ADIISTIEVALAVSGL 1371 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K Sbjct: 1372 PAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1431 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + AI +II +A ++E ++A+ + + + L GCD +Q ++ Sbjct: 1432 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1491 Query: 942 SPLGFNSILKLLKER 956 PL LL++R Sbjct: 1492 KPLSAQDCQTLLQQR 1506 Score = 110 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 41/257 (15%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQGIFSDGERQS 408 + + + + + A L+ + Q F I + ER Sbjct: 781 YALLVNLTVKAPFYRTPFAYAFYVLFTLVSMGWALRWRKQKRSQQQEFETSIRASEERLK 840 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 LA+ SGD +WDW+I +V T + + H DR+ F+ L Sbjct: 841 LALWASGDGMWDWNIQEQQVYRTNTDIAVPQWNGHQLLHDNA------HPEDRERFKYEL 894 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLE 527 + R + E+R+ + ++ W++ R + + +N+ +R G +IT +K Sbjct: 895 TEHLQGRSPFFEVEYRIEHSPGKWVWILERGKVVETNAQERPIRMTGTTRNITSRKLIE- 953 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVL--- 583 ++ S +++ V+V +D + + +N Sbjct: 954 ------------------------NELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAI 989 Query: 584 -GIAVG---DDVLVSLT 596 G + G D L+ L Sbjct: 990 TGYSEGQISDKFLIHLA 1006 >gi|146309043|ref|YP_001189508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] gi|145577244|gb|ABP86776.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp] Length = 1244 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 148/559 (26%), Positives = 269/559 (48%), Gaps = 9/559 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + + ++ + + + V D+ + I G A G + L Sbjct: 674 RQQMQEELQQAATVFESTAEGVMITDLEQRITAVNRAFTEITGYAEAEALGQRPSLLAS- 732 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D+ + + G Q E R + + + + I + N++ I ++G+ Sbjct: 733 GQHDQAFYNAMWHCLATN--GHWQGEIWNRRKNGELYPEWLTISAVRNADNQITHFVGVF 790 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+ K + + A D LTG+PNR F +RL + LD S +D V+ +D+D++ Sbjct: 791 ADISSLKHAQARLDHQAHHDPLTGLPNRLLFENRLRSALDGSRAEDRA-GAVLFLDLDRF 849 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG VGD +L ++ R+ L+ D +ARL G+ F I+L + A Sbjct: 850 KQINDSLGHPVGDQLLRAIAARLKLQLRDIDTVARLGGDEFIILLPGLQQAEDADQVAQK 909 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P ++ E V+ASIG + + + ++KNA+ AMY +K +G N E + Sbjct: 910 LLDCFTAPFDIDHHEFFVSASIGISLYPKDGADVATLVKNADAAMYQSKAKGRNRSEFYT 969 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 S ++R+ ++++L A+E EL L Y P L + +VG EAL++W HP +G+I Sbjct: 970 RSLTFQVNERMAMEQELRRALERDELCLYYQPKFCLRSQRLVGAEALVRWPHPVFGDIPP 1029 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AEE +I + ++L+ R + W++ + +N+A L L + Sbjct: 1030 DRFIPVAEESGLILPLGDWVLQEACRQLQCWQENNQGFG-TLSVNLAGAQLHQPSLVSRI 1088 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 L+ + + ++L +E+ +M + +L RL+++G+ L +DDFGT S LSYL Sbjct: 1089 GELLQQHGLAAGLLQLEITENFIMNQAGDALDILHRLKELGVQLAIDDFGTGYSSLSYLK 1148 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + G +AI R+II + ++++ T+IA+ + + L GC Sbjct: 1149 RLPLDVLKIDQSFVRGLPDDPHDLAITRAIIALGQSMQLTVIAEGVETKAQELCLAAEGC 1208 Query: 933 DYIQDSHVASPLGFNSILK 951 IQ ++ PL + + Sbjct: 1209 LQIQGYVISRPLSAEAFTR 1227 Score = 83.5 bits (205), Expect = 2e-13, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 9/138 (6%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRN 451 Q + S + V I W+ + +P +LG Sbjct: 299 REALEQELRSREQHFRDMVESLSAITWEAESSGLTYTYVSPHAEKLLGYPLEDWL-QPGF 357 Query: 452 WLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 W ++H +D+ L + E+R+ AAD W+ + + + + Sbjct: 358 WQRHLHPDDQQR---ALRRCLEQCAAGEDHALEYRLLAADGHVVWVRDIVTLLQRGDQQV 414 Query: 510 LRYIGIANDITEQKKSLE 527 +R G+ DI+E K++ Sbjct: 415 VR--GLMIDISEAKQTEH 430 Score = 64.2 bits (155), Expect = 1e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 8/153 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLAS 442 V++ + Q + E+ + A S D + + + I G Sbjct: 540 VVVVRDISQLKATQQQLQISEEKFARAFHASPDGLLISRMRDGLLIEANDGFTRITGYQL 599 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + L DR + R RVR Q + +P Sbjct: 600 DEVANQSTLSLGIWADPQDRQRLVERIRQHGSVR----DMIARVRTKSGQLRLCELSAQP 655 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + G + IA DITE+++ E + A Sbjct: 656 L--PVGGEDCLLTIARDITERQQMQEELQQAAT 686 >gi|323699258|ref|ZP_08111170.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio sp. ND132] gi|323459190|gb|EGB15055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio desulfuricans ND132] Length = 826 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 152/572 (26%), Positives = 269/572 (47%), Gaps = 11/572 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPI 449 + + ER D W+ I D +P I G Sbjct: 236 QREKLVRVLQESEERYRTIADFGYD--WEIWIGTDNSIHYCSPACQRITGYPPERFFEDP 293 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 I +D+D + L R L +FR+ AD + W+ + R +S G Sbjct: 294 GLVREIIINDDQDAWDAYLVEADSDRGDSL--DFRILTADGKVRWLGVVGRSVSGIGGKP 351 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 L DIT++K E + A D LT + NR LDRL + + +N V+ Sbjct: 352 LGMRLSFRDITDRKTMEEQLRHQALHDPLTNLANRTLCLDRLGQAMRRAKRRENYFFAVV 411 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG GD VL R+ ++ D ++R G+ F ++L ++ + Sbjct: 412 FLDLDRFKIINDSLGHRFGDMVLAETAIRLSGEMRGLDTVSRFGGDEFVLLLDELSSPGE 471 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +R+ ++ P E+ TAS G + ++L++A +AM+ AK G Sbjct: 472 AIRIIKRVRERLSEPFRFNGNEVQTTASFGIVLSPVVDGKAPDVLQHANIAMHRAKEAGR 531 Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + F D++ ++ D+ + N E ++VY PI+ L ++VG EAL +WDHP Sbjct: 532 NRFKVFTERMLETAVDQLTLENDMRRGLANDEFHVVYQPIMDLNGSDVVGFEALARWDHP 591 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLL 806 G I +EF+ +AEE +I + ++L++ R + WR+ IF+ +N++SK Sbjct: 592 DRGAIPPAEFIPMAEESGLIVELGEWVLQQALRTLAGWRNDTPGVDDIFMSVNLSSKQFA 651 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 EL + + + + PS +KL +ES +MGNPE S +L RLRK G+ ++DDFGT Sbjct: 652 RIELDKIVVRTLERYGLPPSCLKLEITESSIMGNPESSLRILNRLRKAGVRFSIDDFGTG 711 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LS L +P DT+K + + ++ + + I++++I + +++ ++A+ + + Sbjct: 712 YSSLSQLQQLPVDTLKVDRTFISRMRTDPENMEIVKAVIALGHSLDLNVVAEGVENPEQL 771 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L + C+ +Q + P+ ++L++R Sbjct: 772 CSLLNLSCNCVQGFYFHEPMNAALAREMLRQR 803 >gi|330969542|gb|EGH69608.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1254 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 686 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 744 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 745 ESEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 802 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 803 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 861 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 862 KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDESREAALNRAIH 921 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 922 VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 981 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 982 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 1041 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1042 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1100 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1101 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1160 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1161 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1220 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ Sbjct: 1221 EHDCDEVQGYLFGRPMPPAQFEA 1243 Score = 72.7 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 11/162 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 537 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 596 Query: 444 S-----MHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRV-----RAADNQF 492 I N + + +LD R R + R+ AD + Sbjct: 597 WIIQNGWSAAIANPQQIVGFDALMSRIDKVLDKPQELARLREEVTTRMFLFDCLRADGRK 656 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + +R+ + +G+ G+ DI++Q+++ + + A Sbjct: 657 IPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 698 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 404 ILSIGDITSRKQVELSLLDRESFWSDVVQTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 463 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 +H + +H +D +++ + L LQ R R ++ + IR + Sbjct: 464 SELHAMGEFFWEVLLHPDDARHYQDMRLRQRHHGHNELLQSVLRFRDRESNWRSFDIREQ 523 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DITEQ + S + A Sbjct: 524 ALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 564 Score = 41.1 bits (95), Expect = 0.91, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 34/188 (18%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR- 427 A + G LI +L+ + +++ + + R G+G + D+ + Sbjct: 230 LAPLIGKCLIGVLLSILPLIALMSLRRRQRQMLQSHRRYRDIFEGAGVAICVMDMSGLQE 289 Query: 428 ------VTTTPDIATILGLASGSMHGPIRNW---------LPYIHINDRDNFRT------ 466 V D +L S+ ++ L + I R+ Sbjct: 290 QLEALDVRNGEDFERLLKSQPASLKRLLQQLRISELNEVALSLLDIEHREQAWQPLIEGE 349 Query: 467 ----------ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 ++ + + + RL+ E + A Q + + +R + + GD I Sbjct: 350 SRSRPGVGIPVIQAVLAGQ-PRLELEICLTRAGGQDQHLWLVMR-LPETRGDFDAVILSI 407 Query: 517 NDITEQKK 524 DIT +K+ Sbjct: 408 GDITSRKQ 415 >gi|39995644|ref|NP_951595.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|39982407|gb|AAR33868.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] Length = 682 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 151/631 (23%), Positives = 289/631 (45%), Gaps = 17/631 (2%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV--------GGLVLIVILIGFTVIQHV 390 L + + + G +++ P V L ++ I Sbjct: 43 LFPLDHLAMAMGVEGYAGIALTDAAGNVLGPLAVLSRRPLGDSELAETMLRIFAARASAE 102 Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 L Q + + ++ D R + + + +G + G Sbjct: 103 LERTKAEQARREQLHFLQVLIDSIPHPIFYKDADRRYIGCNAALESFIGRTREEIIGKT- 161 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + I R +D + G Y+ + D +I N++G I Sbjct: 162 --VFDIGAEGRARICDAVDRKLLANGGVESYDSTMIHTDGSIRDIIFSKTVFGNTDGSIG 219 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 +G DITE+K++ E I A+ D LTG+PNR DR++ +L + + V+ Sbjct: 220 GIVGTILDITERKRAEEAIQQLAYFDALTGLPNRTLLRDRVSQLLSQARREGGG-FGVLH 278 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D++K +ND LG A GD +L ++ RI ++ D +ARL + F +IL + + Sbjct: 279 LDVDRFKGVNDSLGHACGDVLLSTVAGRIASSIRESDTVARLGSDEFVVILPGVGHEEDV 338 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + + + PI + +I TASIG A + + ++ +LKNA++AM+ AK GG+ Sbjct: 339 VAVVRKIVEELNRPIVIQGNDIFCTASIGIAIYPTDGSSADILLKNADMAMHKAKEFGGD 398 Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + +R+ ++ L A+E E L Y P++ + IVG+EAL++WD P+ Sbjct: 399 GYQFYSSELNHRAMERLTLETSLRRALERREFLLHYQPLLGIGSGRIVGVEALLRWDSPE 458 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S + F+ +AEE +I I ++L + + + + + +N++++ + Sbjct: 459 LGMVSPARFIPLAEETGLIVPIGEWVLRSACEQLRALHE-LGYTELCVSVNVSARQFRHD 517 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 C + A+++ P ++L +ESV+M E ++ +L +L+++G+SL +DDFGT S Sbjct: 518 GFCAMVAAVLAAVGLDPRYLELELTESVIMERSETAKGILRKLKQMGVSLAIDDFGTGYS 577 Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL + P D +K + + + + AI +I+ +A + ++A+ + + Sbjct: 578 SLSYLKHFPIDRLKIDRTFVKEVTVDQDNAAIAEAIVALAHVLNLDVVAEGVETAEQLAF 637 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L + CD +Q H+A PL ++L+ L+ R Sbjct: 638 LAALRCDVVQGYHIARPLPPRNLLEFLEARQ 668 >gi|291571958|dbj|BAI94230.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 1091 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 148/561 (26%), Positives = 254/561 (45%), Gaps = 15/561 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP---YIHI 458 + S A S + D D P I G + + G L Sbjct: 537 DQLKMFSRACDQSPVSIVITDSEGDIQYVNPKFEEITGYKAAEVMGQNPRILKSGYTTEP 596 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + ++ EF + + + W I PM + G I +I + D Sbjct: 597 E----YDVLWKQITSGKQ--WSGEFHNKRKNGELFWEHASICPMRDEEGYITHFIAVKED 650 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT+QK + E + A D LT +PNR +RL + + + + VM ID+D +K Sbjct: 651 ITQQKHNEEILAHQANYDALTDLPNRTLVFERLRQAIIQAQVN-HSNVAVMFIDLDHFKN 709 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L R+ L+ D + RL G+ F +I+ + ++ ++ A + Sbjct: 710 INDTLGHELGDFLLKEAGMRLKGCLRTTDTVGRLGGDEFLVIIPNLDDLIQAEYIATQVL 769 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P NL E ++ASIG AS+ +S +++NA+ MY AK G N F + Sbjct: 770 GVLGEPFNLCGEEAFISASIGIASYPQDGNNASTLVRNADTGMYAAKQEGRNVFAFFTQN 829 Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + I + L A+ EL +VY P I L +IVG EAL++W +P+ GNI + Sbjct: 830 MNDEAQSRIIIENHLRHAINRDELSVVYQPFIHLATAQIVGAEALMRWYNPELGNIRPDQ 889 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE +I + ++L + +++ +W Q +++ +N++ + L L + Sbjct: 890 FIAIAEESRLIVDLGEWILSQACQEVATWHQQ-GNSGLWVAVNMSPRQLRTPNLVNVIIE 948 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 I+ S ++L +E ++ + L+ +L + I L +DDFGT S LSYL Sbjct: 949 AIANNGLSSDCLELEITERSLVAEVPGVQSLIKQLHSLKIRLAIDDFGTGYSSLSYLKRF 1008 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PF +K + S ++ + IA+++++I MA + ++A+ I + L GCDY Sbjct: 1009 PFSVLKIDKSFISDLPDDQDAIALVKTMITMAHGLGLVVVAEGIETSAQLDFLCNQGCDY 1068 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + PL L++ Sbjct: 1069 GQGYLFSKPLPPAEFRAYLQK 1089 Score = 61.1 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W ++ + + + ILG ++ ++L +I+I+D ++ + ++ Sbjct: 316 GSWCLNMNTGEMIISDQLYHILGENPQNVSINFEDFLNHIYIDDLYSWVQTYSQSLFTQQ 375 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + +R+ D+ HW+ + P+S+ + I I +I + + I A Sbjct: 376 N-YRLNYRIIQPDSSMHWVSQQSTPVSDRHNKITHITSIIQEIDSHQIANPSITAEA 431 Score = 51.1 bits (121), Expect = 9e-04, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 23/144 (15%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q + + R + S + + D + P + G + + G Sbjct: 421 QIANPSITAEAALRESEARLRTIISTSTNGLVVVDCQGRALFINPAAEALFGRQARELEG 480 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + + E + D + + +R+ +S Sbjct: 481 ---------------------EMIGIPLVTKESTELEIFRHDGKLKIVRMRVVEISWE-- 517 Query: 508 DILRYIGIANDITEQKKSLEGILC 531 Y+ DIT+ KK+ + + Sbjct: 518 QETAYLASLTDITDFKKTEDQLKM 541 >gi|218441831|ref|YP_002380160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] gi|218174559|gb|ACK73292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] Length = 1027 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 152/565 (26%), Positives = 272/565 (48%), Gaps = 11/565 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 G + A S V D + G + G L I Sbjct: 467 GAQKQLKILKQATEQSPVSVIITDAEGHIEYVNRKFEKLTGYTRQEVIGKNPRLLKSGKI 526 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + +D ++ + + + EF + + + W I P+ N G I +I I D Sbjct: 527 S-QDQYKQLWRTLTSGQ--EWHGEFHNQKKNGELFWESASISPIKNEEGVITHFIAIKED 583 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT +K + A D LTG+PNR +DRL + + + R VM ID+D++K Sbjct: 584 ITRRKAQDRILAYQANYDALTGLPNRFLAIDRLKLAILQAERQEQ-RVAVMFIDLDRFKN 642 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG GD +L + R+ + L+ D +ARL G+ F II+ + A + Sbjct: 643 VNDTLGHEYGDLLLKQVAERLKKCLRKSDTVARLGGDEFLIIIPNLKQPSHCKGIAKKIL 702 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 S+ P NLLE E ++ASIG + + +++NA+ AMY K G N + + + Sbjct: 703 SSLEKPFNLLEEEAFISASIGITLYPDDGDDVNALMRNADTAMYLGKRGGRNDFKFYTLG 762 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++R I+ L A++ E+YLVY PI+ L E+++G EAL++W++P+ G +S + Sbjct: 763 MNETNRTRIIIENLLHQALKKKEIYLVYQPIMELKTEKVIGAEALLRWNNPQLGQVSPDQ 822 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE +I + +++ + ++++ W+ Q PI + +N++ + D++L + + Sbjct: 823 FIPIAEETGLINQLGAWVISQACQEVVQWKAQG--TPISVAVNLSPRQFRDSKLLKIITD 880 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 I+ + ++L +E +++ + S+ +L +L ++ L++DDFGT S LSYL Sbjct: 881 AIAVNGITNHDLELEITEKLLLEDSPGSQGILSQLHQMNFPLSIDDFGTGYSALSYLIKF 940 Query: 877 PFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PF+ +K + S +T T + A+ +++II M+ + +IA+ + + L GCDY Sbjct: 941 PFNRLKIDRSFITDMTHSQKAMGLVKTIIAMSHGLNLQVIAEGVETSEQLNSLKSQGCDY 1000 Query: 935 IQDSHVASPLGFNSILKLLK-ERFP 958 Q + PL L+ + P Sbjct: 1001 AQGYFFSRPLTGEEFRYYLQLNKNP 1025 Score = 48.0 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 23/149 (15%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 VI+ + A + + ER S + + + + D + P + G Sbjct: 350 IAVIRDISARKHTELALRESEERLSTIISTNPNGLLILDREGKVLFVNPAAEILFGRPKK 409 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G I L V E + + IR + Sbjct: 410 DLMGQILG----------------LPIIVNNYS-----EIEILQPTGKMVIARIRQVKIL 448 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532 + ++ D+T+ K + + + Sbjct: 449 WEEKEA--FLASLVDVTDLKGAQKQLKIL 475 >gi|114561602|ref|YP_749115.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114332895|gb|ABI70277.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 1486 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 144/550 (26%), Positives = 281/550 (51%), Gaps = 10/550 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + + V ++ + P + I G + G +L + R+ + ++ Sbjct: 935 VLFSMNEAVVVGELDYQIRSINPAFSRITGFKHRDVVGKHFLFLT-MGKQSREFYNSVET 993 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + ++ E +R + + + I + ++ G+ ++ + DIT +KK+ E + Sbjct: 994 QLLRHK--HWAGEIHIRTRNRRGILAWLEINQVIDNKGETSHFVAVFTDITARKKAEEDL 1051 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+PNR F DRL + + +++ ++ +D+D++K IND +G +GD Sbjct: 1052 RVLANFDPLTGLPNRTLFQDRLNQAVTKAHRANSI-VALLFLDLDRFKHINDSMGHHIGD 1110 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L ++ R+ ++ D +ARL G+ F IIL + A + + P L + Sbjct: 1111 LLLKAVAHRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATIIAEKVLHAFQTPFLLDD 1170 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707 + +T++ SIG + + ++ ++K A+ AMYHAK G N+ + + + + + V + Sbjct: 1171 KILTISPSIGISLYPEDADDTTSLIKYADTAMYHAKSLGRNNFQFYTEQLNQYATRHVQL 1230 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L A++++ELYLVY P + E+I+GLEAL++W+ P+ G IS EF+ +AEE +I Sbjct: 1231 EAGLKKAIQDNELYLVYQPKYDVKTEKIIGLEALMRWESPELGFISPVEFIPLAEETGII 1290 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I + +++ + W Q I I +N++++ L ++ ++ ++ + S Sbjct: 1291 NQIGHWAIQQACNQLAQWHQQ-GFEHISIAVNLSARQLK-ADIISTIEVALAVSGLPASA 1348 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K + Sbjct: 1349 LELELTESMIMGNPQDSVTVLSQLKALGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1408 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI +II +A ++E ++A+ + + + L GCD +Q ++ PL Sbjct: 1409 VRDITEDPDDAAITSAIITLAHSLELNVVAEGVETQAQLNFLREGGCDQVQGFLLSKPLS 1468 Query: 946 FNSILKLLKE 955 L LL + Sbjct: 1469 AVDCLALLTQ 1478 Score = 115 bits (287), Expect = 5e-23, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 8/173 (4%) Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 + + + + + + GL++I+ + + V F I + ER LA+ Sbjct: 758 VNVSVVPPMYMTSTAYILYVTVGLLIIIWFF-YARQKKVAKQREFDNSIRASEERLKLAL 816 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 SGD +WDW+I D+V T + + S + + I DR + +L+ Sbjct: 817 WASGDGMWDWNIKDDKVYRTNMVEPM------SFSLKDQLLIKNIDPEDRPRVQKLLNDH 870 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523 + + E+RV Q+ W++ R + + +SN +R G DIT +K Sbjct: 871 LNGESEFFEAEYRVETKPGQWAWVLDRGQIVERDSNNIPVRMAGTHKDITSRK 923 >gi|313201890|ref|YP_004040548.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441206|gb|ADQ85312.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 821 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 154/555 (27%), Positives = 273/555 (49%), Gaps = 15/555 (2%) Query: 410 AVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FR 465 A+ S + D+ + + G +S G +L +DR+ Sbjct: 265 AIEASATPILIVDVTQPAMPLIYVNRAFELVTGYSSQEAVGRNCRFLQG---HDREQPEL 321 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIGIANDITEQKK 524 + + + R R D W + + P+ + +G + ++G+ DITE ++ Sbjct: 322 EKIRTAIRERCPGYAI-LRNYRKDGSLFWNELYVAPVPDPHGGEPRYFVGVQKDITEIRQ 380 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 E + A D LTG+ NR +R+ + + N +V IDID +K++ND +G Sbjct: 381 YQEALERQANYDTLTGLANRNLLKERMQQAISEARRH-NWTFSVAFIDIDNFKRVNDSMG 439 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 + GD+++ L +R+ L+ D +ARL G+ F ++L S++ I +R +I P Sbjct: 440 HSAGDELIRLLGQRLQSCLRDGDTVARLGGDEFVLLLTSQSLDESIHTVVQRIRNTIINP 499 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702 + R++TVT SIG A++ + +L NA+ AMY AK G N+ + Sbjct: 500 FIITGRQLTVTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSNNFRFYAKEMNAELG 559 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 R+ ++ DL A+EN +L L Y P + + + +I+G+EALI+W HPK G I +F+ ++E Sbjct: 560 HRLSLENDLWHALENQQLVLHYQPQVCMRNSQIIGMEALIRWQHPKLGMIPPLQFIPLSE 619 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + +I I ++++E A + A PPI + +N++ + L +L ++ + + Sbjct: 620 DDGLIVPIGIWVMETAAHQNRQLQ-LAGYPPIRVAVNLSVRQLEQKDLVHCIEKTLQHSG 678 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P ++L +ES++M N E S + L R+ +G+ L+LDDFGT S LSYL +P + +K Sbjct: 679 LDPQCLELEITESMLMHNIEESIITLNRISDLGVQLSLDDFGTGYSSLSYLKRLPINRLK 738 Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + T I RSII +A ++E +IA+ + L GCD +Q + Sbjct: 739 IDKSFINDITTTYNDAIIARSIIALAHSLEIQVIAEGVESADQYAFLLENGCDEVQGYLL 798 Query: 941 ASPLGFNSILKLLKE 955 + P F + LL++ Sbjct: 799 SRPRPFEDMEALLRD 813 Score = 48.0 bits (113), Expect = 0.008, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 6/193 (3%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT--VIQHVLATG 394 A L P IF+ L N + L + + + + Sbjct: 69 ARELAPEIPFIFVSGTIGEETAIHSLKNGAADYIIKNNLSRLPSAVTSALERAEEKILHK 128 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + + + I + D + L L + G L Sbjct: 129 RMERELENSNRLFRVFMQNLPAIAFIKDQQGQYIFANASTVDALQLPHEEIIGKHDTML- 187 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 R + +Q+ + AD+ W++ P+ + +G+ G Sbjct: 188 -FPPQLAQEMRAAEQQTLAQGEA-IQHVRQFPLADDVKLWLLTTF-PVQDMDGNFNHIGG 244 Query: 515 IANDITEQKKSLE 527 I DITEQ+K+ E Sbjct: 245 IGIDITEQRKAEE 257 >gi|330811842|ref|YP_004356304.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379950|gb|AEA71300.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1282 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G A + + N L + Sbjct: 714 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSQVLDQLPNMLT-V 772 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R +L + + E ++ + + + + I + + GD+ Y+ Sbjct: 773 DEQQEAHLRYVLKQLQQHST--WEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 830 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL T L + +M +D+D++ Sbjct: 831 SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSADR-QKTWVVLMFLDLDRF 889 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + + Sbjct: 890 KPINDSLGHAAGDRMLKEMATRLLGCVADDDTVARMGGDEFTLLLQPRASREMALNRAIN 949 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 950 VAEQILASLVRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1009 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP+ G Sbjct: 1010 QFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1069 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + +++ R + +W P + +NI+++ D +L Sbjct: 1070 LVPPGDFIPVLEELGLVVDVGDWVIAEACRQLRTWHQAKVRVP-KVSVNISARQFSDGQL 1128 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ T P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1129 GTRIANILRSTGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFGTGYSSL 1188 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + + L Sbjct: 1189 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1248 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ Sbjct: 1249 EHGCDEVQGYLFGRPMPATRFEA 1271 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + V S+ + +R + D+++ D +P + +LG + Sbjct: 565 IGVAKDVTEQIEASESLRDSEQRYRMLAESISDVIFSTDNKLSLNYVSPSVQAVLGYTAD 624 Query: 444 SMHGPIRNWLPYI-HINDR-------DNFRTILD--SFVGYRRGRLQYE---FRVRAADN 490 + W I + D LD + R ++Q + F AD Sbjct: 625 WIFQN--GWQSIIANPQQLTGIYSLMDRVSKALDKPEQLAELRNQMQTQLFLFDCLRADG 682 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G +G+ DI++Q+++ + + A Sbjct: 683 RKIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLRMAAT 726 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 4/151 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 I + + + S V D ++ D++ R + + + LG Sbjct: 432 ILSISDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYDR 491 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIR 500 +H + +H +D D++ + + LQ + R R + ++ IR + Sbjct: 492 TELHQMGEYFWEILLHSDDADHYHGLRQAQRRGGYTQLLQCQLRFRHRNGKWRCFDIREQ 551 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + + + + R IG+A D+TEQ ++ E + Sbjct: 552 ALARDRDNQVTRIIGVAKDVTEQIEASESLR 582 >gi|82701763|ref|YP_411329.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC 25196] gi|82409828|gb|ABB73937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196] Length = 699 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 148/585 (25%), Positives = 277/585 (47%), Gaps = 9/585 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 V+ + S + + V S D + D+ + G S Sbjct: 113 SDIVLVWSFRDITERRQGESYKAQLAAIVESSNDAIIVKDLNGIITGWNAAAEELFGYRS 172 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + G + L I + + I++ +R R + + + I P+ Sbjct: 173 GEIIGS--SILTLIPPDRLEEEDRIMNLVKSGKRTDHFETVRW-GKGKKSIDVSVTISPV 229 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +S G+I+ IA DIT++K+S E I A D LTG+PNR F DR+ ++ ++ Sbjct: 230 KDSAGNIIGASKIARDITQRKESQERIEYLAHYDLLTGLPNRALFTDRMRIAIENASRYA 289 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 R ++ +D+D++K IND LG A+GD +L ++ R+ ++ D ++RL G+ F ++L Sbjct: 290 -FRLALLFVDLDRFKLINDSLGHAIGDKLLKAVAERMQSTVRQADTVSRLGGDEFVVLLG 348 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + A A + ++ P + + E+ +TAS+G + + S + +++NA+++MY Sbjct: 349 RIHTATEAARVAEKLIAVLSQPYQIEQHELLLTASVGISIYPDSGKDVNSLMRNADVSMY 408 Query: 683 HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G N + + +R+ ++ DL A+ E++ VY P + L +VG+EA Sbjct: 409 SAKGQGRNRYQFYSEDLTSGADERLRLEYDLRSALARDEIFPVYQPQLELATGRVVGVEA 468 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G +S + F+ +AE+ +I ++ +L W +Q I +N+ Sbjct: 469 LMRWKHPERGLVSPASFIPVAEDSGLILSLGEHILRESCLQARQWHEQQGFEG-TIAVNV 527 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ N+ + + ++ + SP ++L +ESVVM E + + L GI L + Sbjct: 528 SAVQFRQNDFTDVVLRALADSGLSPECLELELTESVVMHGVESATQKMCFLESRGIKLAI 587 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL D +K + S + AI+R+ + M +++ ++A+ + Sbjct: 588 DDFGTGYSSLSYLRQFAIDRLKIDRSFVRDLPQDTDAKAIIRATVAMGRSLGLRVMAEGV 647 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 E + L + CD Q A P+ + LK R P + + Sbjct: 648 ETEGQAEYLRSVQCDESQGYLYARPMRPDDFEAWLKGRKPDFRGS 692 Score = 38.8 bits (89), Expect = 4.6, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 40/153 (26%), Gaps = 38/153 (24%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-----DRVTTT-----------PDIATILGLAS 442 + A+ + D + D +++ ILG + Sbjct: 6 ELNYSLSVLKAAIEATVDGLLVTDRRGKVLCYNQLYVNMWPIPGELLAHARHQAILGYCA 65 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL--QYEFRVRAADNQFHWMIIRIR 500 G + D + F ++ +EFR + + R Sbjct: 66 GQLR-------------DPEQFLRSIEEIYATLAPESFNVFEFR----NGRVF---ERCA 105 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + G + + DITE+++ A Sbjct: 106 KVKTLEGSDIVLVWSFRDITERRQGESYKAQLA 138 >gi|117926670|ref|YP_867287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117610426|gb|ABK45881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 834 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 146/586 (24%), Positives = 269/586 (45%), Gaps = 16/586 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGE---RQSLAV---LGSGDIVWDWDIVRDRVTTTPD 433 + + Q + + R L + + + D + P Sbjct: 228 ATVAQRTAALKTSNEQLKQQMIEREQAQHRLRLTAGVFENTSEAIIITDAANRVMEVNPA 287 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 I G + + G ++ H + + + + G+ Q E R + + + Sbjct: 288 FVRITGYPADEVIGRDPGFMKS-HRHTHEFYAEMWKKIWQ--TGQWQGEIWDRRHNGEIY 344 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + I + + G ++ IGI +DI+ K + E + AF D LT +PNR F RL Sbjct: 345 PKWLTINAVYDERGHLVNCIGIFSDISRLKATEERLEQLAFFDCLTKLPNRAHFQSRLDH 404 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L + N + ++ ID+D +K IND +G GD +L+ +RI ++ D +AR+ Sbjct: 405 ALTAANRRQN-KVGLIFIDLDHFKHINDSMGHNAGDQLLIEAAKRIQSCVREEDTVARMG 463 Query: 614 GNRFGIILISENNSLKIAD-FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F IIL ++ K+ A+ + +S PI L ++++ + S+G A + ++ Sbjct: 464 GDEFTIILADLTDTAKVMTNVALTILESFTHPIVLEDKKLFIGCSLGMAIYPDDSGNAAL 523 Query: 673 MLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 ++K+A+ AMY AK G N + +++ R+ ++ +L A+++ L Y P + Sbjct: 524 LIKHADTAMYRAKESGRNRYSFYTAEMNAQAQSRISLESELRYAIDHKAFELYYQPKVDA 583 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 EIVG EAL++W HP G IS ++F+ IAEE +I AI ++E + + Sbjct: 584 HSSEIVGFEALLRWIHPTEGVISPNQFIPIAEESGLIAAIGNQVVEMACQGLQRINRCTP 643 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 P+ + IN++ + L + L ++ +++L +ES + E+S LL Sbjct: 644 K-PLPVAINLSVRQLRQDNLVNYFSQTLANYGIEAEQLELEVTESFLAKPIEKSAALLQA 702 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKN 908 L ++G + +DDFGT S LSYL P T+K + S + ++ I+++II MA Sbjct: 703 LHQLGYKIAIDDFGTGYSSLSYLKNFPIHTLKIDRSFVMEVAHNQESRTIVQAIISMAHA 762 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + ++A+ + + L +GC +Q H A P + IL++L Sbjct: 763 LGYDLVAEGVETAAQVNVLQGLGCGIMQGFHYARPAPLHEILEILS 808 Score = 46.5 bits (109), Expect = 0.022, Method: Composition-based stats. Identities = 41/361 (11%), Positives = 94/361 (26%), Gaps = 78/361 (21%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 L Q S R + + D+ + +LG + Sbjct: 58 LRLEKAKQVQESALARFEALFNSAPEGFILIDVSGMVLECNHTTLEMLGCKREDLIRKP- 116 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + ++HI D+ F SF E R+ + + Sbjct: 117 -FSAFVHIEDQPKFYASYPSFFK-STYPKPIEIRLIHK----------GSAFKHKDH--- 161 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDN---LTGIPNRQSFLDRLTTILDLSATDDN-LRP 566 ++T + + + + DN L I N + L L + Sbjct: 162 ---SFIAELTGCSTLKQDLFKDLYHDNPFILVSIYNINA-HKLLERELADAKQAAELANH 217 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR----------IGELLKFPDILA---RLS 613 ++ D + ++ +R + + + + RL+ Sbjct: 218 ALL----------------ESHDKLEATVAQRTAALKTSNEQLKQQMIEREQAQHRLRLT 261 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 F + + ++ I D A + + + + + E+ Sbjct: 262 AGVF----ENTSEAIIITDAANRVMEVNPAFVRITGYP------------------ADEV 299 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 + M +H + E ++ + ++ N E+Y + I + DE Sbjct: 300 IGRDPGFMKSHRHTHEFYAEMWKKIWQTG---QWQGEIWDRRHNGEIYPKWLTINAVYDE 356 Query: 734 E 734 Sbjct: 357 R 357 >gi|237801442|ref|ZP_04589903.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024301|gb|EGI04358.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1254 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L Sbjct: 686 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLTV- 744 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +++ + + R G + E R+R + + + + I + + GD+ Y+ Sbjct: 745 -ETEQEAQMRHILKQLDGR-GTWEGEIRLRRRNGEHYPAWVGITAVVDDEGDLASYVCFF 802 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 803 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAER-QKAWVVLMFLDLDRF 861 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L Sbjct: 862 KPINDSLGHAAGDRMLQEMATRLLACVDIDDTVARMGGDEFTLLLQPAITREAALNRAIH 921 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK G N+ Sbjct: 922 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKECGKNNF 981 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 982 QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1041 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1042 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1100 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M E + +L L+ +G+S+ +DDFGT S L Sbjct: 1101 GKRIAGILEQTGLSPACLELELTESILMREVEEAMHILDGLKNLGLSIAVDDFGTGYSSL 1160 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1161 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1220 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 + GCD +Q P+ Sbjct: 1221 QHGCDEVQGYLFGRPMPPGQFEA 1243 Score = 72.7 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 21/167 (12%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D + D +P + LG ++ Sbjct: 537 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGLLDINYVSPSVERALGYSAD 596 Query: 444 SM-----------HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-----RA 487 + + + + +L R R + R+ Sbjct: 597 WIVQNGWSAVLANRQQLAGFDALM-----SRIGKVLKKPRELARLRDEVTTRMFVFDCLR 651 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 AD + + +R+ + + +G G+ DI++Q+++ + + A Sbjct: 652 ADGRKIPVELRVVLVWDEHGHFEGIFGVGRDISQQRRAEKDLRMAAT 698 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 I + + + S V D ++ D++ R + + LG ++ Sbjct: 404 ILSIGDITSRKQVELSLQDRESFWSDVVRTVPDHLYVQDVLSQRMIYSNHHFGHTLGYSA 463 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + +H D +++ + L LQ R R + N + +R + Sbjct: 464 PELRAMGEFFWEVLLHPEDAKSYQDMRLRQRHHGHNELLQSVLRFRDSQNNWRSFDVREQ 523 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + +S + R IGIA DITEQ + S + A Sbjct: 524 ALAWDSEHRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 564 >gi|297538651|ref|YP_003674420.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297257998|gb|ADI29843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylotenera sp. 301] Length = 965 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 143/583 (24%), Positives = 258/583 (44%), Gaps = 16/583 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I LA+ + + S + + D + P G Sbjct: 387 IAIIEQYADLASIAIERDRAESELTIAATAFQSQESLLITDANCIILRVNPAFTQSTGYP 446 Query: 442 SGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + G + +H D + + DS ++ G Q E R + + + + I Sbjct: 447 ADEVIGKNAYMFKSNLHPAD--FYLEMWDSI--HKTGAWQGEIWARRKNGEVYPKWLTIS 502 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 +S +G + Y+G DIT++K + E I AF D+LTG+PNR+ +DRL L SA Sbjct: 503 AVSGKDGVVSHYVGSGIDITQRKAAEEEIRNLAFYDSLTGLPNRRLLIDRLKHALAASAR 562 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + V+ +D+D +K +ND LG VGD +L + +R+ + D +AR+ G+ F +I Sbjct: 563 S-KMYGAVLFLDLDNFKTLNDTLGHDVGDLLLQQVAKRLSATSREDDTIARIGGDEFVVI 621 Query: 621 LISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 L + ++ + + L + E + SIG + + E+LK Sbjct: 622 LENLSDKPMEAAEHAKVICDKYLSILNESYTLSKYECLSSPSIGVTLFNDHQSGIEELLK 681 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 A++AMY AK G N + F + V + +L +A+E + L + + + Sbjct: 682 QADIAMYQAKKAGRNAIRFFDPKMQDAINHLVNLDRELRVAIERQQFQLYFQVQVDIA-G 740 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +G E LI+W HP+ G I F+ +AE+ +I I ++L+ + +W +A+ Sbjct: 741 RPLGAEVLIRWIHPEHGTIFPPTFIPLAEDNGLIFTIGKWVLDMACAQLKAWELEASTRN 800 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + IN+++K + + ++ I +P+ +KL +ES+++ N E + + L++ Sbjct: 801 LKLSINVSAKQFHQADFIKQVKTAIKNHAINPAMLKLELTESMLLDNIEDTIRTMNILKE 860 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 IGI +LDDFGT S L YL +P +K + S + AI+R+ I MA+ + Sbjct: 861 IGIQFSLDDFGTGYSSLQYLKQLPLTQLKIDKSFVHDIAVDNSDQAIVRTTIVMAQTLNL 920 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +IA+ + L GC Q P+ + +K Sbjct: 921 EVIAEGVETIEQRNVLINSGCTCFQGFLFGQPMPIEQFVDQVK 963 >gi|317152638|ref|YP_004120686.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316942889|gb|ADU61940.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 958 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 139/570 (24%), Positives = 268/570 (47%), Gaps = 14/570 (2%) Query: 392 ATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG- 447 +R L + + + D V P TI G S + G Sbjct: 384 ELRAEIDERTRAEQRLRLYEKVFENALEGISITDKSGVMVAVNPAFTTITGFTSEEVIGK 443 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 R +H + F + + + R G E R + + + I+ I + + +G Sbjct: 444 NPRVLKSDMH---GEEFYGEMWTTLKAR-GSWHGEIWNRRKNGESYPEILSISSIRDDDG 499 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 +I Y+ + +DI++ K E + + + D LTG+PNR LDRL+ L + + Sbjct: 500 EIANYVAVFHDISDMKHKEEQLAHHLYHDGLTGLPNRVLVLDRLSMALSHANRT-GTKVA 558 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ +D+D +KKIND G A GD +L ++ R+ L + D +AR G+ F ++++ + Sbjct: 559 VLFLDLDNFKKINDSFGHAQGDTLLKAVAERLVALYRDEDTVARQGGDEFLVVVVDVHEE 618 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ D A +++ P + +E+ +T SIG + + ++KNA++AMY +K + Sbjct: 619 REVVDLAEGLQRVFEEPFVIKGQEVFITPSIGVTLYPDDGQDPASLVKNADMAMYQSKAK 678 Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N F + R+ ++ D+ A++ E + + P + L E+ GLEAL++W Sbjct: 679 GRNSYFLFTQQMSERIAQRLTLESDMRRALKEREFTVYFQPKVDLASGEVSGLEALVRWV 738 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 P +S +F+ +AEE +I + F+L+ + + + + + +N++ Sbjct: 739 KPDGIIVSPEDFIPMAEETGLIVPLGEFVLDASCKAMQVLQ-GVGCSALTVAVNLSPIQF 797 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 +L E + A + + SR++L +ES +M + + S L RL ++GI++++DDFGT Sbjct: 798 GQEDLVEMVVANLERNGLPASRLELEITESTLMTDVQSSVAQLNRLVELGITISIDDFGT 857 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L YL P T+K + S + + I+ +++ MA+ + ++A+ + + Sbjct: 858 GYSSLYYLKNFPISTLKIDRSFIRDITIDDSDAKIVETVVLMARTMGIGVVAEGVETKEQ 917 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L GC +Q + + PL I++ L Sbjct: 918 LDLLATFGCATVQGYYYSRPLPLEKIIEFL 947 >gi|94265516|ref|ZP_01289264.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1] gi|93453957|gb|EAT04303.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1] Length = 1052 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 148/567 (26%), Positives = 268/567 (47%), Gaps = 13/567 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 ER L+ + + + V D + + G + G L Sbjct: 490 ERQKREERMRLSSRFLEDTNEAVVITDADARIIEVNRAFEKLTGYSRQEAIGQNPRILQS 549 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D D +R + D+ + G + E R +N+ H + I + + G I Y+GI Sbjct: 550 GHY-DADFYREMWDTLLT--TGHWEGELWSRRKNNELHPKWLSISAVYDQRGRITHYVGI 606 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +ND+T K++ E + D LT +PN F DRL + + +++ + +++ D+D+ Sbjct: 607 SNDLTATKQTQEKLEELTHYDQLTSLPNILLFRDRLQQAMARARREEH-KVALLIFDLDR 665 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K++ND LG +VGD VL + +R+ + L D + R G+ F ++L + A Sbjct: 666 FKEVNDSLGHSVGDLVLTEVAQRLRQQLSLADTICRPGGDEFYLLLGRLTDIDTAVQAAQ 725 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + + P + ++ +T SIG + ++++ E AMYHAK GGN + F Sbjct: 726 NVLELFSKPFQAADHQLYLTPSIGITLFPDDGEEVESLIQSVETAMYHAKKDGGNSFQFF 785 Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK-WGNI 752 + + R+ +K L AVE E L Y P I +VG EALI+W P+ G + Sbjct: 786 QETMFTAALGRMTMKNRLRRAVELEEFELYYQPKIAADGRTVVGAEALIRWVQPERGGPV 845 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S +EF+ +AEE +I I ++L + R + W+ PP+ I +N+++ L + Sbjct: 846 SPAEFIPLAEETGLIIPIGEWVLRQACRQSLLWQQAGL-PPLRIAVNLSAVQFKQPGLDD 904 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ + ++L +ES++M + + L +L+ +GI L LDDFGT S LSY Sbjct: 905 EINWILQEIGLPAELLELEITESLLMEDVTTANATLWKLKDMGIHLALDDFGTGYSSLSY 964 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P DT+K + + ++ A++ +II +A +++ ++A+ + + L + Sbjct: 965 LKNFPLDTLKIDREFVRDLSTDDEDRAVIITIITLAHSLKMEVVAEGVEDADQVAFLRQR 1024 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957 GCD Q H + PL + L+ + Sbjct: 1025 GCDVFQGYHFSRPLPAKEFEQFLRSQN 1051 Score = 96.9 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 14/205 (6%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + I + L+ LI + ++ + + Q + + A + W+W Sbjct: 41 PANRITLLWLLAAALVTNLIFWLILHQIQSHRRVQQELMVSSSQLRKAQQIAKMGHWEWK 100 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + ++ I G S + +L I +DR + + + Sbjct: 101 HDDQPLHWSAELYRIFGQDPESYTPDYQAFLATIPEDDRRQVQEAV-AHTQREGVPYDIT 159 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 R+R + + + R + + G ++ +G A D+T QK++ E + Sbjct: 160 HRIRLPNGREKIIHERGELIRDEQGRPVKMMGTAQDVTAQKQAEEE------------LQ 207 Query: 543 NRQSFLDRLTTILDLSATDDNLRPT 567 NR L L + ++ T D Sbjct: 208 NRLRLLA-LNAEMGMALTQDRSLEA 231 Score = 59.2 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 48/155 (30%), Gaps = 8/155 (5%) Query: 386 VIQHVLATGYFSQGIFSDGERQ---SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + + + R + V D + D +T + G + Sbjct: 353 SLASLADLIALGLERKQNENRLLTQARIVDQIRDAIITTDPAGLIMTWNQGAQRLFGYTA 412 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++L + ++ D ++ + + R Q E V+ + + Sbjct: 413 QEASHRPLSFL--LAPHELDFYQGQVLPQLRERL-SYQIEIEVQTKHGDRRFADFSLTQF 469 Query: 503 SNSNGDILR--YIGIANDITEQKKSLEGILCNAFQ 535 S G R I A DITE++K E + ++ Sbjct: 470 SPEGGGSTRGGIICYARDITERQKREERMRLSSRF 504 >gi|126666371|ref|ZP_01737350.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter sp. ELB17] gi|126629172|gb|EAZ99790.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter sp. ELB17] Length = 723 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 152/599 (25%), Positives = 278/599 (46%), Gaps = 22/599 (3%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 + + A Q + V S DIV+ D I Sbjct: 123 MFATLDAALGKQLLFRAHTDVQQRLEKSEALHRYIVNNSPDIVFMLDDKGRFCFINSKIE 182 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF--H 493 ++LG S ++G ++ + D L +E +++ +Q Sbjct: 183 SLLGYNSEELNGK--HFRHLLDEQDIARGTHTLQDPSVTPENPRTFEVKLKTRGSQKANR 240 Query: 494 WMIIRIRPMSNSN------------GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 + I P+ + G R+ G A D+TE+K++ I A+ D LT + Sbjct: 241 YFEITAFPIDHETLPLGADFNACTTGPKARFYGTARDVTERKEAEAFINFQAYHDLLTRL 300 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR F DRL+ + ++ + VM +D+D++K +ND LG A+GD +L +T+R+ Sbjct: 301 PNRALFTDRLSLAITQASRSKQ-KLAVMFLDLDRFKVVNDTLGHAMGDVLLQVVTQRLEH 359 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L+ D L+R G+ F ++L + NNS A + ++ P L E E+ V SIG + Sbjct: 360 CLRKGDTLSRFGGDEFTLLLPAINNSNDARRIAKKLIDALKAPFQLGEHEVFVGVSIGIS 419 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSE 719 + + I+ ++++NA++AMYH K RG + + ++ ++R+ ++ DL A+EN+E Sbjct: 420 LYPEAGISMDQLIQNADIAMYHVKARGKDGYRFYSESMNIDTANRLSLERDLRQALENNE 479 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L + Y P + IVGLEAL++W HP G + +F+ +AEE +I A++ +L + Sbjct: 480 LRVYYQPQVCAKSGRIVGLEALVRWQHPDRGLLYPKDFLPLAEETKLIVALSEQVLAQAC 539 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 R + W + + +N++ + E + + + S +++ +E+V+M Sbjct: 540 RQVKGWI-LDGNRDLRLAVNMSPIQVEHPRFVEILIRQLKNEEFPASHLEIEITENVIMN 598 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897 + E+ L +L G+ + +DDFGT S L+YL +P T+K + S + G E Sbjct: 599 DLEQISQKLRQLADYGVRIAIDDFGTGYSSLNYLHQLPIHTLKVDQSFVRGIGNGEDGAC 658 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I+ +I+ MA ++ IIA+ + + + L +GC IQ +I ++L + Sbjct: 659 IVNAIVAMAHGLKLDIIAEGVETDAQLAYLRGLGCQQIQGFLYGPAQPPEAISRMLDGQ 717 >gi|71906994|ref|YP_284581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846615|gb|AAZ46111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 862 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 152/563 (26%), Positives = 262/563 (46%), Gaps = 19/563 (3%) Query: 402 SDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHI 458 E+ +A S + D R G ++ G R H Sbjct: 267 QSEEQLRIAAAAFESQTCMIITDANRVIQRVNRAFIETTGYSAEEAVGQTPRLLQSGRHG 326 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D +R + ++ +R G Q E R + + + + I + +NG + YIG ND Sbjct: 327 AD--FYREMWETI--HRTGAWQGEIWGRRKNGEVYPKWLSISAVVGTNGRVSHYIGTHND 382 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE+KK+ E I AF D LTG+PNR LDRL + S D+ ++ ID+D +K Sbjct: 383 ITERKKAEERINALAFFDQLTGLPNRTLLLDRLKQTILSSGRSDS-HGALLFIDLDNFKT 441 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADF 633 +ND LG VGD +L + R+ ++ D +ARL G+ F ++L + N + Sbjct: 442 LNDTLGHDVGDQLLKQVALRLTHCVRDGDTVARLGGDEFVVVLANLNTNDKEAAQDTETV 501 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + ++ L +ASIG + I +++K A+L+MY AK G N V Sbjct: 502 AEKILATLNQTYQLGHVTHHSSASIGATLFKGPLIPIDDLMKQADLSMYKAKAAGRNAVR 561 Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F S + +V +++DL A+ + L Y +++ E + G E L++W HP+ G Sbjct: 562 FFDPSMEIAVKVRAEMEDDLLRALAEKQFLLHY--QAQMVGERLTGAEVLLRWQHPQRGM 619 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S +EF+ +AEE +I + ++LE + W + + + + +N+++ N+ Sbjct: 620 VSPAEFIPLAEETGLILPLGHWVLETACTQLAQWAGRPEVAHLTLAVNVSAHQFRQNDFV 679 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + ++ KT +P R+KL +ES+++ N E + L+ G+ +LDDFGT S LS Sbjct: 680 DQVLGVLEKTGANPQRLKLELTESLLVENVEDIIDKMAALKHRGVGFSLDDFGTGYSSLS 739 Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P D +K + S + + +I R+I+ +A ++ +IA+ + E L Sbjct: 740 YLKRLPLDHLKIDQSFVRDVLTDSNDASIARTIVALANSLGLGVIAEGVETEAQRDFLAS 799 Query: 930 MGCDYIQDSHVASPLGFNSILKL 952 GC Q + + PL Sbjct: 800 SGCHTYQGYYFSRPLPIEDFESF 822 Score = 63.0 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 3/146 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 ++ Q + + R + D + D + +LG + + G Sbjct: 4 RYRRLVIRLEQALRTSEARLHSFFDATPDALLISDAHGTITMANQQVEKLLGYVAAELVG 63 Query: 448 -PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 I + +P R+ + RR + R D + + + + Sbjct: 64 KSIEDLVPNRFKASHPVLRSEFTASPRARRMGNGMAVKARRKDGSECDVDVSLSRIETDE 123 Query: 507 GDILRYIGIANDITEQKKSLEGILCN 532 G + + DI+E+K+ E + Sbjct: 124 G--MFFASALRDISERKRKEEELRRQ 147 Score = 39.5 bits (91), Expect = 3.1, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 48/161 (29%), Gaps = 19/161 (11%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + ++ + + + S + +D V +L L Sbjct: 126 FFASALRDISERKRKEEELRRQNGVLSTIFQSFPGGITLFDADLRLVAFNDQFKALLDLP 185 Query: 442 SGSMHGPIRNWLPYIH---------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 P ++ I D + + + + + ++ D Sbjct: 186 DVLFEQPEPDFETLIRYNAARGEYGPGDPEQQVAAI---IARTKKFVPHKIERVRPDGT- 241 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + IR + ++G ++ I DIT++K+S E + A Sbjct: 242 ---SLSIRGVPLASG---GFLSIYTDITDRKQSEEQLRIAA 276 >gi|304412197|ref|ZP_07393806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|307306941|ref|ZP_07586681.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] gi|304349463|gb|EFM13872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|306910519|gb|EFN40949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] Length = 1508 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 145/555 (26%), Positives = 274/555 (49%), Gaps = 18/555 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465 + + V + + P I G + +IH R+ F Sbjct: 958 VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 TI + ++ E +R Q + + I + + G+ ++ + DIT++KK+ Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L ++ RR+ ++ D +ARL G+ F IIL + + + ++ P Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L ++ +T++ SIG + + + + ++K A+ AMYHAK G N+ + + + + Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 V ++ L A++ +EL LVY P L D + G+EAL++W H + G IS EF+ +AEE Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKDGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++ + + + W I + +N++++ L ++ ++ ++ + Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + AI +II +A +++ ++A+ + + + L GCD +Q ++ Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487 Query: 942 SPLGFNSILKLLKER 956 PL L LLK + Sbjct: 1488 KPLSAADFLTLLKNQ 1502 Score = 103 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 F I + ER LA+ SGD +WDW+I ++V T ++I S ++ Sbjct: 822 REFETSIRASEERLKLALWASGDGMWDWNIPENQVYRTNMDSSIPHWNSSNIVH------ 875 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRY 512 +H DR+ F+ L+ + R + E+RV + + W++ R + + +S + +R Sbjct: 876 ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDNPIRM 935 Query: 513 IGIANDITEQK 523 G +IT +K Sbjct: 936 TGTNRNITSRK 946 >gi|53804441|ref|YP_113700.1| sensory box protein [Methylococcus capsulatus str. Bath] gi|53758202|gb|AAU92493.1| sensory box protein [Methylococcus capsulatus str. Bath] Length = 712 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 156/642 (24%), Positives = 286/642 (44%), Gaps = 12/642 (1%) Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 V Y + G +V++ A + + + +V Sbjct: 73 VTLIILLGKYLWIAGILASVVMSEAVTAAMGLLFKGEVTYDYLATGMVAALFVSAIMVTA 132 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATI 437 ++ + + ++ + + R + + D + D + T+ Sbjct: 133 IMKMEELE-RRRQEEVAKNRALRASERRYRTLIEVASDAILVTDSETGTLVDCNRQAETL 191 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 LG++ + G L + +L + + G + E + AD + + Sbjct: 192 LGMSRNEIIGRHLCNLQQTGNDADGAETDLLGHMLRGKTGTI--ELSLVRADGTTVPVEV 249 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 +G G DIT+++++ + I A D LT +PNR RL ++L Sbjct: 250 SSST-FEMDGR-RYVHGAFRDITQRREAEDRIKHLAHHDPLTNLPNRVFLHGRLEQAIEL 307 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + N + VM ID+D +K+IND LG +GD +L + R+ E + ++ RL G+ F Sbjct: 308 ARREQN-QVAVMFIDLDNFKRINDTLGHRIGDALLEQVAARLTENVPGSQVVGRLGGDEF 366 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 +++ S A A + +S+ P + + ++ ASIG A + + ++ ++K+A Sbjct: 367 IVVITGNRVSTTSAAMAERILESLCRPYTVEDYQLHSGASIGIAIYPADGNSAETLMKHA 426 Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMYHAK RG N E F + R +R+ I+ L A+++ L Y P I L I Sbjct: 427 DAAMYHAKSRGRNTFEFFSQAINRGVRERLDIENGLRDALKHGGFKLHYQPQIDLTTGSI 486 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +EAL++W HP G I+ F+ IAEE +I + L++++R + +WR+ + + Sbjct: 487 CSVEALLRWRHPLLGVIAPDRFIPIAEETKLILPLGLWVIDRACHQLRAWRND-GIAGVR 545 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ K L D E + +++ + S S I+L +ES +M N R + LL L+ G Sbjct: 546 MAVNVSVKQLQDESFFEALGSIVERHGLSGSDIELEITESAIMENLSRVQALLKSLQDYG 605 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 I+L++DDFGT S L L +P ++K + S + I II + ++ I Sbjct: 606 ITLSIDDFGTGYSSLGRLKLLPIQSLKIDRSFVHDIETDHGNAKICDGIIALGHSLGLKI 665 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 IA+ + + L GCD IQ +A PL + + KL+ + Sbjct: 666 IAEGVETDAQKNLLQNSGCDAIQGFLIAKPLPADDVAKLITQ 707 >gi|126176238|ref|YP_001052387.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS155] gi|125999443|gb|ABN63518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS155] Length = 1508 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 145/555 (26%), Positives = 274/555 (49%), Gaps = 18/555 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465 + + V + + P I G + +IH R+ F Sbjct: 958 VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 TI + ++ E +R Q + + I + + G+ ++ + DIT++KK+ Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L ++ RR+ ++ D +ARL G+ F IIL + + + ++ P Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L ++ +T++ SIG + + + + ++K A+ AMYHAK G N+ + + + + Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 V ++ L A++ +EL LVY P L D + G+EAL++W H + G IS EF+ +AEE Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKDGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++ + + + W I + +N++++ L ++ ++ ++ + Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + AI +II +A +++ ++A+ + + + L GCD +Q ++ Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487 Query: 942 SPLGFNSILKLLKER 956 PL L LLK + Sbjct: 1488 KPLSAADFLTLLKNQ 1502 Score = 103 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 F I + ER LA+ SGD +WDW+I ++V T ++I S ++ Sbjct: 822 REFETSIRASEERLKLALWASGDGMWDWNIPENQVYRTNMDSSIPHWNSSNIVH------ 875 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRY 512 +H DR+ F+ L+ + R + E+RV + + W++ R + + +S + +R Sbjct: 876 ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDNPIRM 935 Query: 513 IGIANDITEQK 523 G +IT +K Sbjct: 936 TGTNRNITSRK 946 >gi|331018900|gb|EGH98956.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1250 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 148/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V G + + L + Sbjct: 682 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRASGYEVAQVLDQLPGMLT-V 740 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 741 ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 798 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 799 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 857 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 858 KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 917 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 918 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 977 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 978 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1096 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1097 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ Sbjct: 1217 EHGCDEVQGYLFGRPMPPKQFEA 1239 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 592 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 593 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 650 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G+ G+ DI++Q+++ + + A Sbjct: 651 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 694 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 + + + + LG + + +H +D +++ + L LQ Sbjct: 440 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 499 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532 R R +N + +R + + ++ + R IGIA DITEQ + S + Sbjct: 500 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 559 Query: 533 A 533 A Sbjct: 560 A 560 >gi|291614972|ref|YP_003525129.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291585084|gb|ADE12742.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 1347 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 144/570 (25%), Positives = 264/570 (46%), Gaps = 10/570 (1%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + + + S + + D+ + A I G + G Sbjct: 777 FRDITERKQTEDALRQGAAVFESSHNGIIITDLDGHILAANQAYADISGYTESELLGQNP 836 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 L RD +R + + G Q E R + + + + + + N G Sbjct: 837 RILNS-GRQSRDFYRKMWANIKE--AGSWQGELWNRRKNGEIYPTWLAVSAVRNDQGKAT 893 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 Y+GI++D+++ +++ A D LT +PNR LT L + N + V+ Sbjct: 894 HYVGISSDLSQLRQTEAEREHLAHYDPLTDLPNRLLLRSHLTHALAQAKRHHN-QVGVLY 952 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D++K IND LG VGD++LV+LT R+ ++ D+LARL G+ F ++L N Sbjct: 953 LDLDRFKNINDSLGYQVGDELLVTLTERLTMHMRSEDLLARLGGDEFLLVLEHINEPEDS 1012 Query: 631 ADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A A ++ +++A P L REI + ASIG + + + ++ +++++A+ AM+ AK G Sbjct: 1013 AIVARSLLETLAQPFVLHGEREIFIGASIGISIFPNDGDSAEQLIQHADAAMHQAKTLGR 1072 Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ + ++ L A+ ++L + Y P + + I+G EAL++W P Sbjct: 1073 NTYHFYTEDLSRASNEHLELENRLRHAITANQLRVYYQPQVDIATGHIIGAEALVRWQDP 1132 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G + +F+ +AEE +I AI ++L+ + W D P + + +N++ L Sbjct: 1133 ERGLVQPGQFIPLAEETGLIGAIGEWVLKETCLQGMRWIDAGL-PFLTLAVNLSPHQFLR 1191 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + + ++++T + R++L +ES +M E +L LR I L +DDFGT Sbjct: 1192 GNIAGLISKVLAETGFPADRLELELTESALMQQGEDVIKMLHLLRAQDIRLAIDDFGTGY 1251 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL P D +K + S + + + I +II M + ++A+ + ++ Sbjct: 1252 SSLSYLKRFPLDILKIDKSFVDDIPFHQDDMEIAATIIAMGHILGFKVLAEGVETREQLE 1311 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GCD Q + P+ KLLKE Sbjct: 1312 FLQARGCDLYQGYLTSPPIPAEEFEKLLKE 1341 Score = 89.2 bits (220), Expect = 3e-15, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 61/199 (30%), Gaps = 12/199 (6%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 MA+ + + A++ V+ ++ Q L + ++ L Sbjct: 367 MALPNEMIFWLGLVAILIVFVVTSAVMLIWRQQQRLHRMELANRSSEQDKQLKLFYDLPF 426 Query: 416 DIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 + R V + +LG + + W+ H +D + V Sbjct: 427 IGMAITSPATKRWVYANDRLCDMLGYSRDDLLKT--AWIDLTHPDDVAGNLKEFERMVAG 484 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-CNA 533 E R D + + ++ ++G + + +DIT++K++ + A Sbjct: 485 ETDGFNIEKRFIRKDGSPITVNLDVKCTRRADGKPDLIVALVDDITQRKQTELALRAKEA 544 Query: 534 FQDNLTGIPNRQSFLDRLT 552 R F + L Sbjct: 545 TY--------RSLFDNMLN 555 Score = 70.0 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 8/152 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLAS 442 V + + + +R + D + D + IA +LG ++ Sbjct: 649 VVVSEDITERKQAETALRDSEDRFRSIFNNAIDGILLADSGTRKFIMGNSAIARMLGYSN 708 Query: 443 GSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + ++ IH D++ + V L V+ D + I+ P Sbjct: 709 EEL---LQLGTEDIHPEQDKEYYIAQFAMMVRGES-TLSSNAVVKRKDGSVFYADIKASP 764 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + GD + +G DITE+K++ + + A Sbjct: 765 LRI--GDKVYLMGFFRDITERKQTEDALRQGA 794 >gi|39997142|ref|NP_953093.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|39984032|gb|AAR35420.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|298506155|gb|ADI84878.1| sensor diguanylate cyclase/phosphodiesterase, GAF and PAS_4 domain-containing [Geobacter sulfurreducens KN400] Length = 762 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 151/603 (25%), Positives = 272/603 (45%), Gaps = 25/603 (4%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWD-- 420 + Q A +VL + + + H + ++ + + D V + Sbjct: 150 LQQYAHTASMVLRTVRLMVDLRHHAAMLEEENDERTRAEQKLAETNVFLNSVVDGVAEPM 209 Query: 421 --WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT------ILDSFV 472 + R + T ++ G IH D R +LD Sbjct: 210 VVVGLDRRVIMTNRAARDFFQISD---VGSDEACHRLIHHRDTPCVREEGMQCPLLDVRT 266 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R E R R+ D + ++ P+ S+G + I DIT+++++ E I Sbjct: 267 AKRPVIATQEHRDRSGDKRVVEVMTS--PLLGSDGVAIGIIEAFRDITDRRQAEETIRQM 324 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A+ D+LTG+PNR+ F DRL L L+ + L +V+ +D+D++K IND LG AVGD +L Sbjct: 325 AYYDSLTGLPNRRLFNDRLRQSLALAQRNKRL-LSVLFLDLDRFKLINDTLGHAVGDKLL 383 Query: 593 VSLTRRIGE-LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 + + +R+ + D +AR G+ F I L ++ A + S+ P + E Sbjct: 384 MQVAKRLKGVCRRDGDTVARQGGDEFIINLSVISDVKDALKVAQKIIDSLRTPFVIDGHE 443 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKE 709 + +T SIG + + TS ++KNA+ AMY AK +G N+ + + +R+ ++ Sbjct: 444 LFITTSIGISVFPYDGRTSDALVKNADFAMYRAKEQGRNNCQLYTPEMNSKAFERLSLEN 503 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 +L +E EL L Y P + + D +I +EAL++W HP G + + F+ +AEE +I Sbjct: 504 NLRKGLEREELVLYYQPKVNVEDGQISCMEALVRWQHPTMGLVPPARFIPLAEETGLIVP 563 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 + ++L R W+ PP+ + +NI+ + L L + ++ +S + +P + Sbjct: 564 LGEWVLRTACRQNREWQKA-GYPPMQVAVNISPRQLQQGNLVDVVERALSDSGLAPRWLV 622 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES++M E + L ++GI + +DDFGT S L YL P +K + S + Sbjct: 623 LEVTESIMMDGTESTLATFRVLERMGIHIAIDDFGTGYSSLHYLKKFPIHALKIDRSFIR 682 Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 AI ++I MAK + ++A+ + ++ L + C ++Q + P Sbjct: 683 DITTNPDDEAITSAVITMAKGLNLKVVAEGVETVEQLEVLRALQCTHMQGHLFSRPAPAE 742 Query: 948 SIL 950 Sbjct: 743 QFA 745 >gi|302187996|ref|ZP_07264669.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 1251 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 262/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 683 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 741 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 742 ESEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 799 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 800 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 858 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 859 KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIH 918 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 919 VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 978 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 979 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 1038 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1039 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1097 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1098 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1157 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1158 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1217 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ Sbjct: 1218 EHDCDEVQGYLFGRPMPPAQFEA 1240 Score = 75.8 bits (185), Expect = 4e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 534 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 593 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEFRVR-------AADN 490 + W I + F ++D RL+ E +R AD Sbjct: 594 WILQN--GWSAAIANPQQIVGFDALMDRIDKVLDKPQELARLREEVTIRMFLFDCLRADG 651 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + +R+ + +G+ G+ DI++Q+++ + + A Sbjct: 652 SKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 695 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 401 ILSIGDITSRKQVELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 460 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 +H + +H +D N++ + L LQ R R ++ + IR + Sbjct: 461 SELHAMGEFFWEVLLHPDDARNYQDMRLRQRHHGHNELLQRVLRFRDRESNWRSFDIREQ 520 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DITEQ + S + A Sbjct: 521 ALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 561 Score = 40.7 bits (94), Expect = 1.3, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 32/187 (17%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425 A + G LI +L+ + +++ + + R G+G + D+ Sbjct: 227 LAPLIGKCLIGLLLSILPLIALMSLRRRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 286 Query: 426 --DRVTTT--PDIATILGLASGSM----------------------HGPIRNWLPYIHIN 459 + + + D +L S+ + W P I Sbjct: 287 QLEALEVSTEEDFERLLKSQPASLRRLLQQLHISELNEVALSLLNIEHSEQAWQPLIEGE 346 Query: 460 DRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 R + V + RL+ E + AD Q + + +R + + D I Sbjct: 347 SRSRPGVGIPIIQAVLTGQPRLELEICLTRADGQDQHLWLVMR-LPETRSDFDAVILSIG 405 Query: 518 DITEQKK 524 DIT +K+ Sbjct: 406 DITSRKQ 412 >gi|119472850|ref|ZP_01614757.1| putative orphan protein; putative conserved domain [Alteromonadales bacterium TW-7] gi|119444682|gb|EAW25989.1| putative orphan protein; putative conserved domain [Alteromonadales bacterium TW-7] Length = 985 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 154/644 (23%), Positives = 290/644 (45%), Gaps = 11/644 (1%) Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372 + + + Y + + + VL ++ + G T+ + + + + Sbjct: 336 LKFFGLFILYAILVALLLHQALQHLVLRRLHSLVYAVSSFGQGKLDTQFPEENKDEIGTL 395 Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 G + + +I + + R S AV SG V D P Sbjct: 396 NGSFKDMTVEIRKLIDGLNQRITEKEIAEKAANRLSKAVAFSGTGVVITDENFVIEYVNP 455 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 + + G R L I +D +D + R + + + + D Q Sbjct: 456 KMLEMTGYPESHFT---RAPLLNIIASDMAILVEDIDIDLRSRN-YWRGDTLIESKDKQP 511 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 W+ + + P+ G+I Y+ A DI+ K+S + A+ D LTG+ NR F +L Sbjct: 512 IWVSLSVSPIREEGGNITSYVASAQDISFVKESQRKMEQLAYFDTLTGLANRTFFRMQLR 571 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 L L+ + ++ D+D++K+IND LG GD +L+ + R+ + L+ D +ARL Sbjct: 572 KSLALAER-GHYAFSLFYFDLDEFKRINDTLGHDAGDQLLIQVANRLKKRLRSEDTIARL 630 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F ++L + D A +++++ MPI L E+ ++ASIG + + Sbjct: 631 GGDEFAVLLSGIESQEHATDVANTIQQTLNMPIMLGNNEVIISASIGITMAPYDSLEEDQ 690 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRL 730 +LK+A+LAMY AK +G N + + + + +L +A++ + + Y P I Sbjct: 691 LLKHADLAMYEAKEKGRNTFHFYSQELNAAANERLFIENELRIALKEDQFVVYYQPQIDS 750 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 +++VG EAL++W HP G I +F+ IAE +I + ++L+ ++ +Q Sbjct: 751 RTQKVVGYEALLRWFHPTEGLIPPDKFIPIAEATGLIVELGEWVLQESCDFVVRLTEQNR 810 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + IN++++ D+ L + +I + S R+ L +ES++MGN E + L Sbjct: 811 ENN--VSINLSARQFKDSNLVPTLSKMIITSGVSAKRLHLELTESMLMGNVEAAIAQLHE 868 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 L+ +GIS+++DDFGT S LSYL P D +K + S + + I +II MA+ Sbjct: 869 LKALGISISIDDFGTGYSSLSYLKRFPVDILKIDRSFVQDIPEDSNDMEITAAIIAMAQK 928 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + ++A+ + ++ L C +Q + + P+ + + L Sbjct: 929 LNLDVVAEGVETIEQVEFLQNNNCFIVQGYYYSRPIPESDLPDL 972 >gi|94264524|ref|ZP_01288311.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1] gi|93455083|gb|EAT05310.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1] Length = 694 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 147/567 (25%), Positives = 268/567 (47%), Gaps = 13/567 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 ER L+ + + + V D + + G + G L Sbjct: 132 ERQKREERMRLSSRFLEDTNEAVVITDADARIIEVNRAFEKLTGYSRQEAIGQNPRILQS 191 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D D +R + D+ + G + E R +N+ H + I + + G I Y+GI Sbjct: 192 GHY-DADFYREMWDTLLT--TGHWEGELWSRRKNNELHPKWLSISAVYDQRGRITHYVGI 248 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +ND+T K++ E + D LT +PN F DRL + + +++ + +++ D+D+ Sbjct: 249 SNDLTATKQTQEKLEELTHYDQLTSLPNILLFRDRLQQAMARARREEH-KVALLIFDLDR 307 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K++ND LG +VGD VL + +R+ + L D + R G+ F ++L + + Sbjct: 308 FKEVNDSLGHSVGDLVLTEVAQRLRQQLSLADTICRPGGDEFYLLLGRLTDIDTAVQASQ 367 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + + P + ++ +T SIG + ++++ E AMYHAK GGN + F Sbjct: 368 NVLELFSKPFQAADHQLYLTPSIGITLFPDDGEEVESLIQSVETAMYHAKKDGGNSFQFF 427 Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK-WGNI 752 + + R+ +K L AVE E L Y P I +VG EALI+W P+ G + Sbjct: 428 QETMFTAALGRMTMKNRLRRAVELEEFELYYQPKIAADGRTVVGAEALIRWVQPERGGPV 487 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S +EF+ +AEE +I I ++L + R + W+ PP+ I +N+++ L + Sbjct: 488 SPAEFIPLAEETGLIIPIGEWVLRQACRQSLLWQQAGL-PPLRIAVNLSAVQFKQPGLDD 546 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ + ++L +ES++M + + L +L+ +GI L LDDFGT S LSY Sbjct: 547 EINWILQEIGLPAELLELEITESLLMEDVTTANATLWKLKDMGIHLALDDFGTGYSSLSY 606 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P DT+K + + ++ A++ +II +A +++ ++A+ + + L + Sbjct: 607 LKNFPLDTLKIDREFVRDLSTDDEDRAVIITIITLAHSLKMEVVAEGVEDADQVAFLRQR 666 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957 GCD Q H + PL + L+ + Sbjct: 667 GCDVFQGYHFSRPLPAKEFEQFLRSQN 693 Score = 58.4 bits (140), Expect = 6e-06, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 8/149 (5%) Query: 392 ATGYFSQGIFSDGERQ---SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + R + V D + D +T + G + Sbjct: 1 DLIALGLERKQNENRLLTQARIVDQIRDAIITTDPAGLIMTWNQGAQRLFGYTAQEASHR 60 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 ++L + ++ D ++ + + R Q E V+ + + S G Sbjct: 61 PLSFL--LAPHELDFYQGQVLPQLRERL-SYQIEIEVQTKHGDRRFADFSLTQFSPEGGG 117 Query: 509 ILR--YIGIANDITEQKKSLEGILCNAFQ 535 R I A DITE++K E + ++ Sbjct: 118 STRGGIICYARDITERQKREERMRLSSRF 146 >gi|74318446|ref|YP_316186.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74057941|gb|AAZ98381.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Thiobacillus denitrificans ATCC 25259] Length = 954 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 138/575 (24%), Positives = 260/575 (45%), Gaps = 14/575 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 S+ + + A + WDW I +R+ + I + GL G Sbjct: 367 RQIALASRQLGETKDSLDRAQRIAQMGNWDWYIAENRLFWSEGIYRLFGLRQGQFEASYE 426 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 +L ++ +DR + + + R+ D + + ++ G Sbjct: 427 AFLVRVYPSDRAAVDAAVQRAL-NTGAPYALDHRIVRPDGSVRVVHETGEVLLDALGKPS 485 Query: 511 RYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 R IG D+T +++ + + A+ D LT +PNR LDRL + + Sbjct: 486 RMIGTVQDVTHWREAEQALREKDAHLEHVAYHDPLTDLPNRALLLDRLRAAVSRNGRTGG 545 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R V+ ID+D++K IND LG AVGD VL + R+ L + D LARL G+ F ++L Sbjct: 546 -RLAVVFIDLDRFKTINDSLGHAVGDAVLQAAASRLRSLTRDGDTLARLGGDEFVLLLDG 604 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ A + ++ +++ + ++ASIG + + + +L++A+ AMY Sbjct: 605 LRDNAAAGAVAEKIITALERMLHVGSYPLHISASIGISLYPEDGRDAEALLRHADAAMYK 664 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 +K RG N + + R+ ++ L A ++ L + Y P++RL I G EAL Sbjct: 665 SKERGRNTFHFYEHGITERAMRRLQLESRLRRAFDDRTLQVHYQPLVRLDTGHICGAEAL 724 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINI 800 ++W+ P+ G I F+ +AE+ +I I +++ + W + +P + +N+ Sbjct: 725 LRWNDPEAGAIPPDHFIALAEDTGLIVPIGEWVVGEACEALKRWETEILLPADFALHVNL 784 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + K LL +L + ++ SP+R+ L +ES +M + ++ LR+ G+ + + Sbjct: 785 SGKQLLQKDLPTRLSDAFTRAGVSPARVVLELTESSIMESEATGVAVMTALREFGVEIAI 844 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LS L +P +K + S + AI+++I+ ++ + +IA+ + Sbjct: 845 DDFGTGHSSLSRLKLLPISELKIDRSFIRDIAVDSDDAAIVQAILALSAKLGLGVIAEGV 904 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L + GC Q A P+ + +++LL Sbjct: 905 EHAEQEAFLMQHGCLRAQGYRYARPMPEDELIRLL 939 >gi|253998253|ref|YP_003050316.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253984932|gb|ACT49789.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylovorus sp. SIP3-4] Length = 984 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 139/614 (22%), Positives = 269/614 (43%), Gaps = 13/614 (2%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + I +I+ V L I + + + Sbjct: 373 FVIIPIFVHAHWWGVIMIERDHAASTVTSQELGALMSIGRSFGVAIQRESSDHRLHQAKI 432 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTI 467 A + + ++ D + I G + G I N L Sbjct: 433 AFESTAEGIFITDDELRTIAINQGFTDITGYTEDDVLGNIPNVLEADLKKPEPHREIWKA 492 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L R GR + EF + +N+ + + + ++N G ++ Y+G+ DI+E K S Sbjct: 493 L-----TREGRWRGEFWNQRKNNEQYAEWVTLTAVNNEEGKVINYVGVFADISEIKHSQS 547 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + +D LTG+PNR+ + L + + + N ++ +D+D++K IND LG + Sbjct: 548 RLNELVNRDPLTGLPNRRLMHELLDHAIKYAEREQN-EIALLFVDLDRFKAINDTLGHQM 606 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L +++RI ++ D +ARL G+ F +++ A A + S+ + Sbjct: 607 GDKLLFEVSQRIRAAVRDSDAVARLGGDEFIVMMDVLREREDAAKVAKKIISSLQNEFLI 666 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRV 705 RE+ ++AS+G + + + ++K A++AMY K++G N+ + +R Sbjct: 667 DGRELFISASVGISVYPDDSLDVDGLIKAADIAMYQVKNKGKNNHCFYSADLSQNAVERF 726 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ L A+ + + Y + L I+G E+LI+W HP+ G +S ++F+ +AEE Sbjct: 727 TLENQLRRALARDQFEVYYQAQVSLETGRIIGAESLIRWIHPELGVVSPAKFIPLAEETG 786 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++L + A + W DQ ++ +N++ + + + + ++ +T Sbjct: 787 LIIPIGEWVLRQSAMQVKEWHDQGFDID-WVSVNVSGVQIQRSNFADTVYGILVETDCES 845 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++L +ES VM N E + R++ +G+ L +DDFGT S LS+L +P D +K + Sbjct: 846 HLLELEITESTVMHNTEYVIDVFDRIKHLGVRLAIDDFGTGYSSLSHLKRLPLDKIKIDQ 905 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + AI +I MA+++ T+IA+ + L ++GC Q + P Sbjct: 906 SFVRDLPNNSDDAAIATAINAMAQSLGFTVIAEGVETRQQASFLKKIGCQQGQGYLYSRP 965 Query: 944 LGFNSILKLLKERF 957 + + LL+ Sbjct: 966 VTASEFTALLRAEQ 979 Score = 43.4 bits (101), Expect = 0.20, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 5/156 (3%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445 +Q V + S + S D + D + ++L L + Sbjct: 106 MQDVTERFASEYELRSMLNLLRKLIDASPDYICLKDGAGRWLHANTSGLSLLHLNGVNTQ 165 Query: 446 HGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 R H N RD + D +V L+ E V + + P+ Sbjct: 166 GKTDRELADLTHPNLRDFMQHWQAADEYVWETGQLLREEETVPLPGGD-RVLDVIKVPLF 224 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538 + +G + + DIT++K+ + A D L Sbjct: 225 HDDGSRHGIVTLGRDITDRKQVESQLRQRSAILDAL 260 >gi|115265595|dbj|BAF32857.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. actinidiae] Length = 1278 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 710 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 768 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 769 ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 826 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 827 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 885 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 886 KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 945 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK G N+ Sbjct: 946 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKECGKNNF 1005 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G AL++W HP+ G Sbjct: 1006 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAGALLRWRHPRRG 1065 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1066 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1124 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1125 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1184 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1185 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1244 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ + Sbjct: 1245 EHGCDEVQGFLFGRPMPPSQFEA 1267 Score = 75.8 bits (185), Expect = 4e-11, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 561 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDTHLTVNYVSPSVERALGYSAD 620 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 621 WI--TRNGWSAAIANPQQLTGFDALISRISKVLNKPQELARLRDEVTTRMFLFDCLRADG 678 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G+ G+ DI++Q+++ + + A Sbjct: 679 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 722 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 + + + + LG +H + +H D +++ + L LQ Sbjct: 468 LSQRMIYSNHHFGHTLGYNKFELHAMGEFFWEILLHPEDAKSYQDMRLRQRHHGHNELLQ 527 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532 R R +N + +R + + ++ + R IGIA DITEQ + S + Sbjct: 528 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 587 Query: 533 A 533 A Sbjct: 588 A 588 >gi|82702732|ref|YP_412298.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC 25196] gi|82410797|gb|ABB74906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196] Length = 688 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 142/575 (24%), Positives = 273/575 (47%), Gaps = 9/575 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + S + + + S D + D+ I G + + G Sbjct: 119 WSFRDITERRQGESYKAQLAAILDSSNDALIIKDLNGIISGWNTGAERIFGYRASEIIGS 178 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + I + + I++ ++ R + + + I P+ ++ G Sbjct: 179 PIS--RLIPPDRLEEEDRIMNLVKSGKQTNHLETVRW-GKGKKPIDVSVTISPVKDNAGH 235 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I+ IA+DIT++K+SL+ I A D LTG+PNR F DR+ ++ ++ R + Sbjct: 236 IVGAYKIAHDITQRKESLKRIEYLAHYDLLTGLPNRALFTDRMRIAIENASRYA-FRLAL 294 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D++K IND LG A+GD +L ++ R+ ++ D ++RL G+ F ++L + + Sbjct: 295 LFVDLDRFKLINDSLGHAIGDKLLRAVAERMQSTVRQADTVSRLGGDEFVVLLGRIHTAT 354 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + A A + ++ P + + E+ +TAS+G + + S + +++NA+++MY AK +G Sbjct: 355 EAARVAEKLIAVLSQPYQIEQHELLLTASVGISIYPDSGKDVNSLMRNADVSMYSAKGQG 414 Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N + + +R+ ++ DL A+ E++ VY P + L +VG+EAL++W H Sbjct: 415 RNRYQFYSEDLTSGADERLRLEYDLRSALARDEIFPVYQPQLELATGRVVGVEALMRWKH 474 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G +S + F+ +AE+ +I ++ +L W +Q I +N+++ Sbjct: 475 PERGLVSPASFIPVAEDSGLILSLGEHILRESCLQARQWHEQQGFEG-TIAVNVSAVQFR 533 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 N+ + + ++ + SP ++L +ESVVM E + + L GI L +DDFGT Sbjct: 534 QNDFTDVVLRALADSGLSPECLELELTESVVMHGVESATQKMCFLESRGIKLAIDDFGTG 593 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL D +K + S + AI+R+I+ M +++ +I + + E Sbjct: 594 YSSLSYLRQFAIDRLKIDRSFVRDLPQDTDAKAIIRAIVGMGRSLGLRVIVEGVETEGQA 653 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + L + CD Q A P+ + +K R P+ Sbjct: 654 EYLRSVQCDESQGYLYARPMRPDDFEAWVKTRNPV 688 >gi|294677710|ref|YP_003578325.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB 1003] gi|294476530|gb|ADE85918.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodobacter capsulatus SB 1003] Length = 831 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 149/576 (25%), Positives = 266/576 (46%), Gaps = 12/576 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 T+++ + T + E+ A+ + W W + DRV + GL + Sbjct: 256 TILRDITETMQIFDALRQSEEKLRFALEAARAGWWQWHCLEDRVICSERFLQQHGLDPAA 315 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ-FHWMIIRIRPMS 503 + WL +H DR R ++ + ++RV D + W+ R Sbjct: 316 GPVTLAGWLARLHPEDRSGVRALVLGALESGGRDQALQYRVALPDGRGPRWIEAFGRIER 375 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ G R GI+ D+T++ +++E I A D LTG+PNR FLDRL L Sbjct: 376 DAAGRAQRVNGISFDVTDRFEAVERIAYLAHHDGLTGLPNRALFLDRLEAALGRVRHARG 435 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V++ID+D++K++N+ LG A GD +L ++ R+ + D LARL G+ F ++L Sbjct: 436 --CAVLLIDLDRFKEVNETLGHAAGDRLLCAVAARLRAEVSAADTLARLGGDEFAVLLTE 493 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ A + +I +L R I + AS+G A S ++ ++K A++A+ Sbjct: 494 TEAPQTVSALAERLIAAIEAEFDLDGRRIGIGASLGIAMAPSDGLSPKALVKAADVALCR 553 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + F S + ++ DL A + L + PI+ + + LEAL Sbjct: 554 AKADGSGCLRFFAPESDSRMQQRRALESDLRRAWAARDFQLFFQPIVEMKTRRVSCLEAL 613 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G +S F+ +AEE+ +I I ++L W + + +N++ Sbjct: 614 LRWHHPERGWVSPETFIPLAEEMGLIVPIGEWVLTEACAAAARWP-----GSLRVAVNLS 668 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 L L E + A + +T + +R++L +E+V+M + L RL+ IG+ + +D Sbjct: 669 PVQLAHIGLAEAIAAALRRTGLAANRLELEITETVMMKETPATLATLERLKGIGLRIAMD 728 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFG S L L PFD VK + + G +++ AI+R++ M +++ A+ + Sbjct: 729 DFGAGYSSLRNLQRFPFDKVKIDRAFTAGLGTSQQSAAIVRAVTGMCQSLGMVSTAEGVE 788 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E + L R GC +Q + P+ + LL Sbjct: 789 TETQLAALAREGCSEVQGYLFSKPVPAAQVGALLAR 824 >gi|171059262|ref|YP_001791611.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170776707|gb|ACB34846.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 1066 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 146/578 (25%), Positives = 263/578 (45%), Gaps = 14/578 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + H LA R L A+ + D V D+ V+ I G + Sbjct: 480 SDMSHALAQFTREAQWQESLARTRLHAAALESTQDGVMVTDLRPRIVSVNRAFTEITGYS 539 Query: 442 SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G R H + F + + + + GR Q E + R + + + + + Sbjct: 540 ETEAVGMSPRLLQSGRH--EPAFFTRLWNQLLTH--GRWQGEVQNRRKNGELYTQWMSVS 595 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + + Y+ + DIT QK++ + + A D LT +PNR L RL + +A Sbjct: 596 TVRDEHDQPTHYVSVFTDITPQKEAEQRLQHLAHFDPLTQLPNRLMVLSRLEHAIASAAR 655 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + R V+ ID+D +K +ND LG + GDD+L ++ R+G + D L RL G+ F ++ Sbjct: 656 AER-RVAVLFIDLDNFKTVNDSLGHSAGDDLLRAVADRLGTRTRREDTLGRLGGDEFILM 714 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L A A + + P + +E+ V ASIG + + + E++++A+ A Sbjct: 715 LEHLREPQDAAQVAQELIGLLETPFRVAGQEVYVQASIGISLYPDDGLEVGELVRDADAA 774 Query: 681 MYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G + S + R+ + L A+EN E L Y P+ RL D ++GL Sbjct: 775 MYQAKRAGRGVYRFYTESLTTAAQSRLALDTRLRRALENKEFVLWYQPLYRLADRCLIGL 834 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++ + P I +EF+ + EE I + ++ + R +W D+ I I Sbjct: 835 EALVRLNQPGLPPIGPAEFIPLLEETGQITTLGAWVTQEACRQGRAWLDEGLDFG-RIAI 893 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ +++ + E ++ + ++ R++L +ES +M ER+ L RLR +G+ L Sbjct: 894 NLSPQEIRRGQTDERVREALERSGLPAERLELELTESGLMEQGERAEAFLHRLRALGVRL 953 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 +DDFGT S L+YL P +K + S + ++++++ M +N+ +++A+ Sbjct: 954 AIDDFGTGYSSLAYLKRFPVSKLKIDRSFVRDLPADANDAQLVQTMVSMGRNLGISVLAE 1013 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E L +GCD Q + P + L+ Sbjct: 1014 GVETEAQFDYLRSLGCDAAQGYFFSPPRPADEARHWLR 1051 Score = 50.3 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 64/199 (32%), Gaps = 33/199 (16%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + L L + L+G +++ + + + D+ + +D Sbjct: 175 QRWLTLFTLGLLSALAITLMGV-LMRLSRQRNESDAALAASEAHLRTFMRAMPDVSFLFD 233 Query: 423 IVRDRVTT-TPD------IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 + P + +LG +HG + F +++ + R Sbjct: 234 RDGRYLDVFGPAEKLAEPVERMLGRRIADVHGERH----------VELFMSVIRLALETR 283 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 + + EF + W R+ + + + + ++ DI+E++ + + Sbjct: 284 EPQ-RCEFALEVQQGT-RWFEARVCAVPDRE----QVVWVSWDISERRAAELRVT----- 332 Query: 536 DNLTGIPNRQSFLDRLTTI 554 LT + SF+ ++ Sbjct: 333 -ELTRLY---SFISQVNQA 347 >gi|209519031|ref|ZP_03267839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. H160] gi|209500543|gb|EEA00591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. H160] Length = 1028 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 151/555 (27%), Positives = 267/555 (48%), Gaps = 14/555 (2%) Query: 407 QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 QS A+ S + + + + P I G + G L +DRD Sbjct: 469 QSRALDASVNAILITAPSPSGNLIEYVNPAFMRITGYDPAEVIGQDCRVLQR---DDRDQ 525 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + R + R D W + I P+ N+NG I +IG+ ND+TE Sbjct: 526 EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNANGVITHHIGVINDVTEL 584 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + E + A D LT +PNR DRL L ++ + V+ +D+D +K +ND Sbjct: 585 IRYQEQLEYQANYDGLTRLPNRNLLRDRLEHALVVAQRH-HAGVAVVFLDLDGFKNVNDS 643 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +VGD +L + R+ + D +AR G+ F I++ + + + +R SIA Sbjct: 644 LGHSVGDRLLGVVAERLARCSRTSDTVARHGGDEFVIVMTDVVDEQSLIAWMERVRASIA 703 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P+ L E+ V S+G + + + ++K A++AMY AK G N + ++ S Sbjct: 704 EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADVAMYRAKDMGRNTYQFYQPEMNAS 763 Query: 703 D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ ++ L A+ + E L Y P + + +IVG+EAL++W P+ G + S F+ + Sbjct: 764 AGARLNLERRLRRALRDKEFLLHYQPQVDIGSGQIVGIEALVRWHDPEVGLVPPSSFIPL 823 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I ++ ++L R +W+D+ PP + +N++++ ++ + + ++ + Sbjct: 824 AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARVFQQRDIAKLVMQVLDE 882 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P ++L +ES +M N E + +L L +GI L +DDFGT S LSYL P D Sbjct: 883 TGLEPKYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 942 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S ++ + I +II +A +++ +IA+ + + L CD +Q Sbjct: 943 LKIDRSFVSDIGVSGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLRERACDEMQGF 1002 Query: 939 HVASPLGFNSILKLL 953 + A PL +I +LL Sbjct: 1003 YFAKPLSTEAISELL 1017 Score = 52.3 bits (124), Expect = 5e-04, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 16/167 (9%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 L + F + V + + ++ D+ + Sbjct: 314 LNFVGRDASFVLADDVTDQINAEAEAQRSNQMLEAVIDNIPQRIFWKDLNSRYLGCNMAF 373 Query: 435 ATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 A GLA + G P R + + +D + T + + +F + Sbjct: 374 ARDAGLAYPEQVVGKSDADLPWRAFADMLTEHDHEVASTGVPKM------NFEVDFMI-- 425 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 D I P ++ +G ++ +G DITE+K++ + + Sbjct: 426 -DGVHRTTITSKLPFTDVDGRVIGVLGSYTDITERKRADLALRLQSR 471 >gi|332702442|ref|ZP_08422530.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] gi|332552591|gb|EGJ49635.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] Length = 1249 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 150/577 (25%), Positives = 274/577 (47%), Gaps = 11/577 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + Q + S + D + + + G Sbjct: 672 LFSLMDLSDVKQAEQALVEQRAFFQELFESSPLGIMLLDTEGQILNVNRGLERLFGYGRE 731 Query: 444 SMHGPIRNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + +R V R Q E + + + + + P+ Sbjct: 732 ELRGHFS--RSALVPEERAMEAENFFRLVVAGR--PFQSETWRKHKNGELIPVSVVGYPV 787 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G I I +DI+E+K E + AF D LTG+PNR F +RL L+ + Sbjct: 788 LME-GKIKGVYSIFSDISERKAFEEQLTHQAFHDALTGLPNRLLFHERLERALERAKRRP 846 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + R V+++D+D++K +ND LG GD++LV ++RR+ L+ D +ARL G+ FG++L Sbjct: 847 DYRFAVLLVDLDRFKWVNDSLGHMAGDELLVGISRRMECCLRSMDTVARLGGDEFGVLLE 906 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 N +I + I P + + +ASIG T +T+ ++L++A++AMY Sbjct: 907 EFRNHREIVQITKRILSVIEEPFIVEGTTVFTSASIGMVLRTREYMTAEDLLRDADIAMY 966 Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G + F + + ++ +L AV+N EL + Y PI+ ++ + G EA Sbjct: 967 RAKEMGKARFKVFNRLMHENAVRVLRLETELRHAVQNEELRVHYQPIVSVLSGRLEGFEA 1026 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILIN 799 L +W+HP+ G + +EF+ +AEE +I ++ ++L R + W + + + +N Sbjct: 1027 LARWEHPERGLVQPAEFIPLAEETGLIVSLGKWILTEACRQLACWDVECPEACGLNMSVN 1086 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 I+ K L+ +L E +Q ++ +T +P R+KL +ESVVM + + + L L+ +G++L Sbjct: 1087 ISGKQLMQEDLVEFIQGVLRETGIAPQRLKLEITESVVMQDVKATVDKLNELKTLGVALV 1146 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S ++G T + I+R+I+ +A+N+ ++A+ Sbjct: 1147 IDDFGTGYSSLSYLQRFPIDMLKIDRSFISGLQGTGDNLEIIRTILSLARNLGLGVVAEG 1206 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + ++ L + CD Q + P+ L++ Sbjct: 1207 VELASQLQTLRDLDCDEAQGFMFSRPVAREEAKALIR 1243 Score = 40.3 bits (93), Expect = 1.6, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 12/98 (12%) Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 P G ++ G + + N ++ + R E AD Sbjct: 476 CNPAAEAAFGYNQANLAGKPLSTILG------GNGSGLMRELLAGR----SLEVLCHRAD 525 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + +G IG DITE++++ E Sbjct: 526 GSRFPAEALVTEATTGSGR--FCIGTFRDITERRRAEE 561 >gi|313200326|ref|YP_004038984.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312439642|gb|ADQ83748.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylovorus sp. MP688] Length = 984 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 139/614 (22%), Positives = 269/614 (43%), Gaps = 13/614 (2%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + I +I+ V L I + + + Sbjct: 373 FVIIPIFVHAHWWGVIMIERDHAASTVTSQELGALMSIGRSFGVAIQRESSDHRLHQAKI 432 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTI 467 A + + ++ D + I G + G I N L Sbjct: 433 AFESTAEGIFITDDELRTIAINQGFTDITGYTEDDVLGNIPNVLEADLKKPEPHREIWKA 492 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L R GR + EF + +N+ + + + ++N G ++ Y+G+ DI+E K S Sbjct: 493 L-----TREGRWRGEFWNQRKNNEQYAEWVTLTAVNNEEGKVINYVGVFADISEIKHSQS 547 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + +D LTG+PNR+ + L + + + N ++ +D+D++K IND LG + Sbjct: 548 RLNELVNRDPLTGLPNRRLMHELLDHAIKYAEREQN-EIALLFVDLDRFKAINDTLGHQM 606 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L +++RI ++ D +ARL G+ F +++ A A + S+ + Sbjct: 607 GDKLLFEVSQRIRAAVRDSDAVARLGGDEFIVMMDVLREREDAAKVAKKIISSLQNEFLI 666 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRV 705 RE+ ++AS+G + + + ++K A++AMY K++G N+ + +R Sbjct: 667 DGRELFISASVGISVYPDDSLDVDGLIKAADIAMYQVKNKGKNNHCFYSADLSQNAVERF 726 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ L A+ + + Y + L I+G E+LI+W HP+ G +S ++F+ +AEE Sbjct: 727 TLENQLRRALARDQFEVYYQAQVSLETGRIIGAESLIRWIHPELGVVSPAKFIPLAEETG 786 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++L + A + W DQ ++ +N++ + + + + ++ +T Sbjct: 787 LIIPIGEWVLRQSAMQVKEWHDQGFDID-WVSVNVSGVQIQRSNFADTVYGILVETDCES 845 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++L +ES VM N E + R++ +G+ L +DDFGT S LS+L +P D +K + Sbjct: 846 HLLELEITESTVMHNTEYVIDVFDRIKHLGVRLAIDDFGTGYSSLSHLKRLPLDKIKIDQ 905 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + AI +I MA+++ T+IA+ + L ++GC Q + P Sbjct: 906 SFVRDLPNNSDDAAIATAINAMAQSLGFTVIAEGVETRQQASFLKKIGCQQGQGYLYSRP 965 Query: 944 LGFNSILKLLKERF 957 + + LL+ Sbjct: 966 VTASEFTALLRAEQ 979 Score = 43.4 bits (101), Expect = 0.20, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 5/156 (3%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445 +Q V + S + S D + D + ++L L + Sbjct: 106 MQDVTERFASEYELRSMLNLLRKLIDASPDYICLKDGAGRWLHANTSGLSLLHLNGVNTQ 165 Query: 446 HGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 R H N RD + D +V L+ E V + + P+ Sbjct: 166 GKTDRELADLTHPNLRDFMQHWQAADEYVWETGQLLREEETVPLPGGD-RVLDVIKVPLF 224 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538 + +G + + DIT++K+ + A D L Sbjct: 225 HDDGSRHGIVTLGRDITDRKQVESQLRQRSAILDAL 260 >gi|153002528|ref|YP_001368209.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151367146|gb|ABS10146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS185] Length = 1508 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 145/555 (26%), Positives = 274/555 (49%), Gaps = 18/555 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465 + + V + + P I G + +IH R+ F Sbjct: 958 VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 TI + ++ E +R Q + + I + + G+ ++ + DIT++KK+ Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L ++ RR+ ++ D +ARL G+ F IIL + + + ++ P Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L ++ +T++ SIG + + + + ++K A+ AMYHAK G N+ + + + + Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 V ++ L A++ +EL LVY P L D + G+EAL++W H + G IS EF+ +AEE Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKDGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++ + + + W I + +N++++ L ++ ++ ++ + Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + AI +II +A +++ ++A+ + + + L GCD +Q ++ Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487 Query: 942 SPLGFNSILKLLKER 956 PL L LLK + Sbjct: 1488 KPLSAADFLTLLKNQ 1502 Score = 103 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 F I + ER LA+ SGD +WDW+I ++V T ++I S ++ Sbjct: 822 REFETSIRASEERLKLALWASGDGMWDWNIPENQVYRTNMDSSIPHWNSSNIVH------ 875 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRY 512 +H DR+ F+ L+ + R + E+RV + + W++ R + + +S + +R Sbjct: 876 ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDNPIRM 935 Query: 513 IGIANDITEQK 523 G +IT +K Sbjct: 936 TGTNRNITSRK 946 >gi|114776422|ref|ZP_01451467.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1] gi|114553252|gb|EAU55650.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1] Length = 644 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 144/637 (22%), Positives = 267/637 (41%), Gaps = 14/637 (2%) Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 +I+ + L P + ++ +V +++L G Sbjct: 9 MIWLAILLAFVYWFLEPTIYAFVLQKGTFTDKWLHPDAEEL---RTRMSVVSLLLLFGVY 65 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + + ++ + + D D P I G Sbjct: 66 AQTMLKRQQQIMESLQASKQKIRQIIDTANDAFITIDAEGSISDWNPMAEMIFGWPEDLA 125 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPM 502 G L ++ R+ + F+ Q D + I P Sbjct: 126 IGKSMMDL-IMNQAPRNALIDDIQEFINTGSAPFTQGQIVITALHRDGHEFPAEMSISPQ 184 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G + DI+++K E + A +D LTG+ NR S+ L + L+ Sbjct: 185 --AVGASFIFNIFVRDISQRKADEEKLETLATRDELTGLINRFSYNHLLKKEVALAKRH- 241 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 V+ +D+D +K IND LG VGD +L R+ ++ D +AR+ G+ F II+ Sbjct: 242 MESLAVLFLDLDGFKNINDSLGHDVGDQLLRETANRLSACIRESDTVARIGGDEFLIIMP 301 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + I P + +E V ASIG + + ++KNA+ AMY Sbjct: 302 GIKDVHDPRFLCERILNMIGQPYLIGTQECFVGASIGISLYPLDGDNVESLVKNADTAMY 361 Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N + F + R+ ++ L A+E ++ L+Y P + L I+G+EA Sbjct: 362 QAKDSGRNAYKFFTPAMGEEAFKRMEMERALRYAIEKNQFKLLYQPQVELSSGRILGVEA 421 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+WG IS S F+ + E +I I ++L+ + +W+ P+ + +N Sbjct: 422 LLRWTHPEWGPISPSVFISLIENTNLILPIGEWVLDEACKQNKAWQALHPGFPLRMAVNF 481 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 A++ +L E + + K+ + ++L +E M + E + + L+++G+S+ + Sbjct: 482 AARQFAQADLVETVAKALQKSGLAAEFLELEITEGSAMNDIELNIRKMQALKELGVSIAI 541 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P D +K + S + +K AI+ +I MA ++ +IA+ + Sbjct: 542 DDFGTGFSSLAYLKRFPIDILKIDKSFLDEIQHGKKDAAIVATISEMAHSLGMEVIAEGV 601 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++ L GCD IQ + P+ I ++L++ Sbjct: 602 ETKYQLEFLRGHGCDMIQGYLFSRPVPPEQIAEILQK 638 >gi|160877248|ref|YP_001556564.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160862770|gb|ABX51304.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS195] gi|315269453|gb|ADT96306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS678] Length = 1508 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 145/555 (26%), Positives = 274/555 (49%), Gaps = 18/555 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465 + + V + + P I G + +IH R+ F Sbjct: 958 VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 TI + ++ E +R Q + + I + + G+ ++ + DIT++KK+ Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L ++ RR+ ++ D +ARL G+ F IIL + + + ++ P Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L ++ +T++ SIG + + + + ++K A+ AMYHAK G N+ + + + + Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 V ++ L A++ +EL LVY P L D + G+EAL++W H + G IS EF+ +AEE Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKDGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++ + + + W I + +N++++ L ++ ++ ++ + Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + AI +II +A +++ ++A+ + + + L GCD +Q ++ Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487 Query: 942 SPLGFNSILKLLKER 956 PL L LLK + Sbjct: 1488 KPLSAADFLTLLKNQ 1502 Score = 104 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 7/135 (5%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 F I + ER LA+ SGD +WDW+I ++V T ++I S ++ Sbjct: 818 RQQQREFETSIRASEERLKLALWASGDGMWDWNIAENQVYRTNMDSSIPHWNSSNIAH-- 875 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGD 508 +H DR+ F+ L+ + R + E+RV + + W++ R + + +S + Sbjct: 876 ----ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDN 931 Query: 509 ILRYIGIANDITEQK 523 +R G +IT +K Sbjct: 932 PIRMTGTNRNITSRK 946 >gi|114319850|ref|YP_741533.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114226244|gb|ABI56043.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 723 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 139/606 (22%), Positives = 268/606 (44%), Gaps = 17/606 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 R ++ I+ +L + + + V S D ++ Sbjct: 112 RGASEFIRKPFAPEAMLATLENTLERRRLSRQNEQIRHRLKRSERLYRFIVDNSPDFIYV 171 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D +LG+ ++ G ++ I DR + +R Sbjct: 172 LDAEGRFTFINRSAERLLGMTPDTLLG--EHFQCLIADEDRAVAERRFNERRTGQRATHN 229 Query: 481 YEFRVRAAD--NQF-HWMIIRIRPMSNSN-----GDILRYIGIANDITEQKKSLEGILCN 532 E ++ Q + + + G L GIA D+T++K + + Sbjct: 230 LELQLAPPGAAGQPTRTVDLTAMGIYADGDAPHPGQFLGTYGIARDVTDRKHAESIVHYQ 289 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D LTG+PNR DRL L + N V+ +D+D++K +ND LG +VGD +L Sbjct: 290 AHHDLLTGLPNRALLKDRLAQALARARR-GNEEVAVLFLDLDRFKVVNDSLGHSVGDQLL 348 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + +R+ L+ D LARL G+ F ++L + + + A ++ P + + Sbjct: 349 QQVAQRLRACLREGDTLARLGGDEFTLLLPAIPDRPAVERVAQKCIDALEQPFMVHNHRL 408 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKED 710 + SIG A + T ++K+A++AMYH K G H F + + ++ Sbjct: 409 FLGVSIGIALFPEHGETLETLIKHADVAMYHVKEHGKGHYTFFDQAMGSRIDHHLNMETG 468 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A+E E + Y P + ++ + G+EALI+W HP+ G +S EF+ +AE+ +I I Sbjct: 469 LRRALEQHEFRVAYQPQVDVVSGRVTGMEALIRWQHPETGEVSPREFIPVAEQTGLILPI 528 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L +++ W D + + +N++ + + + ++A+ +T + R+ L Sbjct: 529 GEWLLRSACEELLRWPD--GNEGLRLAVNLSPLQVHQRDFVDRVRAICDETGFPLRRLDL 586 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +E+++M + E L L ++G+++T+DDFGT S L YL +P +K + S + Sbjct: 587 EITENLLMRDVESVVEKLRTLSRLGVTITIDDFGTGYSSLGYLQRLPIHALKIDQSFVHA 646 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 E++ ++ +II MA + ++A+ + + + L R+ C +Q + + PL + Sbjct: 647 IRENEEKGTLVETIIAMAHGLGLNVVAEGVETKRQLDYLRRLQCGRMQGFYFSYPLSGHE 706 Query: 949 ILKLLK 954 + LL+ Sbjct: 707 AVDLLE 712 >gi|23957808|gb|AAN40821.1| unknown [Synechococcus elongatus PCC 7942] Length = 592 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 152/573 (26%), Positives = 278/573 (48%), Gaps = 8/573 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +I + + + ER L D+V + +P +LG +S Sbjct: 19 GLIIDISDRKKIEAELQTSEERYRLLAENMNDLVCLHQADGTYLYVSPSAEALLGFSSEE 78 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 M G + H D D R V L +R+R + W +P+ + Sbjct: 79 MVGQNPY--DFFHPEDCDRIRDEAHQAVL-MGAELPIVYRMRKKLGGYIWFETLTKPIMD 135 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G ++ + D+T++ + + +A D+LTG+ NR ++RL L S N Sbjct: 136 DQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERLELSLKRSKRLQNY 195 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D++K IND LG GD +LVS+ +++ +++ D+ ARL G+ F +++ Sbjct: 196 KYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAARLGGDEFVVLVEDI 255 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A + +I +P+ L ER I + SIG + +++++L++A+ AMY A Sbjct: 256 QTFDEPIKVAERILAAIQVPLELEERSIYTSTSIGIVFGSHEYESATQLLRDADTAMYRA 315 Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG E F + S R+ ++ DL A+ E L Y PII+L +I G EALI Sbjct: 316 KSRGRARYEVFDSAMHSQALARLHLENDLRQAIARQEFVLYYQPIIQLQTGKITGFEALI 375 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIA 801 +W HP G + + IAEE +I +I+ ++L + R + W+ + + + +N++ Sbjct: 376 RWQHPTEGIKLPIDLIPIAEETGLITSIDYWVLNQACRQLSEWQASYSQAADLSMSVNLS 435 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 +++L + L + +Q+++ T P + L +ES+++ N +++ LL + + GI +++D Sbjct: 436 AQNLQHDHLMDEIQSVLQATKIKPGSLTLEITESMLIENTDQTIQLLAAINEQGIEISID 495 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL +P + +K +GS + T + I+ +II + + IA+ I Sbjct: 496 DFGTGYSSLSYLHKLPVNNLKVDGSFVRKITTESTNYQIVNTIIALNNQLGLKAIAEGIE 555 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + L+++G Y Q A PL + +L Sbjct: 556 THEQLDLLSQLGYQYGQGYLFARPLNAKDVEQL 588 >gi|291612794|ref|YP_003522951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291582906|gb|ADE10564.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 812 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 166/643 (25%), Positives = 284/643 (44%), Gaps = 32/643 (4%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY--- 395 LLI I++ I + R I++ + + + V + Sbjct: 170 LLILGHIMLQILLFFAINWLINRFTRPIVKLQSTMESMQLSGSMEQFVPVKLEQGEQDEI 229 Query: 396 ---------FSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 S+ + + LA + D + D V P I G Sbjct: 230 GKLGLAFNQMSEALSNSERSMKLAASIYQSNADAIMVTDENNLIVDVNPAFTRITGYTLD 289 Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G R H D + +R + + + G Q E + + + + I + Sbjct: 290 EVRGKNPRIMQSGKH--DNEFYRHMWQAILNE--GHWQGEIWDKRKTGEIYAKLAHISIL 345 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 S+G + R++ +DITE+K+ E I A D LT +PNR+ DRL L + ++ Sbjct: 346 RRSDGGVYRHVAQFSDITEKKQKDELIFWQANYDALTCLPNRRLLNDRLAHALAANKRNE 405 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + +M +D+DK+K +ND LG A GD +LV + RRI ++ D +AR+ G+ F ++L Sbjct: 406 DC-GALMFLDLDKFKTLNDTLGHAYGDMLLVEVARRIKSCVREVDTVARIGGDEFVVLLE 464 Query: 623 SE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 + + + A A +R S++ P L ++ + SIG + + ++ E++K A Sbjct: 465 NLGADIKDATQAAAHIAEKIRASLSTPYQLHDKMHHSSPSIGVSLIHCNGESAEELIKQA 524 Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK G N V F + ++ DL AV +L L Y + Sbjct: 525 DMAMYQAKEAGRNAVRFFDPQMQQSVETIAALESDLRHAVHERQLQLFYQIQLDH-THHP 583 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EAL++W HP G +S ++F+ AEE +I I ++L+ R I +W Q + Sbjct: 584 VGAEALLRWIHPVRGMVSPAQFIPFAEESSLILDIGHWVLDEACRQIAAWSHQERTRDLV 643 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-I 854 + +NI+++ + E + A+I K P+R+KL +ES+ + + + LR + Sbjct: 644 LAVNISARQFKQPDFVEQVGAMIRKHAIQPARLKLELTESIALEELDVIITKMHALRNGL 703 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 GISL+LDDFGT S LSYL +P D +K + S + ++++II MA N Sbjct: 704 GISLSLDDFGTGYSSLSYLKRLPLDQIKIDQSFVRDMTVDSGDAVMVKTIIDMAHNFGIE 763 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + L + GC Q P+ LL++ Sbjct: 764 VIAEGVETAGQFFLLKQYGCLLFQGYLFGRPVPLREFEALLQQ 806 >gi|119896980|ref|YP_932193.1| GGEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72] gi|119669393|emb|CAL93306.1| GGEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72] Length = 818 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 145/583 (24%), Positives = 267/583 (45%), Gaps = 17/583 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 L G +Q + Q + + +G+ V D + I Sbjct: 244 AALAGIGTVQDITDRKLAEQSLRQA----ATVFENTGEGVIIADAKNRIIAVNRAFTVIT 299 Query: 439 GLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G N L H D + + + G Q E R + + ++ Sbjct: 300 GYGPEEVIGRSPNLLRSGRH--DAAYYDAMWRGV--HEAGHWQGEIWNRRKNGEIFPELL 355 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + + NG + Y+G+ +DI+ K++ + A D LT +PNR RL ++ Sbjct: 356 TLSVVRDHNGKVSHYVGVFSDISRMKETEARLQRLAHYDALTDLPNRVLLNLRLAHGVER 415 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + V+ +DID++K +ND LG VGD++L+ + RR+ ++ D LARL G+ F Sbjct: 416 VQRSGEM-LAVLFLDIDRFKNVNDSLGHPVGDELLIEIARRLRSRIRAEDTLARLGGDEF 474 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKN 676 I+L ++ +ADFA + + L +E+ V ASIG + + +++++ N Sbjct: 475 VILLDRIRSANDVADFAQEIIDLLNQSFQLASGQEVFVGASIGISLYPLDTDDATQLISN 534 Query: 677 AELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ A+Y AK G N + +R+ ++ L +E E L + P++ L E Sbjct: 535 ADAALYQAKEAGRNVYRFYTADLTRAAHERLGLEAALRRGLERGEFVLHFQPVVALDKGE 594 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG EAL++W+HP G I+ F+ +AEE +I + ++LE R W D P+ Sbjct: 595 VVGAEALVRWNHPTEGMIAPLRFIPLAEETGLIVPLGEWVLESACRQGREWLDCGR--PL 652 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N++++ +L ++ ++ +T + + ++L +ES VM + +R+ L L+ + Sbjct: 653 TIAVNLSTRQFRAGDLTATVRDILDRTGFPAALLELEITESTVMEDADRAVATLAALKGL 712 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ L++DDFGT S L+YL D +K + S + E I+ +++ MA + Sbjct: 713 GVRLSIDDFGTGYSSLAYLKRFAVDALKIDRSFVRDIADDENDRMIVATVVAMAHQMRLG 772 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L +GC+ Q V P L ++ Sbjct: 773 VIAEGVETAEQLAFLRSLGCEAYQGYLVGRPQAAADFLGAVER 815 Score = 83.1 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 4/151 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + V ++ + E A + W D V ++ + + + G A G Sbjct: 124 VGISRDVTVFRETAEALRRSQENLERAQAVARTGSWYVDFVSGQMDWSAETCRLFGQAPG 183 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 +L +H D+ V RG RV + W+ R Sbjct: 184 C-VPSYELFLSVVHPEDQALVEAAWRQAVA--RGDYDLTHRVI-VGGEVRWVHERAEFRR 239 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++G L IG DIT++K + + + A Sbjct: 240 AADGAALAGIGTVQDITDRKLAEQSLRQAAT 270 Score = 42.6 bits (99), Expect = 0.33, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 3/121 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + D+V+ D + G + G L + D Sbjct: 21 LRALIDVIPDLVFFKDEAGRYLGCNRAFEAYTGRREAELIGYTDRDLFDLSTADSYRGYD 80 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 ++ + R E + D + + P ++ +GI+ D+T +++ Sbjct: 81 --NAVLASGRSSRNEE-WIVYPDGRRVLVDTLKTPFRDAASGRRGVVGISRDVTVFRETA 137 Query: 527 E 527 E Sbjct: 138 E 138 >gi|329911378|ref|ZP_08275486.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae bacterium IMCC9480] gi|327545945|gb|EGF31041.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae bacterium IMCC9480] Length = 831 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 157/599 (26%), Positives = 276/599 (46%), Gaps = 12/599 (2%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 + ++ +P L + G + V+ + + S Sbjct: 230 HRYDWQYLSNQGKPFWTEVLSTDIPAAGQRLQYVVVRDISTRKAAEMSLHLAARVFENSQ 289 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGY 474 + + D R ++ + I G + + G L H D+ F+ IL+S + + Sbjct: 290 EGIMIADEHRRVISINRALTDITGYTADEVIGNPPQILCSGTH--DKALFQAILESVLKH 347 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 Q E R D + + + + + + +S+ +L YIGI DI+++K S E + A Sbjct: 348 --DHWQGELWGRHRDGRGYPLWLSVTAVRDSHHAVLNYIGIVTDISDRKASEEQMRHLAE 405 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LTG+PNR LDRL + ++ R V+ +D+D++K IND G VGD +L + Sbjct: 406 HDFLTGLPNRVLLLDRLQQAIAVAERS-RTRLAVLFLDLDRFKNINDSFGHHVGDKLLQT 464 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + R+ + ++ D ++RL G+ F I+L+ + IA A + ++I P ++ E +V Sbjct: 465 VAERLKKCVRGIDTVSRLGGDEFVIMLVDTGSGEPIAHVAGKILQAIGTPYSIEGCEFSV 524 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712 T IG +++ + ++K+A+ AMYHAK +G N + F ++ L Sbjct: 525 TTCIGVSTYPADGTDMDVLIKSADTAMYHAKSKGSNRYQFFNNDMNTRVVERIVLEHSLR 584 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+++SE L Y P I + ++G EALI+W HP G + F+ +AEE +I I Sbjct: 585 SALKSSEFILEYQPQIHIASNRLIGAEALIRWRHPTLGRMMPDRFITVAEECGLIVPIGD 644 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L + +W+DQ + + +N++ L + + P ++L Sbjct: 645 WALRQACLQARAWQDQGLE--LVMAVNLSVAQFHQQNLVRSVTDALQAARLEPQWLQLEI 702 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +ES++M + + +L LR +GI L +DDFGT S LSYL IP D +K + S + Sbjct: 703 TESIMMEEAKGAIDMLRSLRDLGIRLAIDDFGTGFSSLSYLKRIPIDKLKIDQSFVRDIT 762 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + AI+ +II MAK++ T+IA+ + + L GCD Q + L Sbjct: 763 LDPEDAAIINAIIVMAKSLNLTVIAEGVETLEQFRFLEAHGCDEYQGFLASKVLSVADF 821 Score = 41.1 bits (95), Expect = 0.92, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 46/157 (29%), Gaps = 15/157 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-- 441 F + + Q + + G S D + + + P + G A Sbjct: 133 FCMDIDISVRKREEQALLTVGANFRTLFDNSSDAIMLLE-DNHFLDVNPAALALFGYASK 191 Query: 442 -----SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 S + D+ L ++G +Y+++ + + W Sbjct: 192 TDMVGRASAEISPPQQPDGLASADKSRQMQDL----VQQKGNHRYDWQYLSNQGKPFWTE 247 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + + + + DI+ +K + E L A Sbjct: 248 VLSTDIPAAGQRLQYVV--VRDISTRKAA-EMSLHLA 281 Score = 40.3 bits (93), Expect = 1.7, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 25/152 (16%) Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 A I G+ + G N L H++ F T+++ + L +++VR Sbjct: 52 WNATSAGIYGIVARDAIGKPLNQL-LQHVDKEAEFATMVEHIWQTGQPVLPRDWQVRTVT 110 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN-RQSFL 548 W+ + P+ + + + DI+ +K+ A LT N R F Sbjct: 111 GHELWVYSTMFPVF-RQNAVHQIFCMDIDISVRKR-----EEQAL---LTVGANFRTLF- 160 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 DN +M+++ + + +N Sbjct: 161 -------------DNSSDAIMLLEDNHFLDVN 179 >gi|113971961|ref|YP_735754.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113886645|gb|ABI40697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 1504 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 145/555 (26%), Positives = 273/555 (49%), Gaps = 18/555 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465 + + V + + P + I G + + IH RD F Sbjct: 958 VLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKY-----LIHLAYSRQQRDLFN 1012 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 I + ++ E +R + + + I + + G+ ++ + DITE+KK+ Sbjct: 1013 GIEQQLLRHK--HWAGEIWIRNKARKAILVWLEINQVIDVKGETSHFVAVFTDITERKKA 1070 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNI-VALLFLDLDRFKHINDSMGH 1129 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +GD +L ++ R+ ++ D +ARL G+ F IIL + + + K+ P Sbjct: 1130 HIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF 1189 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L ++ +T++ SIG + + + ++K A+ AMYHAK G N+ + + + + Sbjct: 1190 LLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATR 1249 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 V ++ L A+ +EL LVY P L + + GLEAL++W H + G IS +EF+ +AEE Sbjct: 1250 HVQLEAGLKQAISRNELSLVYQPKFCLRNGSLTGLEALLRWHHSELGPISPTEFIPLAEE 1309 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++ + + W + I + +N++++ L ++ ++ ++ + Sbjct: 1310 TGIINQIGHWVINHACQQLAEWNELGLG-DISMAVNLSARQLK-ADIISTIEVALAVSGL 1367 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K Sbjct: 1368 PAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + AI +II +A ++E ++A+ + + + L GCD +Q ++ Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1487 Query: 942 SPLGFNSILKLLKER 956 PL L LL++R Sbjct: 1488 KPLSAQDCLALLQQR 1502 Score = 101 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 I + ER LA+ SGD +WDW+I +V T + S S+ H Sbjct: 827 SIRASEERLKLALWASGDGMWDWNIQEQQVYRTHTDIPVPQWNSHSLLHDNA------HP 880 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517 DR+ F+ +L + R + E+R+ + + W++ R + + +N+ +R G Sbjct: 881 EDRERFKQVLTEHLLGRSPFFEVEYRIEHSPGNWLWILERGKVVETNAQAQPVRMTGTTR 940 Query: 518 DITEQK 523 +IT +K Sbjct: 941 NITSRK 946 >gi|117922460|ref|YP_871652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. ANA-3] gi|117614792|gb|ABK50246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. ANA-3] Length = 1228 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 165/595 (27%), Positives = 285/595 (47%), Gaps = 16/595 (2%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 A+ L+ G +I ++ + + + SG+ + D V Sbjct: 643 AVRLNGSLVTAANGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGITIMDANDIIVD 702 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVR 486 I G + + G +L DR R L+ G Q E R Sbjct: 703 VNSAFTQITGYSRDEIIGKNCRFLEA-ERTDRSIDAQVRAALEQ-----TGFWQGEVWDR 756 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + + + + G I YIG DI+E+K + E I A D+LT +PNR S Sbjct: 757 HKEGFDFPKWLMMSIVRDETGAISHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLS 816 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 RL + + + VM ID+D +K IND LG VGD +L+ + RR+ ++ Sbjct: 817 LQSRLEKVFQEAFISQ-TQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIMGND 875 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 DI+ARL G+ F ++L S+ + ++A A A+R + + + + + SIG + + + Sbjct: 876 DIVARLGGDEFVVVL-SDTDHDRVAKVAEALRSGLNQTYLIDNKPLHSSPSIGISLFPTD 934 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724 + ++KNA++AMY AK G N+ + F +++ ++R I+ L A+ +EL L Y Sbjct: 935 GDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLVTERQQIETGLRQAIACNELLLYY 994 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P + + ++VG+EALI+W HP+ G ++ F+ IAEE+ MI I ++LE + Sbjct: 995 QPQVDISSGQVVGVEALIRWQHPELGLVAPDRFIPIAEEIDMIIPIGQWVLENALAQLAE 1054 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 WRD+ + + +N+++ L + + + +++K ++L +ESV M PE++ Sbjct: 1055 WRDK-GAKGLRMAVNLSAHQLRKDTIVADIINVLTKHKLGKGALELEITESVAMQYPEQN 1113 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 LL LR+ GI L +DDFGT S LSYL +P D +K + S + AI + Sbjct: 1114 AKLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKDIESDPNDAAISAAT 1173 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 I MA + T++A+ + E + L+ MGCD +Q + + PL + + ++ F Sbjct: 1174 ISMAHELGLTVVAEGVENEAQLVLLSGMGCDLVQGYYFSKPLAADDCFRFIERNF 1228 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 7/153 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLA 441 + + + + F + +R + + V I G Sbjct: 534 TMALSKEIARSQTFQATLMESEQRYRTLFDKAPVGHALKRLEDGQFVAINQAFMEITGYT 593 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500 + + I + + L+ RR G Q +R D Q + + Sbjct: 594 LEEL--QAIDPWELTPIRYQSSETEQLERLKQTRRYGPYQKHYR--HKDGQLVAVRLNGS 649 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 ++ +NG+ L + I DITEQ++++ + A Sbjct: 650 LVTAANGEQL-ILFIVEDITEQERTVARVNLLA 681 >gi|115265648|dbj|BAF32909.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. phaseolicola] Length = 1067 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 499 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 557 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 ++ R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 558 ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 615 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 616 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 674 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 675 KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALNRAIH 734 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 735 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 794 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 795 QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 854 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + NI+++ D +L Sbjct: 855 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKQWHQARVRVP-KVSANISARQFSDGQL 913 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 914 GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 973 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA + ++IA+ + ++ L Sbjct: 974 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHRLNLSVIAEGVETHEQLEFLR 1033 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ + Sbjct: 1034 EHDCDEVQGYLFGRPMPASQFEA 1056 Score = 76.5 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 350 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 409 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 410 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 467 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + NG+ G+ DI++Q+++ + + A Sbjct: 468 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 511 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 217 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 276 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + +H +D +++ + L LQ R R +N + +R + Sbjct: 277 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 336 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ I R IGIA DITEQ + S + A Sbjct: 337 ALAWDAENLITRIIGIAKDITEQVASSQSLRDSEQRYRMLA 377 Score = 38.0 bits (87), Expect = 8.2, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 34/188 (18%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425 A + G LI +L+ + +++ + + R G+G + D+ Sbjct: 43 LAPLIGKCLIGLLLSILPLIALMSLRKRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 102 Query: 426 ----DRVTTTPDIATILGLASG----------------------SMHGPIRNWLPYIHIN 459 V T D +L + + W P I Sbjct: 103 QLEALEVRTDEDFELLLKSQPASLKRLLQQLRINELNEVALGLLEIEHSEQAWQPLIEGE 162 Query: 460 DRDN---FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R ++ + + RL+ E + A Q + + +R + S D I Sbjct: 163 SRSRPGIGVQVIQAVLAG-LPRLELEICLTRASGQDQHLWLVMR-LPESRSDFDAVILSI 220 Query: 517 NDITEQKK 524 DIT +K+ Sbjct: 221 GDITSRKQ 228 >gi|330722368|gb|EGH00221.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with GAF sensor [gamma proteobacterium IMCC2047] Length = 715 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 142/578 (24%), Positives = 269/578 (46%), Gaps = 20/578 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + V S DIV+ D IA +LG + G + Sbjct: 128 QNQVINDRLARSEKLHRYLVNSSPDIVYMIDNKGCFTFVNDRIAELLGYDKEELIG--MH 185 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF--HWMIIRIRPM------- 502 + + I D + + E R ++ D + I+ P+ Sbjct: 186 YRDLVFIADAEQASYVFSPRAAADTSPRNVELRFKSRDGDRPPRFFEIKTIPIELQADDE 245 Query: 503 --SNSNGDI-LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + S+G + G+A DI+++K++ I A+ D LT +PNR F DRL + + Sbjct: 246 AETESDGATEVGIYGVARDISDRKEAERTINFQAYHDLLTRLPNRALFKDRLNLAVAQAK 305 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + + VM +D+D++K +ND LG GD++L +++ + + L+ D LAR G+ F + Sbjct: 306 RAGH-QMAVMFLDLDRFKLVNDTLGHIYGDELLQLVSQSLQDCLRDGDTLARFGGDEFTL 364 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 ++ ++ A + + + P + +EI VT S+G A + + ++KNA++ Sbjct: 365 LMPEVDSKDDATVVAKKIIERLRQPFTIEGQEIYVTISVGIAMYPQDGSSMDSLVKNADI 424 Query: 680 AMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMYH K RG N + + R+ ++ D+ A+E+ + L + P I ++ IV Sbjct: 425 AMYHIKGRGKNDYQFYCREMNEATMQRLSLERDMRKALESEQFVLHFQPQIDVISGRIVA 484 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W HP G IS ++F+ +AEE +I + ++L + + +WR+Q + + Sbjct: 485 FEALVRWQHPSLGMISPTDFISVAEETGLILPLGEWVLRKACSVLSNWREQGIH-DVRMA 543 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN++S + + ++ + S +++ +E+++M + E S L +L ++G+ Sbjct: 544 INLSSMQIEHKNFIGLVHEVLRENHLSGHDLEMEITENLIMQDMENSIKKLMQLNELGVQ 603 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT S LSYL +P T+K + S + I+ ++I MA + +IA Sbjct: 604 IAIDDFGTGYSSLSYLQKLPIHTLKIDRSFVNEIEKDGDDACIVDAVIAMASGLRLNLIA 663 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + E ++ L GC +Q + P + LL Sbjct: 664 EGVEDEYQVEYLRDKGCCEMQGFYFGKPAPEKESVALL 701 >gi|331269821|ref|YP_004396313.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium botulinum BKT015925] gi|329126371|gb|AEB76316.1| Diguanylate cyclase/phosphodiesterase domain 2 [Clostridium botulinum BKT015925] Length = 963 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 148/567 (26%), Positives = 279/567 (49%), Gaps = 8/567 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLP 454 + + E+ LA+ G+ D +W+WD+ +D + I G + Sbjct: 396 QEKLRKSREKYKLAIEGANDAIWEWDVKKDTFFVSEKWTNITGYKLKDSCYIKNRNFFKQ 455 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + D + + + + L + ++ + N W+ ++ + + + G+ ++ G Sbjct: 456 IVVKQDYHILMKKIKNILRGKSIYLDVDCEIKDSLNHKKWITVKGKALKDKKGNTIKIAG 515 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 DITE+KKS + I A+ D LTG+PNR +FL ++ + + ++ IDID Sbjct: 516 SITDITERKKSNKKIEFLAYNDILTGLPNRIAFLKTAYKKIEEVKLHNKI-GAMIFIDID 574 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K +ND LG G+++L +++RI ++L +I RLSG+ F I+ N I A Sbjct: 575 NFKNVNDTLGHDYGNELLKEVSKRISDVLSDNEIFYRLSGDEFLILQCGCNEVNYINKIA 634 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + N+ I +AS+G + + ++ S +LKNA++AMY AK G N Sbjct: 635 DMVLGTFNKSFNIGNEYIYTSASMGISLFPKDNVSQSILLKNADIAMYKAKELGKNKYLF 694 Query: 695 FRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + +S ++E L A++ +EL LVY P + ++ I G E L++W PK+G + Sbjct: 695 YDISMSEDIIRKTQLEEGLRYAIDRNELKLVYQPQVDAINGNIKGGEVLLRWISPKFGFV 754 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S SEF+ +AE+ +I +I ++L++ W + N + + +N++ L E + Sbjct: 755 SPSEFIPVAEKSGLINSIGKWVLKKACLKNKQWLQKYNN-KVTVSVNVSVIQLQQEEFLQ 813 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ ++++T ++L +ESV+M + L ++K+G+ + LDDFGT S LSY Sbjct: 814 DLKNILNETKLPSETLELEITESVMMDCDKEILDKLNDIKKLGVKIALDDFGTGYSSLSY 873 Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P + VK + + + + I+ +II +A I +IA+ + + ++ L Sbjct: 874 LRMLPINKVKLDKAFIDRIHMNKSDRFIVENIIHLAHGIGFNVIAEGVELKEQLQILNEG 933 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957 CD IQ + + P+ KLLK ++ Sbjct: 934 KCDEIQGYYFSKPVTEEEFDKLLKNKY 960 >gi|297537744|ref|YP_003673513.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297257091|gb|ADI28936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylotenera sp. 301] Length = 985 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 146/605 (24%), Positives = 282/605 (46%), Gaps = 17/605 (2%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 I +R + I G ++ + IQ A Q +A + Sbjct: 394 GNIIIERCHDLIKTTPQELGSLMAIGRSLGVAIQRENAGKRLHQA--------KIAFDSA 445 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 + + D V I G + + G L + +DR F + + + Sbjct: 446 SEGIMITDDKVRIVAINKGFTEITGYSEEEVLGKSPKILQSGNQDDR--FYKDMWAILK- 502 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + R E + + ++ + I + ++ G ++ Y+G+ DIT+ K+S + Sbjct: 503 KEERWHGEVFNKRKSGENYYEWLTITAVKDNAGQVVNYVGVFADITDVKRSQNRLHELVN 562 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LTG+PNR+ + L + + D++ + ++ ID+D++K +ND LG VGD +L+ Sbjct: 563 HDPLTGLPNRRLLNELLEHSIKRAERDNH-KIALLFIDLDRFKAVNDTLGHQVGDKLLLE 621 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 +RRI ++ D++ARL G+ F +++ + + A + ++ + N+ EI + Sbjct: 622 ASRRISLSMRDSDVVARLGGDEFVVMMDMISKPSDASLVAKKIIHALQIEFNIDGHEIYI 681 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLC 712 +AS+G +++ ++K A++AMY K++G N+ + +R ++ L Sbjct: 682 SASVGISTFPKDCADVEGLIKAADIAMYQVKNKGKNNHCFYSDDLSKSAVERFTLEGQLR 741 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+ + + Y P + L+ EI+G EALI+W+HPK G +S + F+ +AEE +I I Sbjct: 742 HALVRKQFEVYYQPQVSLITGEIIGAEALIRWNHPKLGLVSPATFIPMAEETGLIVQIGE 801 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L A I+ W + +I +N++ ++ + + + ++ +T +P ++L Sbjct: 802 WVLREAAHQIVRWHKAGHAIQ-WIAVNVSGVQIMRSNFADTVYGILMETDCNPHMLELEI 860 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890 +ES VM N E R++++G+ L +DDFGT S LS L +P D +K + S + Sbjct: 861 TESTVMQNTEYVIDTFNRIKQLGLKLAIDDFGTGYSSLSNLKRLPLDKIKIDQSFVRDLP 920 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 AI +I MA ++ ++IA+ + + L+ MGC Q + P+ Sbjct: 921 DDLDDAAIANAIYAMAGSLGFSVIAEGVETQAQADFLSAMGCKEGQGYLYSKPVTATEFS 980 Query: 951 KLLKE 955 KLL + Sbjct: 981 KLLTK 985 Score = 42.2 bits (98), Expect = 0.38, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 6/157 (3%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + V + + + S D++ D + + L Sbjct: 107 MHDVTDRVSTELQLRHTEKLLRNLIDASPDLICFKDEKNRWLEANASSIELFQLDQLDYQ 166 Query: 447 GPIRNWLPYIH-INDRDNFRTIL---DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 L + ++ FR D R E + + + P+ Sbjct: 167 HKTDMELATLSSPAFKEAFRHSKVSDDQAWKLGRSIRNEEV-ISLPHGGAKVLDVIKVPL 225 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538 N +G + + DITE+K + + A D L Sbjct: 226 FNDDGSRHGLVTLGRDITERKMAESHLRDRSAILDAL 262 >gi|298504666|gb|ADI83389.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 739 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 151/631 (23%), Positives = 289/631 (45%), Gaps = 17/631 (2%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV--------GGLVLIVILIGFTVIQHV 390 L + + + G +++ P V L ++ I Sbjct: 100 LFPLDHLAMAMGVEGYAGIALTDAAGNVLGPLAVLSRRPLGDSELAETMLRIFAARASAE 159 Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 L Q + + ++ D R + + + +G + G Sbjct: 160 LERTKAEQARREQLHFLQVLIDSIPHPIFYKDADRRYIGCNAALESFIGRTREEIIGKT- 218 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + I R +D + G Y+ + D +I N++G I Sbjct: 219 --VFDIGAEGRARICDAVDRKLLANGGVESYDSTMIHTDGSIRDIIFSKTVFGNTDGSIG 276 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 +G DITE+K++ E I A+ D LTG+PNR DR++ +L + + V+ Sbjct: 277 GIVGTILDITERKRAEEAIQQLAYFDALTGLPNRTLLRDRVSQLLSQARREGGG-FGVLH 335 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D++K +ND LG A GD +L ++ RI ++ D +ARL + F +IL + + Sbjct: 336 LDVDRFKGVNDSLGHACGDVLLSTVAGRIASSIRESDTVARLGSDEFVVILPGVGHEEDV 395 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + + + PI + +I TASIG A + + ++ +LKNA++AM+ AK GG+ Sbjct: 396 VAVVRKIVEELNRPIVIQGNDIFCTASIGIAIYPTDGSSADILLKNADMAMHKAKEFGGD 455 Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + +R+ ++ L A+E E L Y P++ + IVG+EAL++WD P+ Sbjct: 456 GYQFYSSELNHRAMERLTLETSLRRALERREFLLHYQPLLGIGSGRIVGVEALLRWDSPE 515 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S + F+ +AEE +I I ++L + + + + + +N++++ + Sbjct: 516 LGMVSPARFIPLAEETGLIVPIGEWVLRSACEQLRALHE-LGYTELCVSVNVSARQFRHD 574 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 C + A+++ P ++L +ESV+M E ++ +L +L+++G+SL +DDFGT S Sbjct: 575 GFCAMVAAVLAAVGLDPRYLELELTESVIMERSETAKGILRKLKQMGVSLAIDDFGTGYS 634 Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL + P D +K + + + + AI +I+ +A + ++A+ + + Sbjct: 635 SLSYLKHFPIDRLKIDRTFVKEVTVDQDNAAIAEAIVALAHVLNLDVVAEGVETAEQLAF 694 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L + CD +Q H+A PL ++L+ L+ R Sbjct: 695 LAALRCDVVQGYHIARPLPPRNLLEFLEARQ 725 >gi|170723673|ref|YP_001751361.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] gi|169761676|gb|ACA74992.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida W619] Length = 1276 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 150/565 (26%), Positives = 270/565 (47%), Gaps = 17/565 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G + + + + L Sbjct: 708 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYSVSDVLDQLPSMLTV- 766 Query: 457 HINDRD--NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +D+ + R +L + RG + E ++ + + + I + + GD+ Y+ Sbjct: 767 --DDQQEGHLRYVLKQL--HLRGSWEGEVWLKRRSGEHYPAWVGITAVLDDEGDLASYVC 822 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 DI+E+K S + I A+ D LT +PNR F DRL T L + + +M +D+D Sbjct: 823 FFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERQKSW-VVLMFLDLD 881 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KI 630 ++K IND LG A GD +L + R+ + D +AR+ G+ F ++L S + Sbjct: 882 RFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQSRATREMALNRA 941 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N Sbjct: 942 IHVAENILASLVRPFVLEGREFFVTASIGIALSPQDGGELSQLMKNADTAMYHAKERGKN 1001 Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP Sbjct: 1002 NFQFYQAEMNASALERLELESDLRHALEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPT 1061 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + +F+ + EEL ++ + ++L +R + +W P + +NI+++ D Sbjct: 1062 RGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDG 1120 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + + ++ +T P+ ++L +ES++M + + +L L+ +G+S+ +DDFGT S Sbjct: 1121 QLGKRIATVLEETGLPPACLELELTESILMRDVNEAMQILDSLKVLGLSIAVDDFGTGYS 1180 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL P D +K + + + G E+ I R+II MA ++ +IA+ + ++ Sbjct: 1181 SLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEF 1240 Query: 927 LTRMGCDYIQDSHVASPLGFNSILK 951 L GCD +Q P+ + Sbjct: 1241 LREHGCDEVQGYLFGRPMPASQFEA 1265 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ R+ + + LG Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVLSQRMIFSNRHLGETLGYDR 485 Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500 + + + H D +++ + G L + R R D + IR + Sbjct: 486 TELAQMGERFWELLLHPEDAAHYQALRQQQRANGHGQSLHCQLRFRHRDGGWRCYDIREQ 545 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + +S+G + R IG+ D+T Q + S + A Sbjct: 546 VLTRDSDGQVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 23/158 (14%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL------------- 440 SQ + +R + D+++ D +P + +LG Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDSKLQLNYVSPSVQAVLGYNTDWIFENGWQSI 628 Query: 441 --ASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + G + + + DR+ L + + AD + + Sbjct: 629 VANPSQLTGIY-SLMERVSKAMGDREQL-AQLRQHLPNQLFLFDC----LRADGRKIPIE 682 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +R+ + + +G+ DI++Q+++ + + A Sbjct: 683 LRLVLVWDDRERFEGVLGVGRDISQQRRAEKDLRMAAT 720 >gi|26987408|ref|NP_742833.1| sensory box protein [Pseudomonas putida KT2440] gi|24982066|gb|AAN66297.1|AE016258_3 sensory box protein [Pseudomonas putida KT2440] Length = 1276 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G A + + L + Sbjct: 708 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLT-V 766 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R ++ ++RG + E ++ D + + I + + GD+ Y+ Sbjct: 767 DEQQEGHLRYVVKQL--HQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFF 824 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+E+K S + I A+ D LT +PNR F DRL L + +M +D+D++ Sbjct: 825 TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRF 883 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 884 KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIH 943 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 944 VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP G Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + ++L +R + +W P + +NI+++ D +L Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDGQL 1122 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ ++ P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1123 GTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSL 1182 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + ++ L Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ + Sbjct: 1243 EHGCDEVQGYLFGRPMPAHQFEA 1265 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 54/154 (35%), Gaps = 15/154 (9%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 SQ + +R + D+++ D +P + ++LG + + W Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQSVLGYQADWIFAN--GWQ 626 Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQ------------YEFRVRAADNQFHWMIIRIR 500 + + ++++ Q + F AD + + +R+ Sbjct: 627 SIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRKIPIELRLV 686 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + + +G+ DI++Q+++ + + A Sbjct: 687 LVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 720 Score = 66.1 bits (160), Expect = 3e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D+ R+ + + LG Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDR 485 Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500 + + + H D +++ + L + R R D + IR + Sbjct: 486 TELAQMGDRFWELLLHPEDAAHYQALRRQQRDNCHDQPLHCQLRFRHRDGSWRCYDIREQ 545 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + N+ G + R IG+ D+T Q + S + A Sbjct: 546 VLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586 >gi|148545949|ref|YP_001266051.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148510007|gb|ABQ76867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida F1] Length = 1276 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G A + + L + Sbjct: 708 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLT-V 766 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R ++ ++RG + E ++ D + + I + + GD+ Y+ Sbjct: 767 DEQQEGHLRYVVKQL--HQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFF 824 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+E+K S + I A+ D LT +PNR F DRL L + +M +D+D++ Sbjct: 825 TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRF 883 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 884 KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIH 943 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 944 VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP G Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + ++L +R + +W P + +NI+++ D +L Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDGQL 1122 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ ++ P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1123 GTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSL 1182 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + ++ L Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ + Sbjct: 1243 EHGCDEVQGYLFGRPMPAHQFEA 1265 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 54/154 (35%), Gaps = 15/154 (9%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 SQ + +R + D+++ D +P + ++LG + + W Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQSVLGYQADWIFAN--GWQ 626 Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQ------------YEFRVRAADNQFHWMIIRIR 500 + + ++++ Q + F AD + + +R+ Sbjct: 627 SIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRKIPIELRLV 686 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + + +G+ DI++Q+++ + + A Sbjct: 687 LVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 720 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D+ R+ + + LG Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDR 485 Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500 + + + H D +++ + L + R R D + IR + Sbjct: 486 TELAQMGDRFWELLLHPEDAAHYQALRQQQRDSGHDQPLHCQLRFRHRDGSWRCYDIREQ 545 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + N+ G + R IG+ D+T Q + S + A Sbjct: 546 VLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586 >gi|167588509|ref|ZP_02380897.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Burkholderia ubonensis Bu] Length = 859 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 146/550 (26%), Positives = 258/550 (46%), Gaps = 8/550 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A + W + R +P++ ILGL L + +++ Sbjct: 145 AQALAHVGNWAYQAGRPDGYWSPELYRILGLEPERTPATFDRLLQAVPADEQPLLFQSF- 203 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + E R+ AD ++ + + N I+ GI DITE+K I Sbjct: 204 TSLRTEGAAFSLEHRLIHADGTERHVLHQAESGRDLNHAII-LRGIVQDITERKAQQGRI 262 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+PNR DR+ + + L VMV+D+D++K +ND G +VGD Sbjct: 263 EYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQL-VAVMVLDLDRFKHVNDTFGHSVGD 321 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L ++ R+ ++ D +ARL G+ F ++L++ + + + P Sbjct: 322 GLLRAVAARLKAAVRDGDTVARLGGDEFVVMLVNLSTPADADAIGRKILGTFVAPFAFDG 381 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMI 707 ++ VT S+G + + +L+ A+ A+Y AK RG N + + +R + Sbjct: 382 HDLHVTTSVGVSLCPIDGADAETLLRTADAALYCAKERGRNCYSFYTRELGARVEERAEL 441 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L AVEN EL L Y P + L +I G+EALI+W P G I F+ IAEE +I Sbjct: 442 ENALHQAVENGELELYYQPKVDLKTGQISGVEALIRWRRPGVGVIPPDRFIPIAEETGLI 501 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I ++L ++W+ PI + +N++++ ++ ++A + +T +P+ Sbjct: 502 VPIGEWVLRTACAQAVAWQQA-GHAPIPVAVNLSARQFRQQDVARMVRATLDETGLAPAW 560 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +ESV+M + L L+ +G+ L+LDDFGT S LSYL +P D VK + S Sbjct: 561 LELELTESVLMQDRRAIAHALRELKALGVVLSLDDFGTGYSSLSYLKDLPIDVVKIDKSF 620 Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 ++ ++ + ++ RSII MA+++ +A+ + E + L R C +Q + + P+ Sbjct: 621 LSDVTTSAEGASLTRSIIAMAESLNMETVAEGVETEAQLSFLNRHRCHAMQGYYFSHPVT 680 Query: 946 FNSILKLLKE 955 I +L Sbjct: 681 GAEIAGMLSA 690 >gi|313497034|gb|ADR58400.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida BIRD-1] Length = 1276 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G A + + L + Sbjct: 708 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLT-V 766 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R ++ ++RG + E ++ D + + I + + GD+ Y+ Sbjct: 767 DEQQEGHLRYVVKQL--HQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFF 824 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+E+K S + I A+ D LT +PNR F DRL L + +M +D+D++ Sbjct: 825 TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRF 883 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 884 KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIH 943 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 944 VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP G Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + ++L +R + +W P + +NI+++ D +L Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDGQL 1122 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ ++ P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1123 GTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSL 1182 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + ++ L Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ + Sbjct: 1243 EHGCDEVQGYLFGRPMPAHQFEA 1265 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 54/154 (35%), Gaps = 15/154 (9%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 SQ + +R + D+++ D +P + ++LG + + W Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQSVLGYQADWIFAN--GWQ 626 Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQ------------YEFRVRAADNQFHWMIIRIR 500 + + ++++ Q + F AD + + +R+ Sbjct: 627 SIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRKIPIELRLV 686 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + + +G+ DI++Q+++ + + A Sbjct: 687 LVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 720 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D+ R+ + + LG Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDR 485 Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500 + + + H D +++ + L + R R D + IR + Sbjct: 486 TELAQMGDRFWELLLHPEDAAHYQALRQQQRDSGHDQPLHCQLRFRHRDGSWRCYDIREQ 545 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + N+ G + R IG+ D+T Q + S + A Sbjct: 546 VLSRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586 >gi|94499837|ref|ZP_01306373.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Oceanobacter sp. RED65] gi|94428038|gb|EAT13012.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Oceanobacter sp. RED65] Length = 800 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 140/562 (24%), Positives = 260/562 (46%), Gaps = 10/562 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + S E+ S ++ ++ D + I G+ + + +WL +I Sbjct: 236 LTSSEEKFRQLASLSPVGIFQINLKHDITYVNNRWSDITGIR--QPNATLEHWLSHIRQE 293 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 DR + + + E +Q W II + + G+I Y+G +DI Sbjct: 294 DRRAAVRAWRNLIENHQE-FVVEVGFERNRDQITWAIIEASVLYDGQGEIYGYMGAISDI 352 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T+ K + + AF D LTG+ NR+ F DRL + S + ++ +D+D++K+I Sbjct: 353 TDLKVAQLQMENLAFFDPLTGLSNRRLFKDRLHKSISESKRRGSF-VALLFLDLDQFKRI 411 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG GD +L RR+ ++ D ++R+ G+ F ++L N+ + A + K Sbjct: 412 NDSLGHDAGDVLLEETARRLENSVRESDTVSRIGGDEFTVLLNDVENTHGVRHIAEKILK 471 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697 + PI + +EI T SIG + + +++NA++AMY AK G N+ + F + Sbjct: 472 KVCRPIMVKNQEIINTVSIGITLAPTDGDDVNTLMRNADMAMYQAKAMGRNNYQFFSEEM 531 Query: 698 SSFRSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + I++DL +++ E + Y P I L VG EALI+W I Sbjct: 532 NKEMMGYLEIEKDLRHSIDYPEDFIIYYQPKIELHSGRFVGAEALIRWKPEGKDMIPPDR 591 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQ 815 F+ IAEE +I I ++ + + + P + IN++++ D +L +Q Sbjct: 592 FIPIAEESGLIVPIGAHVIRQACLQVKYMINTGIWPEDGKVAINLSARQFSDPDLICKLQ 651 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T ++ +ES +M N E + + +++++GIS+ +DDFGT S L+YL Sbjct: 652 EILEQTKCPVHVLEFEITESTLMDNVENAIFTMRQIKEMGISIAIDDFGTGYSSLAYLKR 711 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + S + + I ++I MA + ++A+ I + I L C+ Sbjct: 712 FPIDVLKVDRSFVMDIPNDLNDMEITAAVIAMAHKLHLQVVAEGIETQEQIDFLKSNYCE 771 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 Y Q +A P+ + + + ++ Sbjct: 772 YGQGFMIARPMPSDELERFIQR 793 >gi|187922673|ref|YP_001894315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phytofirmans PsJN] gi|187713867|gb|ACD15091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phytofirmans PsJN] Length = 1036 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 148/556 (26%), Positives = 270/556 (48%), Gaps = 14/556 (2%) Query: 407 QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 QS A+ S + + + + P I G + + G L +DR+ Sbjct: 477 QSRALDASVNAILITAPSPTGNLIEYVNPAFMRITGYDATEVIGHDCRVLQR---DDREQ 533 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + R + R D W + I P+ N +G I +IG+ ND+T+ Sbjct: 534 EGVALIRQALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNQDGVITHHIGVINDVTDL 592 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + E + A D+LT +PNR DRL L ++ V+ +D+D +K +ND Sbjct: 593 MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKG-VAVVFMDLDGFKNVNDS 651 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +VGD +L + R+ + D +AR G+ F I++ + + + +R SI+ Sbjct: 652 LGHSVGDRLLGVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRASIS 711 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P+ L E+ V S+G + + + ++K A+LAMY AK G N + ++ S Sbjct: 712 EPVWLDGTELYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771 Query: 703 D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ ++ L A+ ++E L Y P + + +IVG EAL++W P+ G + S F+ + Sbjct: 772 AGARLNLERRLRRALRDNEFLLHYQPQVDIESGQIVGTEALVRWRDPEVGLVPPSSFIPV 831 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I ++ ++L R +W+D+ PP + +N++++ ++ + + ++++ Sbjct: 832 AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARVFQQRDIAKLVMQVLAE 890 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P ++L +ES +M N E + +L L +GI L +DDFGT S LSYL P D Sbjct: 891 TGLEPQYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 950 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S ++ + I +II +A +++ +IA+ + + L CD +Q Sbjct: 951 LKIDRSFVSDIGVSGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010 Query: 939 HVASPLGFNSILKLLK 954 + A PL ++I +LL+ Sbjct: 1011 YFAKPLSTDAISELLQ 1026 Score = 47.6 bits (112), Expect = 0.010, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 54/167 (32%), Gaps = 16/167 (9%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 L + F + V + + ++ D+ + Sbjct: 322 LNFMGRAAFFVLADDVTDQINAEAEAQRSNQMLEAVIDNIPQRIFWKDMESRYLGCNMAF 381 Query: 435 ATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 A GLA + G P R++ ++ +D++ ++ +E + Sbjct: 382 ARDAGLAYPEQVVGKSDADMPWRDFSTLLNDHDKEVV--------STGVPKMNFEVDLV- 432 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 D + P ++ +G ++ +G DITE+K++ + + Sbjct: 433 IDGVHRTTVTSKLPFTDGDGRVIGVLGSYTDITERKRADLALRLQSR 479 >gi|330895491|gb|EGH27803.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 1002 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 262/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 434 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 492 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R IL +G + E R+R + + + + I + + GD+ Y+ Sbjct: 493 ESEQETRLRHILRQL--NGQGTWEGEIRLRRRNGEHYPAWVGITAVLDDEGDLASYVCFF 550 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E++ S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 551 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 609 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 610 KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIH 669 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 670 VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 729 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 730 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 789 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 790 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 848 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 849 GKRIALILEQTGLSPACLELELTESILMREVNEAMQILDSLKNLGLSIAVDDFGTGYSSL 908 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 909 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 968 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ Sbjct: 969 EHDCDEVQGYLFGRPMPPAQFEA 991 Score = 75.4 bits (184), Expect = 5e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 285 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 344 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEFRVR-------AADN 490 + W I + F ++D RL+ E +R AD Sbjct: 345 WILQN--GWSAAIANPQQIVGFDALMDRIDKVLDKPQELARLREEVTIRMFLFDCLRADG 402 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + +G+ G+ DI++Q+++ + + A Sbjct: 403 RKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 446 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 152 ILSIGDITSRKQVELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 211 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 +H + +H D N++ + L LQ R R ++ + IR + Sbjct: 212 SELHAMGEFFWEVLLHPEDARNYQDMRLRQRHHGHNELLQRVLRFRDRESNWRSFDIREQ 271 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DITEQ + S + A Sbjct: 272 ALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 312 >gi|303240874|ref|ZP_07327386.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acetivibrio cellulolyticus CD2] gi|302591602|gb|EFL61338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acetivibrio cellulolyticus CD2] Length = 852 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 270/568 (47%), Gaps = 10/568 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWL 453 + + E + + G+ + D + T + + L+ + L Sbjct: 287 RAYRELRKHHEWLEVTISSIGEAIIATDEKGVIMFTNLEAQKMFSLSEDEFMKKCLNEVL 346 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNGDILR 511 + + ++ + R +L E + + D H + I P+ N G+I+ Sbjct: 347 GGLMDENGAPCSFSVEEVI-NRGVKLNLESISVLASTDGNEHLVTGAILPIRNELGEIIG 405 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+S + I + D+LTG+PN+ F DRL L + L+ ++++ Sbjct: 406 TVSAIKDITEIKRSEKRIYDMEYYDSLTGLPNKALFSDRLNMALANARRS-GLKCAIIIL 464 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K IND LG A GD++L + +I ++ D +AR +G+ F I+ + I Sbjct: 465 DLDNFKTINDTLGHACGDEILKQMGEKIKGYIREVDTVARFAGDEFIILQPNVRLLTDIT 524 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + + P L RE VTASIG A + + +++NA++AMY AK G N Sbjct: 525 RAVERIIEKFQKPWILEGREYYVTASIGIAVYPNDGEDEQTLIRNADIAMYKAKETGKNS 584 Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 E F S ++ + ++ L A+E E L Y P I + I+G+EALI+W+ Sbjct: 585 YEMFMESMNKNIIDKLDMENSLRHALEKEEFVLFYQPQIDIKTGNIIGVEALIRWNREGI 644 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + EF+ + EE +I + ++L + W + P + I +N+++K Sbjct: 645 GLVPPMEFIPMIEESGLIIPLGEWVLRAACMQNVEWIRKGIKPVL-IAVNLSAKQFQQQN 703 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ ++++T P ++L +ES+ M + + + +L LR+ GI ++LDDFGT S Sbjct: 704 LVKIIENVLNETGLDPKLLELEITESIAMQDIDFTIAVLKELREKGIRISLDDFGTGYSS 763 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL +P DT+K + S + AI +S+I +A + +++A+ + + ++ L Sbjct: 764 LNYLKMLPIDTLKIDKSFVRDITSNSNEEAIAKSVISLAHKMHLSVVAEGVETKEQLEFL 823 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 CD +Q ++ PL N LL++ Sbjct: 824 KEHMCDKVQGFLLSKPLQANEAEILLRK 851 >gi|95928735|ref|ZP_01311481.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95135080|gb|EAT16733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 1288 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 141/586 (24%), Positives = 265/586 (45%), Gaps = 16/586 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + L Q ++ LA S + + D V+ + I G Sbjct: 709 VQDVAFALDVHEHEQQQAFSMKQLQLAATVFDNSREGIVLTDKNEKIVSVNRAFSDITGY 768 Query: 441 ASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G R H RD ++ + + G Q E R D Q + ++ + Sbjct: 769 RDDEVLGQTPRILKSNRH--GRDFYQNMWHCLAEH--GCWQGEIWNRRKDGQVYPELMSM 824 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + ++ YI + DI++ K+S E + ++ D LT +PNR F L + + Sbjct: 825 SAVCDDQQEVSHYIAVFTDISQAKESQEKLDYLSWHDPLTDLPNRSLFCTHLDQAVKHAE 884 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + V+ D+D +K +ND G VGD +L + R+ L+ D+LARL G+ F + Sbjct: 885 RKHH-SFAVLCFDLDHFKDVNDSFGHLVGDALLRKIADRLRSCLRESDMLARLGGDEFVL 943 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNA 677 +L +S ++ A + + PI L + E+ V+ S+G A + + E+L+ A Sbjct: 944 LLEDVADSHRVTMMAEEILHQLQQPICLTETDLEVQVSVSVGIAVYPEHGRDALELLQRA 1003 Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + A+Y AK G + +RV + L A+E E + Y P + L +I Sbjct: 1004 DSALYRAKQHGRARFAYYNEEMTEQAQERVQLSFHLRQALEKKEFAVYYQPQVDLGTGQI 1063 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EAL++W+ P+ G ++ F+ +AEE+ I ++ ++L ++ +W D PP+ Sbjct: 1064 VGAEALMRWNSPELGLVTPDRFIPLAEEIGCICSMGTWILRQVCEQGKAWLDA-GYPPLT 1122 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+++ + ++ ++ + +T Y ++L +ES +M +++ LL L ++G Sbjct: 1123 LAVNLSAVQFAEEDIACRLKETLQETGYPAEYLELEVTESTLMHKEQQTIDLLKSLNELG 1182 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 + L LDDFGT S L+YL Y P +K + S + ++ +I+ M + + Sbjct: 1183 VRLALDDFGTGYSSLAYLKYFPLHLLKVDKSFIDDLPADANDCKMVTAIVQMGHGLGFDL 1242 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 +A+ + L ++GCDY Q + + P+ L + + PL Sbjct: 1243 LAEGVETVAQRDCLAQLGCDYYQGYYCSPPVPACEFAALRQSQKPL 1288 Score = 42.6 bits (99), Expect = 0.31, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 10/149 (6%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT-PDIATILGLASGSM-HGPIRNWL 453 S+ D++W DI + T + T+L + S + G + Sbjct: 416 ASERHQETARLLQHICDNVPDLIWAKDIEHHYIFTNKSNCRTLLCVDSTDIAIGKNHEFF 475 Query: 454 P--YIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVR---AADNQFHWMIIRIRPMSNS 505 + D + L R + R + + + P + Sbjct: 476 SDKILKEFPEDPLAYQFSELCCQSDSEVLRTRQSMRFQEVGHVKGTLICLDVYKAPFYGA 535 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAF 534 +G+++ +G A IT +K+ + + + Sbjct: 536 DGELIGTVGSARIITREKQLEQETMRLSR 564 >gi|146295101|ref|YP_001178872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408677|gb|ABP65681.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 1015 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 148/569 (26%), Positives = 279/569 (49%), Gaps = 11/569 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 ++ + + ER V D +W++D+ R+ ++ + WL Sbjct: 445 TELLKEEEERYKFIVENISDCIWEFDVAEKRIEFYGNLKDYFETDKINPKIDYYAWLELY 504 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H +D + R +++YE R++ + + W+ + I+ ++ G + IGI Sbjct: 505 HPDDIKAVMEKIQRAFELRDEKIEYEARIKDKNGNYKWVSVHIKVFYDNRGKPEKLIGIN 564 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D + +K+ + I A+ D+LT +PNR+ F ++L+ ++ +A + V++IDID + Sbjct: 565 IDYSAKKEYEDRIKYLAYYDDLTNLPNRKLFENKLSELIKKAAQTGKI-GAVILIDIDNF 623 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633 K IND+ G VGD+ L +++++I E LK + +R+ G+ F IIL + + Sbjct: 624 KDINDLYGHEVGDECLRTISQKIAEYLKGLEVQNYFSRVGGDEFAIILNGLEKKDFVIEV 683 Query: 634 AIAMRKSIAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 ++K I L + E + T S+G + + + E+L+N ++A+ AK G N Sbjct: 684 CTEIQKIFENEIFLEKIERGLYTTISMGISFYPDDGRDTKEILRNVDMALSLAKENGKND 743 Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F +++ I+++L A+EN E L Y P++ L + EI +EALI+W P Sbjct: 744 FQIFMPFLLLKNLNKIEIEKNLRKAIENDEFVLYYQPVVNLENMEIHSVEALIRWFLPHK 803 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S EF+ +AEE +I I ++E+ +D+ W + I I IN++++ Sbjct: 804 GMVSPLEFIPVAEESGLIVRIGEMVIEKALKDLKDWERKGIN-DIHIAINLSARQFKTKY 862 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + L+ K P ++ +E+ + N + S +LG L ++GI +DDFGT S Sbjct: 863 FENTVAKLLEKYSVDPVKVSFEITETGAVENFDVSLKILGFLCQMGIKFLIDDFGTGYSS 922 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P VK + S ++ +++ AI+ II MA + ++A+ I ++ L Sbjct: 923 LIYLRKLPISGVKIDKSFISELMFSKESRAIVEGIILMAHKLGLKVVAEGIENNKQLEIL 982 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD+ Q + P+ + K L ++ Sbjct: 983 KEIGCDFGQGYLFSKPVPKEEVEKFLLQK 1011 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 2/145 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T+ QG + + L + IV ++ + + + G Sbjct: 276 SITIFVMRGINKKLQQGKEAYEKYAELLASNANVIVLTLNLKGEIIFFNRFAEEVTGYKK 335 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G W+ R L S + ++ YE + + W+I + Sbjct: 336 EEVVGK--RWVDLFVPEFRREDAEKLFSEIAEKKVLNNYESEIITKNGDTCWIIWNNVVV 393 Query: 503 SNSNGDILRYIGIANDITEQKKSLE 527 NS + I DIT KK+ Sbjct: 394 ENSYLNEPLIISTGLDITPIKKNQR 418 >gi|217975096|ref|YP_002359847.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217500231|gb|ACK48424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS223] Length = 1508 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 144/555 (25%), Positives = 274/555 (49%), Gaps = 18/555 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465 + + V + + P I G + +IH R+ F Sbjct: 958 VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 TI + ++ E +R Q + + I + + G+ ++ + DIT++KK+ Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L ++ RR+ ++ D +ARL G+ F IIL + + + ++ P Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L ++ +T++ SIG + + + + ++K A+ AMYHAK G N+ + + + + Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 V ++ L A++ +EL LVY P L + + G+EAL++W H + G IS EF+ +AEE Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKNGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++ + + + W I + +N++++ L ++ ++ ++ + Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + AI +II +A +++ ++A+ + + + L GCD +Q ++ Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487 Query: 942 SPLGFNSILKLLKER 956 PL L LLK + Sbjct: 1488 KPLSGADFLTLLKNQ 1502 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 7/135 (5%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 F I + ER LA+ SGD +WDW+I ++V T ++I S ++ Sbjct: 818 RQQQREFETSIRASEERLKLALWASGDGMWDWNIAENQVYRTNMDSSIPHWNSSNIAH-- 875 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGD 508 +H DR+ F+ L+ + R + E+RV + + W++ R + + +S + Sbjct: 876 ----ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDN 931 Query: 509 ILRYIGIANDITEQK 523 +R G +IT +K Sbjct: 932 PIRMTGTNRNITSRK 946 >gi|253997490|ref|YP_003049554.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253984169|gb|ACT49027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 1250 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 148/595 (24%), Positives = 261/595 (43%), Gaps = 21/595 (3%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI----FSDGERQSLAVLGSGDIVWDWDIVRDRV 428 G ++ T ++ S+ + + + Q A+ IV D+ Sbjct: 663 GTAAILGWFYDVTDLRRAQDALLLSEALAKQSLEELKYQKYALDK-HAIVAVTDVKGRIT 721 Query: 429 TTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + I G + + G L H + F+ + + + E RA Sbjct: 722 YANDKFSEISGYSIEELLGQDHAILNSGYHP--KGYFKEMYRTVANGQ--VWHDEICNRA 777 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D +W+ I P +G YI I DIT++K + + A D LT +PNR+ Sbjct: 778 KDGSLYWVDTTIAPFIGDDGKPQSYISIRTDITQRKAAEDKSNYLALYDPLTNLPNRRLL 837 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 LDRLT L + ++ +D+D +K +ND LG VGD +L + + ++ D Sbjct: 838 LDRLTHALASAMRTGRG-GALLFLDLDHFKTLNDTLGHDVGDLLLQQVAECLTACVREGD 896 Query: 608 ILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 +ARL G+ F +IL + + + P E +T+S+G Sbjct: 897 TVARLGGDEFVVILEGLSEQEVEAAAQAEVVGEKILNKFIEPYQFKGYEYHITSSVGITL 956 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSEL 720 + + + S E+LK A++AMY AK G N + F + ++ +L A++ +E Sbjct: 957 FGKNNLKSDELLKQADIAMYQAKKLGRNALSFFDPKMQEGIQARVDMEHELRKALDKNEF 1016 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y + L D + G EALI+W HP+ G I +EF+ IAE+ MI +I ++++ Sbjct: 1017 QLFYQMQVGLSDRAV-GAEALIRWIHPERGLIPPNEFVSIAEDCGMILSIGAWVIDTACA 1075 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + W + + +N+++K + E + I++ +P +KL +ES ++ + Sbjct: 1076 QLKRWEQSERTRSLTLSVNVSAKQFRQADFVEQVTTAIARHGINPMLLKLELTESALLDH 1135 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAI 898 E + ++ L+ IGI +LDDFGT S L YL +P +K + S + AI Sbjct: 1136 IEDAVAIMNALKDIGIRFSLDDFGTGYSSLQYLRLLPLYQLKIDRSFVRDIASSIGNQAI 1195 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +R+II MA + +IA+ + ++ L GC + Q + P+ ++ LL Sbjct: 1196 VRTIIAMAHTLNLNVIAEGVETQVQQGILLDSGCMHYQGYLFSEPVPIDAFEALL 1250 Score = 90.8 bits (224), Expect = 9e-16, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 75/236 (31%), Gaps = 4/236 (1%) Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 A + + ++ I++ + Y RA+ ++ + + Sbjct: 214 AKWVATIFRILFILVAFWSIFYLWRAY-RALHSTLGASADEVYQHIFRVGAGDFSIPITV 272 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 +PA ++ + + + H + + Q + A + W D + Sbjct: 273 KPAQDNSVLAELAKMQSLLHAHDVERTHAEQSLHRSKALLVEAQHIAQVGSWSLDWLTGE 332 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + + +I I H +L +H DR+ + V + R+ Sbjct: 333 LIWSEEIYHIFETDQHQFHANYEAFLNAVHPCDREAVDCAFKASV-VSHTPYEITHRLLL 391 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 AD W+ R ++ G+ G D+TE++ S I LT I N Sbjct: 392 ADGSVKWVHERGTSDYDAAGNPTYSRGTVQDVTERQNSEALIRKTESY--LTNILN 445 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 3/147 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASG 443 +Q V I + + +++W RV I + GL+ Sbjct: 418 GTVQDVTERQNSEALIRKTESYLTNILNSVEEVIWTASAPDFRVNHVNAAIEKLCGLSQQ 477 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ I W+ IH +D + + + + E+R+ AD W+ + Sbjct: 478 ALIDDIEVWINLIHPDDCAQAKLAMKAVFEQ--SSVALEYRIVLADGTVRWVSDSRHVVY 535 Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530 +G+ + + +D+T ++ + + Sbjct: 536 GESGESAELVCVIHDVTAKRLAADADR 562 >gi|189425827|ref|YP_001953004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189422086|gb|ACD96484.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 860 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 150/613 (24%), Positives = 263/613 (42%), Gaps = 14/613 (2%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 W + GG +L+ I + T + + ER+ L Sbjct: 249 WLGIEGAGYLMPRWIWWTLGGVAGGALLLGIFALLLRREVRRKTADLNHEV---EERRKL 305 Query: 410 --AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 AV S + V D P + G S + G + L H + + + Sbjct: 306 FAAVEQSANSVVITDTEGVIEYVNPHFCMVTGYRSEEVIGQKPSLLKSGH-QSAELYADL 364 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + R + EFR + + +W + I P+ N G+I ++ I DIT +K E Sbjct: 365 WKTISAGR--EWRGEFRNKRKNGSLYWDLCSIAPIRNEAGEITNFVAIKEDITSRKAQEE 422 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A D LTG+ NR + LT + ++++IDID K +ND G Sbjct: 423 ILTWQAGHDTLTGLYNRYFLENHLTAEIKRMDRQHQT-LSLLLIDIDNLKFVNDTFGHDF 481 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LV + R+ + I+ R GN F ++ +++ ++ + Sbjct: 482 GDRLLVQIAERLKQAACPLSIVGRFLGNEFALVPPLAEGREHAVTLVNRIKQQMSELFVM 541 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRV 705 E+ +T SIG + + +L+NAE AMY AK +G N + + R+ Sbjct: 542 DGAEVVITVSIGVVVFPDDGEDADTLLRNAEAAMYEAKRQGRNTIVWYTTDFHKRAQYRL 601 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 M+ L A ENS+ L Y P I D ++G+EAL++W +S EF+ I EE Sbjct: 602 MLAARLHRAFENSDFTLQYQPQISTQDNTVIGVEALLRWTPADLPPVSPMEFIPILEETG 661 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I + ++L + +W+ P + + +NI++ +L E ++ ++++T P Sbjct: 662 LIVPVGTWVLYQACHQAAAWQRAGL-PRMRLSVNISAVQFQRGDLGETVRMVLAETGLDP 720 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 + + L +ES++M + +S+ L LR +G+ L LDDFGT S L+YL +P +K + Sbjct: 721 ALLCLELTESMLMIDTAQSQQKLQELRDLGVRLALDDFGTGYSSLAYLSRLPVQELKVDQ 780 Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + A++ ++I MA+ + T+IA+ + E L GC IQ P Sbjct: 781 SFVRRLHDTPSDTAVVNTVIAMAQELGLTLIAEGVESEEQKSHLIGRGCTIIQGFLFCRP 840 Query: 944 LGFNSILKLLKER 956 L + + + + Sbjct: 841 LPPDQLALFVGQE 853 >gi|330981875|gb|EGH79978.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1178 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 145/563 (25%), Positives = 262/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 610 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 668 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 669 ESEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 726 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E++ S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 727 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 785 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 786 KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIH 845 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE +TASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 846 VAERILTSLITPFVLEGREFFLTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 905 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 906 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 965 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 966 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1024 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1025 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1084 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1085 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1144 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ Sbjct: 1145 EHDCDEVQGYLFGRPMPPAQFEA 1167 Score = 75.4 bits (184), Expect = 5e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 461 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 520 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEFRVR-------AADN 490 + W I + F ++D RL+ E +R AD Sbjct: 521 WILQN--GWSAAIANPQQIVGFDALMDRIDKVLDKPQELARLREEVTIRMFLFDCLRADG 578 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + +G+ G+ DI++Q+++ + + A Sbjct: 579 RKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 622 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 10/121 (8%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 + + + + LG + +H + +H D N++ + L LQ Sbjct: 368 LSQRVIYSNHHFGYTLGYSKSELHAMGEFFWEVLLHPEDARNYQDMRLRQRHHGHNELLQ 427 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532 R R ++ + IR + + ++ + R IGIA DITEQ + S + Sbjct: 428 RVLRFRDRESNWRSFDIREQALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRML 487 Query: 533 A 533 A Sbjct: 488 A 488 Score = 39.2 bits (90), Expect = 4.0, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 34/188 (18%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425 A + G LI +L+ + +++ + + R G+G + D+ Sbjct: 154 LAPLIGKCLIGLLLSILPLIALISLRRRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 213 Query: 426 ----DRVTTTPDIATILGLASGSMHGPIRNW---------LPYIHINDRDNFRTIL---- 468 V T D +L S+ ++ L + I R+ L Sbjct: 214 QLEALEVRTGEDFERLLKSQPASLKRLLQQLRISELNEVALSLLDIEHREQAWQPLIEGE 273 Query: 469 ------------DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + + + RL+ E + A + + + +R + + D I Sbjct: 274 SRSRPGVGIPIIQAVLAGQ-PRLELEICLTRASGEDQHLWLVMR-LPETRSDFDAVILSI 331 Query: 517 NDITEQKK 524 +DIT +K+ Sbjct: 332 DDITSRKQ 339 >gi|323699469|ref|ZP_08111381.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio sp. ND132] gi|323459401|gb|EGB15266.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio desulfuricans ND132] Length = 857 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 143/588 (24%), Positives = 272/588 (46%), Gaps = 13/588 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 ++ + + + ++ + + ++ T P +A I Sbjct: 271 ELMRTNTQLKIEIAERKVIGDALRKAEKKYRTIFENAVEGIYQSSYSGRFQDTNPALARI 330 Query: 438 LGL-ASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 LG + + I + ++++ DR R + R + +VR D + W+ Sbjct: 331 LGYKSPEDLMSSIYDIGTQMYVDPDR---RKEFLRLIEERNEVKNFVSKVRKRDGRIIWV 387 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 R + + NG+I+ + G DIT +KK+ + + AF D LTG+PNR FLD L + Sbjct: 388 AENARKIVDENGNIVCFEGSIEDITMRKKAEDQLKRQAFHDPLTGLPNRALFLDHLRMAM 447 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + S ++ V+ +D+D++K +ND LG GD++L + R + + + D +AR G+ Sbjct: 448 ERSRRRKHM-FAVLYMDLDRFKVVNDSLGHDAGDELLRGVARVLEQCGRSVDTIARFGGD 506 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+ + A + + + P + E+ +AS+G T +L+ Sbjct: 507 EFAILQEEISAPKDAIAIARRILEGVRQPFTIGGNEVFTSASLGIVLKTDGYDRPEALLR 566 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A+ AMY AK G + + F + + ++ DL AV+ E +VY PI+ L Sbjct: 567 DADTAMYRAKELGKSRFKVFNRKMHDQALQLMELETDLRRAVDLREFEVVYQPIVELATR 626 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 + G EAL++W HP+ G I +F+ +AE+ +I AI+ +LE + W+ + Sbjct: 627 RVCGFEALVRWRHPEHGIIGPGDFISLAEDTGLIYAIDNLVLEEACAQVRRWQTLVGVTD 686 Query: 794 ---IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + + INI+ K + L + + + S + + +ES +M NP + +L + Sbjct: 687 GGELTVNINISGKHFGQSMLAGQISRALDDSGLSADALNIEITESALMDNPNVAEDILQQ 746 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKN 908 L+ +G+ + +DDFGT S LSYL P D VK + S + + + AI+R++ + ++ Sbjct: 747 LKDLGVHICIDDFGTGYSSLSYLQRFPIDVVKVDRSFIVAVDTDQDSQAIVRTVFSLGES 806 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + I+A+ + ++ L R GC ++Q P+ + LL+ + Sbjct: 807 MGLKIVAEGVETSGQLEFLEREGCRFVQGYFFYKPMSVADVDHLLEGQ 854 >gi|291569888|dbj|BAI92160.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 990 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 144/583 (24%), Positives = 298/583 (51%), Gaps = 11/583 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 +I T+I + + ER L D+V + P +LG Sbjct: 399 IIWDTLIMDISDRKQIEIALAESEERLRLVTENMSDLVCLHAPDSSYLYVNPSSEILLGY 458 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRI 499 + G + ++ ++ ++ + G + +++R + ++ W+ Sbjct: 459 TPEELIGKKPTDIF----QSQELYQVCMEYSLSILPGISRPIIYQIRKKNGEYIWLETLT 514 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + ++ G++ + D++++ K+ E + +A D+LTG+PNR + +L L + Sbjct: 515 KVILDNQGEVRHLQSASRDVSDRIKAEEQLKYDALHDSLTGLPNRTHLMAQLDMALKRAQ 574 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++NL+ ++ +D+D +K +ND LG +GD +L + + I ++ D+LA L G+ F I Sbjct: 575 NNENLQLAILFLDLDNFKVVNDSLGHLIGDKMLSLVAKIIKNFVRDTDLLAHLGGDEFVI 634 Query: 620 ILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 +L + A + +S+ P+ + ERE+ V +SIG + T+ + ++L++A+ Sbjct: 635 VLEYLEVIHEAIRVAERILESLRTSPLQIGEREVFVNSSIGIVARTNRHEKAEDLLRDAD 694 Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 LAMY AKH G F + ++ ++ DL A++N+EL L Y PI+ + ++I Sbjct: 695 LAMYRAKHEGRGRYAIFDPLMHFHAVQQMHLENDLRKAIKNNELVLYYQPIVNIKTQKIQ 754 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 GLEAL++W HP+ G +S F+ IAE +I I ++L + + + W++Q + + Sbjct: 755 GLEALVRWQHPERGLLSPGHFIEIAENTGLIIPIGKWLLHKACQQLEEWKNQFPSHCLKM 814 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ K L L E + +++ + + + + +ES+++ N +++ LL +++ GI Sbjct: 815 SVNLSVKQLE-GFLLEQLDEVLNSYNLNHNSLVMEITESMLVANVQKTCDLLSQIQAKGI 873 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S LSYL +P +++K + S ++ +++ I +SII ++K ++ +I Sbjct: 874 GLSIDDFGTGYSSLSYLHQLPVNSLKIDRSFVSPENLSDRHQVIAKSIIALSKLLKLHVI 933 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 A+ + L ++GC+ Q + P+ + I +LL ++F Sbjct: 934 AEGVETPEQFYWLKKLGCEAAQGYLFSRPVPASEITELLSQQF 976 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 15/159 (9%), Positives = 56/159 (35%), Gaps = 6/159 (3%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVR 425 V+++++ + + + + +R ++ + D Sbjct: 257 YTTIAGVVVLLVWNRLLGVEIKRRNQVEKALIQSEQRFQKMAANVPGAIFQYVLHPDGSD 316 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + + + + + ++ + +H +D ++ + +++R+ Sbjct: 317 QVLYMSEGCYELWEVRADTVVKDAKILWDMVHPDDLESMYESV-LISANNLAPWFWQWRI 375 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + W+ +P + NGDI+ + + DI+++K+ Sbjct: 376 TTPSGKLKWLQSAGQPERHDNGDII-WDTLIMDISDRKQ 413 >gi|91781813|ref|YP_557019.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400] gi|91685767|gb|ABE28967.1| Putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) with PAS/PAC sensor(s) [Burkholderia xenovorans LB400] Length = 1036 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 148/556 (26%), Positives = 269/556 (48%), Gaps = 14/556 (2%) Query: 407 QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 QS A+ S + + + + P I G + G L +DRD Sbjct: 477 QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDAAEAIGHDCRLLQR---DDRDQ 533 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + R + R D W + I P+ + +G I +IG+ ND+T+ Sbjct: 534 EGVALIRQALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPDQDGVITHHIGVINDVTDL 592 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + E + A D+LT +PNR DRL L ++ V+ ID+D +K +ND Sbjct: 593 MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKG-VAVVFIDLDGFKNVNDS 651 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +VGD +L + R+ + D +AR G+ F I++ + + + +R SI+ Sbjct: 652 LGHSVGDRLLSVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEKSLIAWMERVRVSIS 711 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P+ L E+ V S+G + + + ++K A+LAMY AK G N + ++ S Sbjct: 712 EPVWLDGTELYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771 Query: 703 --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ ++ L A+ +++ L Y P + ++ +IVG EAL++W P+ G + S F+ + Sbjct: 772 AGTRLNLERRLRRALRDNQFLLHYQPQVDIVSGQIVGTEALVRWRDPEVGLVPPSSFIPV 831 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I ++ ++L R +W+D+ PP + +N++++ ++ + + ++ + Sbjct: 832 AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARVFQQRDIAKLVMQVLDE 890 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P ++L +ES +M N E + +L L +GI L +DDFGT S LSYL P D Sbjct: 891 TGLEPQYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 950 Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S ++ + I +II +A +++ +IA+ + + L CD +Q Sbjct: 951 LKIDRSFVSDIGISGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010 Query: 939 HVASPLGFNSILKLLK 954 + A PL ++I +LL+ Sbjct: 1011 YFAKPLSTDAISELLQ 1026 Score = 50.3 bits (119), Expect = 0.002, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 57/180 (31%), Gaps = 20/180 (11%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + DI AL ++ V + + ++ Sbjct: 313 ISADISYHALNFMGRAAFFVLAD----DVTDQINAEAEAQRSNQMLEAVIDNIPQRIFWK 368 Query: 422 DIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGY 474 D+ + A GLA + G P R++ ++ +DR+ Sbjct: 369 DLESRYLGCNMAFARDAGLAYPEQVVGKSDADMPWRDFSSLLNDHDRE--------VAST 420 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++ +E + D + P ++ +G ++ +G DITE+K++ + + Sbjct: 421 GVPKMNFEVDLM-IDGVHRTTVTSKLPFTDGDGRVIGVLGSYTDITERKRADLALRLQSR 479 >gi|296161002|ref|ZP_06843813.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] gi|295888701|gb|EFG68508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] Length = 1036 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 149/556 (26%), Positives = 269/556 (48%), Gaps = 14/556 (2%) Query: 407 QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 QS A+ S + + + + P I G + G L +DRD Sbjct: 477 QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDAAEAIGHDCRLLQR---DDRDQ 533 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + R + R D W + I P+ N +G I +IG+ ND+T+ Sbjct: 534 EGVALIRQALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNQDGVITHHIGVINDVTDL 592 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + E + A D+LT +PNR DRL L ++ V+ ID+D +K +ND Sbjct: 593 MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKG-VAVVFIDLDGFKNVNDS 651 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +VGD +L + R+ + D +AR G+ F I++ + + + +R SI+ Sbjct: 652 LGHSVGDRLLSVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRVSIS 711 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P+ L E+ V S+G + + + ++K A+LAMY AK G N + ++ S Sbjct: 712 EPVWLDGTELYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771 Query: 703 --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ ++ L A+ +++ L Y P + ++ +IVG EAL++W P+ G + S F+ + Sbjct: 772 AGTRLNLERRLRRALRDNQFLLHYQPQVDIVSGQIVGTEALVRWRDPEVGLVPPSSFIPV 831 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I ++ ++L R +W+D+ PP + +N++++ ++ + + ++ + Sbjct: 832 AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARVFQQRDIAKLVMQVLDE 890 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P ++L +ES +M N E + +L L +GI L +DDFGT S LSYL P D Sbjct: 891 TGLEPQYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 950 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S ++ + I +II +A +++ +IA+ + + L CD +Q Sbjct: 951 LKIDRSFVSDIGVSGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010 Query: 939 HVASPLGFNSILKLLK 954 + A PL ++I +LL+ Sbjct: 1011 YFAKPLSTDAISELLQ 1026 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 20/180 (11%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + DI AL ++ V + + ++ Sbjct: 313 ISADISYHALNFMGRAAFFVLAD----DVTDQINAEAEAQRSNQMLEAVIDNIPQRIFWK 368 Query: 422 DIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGY 474 D+ + A GLA + G P R++ ++ +DR+ T + Sbjct: 369 DLESRYLGCNMAFARDAGLAYPEQVVGKSDADMPWRDFSSLLNDHDREVVSTGVPKM--- 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + + D + P ++ G ++ +G DITE+K++ + + Sbjct: 426 ---NFEVDLMI---DGVHRTTVTSKLPFTDGEGRVIGVLGSYTDITERKRADLALRLQSR 479 >gi|119945725|ref|YP_943405.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] gi|119864329|gb|ABM03806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 703 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 144/564 (25%), Positives = 266/564 (47%), Gaps = 21/564 (3%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R + SG+ +WDW+I + V A I G+ + + D+ Sbjct: 145 RLGHVLEVSGEGMWDWNIQTNEVFQNQKWADITGVKHS--KRSFSEFQDCLVEEDKKYVL 202 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524 T L + + ++ E+R R D + W+ R + + + G +GI DITE+K Sbjct: 203 TSLQALIE-KKIPYDIEYRFRRPDGKVIWIWDRGQVLEYDDQGKPKLLVGIMQDITEKKF 261 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + I AF D LT +PNR DRL ++ S + V+ +D+D +K +ND G Sbjct: 262 NQSEIELMAFYDTLTMLPNRALLNDRLNLAIEHSKRFEKY-GAVLFLDLDNFKILNDSYG 320 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRK 639 GDD+LV + +RI +++ D +AR G+ F I+L ++ K A ++ Sbjct: 321 HQAGDDLLVIVAQRIQSVIRKDDTVARFGGDEFVIVLNELDSEPVKAAIKAQRLAQSICH 380 Query: 640 SIAMPINL------LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 SI IN+ + + +TAS+G + SE+L+ A+LA+Y AK G + Sbjct: 381 SIKQKINIKISNMAADIDYFITASVGITIFYGQSKVPSELLQLADLALYQAKKNGRDDSA 440 Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + ++L +++ + L Y P +V EALI+W+HP+ G Sbjct: 441 MFDPVMQEKLDYSTCLDKELRQSLKQKDFVLYYQPQYDAKQN-LVSAEALIRWNHPELGL 499 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 ++ +F+ +AEE +I I ++L + + W+ + + +NI++K + + Sbjct: 500 VNPGDFIKVAEESNLILPIGDWVLSEACQQLKKWQSDPQYQHLSLSVNISAKQIWQKDFV 559 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 G++ ++S + + S++KL +ES+++ + + L L G++ +LDDFGT S L Sbjct: 560 AGIKRIVSDSDINVSKLKLEITESILLRDINGTAEKLNDLVAFGLTFSLDDFGTGYSSLG 619 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P D +K + S + + + +++SII + KN ++A+ + E + L Sbjct: 620 YLKNLPIDELKIDQSFIRDLFDNKMDLIMVKSIIDLGKNFGINVVAEGVETEAHFEILKE 679 Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953 GC Q + + P+ + + L+ Sbjct: 680 FGCKIYQGYYFSRPVPVSEFVTLI 703 >gi|254558955|ref|YP_003066050.1| sensory box-containing diguanylate cyclase/phosphodiesterase, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens DM4] gi|254266233|emb|CAX21991.1| putative sensory box-containing diguanylate cyclase/phosphodiesterase, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens DM4] Length = 737 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 164/734 (22%), Positives = 307/734 (41%), Gaps = 23/734 (3%) Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287 ++ I+ + + L IW + ++ + R A Sbjct: 1 MIAVIACAGALYAFQRHAHPTVLPIWFGAVLVVCGWRVVATVRRNARPPRRTASAS-AMR 59 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 + IA + P S T +I++ I++ G ++ Sbjct: 60 NLIAEATLTVACLMSVPSWLLSQTTGTTYAILVCLLTGILWAGCLTLATVRAAAMVYVGT 119 Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + + ++ +L L + T + L Q + + Sbjct: 120 GAAIVVIGLLWDNQDVEHLMLASLFPLGALTAMRSVDTQAKMFLDNQRQQQSLTKQSDLI 179 Query: 408 SLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD- 462 L + + D +W+ D + LG S ++ G + + + Sbjct: 180 GLLLKDYEEQTSDWLWETDASLRYANPSDRFVEALGRPSHAIRGVVLG--SLLEDEEIAG 237 Query: 463 --NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R + + R+ A + W I RP+ + L Y G+ +D+T Sbjct: 238 NATARLEVRACAEARQPFRDMVVPFTRA-GERRWWSISGRPVYDETRTFLGYRGVCSDVT 296 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 K + I A D LTG+PNR + L L + V+ +D+D +K +N Sbjct: 297 TAKAAELRIAHLAHHDALTGLPNRTFLSESLHQSLRDPDR---VCLAVLSLDLDGFKAVN 353 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G GD +LV + R+ + DI+AR G+ F ++ ++ + ++ D A + +S Sbjct: 354 DRYGHPGGDALLVCVAERLQTKVSGGDIVARFGGDEFVVLNVAFTSPSEVEDLAHRLIES 413 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 ++ PI L +T+ SIG A + T+ E+LKNA+ A+Y AK G F Sbjct: 414 LSTPIPLDNESVTIGVSIGIAFAPTDGRTAEELLKNADAALYRAKTAGRGTFRFFEPEMD 473 Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R R + +DL A+ EL L Y P +R I G EAL++W HP+ G IS +EF+ Sbjct: 474 RKLQARQRLVQDLRNALTRDELRLDYQPFVRSETGVISGCEALLRWRHPERGMISPAEFI 533 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I I ++++++ R+ SW I +N++ +L + + A + Sbjct: 534 PLAEESGLIVPIGMWVIQQACREAASWPSTH-----RISVNVSPVQFRSRDLPQVILAAL 588 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + + +P+R+++ +E+V++ + + + +L ++R +G+ + LDDFGT S LSYL PF Sbjct: 589 TSSGLAPARLEVEVTEAVLIDDADTALDILRQIRSLGVRVALDDFGTGYSSLSYLRRFPF 648 Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S + I+++I MA+ + T+ A+ + E K L + GC+ +Q Sbjct: 649 DKIKIDRSFVRELDTRHDSQVIVQAIHDMAQGLGMTVTAEGVETEDQAKRLRQTGCEELQ 708 Query: 937 DSHVASPLGFNSIL 950 + P + + Sbjct: 709 GFLYSRPRPASELT 722 >gi|254470292|ref|ZP_05083696.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062] gi|211960603|gb|EEA95799.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062] Length = 1031 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 182/785 (23%), Positives = 336/785 (42%), Gaps = 71/785 (9%) Query: 197 GVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRAC 256 G++ L + + R M L + L G + Sbjct: 228 GISVALGV--LFGFFAPRKVMYPTILLSLIGGLASALGNAQHL-----TIEGVAALSLLA 280 Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM--VTASIARIT 314 S ++++++ I+F+ + H Y T GI + LF + P V A Sbjct: 281 SALSVTAARIVFIRT-----KTHKVTIYYTSLGIGSLVGLFGYTLALPSDSVLAGWTFDN 335 Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374 + + ++ M G IF + A L++ I + Sbjct: 336 FVLQAVGASLTTLWAFMTG--------LILFSIFKYSGMFQKADEIDLNDSPIVSTISQM 387 Query: 375 LVLIVILI------------GFTVIQHVLATG--YFSQGIFSDGERQSLA---------- 410 LI L+ T Q LA+ F + SD +R+ ++ Sbjct: 388 ENLIGKLVWHDAKLDERLPVRDTDPQERLASLFNSFLDKLQSDEKRRKISETSDSKQQEE 447 Query: 411 ---VLGSGDIVWD---WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 + + ++ V + +LG ++G M G + L ++ + R+ Sbjct: 448 LSKLATFAEGAFEGLAISTDGIIVECNHVLYELLGYSAGEMRGS--SLLSHVAPDYREKA 505 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R + + E + + + + +R R M GD + D+ +QK+ Sbjct: 506 RAAIQA-----NEPTPNEVILLSKTGERIPIEVRGRLM--EVGDENLRVSAVRDMRKQKE 558 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 IL A D LTG+PNR F +R ++ A + VMV+D+D++K IND+ G Sbjct: 559 DEARILHLAQHDMLTGLPNRTYFRERFQQAIENQACAEETISAVMVLDLDRFKDINDLYG 618 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 VGD ++ ++ RR+ + D +ARL G+ F II ++ + ++ + + ++ P Sbjct: 619 HPVGDKLIQTVARRLNACVTHHDTVARLGGDEFAIIQVNLKTTAEVGLLTNKIIEVLSKP 678 Query: 645 INLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 I++ I +ASIG A E++ A++A+Y AK G N F + Sbjct: 679 IHVGNNITIRTSASIGIALIPEHGTDPDELMSKADIALYEAKEAGRNTFAFFEDKMEEAI 738 Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + ++ DL A+EN EL L + P R IVG EAL++W+HP+ G I+ + F+ +A Sbjct: 739 LLRRTMEGDLRNALENEELQLHFQPQARSDTRSIVGFEALLRWNHPEKGLIAPNNFIPVA 798 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I I ++L W ++ + +N++ D L + ++ ++++ Sbjct: 799 EESGLIIPIGRWVLNEACAQASQWPERY-----RVGVNLSPVQFCDEYLIQEVEGALARS 853 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 +P R++L +ESV++ + R+ L +L+++GI++ LDDFGT S LSYL PFD + Sbjct: 854 GLTPERLELEITESVLIHDDRRALNTLRQLKELGITIALDDFGTGYSSLSYLRRFPFDRL 913 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S ++G T + AI+R++I + + + +IA+ + E +++ L CD +Q Sbjct: 914 KIDRSFVSGVTQTPELAAIIRAVIDLGQALGMEVIAEGVETEPELELLRNESCDEVQGYL 973 Query: 940 VASPL 944 + P Sbjct: 974 IGRPQ 978 >gi|70732650|ref|YP_262413.1| developmental regulator MorA [Pseudomonas fluorescens Pf-5] gi|68346949|gb|AAY94555.1| developmental regulator MorA [Pseudomonas fluorescens Pf-5] Length = 1282 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 150/565 (26%), Positives = 267/565 (47%), Gaps = 17/565 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G A + + N L Sbjct: 714 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSQVLDQLPNMLTV- 772 Query: 457 HINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +D+ + R +L + + E ++ + + + + I + + GD+ Y+ Sbjct: 773 --DDQQEAHLRYVLKQLNQHST--WEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVC 828 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 +DI+E+K S + I A+ D LT +PNR F DRL T L + + +M +D+D Sbjct: 829 FFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSW-VVLMFLDLD 887 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KI 630 ++K IND LG A GD +L + R+ + D +AR+ G+ F ++L ++ + Sbjct: 888 RFKPINDSLGHAAGDRMLKEMATRLLGCVDDDDTVARMGGDEFTLLLQPRSSREMALNRA 947 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N Sbjct: 948 IHVAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKN 1007 Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + ++ S +R+ ++ DL A+E E L Y P + + G EAL++W HP+ Sbjct: 1008 NFQFYQADMNASALERLELESDLRHALEQEEFVLYYQPQFSGDGKRLTGAEALLRWRHPR 1067 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + +F+ + EEL ++ + +++ R + SW P + +NI+++ D Sbjct: 1068 RGLVPPGDFIPVLEELGLVVDVGDWVISEACRQLKSWHQAKVRVP-KVSVNISARQFSDG 1126 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + ++ T P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S Sbjct: 1127 QLGMRIATILKDTGLPPACLELELTESILMREVSEAMQILDGLKNLGLSIAVDDFGTGYS 1186 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL P D +K + + + G E+ I R+II MA ++ +IA+ + ++ Sbjct: 1187 SLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEF 1246 Query: 927 LTRMGCDYIQDSHVASPLGFNSILK 951 L GCD +Q P+ N Sbjct: 1247 LREHGCDEVQGYLFGRPMPANRFEA 1271 Score = 70.4 bits (171), Expect = 2e-09, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + S+ + +R + D+++ D +P + +LG Sbjct: 565 IGVAKDITDQIEASESLRDSEQRYRMLAESISDVIFSTDSKLSLNYVSPSVHAVLGYDVE 624 Query: 444 SMHGPIRNWLPYI-HINDR-------DNFRTILD--SFVGYRRGRLQYE---FRVRAADN 490 + W I + D LD + R ++Q + F AD Sbjct: 625 WIFQN--GWQSTIANPQQLSGIYTLMDRVSKALDKPEQLAQLRSQVQTQLFLFDCLRADG 682 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G +G+ DI++Q+++ + + A Sbjct: 683 RKIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLRMAAT 726 Score = 58.0 bits (139), Expect = 7e-06, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 4/151 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 I + + + S V D ++ D++ R + + + LG Sbjct: 432 ILSISDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNK 491 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIR 500 +H + +H D D + + +L Q + R R Q+ IR + Sbjct: 492 TELHQMGEYFWEILLHPEDADLYHRLRQEQRHSAYAQLLQCQLRFRHRSGQWRRFEIREQ 551 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + + + R IG+A DIT+Q ++ E + Sbjct: 552 ALARDRYDQVTRIIGVAKDITDQIEASESLR 582 >gi|167031719|ref|YP_001666950.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166858207|gb|ABY96614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 1276 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G A + + L + Sbjct: 708 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLT-V 766 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R ++ ++RG + E ++ D + + I + + GD+ Y+ Sbjct: 767 DEQQEGHLRYVVKQL--HQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFF 824 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+E+K S + I A+ D LT +PNR F DRL L + +M +D+D++ Sbjct: 825 TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRF 883 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 884 KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIH 943 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 944 VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ S +R+ ++ DL A+E +E L Y P + + G EAL++W HP G Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ + EEL ++ + ++L +R + +W P + +NI+++ D +L Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDGQL 1122 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ ++ P+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1123 GTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSL 1182 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ +IA+ + ++ L Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ + Sbjct: 1243 EHGCDEVQGYLFGRPMPAHQFEA 1265 Score = 69.2 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 54/154 (35%), Gaps = 15/154 (9%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 SQ + +R + D+++ D + +P + ++LG + + W Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDSLLKLNYVSPSVQSVLGYQADWIFAN--GWQ 626 Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQYE------------FRVRAADNQFHWMIIRIR 500 I + ++++ Q F AD + + +R+ Sbjct: 627 SIIANPAQLTGIYSLMERVSKAMGEPSQLAQLRSQLPTQLFLFDCLRADGRKIPIELRLV 686 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + + +G+ DI++Q+++ + + A Sbjct: 687 LVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 720 Score = 66.1 bits (160), Expect = 3e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ R+ + + LG Sbjct: 426 ILSISDITSRKQVELSLLEREGFWSDVVRTVPDQLYVQDVLSQRMIFSNRHLGQTLGYDR 485 Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500 + + + H D +++ + LQ + R R D + IR + Sbjct: 486 TELAQMGDRFWELLLHPEDAAHYQALRQQQRDSGHDQPLQCQLRFRHRDGGWRCYDIREQ 545 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ G + R IG+ D+T Q + S + A Sbjct: 546 VLTRDAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586 >gi|307151595|ref|YP_003886979.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306981823|gb|ADN13704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 1409 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 147/579 (25%), Positives = 283/579 (48%), Gaps = 8/579 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + + + + ER A++ + + + V + G Sbjct: 832 RLVLAHDITERLKAEKALQESKERFHRAIVDAPLPILIHAEDGEIVQVNHAWTELSGYHL 891 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + I +W + +D R+++D + EF + + P+ Sbjct: 892 DELS-TIADWTEKAYGERKDIVRSVIDQLYEIDGKVEEGEFAITIKSGETRIWDFSSAPL 950 Query: 503 -SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 ++G L I +A DITE+K++ E + + D LTG+PNR LDR+ + Sbjct: 951 GKLADGRRL-IISMAIDITERKQAEEQLRHSVLHDGLTGLPNRTLLLDRVEQAIKRKQQQ 1009 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 N ++ ID+D++K +ND LG VGD +L ++ ++ ++ D +AR G+ F I+L Sbjct: 1010 PNYLFAILFIDLDRFKVVNDSLGHLVGDQLLKTIADKLQRCVRPTDTVARFGGDEFVILL 1069 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 A + + L E+E +ASIG +S + T SE+++NA++AM Sbjct: 1070 EDLTIWTDATKMAQRITEEFESSFTLQEQEYFTSASIGITFCSSPEQTPSELVRNADIAM 1129 Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y +K G F + + + + ++ +L LA+E E + Y PI+ LM+ ++G E Sbjct: 1130 YRSKEAGRARYTMFDPIMHTQATQLLELETNLRLALEREEFIVYYQPIVSLMNRNLLGFE 1189 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILI 798 AL++W HP+ G IS + F+ +AEE +I + ++L R + +W++Q + + + Sbjct: 1190 ALVRWIHPEKGVISPANFIPVAEETGLIIPLGEWVLRESCRQMKAWQEQFIGAENLRVSV 1249 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ K L L + ++++T +KL +ES++M N E+ LL +++ I + Sbjct: 1250 NLSGKQLQQPNLINRIDNILTETGLEGKNLKLEITESMLMNNKEQVSELLLQMKAKKIQV 1309 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S LSYL Y+P DT+K + S ++ ++ + I+ +II +A +++ ++A+ Sbjct: 1310 SIDDFGTGYSSLSYLHYLPVDTLKIDRSFVSRMSQVGENFEIVEAIITLAHHLQMDVVAE 1369 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + E +++L ++GC++ Q + PL I+ L+ Sbjct: 1370 GVETEQHLRQLQQLGCEFGQGYFFSKPLESEKIVSWLER 1408 Score = 120 bits (302), Expect = 9e-25, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 1/152 (0%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I +I+ + + ER LA+ GSGD +W+W++ + P+ LG Sbjct: 458 IETALIKSQAKYEQLVEKLSKSEERLQLALEGSGDTIWEWNLGTGELYCDPNWIRRLGYD 517 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 I W I + L++++ + L E++++ + ++ W+ R + Sbjct: 518 PREEAINIEWWRSKIDPETLSDHEAALENYLNGKTEYLALEYKIQTLEGEWLWIGGRGKC 577 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + L+ +G DITE K++ E + Sbjct: 578 IAYDQQRKPLKILGTHRDITETKQTQENLRQQ 609 Score = 71.9 bits (175), Expect = 6e-10, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 52/166 (31%), Gaps = 3/166 (1%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + L+ +L++ L + ++ + + R V + + + Sbjct: 271 LMSGLLITTILLMSLWRYISLRPFYRLQQIEAALRASESRYRGIVEDQSEFICRYRPGGT 330 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 ++ + I+ D+ + + + + +E RVR Sbjct: 331 LTFVNQAYCRYFQKTPAAVLDN--TFWDLIYSEDQPQVAQNI-ASLTPENPMITHEHRVR 387 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + W R + + +I+ + + DIT+ K+ + Sbjct: 388 LSSGEIRWNQWTNRVIMDEKRNIIEFQAVGRDITQLKQVEAALRQL 433 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 11/148 (7%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLA 441 + Q + + + E+ L + + +W +D+ + G Sbjct: 708 SIAIGQDITERKRIEEILRESEEKYRLFFDANPNPLWVYDLETFAFLEVNQATIEHYGYT 767 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRI 499 D +L+ ++ ++R R A+ + + I Sbjct: 768 REEFL--AMTIRDIRPPEDVP----LLEQYILQINPHFNRSGQWRHRKANGEIIDVEITS 821 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLE 527 + G R + +A+DITE+ K+ + Sbjct: 822 HGL-EYAGRKARLV-LAHDITERLKAEK 847 Score = 47.6 bits (112), Expect = 0.010, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 10/140 (7%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + T + + E V ++ +D + + + I G + + Sbjct: 594 RDITETKQTQENLRQQQELLKTIVEQIPVMLAYFDQHYNLLWVNREWEKIWGWSLE--NR 651 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + L +R + +++ +G+ + +F++ D + + S+G Sbjct: 652 QKGDLLAEFEPE--SEYRQSVLNYIKSAQGKWR-DFKILVRDGRIIDTSW--ANVKLSDG 706 Query: 508 DILRYIGIANDITEQKKSLE 527 I I DITE+K+ E Sbjct: 707 TS---IAIGQDITERKRIEE 723 >gi|114045822|ref|YP_736372.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] gi|113887264|gb|ABI41315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] Length = 1504 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 144/555 (25%), Positives = 272/555 (49%), Gaps = 18/555 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465 + + V + + P + I G + + IH RD F Sbjct: 958 VLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKY-----LIHLAYSRQQRDLFN 1012 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 I + ++ E +R + + + I + + G+ ++ + DITE+KK+ Sbjct: 1013 GIEQQLLRHK--HWAGEIWIRNKARKAILVWLEINQVIDVKGETSHFVAVFTDITERKKA 1070 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNI-VALLFLDLDRFKHINDSMGH 1129 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +GD +L ++ R+ ++ D +ARL G+ F IIL + + + K+ P Sbjct: 1130 HIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF 1189 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L ++ +T++ SIG + + + ++K A+ AMYHAK G N+ + + + + Sbjct: 1190 LLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATR 1249 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 V ++ L A+ +EL LVY P L + + GLEAL++W H + G IS +EF+ +AEE Sbjct: 1250 HVQLEAGLKQAISRNELSLVYQPKFCLRNGSLTGLEALLRWHHSELGPISPAEFIPLAEE 1309 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++ + + W + I + +N++++ L ++ ++ ++ + Sbjct: 1310 TGIINQIGHWVINHACQQLAEWNELGLG-NISMAVNLSARQLK-ADIISTIEVALAVSGL 1367 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES++M NP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K Sbjct: 1368 PAKVLELELTESMIMANPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + AI +II +A ++E ++A+ + + + L GCD +Q ++ Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1487 Query: 942 SPLGFNSILKLLKER 956 PL L LL++R Sbjct: 1488 KPLSAQDCLALLQQR 1502 Score = 102 bits (254), Expect = 4e-19, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 I + ER LA+ SGD +WDW+I +V T + S S+ H Sbjct: 827 SIRASEERLKLALWASGDGMWDWNIQEQQVYRTHTDIPVPQWNSHSLLHDNA------HP 880 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517 DR+ F+ +L + R + E+R+ + + W++ R + + +N+ +R G Sbjct: 881 EDRERFKQVLTEHLLGRSPFFEVEYRIEHSPGNWLWILERGKVVETNAQAQPVRMTGTTR 940 Query: 518 DITEQK 523 +IT +K Sbjct: 941 NITSRK 946 >gi|297539270|ref|YP_003675039.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297258617|gb|ADI30462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 1036 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 145/589 (24%), Positives = 262/589 (44%), Gaps = 18/589 (3%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + ++ Q + ++S + IV D+ I G Sbjct: 451 AELALSISELSAKQSLAELKYQKSAVDEHA--IVSVTDVQGIITYANSKFCKISGYTEEE 508 Query: 445 MHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + L H + F+ + + + E R D +W+ I P Sbjct: 509 LLGQDHHILSSGYHP--KGFFKEMYLTLATGK--PWHDEICNRTKDGHLYWVDTTITPFM 564 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +G YI I DIT++K + E A D LT + NR+ LDRL L SA Sbjct: 565 ADDGKPKSYISIRTDITQRKAAEEKNNILALYDTLTNLANRRLLLDRLKQALASSARSSR 624 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R ++ +D+D +KK+ND LG VGD +L ++ R+ ++ D +AR G+ F ++L Sbjct: 625 -RGALLFLDLDHFKKLNDTLGHDVGDTLLQAVASRLTSCIREGDTVARFGGDEFVVLLAD 683 Query: 624 ENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 + + + D A M ++ P L TASIG + ++ E+LK A+ Sbjct: 684 LSEHAFEAAAQTKDIAEKMIITLNQPYQLKTNIYHNTASIGATLFVGHELEIDELLKQAD 743 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY +K+ G N + F + ++ +L A++ + L Y + + Sbjct: 744 IAMYQSKNEGRNTLCFFDPKMQEAIAARVDLENELRKAIQEQQFQLHYQIQVS-STGQAF 802 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G I F+ +AEE +I I ++L+ + +W+ + + Sbjct: 803 GAEALIRWQHPERGMIPPYNFITLAEETGLILQIGQWVLDTACAQLKTWQQIPLTQNLLL 862 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++K + + ++A + K +P+ +KL +ES+++ N + L KIG+ Sbjct: 863 AVNVSAKQFFQVDFVDQVKATLQKYDVNPTYLKLELTESMLVYNINDIITKMNALSKIGV 922 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 +LDDFGT S L YL +P +K + S + + AI+R+II MA ++ +I Sbjct: 923 IFSLDDFGTGYSSLQYLKMLPLSQLKIDQSFVRDIATDKSDAAIVRTIITMAHSLGIDVI 982 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 A+ + + + L GC Q + P+ + L++ + ++K+ Sbjct: 983 AEGVETDEQKQFLLDNGCVQYQGYLFSRPVQIDEFDYLIRTKMQILKSA 1031 Score = 55.0 bits (131), Expect = 7e-05, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 7/160 (4%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + L + +++I I L Q E +V + D ++ + Sbjct: 300 VVDLLKYLMPIVLIFICILGYILYLRHRERKQA-EESLEMMRFSVDNAHDSIFWINREGH 358 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + + M L + + T + RRG + E R R Sbjct: 359 ILYVNLAACMEREYSLKEMLQMRIFDLD---PDYQPGIWTPHFEDLS-RRGSISLETRHR 414 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + + + + N NG + + DITE+K++ Sbjct: 415 TKNGRIFPVEVSANYI-NLNGKEFNF-AVLRDITERKQAE 452 >gi|56419233|ref|YP_146551.1| hypothetical protein GK0698 [Geobacillus kaustophilus HTA426] gi|56379075|dbj|BAD74983.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 947 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 144/664 (21%), Positives = 269/664 (40%), Gaps = 15/664 (2%) Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357 M YY + R + + ++ ++ + + A Sbjct: 294 GMLLYYSAALSGYTRPLFDGVAAVFGQAALFPAVEVLVKDAYTAVRPAAFAAISLAETAA 353 Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417 + G ++ + + + +R + DI Sbjct: 354 SAESGLLSPWSSPPEG-----MMTLAQLMSTSSRDMERLHVRLQMSEQRYKSLFEHNTDI 408 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ D+ + P +LG + L YIH ND + Sbjct: 409 VYSTDLHGRLTSVNPAFEQVLGYKKEEILYTNS--LKYIHPNDIPRVTRYFYRALRGNIQ 466 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 E + + ++ P+ +G + GI +ITEQKK+ E I A+ D Sbjct: 467 TYNLE--IPTKSGERLLFQMKNIPII-VDGKKVGIYGIGRNITEQKKAEEKISYLAYYDI 523 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 T +PNR +++ + LD + + V +ID+D++K IND +G GDD+L L Sbjct: 524 DTNLPNRTKWMELFSEQLDKAKQKRR-KMAVALIDLDRFKWINDSVGHYAGDDILRQLVE 582 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 RI +L L R G++F ++ + + A+ + + +A PI +E VTAS Sbjct: 583 RIRRVLPPSAELGRFHGDKFCLLFPLKTEVQAATEAALRIVREVARPIVYDGKEFFVTAS 642 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAV 715 +G A + +L++A++A+ AK GGN VE + ++ L A+ Sbjct: 643 VGLAMFPDDGEDEHALLRHADMAVNMAKKGGGNRVERYCAQMNEEAMHRLEMGGHLRRAI 702 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E +EL+L Y PI+ + + EALI+W HPK G + EF+ +AEE +I I ++L Sbjct: 703 EENELFLCYQPIVDVHTGAVKATEALIRWRHPKLGLVRPDEFIPLAEETGLIHEIGRWVL 762 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + R W++ + I +N++ + ++ + ++ SPS + L +E Sbjct: 763 KTACRQTKQWQEITGNNRLSIFVNVSPVQFQHERFVDNVKQALKQSRLSPSCLHLELTEH 822 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894 ++ + + LRK+G+ + +DDFG+ S YL +P +K + + + Sbjct: 823 SMLRYLSSTMRTMDELRKLGVGIAVDDFGSGYSSFHYLKRLPATILKIDRAFIEQLHANA 882 Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI++++I M + IA+ + + L + C Y Q PL +++ + Sbjct: 883 SDEAIVKAMITMGHGLGLETIAEGVETPEQLNRLRDLQCTYAQGYVFCPPLLAEEVMQYV 942 Query: 954 KERF 957 E+ Sbjct: 943 TEKQ 946 >gi|152999827|ref|YP_001365508.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151364445|gb|ABS07445.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS185] Length = 921 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 143/560 (25%), Positives = 268/560 (47%), Gaps = 15/560 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA S + V D + I G + G R + H Sbjct: 368 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 425 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D+ F + ++ + G+ E R + I I + + GD+ ++ + DI Sbjct: 426 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 483 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK++ + A+ D LT +PNR F+ +L + + NL+ ++ID+D +K I Sbjct: 484 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 542 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ + D+L+R+ G+ F ++ +N+ +R+ Sbjct: 543 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQ 602 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TAS+G + + + + +L+NA+ AMY AK+ G N+ + S Sbjct: 603 VFEQPFIVSTGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 662 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L+ + VG EAL++W P+ G IS + Sbjct: 663 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAV 722 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I I L++LE R + W + I +N+A + L + + ++ Sbjct: 723 FIPVAEKIGLIHEIGLWVLETACRQGMRWLREGKHFG-RIAVNVAGQQLQRSSFVDDVKR 781 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T ++L +ESV+M NP+ + L RL +GI L++DDFGT S L+YL + Sbjct: 782 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKRLGDLGIELSVDDFGTGYSSLNYLKKL 841 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ IIA+ + + L + CD Sbjct: 842 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 901 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q + P + L Sbjct: 902 AQGYLFSRPQLPEDLDAFLS 921 >gi|257095583|ref|YP_003169224.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048107|gb|ACV37295.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1399 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 147/581 (25%), Positives = 278/581 (47%), Gaps = 10/581 (1%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + L G ++ + + + + A S + + D + + Sbjct: 820 ITLRGEVILHTLWRDISERRVTETRLRLLAAAFEHSAEAIMVSDRDNRILEVNDAFCRLT 879 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G A+ + G L + +RT+ + G Q E R D ++ + Sbjct: 880 GYAADEVRGSDPRLLSS-GRTSAEEYRTMWQAI--NSTGHWQGEVWDRRKDGSYYPKWLS 936 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I + + G+ YIG DI+E+K + E I A D LT +PNR + RL L + Sbjct: 937 ISTIRGAEGNTEYYIGSFVDISERKAAEEKISHLAHFDTLTDLPNRSNLQGRLDQALASA 996 Query: 559 ATDDNLR-PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + R VM +D+D++K IND LG VGD +L+ + R+ ++ D++ARL G+ F Sbjct: 997 RREGHGRSVAVMFLDLDRFKNINDTLGHHVGDALLLEVAARLRSSVRDSDVVARLGGDEF 1056 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L ++L A + K+++ + + T+SIG A + + + +++NA Sbjct: 1057 VVVLTG-ADALAAERVAGKILKALSRAYQIEGHALHSTSSIGIAVFPADGESVEVLMQNA 1115 Query: 678 ELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMYHAK G N+V+ F ++ SDR ++EDL LA++ + L Y P + + Sbjct: 1116 DAAMYHAKSAGRNNVQFFTASMNEAASDRRQLEEDLHLALQQKQFVLHYQPQVDAQ-RRV 1174 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +EAL++W HP G + + F+ +AE+ +I I ++LE I +W A + Sbjct: 1175 FAVEALLRWQHPHHGLVPPARFVPLAEDTGLIVPIGQWVLETACAQIKAWSVDARTRKLQ 1234 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++++ + E ++ I + +P+R+KL +ES+V+ N + + ++ +G Sbjct: 1235 VAVNVSARQFRQPDFVELLRQAIDNSGANPARLKLELTESLVLDNVADTIDKMNAIKLLG 1294 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 ++ ++DDFGT S LSYL +P D +K + + + E I ++I+ M +++ + Sbjct: 1295 VTFSMDDFGTGYSSLSYLTRLPLDQLKIDRAFVCRLPENRSDAVIAQTIVTMGRSLGLKV 1354 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +A+ + E + L GCD Q + PL ++ L+ Sbjct: 1355 VAEGVETEAQRQFLDSHGCDGYQGFLFSRPLAVDAFEDFLQ 1395 Score = 71.5 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 16/164 (9%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 V A + + AV S + + + P + G + G Sbjct: 579 WVFADISERREAEEESRNLLQAVEQSPVAIVITNRNAEIEYVNPSFTRVTGYSRLEAIGQ 638 Query: 449 -IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 R +D +R++ + + + F R + + W I P+ +G Sbjct: 639 NPRILQSGEAPSD--TYRSLWQTLLEGK--VWTGLFHNRRKNGELFWEKASIAPIIGDHG 694 Query: 508 DILRYIGIANDITEQKKSLE--GILCNAFQDNLTGIPNRQSFLD 549 ++ Y+ + D+TE+ ++ + AF R+ F D Sbjct: 695 EVTHYLAVKEDVTERLRADKLLQESEEAF---------RRLFED 729 Score = 51.9 bits (123), Expect = 6e-04, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 51/151 (33%), Gaps = 5/151 (3%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + V + + ++ ER + +G + + + P + ++ + Sbjct: 324 REAKVVADLVERDRQLRANSERLEIFQRLAENAGQGIGMAQLDGSLLYANPALRRMIDMP 383 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G+ ++ + + + + + + G+ E +R+ + I + Sbjct: 384 QGAACSDY-SFKQFYSREEANRLQHAVLPMLL-PAGQWTGEIELRSLSGRTTPAIHTLFV 441 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + N+ + + DI+E+K+ E Sbjct: 442 VHNTADEPPVIATVLADISERKEMEERNRQL 472 Score = 43.0 bits (100), Expect = 0.22, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 11/143 (7%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 VI I ++ + ++ E +LG+ + R V+ + I Sbjct: 451 VIATVLADISERKEMEERNRQLLAEME----TLLGNALVGIVHLRQRCVVSCNRRLEEIF 506 Query: 439 GLASGSMHGPIRNWLPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G A G + G + + + V R E +R D W Sbjct: 507 GYAPGELIGKSSQVF---YPSIEVFEKIGARAYAVVAENRN-FSGELTLRRKDGSLFWGA 562 Query: 497 IRIRPMSNSNGDILRYIGIANDI 519 + R + + + I + DI Sbjct: 563 LTGRAI-DPSQPHAGSIWVFADI 584 Score = 40.7 bits (94), Expect = 1.3, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 6/153 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-AS 442 V + V + + E + D + + +LG + Sbjct: 700 LAVKEDVTERLRADKLLQESEEAFRRLFEDAKDPLLLL-KDGSFIDCNRATLELLGYGSK 758 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500 + G + + + + R G ++E+ + AD + + + Sbjct: 759 AQLLGRDAADISPARQPDGQASGEKAAALIAAALRIGYHRFEWTHQRADGSPVPVEVTLT 818 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 P++ IL + DI+E++ + + A Sbjct: 819 PITLRGEVILHTL--WRDISERRVTETRLRLLA 849 >gi|124267849|ref|YP_001021853.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum PM1] gi|124260624|gb|ABM95618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylibium petroleiphilum PM1] Length = 1063 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 157/601 (26%), Positives = 273/601 (45%), Gaps = 11/601 (1%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 PA V G + A + + E + S + + D R + Sbjct: 467 PAWAVLSARRVRYQGQDAVLTAFAPINHLKLMERRLELWAKVFEASSEGILIVDAQRRIL 526 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 T + G + G + + + D V R G Q E +VR Sbjct: 527 TANQAFSRHTGYELQEVVGEKPSLMLAVEQTDEQ--SAAFWQSVSNR-GTWQGELQVRRR 583 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 + + + + + S GDI YI + DI+++KKS + I A D LT +PNR Sbjct: 584 NGSEYPAWLMVNAVRQSQGDISHYIFTSIDISDRKKSEQRIRFLADHDVLTELPNRSLCT 643 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 +RL + + + VM ID+D++K IND LG +GD +L S+ RR+ E ++ D Sbjct: 644 ERLRMAVQQAQRSGQ-QVAVMFIDLDRFKDINDSLGHHIGDGLLRSVARRLLEAVRAGDT 702 Query: 609 LARLSGNRFGIILISENNSLKIADFA-IAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 ++RL G+ F I+L + ++ + I P + E+ V+ S+G A + Sbjct: 703 VSRLGGDEFVIVLNGVQHIDEVTHIVDQRLIPLIRQPHLVEGAELHVSCSVGIAVFPDDA 762 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 E++K+A+ AMY AK G + E F ++ R+ + DL A+E + L + Sbjct: 763 TDIDELMKHADTAMYQAKAGGKDAAEFFTAEMTQRAESRMQLDADLRRALELGQFELHWQ 822 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + ++G+E L++W HP+ G +S + F+ +AEE +I I +++E R + +W Sbjct: 823 PRVSAAGGVLLGVEGLLRWQHPQRGLVSPAHFIPLAEETGLIVPIGAWVIEEACRQVAAW 882 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 R Q P + IN++++ L D+ L + ++A + + P ++L +ES+VM + ER+ Sbjct: 883 RAQGL-PSFGVSINLSARQLRDDGLTDLVRASLLRHGVPPGVLELELTESMVMDDAERNL 941 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903 + LR +G+ L +DDFGT S L+YL P D +K + S + AI +II Sbjct: 942 RQMHTLRDLGVGLAIDDFGTGYSSLAYLNRFPIDKLKIDRSFVHDMLADPTDRAITMAII 1001 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF-PLVKN 962 + + ++A+ + L CD +Q P+ + L ER P+ + Sbjct: 1002 GLGHALGLQVVAEGVEEPRAAALLREARCDELQGYLFGRPMPVPAFEAWLAEREAPVTRV 1061 Query: 963 T 963 T Sbjct: 1062 T 1062 >gi|320322619|gb|EFW78712.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. glycinea str. B076] Length = 1245 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 267/563 (47%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 677 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 735 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 ++ R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 736 ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 793 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 794 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 852 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 853 KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 912 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 913 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 972 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 973 QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1032 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL +++ + ++L R + W P + +NI+++ D +L Sbjct: 1033 LVPPNDFIPVLEELGLVEEVGDWVLTEACRQLKQWHQARVRVP-KVSVNISARQFSDGQL 1091 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1092 GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1151 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D ++ + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1152 NYLKQFPIDVLEIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1211 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ + Sbjct: 1212 EHDCDEVQGYLFGRPMPASQFEA 1234 Score = 76.5 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 528 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 587 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 588 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 645 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + NG+ G+ DI++Q+++ + + A Sbjct: 646 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 689 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 I + + + S V D ++ D++ RV + LG + Sbjct: 395 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 454 Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + +H +D +++ + L LQ R R +N + +R + Sbjct: 455 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 514 Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533 + ++ + R IGIA DITEQ + S + A Sbjct: 515 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 555 >gi|298506546|gb|ADI85269.1| sensor diguanylate cyclase/phosphodiesterase, CHASE4 and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 873 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 146/595 (24%), Positives = 272/595 (45%), Gaps = 18/595 (3%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VR 425 + L V+ V + + QG ER L V + + + Sbjct: 281 VTYFLTWFAVVGVCFVFVINLFWRRLLESLQQG-RRSEERNRLVVERTNQAILLLEPGAG 339 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + P +LG + + G + L + L+ + R E + Sbjct: 340 TIIDANPATCVLLGFSRNELAGSDIHAL-LSGP--VQEVDSELERCLRETR-----ELSL 391 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 D + + + + L + +DITE+++ E +L A D LTG+PNR Sbjct: 392 CHRDGAELVVEAMATQIPHGDDQALCL--MFHDITERRRFQEELLHQATHDTLTGLPNRS 449 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 DRL ++ + + +++ D+D +K +ND LG GD +L S+ RI ++ Sbjct: 450 LLEDRLNQAVEGARRRGQM-VALLMFDLDNFKVVNDTLGHTAGDQLLRSVAARIRSFVRS 508 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D ARL G+ F I+L + A + R +AMP +L REI +TAS+G + + Sbjct: 509 CDTFARLGGDEFVIVLTNLTRMDDAVTVAESFRNILAMPFSLGGREIFITASMGISLFPD 568 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLV 723 T ++K A+ AMYH K G N + F ++ + R+ I+ L A+E E+ L Sbjct: 569 DGDTMEALIKKADTAMYHIKESGRNSFQFFAEEMNQKVNARLAIETGLRRALEKGEMLLH 628 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P + +VG+EAL++W+ P G IS ++F+ IAE+ +I + ++L + Sbjct: 629 YQPRLEPGTGAVVGMEALVRWNSPDMGLISPADFIPIAEDSGLIVEVGDWVLATACCQAL 688 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W + + + +NI+++ + ++ + + +I ++ +P ++L +E+ + N + Sbjct: 689 EWHRMGHD-SLRVSVNISARQFVRHDFVDRVVRIIEQSGLAPHFVELELTETALTHNVDE 747 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + ++ RLR+ GI++++DDFGT S L+YL P D +K + S + + AI+ + Sbjct: 748 TVKIMSRLREQGITISIDDFGTGYSSLNYLKRFPVDVLKIDKSFIDDMVKRREDAAIVAT 807 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 II +A ++ ++A+ + +K L C+ IQ + + PL + R Sbjct: 808 IIGIAHHMHMKVVAEGVETAEQMKLLMEGDCEEIQGFYFSRPLPPEEFESYITGR 862 >gi|120596930|ref|YP_961504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. W3-18-1] gi|120557023|gb|ABM22950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella sp. W3-18-1] Length = 1216 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 164/607 (27%), Positives = 281/607 (46%), Gaps = 22/607 (3%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 L + A+ L+ G ++ ++ + + + SG+ + Sbjct: 620 KHYLHKNGQSVAVRLNGALVTGANGEQLVLFIVEDITEQERTVARVNLLAQVFQQSGEGI 679 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY------IHINDRDNFRTILDSFV 472 D V + I G + + G +L I R L+ Sbjct: 680 TIIDANDIIVDVNTAFSQITGYSREDIIGKNCRFLEAKRTDKSIDPQ----VRAALEQ-- 733 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G Q E R D + + + + +G + YIG DI+E+K S E I Sbjct: 734 ---TGFWQGEVWDRHKDGYDFPKWLMMSVVRDESGAVSHYIGSFTDISERKMSEERIHFL 790 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D+LT +PNR S L + + + + VM ID+D +K IND LG VGD +L Sbjct: 791 AHHDSLTLLPNRLSLQSSLEIVFGEALASQS-QIAVMFIDMDHFKNINDTLGHHVGDQLL 849 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + + RR+ ++ DI+ARL G+ F ++L S+ N ++A A A+R ++ + + Sbjct: 850 LEVARRLKNIVDNNDIVARLGGDEFVVVL-SDTNHDEVASLAEALRSGLSQTYIIDNNSL 908 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710 + SIG + + + T ++KNA++AMY AK G N+ + F + ++R I+ Sbjct: 909 HSSPSIGISLFPTDGNTVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLITERQHIETG 968 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L + N EL L Y P I + ++V +EAL++W HP++G IS F+ IAEE+ MI I Sbjct: 969 LRQVLANEELQLHYQPQIDIRTGQVVSVEALVRWQHPEFGLISPDRFISIAEEIDMIIPI 1028 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++LE + +WR + + +N+++ L + + + ++ K ++L Sbjct: 1029 GQWVLETAMAQLAAWRAA-GATRLRMAVNLSAHQLRKDTIVADITNVLLKHQLGKGALEL 1087 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ESV M PE++ LL LR+ GI L +DDFGT S LSYL +P D +K + S + Sbjct: 1088 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1147 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 AI + I M+ + T++A+ + E + L+ MGCD +Q + + PL Sbjct: 1148 IETDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGYYFSKPLPAEE 1207 Query: 949 ILKLLKE 955 + ++ Sbjct: 1208 CFRFIQR 1214 Score = 50.3 bits (119), Expect = 0.002, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 7/153 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI--VWDWDIVRDRVTTTPDIATILGL 440 + + + + F + +R + + D V I G Sbjct: 522 TMALSKEIARSQAFQATLVESEQRYRNLFDKAPVGHVLKQVD-NGRFVAINQAFTDITGY 580 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + + W + + R Y+ + Q + + Sbjct: 581 SLDEL-NQLDPWE--LTPKRYQLSEAEQLERLKQTRRYGPYQKHYLHKNGQSVAVRLNGA 637 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 ++ +NG+ L + I DITEQ++++ + A Sbjct: 638 LVTGANGEQL-VLFIVEDITEQERTVARVNLLA 669 >gi|39997606|ref|NP_953557.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|39984498|gb|AAR35884.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] Length = 873 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 148/596 (24%), Positives = 270/596 (45%), Gaps = 20/596 (3%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VR 425 + L V+ V + QG ER L V + + + Sbjct: 281 VTYFLTWFAVVGVCFAFIINLFWRRLLESLQQG-RRSEERNRLVVERTNQAILLLEPGAG 339 Query: 426 DRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + P +LG + + G I L + L+ + R E Sbjct: 340 TIIDANPATCVLLGFSRNELTGADIHALLSG--P--VQEVDSELERCLRETR-----ELS 390 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 + D + + + + L + +DIT++++ E +L A D LTG+PNR Sbjct: 391 LCHRDGAELVVEAMATQVPHGDDQALCL--MFHDITDRRRFQEELLHQATHDTLTGLPNR 448 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 DRL + + + +++ D+D +K +ND LG GD +L S+ RI ++ Sbjct: 449 SLLEDRLNQAVAGARRRGQM-VALLMFDLDNFKVVNDTLGHTAGDQLLRSVAARIRSFVR 507 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D ARL G+ F I+L + A + R +AMP L REI +TAS+G + + Sbjct: 508 NCDTFARLGGDEFVIVLTNLTRMDDAVTVAESFRNLLAMPFFLGGREIFITASMGISLFP 567 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYL 722 T ++K A+ AMYH K G N + F ++ + R+ I+ L A+E E+ L Sbjct: 568 DDGDTMEALIKKADTAMYHIKESGRNSFQFFAEEMNQKVNARLTIETGLRRALEKGEMLL 627 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P + +VG+EAL++W+ P G IS ++F+ IAE+ +I I ++L Sbjct: 628 HYQPRLEPGTGAVVGMEALVRWNSPDMGLISPADFIPIAEDSGLIVEIGDWVLATACCQA 687 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + W + + + +NI+++ + ++ + + +I ++ SP ++L +E+ + N + Sbjct: 688 LEWHRMGHD-SLRVSVNISARQFVGHDFVDRVVRIIEQSGLSPHFVELELTETALTHNVD 746 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 + ++ RLR+ GI++++DDFGT S L+YL P D +K + S + + AI+ Sbjct: 747 ETVKIMNRLRERGITISIDDFGTGYSSLNYLKRFPVDVLKIDKSFIDDMVKRREDAAIVA 806 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +II +A ++ ++A+ + +K L C+ IQ + + PL + + R Sbjct: 807 TIIGIAHHMHMKVVAEGVETAEQMKLLMEGNCEEIQGFYFSRPLPPEEFERYIAGR 862 >gi|56477015|ref|YP_158604.1| hypothetical protein ebA2811 [Aromatoleum aromaticum EbN1] gi|56313058|emb|CAI07703.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 813 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 151/576 (26%), Positives = 264/576 (45%), Gaps = 27/576 (4%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP------- 448 D ER LA S + + D+ V+ P I G+A+ + G Sbjct: 241 ARKRDKERLQLADKVFENSREAIVITDLGHRIVSVNPAYTEITGIAATAAQGTCFRPGSD 300 Query: 449 ----IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + R + + G E Q + + I + + Sbjct: 301 DGDSGEEGEGAGGPDSRTVW------AIVGEHGSWSGETTGVRCGGQRYPRTLMINGVRD 354 Query: 505 SN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +I +I I +DIT +K++ I A+ D LTG+ NR S RL + + + Sbjct: 355 PETREITHFIAIFSDITARKRAEADIQHLAYHDTLTGLANRFSLTARLQLSVAEARRNGQ 414 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R VM +D+D++K IND LG VGD++L + RR+ + ++ D +ARL G+ F ++L Sbjct: 415 -RLAVMFLDLDRFKHINDSLGHPVGDELLKQVARRLRDAVRETDTVARLGGDEFVVVLQG 473 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + ++ P + E+ TASIG + + + +++NA+ AMYH Sbjct: 474 IGGAHDVTHVAAKLLAQLSAPYCVDTTELHTTASIGISLFPDDSADPAALMRNADTAMYH 533 Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + + R + R+ ++ L AV E L Y P + GLEAL Sbjct: 534 AKAAGRAKFQFYTDEMNRAATARLDLERKLRGAVARGEFELWYQPQFDSRHGHLTGLEAL 593 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G I+ F+ +AEE +I I ++L R W D P + I +N++ Sbjct: 594 VRWRHPQDGLIAPLRFIPLAEETGVIVEIGTWVLREACRQARQWLDAGL-PELRISVNLS 652 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L + L + + ++ + P ++L +ES VM NP+ + LL L+ +G+ + +D Sbjct: 653 VRQLREKCLVDTVWTTLAASGLRPGLLELEITESAVMDNPDEAVALLQALKNLGVRIAID 712 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P D +K + S ++ I+ + + +A N+ ++IA+ + Sbjct: 713 DFGTGHSSLSYLKLFPLDHLKIDRSFISDIEHDANDTMIVAAAVSLAHNLGLSVIAEGVE 772 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + L +GCD +Q H + P+ + + LL+ Sbjct: 773 SAVQVARLRELGCDELQGFHFSRPVTADVVENLLRS 808 Score = 43.8 bits (102), Expect = 0.15, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 36/141 (25%), Gaps = 19/141 (13%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH- 457 + + V D V + +L G + + Sbjct: 120 EVVQRAAMLETILDSIPCAVSLVDRELQLVACNEEFKRLLDFPPHLFAGSLPSLETLFRY 179 Query: 458 --------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 D D L + + F R D ++I+ RP+ Sbjct: 180 NAARGEYGPGDPDEVVASLLARALHPAPHS---FERRRRDGTV--LLIQGRPLPQG---- 230 Query: 510 LRYIGIANDITEQKKSLEGIL 530 ++ DIT +K+ E + Sbjct: 231 -GFVTTYTDITARKRDKERLQ 250 >gi|56476521|ref|YP_158110.1| hypothetical protein ebA1965 [Aromatoleum aromaticum EbN1] gi|56312564|emb|CAI07209.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 1020 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 143/608 (23%), Positives = 277/608 (45%), Gaps = 9/608 (1%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + T + ++P + V+ + + LA S + ER Sbjct: 409 LVMVPVGGAIPTGAVGAYWLEPHRSDDEEVAVLEVLASAAGTALARQLASDRLRQSEERF 468 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + V + VW+ D V +P + G M G WL IH +DR Sbjct: 469 RVLVEETAQAVWEGDAAGALVVHSPSWSAYTGQTFEEMAG--FGWLDAIHPDDRARVERE 526 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + V RR E R+R ++ W +R P+ ++G++ +++G+ DIT++K++ + Sbjct: 527 WRAAVAGRRV-FDTELRLRHYLGEWRWANVRAAPLVGADGEVEKWVGMNIDITDRKEAEQ 585 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 A D+LT +PNR+ + +L + + + + ID++++K +ND+ G Sbjct: 586 RAHEAALHDSLTALPNRRLIFEYAEHLLAAAGR-KHSQGAFLFIDLNRFKPVNDLYGHEA 644 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + R+ ++ DI+ RL G+ F ++L + + + A + +S++ P + Sbjct: 645 GDRLLQEVACRLKAGVRKEDIIGRLGGDEFIVLLPYLEQTQEAMNIAQYIVESVSQPFMI 704 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705 + E++V+ SIG + + +T +++ A+LAMY AKH RG V + Sbjct: 705 RDAEVSVSPSIGISLFPQHGMTVDGLIRAADLAMYQAKHCSRGAYCVYEPNLEHRDDVST 764 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ L A+ + L Y P+I L + G EAL+++ + F+ +AE Sbjct: 765 SVEGRLKQALAKNTFALHYQPVIDLRTGAVRGAEALLRFAGEDCEALGPGLFIPVAESSG 824 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I AI ++ R I+W + P+ I IN++ + + ++ +P Sbjct: 825 LIGAIGEWVTAEACRQHIAWAAEGL-EPVPIAINVSPVQFRQRRFVQRLADILRDGGMNP 883 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 + + L +ES VM N + + +L +R +G+ + LD FGT CS L++LG +P D +K + Sbjct: 884 ASLLLEITESAVMDNADDAAGILAAVRALGVKVVLDGFGTGCSSLAHLGSLPLDKLKIDR 943 Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + G + A++ ++I + + + ++A+ I + L GCD Q + P Sbjct: 944 SFVEGIGQDSTSRAVVEAVIALGRTLGLEVVAEGIESGDVLAYLEAHGCDQGQGYFLGRP 1003 Query: 944 LGFNSILK 951 L + + Sbjct: 1004 LPRDEFAR 1011 >gi|149182402|ref|ZP_01860878.1| hypothetical protein BSG1_09378 [Bacillus sp. SG-1] gi|148849865|gb|EDL64039.1| hypothetical protein BSG1_09378 [Bacillus sp. SG-1] Length = 975 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 140/566 (24%), Positives = 259/566 (45%), Gaps = 11/566 (1%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 S+ I E + D V+ D+ + P G + + G + + Sbjct: 408 RKLSENIQISEEYYRSLFENNTDFVYSTDLEGRFNSVNPTFLKTFGYSEEELIGKLS--I 465 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 +I D + + + E + + + I+ P++ +G + Sbjct: 466 SFIFEEDIPRIKRHFYRTLSGKEQFY--EIWIPSKSGEVQLFHIKNIPIT-VDGHCVGLF 522 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 GI +ITEQKK+ E I A+ D TG+PNR F + + + R V+ +DI Sbjct: 523 GIGRNITEQKKTEEKITYLAYFDAETGLPNRIKFRELAEEFISRAKKKKR-RIGVLFLDI 581 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K IND LG + GD +L+ L RI L L R ++F I++ + K+ Sbjct: 582 DRFKLINDTLGHSAGDQILIELAERIKNALPKGAYLGRFGSDKFTILISKNVTNEKLKQV 641 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + ++I MPI +E + ASIG + +++LKNA+ A+ AK GG+ + Sbjct: 642 AELIAENIQMPIIQGNQEFYIKASIGVGVYPDHGTDLADLLKNADTALNWAKSNGGDQIV 701 Query: 694 SFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + V ++ L A+E ELY+VY PI+ L D+ ++G EAL++W+HP G Sbjct: 702 FYTNEMNIMAMEKVKMESYLRKALEREELYIVYQPIVELNDKRVIGAEALLRWNHPYLGV 761 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S EF+ +AEE +I +I ++L + W+++ P +I +N+++ Sbjct: 762 VSPMEFIPLAEETGLIGSIGNWVLTEACKQAKEWQEK-GFPDFYISVNVSANQFQQPSFT 820 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + + S + L +ESV++ + + + L +G+ + +DDFGT S L Sbjct: 821 NEINHALKTSGLSAESLCLELTESVMIQHSGHTIDRMEELAALGVKIAIDDFGTGYSSLG 880 Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL ++P +K + S + E AI++++ M K + ++ + I + L+ Sbjct: 881 YLKHLPLHVLKIDKSFVQNIEESSPDYAIVQAVSMMGKGLGMQVVVEGIETSEQMVLLSH 940 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 + CD Q ++ P+ + + K ++ Sbjct: 941 LNCDLGQGYFISRPVFPDEMEKWMRN 966 >gi|56477116|ref|YP_158705.1| diguanylate cyclase/phosphodiesterase domain-containing protein [Aromatoleum aromaticum EbN1] gi|56313159|emb|CAI07804.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Aromatoleum aromaticum EbN1] Length = 1121 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 146/552 (26%), Positives = 266/552 (48%), Gaps = 10/552 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + + D V D+ + V+ I G + G + L +D F L Sbjct: 573 VIESTRDGVMVTDLSQRIVSVNRAWCEITGFSEEEALGKTPSMLKSGLQDD--AFYRQLW 630 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 V + G Q E R + + + + + + + + +RY+G+ DI++ K+S + Sbjct: 631 DSVAH-TGHWQGEIWNRRKNGELYPQWLSVSTVYDEDHKPVRYVGVMTDISQLKQSQAQL 689 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LT +PNR RL ++ ++ L V+ ID+D++K IND LG A GD Sbjct: 690 ERLAHYDPLTNLPNRLLVQSRLEHAIEQASRQQ-LGLGVLFIDLDRFKNINDSLGHATGD 748 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-L 648 ++LV+++ R+ L+ D LAR G+ F +I+ + + A A + + P +L Sbjct: 749 ELLVAISWRLRTRLRPEDTLARWGGDEFLVIIDNLRKPDESASVAQNLIDLMGEPFSLPG 808 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVM 706 + V AS+G + + +++E++++A+ A+ AK +G N F S V Sbjct: 809 GEVVYVGASVGISLYPQDGTSAAELIQHADAALNQAKAQGRNTFRFFTEALSQAAQRHVD 868 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L +A+E + Y P I + + G EAL++W G +S + F+ AEE + Sbjct: 869 LERRLRVALEQQAFVVHYQPQIDITTGRVTGCEALVRWQATDEGAVSPNRFIPFAEESGL 928 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + ++LE R +WRD P+ + +N++++ L EL + + A++ +T P Sbjct: 929 IVPLGEWVLETACRQARTWRDAGLA-PLRVGVNLSARQLWQAELPDRIAAILQRTGLPPE 987 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ES++MG+ ++ LG L+ +G+ L +DDFGT S L+YL P + +K + Sbjct: 988 CLELELTESMIMGHEAQAEQRLGLLKSMGLGLAIDDFGTGYSSLAYLKNFPIEMLKIDQG 1047 Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + R I II +A+ + ++A+ + + + LT GCD Q + PL Sbjct: 1048 FVRHIPDDRKDMEITAGIIALARKLNIKVLAEGVETDAQLAFLTEQGCDAYQGYLFSRPL 1107 Query: 945 GFNSILKLLKER 956 KLL +R Sbjct: 1108 PAEDFAKLLAQR 1119 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 99/311 (31%), Gaps = 23/311 (7%) Query: 273 LHWNRWHAKVGYIT--FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330 L R H + + + ++ + + L + Sbjct: 145 LEALRTHRHLAHYAPHIHLTIATSAAEVLARLPAALDTASDFDVLLFDHAPGDLDGLELA 204 Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390 L +P ++ L + +D I L L + Sbjct: 205 RIVRHERRLALPLVLVSAHGGEDLVARTMELGVDDFIAKYPGYLHALPATLEKVRERAEL 264 Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMH 446 + + + + + S +++ I D + +I +ILG++S Sbjct: 265 IRERA---ELRATTAHLTHLLSASPTVLYTLQIRDDGKPQTSWVSDNIVSILGVSSADAL 321 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 WL ++H ++R + + R G +E+R+ Q W+ R + + + Sbjct: 322 -SPGWWLAHVHPDERAAWIATQTVLL--REGHRSHEYRLLGGKEQVTWIRDDARVLRDDS 378 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD----- 561 G + +G +IT QK++ + + NR D L ILD A Sbjct: 379 GTAVEVVGTWTEITAQKQTELLQAARSA------VLNRLIGDDPLPVILDDVARRLESLA 432 Query: 562 DNLRPTVMVID 572 +R +++++D Sbjct: 433 PEMRVSILLLD 443 >gi|319650647|ref|ZP_08004787.1| hypothetical protein HMPREF1013_01392 [Bacillus sp. 2_A_57_CT2] gi|317397828|gb|EFV78526.1| hypothetical protein HMPREF1013_01392 [Bacillus sp. 2_A_57_CT2] Length = 861 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 133/575 (23%), Positives = 271/575 (47%), Gaps = 11/575 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442 IQ + + ++ + + ++ D++ +V + + I G + Sbjct: 138 IATIQDITEKRRMEEKLYENERKIGQIYENLDVGIYSADLIERKVFHFSRGVEGIFGYTA 197 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + W IH +D + + + + ++ ++R+ + W+ P Sbjct: 198 DELIDNFDLWDEVIHPDDLQSLEANRVNLIHGK--SIRCQYRIFNKSGELRWVNDHSIPY 255 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G+++R G DITEQK+ E + AF D+LT +PNR+ F +L +++ ++ Sbjct: 256 LDERGELIRVDGFVTDITEQKRLEEKMRHMAFYDHLTDLPNRRYFDQKLQSLV---KDNE 312 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 R V+ D+++ K+IND G + GD++L + +RI E L AR+SG++F +I Sbjct: 313 KHRFAVLFFDLERLKQINDTFGHSAGDELLRLVAKRIREKLNVTFFSARISGDQFAVIKE 372 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 A + + + P ++ E+ +T SIG + + ++ +++ EM++N E ++Y Sbjct: 373 HIQEVEDPAQLGDCIYQIFSEPFHIESFELKITPSIGISIYPNNGVSAEEMVRNTETSLY 432 Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK +G N + + + +++D+ A+ N E L Y P + +I+ EA Sbjct: 433 HAKQKGKNRFQVYHPSMDIESYKLFTLEQDMRKALVNDEFILEYQPRVDTKTGKILSAEA 492 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+WG +S EF+ +AEE I I +++ ++ R + W+++ + I +NI Sbjct: 493 LLRWSHPEWGRVSPLEFIPVAEESGFIINIGEYVIRKVCRQLFDWKEKGLSI-VPISVNI 551 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L N L ++ + + I++ +ES ++ E +L L +G+ + L Sbjct: 552 SPLSFLKNSLVSMIKEALDEYHLEAELIEIELTESSLINYSENVISVLKELGSMGVKIAL 611 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S ++ L FD +K + + + + + I ++I +A + ++A+ + Sbjct: 612 DDFGTGYSSITQLKNYKFDVLKIDKTFIQAMDKTAEDAIITANLIQLAHGLNMKVVAEGV 671 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L + CD IQ + P+ +S + L Sbjct: 672 ETFEQFYSLRKNECDQIQGYLFSKPIPPSSFEQKL 706 Score = 83.8 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 3/123 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFR 465 + A + ++D+ DR + + I GL + R +L Y+H +DR F Sbjct: 33 LNQAQKIANIGSLEYDVENDRGFWSDQLFRIFGLKSQKGFFPDYRMYLSYLHPDDRPAFE 92 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + R+ D + ++ R + +G + I DITE+++ Sbjct: 93 DQFQKLLKEMN-SVDLICRIIRQDGEERYIHQRANYFAEDSGSP-KIIATIQDITEKRRM 150 Query: 526 LEG 528 E Sbjct: 151 EEK 153 >gi|78222207|ref|YP_383954.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter metallireducens GS-15] gi|78193462|gb|ABB31229.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter metallireducens GS-15] Length = 739 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 165/743 (22%), Positives = 319/743 (42%), Gaps = 25/743 (3%) Query: 228 VLGYISIDFGFLSK----LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283 + Y + GF L PS +L+ A + + + L+ F +R Sbjct: 1 MGVYCVMAGGFFYFSRFGLFLSPSQHILLLAALAAVVCYNLLLQFSR-----DRLARGFR 55 Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVL-YYTYFIIYHGMKGYERAVLLIP 342 + F I +L + + AS + + + L+ Sbjct: 56 LLNFLQIILDLVLVSVLIHTSGGAASWFWPAYLFVTIEASFLIEDRREVWLVGGLGGLLY 115 Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA-----TGYFS 397 +L+ + + +++ L L + + + + + + + Sbjct: 116 GAVLVLEHLNIVPYVRMPFVGSELHHDHLYLLLTWLWVSLLNAAMAAIASYFMTVIRRET 175 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + ER + + + D++ + LG ++ + +H Sbjct: 176 DAVREGEERLATFLDTANDLIHSVTPDGRLLYVNEAWQRTLGYSAEEADAVP--FFDILH 233 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + R+ L V E A D + + + + + I Sbjct: 234 PDSREQCCAELQRVVSGDALS-PMEAVFTAKDGRSVIVEGSLSCAHGGD-ESSVIWSICR 291 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+K + E + A D LTG+PNR F+DRL L+ + V+ +D+D++K Sbjct: 292 DITERKHAEEQLYRLAHHDTLTGLPNRILFMDRLQQAKALANRY-RYQVAVLFLDLDRFK 350 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG VGD +L + RI ++ D +AR+ G+ F IIL++ + + + Sbjct: 351 IINDTLGHPVGDHLLQQVAHRIAGCVREVDTVARIGGDEFTIILVNVDTVEDVKRMGQKI 410 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 K++A P N+ E+ VTASIG + + S +++K A++AMY K G N+V+ + Sbjct: 411 LKTLAAPFNIDTHELFVTASIGISLFPSDGDNLDQLVKKADIAMYCVKGEGRNNVQFYSP 470 Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + R++++ L A++N E + Y P + ++ + I +EALI+WDHP G +S Sbjct: 471 QMDANADKRLLLETSLRKALDNREFRVYYQPKVDIVSKRITAMEALIRWDHPILGLVSPG 530 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AEE +I I ++L W Q +PP+ + +N++ L E ++ Sbjct: 531 EFIPLAEETGLIIPIGEWVLRAACFQNCEWVRQ-GIPPMRVAVNLSGYQFQQKNLLETIR 589 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T + ++L +ESV+M NP+ + +L +LR +G+ +++DDFG S L++L Sbjct: 590 GILDETGLTADLLELEITESVIMQNPDFAVSVLNQLRDLGVHISIDDFGIGYSSLAHLKR 649 Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +T+K + S + AI +II M ++ +IA+ + E + L+ CD Sbjct: 650 FSVNTLKIDKSFVRDVEINSADAAIATAIIAMGNSLNLKVIAEGVETEGQLSFLSDNKCD 709 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 +Q ++P+ + + ++E Sbjct: 710 EVQGYLFSTPMPPEKVAEFMREH 732 >gi|330966724|gb|EGH66984.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1243 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 263/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 675 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 733 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R IL +G + E R++ + + + + I + + GD+ Y+ Sbjct: 734 ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 792 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 851 KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 910 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK G N+ Sbjct: 911 VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKECGKNNF 970 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G AL++W HP+ G Sbjct: 971 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAGALLRWRHPRRG 1030 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 1031 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1089 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 1090 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1149 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IA+ + ++ L Sbjct: 1150 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1209 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD +Q P+ + Sbjct: 1210 EHGCDEVQGFLFGRPMPPSQFEA 1232 Score = 75.0 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 526 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDTHLTVNYVSPSVERALGYSAD 585 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEF--RV-----RAADN 490 + W I + F ++ RL+ E R+ AD Sbjct: 586 WI--TRNGWSAAIANPQQLTGFDALISRISKVLNKPQELARLRDEVTTRMFLFDCLRADG 643 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + + +G+ G+ DI++Q+++ + + A Sbjct: 644 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 687 Score = 53.0 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 + + + + LG +H + +H D +++ + L LQ Sbjct: 433 LSQRMIYSNHHFGHTLGYNKFELHAMGEFFWEILLHPEDAKSYQDMRLRQRHHGHNELLQ 492 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532 R R +N + +R + + ++ + R IGIA DITEQ + S + Sbjct: 493 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 552 Query: 533 A 533 A Sbjct: 553 A 553 >gi|226311854|ref|YP_002771748.1| signaling protein [Brevibacillus brevis NBRC 100599] gi|226094802|dbj|BAH43244.1| probable signaling protein [Brevibacillus brevis NBRC 100599] Length = 815 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 155/572 (27%), Positives = 275/572 (48%), Gaps = 23/572 (4%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVW--DWDIVRDRVT--TTPDIATILGLASGS 444 + A ++ + +D R V + V+ D + IA LGL S Sbjct: 250 RIEAETALAEALQNDFRR---TVQNLQNCVFKIVTDQRGNITYTLCEGKIAEELGLTSER 306 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 M + + E ++ D I + P+ Sbjct: 307 MLRKTSY--EIFPYEVAEQMESYFRRAFAGESVTF--ELKLSGND-----YYITLSPI-E 356 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 NG+I+ +G DITE+KK+ E I A D+LT +PNR F ++L + + D Sbjct: 357 ENGEIVEMVGSMIDITERKKAEETIRYMAHYDSLTNLPNRTLFHEKLAEAMLKAKQKDE- 415 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + VM ID+D++K IND LG ++GD +L ++ R+ L+ D ++RL G+ F I L Sbjct: 416 KIGVMFIDLDRFKNINDTLGHSIGDVLLQAVANRLICCLRKEDSVSRLGGDEFAIFLTGV 475 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + S++ I L EI +T SIG + + +LK+A+ AMY A Sbjct: 476 THRE-AGEIAQRIITSMSESITLDHIEIFITPSIGISMYPDDGDDIEALLKHADAAMYLA 534 Query: 685 KHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +G N+ + F + ++ ++ +L A++ + L Y P I L +I+G+EALI Sbjct: 535 KEQGKNNYQFFSEELHQVLAKKLQLERELRKALDEKQFTLHYQPKIHLQTGQIIGMEALI 594 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +WDHP G I +F+ IAEE +I + +++ + +W++ + + +NI+ Sbjct: 595 RWDHPDLGLIPPIQFIPIAEETGLIVPLGEWVMRTACQQTKAWQEA-GFTQLAVAVNISL 653 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + + N L E + +++ +T +P ++L +ES+ + N + + +L RL+ +G+S+++DD Sbjct: 654 RQFMQNNLIEMITSILEETGLAPQYLELEITESMAL-NVDYTIRILNRLKALGVSISIDD 712 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 FGT S LSYL P D +K + S + + AI+++II MA N++ +IA+ + Sbjct: 713 FGTGYSSLSYLSQFPIDRLKIDQSFLRNLNPQNQAIIKTIIHMAHNMKIAVIAEGVETHE 772 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L C+ +Q + PL I L+ Sbjct: 773 HVDFLKEQLCNEVQGYFYSKPLPTKEIDSFLQ 804 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 6/118 (5%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468 A+ S IV D I + G + H + F+ + Sbjct: 142 ALDESS-IVAITDDKGVITYVNDKFCEISRYEVDELVGNTHRVINSRYHS--KSFFKLMW 198 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 ++ R + E + RA D +WM I P + G +Y+ I DIT++ ++ Sbjct: 199 ETIKQGR--VWKGEVKNRAKDGTEYWMNTTIVPFLDDRGVPYQYVSIRTDITDRIEAE 254 Score = 64.6 bits (156), Expect = 8e-08, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTIL 468 A+ S ++ D + + + G N + H R+ F+++ Sbjct: 14 ALEESS-VISITDEKGIITYVNHNFCQLSKFNREELIGKSHNIVDSGFHP--RNYFKSLW 70 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 D+ + + E + R D +W+ + + P N +G + +Y+ I DIT++K E Sbjct: 71 DTISRGK--VWKGEMKNRGKDGTEYWLSMTLVPFMNDSGFLYQYVAIGTDITKRKLMEE 127 >gi|257094976|ref|YP_003168617.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047500|gb|ACV36688.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1399 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 144/552 (26%), Positives = 254/552 (46%), Gaps = 13/552 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468 G+ + D + V I G + + G + L H D+ ++++ Sbjct: 855 VFEQGGEGIAITDAACNIVMINQAFTRITGYSEVEVLGRNPSLLASGRH--DQAFYQSMW 912 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 +S G Q E R D + + I + + +G YIG DIT+ K++ Sbjct: 913 ESI--ESLGHWQGEIWNRRKDGSVYPEWLLISRV-DGDGAPTHYIGTFIDITQHKEAEAS 969 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 I A D LTG+PNR +R+ L + +M +D+D++K +ND LG VG Sbjct: 970 IQRLAHFDALTGLPNRSLLEERVRHDLARAHR-GREALALMFVDLDRFKNVNDSLGHRVG 1028 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L+ + R+ ++ D ++RL G+ F ++L S ++ A A + + +A + Sbjct: 1029 DALLIQVAERLRRAVRDEDTVSRLGGDEFIVVLPS-TDADGAAHVAAKLLEVMAPAYRIE 1087 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706 + E+T + S G A + + + + +A+ AMY AK G N F + Sbjct: 1088 QHELTCSLSAGIAMYPADGESFEALSMSADTAMYRAKQSGRNAYCFFTAEMQERSARNLQ 1147 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 I+ DL A+EN EL L Y P L D +VG EAL++W HP+ G +S EF+ IAEE + Sbjct: 1148 IENDLRRALENGELRLHYQPQFTLADRRLVGAEALLRWQHPQLGMVSPVEFIPIAEECGL 1207 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I ++L + W+ + PP+ + +N+++ L + + ++ + Sbjct: 1208 ILPIGEWVLRAAVSQLRVWQQEGL-PPMTVAVNLSAVQFRQASLTDVVSRILDAEGLAAQ 1266 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ESV M NP + + +LR +G+ +++DDFGT S +SYL +K + S Sbjct: 1267 FLELELTESVAMDNPLAAIATMDKLRALGVRMSIDDFGTGYSSMSYLKRFRVHKLKIDRS 1326 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + AI+ + I +A+++ IA+ + E + L GCD Q + PL Sbjct: 1327 FVADLAADPEDEAIVTATISLARDLGLQTIAEGVESEAQLAFLRAKGCDEAQGYLFSRPL 1386 Query: 945 GFNSILKLLKER 956 ++ Sbjct: 1387 APAQFAAFVRAH 1398 Score = 89.6 bits (221), Expect = 3e-15, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 1/138 (0%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 R +A + + W+ D++ D++ + +LGL G G + +H Sbjct: 403 ERKRAEARLRMATEATQLVFWELDLLSDQLRYDTSMLQVLGLDHGEDPGSTGALMELVHP 462 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIAN 517 + R + + +E ++ + W+ R R ++ G + +G A Sbjct: 463 DHRAALTESFRAAMASAEPVFSFEHQIVTHSGEGVWLQTRGRVAQRDAAGRAVLAVGTAM 522 Query: 518 DITEQKKSLEGILCNAFQ 535 +IT++K++ +L + Q Sbjct: 523 NITDRKRAEAALLRRSEQ 540 Score = 65.7 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 14/148 (9%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-- 447 + Q + ++ + + + D P I G A+ + G Sbjct: 696 LAERRQVEQALRESEALKASVLASAACGIVATDPQGLITVFNPGAEAIFGYAAHEVVGKV 755 Query: 448 PIRNWLPY---------IHINDRDNFRTILDSFVGYRRGRLQYEFR---VRAADNQFHWM 495 W + + D+ V R Q + R D + + Sbjct: 756 TPTLWHDAEEIAAAAVALSRDLGCRVEAGFDALVARARCSGQVDERETAGVRKDGRRITI 815 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQK 523 + + M ++ G + Y+G DIT QK Sbjct: 816 RLAVTVMRDAQGALAGYLGTIVDITAQK 843 Score = 45.3 bits (106), Expect = 0.056, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 9/164 (5%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 +G +L L+G ++ V+ + + E + D +++ + Sbjct: 258 TRYLGYALLAGSLVGALLLIWVVTLRRLVRQRTATLE---ATLDAIPDPLFELGLDGRYH 314 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRA 487 A +L ++ G + + + L Q+E +R Sbjct: 315 DCHTPRADLLAAPPDALIGRLLT--DVLPAAAAATCLSALREAQATGHSAGQQFELPLR- 371 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 W + + G R++ +A DI+E+K++ + Sbjct: 372 --GGNFWFELSVARKPTGVGREPRFVVLARDISERKRAEARLRM 413 >gi|118578941|ref|YP_900191.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118501651|gb|ABK98133.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] Length = 705 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 154/597 (25%), Positives = 277/597 (46%), Gaps = 8/597 (1%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 + +++ +L V++ ++ + R + A + W+WD+ Sbjct: 108 DYLLKDTSFLDRLLAVVVRALQEVETRERLDRAKHSLRLSEARLARAQKIARLGSWEWDV 167 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + ++ I G G + W+ IH D F+ L + V + Sbjct: 168 RAGEIYWSDELYRIFGFTPGEPKRISKEWIYSLIHPADLPAFKQQLLTSVKTLQ-SFNMI 226 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 + + + I+ +G G DIT + K+ I D LTG+P Sbjct: 227 YHTTSRSGGELVVNIQGEVERGEDGRAWLISGTVLDITARIKAESEIHHLINYDTLTGLP 286 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR DRL + +A D ++ V+ +D+D++K +ND LG GD +L + RR+ Sbjct: 287 NRSLLHDRLRQAIAQAAQDRHM-VWVLCLDLDRFKGVNDTLGHRSGDKLLQEVARRLAAC 345 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 ++ D LARL G+ F ++L + + A + IA PI + + E+ TASIG A+ Sbjct: 346 VRESDTLARLGGDEFVVVLDGVVSEKGASIVAKKILTLIAEPIPIDDHELYTTASIGIAA 405 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSEL 720 + +LK+A+LAMY AK N+ F +R+M++ + A+E E Sbjct: 406 YPMDGEDGHTLLKHADLAMYKAKELDRNNFHFFSHDMNIKVMERMMLENSMRKALERDEF 465 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 +LVY P + I G+EAL++W+HP G ++ F+ +AEE I + ++L R Sbjct: 466 FLVYQPQVDARSGRITGVEALLRWNHPDMGLLTPDRFIYLAEETGFIVPLGEWVLMTACR 525 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 +W+ PP+ + +N++ K + L E + A++ +T P ++L +ES +M N Sbjct: 526 QNRAWQK-LGFPPLRVAVNLSGKQFGQHRLDEMISAILLETGLEPEWLELEITESAIMRN 584 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 +++ +L L++ GISL +DDFGT S LSYL + P +K + + + AI Sbjct: 585 ADQNIAILRSLKEKGISLAIDDFGTGYSSLSYLKHFPITRLKIDKTFVQDITTNPDDAAI 644 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 II MA+ ++ +IA+ + ++ L+ C +Q + PL + + LL++ Sbjct: 645 AEIIIAMAQTLKLNVIAEGVETRAQMEFLSTHTCFEMQGYLFSRPLTTDKFVYLLRD 701 >gi|302388230|ref|YP_003824052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium saccharolyticum WM1] gi|302198858|gb|ADL06429.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium saccharolyticum WM1] Length = 845 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 144/609 (23%), Positives = 282/609 (46%), Gaps = 7/609 (1%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY-FSQGIFSDGERQSLAVL 412 + L I L +LI + +G L + + E +LA+ Sbjct: 239 SSINANGALIGFISLLVLFLMGILIYMQMGLFKKDENLQHLASLHKELERLKESYTLALD 298 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + D +W+W+++ D + T+ I G A IH D R D+ + Sbjct: 299 SANDALWEWNLITDEIITSDKWIDITGNALEGHGISGILQKETIHQEDYPAVRAAFDACL 358 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 E+R+R D+ + W++ R + + G + G ++I E+K+ I Sbjct: 359 KGETREFNQEYRIRNRDDTYTWVLNRGKVYFDGEGLPGKVAGAVSNIEERKQRESKIEYM 418 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 AF D LTG+PN+ +F+ L L S + R ++++ID+D +K ND+LG+ D +L Sbjct: 419 AFYDTLTGLPNKMNFMSTLEETLG-SIENSLCRDSILMIDLDNFKIHNDLLGLDFCDQLL 477 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + R+ +L +++AR G+ F I++ + ++ + P L+E+ + Sbjct: 478 QQVGDRLTGILGQKNMVARFGGDEFLILIRDCKDMSEVKKLCQNILSIFGAPFVLMEKSV 537 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKED 710 ++ SIG + T++++L+NA+ A+ AK G N + ++ Sbjct: 538 YLSVSIGVVHCMEAGQTANDVLRNADTALNKAKESGKNQYCIYDAQMHDEIIRKSNVELC 597 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 + A+ +L + Y P L +I G+EAL + + G IS EF+ +AE +I + Sbjct: 598 IREALAKDDLLIYYQPQQDLFRNKIRGVEALARLHSKELGMISPFEFISVAEYTGLIIPL 657 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L+ + +W D + +NI+ L + + ++ ++++T + ++++L Sbjct: 658 GSWILKNACKQGKAWIDSGCKFG-KLSVNISVHQLRNENFYDLLKEVLNETQFPVNQLEL 716 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ESV++ + + +L +LR +G+S+ LDDFGT S L+YL +P D +K + S + Sbjct: 717 EITESVLLEFSQNNIEILKKLRSLGVSIALDDFGTGYSSLNYLTVLPIDILKIDKSFLGR 776 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + +E +++SI +A + ++++ + + L MGCDYIQ + A P S Sbjct: 777 ALESETEHQVIKSITELAHGLSLKVVSEGVETAEQKQILKDMGCDYIQGYYFAKPGDAKS 836 Query: 949 ILKLLKERF 957 + K + Sbjct: 837 VEKWFRREQ 845 >gi|317128931|ref|YP_004095213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] gi|315473879|gb|ADU30482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] Length = 1071 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 270/568 (47%), Gaps = 16/568 (2%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + ++ + + S D++ + + +P +A +LG + G IH N Sbjct: 21 VQNNVQEFEALLRYSTDVIGIINKDGGIIYQSPALAKVLGYTQNEIKGLNS--FQLIHPN 78 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + R + D V + ++ E R+R AD + + + + I I DI Sbjct: 79 ELHTVRNLFDDLVNNKISKVTKEMRLRHADGSWIFCEVTATNHLF-DKKIKGIIVNYRDI 137 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE+K E I + DNLTG+PN+ L + + + + R +++ID+D++K I Sbjct: 138 TERKLYEEEIHQLVYHDNLTGLPNQYMLDSFLESEIYKAK-YECTRLALLIIDLDRFKVI 196 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND +G +GD +L + +R+ ++ D+L R G+ F I+L S ++ + Sbjct: 197 NDSIGHTIGDQLLKEVGKRLVSIVSKSDLLVRKGGDEFVIVLPSIK-KDQVLKVVDNIIN 255 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P + +I + SIG + + T + K+AE AMY AK G F + Sbjct: 256 LLTSPFKIKSYDIFTSPSIGVSIFPEDGKTKDLLYKHAEFAMYQAKKSGNGQYHFFSSAE 315 Query: 700 F--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 F + I+ +L A+E + L Y P I L E++G+EALI+W+HPKWG IS + F Sbjct: 316 FNGDMNPYTIEVELRKAIEQKQFTLHYQPRINLSTGELIGVEALIRWEHPKWGLISPASF 375 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + IAE+ +I I ++LE + W+ + +N++ K L ++ Sbjct: 376 IPIAEDSGLIVPIGNWVLEEACKQNKIWQVSG--MSCVVSVNLSPKQFAHTNLASVIKNT 433 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + T P +++ +ES + + R+ L ++K+GI +++DDFGT S L YL P Sbjct: 434 LFNTGLDPHLLEIEITES-MTADITRTVATLEEIKKLGIQVSIDDFGTGFSSLYYLKKFP 492 Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +T+K + S ++ + I+++II MA+N+ ++A+ I + + L + C Sbjct: 493 VNTLKIDRSFVSELHNNPDEETIVKTIISMARNLNLNVVAEGIETKEQLAFLQQHLCHEG 552 Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963 Q + PL + +L+E+FP ++ + Sbjct: 553 QGFLFSKPLPPS----VLEEKFPTIQKS 576 Score = 83.8 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 3/136 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + E+ L D++ ++ +P +G ++ G + Sbjct: 710 DRKKAEDALQKSEEKYRLIAENMSDLILLLNVEGRVKYVSPSHKKYIGPKYENLLGKLS- 768 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 Y H D + L + + Q EFR + + P+ +G + Sbjct: 769 -FEYCHPEDIMKLKENL-VVIMQSKETSQVEFRCWDETRNWRIIEATGTPIIGKDGYVEH 826 Query: 512 YIGIANDITEQKKSLE 527 + + DITE++K+ E Sbjct: 827 IVVVGRDITEKRKTEE 842 >gi|82701959|ref|YP_411525.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC 25196] gi|82410024|gb|ABB74133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196] Length = 705 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 148/573 (25%), Positives = 270/573 (47%), Gaps = 9/573 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 L + + + + V S D + D+ + + G + + G Sbjct: 138 WSLRNITERREADAYKAQLAAIVESSNDAIIVQDLNGIITSWNAGAEGLFGYRASEVIGS 197 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L I + R+ I+ RR R + + + I M + G+ Sbjct: 198 SVEIL--IPPDLREEEGDIMCLIKSGRRADHFETVRW-GKGRKPIDVSVTISAMKDRAGN 254 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I+ I DIT++K+S E I A D+LTG+PNR DRL ++ + ++R + Sbjct: 255 IIGASKIVRDITQRKESQERIEYLAHYDSLTGLPNRTLLSDRLRIAIENARRY-SIRLAL 313 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +DID++K +ND LG +GD +L ++ +R+ ++ D ++R+ G+ F ++L + Sbjct: 314 LFVDIDRFKLVNDSLGHEIGDKLLKAVAQRMQSTVRQADTVSRVGGDEFVVLLSRIETAT 373 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A A + SI+ P + E E+ +TASIG + + + +S + +NA+ AMY AK +G Sbjct: 374 DAARSAEKLITSISQPYQIEEHELLLTASIGISIYPDNGKDASSLTRNADAAMYSAKGQG 433 Query: 689 GNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N + + ++R+ ++ DL A+ E++ +Y P I L ++G+EAL++W+ Sbjct: 434 RNRYQFYSEDLTYAAAERLRLEHDLRGALSRDEIFPLYQPQIELATGRVIGVEALMRWNR 493 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 G IS + F+ +AE+ +I A+ ++L + W + I +N+++ Sbjct: 494 AGQGLISPASFIPVAEDSGLILALGEYILRKACLQARQWHEHQGFQG-TIAVNVSAVQFR 552 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 N+ + + ++S+T + P ++L +ESVVM E +G L GI L +DDFGT Sbjct: 553 QNDFTDVVLRVLSETGFPPECLELEVTESVVMQGLESVVQKMGILESHGIKLAIDDFGTG 612 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL D +K + S + AI+R+I+ M +++ ++A+ + E Sbjct: 613 YSSLSYLRQFAIDRLKIDQSFVRDLPGDADAQAIIRAIVAMGRSLGLRVMAEGVETEAQA 672 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L + C Q A P+ N LK R Sbjct: 673 RFLQDIECTESQGYLYARPMKSNDFEAWLKTRN 705 >gi|253998125|ref|YP_003050188.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|313200192|ref|YP_004038850.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|253984804|gb|ACT49661.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] gi|312439508|gb|ADQ83614.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 738 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 151/585 (25%), Positives = 266/585 (45%), Gaps = 23/585 (3%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 L + + S DI++ D + + T+LG + +M G Sbjct: 143 LQNKSIHARLEESETLYQYLIDSSPDIIYTLDDNGNFTFINNRVETLLGYSRETMLGKHY 202 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA---------ADNQFHWMIIRIRP 501 L IH D + + R E R+R + + ++I Sbjct: 203 TLL--IHEEDYERAHHAFNERRTGNRAAKNVELRLRCQERRSERRQPEQNYITVVINAMG 260 Query: 502 MSN---SNGDIL-RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + +G G+A DITE+KK+ + I A+ D LT +PNR F DRLT + Sbjct: 261 IYGTHPEHGTPFNGTYGVARDITERKKAEQAITHQAYHDTLTDLPNRMLFKDRLTVAIHH 320 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + + + +M +D+D++K +ND LG GD++L + R+ ++ D LAR+ G+ F Sbjct: 321 AKRNKH-KLAIMFLDLDRFKWVNDTLGHLYGDELLKQVAARLRNCMREQDTLARMGGDEF 379 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L N A + + P L +REI +++SIG A + + ++K A Sbjct: 380 TMLLHELNQPDDATVIAQKIFDELKRPFMLDDREIFISSSIGIAIYPDHGDSIENLIKRA 439 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMYH K RG N + + S + ++ +L A+E ++ L Y P I L + Sbjct: 440 DIAMYHVKWRGKNGFQYYDPSMNSMFHKKLSLENELRRAIEKRQIVLYYQPKIHLDGHCV 499 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +GLEAL +W HP+ G +S EF+ +AEE +I A+ +LE + W+D Sbjct: 500 IGLEALARWHHPELGLVSPLEFIPLAEETGLIHALGEMLLEEACVQMRQWQDAGLN-NFS 558 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + INI+ + + ++ + I S ++ +E+++M + E S L L G Sbjct: 559 LAINISPQLVEEDAFVSRILTPIRHHQLSEDLFEIEITENLLMRDVESSISKLKELGSHG 618 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913 I + LDDFGT S L+YL P +VK + S ++ + + +I+ +I +A + + Sbjct: 619 IKIALDDFGTCYSSLAYLRRFPIHSVKIDKSFVSDISSTSENASIISAIAGIANGFKLDL 678 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 IA+ + + L +GC +Q + PL + ++L P Sbjct: 679 IAEGVETIPQMHTLQSLGCTKMQGFLFSKPLPAKEMTQVL--HNP 721 >gi|303248369|ref|ZP_07334630.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio fructosovorans JJ] gi|302490277|gb|EFL50191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio fructosovorans JJ] Length = 820 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 149/604 (24%), Positives = 291/604 (48%), Gaps = 14/604 (2%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 I + +++ A ++ T + + + FS S Sbjct: 224 GAVIWISENARVVREADGKAAYYEGTVVDITDRKRAEESAAAQRAYFSQL------FANS 277 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 + D+ R+ V + G + + G +I + + + Sbjct: 278 PQAISLIDMHRNIVDVNAAFEDLFGFRAVDLKG--FGMRAFIVPEPLLTECENVRTAILS 335 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + ++ R R D + + + P+ + G+ + I DI+E+K E I AF Sbjct: 336 GKSVVRETSR-RHQDGRLIPVSMIGFPIRIA-GETQGIVYIYQDISERKAFEEQITHQAF 393 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LTG+PNR F DRL L + D+ + V++ID++K+K IND +G A GD +L Sbjct: 394 HDALTGLPNRSLFADRLERALTRTRRRDDYQYAVLMIDLNKFKGINDTMGHAAGDLLLRE 453 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + RR+ ++ D +ARL G+ F +IL + ++ + ++ P L ++ Sbjct: 454 VARRLAGCVRSMDTVARLGGDEFAVILEELKSKKEVMAVVDRIGVTVEQPFCLCGTTVSP 513 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSSFRSDRVMIKEDLCL 713 ASIG T S ++L++A++AMY AK +G + + ++ + + ++ DL Sbjct: 514 GASIGIVLHTRDYAASEDVLRDADIAMYRAKEQGRLSMIFDRQMHQEILEAITLEVDLRN 573 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+E ++L L Y PI+ + +I G EAL++WDHP G + +F+ +AEE +I + + Sbjct: 574 ALEQNQLLLHYQPIVDVKTGDIAGFEALVRWDHPSRGLVPPVKFIPLAEETGLIVPLGRY 633 Query: 774 MLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 +++ R + +W+ + + + +N++ + + + L E + ++++T +PS +KL Sbjct: 634 VIDEACRQLRAWQLEMPEAAHLTVSVNVSCRQFVKDGLVEHVAGVLAETGLAPSCLKLEI 693 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +ESV+M + + L RL+ +G+ + +DDFGT S LSYL +P D +K + S ++G Sbjct: 694 TESVLMHDARVTARELQRLKDLGVKIAIDDFGTGYSSLSYLRQLPIDQLKIDRSFISGHE 753 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 ++ I++SII +A+++ T++A+ + + L CD Q + PL ++ Sbjct: 754 CNDESQEIVKSIISLARSLGLTVVAEGVECPDQLDRLRLADCDKAQGFMFSRPLDKDAAH 813 Query: 951 KLLK 954 +L++ Sbjct: 814 RLIR 817 Score = 81.2 bits (199), Expect = 8e-13, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 77/262 (29%), Gaps = 31/262 (11%) Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 AW L + + + + + + + + + + + Sbjct: 78 AWNLCGAALLRCTRWSAGENGAVDVSVSNFTVGAVDGRPVSCMLFRDISTRRRAEENLRA 137 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH--IN 459 + + + ++ + +A I G + M R+ ++ Sbjct: 138 AERKYRSIFENAVEGIFQTTPEGRYLEANRTLARIYGFVSVVEMTQHFRDIGSQLYVDPG 197 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 RD+F L + R +E ++R D W+ R + ++G Y G DI Sbjct: 198 RRDDFVRQLSAHDQVR----DFESQIRKKDGAVIWISENARVVREADGKAAYYEGTVVDI 253 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT---TILDLSATDDNLRPTVMVIDIDKY 576 T++K++ E R F + L N ++D++ Sbjct: 254 TDRKRAEESAAAQ-----------RAYFSQLFANSPQAISLIDMHRN------IVDVN-- 294 Query: 577 KKINDVLGIAVGDDVLVSLTRR 598 D+ G D L R Sbjct: 295 AAFEDLFGFRAVD--LKGFGMR 314 >gi|330943926|gb|EGH46137.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 983 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 147/563 (26%), Positives = 261/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + G + + L + Sbjct: 415 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 473 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R IL +G + E R+R + + + + I + + GD+ Y+ Sbjct: 474 ESEQETRLRHILRQL--NGQGTWEGEIRLRRRNGEHYPAWVGITAVLDDEGDLASYVCFF 531 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E++ S + I A+ D LT +PNR F DRL + L + +M +D+D++ Sbjct: 532 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 590 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632 K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 591 KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIH 650 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + S+ P L RE VTASIG A S+++KNA+ AMYHAK G N+ Sbjct: 651 VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKECGKNNF 710 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + ++ + +R+ ++ DL A+E E L Y P + + G EAL++W HP+ G Sbjct: 711 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 770 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + ++F+ + EEL ++ + ++L R + W P + +NI+++ D +L Sbjct: 771 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 829 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T SP+ ++L +ES++M + +L L+ +G+S+ +DDFGT S L Sbjct: 830 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 889 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P D +K + + + G E+ I R+II MA ++ ++IAK + ++ L Sbjct: 890 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAKGVETHEQLEFLR 949 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 CD +Q P+ Sbjct: 950 EHDCDEVQGYLFGRPMPPAQFEA 972 Score = 75.8 bits (185), Expect = 4e-11, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + SQ + +R + D+++ D +P + LG ++ Sbjct: 266 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 325 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEFRVR-------AADN 490 + W I + F ++D RL+ E +R AD Sbjct: 326 WILQN--GWSAAIANPQQIVGFDALMDRIDKVLDKPQELARLREEVTIRMFLFDCLRADG 383 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +R+ + +G+ G+ DI++Q+++ + + A Sbjct: 384 RKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 427 Score = 58.0 bits (139), Expect = 8e-06, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480 + + + LG + +H + +H D N++ + L LQ Sbjct: 173 LSQRVIYRNHHFGYTLGYSKSELHAMGEFFWEVLLHPEDARNYQDMRLRQRHHGHNELLQ 232 Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532 R R ++ + IR + + ++ + R IGIA DITEQ + S + Sbjct: 233 RVLRFRDRESNWRSFDIREQALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRML 292 Query: 533 A 533 A Sbjct: 293 A 293 >gi|307826353|ref|ZP_07656557.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307732594|gb|EFO03467.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 1020 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 133/564 (23%), Positives = 253/564 (44%), Gaps = 10/564 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + R + S + + D + + + G + G L Sbjct: 449 RRKLSETDLRIASTAFESQEAMAITDKDQVILRVNQAFVRVTGYSVEEAVGKTPALLKS- 507 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D ++ + S R G Q E R + + + + I +++ G + Y+ Sbjct: 508 GRQDAPFYQAMWKSL--SRDGHWQGEIWNRRKNGEVYPEWLNITAVTDEGGQVTNYVASF 565 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K + I AF D+LT +PNR+ L+RL ++ + + ++++D+D++ Sbjct: 566 SDITERKTAEYEIQHLAFHDSLTQLPNRRLLLERLKHGIE-VERREGKQLALLMLDLDRF 624 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G GD++L + RRI L+ D++ARL G+ F ++L + A A Sbjct: 625 KAVNDSFGHQAGDELLQQVARRITSRLREVDMVARLGGDEFIVLLEDITHPDDAARVAEG 684 Query: 637 MRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ L ++ + SIG + + + +L A+ A+YHAK G F Sbjct: 685 IIADLSKSFQLPQSDDVQIGVSIGISLYPQHAVNPEMLLDYADTALYHAKDNGRGCFAYF 744 Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 +R+ ++ L A++ EL + Y P + + IVG EAL++W P G I Sbjct: 745 SEDLTIAVRERIALEVRLRKAIKQQELRVFYQPQMDIASGRIVGAEALVRWQDPVEGLIP 804 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ IAEE +I I ++L R W + PP+ + +N++ +++ Sbjct: 805 PCRFIPIAEETNLIVEIGEWVLRETCRQGRQWLNMGL-PPLTLAVNVSPHQFRRSDINAL 863 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++ T + +++L +ES +M N +++ +L L G+ L +DDFGT S L+YL Sbjct: 864 VATVLRDTGFPAGQLELEITESGLMENQDKTTNILNSLHAQGVHLAIDDFGTGYSSLTYL 923 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + P D +K + S + + + I +I+ M + ++A+ + + L Sbjct: 924 KHFPLDVLKIDKSFIDDIPHNKDDMEIAATIVAMGHILGFKVLAEGVETLEQLAFLQEQS 983 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 CD Q + PL + + LL+ Sbjct: 984 CDLYQGYLKSHPLPADDFVALLQA 1007 Score = 86.9 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 46/160 (28%), Gaps = 13/160 (8%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 I V + + R + ++W + G Sbjct: 318 ITDVTERKRATASLLESEARFRTMADSAPVLIWIASPDKFFHYFNKGWLEFTGRTMEQEI 377 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G W+ +H D + R E+R+R D ++ W++ P+ + Sbjct: 378 GN--GWIANVHPEDFQRCFNTYVTSFDAR-HEFSMEYRLRRFDGEYRWLLDHGVPLYDEQ 434 Query: 507 GDILRYIGIANDITEQK----------KSLEGILCNAFQD 536 L YIG DIT +K + E A D Sbjct: 435 DTFLGYIGSCIDITRRKLSETDLRIASTAFESQEAMAITD 474 Score = 72.3 bits (176), Expect = 4e-10, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 6/152 (3%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIA 435 I V + + + +R +V+ + + D + I Sbjct: 180 ITALLAVTRDITEHKASETALQEALDRLQKIASRVPGLVFQFQMRPDGSSCFPFASEAIR 239 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 I ++ + +H +D D + + R ++E+RV+ D W+ Sbjct: 240 DIYRVSPEDVRDDASRVYAVLHPDDYDGIVASIQAS-ARRLTPWRHEYRVKFDDGTVRWL 298 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 P ++G +L + G D+TE+K++ Sbjct: 299 FGNSLPQREADGSVL-WHGFITDVTERKRATA 329 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 70/200 (35%), Gaps = 15/200 (7%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 +I + +L + + + + + D + LV + +++ GYF + Sbjct: 22 VILSVLLTEVIVAVMGLLLKGEVPPDYLLTGLVASCFVASLVVAM--------LGYFLEK 73 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHI 458 + + + + V + + + + S+ + + + Sbjct: 74 LTESQLQLYAIIEAEPECVKLVAADGTLLQMNRAGLNM--IEADSLDQVLGQQIPQLMTA 131 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D F T+ G L++E R + WM P+ +S+G I + + D Sbjct: 132 EYQDAFITLTKRVFEGESGNLKFEMRGLK--GTYRWMDTHAVPLRDSHGHITALLAVTRD 189 Query: 519 ITEQKKSLEGILCNAFQDNL 538 ITE K + E L A D L Sbjct: 190 ITEHK-ASETALQEAL-DRL 207 >gi|117925008|ref|YP_865625.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117608764|gb|ABK44219.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 720 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 159/553 (28%), Positives = 262/553 (47%), Gaps = 11/553 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468 + + + D P I G GS+ G + L H DR + + Sbjct: 164 VFENTTEGIVVTDSTACITNVNPSFEAITGYDRGSVLGQNISILQSGRH--DRRFYGKMW 221 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + + G+ Q E R + + + + I + +G Y+G+ D+T K+S E Sbjct: 222 QTLLT--AGKWQGEVWNRRKNGEIYPQWVNISAIRTGDGQTESYVGVFTDLTRIKESEEN 279 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 +L + D LT +PNR F DRL L SA D V+++D+D++K IND +G VG Sbjct: 280 LLYLSGHDALTELPNRLLFHDRLNQTLVESA-DSGSIVAVLIVDLDRFKVINDSMGHEVG 338 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L + R+ + LARL G+ FGI+L + + A A + +A PI + Sbjct: 339 DSLLCEVATRLRAICPAKATLARLGGDEFGIVLPNMTQNRDAALLAQEVLTRVAQPITIS 398 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706 E E V ASIG + S +++NAE AMYHAK G N+ + +R + Sbjct: 399 EVEFAVGASIGMTVYPLDGEKPSVLMRNAESAMYHAKQSGRNNFQFYRSELNTASLARIL 458 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L AV+ E L Y P + L +++G+EALI+W HP+ G +S EF+ +AEE + Sbjct: 459 LESGLRNAVDRQEFLLFYQPQMELATGKLIGMEALIRWQHPEQGMVSPGEFIPLAEETGL 518 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 + + + L+ R W DQ P+ I +N++ + E + + ++ P Sbjct: 519 VIPMGQWALKEACRQSKVWMDQTG-VPLRISVNLSGIQFRLPDFTEMVMRTVGESGLPPH 577 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ES+ MG+ E + L L + G+ L +DDFGT S LSYL P DT+K + S Sbjct: 578 CLELELTESIAMGDVEETLEKLTILSRFGVLLAIDDFGTGFSSLSYLKKFPIDTLKIDQS 637 Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + AI+R+ I +A ++ +IA+ + ++ L + CD IQ PL Sbjct: 638 FVRNCTRDPEDAAIIRAFINLAHSLNLEVIAEGVEHLEQLEFLAQESCDEIQGYFYGRPL 697 Query: 945 GFNSILKLLKERF 957 + + + F Sbjct: 698 SGDKFEMFMLDAF 710 >gi|229587761|ref|YP_002869880.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas fluorescens SBW25] gi|229359627|emb|CAY46469.1| putative sensory box GGDEF/EAL domains protein [Pseudomonas fluorescens SBW25] Length = 662 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 166/654 (25%), Positives = 285/654 (43%), Gaps = 23/654 (3%) Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILI-FIWFIGLWMAITKRLDN----DIIQPALVGGL 375 + I H + Y A ++L+ W + + LDN + Sbjct: 18 VFLVRITDHMLFSYRGARWAGLVYLLVSMTWISLTERLLIEFLDNPSALNHWLQVRGYVW 77 Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTP 432 V + L+ + +I A Q + + ER A + + V D V Sbjct: 78 VALSALVIY-LICARFARANQQQPLKENRERLRQAAAVFDCTREGVLVTDAQGLIVHVNR 136 Query: 433 DIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 I G + + G + H NF + + R G E R + Sbjct: 137 AFMEITGYSREDVMGRQPSLFKSGRHS---SNFYQQMFQSLE-RCGEWSGEIWNRRKSGE 192 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + IR + + G + Y+ + +DI+ K S + A D LT +PNR F DR Sbjct: 193 IYPQWQTIRVIHDDLGQVSHYVAVFSDISAIKDSEHELAHLAHHDPLTDLPNRLLFTDRA 252 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 L + ++++D+D +K IND LG VGD +L + R+ L LAR Sbjct: 253 QQALASAQVHKRG-CALLLLDLDHFKIINDSLGHNVGDQLLKLVGERLKALFGPGVTLAR 311 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F ++ S + A A M +++ P ++ ++ASIG + + + +++ Sbjct: 312 LGGDEFAVLAESCPQVAQAASLAQRMLEAMKQPFLFDGHQLFISASIGISLFPNDALSAE 371 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729 ++L+NA+ A++ AK G + + +RV I +L A+E EL + Y P+ Sbjct: 372 QLLRNADSALFKAKSTGREGYALYTEELTAHAQNRVEIASELRRALEQKELRVYYQPVHD 431 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L ++G+EAL++W HP G + EF+ IAE +I I+ +++++ R + W Q Sbjct: 432 LNGSRLIGVEALVRWQHPARGLVPPGEFIPIAERTGLIADIDAWVMDQACRQMCDWLAQG 491 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 FI IN++S+ EL E + ++ T P+ ++L +ES VM +PE + L Sbjct: 492 APLS-FIAINVSSRLFARRELYEQVAQVLHDTGLDPAFLELEVTESAVMDDPEVALEQLH 550 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 RLR++G+ L +DDFGT S L L +P +K + + G E AI+R +I +AK Sbjct: 551 RLRELGLRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVVIALAK 610 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 ++ + A+ I E + L CD Q P+ I R P+++ Sbjct: 611 SMGMQVHAEGIEQEEQARFLLDQQCDMGQGYWFGKPMPAQEI-DW--SRAPVIR 661 >gi|294497855|ref|YP_003561555.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM B1551] gi|294347792|gb|ADE68121.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus megaterium QM B1551] Length = 814 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 145/583 (24%), Positives = 280/583 (48%), Gaps = 9/583 (1%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATIL 438 I+ V+ + + + + ++ +W D+ + + + ++ I Sbjct: 235 IVQLIGVVHDITESKVITNELKQKEQQFQTIYNNLDAGIWSVDVQSNEMIVCSSGVSNIY 294 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + G W +IH D+ + ++ ++R+ + W+ R Sbjct: 295 GEDAAKFLGNRDLWESFIHPEDKPAVAKGQHQLQKGK--MIRQQYRIYTKTGEMKWVKDR 352 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 P + NG ++R GI DIT +KK ++ + A D++T +PNR+ F L + Sbjct: 353 CIPTLDENGKLMRIDGIVEDITAEKKYMDHVEYLATHDHVTNLPNRRKFERELKNFIRQM 412 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + +L V + ++++K IND LG VGD +L + R+ + + +LAR + Sbjct: 413 KKERDL-LAVFYLGLNRFKHINDTLGHDVGDRLLRRIANRLKKCVTLDVMLARAGEDELA 471 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I +S + + A A+ + I I + + + VTASIG + + + +L NA Sbjct: 472 ICFLSLAHIHECQKLAAALLQEIEKEITIDDFSLCVTASIGISIYPHDGEDAKMLLTNAN 531 Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 LAM AK G + + + + S +++ L A+ E ++ Y P + EI Sbjct: 532 LAMRRAKEVGRSDWQLYSPLMDSETYKSYHLEKGLRNALLQDEFFIEYQPKVHTNSREID 591 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 +EALI+W+HP+WG +S +F+ +AEE +I + ++++ + + + W++Q + + Sbjct: 592 SIEALIRWNHPEWGRVSPEDFIPLAEETHLIIELGDWVIQHVCKQLQQWKNQGLQI-VPV 650 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN++SK LL + E +Q ++ PS I+ +ES ++ E + ++ L+KIG+ Sbjct: 651 SINVSSKHLLKSGFVEHVQQTLAHYNIDPSFIEFEVTESSIIQYEEHVKKVMDELKKIGV 710 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTII 914 + LDDFGT S LS+L F+T+K + + + +T+ K+ AI +SI+ +A + +I Sbjct: 711 TFALDDFGTGFSSLSHLKDFEFNTLKIDKTFIQHATDKGKQQAITKSILYLAHALNMKVI 770 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 A+ + + + L + C +IQ V+ P I + LK+ F Sbjct: 771 AEGVETKEQLAFLQKHECSFIQGYIVSQPAAPQKIAEYLKKPF 813 Score = 71.5 bits (174), Expect = 7e-10, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTILDSFV 472 + W +D+ D+ +P + I GL ++N L +++ + + + Sbjct: 140 ANVGSWYYDVREDKSYWSPQLYNIYGLNPNQHFTPSLKNVLQFVNRCGQKRLEKAVMEAL 199 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 G E+ + + + + + + G+I++ IG+ +DITE K Sbjct: 200 ST-GGSYTIEYTLLRPSGEERTVFEQADALVDEQGNIVQLIGVVHDITESK 249 Score = 39.5 bits (91), Expect = 2.5, Method: Composition-based stats. Identities = 11/137 (8%), Positives = 40/137 (29%), Gaps = 7/137 (5%) Query: 400 IFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 I +R + + + ++ + D + + + G + IH Sbjct: 2 IMKRLDRLNTQLLKEYSEGIFFINCEGDIMFSNEAAFKLTGNEHKE---KSQQLTALIHT 58 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + + + + + + + + I + P+ S + + D Sbjct: 59 SKQQQAQDFFQRALQGEKVQFSTT--INHNTKKELHLDITLIPIIVSE-QVAGVYAVCRD 115 Query: 519 ITEQKKSLEGILCNAFQ 535 +++++ I Sbjct: 116 DSKEQERSNHISKLETH 132 >gi|317152066|ref|YP_004120114.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316942317|gb|ADU61368.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 849 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 158/604 (26%), Positives = 276/604 (45%), Gaps = 18/604 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG-------SGDIVWDW 421 L ++LIV + F V++ + + I ER A+ D +DW Sbjct: 202 TILFVSILLIVAGLEFYVLRQISRSAREKAKIRQQRERLLEALRTGEERYRTIADFAYDW 261 Query: 422 DI----VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 +I + +P I G I DRD + L G Sbjct: 262 EIWLGTEGGVLYCSPACERISGHPPERYFEQPELLREIIVSEDRDAWDKYLLFINNEVGG 321 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 L +FR+ Q W+ + R +S L DIT++K+ E + A D Sbjct: 322 SL--DFRIVTRSGQTRWLCVAGRAVSGIGMKPLGIRCSFRDITDRKEMEEQLRHQALHDP 379 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LT + NR LDR+ + + +N ++ +D+D++K IND LG GD VL+ Sbjct: 380 LTELANRTLCLDRVGQAMRRAGRRENYYFALVFLDLDRFKVINDSLGHRFGDLVLMETAN 439 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ + ++ D ++R G+ F ++L + + +R ++A P E+ TAS Sbjct: 440 RLAQHVRTLDTVSRFGGDEFVLLLDELASPGEAIRIVKRIRDALAKPFIFTGHEVQTTAS 499 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715 G I +S++L+ A +AM+ AK G N + F D++ ++ D+ + Sbjct: 500 FGIVLSPIPDIRASDVLQRANIAMHQAKEAGRNRFKVFTTRMLESAVDQLTMENDMRRGL 559 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E+ E ++ Y PI+ L +I+G EAL +WDHP+ G I +EF+ +AEE I + ++L Sbjct: 560 ESGEFHVQYQPIMDLDGSDIMGFEALARWDHPERGPIPPAEFIPMAEESGTIIKLGEWVL 619 Query: 776 ERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 + WR IF+ +N++SK EL + + + P +KL +E Sbjct: 620 RESLLTLARWRAATPGAQDIFMSVNLSSKQFARMELDKLVIDALRAADLPPEVLKLEITE 679 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892 + +M +P+ + +L RLRKIG+ ++DDFGT S LS L +P DT+K + S ++ Sbjct: 680 TALMEHPDAAINVLKRLRKIGVRFSIDDFGTGYSSLSQLQQLPVDTLKVDRSFISRMKSD 739 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + I+R++I +A ++ ++A+ + + L + C+ +Q + PL L Sbjct: 740 PENMEIVRAVIALAHSLGLDVVAEGVEDAGQLCSLMELKCESVQGFYFHRPLSPTDAEDL 799 Query: 953 LKER 956 L +R Sbjct: 800 LHKR 803 >gi|117925126|ref|YP_865743.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117608882|gb|ABK44337.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 754 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 137/606 (22%), Positives = 266/606 (43%), Gaps = 12/606 (1%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGS 414 + ++L Q + + T L+ + G R + Sbjct: 137 LQAAEQLRRIEEQARQQLEQRVRERTLELTQSNERLSNEVAVRMRAESGLRLIHKVFENT 196 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVG 473 + + D + P I G + G R++ H D + + Sbjct: 197 SEAIILTDPQGMILDINPAFTEITGFSREEALGHNPRSFKSDRH--DATFYTNMWRKIAE 254 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 G Q E R + + + + I + N G++ YIGI +DI+E K + + A Sbjct: 255 E--GFWQGEIWDRRKNGEIYPKRLTINAVRNQAGEVENYIGIFSDISESKATELKLERLA 312 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 + D LT +PNR F DRL + + V ID+D++K++ND LG + GD++L Sbjct: 313 YYDALTQLPNRMLFHDRLEHEFYNAQRHRK-QVAVFFIDLDRFKQVNDTLGHSAGDELLQ 371 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + +R+ ++ D +AR+ G+ F +IL +++ +A A + + + I++ +I Sbjct: 372 HVAQRLEGCVRAADTVARMGGDEFTVILADISDNESVARVARKVLEELQKSISIKGHDIF 431 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDL 711 V ASIG A + + + KNA++AMY AK G + + F S R+ ++ L Sbjct: 432 VGASIGIALYPDNGNDVETLTKNADMAMYRAKESGRGNYKFFSEEMNVSTSQRLSLESQL 491 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 AV + L + Y P + + +VG+EAL++W I +F+ +AEE +I + Sbjct: 492 HHAVNANLLEVYYQPKLNMQSGIMVGMEALVRWPQADGSMIPPIQFIPVAEETGLIVPLG 551 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 ++ + D W + + + +N+++++ L ++ +++ ++ Sbjct: 552 RLVMRQAMLDCARWVRETG-MNLRVAVNLSAREFQSPGLVVEIEQTLAECGLDARHFEVE 610 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +ES++M + E + L ++ ++GI + +DDFGT S LSYL P ++K + S + Sbjct: 611 ITESLMMHDVENAIATLEQISRLGIHIAMDDFGTGYSSLSYLKKFPIHSLKVDRSFVKDI 670 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 I I+ +I+ +AK + ++A+ + + + L + CD Q + PL Sbjct: 671 PDDPNDIEIVAAILSLAKVLNLKVVAEGVETQEQLSFLRQNLCDECQGYSFSKPLSAVDF 730 Query: 950 LKLLKE 955 L + Sbjct: 731 TAFLAD 736 >gi|317130370|ref|YP_004096652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] gi|315475318|gb|ADU31921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] Length = 840 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 153/567 (26%), Positives = 286/567 (50%), Gaps = 11/567 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIR 450 +Q + + ++ + +I+W DI +V + + G + + Sbjct: 271 EQKEANQRLVDNEKQARIIFNNLDEIIWSIDISSRKVIFCSNGFEQLFGYCLDDLIDERQ 330 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W IH D L + + L++E RV+ + W+ I+ P+ + GD + Sbjct: 331 LWQKVIHEEDIKGIPEKLITLSQGNQ--LKFECRVQHTSAEVRWIEIKALPIIDDLGDFI 388 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 R GI DITE+KK + A D+LT +PNR+SF +L ++ + ++ +V Sbjct: 389 RVDGIIRDITEKKKLDAKMHHIAHHDHLTNLPNRRSFDIKLHELIHHAKKTKSI-FSVFY 447 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +DID++K +ND+LG GDD+L ++ R+ ++L+ +AR SG+ F ++L ++ Sbjct: 448 LDIDRFKHVNDMLGHNYGDDLLKEISYRLKQVLQSH-FIARTSGDEFAVLLHDVT-EEEV 505 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 FA + + ++ E E VTASIG A + + +LKNA+ A+ AK G + Sbjct: 506 IVFAHNIVNVMRQAFHISEVESYVTASIGIAFYPKDGENAVTLLKNADTALSFAKIDGKD 565 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + + +++D+ LA+E E YL Y P I + ++++G EALI+W HPK Sbjct: 566 NYKHYIPEMNEDSHNIYFLEKDMRLALEKEEFYLEYQPKIDVKTKKVIGCEALIRWTHPK 625 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S ++F+ IAEE +I I ++++++ + + W + + + INI+++ LL Sbjct: 626 RGIVSPAQFIPIAEESDLICDIGNWVIKKVCKQLKKWHLEGINT-VPVSINISAQHLLKT 684 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 L + + + SPS ++L +E+ ++ + + L+K+G+ L+LDDFG S Sbjct: 685 SLLDTIFTALKANHVSPSLLELEITETSLIQPNQSVFSTIRSLKKLGVKLSLDDFGVGYS 744 Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+++ P DT+K + S ++ + + I+ SII MA + TI+A+ + E + Sbjct: 745 SLTHIRKFPLDTLKIDKSFISKVPTEKDDAVIISSIIEMAHGLGLTILAEGVETEEQLLF 804 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953 L CD+IQ + P+ + + L Sbjct: 805 LEEKNCDHIQGFLFSKPISNDHFKQAL 831 Score = 88.9 bits (219), Expect = 4e-15, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFV 472 + WD+D D++ + + I GL + P +L Y+H +DR + + Sbjct: 164 ANIGSWDYDPHNDKLYWSKQMFRIFGLDEKTNTAPSMEQYLKYVHHDDRLRDIVAIQDAM 223 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ YE R+ D + I+ P+ ++ G++++ IG +DITEQK++ + Sbjct: 224 EKKK-SFNYESRIFRKDGMKRIVKIQGNPIIDNEGNVVKIIGNTHDITEQKEANQR 278 >gi|218531280|ref|YP_002422096.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] gi|218523583|gb|ACK84168.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] Length = 772 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 153/683 (22%), Positives = 288/683 (42%), Gaps = 26/683 (3%) Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + + + L + + T + +L + + A Sbjct: 90 APAMRNLIAEATLTVVCLMSVPSWLLSQTTG-TTYAILVCLLTGILWAGCLTLATVRAAA 148 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 ++ A + + + + ++ +L L + T + L Q Sbjct: 149 MVYVATGAAIV---VIGLLWANQDFEHLMLASLFPLGALTAMRSVDTQAKMFLDNQRQQQ 205 Query: 399 GIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + L + + D +W+ D + LG S ++ G Sbjct: 206 SLTKQSDLIGLLLKDYEEQTSDWLWETDSSLRYTNPSDRFVEALGRPSDAIRG--ATLGS 263 Query: 455 YIHINDRDNFRTI---LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + + R+ A + W I RP+ + G L Sbjct: 264 LLQDEEATGNGAACLQVRACAEARQPFRDIVVPFTRA-GEMRWWSISGRPVYDETGTFLG 322 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y G+ +D+T K + I A D LTG+PNR + L L V+ + Sbjct: 323 YRGVCSDVTATKDAELRIAHLAHHDALTGLPNRAFMSESLHQALRDPDR---ACLAVLSL 379 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K +ND G GD +L S+ R+ + DI+AR G+ F ++ ++ + ++ Sbjct: 380 DLDGFKAVNDRYGHPGGDALLTSVAERLQNEVSGGDIVARFGGDEFVVLNVAFTSPSEVE 439 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 D A + +S++ P+ L +T+ SIG A + T+ E+LKNA+ A+Y AK G Sbjct: 440 DLARRLIESLSTPVPLDNESVTIGVSIGIAFAPTDGRTAEELLKNADAALYRAKTAGRGT 499 Query: 692 VESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F R R + +DL A+ EL L Y P ++ I G EAL++W HP+ Sbjct: 500 FRFFEPEMDRKLQARQRLVQDLRNALTRDELRLDYQPFVKSETGVISGCEALLRWRHPER 559 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS EF+ +AEE +I I ++++++ R+ SW I +N++ + Sbjct: 560 GMISPVEFIPLAEESGLIVPIGMWVIQQACREAASWPSTY-----RISVNVSPVQFRSRD 614 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + + A ++ + +P+R+++ +E+V++ + + + +L ++R +G+ + LDDFGT S Sbjct: 615 LPQVILAALTSSGLAPARLEVEVTEAVLIDDADTALEILRQIRSLGVRVALDDFGTGYSS 674 Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL PFD +K + S + I+++I MA+ + T+ A+ + + K L Sbjct: 675 LSYLRRFPFDKIKIDRSFVQELDTRHDSQVIVQAIRDMAQGLGMTVTAEGVETDDQAKRL 734 Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950 + GC+ +Q + P N + Sbjct: 735 RQTGCEELQGFLYSRPRPANELT 757 >gi|146309464|ref|YP_001189929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] gi|145577665|gb|ABP87197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] Length = 765 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 159/577 (27%), Positives = 274/577 (47%), Gaps = 12/577 (2%) Query: 384 FTVIQHVLATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 F I L + +Q + R + A+ G+ D +W+W + +D++ + ++LGL Sbjct: 170 FFDIGLALDSYGAAQRKALQDSEARYARAMRGANDGLWEWQLEQDQLYLSERWTSMLGLD 229 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 S+ R+W +H +D R +D+ + L +E+R+R D + W+++R Sbjct: 230 RDSLAPTSRSWFSRVHGDDLPGLRQAIDNHLRGLSPTLHHEYRIRRRDGSYLWVLVRGVA 289 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + S G + R G +DI++++ + E + A D LTG+ NR + L L Sbjct: 290 ETCSGG-VRRIAGSQSDISQRRAAQEQLHHAARHDPLTGLANRARLGELLQQALQRQQRP 348 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++ ID+D++K IND LG +GD VLV + R+ L+ D LAR G+ F +L Sbjct: 349 GAREAALLFIDLDRFKLINDSLGHQIGDRVLVEVAERLSHCLRPGDHLARFGGDEFVALL 408 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 A M S+ P+ L E+ + VTASIG A+ + L+ A+LA+ Sbjct: 409 DDLACMGDAERVAQRMLDSLHPPLRLQEQTLAVTASIGIAALQERGH-PLDPLQAADLAL 467 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIV--G 737 Y AK G + + + ++ L A EL LVY PI RL + V G Sbjct: 468 YRAKSAGKAQFARYSSELQQQAQRQLELQNALAQACSCGELRLVYQPICRLDQGQPVLMG 527 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 +EAL++W H IS EF+ EE I A+ ++L + + +W+ A + Sbjct: 528 VEALLRWQH-DGREISPLEFIPCLEESGEILAVGDWVLRQACTQVRAWQ-LAGQTQLRCS 585 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++S+ L + + ++ +T + + L +ES +M + ++ L L +G+ Sbjct: 586 VNLSSRQLQQGDFAARVADVLRETGLPAASLVLEITESQLMQDSAQNLACLRELASLGVQ 645 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L LDDFGT S L YL P +K + S + G+ + +AI R+II + ++ T++A Sbjct: 646 LALDDFGTGYSSLGYLKRFPLHIIKVDKSFIAGTPQDAESLAISRAIIGLGHSLGLTVVA 705 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + + I L R GC Y Q + P + + +L Sbjct: 706 EGVEQQAQIDFLGREGCLYAQGYWFSRPRSPDDLQRL 742 >gi|83312079|ref|YP_422343.1| hypothetical protein amb2980 [Magnetospirillum magneticum AMB-1] gi|82946920|dbj|BAE51784.1| Hypothetical 918 kDa protein Y4LL [Magnetospirillum magneticum AMB-1] Length = 830 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 143/598 (23%), Positives = 271/598 (45%), Gaps = 13/598 (2%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 +I+ L + V+ + + + +G+ ++ D Sbjct: 227 GNILWARLTVTAMREGSDNELRFTVAVVEDVTEKKRLEDHMRLAATVFESTGEGLFVTDE 286 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH-INDRDNFRTILDSFVGYRRGRLQY 481 R + P + G + + G +L H D L G+ Q Sbjct: 287 KRQIIHVNPAFTELTGYPADEVIGRTPKFLASGRHTPEFYDAVFKTLAEC-----GKWQG 341 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E R + + I + N G++ Y+ + +DIT +K+ E + A D LT + Sbjct: 342 EIWNRRKTGEMFAEWLNISVVRNERGELTNYVAVFSDITSRKQDEERLNYQANHDPLTRL 401 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR F +RLT L + + + ++ ID+D +K++ND LG GD +L + R+ Sbjct: 402 PNRTLFQERLTRALTRAHRNQAI-VALLFIDLDFFKQVNDTLGHLAGDILLQQVAERLTS 460 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 ++ D +ARL+G+ F +IL + A A + +A P +L E +++SIG A Sbjct: 461 CVRQGDTVARLAGDEFTVILEEISEPRDGAVVAHKILSLLAEPFDLQGHEARISSSIGVA 520 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSE 719 + S + ++K A+ AMY AKH+G N +++ +R+ ++ L AVE E Sbjct: 521 LYPSDGGDAQTLIKLADAAMYRAKHQGRNACRFHSESINAQAFERLALESALRHAVERRE 580 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y PI +V +EAL++W HP +G I ++F+ +AEE +I + F+L+ Sbjct: 581 FLLHYQPIFDARSGSVVAVEALLRWRHPDFGMIMPNQFLPLAEETGLIMPVGKFVLDEAC 640 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 R +W D + + IN++S+ L EL E + A + + PS ++L ES ++ Sbjct: 641 RQAKAWLDA-GHTGLKVGINLSSRQLRAPELIEDIAAALEGSGLPPSALELDVPESAIID 699 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIA 897 + + + + +G+ + +D FG+ S ++L +P +T+K + + + + Sbjct: 700 KGQDVDAIFTQFKTLGVRMAIDAFGSGYSSFAFLRKLPSNTLKIDQGFVRDAASGAEESE 759 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ +I+ +A+ + +++A I E + L + CD +Q A P+ + + L+ Sbjct: 760 IVTAIVAVARGLHLSVVAPGIETEEQLAHLVKYDCDMVQGFLFAHPMPAEELTEFLRA 817 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 3/151 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 I++ + + + R +G V D + P T++G + Sbjct: 124 RAIRYAIGRSAADAALRTSESRFRALFDNAGTGVILSDAAGAYIHCNPAFCTMVGYSDAE 183 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS- 503 + + + D + + D + R + R D W + + M Sbjct: 184 L--QKMTYRDITYPEDMNAHTQMRDDMMAGRTDSYELTKRYIRRDGNILWARLTVTAMRE 241 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534 S+ ++ + + D+TE+K+ + + A Sbjct: 242 GSDNELRFTVAVVEDVTEKKRLEDHMRLAAT 272 >gi|71907211|ref|YP_284798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846832|gb|AAZ46328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 1093 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 150/605 (24%), Positives = 272/605 (44%), Gaps = 51/605 (8%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + Q + + ++ D ++ P +L S + G Sbjct: 481 SRKVAEDSLRESVMLQRAILNSAKLMILSTDSEGRVISCNPATEQMLAYPSAELLGRTPV 540 Query: 452 WLPYIHINDRDNFRTI-----------LDSFVGY-RRGRLQY-EFRVRAADNQFHWMIIR 498 ++ ++ R + +D + R G + ++ + D + + + Sbjct: 541 ECFFLREEIQERRRALSSETGFDPASDIDVLLARVRLGSVDQGQWTFQRKDGEKFIVELS 600 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE------------------------------- 527 I + + ++ +A+DITE+K++ + Sbjct: 601 ISALHPEDKKAQGFLFVASDITERKRAEDALLRSRDELELRVKERTSELESEVLERRRIE 660 Query: 528 -GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + A D LTG+ NR RL +D +A DD + ++ ID+D++K IND LG Sbjct: 661 SKLRYLAHHDALTGLANRTLLQQRLGEAMDNAAQDD-TKVAILFIDLDRFKTINDSLGHH 719 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 +GD +L ++ R+ E L+ D +ARL G+ F IIL + N A + ++ PI Sbjct: 720 IGDTLLKNVASRLTETLRSNDTIARLGGDEFMIILPLKANEALAGKLASKILDALRPPIR 779 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDR 704 + E+ VT SIG + + +T + +++NA+ AMY AK G N F + Sbjct: 780 IDGHELFVTPSIGICFYPNDGVTVNALMRNADTAMYQAKANGRNTYCYFTAEMNAAADNY 839 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 I+ DL AV+ +E + Y P+I L I EAL++W HP G + ++F+ +AEE Sbjct: 840 FQIESDLRRAVDRNEFEVFYQPVIDLKTHRITSYEALVRWRHPTKGLVGPAQFITVAEES 899 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I I +L + + SW D+ PI + +N++ D L EG+ ++ + Sbjct: 900 GLIGEIGTIVLRQACSQLRSWIDEGFTSPI-LALNLSPIQFNDPNLTEGICRILRDYDLT 958 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P RI+L +E+V+M + E + L L G L++DDFGT S L+YL P DT+K + Sbjct: 959 PDRIELEITETVIMQDGELALGTLQNLSSRGFRLSIDDFGTGYSSLAYLKRFPVDTLKID 1018 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S +T E AI+ +I+ +A ++ ++IA+ + + L+ + C++ Q ++A Sbjct: 1019 RSFITDMTANENDRAIVTAIMALANSLHLSVIAEGVETKEQYDLLSALNCNFAQGYYMAK 1078 Query: 943 PLGFN 947 P+ Sbjct: 1079 PMPAE 1083 Score = 53.0 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 4/136 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 +I + + + + + + + + I+G AS + Sbjct: 100 IINDISERKQAERNLHETVQELQSIFNNASVGIVFTNRRT-VLRCNRRFEEIVGYASDEL 158 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 HG L + + R + + R D W + + + + Sbjct: 159 HGMPTANLYASAESHEELGRQSSPLLSAGKA--FSATKQFRRKDGHLIWCQVFAKAI-DP 215 Query: 506 NGDILRYIGIANDITE 521 N + IA D+TE Sbjct: 216 NDPSRGIVWIAADVTE 231 Score = 50.3 bits (119), Expect = 0.002, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 5/152 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + V + + + S + R V + G + Sbjct: 225 IAADVTEAVSTREALEKSSREMEALMANSSVGIVVTH-DRKIVRYNQRFGKLFGFPGENG 283 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G L + R + + Q E +R D W+ + +++ Sbjct: 284 IGMDTAGLYRSAEEHTELNRRAAPALFQAK--PFQTELYMRRQDGSDIWVNLIGY-VADP 340 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + IA D T K++ E L A+ D Sbjct: 341 TDPSMGVFWIAEDRTAFKQAEEE-LKKAYFDQ 371 Score = 48.8 bits (115), Expect = 0.005, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 48/176 (27%), Gaps = 15/176 (8%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 + +DI + +G + + A + + Q L + Sbjct: 324 QDGSDIWVNLIGYVADPTDPSMGVFWIAEDRTAFKQAEEELKKAYFDQRLIFDNCVAGIA 383 Query: 420 DWDIVRDRVT--TTPDIATILGLASGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGY 474 VR+RV + G G + G + H +L Sbjct: 384 ---FVRNRVFQQCNRRFEELYGYGPGELTGKPTRVTYFSDKAHAEIGTTAYEML-----G 435 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 R E R + WM I R + + I DIT +K + + + Sbjct: 436 RGETFVSEVVHRRQNGDPIWMRITGRAI-DPANPNDGSIWNYEDITSRKVAEDSLR 490 Score = 48.0 bits (113), Expect = 0.009, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 7/121 (5%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FRTILD 469 + + + + + + + I G + + R +D + Sbjct: 1 MNNAPVGIL-YTKNGEILRYNAKFSEIFGFDTEIIGKSARQLC----PSDAAYEALGEVA 55 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + E ++R D W + + I I NDI+E+K++ + Sbjct: 56 GPILSAGKPFHQEIQLRHHDGHTFWADAVAY-LFDPRHPAEGTIWIINDISERKQAERNL 114 Query: 530 L 530 Sbjct: 115 H 115 >gi|157376476|ref|YP_001475076.1| signal transduction protein [Shewanella sediminis HAW-EB3] gi|157318850|gb|ABV37948.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein [Shewanella sediminis HAW-EB3] Length = 1055 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 150/578 (25%), Positives = 269/578 (46%), Gaps = 14/578 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + +A Q + E + S + + D + P I G + Sbjct: 475 LGLFANRVALELQRQSTHKEMEMAASVFKESAEAIVICDSEDKILRVNPAFYKITGYSQI 534 Query: 444 SMHGPIRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G L DR +++L + Q E + + + P Sbjct: 535 EVVGQSPQLLQS----DRP-IQSMLHNREAALKKNDIWQCEVSGYRKNGEHFLSWQTVIP 589 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + NGD + I I +DITE+K E I A D+LT +PNR +F ++ T L+ + Sbjct: 590 VKDENGDTQQIIYIFSDITERKLFEEHIYNLAHHDSLTQLPNRVAFQLQMNTALERAKRS 649 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + VM ID+D +K IND G VGD +L + R L+ D+++R G+ F ++L Sbjct: 650 -KTQMAVMFIDLDHFKMINDTSGHPVGDLLLQQVAERFKRALRKEDVISRFGGDEFTVLL 708 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A + P L E+ ++ASIG + + + ++ NA+ AM Sbjct: 709 SNTRTDNATTVVARKLLACFYEPFKLPSSEVVISASIGIGVFPDNGDSVDSLMMNADSAM 768 Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK +G N + + ++ + +R+ ++ DL A+E E L Y P + I+G E Sbjct: 769 YRAKEKGRNCFQFYTKEMNQYAQERLELELDLRKALERDEFVLHYQPQFDP-NGRIIGCE 827 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HP G +S EF+ +AE +I I ++++ W Q P + I +N Sbjct: 828 ALIRWQHPDKGLLSPGEFINMAEITGLIVPIGKWVIDTACMQHKMWLSQ-GYPALNISVN 886 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ + L ++L E ++ I+ + +PS ++L +ES++M N E + L + +GI ++ Sbjct: 887 LSGRQFLHHDLLETVKNAITTSGITPSCLELELTESIMMVNVEETIRTLNAISSLGIHMS 946 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S +S L P + +K + S + G ++ +AI++SII MA + T+IA+ Sbjct: 947 IDDFGTGYSSMSCLKRFPVNKLKIDQSFVRGLPQDKEDVAIVKSIIVMAHALNLTVIAEG 1006 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++ L C+ Q + + P+ I + L+ Sbjct: 1007 VETLEQLEFLKSSRCEEFQGYYFSRPILAADIEQYLQA 1044 >gi|311692959|gb|ADP95832.1| sensory box/FOG: EAL domain/GGDEF domain containing protein [marine bacterium HP15] Length = 1162 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 149/584 (25%), Positives = 275/584 (47%), Gaps = 20/584 (3%) Query: 390 VLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRD---RVTTTPDIATILGLASG 443 V A E+Q + V S + V + V P + I G S Sbjct: 583 VFAIAKDITKRVRTEEQQRIMQRSVEASSNAVVITNARDPGFPVVYVNPAFSQITGFGSE 642 Query: 444 SMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G +L +D + + + + R D W + + P Sbjct: 643 EVEGQSLGFLIGEGSEDDDIERIKVAVREHRS-----VSVTMRSYRKDGAPFWYQLFLSP 697 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + G++ ++ + NDI+E+K+ E + A D LTG+ NR F DRL +L+ Sbjct: 698 VRDDEGEVTHFVAVINDISEKKEQDEEMAYQATHDLLTGLANRSLFNDRLKHDFELAKRH 757 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 V+ ID+D++K IND LG VGD +LVS+ R+ L++ D LAR G+ F ++L Sbjct: 758 SQ-SMAVLFIDLDEFKPINDTLGHRVGDKLLVSVAERLNSLIRPSDTLARFGGDEFVLLL 816 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + + +A P + E+ ++ASIG A+ + S ++L+ A++AM Sbjct: 817 PDLEETGLAEEIAERILQELAKPHQIDNNELHISASIGIATNSHSSRFPEKLLQRADMAM 876 Query: 682 YHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK +G + E + S RV ++ DL A++ +L L Y P++ D IV LE Sbjct: 877 YKAKQQGRDTYEIYSADLDEALSTRVTLRNDLQEAIKGDQLRLHYQPLVN-ADGSIVSLE 935 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W HP+ G+IS ++F+ IAEE I + ++ + D + ++ + +N Sbjct: 936 ALVRWQHPQKGSISPADFIPIAEETGQIVPLGKWVTRKACEDALILIERGLRMGC-MAVN 994 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ ++ ++ +T P ++L +E ++M + ++ +L LR +G+ Sbjct: 995 LSPMQFHRPNFLNVLRQILEETGLPPEYLELELTEGILMKDTGGAKNILNDLRGMGVKTA 1054 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S YL +P D +K + S + T EK A+ + +I +A+ + ++A+ Sbjct: 1055 IDDFGTGFSSFGYLRELPVDKIKIDRSFVEDVTSCEKDAAVCKGVITLARELGMRVVAEG 1114 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + E + L + GC Q + A P+ + ++ ++E ++ Sbjct: 1115 VETEEQYRYLAKHGCTGFQGYYFAKPMALDELIVWVEENAGGLR 1158 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 9/186 (4%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 I + +DN + GL+ LI + H+ + + +R Sbjct: 423 LIARALPRFDAIDNQLPVAIFFFGLMFTHQLILSRSLSHIRHEQSKTLAL--SEQRFRSL 480 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN--FRTIL 468 + D V+ D P LG+ + + G R++ I+ + + Sbjct: 481 YDHNPDAVFSLDADGRYRDINPATKHSLGVPNCELRG--RHFTERINKETVPEGDLKEVF 538 Query: 469 DSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 ++ RG + +F + R + ++ + P+ + I IA DIT++ ++ Sbjct: 539 RAYTEATRGYPRTDFSMSLRTSGHEVRHFDVTFLPIVIQD-RIDGVFAIAKDITKRVRTE 597 Query: 527 EGILCN 532 E Sbjct: 598 EQQRIM 603 >gi|226941282|ref|YP_002796356.1| hypothetical protein LHK_02365 [Laribacter hongkongensis HLHK9] gi|226716209|gb|ACO75347.1| Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Laribacter hongkongensis HLHK9] Length = 1092 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 148/576 (25%), Positives = 269/576 (46%), Gaps = 17/576 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +Q V + + + + + V+ D + P I G A+G Sbjct: 521 GSVQDVTSLRRAERELMLSAQ----VFEHGSEAVFITDASHRILRVNPAFEAITGYAAGE 576 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G ++ + + + + GR Q E R + ++ + + + Sbjct: 577 VLGLTPDFRCVSSPGG-TSISQRWE--LAEQTGRWQGEIVCRRRSGEHYYEWSALSVVRH 633 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +NG +L +IG +DI+ K + L A D LTG+PNR DRL +L+ + Sbjct: 634 ANGSVLYFIGQFSDISAVKAAEARALRLACFDPLTGLPNRSLLFDRLQEVLNREPHNG-- 691 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 V+ D+D++K IND LG +GD VL + RR+ ++ D + R G+ F ++L Sbjct: 692 --AVLFCDLDRFKNINDSLGHTLGDAVLKEVARRLVARVRPGDTVCRYGGDEFVLVLPGL 749 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ + + A + ++ PI L ++ VT S+G A + +L++A+ A+YHA Sbjct: 750 SDCVVLEQLAEQLLADVSSPILLDGLDLRVTPSLGVAVFPRDGNDCDALLRHADAALYHA 809 Query: 685 KHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG N F S+ + I+ L A+E E L Y P + + +VG+EAL+ Sbjct: 810 KSRGRNTYRFFTREIDDRVSEYLHIEHGLRSALERGEFELHYQPQVDMAFGRVVGVEALL 869 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G IS F+ IAEE +I I ++++ R + WR P+ + +N++ Sbjct: 870 RWKHPEQGMISPVRFVPIAEETGLIVPIGMWVIREACRQAMLWRRAGLR-PMTMAVNLSG 928 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + + E + ++ + P +++ +ESV+M + + + +L LR G+++ +DD Sbjct: 929 RQF-SRSVIEAIDEALADSGLDPRWLQVEVTESVIMEDTQEAYTVLEALRARGLTVAVDD 987 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL P D +K + S + E I+ +II MA N+ ++A+ + Sbjct: 988 FGTGYSSLAYLKRFPIDKLKIDRSFIRDIDLDEDNPVIVDAIIGMAHNLRIKVLAEGVET 1047 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L + GCD +Q V+ P ++ + + ER Sbjct: 1048 RAQWDYLRQQGCDEVQGYLVSRPQPAAALGQWMLER 1083 Score = 95.8 bits (237), Expect = 4e-17, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 2/150 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + R SGD+ +D+D+ R+ P +LGL Sbjct: 145 VVTFVDITRERQRQESLQRMEARWQALFETSGDVAYDFDVATRRLELAPAWMQMLGLGR- 203 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502 ++WL + RD+ L + + E+ + + + R R Sbjct: 204 MPDDHYQDWLERVDPQVRDDVEAALCAHLQGETADYSVEYPLLHESGDWLHVFERGRVYQ 263 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532 +++G LR G+ D++ Q + E Sbjct: 264 RDADGKPLRMHGVIIDLSRQLHAEEAQRRL 293 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 7/144 (4%) Query: 394 GYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 S+ + ++ ++ L V S D + D +P + +L + + + G Sbjct: 278 IDLSRQLHAEEAQRRLEGIVAASSDAMAFIDTEGLVGFASPALCHLLSIGTQEVRGRQLE 337 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L + N R+ ++ + R L+ + + + P N+ G ++ Sbjct: 338 ELLAAYANRRE-LMQGIEGALAGRN--LRMQTWLTLPGGGVRCLESSFDPYRNTEGQVVG 394 Query: 512 YIGIANDITE--QKKSLEGILCNA 533 + + D+T+ +K L A Sbjct: 395 AVCVLRDMTDNARKTLLFEQAERA 418 Score = 40.3 bits (93), Expect = 1.6, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 37/146 (25%), Gaps = 20/146 (13%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-----HGPIRNWLPYIHI- 458 E A+ + V V P+ I+ + S + G Sbjct: 32 EYYRTALAHLNEGVLFVSPSGCMVPGNPEAVRIIAVPSAELSHVTREGEWETLTENGEPL 91 Query: 459 --NDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSN-SNGDILRYIG 514 DR R + +R + W+ + P+ + + + Sbjct: 92 AMADRPGARACFA-----GETVERQVVGMRRPGAAEVQWLRMNAAPVYQPEQQEPVGAVV 146 Query: 515 IANDITEQKKSLE-----GILCNAFQ 535 DIT +++ E A Sbjct: 147 TFVDITRERQRQESLQRMEARWQALF 172 >gi|254417659|ref|ZP_05031392.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196175551|gb|EDX70582.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 776 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 157/597 (26%), Positives = 275/597 (46%), Gaps = 38/597 (6%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGS 444 V + + Q + + + + ++ ++ P +A + G + Sbjct: 171 VARDITERKQAEQALKQAEAKYRSIFENALEGIFQSTADGHYISANPALARLYGYSSPDE 230 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + + ++++ R + +E +V D W+ R + + Sbjct: 231 LMVRLTDIEHQLYVD--PQRRAEFSRLLQENDAVADFESQVYRKDGSVIWIAENARAVRD 288 Query: 505 S-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G++L Y G DITE K + + + AF D LTG+PNR F+DRL+ ++ + Sbjct: 289 MMTGELLYYEGTVEDITEHKLAKDQLQTRAFYDTLTGLPNRALFMDRLSHTVERAKRHPT 348 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R ++ +D+D++K +ND LG VGD +L+ + RR+ L+ D +ARL G+ F I+L Sbjct: 349 YRFALLFLDLDRFKVVNDSLGHLVGDQLLIGIARRLESCLRTEDTVARLGGDEFTILLED 408 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS--------SKITSSEMLK 675 + A +++ +A P NL E+ AS+G + ++L+ Sbjct: 409 IEDIHHATRVAERIQQELAAPFNLDGHEVFTGASVGIVLSREIRKEGDITNYDCPEDLLR 468 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A+ A+Y AK G + E F + + ++ +L AVEN E + Y PI+ L Sbjct: 469 DADTALYRAKALGRSRYEIFDLTMHQNALSVLQLETELRRAVENQEFEIYYQPIVSLSTH 528 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD------ 787 +I G EAL++W HP G + EF+ +AEE +I + +ML + R + W D Sbjct: 529 QIAGFEALLRWHHPSRGLVYPGEFIPMAEETGLIIPMGWWMLRQACRQLELWHDTVQESE 588 Query: 788 --QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 Q + I +N++SK L EL E + ++ +T PS +KL +ES ++ +PE + Sbjct: 589 LNQELAHQLTIYVNLSSKQFLQPELLEHLDKILHETHLHPSHLKLEITESCLLADPEIAE 648 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--------- 896 L LR I L +DDFGT S LSYL P DT+K + SL++ + Sbjct: 649 ERLKELRDRQIGLCIDDFGTGYSSLSYLHRFPIDTIKIDQSLISNISIDVQGHCEAGMIN 708 Query: 897 -------AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 I+R+II +A ++ +IA+ + + + +L + CDY Q +PL Sbjct: 709 RTKGLPLQIVRTIIMLADSLGMKVIAEGVETKEQLTQLRLLDCDYAQGYLFQAPLDA 765 Score = 39.9 bits (92), Expect = 2.3, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 14/160 (8%) Query: 378 IVILIGFTVIQH--VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 +V LI Q + + S D ++ D + P Sbjct: 39 LVNLISTVAAQLGVAIERKQAEVALRSSEAELRALFAAMTDSIFVLDSQGCFLKIAPTNP 98 Query: 436 --TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 +L + G + + D F T + + RL E+ + D + Sbjct: 99 DPRLLPENANEFVGKTLH--QFFAPTQADQFLTYIQEAIAT-SSRLNIEYSLTVRD-REV 154 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 W I P + + +A DITE+K++ E L A Sbjct: 155 WFAATISPTLEDS-----VVWVARDITERKQA-EQALKQA 188 >gi|313681964|ref|YP_004059702.1| diguanylate cyclase/phosphodiesterase with pas/pac and chase sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313154824|gb|ADR33502.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 1172 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 149/631 (23%), Positives = 272/631 (43%), Gaps = 14/631 (2%) Query: 330 GMKGYERAVLLIPAWILI-FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV-- 386 + A A + + + N P+ L + + I F + Sbjct: 543 WHERAMTAGWKASAALPFHLFGEVVGAFTVYSYKRNAF-DPSSQELLKEMTMDISFAMEN 601 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 H + + + W+ ++ + VT T + A I + Sbjct: 602 FDHETNRALSEVRLHQTEQLLEEMSAIAHIGGWEINLKTNAVTWTKEAAQIFDMDPNDTI 661 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + L H + +T LD + E + W+ + P+ N Sbjct: 662 -TLETGLSVFHGEWHEKVKTALDQAIYQATSS-DLELYIVTLKGNEKWIRVISTPLV-RN 718 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G+++ G DIT QK + E + A D LTG+PNR DR+ + ++ ++ Sbjct: 719 GEVIDIHGSVQDITVQKTTEEKVHWLAHFDPLTGLPNRTLLNDRVDYAIHIA-ENNQSSL 777 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ +D+D +K IND LG VGD++LV + RI +L D L+R G+ F I+L S + Sbjct: 778 ALLYVDLDHFKYINDTLGHHVGDEMLVQVASRILSVLNEADTLSRQGGDEFMILLPS-AD 836 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 S A A + + ++ P L +++VT SIG A + +E+ + A+ AMY AKH Sbjct: 837 SDHAAHVAEKLVEYVSQPYQLQNHDLSVTLSIGIALYPIDGTNLTELSQAADAAMYRAKH 896 Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N F + ++ L A+ +++ L Y P + + ++++G EAL++W Sbjct: 897 DGRNCYRFFAPEIQERSTRNLELENALRSALVRNQMELYYQPQLSIETQQLIGAEALLRW 956 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP G IS SEF+ IAEE I AI ++L + + W D+ P + +N+++ Sbjct: 957 THPTLGAISPSEFIPIAEESGQIIAIGEWVLRQALGQLKLWIDEGL-EPFIMAVNLSAIQ 1015 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 D L + ++ + P ++L +E + NP ++ ++ L GI +++DDFG Sbjct: 1016 FRDPNLVSQIVGILDELHLPPQYLELELTERIASENPLQAIDIMNTLHDHGIRMSIDDFG 1075 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL +K + S + + I+ +I+ MA ++ IA+ + Sbjct: 1076 TGYSSLNYLKKFRVYKLKIDQSFIHDIADNAEDQTIVNTIVNMAHSLNMITIAEGVETAE 1135 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L + GC +Q + + P+ + + Sbjct: 1136 QLDLLRQNGCKEVQGYYFSKPIPAETFKTFV 1166 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 12/193 (6%) Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL----------ATGYFSQGIF 401 + +I I L+G+ QH + I Sbjct: 248 TLNIAPANGWHTSWVILALQGTLGFFISFLMGYIAKQHFELRNHRRILEKRVQERTSEIL 307 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + D++W + + P G + G ++ + Sbjct: 308 ETKNHLHTLLDTIPDLIWLKNSNGIYLLCNPPFERFFGAKEEEIVGKSDY--DFVDKDLA 365 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 D FR + + E+ D + PM + G++L +GIA DITE Sbjct: 366 DFFRQKDRIVMQSNMPAINEEWVTFRDDGHRALLETVKTPMMDEKGNLLGVLGIARDITE 425 Query: 522 QKKSLEGILCNAF 534 + I + Sbjct: 426 RHNHEVRIEQLSL 438 >gi|326790142|ref|YP_004307963.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium lentocellum DSM 5427] gi|326540906|gb|ADZ82765.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium lentocellum DSM 5427] Length = 949 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 155/564 (27%), Positives = 271/564 (48%), Gaps = 11/564 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + +R + +++W++++ T ++G +S ++ + Sbjct: 390 KEALLISEKRYKTTLNAIEEVIWEYNVKTKTFFATEKWEELVGCSSNNIK-IFNVIKDTL 448 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + + F +L + R E ++ + W++ + + + NG + + IGI Sbjct: 449 EPHHIEVFMLVLKGCIEGRNDSFSQELYMKN---EHRWLLCKGHVVRSENGKLDKLIGIL 505 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + E + AF D LTG N+Q+F++ L T L S + ++ ID+D + Sbjct: 506 TDITDNKANEERVRKLAFFDVLTGCLNKQTFMESLETWL--SPGEAIKDAALLFIDLDDF 563 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 KKIND LG +GD +L + + + ++ ++R G+ F I S ++ +I + + Sbjct: 564 KKINDTLGHEMGDKLLNYVAKVLRHIIPQDSFISRFGGDEFVIFKTSVSDLGEIQEMVYS 623 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + PI + ++I +T SIG A + + +LKNA+ AMY AK G N + Sbjct: 624 ILNIFQDPIRIDGKDIHITCSIGIALYPLDGTSGDILLKNADTAMYKAKDNGKNSYSFYA 683 Query: 697 VSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 +S + + L A+ + LYL Y PII L + V EAL++ + G IS Sbjct: 684 PDMSKSLDRKLLVEGALREAIGKNTLYLQYQPIIELKTGKTVAAEALLRLKDDELGFISP 743 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ IAEE +I +++E R++ + + I IN++S + D + + Sbjct: 744 GEFIPIAEETGLIIPTGDWVIENALRELS-YYRLVGYESLSITINVSSLQMKDRNFIDKL 802 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ P IKL +ESV M N E+S L ++K+GI L LDDFGT S L+YL Sbjct: 803 KLMVQNAKIPPEFIKLEVTESVFMENVEKSINLFREIKKMGIKLALDDFGTGYSSLNYLR 862 Query: 875 YIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 IP D +K + S + T R I+ SII MA ++ ++A+ + E + L GC Sbjct: 863 SIPLDILKIDKSFIDEITTSRVLSEIVDSIIGMAHTLDILVVAEGVESEEQLSILKEKGC 922 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 D+IQ + PL N + + L+E Sbjct: 923 DFIQGYFFSKPLMPNQLEERLQEE 946 >gi|217975287|ref|YP_002360038.1| PAS/PAC and Chase sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217500422|gb|ACK48615.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS223] Length = 1215 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 161/607 (26%), Positives = 280/607 (46%), Gaps = 22/607 (3%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 + + A+ L+ G +I ++ + + + SG+ + Sbjct: 619 KHYVHKNGQLVAVRLNGALVTGADGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGI 678 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP------YIHINDRDNFRTILDSFV 472 D V + I G + + G +L I R L+ Sbjct: 679 TIMDANDIIVDVNSAFSQITGYSREEIIGKNCRFLEAERTDKGIDPQ----VRAALEQ-- 732 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G Q E R + + + + G + YIG DI+E+K S E I Sbjct: 733 ---TGFWQGEVWDRHKHGYDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFL 789 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D+LT +PNR S RL ++ A + + VM ID+D +K IND LG VGD +L Sbjct: 790 AHHDSLTLLPNRLSLQSRLE-VVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLL 848 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + + RR+ ++ D +ARL G+ F + L S+ N ++A A A+R ++ + + + Sbjct: 849 LEVARRLKNIVGDTDTVARLGGDEFVVAL-SDTNHDEVASLAEALRSGLSQTYIINNQAL 907 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710 + SIG + + + + ++KNA++AMY AK G N+ + F + ++R I+ Sbjct: 908 HSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAAMNTLITERQQIETG 967 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L + N EL L Y P I + ++V +EAL++W HP++G ++ F+ IAEE+ MI I Sbjct: 968 LRQVLANDELRLHYQPQIDIRTGQVVSVEALVRWQHPEFGMVAPDRFIPIAEEIDMIIPI 1027 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++LE + +WR + + +N+++ L + + + ++ K ++L Sbjct: 1028 GQWVLETAMAQLAAWRAAGATE-LRMAVNLSAHQLRKDSIVADITNVLLKHKLGKGALEL 1086 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ESV M PE++ LL LR+ GI L +DDFGT S LSYL +P D +K + S + Sbjct: 1087 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1146 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 AI + I M+ + T++A+ + E + L+ MGCD +Q + + PL Sbjct: 1147 IESDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGFYFSKPLAAEE 1206 Query: 949 ILKLLKE 955 + ++ Sbjct: 1207 CFRFIQR 1213 Score = 56.1 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 5/207 (2%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 +H + AVL+ + L + + ++ ++ + V + Sbjct: 466 WHIVIYQSYAVLMGDTFSLSLLMLLLAFITCAVVGGMTLVSSGERQRIAEKVTEKTMALS 525 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + F + +R + V V P + G + + Sbjct: 526 KEIARRQAFQATLVQSEQRYRNLFDKAPVGHVLKRLDDGQFVAINPAFEAMTGYSLDEL- 584 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + W + T + R Y+ + Q + + ++ ++ Sbjct: 585 NQLDPW--DLTPKRYQLSETEQLERLKQTRRYGPYQKHYVHKNGQLVAVRLNGALVTGAD 642 Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533 G+ L + I DITEQ++++ + A Sbjct: 643 GEQL-ILFIVEDITEQERTVARVNLLA 668 >gi|66047869|ref|YP_237710.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63258576|gb|AAY39672.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 828 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 154/561 (27%), Positives = 265/561 (47%), Gaps = 14/561 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 E+ LA + + V + + I G + G R Sbjct: 254 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGKTPRLLAS 313 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D + + G Q E R + + + + I + N + + ++ Sbjct: 314 GQH--DSAFYAAMWHQLAAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVA 369 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI+ K++ + A D LTG+PNR F RL L S +L V+ +D+D Sbjct: 370 VFADISSLKQAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 428 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG VGD +L + R+ E L+ D +ARL G+ F ++L + A Sbjct: 429 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQTSDAQAIA 488 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P E E+ ++ SIG + + + ++KNA+ AMY +K +G N VES Sbjct: 489 NKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 548 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + S+R+ ++++L A+E ++L L Y P I L+ + G EALI+W+HP +G + Sbjct: 549 YTCDLSDQASERIALEQELRRALERNQLTLAYQPKIDLLTHTMAGAEALIRWNHPTFGEV 608 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AEE MI I ++LE+ R + WR P + +N+A L L E Sbjct: 609 PPEHFIPLAEENGMILQIGDWVLEQACRQMGIWRK-TCQPFGPLSVNLAGAQLRQTNLLE 667 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ L++ P ++L +E+ +M + + +L +L+ +G+ L +DDFGT S LSY Sbjct: 668 RIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSY 727 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P D +K + S + G E AI+R+II + ++++ T+IA+ + + LT Sbjct: 728 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSE 787 Query: 931 GCDYIQDSHVASPLGFNSILK 951 GC+ IQ ++ PL Sbjct: 788 GCEQIQGYIISLPLDAEEFRA 808 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 47/155 (30%), Gaps = 12/155 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 +++ + Q + E+ + A S D + + G + Sbjct: 121 LVIVRDITQLKLARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRQTGYSE 180 Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + ++ D +++ + + R+R + + +P Sbjct: 181 KYCLDHSTFDLGIWV---DLSERSKLIERMKKHGFVK-DMRVRIRNNNGDIRLCELSSQP 236 Query: 502 --MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++ + + I DITE ++ E + A Sbjct: 237 LIIAGED----CLLTITRDITESRQMQEKLHLAAT 267 Score = 40.3 bits (93), Expect = 1.5, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 34/147 (23%), Gaps = 15/147 (10%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + D + + + G+ + G L Sbjct: 10 REASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANESFVERTGIPLDEVIGKTPTELNL 69 Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 L E R + + ++ +P + I + Sbjct: 70 WAVPGIGPKVLLQL-----QTGDIHNLEIPFRRKNGETFSGLMSAQPF--EHSPIPAVLV 122 Query: 515 IANDITEQK------KSLEGILCNAFQ 535 I DIT+ K + E AF Sbjct: 123 IVRDITQLKLARQQLQLSEEKFAKAFH 149 >gi|95930949|ref|ZP_01313678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95132958|gb|EAT14628.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 927 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 151/552 (27%), Positives = 262/552 (47%), Gaps = 10/552 (1%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R A+ S + + V D G + + +I R+ Sbjct: 379 RLLQAIDQSPICILMATVDGTPVYVNQDFTRRKGFSLEECKNRLNPINIFI----RERVN 434 Query: 466 TILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + ++ E + R D + +W I I P + N ++ I DITE+K+ Sbjct: 435 ALGNNDNKYTSTDPWTEERQARTKDGKMYWERISIAPAYDLNQKCSHFVFIGEDITEEKE 494 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + A DNLTG+ NR DRL ++ + +L VM++D+D++K IND LG Sbjct: 495 NALHFEYLATHDNLTGLANRLLLHDRLDQLVLKAKRSHSLVF-VMLLDLDRFKVINDSLG 553 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD +L + R+ + ++ D +ARL G+ F ++ ++ A + + ++ P Sbjct: 554 HDCGDRLLQLVAERLLDAVRESDTVARLGGDEFVVVFQETDSLADALHVAELILQKLSNP 613 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSD 703 NL R++ VTAS G + + I+S E+L++A++AMY AK + V + Sbjct: 614 FNLDGRQLLVTASAGISYYPDHGISSLELLRHADVAMYKAKETQSDICVFEPSMDQHLLQ 673 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + ++ DL A+ +EL + Y P + E++VGLEAL++W P G IS F+ +AE+ Sbjct: 674 SMELEADLRQAITRNELQVYYQPKVDASSEKVVGLEALLRWFSPDRGMISPGVFIPLAEQ 733 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 MI I L+++E + R + W DQ + + +N+++K +L E + + + Sbjct: 734 NGMILDIGLWVIEEVCRQLRQWCDQGYSV-VPVAVNLSAKQFQSLDLPEQVSTIFDRYQI 792 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 S + +ES++M NP + ++ L+K+GI L +DDFGT S L+YL +P D +K Sbjct: 793 DSSWFEFELTESMIMQNPVSAIRIMEDLKKLGIRLAVDDFGTGYSSLNYLRRLPLDYLKI 852 Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + A+ SII +AK++ IA+ + + L CD+IQ + Sbjct: 853 DRSFIDDVTMDFSADAVATSIIGIAKSLGMQTIAEGVETSAQLMFLRDNQCDFIQGFYFY 912 Query: 942 SPLGFNSILKLL 953 P+ I K L Sbjct: 913 KPMPAADISKQL 924 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 54/161 (33%), Gaps = 11/161 (6%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435 ++++++ F V + Q + E+ + S + D + V +A Sbjct: 226 VVLLVLRFQVQDRLRREDEVKQELGRSEEKYRVLFEESLIGICVADFESAEIVECNNYLA 285 Query: 436 TILGLASGSMHGPIRNWLPYIHIN---DRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQ 491 ++ + G + +H + D+ G G + ++ + + Sbjct: 286 HLVERHPDELIGQPQ---RILHPDSEIDKSTGVSITFQKHHGEDFGTI-LNSQLITKNGK 341 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + ++ + S G+ G+ D+TE+ K + Sbjct: 342 LRDVEVQGGVV--SFGEKEYQYGLFLDVTERNKYEQQSYRL 380 >gi|146294937|ref|YP_001185361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella putrefaciens CN-32] gi|145566627|gb|ABP77562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella putrefaciens CN-32] Length = 1216 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 163/607 (26%), Positives = 281/607 (46%), Gaps = 22/607 (3%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 L + A+ L+ G ++ ++ + + + SG+ + Sbjct: 620 KHYLHKNGQSVAVRLNGALVTGANGEQLVLFIVEDITEQERTVARVNLLAQVFQQSGEGI 679 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY------IHINDRDNFRTILDSFV 472 D V + I G + + G +L I R L+ Sbjct: 680 TIIDANDIIVDVNTAFSQITGYSREDIIGKNCRFLEAKRTDKSIDPQ----VRAALEQ-- 733 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G Q E R D + + + + +G + YIG DI+E+K S E I Sbjct: 734 ---TGFWQGEVWDRHKDGYDFPKWLMMSVVRDESGAVSHYIGSFTDISERKMSEERIHFL 790 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D+LT +PNR S L + + + + VM ID+D +K IND LG VGD +L Sbjct: 791 AHHDSLTLLPNRLSLQSSLEIVFGEALASQS-QIAVMFIDMDHFKNINDTLGHHVGDQLL 849 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + + RR+ ++ +I+ARL G+ F ++L S+ N ++A A A+R ++ + + Sbjct: 850 LEVARRLKNIVDNNEIVARLGGDEFVVVL-SDTNHDEVASLAEALRSGLSQTYIIDNNSL 908 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710 + SIG + + + T ++KNA++AMY AK G N+ + F + ++R I+ Sbjct: 909 HSSPSIGISLFPTDGNTVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLITERQHIETG 968 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L + N EL L Y P I + ++V +EAL++W HP++G IS F+ IAEE+ MI I Sbjct: 969 LRQVLANEELQLHYQPQIDIRTGQVVSVEALVRWQHPEFGLISPDRFISIAEEIDMIIPI 1028 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++LE + +WR + + +N+++ L + + + ++ K ++L Sbjct: 1029 GQWVLETAMAQLAAWRAA-GATRLRMAVNLSAHQLRKDTIVADITNVLLKHQLGKGALEL 1087 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ESV M PE++ LL LR+ GI L +DDFGT S LSYL +P D +K + S + Sbjct: 1088 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1147 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 AI + I M+ + T++A+ + E + L+ MGCD +Q + + PL Sbjct: 1148 IETDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGYYFSKPLPAEE 1207 Query: 949 ILKLLKE 955 + ++ Sbjct: 1208 CFRFIQR 1214 Score = 47.3 bits (111), Expect = 0.012, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 9/154 (5%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI--VWDWDIVRDRVTTTPDIATILGL 440 + + + + F + +R + + D V I G Sbjct: 522 TMALSKEIARSQAFQATLVESEQRYRNLFDKAPVGHVLKQVD-NGRFVAINQAFTDITGY 580 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRI 499 + + + W + + L+ RR G Q + + Q + + Sbjct: 581 SLDEL-NQLDPW-ELTSKRYQLSEAEQLERLKQTRRYGPYQKHY--LHKNGQSVAVRLNG 636 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 ++ +NG+ L + I DITEQ++++ + A Sbjct: 637 ALVTGANGEQL-VLFIVEDITEQERTVARVNLLA 669 >gi|167589118|ref|ZP_02381506.1| hypothetical protein BuboB_27536 [Burkholderia ubonensis Bu] Length = 761 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 156/585 (26%), Positives = 273/585 (46%), Gaps = 21/585 (3%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLA 441 +++ V+ Q + E A+ S + ++ + P I G A Sbjct: 189 ALLEQVIERKLAEQALRLKHE----AIEASINGIFLINNRLPDNPIEYVNPAFERITGYA 244 Query: 442 SGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 S + G RN + + D+ R IL+ R G R D W + Sbjct: 245 SDEVKG--RNIRCLLGEDQDQPGIRAILEVMRDGREG--HEVLRSYRKDGTPFWSECYVA 300 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + +++ +I ++ I NDI+E K+ E + A D LT +PNR +DR+ + + Sbjct: 301 GIRDNSEEITHFVVILNDISEAKRLEELLHNRANYDTLTKLPNRLLMMDRIAEAVAKAQR 360 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D R V +D+D++K IND LG GD +L + RR+ E ++ D +ARL G+ F I+ Sbjct: 361 DHG-RVAVAFVDLDRFKFINDSLGHDAGDVLLQEIARRLCECVRESDTVARLGGDEFVIL 419 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + + ++ + I P+ L E VT SIG + + + +LKNA+ A Sbjct: 420 MEVAGD---VSPVMQRIVDRIGQPVTLAGEEHAVTCSIGVSVYPQDGRDAETLLKNADTA 476 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G N + F+ ++ DL A+E E L Y P+I L I+G Sbjct: 477 MYQAKEIGRNSFQFFKDDMNARLNERILLETDLRHAMERGEFELYYQPVIELRGGTIIGF 536 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP G + S F+ IAE+ +I I ++L + +W + +L+ Sbjct: 537 EALIRWHHPSKGLVLPSSFIPIAEQSDLILRIGEWVLRQACTQNQTWVRAGIST-VPVLV 595 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++++ ++ +Q ++ +T +P ++L +E++ M P R+ + +L+ IG+ + Sbjct: 596 NLSARQFDRQDIVRLVQRVLLETGLAPGLLELEITETLSMQAPRRTIEFIEKLKAIGVKV 655 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 +DDFGT S L+YL P D +K + S M+ + +AI ++I M ++ T++A+ Sbjct: 656 AIDDFGTGYSNLTYLKKFPVDKLKLDSSFMSEITSNKDSMAIASAVIDMGHSLNLTVVAE 715 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + E + L GCD +Q + L + L++ LV+ Sbjct: 716 GVEQESQLSLLCARGCDLMQGHLFSPALPADEFAALVRSGRKLVR 760 >gi|304412077|ref|ZP_07393687.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS183] gi|307305972|ref|ZP_07585718.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica BA175] gi|304349627|gb|EFM14035.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS183] gi|306911465|gb|EFN41891.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica BA175] Length = 1215 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 160/607 (26%), Positives = 279/607 (45%), Gaps = 22/607 (3%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 + + A+ L+ G +I ++ + + + SG+ + Sbjct: 619 KHYVHKNGQLVAVRLNGALVTGADGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGI 678 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP------YIHINDRDNFRTILDSFV 472 D V + I G + + G +L I R L+ Sbjct: 679 TIMDANDIIVDVNSAFSQITGYSREEIIGKNCRFLEAERTDKGIDPQ----VRAALEQ-- 732 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G Q E R + + + + G + YIG DI+E+K S E I Sbjct: 733 ---TGFWQGEVWDRHKHGYDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFL 789 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D+LT +PNR S RL ++ A + + VM ID+D +K IND LG VGD +L Sbjct: 790 AHHDSLTLLPNRLSLQSRLE-VVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLL 848 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + + RR+ ++ D +ARL G+ F + L + N ++A A A+R ++ + + + Sbjct: 849 LEVARRLKNIVGDTDTVARLGGDEFVVALSN-TNHDEVASLAEALRSGLSQTYIINNQAL 907 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710 + SIG + + + + ++KNA++AMY AK G N+ + F + ++R I+ Sbjct: 908 HSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAAMNTLITERQQIETG 967 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L + N EL L Y P I + ++V +EAL++W HP++G ++ F+ IAEE+ MI I Sbjct: 968 LRQVLANDELRLHYQPQIDIRTGQVVSVEALVRWQHPEFGMVAPDRFIPIAEEIDMIIPI 1027 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++LE + +WR + + +N+++ L + + + ++ K ++L Sbjct: 1028 GQWVLETAMAQLAAWRAAGATE-LRMAVNLSAHQLRKDSIVADITNVLLKHQLGKGALEL 1086 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ESV M PE++ LL LR+ GI L +DDFGT S LSYL +P D +K + S + Sbjct: 1087 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1146 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 AI + I M+ + T++A+ + E + L+ MGCD +Q + + PL Sbjct: 1147 IESDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGFYFSKPLAAEE 1206 Query: 949 ILKLLKE 955 + ++ Sbjct: 1207 CFRFIQR 1213 Score = 58.0 bits (139), Expect = 9e-06, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 17/213 (7%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 +H + AVL+ + L + + ++ ++ + V + Sbjct: 466 WHIVIYQSYAVLMGDTFSLSLLMLLLAFITCAVVGGMTLVSSGERQRIAEKVTEKTMALS 525 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + F + +R + V V P + G + + Sbjct: 526 KEIARRQAFQATLVQSEQRYRNLFDKAPVGHVLKRLEDGQFVAINPAFEAMTGYSLDEL- 584 Query: 447 GPIRNW------LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + W + + R G Q + + Q + + Sbjct: 585 NQLDPWDLTPKRYQLSEPEQLERLKQT------RRYGPYQKHY--VHKNGQLVAVRLNGA 636 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 ++ ++G+ L + I DITEQ++++ + A Sbjct: 637 LVTGADGEQL-ILFIVEDITEQERTVARVNLLA 668 >gi|160877450|ref|YP_001556766.1| PAS/PAC and Chase sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160862972|gb|ABX51506.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS195] gi|315269652|gb|ADT96505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS678] Length = 1215 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 161/605 (26%), Positives = 279/605 (46%), Gaps = 22/605 (3%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 + + A+ L+ G +I ++ + + + SG+ + Sbjct: 619 KHYVHKNGQLVAVRLNGALVTGADGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGI 678 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP------YIHINDRDNFRTILDSFV 472 D V + I G + + G +L I R L+ Sbjct: 679 TIMDANDIIVDVNTAFSQITGYSREEIIGKNCRFLEAERTDKNIDPQ----VRAALEQ-- 732 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G Q E R + + + + G + YIG DI+E+K S E I Sbjct: 733 ---TGFWQGEVWDRHKHGYDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFL 789 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D+LT +PNR S RL ++ A + + VM ID+D +K IND LG VGD +L Sbjct: 790 AHHDSLTLLPNRLSLQSRLE-VVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLL 848 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + + RR+ ++ D +ARL G+ F + L S+ N ++A A A+R ++ + + + Sbjct: 849 LEVARRLKNIVGDTDTVARLGGDEFVVAL-SDTNHDEVASLAEALRSGLSQTYVINNQAL 907 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710 + SIG + + + + ++KNA++AMY AK G N+ + F + ++R I+ Sbjct: 908 HSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAAMNTLITERQQIETG 967 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L + N EL L Y P I + ++V +EAL++W HP++G ++ F+ IAEE+ MI I Sbjct: 968 LRQVLANDELRLHYQPQIDIRTGQVVSVEALVRWQHPEFGMVAPDRFIPIAEEIDMIIPI 1027 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++LE + +WR + + +N+++ L + + + ++ K ++L Sbjct: 1028 GQWVLETAMAQLAAWRAAGATE-LRMAVNLSAHQLRKDSIVADITNVLLKHKLGKGALEL 1086 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ESV M PE++ LL LR+ GI L +DDFGT S LSYL +P D +K + S + Sbjct: 1087 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1146 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 AI + I M+ + T++A+ + E + L+ MGCD +Q + + PL Sbjct: 1147 IESDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGFYFSKPLPAEE 1206 Query: 949 ILKLL 953 + + Sbjct: 1207 CFRFI 1211 Score = 56.1 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 5/207 (2%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 +H + AVL+ + L + + ++ ++ + V + Sbjct: 466 WHIVIYQSYAVLMGDTFSLSLLMLLLAFITCAVVGGMTLVSSGERQRIAEKVTEKTMALS 525 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + F + +R + V V P + G + + Sbjct: 526 KEIARRQAFQATLVQSEQRYRNLFDKAPVGHVLKRLDDGQFVAINPAFEAMTGYSLDEL- 584 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + W + T + R Y+ + Q + + ++ ++ Sbjct: 585 NQLDPW--DLTPKRYQLSETEQLERLKQTRRYGPYQKHYVHKNGQLVAVRLNGALVTGAD 642 Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533 G+ L + I DITEQ++++ + A Sbjct: 643 GEQL-ILFIVEDITEQERTVARVNLLA 668 >gi|300114166|ref|YP_003760741.1| GAF/PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299540103|gb|ADJ28420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nitrosococcus watsonii C-113] Length = 946 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 154/574 (26%), Positives = 271/574 (47%), Gaps = 12/574 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 +L + Q + R L + + V D V I G+ + Sbjct: 367 ILDAYHNDQRRKNAESRLRLTAKVFESTVEGVIITDTQAYIVDVNEAFTHITGITRAEIM 426 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G L + G+ Q E + + + + + + + NS Sbjct: 427 GQH---LSRLQPKQGKPISFQRIRRSIKSTGQWQGELWSQRKNGELYPLWVTANAVRNSQ 483 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 I ++ I +DIT +K++ + + A D LTG+PNR FLDRL + + D+ R Sbjct: 484 EAITHFVAIFSDITLRKQTEQRLYHLAHHDALTGLPNRSLFLDRLEHAIHHAQRHDH-RL 542 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ ID+D++K +ND LG +GD +L + R+ ++ D +ARL G+ F +I+ + + Sbjct: 543 AVLFIDLDRFKFVNDTLGHPIGDSLLKQVAERMRLNVRAEDTIARLGGDEFTVIIENFTD 602 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + ++ A + ++ P N+ +E+ ++ASIG + + ++ +L++A+ AMY AK Sbjct: 603 TSALSLIAQKIIEACKEPFNIKGKELFISASIGISLYPEDGHEANMLLQHADAAMYRAKK 662 Query: 687 RGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 RG + + F ++++ ++ L A+ E L Y PII L IV +EALI+W Sbjct: 663 RGKSCYQFFTTDINTAATEQLALENLLREALARKEFQLYYQPIIDLESGAIVSVEALIRW 722 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 P+ G IS F+ +AEE +I + ++L W PI I IN+++ Sbjct: 723 LDPQLGLISPDTFIPLAEETGLILPLGEWVLLTACTQASIWNQCNPY-PIRIAINLSAHQ 781 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L + E + ++ KT P ++L +ES+++ E S L L+K+G L+LDDFG Sbjct: 782 LEQADFSERVSKILKKTALLPHHLELELTESMLINRMESSLKTLNTLKKMGCRLSLDDFG 841 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL P DTVK + S + AI ++ MA +++ +IA+ + Sbjct: 842 TGYSSLAYLKRFPIDTVKIDRSFVQDISIDPDDAAITTAVTTMAHSLKRKVIAEGVETRE 901 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L ++ D Q ++ PL + + +LLKER Sbjct: 902 HVDFLNKINVDEAQGYFISHPLPASDLSQLLKER 935 >gi|312623566|ref|YP_004025179.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Caldicellulosiruptor kronotskyensis 2002] gi|312204033|gb|ADQ47360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caldicellulosiruptor kronotskyensis 2002] Length = 1016 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 147/569 (25%), Positives = 275/569 (48%), Gaps = 11/569 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + E+ V D +W+ D ++ + + WL + Sbjct: 446 SEMLQEEKEKYKFLVENVSDCIWEIDFNEKKIEFYGRLKDQFDIDVIKSKNDFSAWLEFF 505 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H +DR L + ++++E R+R + W+ ++ + N G + I + Sbjct: 506 HEDDRSTVFKKLQDAILLHEEKVEFESRIRDKHGNWRWISSHVQILYNEEGKPEKIIAVN 565 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D T +K+ I A+ D LTG+PNR+ F +RL ++++ + + + V++IDID + Sbjct: 566 IDWTAKKEYEHRIEYIAYYDTLTGLPNRKLFEERLESLIEKAEA-EKTQGAVVLIDIDNF 624 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633 K IND+ G GD+ L+++T+++ E L AR+ G+ F +IL ++ + Sbjct: 625 KDINDLYGHEAGDEYLIAVTKKVLEYLNSIKLDTFFARVGGDEFAVILDGLAKKEEVIEV 684 Query: 634 AIAMRKSIAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + I + + E I +ASIG + + + E+ +N ++A+ AK G N Sbjct: 685 CTKLLGIFESEIYIQKIEGCIFTSASIGVSFYPDDGKSVKEIFRNVDMALSSAKENGKND 744 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F + ++ I++ L A+E + L Y P+I L + EI +EAL++W P Sbjct: 745 FQIFMPFMLMKNFKKIEIEKSLKKAIEADQFELYYQPVINLRNMEIHSVEALLRWHLPGK 804 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS EF+ +AEE +I I ++E+ D+ W ++ + I IN++++ Sbjct: 805 GIISPLEFIPVAEESGLIVRIGEMVIEKAFSDLKEWENKGIDY-LHIAINLSTRQFKTKF 863 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + +Q I + +P +I +E+ + N + S +L L ++GI +DDFGT S Sbjct: 864 FEKMVQKQIERYGVNPQKISFEITETGAVENFDVSLKILSFLCQLGIKFLIDDFGTGYSS 923 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P VK + S ++ +++ AI+ II MA ++ +IA+ + + +++ L Sbjct: 924 LIYLRRLPIGGVKIDRSFISEIELSKESRAIVEGIILMAHKLDLKVIAEGVETKRELEIL 983 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD+ Q + P+ I KLL ER Sbjct: 984 KEIGCDFAQGYLFSKPVPKTEIEKLLIER 1012 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 55/164 (33%), Gaps = 2/164 (1%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 N I + + L++I+ + +G + + L + IV ++ Sbjct: 258 NRQILLSALYLLIIILFATSVIIFVMTRINRGLERGKQAYEKYAQLLAENANAIVLTLNL 317 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + I G S + G W+ + R + L + + +E Sbjct: 318 KGEIIYFNKFAEQITGYKSEEVVGKK--WVDIFIPSHRREYIENLFKRIAEVKILNDHEN 375 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + W++ + +S + I DIT+ K++ + Sbjct: 376 EIVTKNGDIRWILWNNTLIESSYLNEPLIISTGLDITQIKRTQQ 419 >gi|312963435|ref|ZP_07777917.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens WH6] gi|311282241|gb|EFQ60840.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens WH6] Length = 1247 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 153/576 (26%), Positives = 267/576 (46%), Gaps = 12/576 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + Q + ++ + + + V D ++ + I G + Sbjct: 664 MLTIARDITERQLMQEKLQQAATVFESTAEGVLITDTRQNISAVNRAFSEITGYSEAEAL 723 Query: 447 G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G R +H D + + G Q E R + + + I + N Sbjct: 724 GQTPRLLASGLH--DSAFYAAMWHQLTAQ--GHWQGEISNRRKNGALYPSWLTISAVRNP 779 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + I ++ + DI+ K + + A D LTG+PNR F +RL L+ + Sbjct: 780 DQLITHFVAVFADISSLKLAQARLDYQAHHDPLTGLPNRTLFENRLQAALNGHQETGK-Q 838 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K IND LG VGD +L + R+ E L+ D +ARL G+ F I+L Sbjct: 839 GAVLFLDLDRFKHINDSLGHPVGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQ 898 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ A A + +P E E ++ASIG + + + ++KNA+ AMY +K Sbjct: 899 HANDAAYLANKLLACFTLPFQAGEHEFFISASIGTSLYPQDGTDVATLVKNADAAMYRSK 958 Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G N VE + + +RV ++ +L A+E EL L Y P L + ++G EALI+ Sbjct: 959 AKGRNRVEHYTRDLTAQAKERVALEHELRRAIERDELSLYYQPKRSLKTQALIGAEALIR 1018 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP +G++ F+ +AEE MI I ++LE+ R + +W+ + + +N+A Sbjct: 1019 WHHPTFGDVPPEHFIALAEENGMILQIGDWVLEQACRQLHAWQGTYHDFG-SLSVNLAGA 1077 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L L ++ L+ +P ++L +E+ +M E + +L +L+ +G+ L +DDF Sbjct: 1078 QLRHPNLLTRIEQLLRDYHLAPGCLQLEITENFIMSQAEEALEVLHQLKHLGVQLAIDDF 1137 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D +K + S + G AI+R+II + +++ TIIA+ + Sbjct: 1138 GTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDAAIVRAIIALGHSMQFTIIAEGVENT 1197 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKER 956 L GC+ +Q V+ PL L+ R Sbjct: 1198 AQQAFLAAEGCEQMQGYIVSLPLPPELFAASFLRRR 1233 Score = 75.0 bits (183), Expect = 6e-11, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 5/168 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + L+ ++ IVI I + + Q + S V I W+ Sbjct: 267 LLMYGLPTVLLLSTVLAIVIRINRRLSSEISRRVALEQELRSSEYHYRGLVESLSAIAWE 326 Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 I +P +LG W IH D T R Sbjct: 327 ASISDFTYSYVSPHAEDLLGYPRAHWL-IPGFWRNIIHPADLTRAETYCYRETRANRDH- 384 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD + W+ + + +G G+ DI+E K++ E Sbjct: 385 SVDYRVITADGRCLWVRDIVSLI--EHGHEPVLRGLMIDISEAKRTEE 430 Score = 55.0 bits (131), Expect = 7e-05, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 13/182 (7%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 + + +I A + I++ I + T Q + + E+ + A S Sbjct: 515 LRSNGQAFTGLISAAPFQLDTVEAIVVVVRDITQLKET---QQQLQTSEEKFAKAFHASP 571 Query: 416 DI-VWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 D + + + I G A+ S+ ++ +N+R + ++ Sbjct: 572 DGLLLSRQHDGLLIEVNEGFSRITGFAAATSLDQSTLELGIWVDLNERKHMLELM----- 626 Query: 474 YRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 +R G ++ + +R AD Q + RP+ + D + IA DITE++ E + Sbjct: 627 HRDGFVRDFICHIRRADGQIRLCEVSSRPLPIGDDDC--MLTIARDITERQLMQEKLQQA 684 Query: 533 AF 534 A Sbjct: 685 AT 686 >gi|71906611|ref|YP_284198.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846232|gb|AAZ45728.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 994 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 141/569 (24%), Positives = 262/569 (46%), Gaps = 12/569 (2%) Query: 397 SQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLP 454 + + R + L G G+ + D R+ + +TI G + + G R Sbjct: 287 ERKLAEAEHRLADLVFTGIGEGICITDAKRNILRINDAFSTITGYQADEIVGQNPRLLKS 346 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H F + + G Q E R D + I + ++ G YIG Sbjct: 347 GVHS---PAFYAEIWKTIDQY-GNWQGEITNRHKDGSLVTEWLSISSLRDTTGTASHYIG 402 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +D++E++ + E I + D LT +PNR F DRL L + + ++++D++ Sbjct: 403 IFSDLSERQAAAERIQYLSSYDTLTELPNRHLFDDRLNQALLTARRFERGT-ALILLDLN 461 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +++ IND LG GD++LV +TRR+ ++ D + R +GN FG ++ + ++ A Sbjct: 462 RFRLINDTLGPPAGDEILVEVTRRLKLQVREGDTVGRRAGNEFGFVMANLSHERDALALA 521 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 M +I++P ++ + + +TASIG + + + ML++A+ A+ AK G N Sbjct: 522 QRMLDAISVPFSVAGQSVAITASIGISVFPKNGENGEAMLRSADAALLRAKQSGRNTFSF 581 Query: 695 FRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + + L A+ E + Y P + L ++G+EAL++W+ G I Sbjct: 582 YSPEMDADAARRLSIESALRDALARDEFCVHYQPQVSLDSGHMIGMEALLRWNSALLGPI 641 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S EF+ IAEE +I I ++L +W D + P+ + +N++ + +L Sbjct: 642 SPVEFIPIAEETGLIMQIGDWVLRTACHQTKAWLD-LGLLPLHVAVNLSPRQFRQADLPA 700 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++++ ++L +ES + + + + + +L+ +GI L+LDDFGT S L+Y Sbjct: 701 QVAHALAESGLPAGALELEITESAFIDDIDDAVAMCSKLKSLGIKLSLDDFGTGYSSLAY 760 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 + PFD +K + S + AI + I M +++ +++A+ + E L Sbjct: 761 VSRFPFDKIKIDQSFVRDIVNNPVNAAIASAAIVMGRSLNLSVLAEGVETEAQAAFLRSR 820 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPL 959 CD IQ + PL LL PL Sbjct: 821 RCDAIQGYLFSRPLPPEEFAPLLLSCKPL 849 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 16/161 (9%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGER-----------QSLAVLGSGDIVWDWDIVRDRVTT 430 + Q +LA + + ER +LA+ SG +W+ D VR+R Sbjct: 140 LEVRRAQWLLANQKAW--LEQEVERRIAENTQLDRHLTLALERSGFGIWEHDPVRNRNRW 197 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 + + +LG + + IH DR + + + R L EFR+R D Sbjct: 198 SEGLRQMLGYEQE--PEQLAESMNLIHPEDRPAVEAQVTASLRDRNSILIGEFRIRHHDG 255 Query: 491 QFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + W+ R R + + G IG DITE+K + Sbjct: 256 GWRWVESRGRIVEFDEAGQPTLMIGTMLDITERKLAEAEHR 296 >gi|218437596|ref|YP_002375925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] gi|218170324|gb|ACK69057.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] Length = 1471 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 146/587 (24%), Positives = 285/587 (48%), Gaps = 6/587 (1%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 G+ ++ + Q + R AV+ + + + + Sbjct: 885 GIEFAGRQARLVLVNDITEQLKAQQKLQESENRFRRAVIDAPLPILIHAEDGEIIQVNHA 944 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 + G + I +W + ++ R+++D + EF + + Sbjct: 945 WTELTGYTHEDI-PTIADWTEKAYGERKEIVRSVIDELYKIDGKVEEGEFTITIKTGETR 1003 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 P+ + + +A DITE+K++ E + A D LTG+PNR LDR+ Sbjct: 1004 IWNFSSAPLGRLADNRRLIMSMALDITERKQAEEQLRHAAVHDQLTGLPNRILLLDRIEQ 1063 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 + + ++ ++ ID+D++K +ND LG VGD +L ++ ++ ++ D +AR Sbjct: 1064 AIKRTQQEEKYLFALLFIDLDRFKVVNDSLGHWVGDQLLGAIADKLKACVRPMDTVARFG 1123 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F I+L + + + A + + L ++ ++ SIG +S + ++SE+ Sbjct: 1124 GDEFVILLENLTSRTEATKMAQQITDELRSSFCLQGQDFFISVSIGITFPSSYEESASEL 1183 Query: 674 LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 L+NA++AMY AK +G F + + + ++ +L LA+E EL + Y PI+ L Sbjct: 1184 LRNADIAMYRAKEKGRARYTIFDSKMHIQATRLLELETNLRLALEREELIVHYQPIVSLT 1243 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-N 790 +++G EAL++W+HPK G IS EF+ IAEE +I + ++L R + +W+ + Sbjct: 1244 TGKLLGFEALVRWEHPKKGLISPGEFIPIAEETGLIIPLGEWVLLESCRQMKAWQKEFSG 1303 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + I + +N++ K L L +++++ +T +KL +ES++M N E LL + Sbjct: 1304 LDKIRVSVNLSGKQLEYPHLINCLESILKQTGLEGKNLKLEITESMLMNNKEVVSDLLLQ 1363 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKN 908 ++ I +++DDFGT S LSYL Y+P DT+K + S + T+ + I+ +II +A + Sbjct: 1364 IKGKNIQISIDDFGTGYSSLSYLHYLPVDTLKIDRSFVNRMTQLGENFEIVEAIINLAHH 1423 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ ++A+ + E IK+L ++GC+ Q + PL + ++ Sbjct: 1424 LQMDVVAEGVETEQHIKQLKQLGCESGQGYFFSKPLDSQKVTSWFEK 1470 Score = 124 bits (312), Expect = 6e-26, Method: Composition-based stats. Identities = 58/369 (15%), Positives = 126/369 (34%), Gaps = 36/369 (9%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 T + + ++ ++ I +++ V + ER LA+ GSGD Sbjct: 496 TKTGEIIDCKWYNSVQYDQSGEILSI-LSLVLDVSEQKRAEAALQVSQERLQLALEGSGD 554 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 +W+W++ + LG W + L ++ + Sbjct: 555 SIWEWNLQTGEIYCDQSWWQKLGYEPDHETMSYEWWRSQVAPEFLPIHEASLQDYLAGKT 614 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 L E++++++ + WM R + ++ + G+ L+ +G DITE K+ E + Sbjct: 615 EYLTLEYKIQSSSGDWVWMSARGKSVANDEEGNPLKIVGTHRDITESKEIEEELKQQ--- 671 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGIAVGDDVLVS 594 + L TI+D + + ID + + +N+ + +L Sbjct: 672 ------------GELLQTIVDY------IPVMLAYIDPNYNFLWVNEEF-----ERILGW 708 Query: 595 LTRRIGELLKFPDILARL--SGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLERE 651 I L +ILA+L + ++ ++ + DF +R + + + Sbjct: 709 SLEEIKNL----NILAQLYPDPDERQYVMNYIQSAEEKWEDFKTRLRNGTTIDTSWANVK 764 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL 711 ++ A IG + + E L+ +E + N + + V + V Sbjct: 765 LSNGAIIGIGQDITVRKHIEEALRESEQKYRLLFYANPNPLWVYDVKTLAFLEVNQAAIE 824 Query: 712 CLAVENSEL 720 E Sbjct: 825 HYGYSREEF 833 Score = 83.1 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 65/148 (43%), Gaps = 5/148 (3%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + + V +++ + + ++ + + +ILG ++ + Sbjct: 272 AQIQERQAVEKALMESEAKYERLVERLPAVIYQFSPTKGKLYCSSYVKSILGYSTDEIDL 331 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 P W+ IH D + ++ FV + + E+RV+ A Q+HW++ R ++ Sbjct: 332 PWL-WINSIHPEDLPKVKEMIQEFVQGKN--FEIEYRVKDAQGQWHWILDRSIGRQAADQ 388 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQ 535 + + G+A DITE KK+ + L A Q Sbjct: 389 E-MMIEGVAIDITETKKT-QMALQQAHQ 414 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 43/143 (30%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 V + T + + + V S V +WD + I G Sbjct: 394 GVAIDITETKKTQMALQQAHQCLTFHVDNSPLGVIEWDNDYRVKRWSSQAEKIFGWKEEE 453 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G +++ D D + + R R + + Sbjct: 454 VVGKGWQEWQFVYEEDLDLIVAKVSEIIKKETSRHFVTNRNYTKTGEIIDCKWYNSVQYD 513 Query: 505 SNGDILRYIGIANDITEQKKSLE 527 +G+IL + + D++EQK++ Sbjct: 514 QSGEILSILSLVLDVSEQKRAEA 536 Score = 67.7 bits (164), Expect = 9e-09, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 3/166 (1%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 I + ++++V + + + Q + R V +++ + Sbjct: 93 IINGALLTMMIVVTVGRQLYLGQLNILKKIKQALKKSRSRYRAIVEEQTELICRFRPDGT 152 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + I +LP I D+ L S +R + +E RV Sbjct: 153 LTFVNEAYYRYFEKTPEYLLEKI--FLPLIPFPDQQQVLDNLKSLNQQKRV-ITHEHRVI 209 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + W R + + G I+ + + DITE K+ + Sbjct: 210 ISSGEMRWHQWTNRAIVDRQGKIIEFQAVGRDITELKQIETALREL 255 >gi|89098032|ref|ZP_01170918.1| hypothetical protein B14911_20928 [Bacillus sp. NRRL B-14911] gi|89087195|gb|EAR66310.1| hypothetical protein B14911_20928 [Bacillus sp. NRRL B-14911] Length = 974 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 141/563 (25%), Positives = 261/563 (46%), Gaps = 11/563 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + + D V+ D+ + + P G + G L Sbjct: 410 MLNNSLSVSEQYYRSLFDNNADFVYSTDMQGNFTSINPAFKRNFGFNEKEVIGKPA--LR 467 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D R V + E +++ + + ++ P++ G+ Sbjct: 468 FIDSRDVARVRRHFYRTVNGKEQYYNLE--IQSKNGARNLYELKNIPIT-VEGEPAGIYC 524 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +ITEQK+ + + A+ D TG+PNR F++ L +L + V+ +DID Sbjct: 525 IGRNITEQKRIEQEMTQLAYYDKDTGLPNRLKFMEELDDLLQKAKKKKR-PLAVLFMDID 583 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG GD +L + RI +L R SG++F +IL E +S ++ + Sbjct: 584 RFKLINDSLGHYAGDQILRQIAGRIEAILPPGSFFGRFSGDKFTLILAKEADSSRVTKLS 643 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++I+ P+ E+E +T SIG + + ++KNA++AM +KH+GGN + Sbjct: 644 NHILQAISSPVYYGEQEFFITGSIGASLYPGDGHEKETLMKNADIAMNRSKHQGGNRLTY 703 Query: 695 FRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + ++ + L A++ E +L Y P+ L I G EALI+W+HPK G + Sbjct: 704 YSTEMNEQTLLKLELESYLRKALQKKEFFLCYQPLTNLETGAIYGSEALIRWNHPKLGLV 763 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S +F+ +AEE +I I ++L+ R W ++ + + +N++ Sbjct: 764 SPGDFIPLAEETGLINEIGHWVLQTACRQTKEWHNKGLG-SLTVSVNVSVHQFQQPGFVH 822 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T+ P + L +ES ++ N E S L++ L++ GI + +DDFGT S LSY Sbjct: 823 KVLQVLKETMLEPQFLVLELTESSMLRNMENSILVIQELQRNGIRVAIDDFGTGYSSLSY 882 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L ++P D +K + S + IAI+ +II M + ++A+ + ++ L + Sbjct: 883 LKHLPIDALKIDRSFIDNLRSGSPDIAIVNAIITMGLGLHVKVVAEGVETAEQMRLLKDL 942 Query: 931 GCDYIQDSHVASPLGFNSILKLL 953 C + Q + PLG + L Sbjct: 943 KCHFAQGFFIHRPLGAEQFEEEL 965 >gi|78223826|ref|YP_385573.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens GS-15] gi|78195081|gb|ABB32848.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Geobacter metallireducens GS-15] Length = 821 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 166/815 (20%), Positives = 345/815 (42%), Gaps = 37/815 (4%) Query: 157 AVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSS 216 V ++ + + ++ + + +++G ++ LA L + M Sbjct: 24 DEVAVYFVLAGAMWLNLLFF--ALWRRRNEANSREALLVLGFSAGLARELFMLAMAIGQK 81 Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI-------IFL 269 L +D L + + + ++++ + Sbjct: 82 AL--------------MVDPRHLHAFFP---PVEHVLSGVATVIVAAAFMRYLTGDFFLA 124 Query: 270 FMYLHWNRWHAKVGYIT-FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY 328 YL YI FS A S + + A ++++ T+ + Sbjct: 125 RNYLGIGITLTLSCYIATFSWWADYITTNPASKFGQTWCDVLFHTIAALLLVFPTWHLFR 184 Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 H + + + +A +R + L+ I +L + + Sbjct: 185 HRTGWLRNIICFALVCFFLTETLKLVDIAYGERYEYIFTPIRRSFNLIGIYVLGYVYIRE 244 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + +R V + D V + + + + G Sbjct: 245 QESRRRRATAKVVESEKRYRTLVENVNMGISLIDGNNRIVMNNGYLEKMFRKNAEKLTGR 304 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + + + ++ + +++ R + E R+ D + + + P+ N G Sbjct: 305 FC-YQEFENRDECCDNCLGVEAMTTGRAVSREVE-RILD-DGEPSGLRLSAFPVFNEQGK 361 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 ++I + DIT++K++ E I A+ D+LTG+PNR +DRL+ + + + + Sbjct: 362 ATKFIKVVEDITDRKRAEEKIRRLAYYDSLTGLPNRPLMMDRLSQAIRHARRHGEV-VAL 420 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D++K +ND G VGD +L + R+ + D LARL G+ F II + Sbjct: 421 LFLDLDRFKDVNDSQGHRVGDRLLQEVAARLSGCTRESDTLARLGGDEFVIIAPGVRAAT 480 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + A + ++A P L + + + SIG + S +L+ A++AMY AK RG Sbjct: 481 DASLLADKILAALAEPFTLDRQTLHIATSIGIVLFPSDGGNGEMLLQRADMAMYAAKDRG 540 Query: 689 GNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 GN F +++ +R ++ED+ A+ N E +L+Y P + ++VG+EAL++W+H Sbjct: 541 GNSYRFFSAEMNTRAVERHELEEDMRQALTNGEFFLMYQPQVNTGTWKVVGVEALVRWNH 600 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G I S F+ +AEE I + ++LE R W+ PP+ + +N+ ++ Sbjct: 601 PRKGVILPSRFIPVAEETGFISKLGRWVLEEACRQGAQWQHDGL-PPLQMGVNLCARQFT 659 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 E+ + ++ KT +++ +E+++M + E + LG+L+ +G+ L +DDFGT Sbjct: 660 HEEIVGTVSDVLQKTGLPSELLEIELTETMLM-DSETAVSTLGQLKALGVRLAIDDFGTG 718 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S +YL + P D +K + S + + R AI+ +I+ +A+++ ++A+ + E + Sbjct: 719 YSSFNYLKHFPLDRIKIDQSFIRDIGQSRGNGAIIEAIVAVARSLGPEVLAEGVETEEQL 778 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + L + C IQ + + PL + + +L++E P Sbjct: 779 RYLMSITCADIQGFYFSRPLLPDDVSRLIRESLPG 813 >gi|229592969|ref|YP_002875088.1| putative signaling GGDEF/EAL domain-containing protein [Pseudomonas fluorescens SBW25] gi|229364835|emb|CAY52875.1| putative signalling GGDEF/EAL domains containing conserved protein [Pseudomonas fluorescens SBW25] Length = 1247 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 151/574 (26%), Positives = 266/574 (46%), Gaps = 12/574 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + Q + ++ + + + V D ++ + I G + Sbjct: 664 MLTIARDITERQLMQEKLQQAATVFESTAEGVLITDTRQNISAVNRAFSEITGYSEAEAL 723 Query: 447 G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G R +H D + + G Q E R + + + + I + N Sbjct: 724 GQTPRLLASGLH--DSAFYAAMWHQLTAQ--GHWQGEISNRRKNGELYPSWLTISAVRNR 779 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 I ++ + DI+ K + + A D LTG+PNR F RL L+ + Sbjct: 780 EQLITHFVAVFADISSLKLAQARLDYQAHHDPLTGLPNRTLFESRLQAALNGHQETGK-Q 838 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K IND LG +GD +L + R+ E L+ D +ARL G+ F I+L Sbjct: 839 GAVLFLDLDRFKHINDSLGHPIGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQ 898 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ A + P E E ++ASIG + + + ++KNA+ AMY +K Sbjct: 899 HASDAQHLANKLLACFTPPFQAGEHEFFISASIGTSLYPEDGTDVATLVKNADAAMYRSK 958 Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G N VES+ + ++RV ++ +L A+E EL L Y P + L ++++G EALI+ Sbjct: 959 AKGRNRVESYTRDLTAQANERVALEHELRRAIERDELSLYYQPKLSLATQQLIGAEALIR 1018 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP +G++ F+ +AEE I I ++LE+ R + +W+ + + +N+A Sbjct: 1019 WHHPTFGDVPPEHFIALAEENGTILQIGDWVLEQACRQLHAWQGTFDDFG-PLSVNLAGA 1077 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L L ++ L+ P R++L +E+ +M E + +L +L+ +G+ L +DDF Sbjct: 1078 QLRHPGLLGRIEQLLRDYGLDPGRLQLEITENFIMSQAEEALEVLHQLKHLGVQLAIDDF 1137 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D +K + S + G AI+R+II + +++ TIIA+ + Sbjct: 1138 GTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDAAIVRAIIALGHSMQFTIIAEGVENP 1197 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954 L GC+ +Q V+ PL L+ Sbjct: 1198 AQQAFLAAEGCEQMQGYIVSLPLPPALFATTFLR 1231 Score = 76.1 bits (186), Expect = 3e-11, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 7/169 (4%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + L+ ++ IVI I + + Q + S V I W+ Sbjct: 267 LLLYGLPAVLLLITVLAIVIRINRRLSSEISRRVALEQELRSSEYHYRGLVESLSAIAWE 326 Query: 421 WDIVRDRVT--TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 + D +P +LG W IH D R Sbjct: 327 ASV-TDFTYSYVSPHAEELLGYPRAHWL-IPGFWRNIIHPADLLRAEAYCYRETRANRDH 384 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD + W+ + + +G G+ DI+E K++ E Sbjct: 385 -SIDYRVITADGRCLWVRDIVSLI--EHGHEPVLRGLMIDISEAKRTEE 430 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 12/155 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGL-A 441 V++ + Q + + E+ + A S D + + + I G + Sbjct: 540 VVVVRDITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDGLLLEVNDGFSRITGFNS 599 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF--RVRAADNQFHWMIIRI 499 + S+ + ++ +N+R + ++ R +F +R D Q + Sbjct: 600 AASLDQSTLDLGIWVDLNERKHMLELMA------RDGFVRDFICHIRRNDGQIRLCELSS 653 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 RP+ + D + IA DITE++ E + A Sbjct: 654 RPLPIGDDDC--MLTIARDITERQLMQEKLQQAAT 686 Score = 40.3 bits (93), Expect = 1.6, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 17/152 (11%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASG 443 ++ + + + ++ + DI+ + + +GL + Sbjct: 417 GLMIDISEAKRTEEALQLSEQKFASVFQQCPDILVIARLSDGCLLEVNKAFEDQVGLKAE 476 Query: 444 SMHGPIRNWLPY-----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G L I + E + Q +I Sbjct: 477 DVIGKTATALNIWGIPGIGPDLLKRV---------QTTSIRNLEMPFLRNNGQAFTGLIS 527 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 P + + + DIT+ K++ + + Sbjct: 528 AEPFQLDTTEA--IVVVVRDITQLKETQQQLQ 557 >gi|322421398|ref|YP_004200621.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320127785|gb|ADW15345.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M18] Length = 855 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 154/611 (25%), Positives = 279/611 (45%), Gaps = 17/611 (2%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 + ++ R ++ + G + + I+ + + + E+ V Sbjct: 236 LRLSARDGRNVAVEVVCTGYRIDQTKVLQFNIRDITVRKNAEEALLKSEEQCRTIVSNIN 295 Query: 416 DIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + V+ V +P I G + W IH DRD L+S Sbjct: 296 EYVYSVRFEHGDIKSVYHSPKCLDITGYTPEDYYKDPLLWFTMIHEEDRDQVVQFLNSIF 355 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD---ILRYIGIANDITEQKKSLEGI 529 + R+ D W++ G+ I R G DITE K++ E I Sbjct: 356 AGE-DQEPIRHRIVHKDGTVRWILNNCAVQKTRKGERVAISRLDGFILDITEIKRAEENI 414 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LT +PNR + R+ +L ++ ++ +DID +K+IND +G VGD Sbjct: 415 FFLAHHDPLTRLPNRSTLYARIEQVLSVAQKSRR-NVALLFLDIDGFKQINDSMGHDVGD 473 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L S+ R++G+ + D+++RL G+ F ++L +A+ + K I L Sbjct: 474 RLLQSVARKLGDCTRSCDVVSRLGGDEFVVVLWDCG----VAETTMVAEKIINAGFPLPG 529 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707 +TVT SIG + + +LK+A++AMYHAK GGN+ E F + +R I Sbjct: 530 TNVTVTPSIGISVYPDDGRDYLALLKHADIAMYHAKKSGGNNFEFFTHKLNELAHERFAI 589 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + +L A+E E L Y P + L+ G+EALI+W HP G I +F+ IAEE ++ Sbjct: 590 EAELRRALEREEFVLHYQPKVDLITGRFSGMEALIRWQHPVRGLIMPEQFISIAEESGLL 649 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I+ +++ + R I W+ Q + +N+++ + E ++A + +T P Sbjct: 650 HQISKWIIPTVCRQIQQWQRQGIR-SVSAAVNLSASFFQHRDFEETIEASLLETGIPPEC 708 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +E+ +M +P+R + ++ +G+ L++DDFG S LSYL +P D +K + S Sbjct: 709 LELELTEATIMSDPQRVLGSMAAMKALGLQLSIDDFGIGYSSLSYLKKLPVDKLKIDQSF 768 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + A++R++I + ++++ +IA+ + + L G + Q + + PL Sbjct: 769 IRNIARDSDNAAVVRAVISIGRSMQLKVIAEGVENASQLAWLQAEGSEEAQGYYFSRPLP 828 Query: 946 FNSILKLLKER 956 + LL +R Sbjct: 829 VQKMTALLVQR 839 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 6/146 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLA 441 G + ++ + + R + D + D + P + +LG A Sbjct: 138 GSEIRLALIEITESEKALQVSEARYRGLFEAAKDGIMIIDSATGEIGDVNPFLIEMLGYA 197 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 M G R W + + + R + R+ A D + + + Sbjct: 198 RDEMVGR-RLWE--VPPFTAIAATETEFAVLQDRDYLHSDDLRLSARDGRNVAVEVVCTG 254 Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527 +L++ DIT +K + E Sbjct: 255 YRIDQTKVLQF--NIRDITVRKNAEE 278 >gi|307822937|ref|ZP_07653167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacter tundripaludum SV96] gi|307735712|gb|EFO06559.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacter tundripaludum SV96] Length = 1045 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 145/614 (23%), Positives = 268/614 (43%), Gaps = 11/614 (1%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIV-ILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + + N + A + + I + + + Sbjct: 435 GAVIGVFTLYAAEINAFDRSARDLLAEMAMDIDYALNSFEREAQRRHAESSLADSHHLLK 494 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTI 467 + + + ++ D + P A G + + G L + + + +R Sbjct: 495 MIIDTAPMRIFWKDKELRYLGCNPAFAKDAGESVLQDVVGKDDYQLAW--KDQAEYYRAD 552 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + +L +E + D W+ P+ N + + +GI DITEQK E Sbjct: 553 DRLVMDSNTPKLAFEEQQTTPDGTTIWLRTSKVPLQNEAKETIGVLGIYEDITEQKCIEE 612 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A D LTG+PNR D L L L+ + +M +D+D +K IND LG ++ Sbjct: 613 RIHYLANFDPLTGLPNRTQLNDHLKYALSLAKRSNG-HLALMFLDLDHFKDINDSLGHSI 671 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L+ L +R+ +L+ D + RL G+ F ++L +++ A A + +IA + Sbjct: 672 GDALLIELAKRLRLVLRTEDTVTRLGGDEFILLLPGV-DAIGAAHVAQKLLDAIAGSYWI 730 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705 ++ +TASIG A + + + + K+A+ AMY AK G F + Sbjct: 731 ELYDLALTASIGIALYPADGVDLETLSKSADAAMYRAKQEGRQCYRFFTQEMQARSARNL 790 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + L A+E +L + Y P + + + ++G EAL++W HP+ G +S +EF+ +AE Sbjct: 791 QLVNALHHALERDQLQVYYQPQVAMQNGHVIGAEALLRWQHPELGMVSPAEFIPVAEGSG 850 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I +I ++L R +W D+ P+ + +N+++ +L E + ++ + Sbjct: 851 LILSIGEWVLRSAVRQAKTWIDEGFG-PLIMAVNLSAVQFRHPDLPELITRILDEEGLPH 909 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++L +E V M NP+ ++ L + G+ +++DDFGT S LSYL +K + Sbjct: 910 EYLELELTEGVAMHNPQGVIAVMNNLHERGVRMSIDDFGTGYSSLSYLKKFKVYKLKIDQ 969 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + + AI+ +II +AK + IA+ + + L GCD +Q + P Sbjct: 970 SFVRDISTDPEDKAIVSAIISLAKGLGLKTIAEGVETAGQLAFLREQGCDEMQGYLFSKP 1029 Query: 944 LGFNSILKLLKERF 957 + LLK+ F Sbjct: 1030 VPIEQFEALLKQGF 1043 >gi|171060372|ref|YP_001792721.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170777817|gb|ACB35956.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 863 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 151/585 (25%), Positives = 275/585 (47%), Gaps = 10/585 (1%) Query: 382 IGFTVIQHVLATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I + +Q L + + E+ + S + + + +P + G Sbjct: 267 IELSRLQRCLEELVAQRTALLEKSEEKYRILAEYSPNWEYWVAPDGSHLYVSPACGDVSG 326 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + IH +DR + V R+R D W+ + Sbjct: 327 YSPADFFADPALMASIIHPDDRTQWAAQQARAVPGEAS--ATVLRIRTRDGGERWLEHVV 384 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 +P+ + G +L G DIT+++++ + + +D LTG+PNR F + L + +A Sbjct: 385 KPVFSPAGQLLGLRGSYGDITQRRQAEQQLDYVTHRDALTGLPNRALFTEFLDQAVQKAA 444 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 +++ I++D +K IN+ LG + GD +L+ + RR+ ELL D +AR+ G+ F + Sbjct: 445 HSRG-EFSLLFINLDGFKTINESLGRSAGDQLLIEVARRLRELLPGVDAVARVGGDEFNV 503 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I+ + L I A + +++ L + + A IG A + + + +L +A+ Sbjct: 504 IVEHDVAGLGIDLVAQRIINALSHSYQLGAQSAYIGACIGIAQYPADGPAAESLLNSADA 563 Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 A++ AK +G N + F +R+ ++ DL A++ EL L Y P + L IVG Sbjct: 564 ALHRAKAQGRNVLRFFSPELTIRARERLSLEADLRRALQQGELALHYQPQVDLRSGRIVG 623 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 +EAL++W HP+ G I+ F+ +AEE +I + ++L I W D P Sbjct: 624 VEALLRWRHPQRGWIAPGAFIPLAEECGLIIELGDWVLRAACEQIRHWSDAGVAPRQT-A 682 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +NI++ + L + ++ ++ T +P R++L +ES VM ERS LL LR +G+ Sbjct: 683 VNISAVQISSGGLLDTVRRTLAATGIAPDRLELEITESFVMFERERSFKLLADLRALGVQ 742 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915 L++DDFGT S L+YL + +K + S + T R +I++++I M ++ +IA Sbjct: 743 LSIDDFGTGYSSLAYLQQLEVHKLKIDISFVRNMTRNRGNASIVKAVIAMGHSLGLEVIA 802 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 + + L + CD +Q V+ PL + I +LL+ P+V Sbjct: 803 EGVEEIEQAAHLLALQCDVMQGYLVSKPLPVDDITRLLESFEPIV 847 >gi|91775536|ref|YP_545292.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacillus flagellatus KT] gi|91709523|gb|ABE49451.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacillus flagellatus KT] Length = 722 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 153/582 (26%), Positives = 268/582 (46%), Gaps = 21/582 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + V S DI++ D + T+LG S+ G + Sbjct: 127 QNRSIHARLEESENLYRYLVNSSPDIIYTLDDSGHFTFINHRVETLLGYRRESLIGK--H 184 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD--NQFHWMIIR-IRPMSNSNGD 508 + I+ +D D + R E R++ D + I I + N+ G Sbjct: 185 YTEIIYSDDFDRASYAFNERRTGNRATRNIELRLKCKDLESDIRHFEINFITVVLNATGT 244 Query: 509 ----------ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 G+A DI+++KK E I A+ D LTG+PNR F DRL L+ + Sbjct: 245 YGGTHESGTPFSGTYGVARDISDRKKVEEVITRQAYHDTLTGLPNRALFKDRLNVALNHA 304 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + +M +D+D++K +ND LG GD++L + +R+ L+ D LAR+ G+ F Sbjct: 305 KRNQQ-QLAIMFLDLDRFKWVNDTLGHFYGDELLKHVAQRLSGCLRAQDTLARMGGDEFT 363 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L + A + + P L EREI +++SIG A + T ++K+A+ Sbjct: 364 LLLHDLQQPEDASLVAAKIVDELKRPFLLDEREIFISSSIGIALYPDHGDTIETLIKSAD 423 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMYH K RG N + + S + ++ +L A+E ++ L Y P + + +I+ Sbjct: 424 IAMYHVKWRGKNGYQYYEASMNAMFHKKLSMENELRRAIEKKQIMLHYQPQVDVETRKII 483 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 GLEAL +W HP+ G IS +EF+ +AEE +I +++ +L + + W + Sbjct: 484 GLEALARWHHPELGIISPTEFIPLAEETGLIFSLSEMLLGEACKQMQLWEAAGL-LNFRL 542 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ + + + + I P ++ +E++++ + E + L L K GI Sbjct: 543 ALNVSPQLVEEESFVSKTLSYIQSHHLKPEFFEIEITENLLVRDLENTVAKLKALGKHGI 602 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTII 914 + LDDFGT S LSYL P +K + S + + I+ +I +AK + +I Sbjct: 603 RIALDDFGTCYSSLSYLRQFPIHNIKIDKSFVGDINTHDESVPIITAISGIAKGFKLDLI 662 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 A+ + +K L +MGC+ +Q + PL +I LLK + Sbjct: 663 AEGVETLQQMKTLHKMGCNIMQGYLFSKPLPAQNITTLLKRQ 704 >gi|257093231|ref|YP_003166872.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045755|gb|ACV34943.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 734 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 152/584 (26%), Positives = 266/584 (45%), Gaps = 23/584 (3%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + + + V S DI++ D + + +LG + G Sbjct: 143 REHALMTVRLENSERLHRFLVEQSPDIIYTLDKKGHFIFVNGRVHGLLGYTREELLGK-- 200 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR-IRPMSNSNG-- 507 ++ +H +D+++ R + R E R++ ++ R I + ++ G Sbjct: 201 HYSTIVHPDDQEHARFAFNERRIGDRASTNVEIRLQTKTHRVRHFENRTIVAILSAQGLY 260 Query: 508 ----------DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + G+A DIT++KK+ E I AF D LTG+PNR F DRL L Sbjct: 261 AAAHDGPATRHFMGTSGVARDITDRKKAEETIAFQAFHDLLTGLPNRVLFKDRLAVALTQ 320 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + R VM IDID++K +ND G GD++L S +R L+ D LAR G+ F Sbjct: 321 ARRKGK-RLGVMFIDIDRFKLVNDTYGHHEGDELLKSFAQRARSCLRSGDTLARQGGDEF 379 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L + A A + + P + + T SIG + + S T +L+NA Sbjct: 380 TVLLPDLTSGEDAAVIAAKVLAEVKRPFRIAGLDFFTTVSIGISLFPDSGETPETLLRNA 439 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS-ELYLVYHPIIRLMDEE 734 ++AMY K RG N + + ++ DL A+E + L Y P IR Sbjct: 440 DIAMYQIKGRGKNGYLQYAPEMHSGHSMRITLESDLRAALEGGDQFELHYQPQIRFSQGL 499 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +G+EALI+W HP+ G ++ F+ +AEE +I A++ ++L+R + WR Q + Sbjct: 500 TIGMEALIRWRHPQHGLMAPDTFIPLAEETGLIVALSDWVLDRALGQLAVWRRQ-GFTSL 558 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + IN++ KD N+L E + ++ I + +E+++M E++ ++ +LR Sbjct: 559 QLAINLSPKDFERNDLPERLVGRLAAHAIPADAIDIEITENLLMKEAEKNIDIVKQLRGC 618 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI---AILRSIIPMAKNIET 911 G+ + +DDFGT+ S L+YL P +++K + S + + AI+ +I +A + Sbjct: 619 GLRVAIDDFGTRYSSLNYLRRFPINSIKIDQSFVRDLNPQNQSSTAIIHAISCIAHSFGL 678 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++A+ + E K L+ + CD +Q + PL L Sbjct: 679 RVLAEGVETEAQRKLLSTLDCDDMQGFLFSRPLAAAEFEDFLTA 722 >gi|192360753|ref|YP_001982450.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] gi|190686918|gb|ACE84596.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] Length = 595 Score = 546 bits (1406), Expect = e-152, Method: Composition-based stats. Identities = 145/563 (25%), Positives = 266/563 (47%), Gaps = 12/563 (2%) Query: 403 DGERQSLAV--LGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHIN 459 E LA S D+++ D + + ++G + G + Sbjct: 22 SMEAFLLAALADNSPDLIYAKDTRGRFIFLNKTLMAVMGAQDLQDVLGKTDFDFNT--PD 79 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + N+ + + + + E V + W++ P+ N G + +GI D Sbjct: 80 NAQNYYQDDQTVIQSGQPLINREEPVVDRQSGRIRWLLTSKFPVFNDTGKTIGLVGIGRD 139 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE+K+S E I A D+LT +PNR F L ++ + + V+ ID+D++K Sbjct: 140 ITERKQSEEQIQYLATHDSLTALPNRFMFSKLLAVAIESARRHQR-QLAVLFIDLDRFKN 198 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD +L+++ R L+ DI+ RL G+ F I+L + + A A + Sbjct: 199 INDTLGHDAGDQLLITMANRFRTCLRTSDIVGRLGGDEFVILLPELESHDQAARVAQKIL 258 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P+++ +E VTASIG + ++KNA++AMY AK G N+ + + Sbjct: 259 SAAIQPLDVHGQECRVTASIGICLYPEDAEDEQALMKNADIAMYRAKEEGKNNYQFYSPD 318 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +R+M++ +L A+E E +L Y L +I G+EAL++W HP+ G IS + Sbjct: 319 LKVRSLERLMLENNLRKALERHEFFLHYQAKRNLKTGKIAGVEALVRWQHPELGTISPAH 378 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I + ++L + W+ Q PPI I +N++++ D+ L + Sbjct: 379 FIPLAEETGLIVHLGRWVLRAACTQGVIWQQQGL-PPICIAVNLSARQFFDDNLINDIAN 437 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + ++ +P +++ +E ++M + ER+ +L ++ +G+ L +DDFG S L+++ Sbjct: 438 ALRESGLAPELLEMEITEGMIMQDAERAIRILTGIKALGVRLAIDDFGVGYSSLAHIKRF 497 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P DT+K + S + + AI +II M K + T+IA+ + + L CD Sbjct: 498 PIDTLKVDSSFIRDIPANREDRAITEAIIAMGKTLSLTVIAEGVETQEQENFLRDSACDQ 557 Query: 935 IQDSHVASPLGFNSILKLLKERF 957 Q + + P+ + + Sbjct: 558 TQGYYFSKPVSPEEFTRFMLAHM 580 >gi|254417547|ref|ZP_05031285.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196175645|gb|EDX70671.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 709 Score = 546 bits (1406), Expect = e-152, Method: Composition-based stats. Identities = 143/574 (24%), Positives = 274/574 (47%), Gaps = 17/574 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + + + + + + S + D + + +LGL Sbjct: 126 GIARDITQRKQAEVQLCPENDLLQGIMQTSIAAITVVDTQGNIIFANARSQQVLGLTQSE 185 Query: 445 MHGP--------IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + I ++ + + + + + + AD ++ Sbjct: 186 LVERRYNCPTWQITDFQGGPFPEE----QLPFQQVMVTGQPVFDVQHAIEWADGTRKYLS 241 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + P+ +++G I + DI+ K E + +A DNLT +PNR F++R+ + Sbjct: 242 VNGAPLKDADGVITHIVFSVTDISHHKHVEEQLCHDALHDNLTRLPNRTLFMERVNHAIK 301 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 L+ + + V+ +D+D++K +ND LG VGD +L + R++ + ++ D +A LSG+ Sbjct: 302 LAKRNQDYLFAVLFLDLDRFKVVNDSLGHDVGDQLLTATARQLEKCVRTTDTVAHLSGDE 361 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L + A ++ ++ P NL E+ +ASIG A ++ S ++L++ Sbjct: 362 FTILLEDIKDIKDATRVAERIQATLKAPFNLNNHEVFTSASIGIALSSTGYERSEDILRD 421 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY AK G E F + + + + ++ DL A+E E + Y PI L+ Sbjct: 422 ADIAMYRAKELGKARHEIFDKIMHARALELLRLENDLRRALERQEFEVYYQPITSLVTGM 481 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-P 793 + G EAL++W HP+ G +S +EF+ +AE+ +I + ++L R + W Q P P Sbjct: 482 LTGFEALVRWRHPELGLVSPAEFIPVAEDTGLIIPLGEWVLHEACRQLRMWHTQFPTPEP 541 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++ K + + +L E + ++++T S +KL +ES++M N E +L +LR Sbjct: 542 LKMSVNLSGKQIKEPDLIEQIDHILAETGLDGSFLKLEITESILMENAETVTKMLLQLRA 601 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIET 911 I L++DDFGT S LSYL P +T+K + S ++ K I+R+II +A ++ Sbjct: 602 RNIQLSVDDFGTGYSSLSYLHRFPVNTLKIDRSFVSKMNPKNRNTEIIRTIITLAHSLRM 661 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 +IA+ + + EL + C+ Q + PL Sbjct: 662 DVIAEGVETLEQLTELKLLNCEQGQGYLFSKPLT 695 Score = 99.6 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 6/129 (4%) Query: 402 SDGERQSLA---VLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 +R L + ++VW + TILG ++ W IH Sbjct: 12 KSQKRHQLIPAILNSLDEVVWSASAQTYKLLYINQAAETILGRTLCELYDQPTLWELMIH 71 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +DR + S G E+R+ D + W+ R+ +++ G ++R GIA Sbjct: 72 PDDRQRVQQQFQSL--GESGNQAVEYRIVRPDGEVRWIHNRVCAIADETGTVIRIDGIAR 129 Query: 518 DITEQKKSL 526 DIT++K++ Sbjct: 130 DITQRKQAE 138 >gi|153002714|ref|YP_001368395.1| PAS/PAC and Chase sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151367332|gb|ABS10332.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Shewanella baltica OS185] Length = 1215 Score = 546 bits (1406), Expect = e-152, Method: Composition-based stats. Identities = 161/604 (26%), Positives = 282/604 (46%), Gaps = 16/604 (2%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 + + A+ L+ G +I ++ + + + SG+ + Sbjct: 619 KHYVHKNGQLVAVRLNGALVTGADGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGI 678 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYR 475 D V + I G + + G +L D+ R L+ Sbjct: 679 TIMDANDIIVDVNSAFSQITGYSREEIIGKNCRFLEA-ERTDKGIDPQVRAALEQ----- 732 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 G Q E R + + + + G + YIG DI+E+K S E I A Sbjct: 733 TGFWQGEVWDRHKHGYDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFLAHH 792 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D+LT +PNR S RL ++ A + + VM ID+D +K IND LG VGD +L+ + Sbjct: 793 DSLTLLPNRLSLQSRLE-VVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLLLEV 851 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 RR+ ++ D +ARL G+ F + L S+ N ++A A A+R ++ + + + + Sbjct: 852 ARRLKNIVGDTDTVARLGGDEFVVAL-SDTNHDEVASLAEALRSGLSQTYIINNQALHSS 910 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713 SIG + + + + ++KNA++AMY AK G N+ + F + ++R I+ L Sbjct: 911 PSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAAMNTLITERQQIETGLRQ 970 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 + N EL L Y P I + ++V +EAL++W HP++G ++ F+ IAEE+ MI I + Sbjct: 971 VLANDELRLHYQPQIDIRTGQVVSVEALVRWQHPEFGMVAPDRFIPIAEEIDMIIPIGQW 1030 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +LE + +WR + + +N+++ L + + + ++ K ++L + Sbjct: 1031 VLETAMAQLAAWRAAGATE-LRMAVNLSAHQLRKDSIVADITNVLLKHKLGKGALELEIT 1089 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891 ESV M PE++ LL LR+ GI L +DDFGT S LSYL +P D +K + S + Sbjct: 1090 ESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKDIES 1149 Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 AI + I M+ + T++A+ + E + L+ MGCD +Q + + PL ++ Sbjct: 1150 DPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGFYFSKPLAAEECVR 1209 Query: 952 LLKE 955 ++ Sbjct: 1210 FIQR 1213 Score = 55.7 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 5/207 (2%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 +H + AVL+ + L + + ++ ++ + V + Sbjct: 466 WHIVIYQSYAVLMGDTFSLSLLMLLLAFITCAVVGGMTLVSSGERQRIAEKVTEKTMALS 525 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + F + +R + V V P + G + + Sbjct: 526 KEIARRQAFQATLVQSEQRYRNLFDKAPVGHVLKRLDDGQFVAINPAFEAMTGYSLDEL- 584 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + W + T + R Y+ + Q + + ++ ++ Sbjct: 585 NQLDPW--DLTPKRYQLSETEQLERLKQTRRYGPYQKHYVHKNGQLVAVRLNGALVTGAD 642 Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533 G+ L + I DITEQ++++ + A Sbjct: 643 GEQL-ILFIVEDITEQERTVARVNLLA 668 >gi|56752244|ref|YP_172945.1| hypothetical protein syc2235_c [Synechococcus elongatus PCC 6301] gi|81300668|ref|YP_400876.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942] gi|56687203|dbj|BAD80425.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81169549|gb|ABB57889.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942] Length = 917 Score = 546 bits (1406), Expect = e-152, Method: Composition-based stats. Identities = 164/613 (26%), Positives = 294/613 (47%), Gaps = 17/613 (2%) Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVIL-IGFTVIQHVLATGYFSQGIFSDGERQSL- 409 +GL + + + D++QP V + I+ I + + LA + +R L Sbjct: 303 LGLPLTLNVTVQLDLVQPDGSLRYVEVSIVPIPWQQSKAYLALLTDITSLQQTQQRLKLL 362 Query: 410 --AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFR 465 A S + P + G + + G +L + + + Sbjct: 363 QEATENSPASILITSAEGIIEYVNPAFELMTGYGADEVIGKNPRFLKSGLMSPSFYQDLW 422 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + + E R + W I P+ + G I+ ++ + DITEQK++ Sbjct: 423 ETITA-----GETWRGELYNRRKTGELFWDRTSISPVKDLAGQIIHFVAVKEDITEQKRN 477 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D+LT +PNR LDRL LS ++ VM++D+D++K IND LG Sbjct: 478 RELLDHQANYDSLTDLPNRSLALDRLRQATALSERSNDT-VIVMLLDLDRFKNINDTLGH 536 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 + GD +L + +R+ L ++RL G+ F II + ++ + + + K I+ PI Sbjct: 537 SYGDCLLQEIAKRLRYHLPREITISRLGGDEFLIICPAVKENIHLEKLSQQLLKIISQPI 596 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSD 703 + E+ +TASIG A + + +T +++NA+ AMY AK GGN + F +++ Sbjct: 597 TIEAEELVITASIGVACYPNDGVTPEVLMRNADTAMYSAKRNGGNDFQLFMPTMNAEAHA 656 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R+ ++ L A+E +L + Y PII L D +VGLEAL +W P+ GNI F+ IAEE Sbjct: 657 RIQLETHLRHALEQYQLKVFYQPIISLQDNHVVGLEALARWHDPELGNIPPDRFIPIAEE 716 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I + ++E+ +D+ W+ + N P ++ +N++ + L N + ++ + + Sbjct: 717 TGLIIPLGYRVIEQACQDVAIWQQKYNY-PFWVAVNLSPRQLRSNRFTQITAKILQRHNF 775 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P+ +KL +E +++ N +L L + GI+L LDDFGT S LSYL PF ++K Sbjct: 776 RPNYLKLEVTEQMLLDNTSTIAQMLDTLHRKGIALALDDFGTGYSALSYLRRYPFQSLKV 835 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + + + A++++I+ MA + +A+ + ++ L +GC+Y Q + Sbjct: 836 DQSFLRDIPHSTESCALVKTIVAMAHGLGMQAVAEGVETAEQVEFLKAIGCEYGQGYWFS 895 Query: 942 SPLGFNSILKLLK 954 PL I L Sbjct: 896 RPLPAVEIDSFLA 908 Score = 42.6 bits (99), Expect = 0.29, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 8/164 (4%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + + L L+ Q + E Q L W W Sbjct: 92 IPLTLELQWLADVESEASFLLVTGSCQDSHQNLFLDWQQLQSLEVQRL---SHKVGHWSW 148 Query: 422 D-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 + D P I T +G + + ++L + H + ++ + +G +R Sbjct: 149 NRSQADEFLAPPHIYTQIGRSLHE-PFTLTSFLQHCHSS-LESLQAN-AISLGNQRSHYL 205 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 ++F V+ A W + G++L +G DITE+ Sbjct: 206 WDFPVKTAH-SDRWFECHCLLHHDETGELLSLVGNIRDITEEHH 248 >gi|313107253|ref|ZP_07793449.1| motility regulator [Pseudomonas aeruginosa 39016] gi|310879951|gb|EFQ38545.1| motility regulator [Pseudomonas aeruginosa 39016] Length = 1111 Score = 546 bits (1406), Expect = e-152, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + S + D V + + G + + L Sbjct: 541 QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 598 Query: 457 HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 DR + G + E + + + + I + + GD++ ++ Sbjct: 599 --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 656 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+E+K S I A+ D LT +PNR F DRL T L + + +M +D+D+ Sbjct: 657 FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 715 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631 +K IND LG A GD +L + R+ + D +AR+ G+ F ++L S+ + + Sbjct: 716 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 775 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + +A P L RE VTASIG A S ++KNA+ AMYHAK G N+ Sbjct: 776 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 835 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ +++ +R+ ++ DL A+E E L Y P + G EAL++W HP+ Sbjct: 836 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 895 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + SEF+ + EE+ ++ + ++L + + SW P + +N++++ D + Sbjct: 896 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 954 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + A++ +T P+ ++L +ES++M + + +L L+++G+++ +DDFGT S Sbjct: 955 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1014 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P D +K + S + G E+ I R+II MA ++ +IA+ + + + L Sbjct: 1015 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1074 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 GCD +Q P+ L Sbjct: 1075 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1102 Score = 75.0 bits (183), Expect = 7e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444 + V + + + S AV D ++ D+ RV + + LG Sbjct: 261 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 320 Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + N W +H +D++ + I + V L + R R D ++HW IR + Sbjct: 321 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 380 Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533 + +G + R IG+A DIT +++ A Sbjct: 381 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 419 Score = 67.7 bits (164), Expect = 1e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + T + + +G R + D+++ D + +P + + G + Sbjct: 392 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 451 Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486 L +H +L R + E R Sbjct: 452 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 505 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 AD + + +RI M + + +GIA DI++Q+++ + A Sbjct: 506 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 553 >gi|119899788|ref|YP_935001.1| putative signaling protein [Azoarcus sp. BH72] gi|119672201|emb|CAL96115.1| conserved hypothetical signaling protein [Azoarcus sp. BH72] Length = 726 Score = 546 bits (1406), Expect = e-152, Method: Composition-based stats. Identities = 151/575 (26%), Positives = 260/575 (45%), Gaps = 16/575 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 A SQ + + V S D+++ D P + +LG + Sbjct: 146 RANRAMSQRLRTSERLHRYLVESSPDLIFTLDAEGRFSYLNPRVKALLGYDRNVLMRRP- 204 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-------DNQFHWMIIRIRPMS 503 + + D D T+L + V E R+R ++ + + PM Sbjct: 205 -FTTLVMPEDVDRIATLLYAPVAGPGESFHVELRLRRNRELLAGDSPEWITVALTGIPMP 263 Query: 504 N-SNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 +G + G+A DI+E+K++ E I A+ D LT +PNR F DRL + + Sbjct: 264 AREDGRRGGGLYGVARDISERKRAEEIISFQAYHDQLTRLPNRVLFKDRLELAIAQAQRR 323 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 VM ID+D++K +ND G A GD +L + R+ L+ D LARL G+ F ++L Sbjct: 324 TGA-LAVMFIDVDRFKLVNDTFGHAEGDMLLRGIAARLAGTLRRGDTLARLGGDEFTVLL 382 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 N A + S++ P L + TASIG A + + ++ ++A++AM Sbjct: 383 PDINGPQDAEVIARKILDSLSAPFPLSHGDFRATASIGIALFPRDGDGAEDLTRHADIAM 442 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y K G N F ++ R ++ DL A+E E L Y P I L +VG+E Sbjct: 443 YQVKRSGKNGFRFFDIALNSHYRERIVLENDLRTALERREFELHYQPQISLTQHRVVGME 502 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP G +S + F+ +AEE+ +I I+ ++LE + WR+ + + + +N Sbjct: 503 ALLRWNHPNLGLVSPATFIPVAEEMGLIGDISRWVLEEACGQLARWREAGHN-DLRMSLN 561 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ D ++ + + + PS+++L +ES++M + + LR+ G+S+ Sbjct: 562 LSPHDFDSQDVVTMVTECVERHRLPPSQLELEITESMMMQDAAGVAAKVRGLREAGLSVA 621 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDI 918 +DDFGT S L+YL P T+K + S + I+ +I +A+ +IA+ + Sbjct: 622 IDDFGTGYSALAYLQKFPVSTLKIDRSFVRELEGPNTNPIISAITGIARGFGLQLIAEGV 681 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L +GCD +Q A P L Sbjct: 682 ERSEQAETLRTLGCDVMQGFLYARPAPAAEATAWL 716 >gi|114565155|ref|YP_752669.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114336448|gb|ABI73830.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 696 Score = 546 bits (1406), Expect = e-152, Method: Composition-based stats. Identities = 149/580 (25%), Positives = 274/580 (47%), Gaps = 23/580 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 I +VL + + + + A + W+WD D++ + ++ +LG+ + Sbjct: 120 RIHYVLKANKTIKELTKSKNKLARAQSIAHLGSWEWDFTSDKLDCSDEVYRMLGMQPQEI 179 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 L IH +DR+ + + + + +R+ E+RV + + R + Sbjct: 180 DITFSKLLEIIHPDDREFLKLTVKTALKHRQ-PYDIEYRVLHGSGEIITLHDRTDITYD- 237 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G+ R G +DI+ +KKS + I AF D LT +PNR+ FL +L + + + + + Sbjct: 238 FGEP-RINGTLHDISSRKKSEQEIAYYAFYDTLTDLPNRRKFLLQLDSAIASAKRH-STK 295 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-------------KFPDILARL 612 ++ ID+D +K+IND LG GD++L RI + + LARL Sbjct: 296 LALLFIDLDHFKRINDTLGHKAGDELLCETATRIKSSVRISDELSVGSRVDYENEHLARL 355 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F ++L +A A + +++ P + ++ ++ASIG + + + Sbjct: 356 GGDEFTLLLCELEAFDNVAIIAQRVLDALSKPFVIQGQQTFISASIGISFYPDDGESGDI 415 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENS-ELYLVYHPIIR 729 +L++A+ AMY KH G N + F + DR+ I+ +L A+ + L Y P I Sbjct: 416 LLQHADTAMYEVKHNGKNGYQLFSHEMHKSLMDRLKIEVELREAIRLGDQFVLYYQPQID 475 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 ++ IVG EAL++W+HP G ++ +F+ IAE +I I + L Sbjct: 476 SANDNIVGYEALLRWNHPTRGLLTPIDFLAIAESSGLIIPIGEWALLEACSKAKQIHIAD 535 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 + +N+++ + + ++ + +T P+ ++L +ES ++ N + + LL Sbjct: 536 ANFQ-RMAVNLSALQFNHANIFDHVKRALVETGLPPNLLELEITESAIISNVDEAIALLF 594 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 L+K+G+ L +DDFGT S L+YL P DT+K + S + G +K AI R+I+ +A Sbjct: 595 MLKKLGVKLAIDDFGTGYSSLNYLKSFPIDTLKIDKSFVDGIVSNQKDAAIARTIVQLAL 654 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 N+E + IA+ + + L MGC +Q + PL Sbjct: 655 NLELSTIAEGVEYIEQHELLKAMGCTNLQGYLYSKPLPPE 694 >gi|307728462|ref|YP_003905686.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1003] gi|307582997|gb|ADN56395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1003] Length = 1036 Score = 546 bits (1406), Expect = e-152, Method: Composition-based stats. Identities = 145/556 (26%), Positives = 267/556 (48%), Gaps = 14/556 (2%) Query: 407 QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 QS A+ S + + + + P I G + G L +DR+ Sbjct: 477 QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDPAEVIGHDCRVLQR---DDREQ 533 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + R + R D W + I P+ N+ G I +IG+ ND+T+ Sbjct: 534 EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNAEGVITHHIGVINDVTDL 592 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + E + A D+LT +PNR DRL L ++ V+ +D+D +K +ND Sbjct: 593 MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKG-VAVVFMDLDGFKNVNDS 651 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +VGD +L + R+ + D +AR G+ F I++ + + + +R S++ Sbjct: 652 LGHSVGDRLLGVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRASVS 711 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P+ L E+ V S+G + + + ++K A+LAMY AK G N + ++ S Sbjct: 712 EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771 Query: 703 D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ ++ L A+ +++ L Y P + + +IVG EAL++W P+ G + S F+ + Sbjct: 772 AGARLNLERRLRRALRDNQFLLHYQPQVDIHTGQIVGTEALVRWHDPEGGLVPPSSFIPV 831 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I ++ ++L R +W++ +PP + +N++++ ++ + ++ + Sbjct: 832 AEESGLIGPLSEWVLREACRQNKAWQN-LGLPPARVSVNLSARVFQQRDIARLVMQVLDE 890 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P ++L +ES +M N E + +L L +GI L +DDFGT S LSYL P D Sbjct: 891 TGLEPQYLELELTESAIMRNAEEAVSMLNELSALGIGLAIDDFGTGYSSLSYLKRFPVDR 950 Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S ++ + I +II +A +++ +IA+ + + L CD +Q Sbjct: 951 LKIDRSFVSDIGISGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010 Query: 939 HVASPLGFNSILKLLK 954 + A PL ++I +L+K Sbjct: 1011 YFAKPLSTDAISELMK 1026 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 20/181 (11%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + DI AL ++ V + + ++ Sbjct: 312 LISADISYHALNFMGRAAFFVLAD----DVTEQINAEAEAQRSNQMLETVIDNIPQRIFW 367 Query: 421 WDIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVG 473 D+ + A GLA + G P R + ++ +DR+ T + Sbjct: 368 KDLESRYLGCNMAFARDAGLAYPEQVVGKSDADMPWRAFAELLNAHDREVVETGVPKM-- 425 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + + D + P ++ G ++ +G DITE+K++ + + Sbjct: 426 ----SFEVDVVI---DGVHRTTVTSKLPFTDGEGRVIGVLGSYTDITERKRADLALRLQS 478 Query: 534 F 534 Sbjct: 479 R 479 >gi|218893698|ref|YP_002442567.1| motility regulator [Pseudomonas aeruginosa LESB58] gi|218773926|emb|CAW29740.1| motility regulator [Pseudomonas aeruginosa LESB58] Length = 1415 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + S + D V + + G + + L Sbjct: 845 QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 902 Query: 457 HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 DR + G + E + + + + I + + GD++ ++ Sbjct: 903 --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 960 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+E+K S I A+ D LT +PNR F DRL T L + + +M +D+D+ Sbjct: 961 FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 1019 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631 +K IND LG A GD +L + R+ + D +AR+ G+ F ++L S+ + + Sbjct: 1020 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1079 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + +A P L RE VTASIG A S ++KNA+ AMYHAK G N+ Sbjct: 1080 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ +++ +R+ ++ DL A+E E L Y P + G EAL++W HP+ Sbjct: 1140 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1199 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + SEF+ + EE+ ++ + ++L + + SW P + +N++++ D + Sbjct: 1200 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1258 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + A++ +T P+ ++L +ES++M + + +L L+++G+++ +DDFGT S Sbjct: 1259 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1318 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P D +K + S + G E+ I R+II MA ++ +IA+ + + + L Sbjct: 1319 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1378 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 GCD +Q P+ L Sbjct: 1379 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1406 Score = 75.0 bits (183), Expect = 7e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444 + V + + + S AV D ++ D+ RV + + LG Sbjct: 565 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 624 Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + N W +H +D++ + I + V L + R R D ++HW IR + Sbjct: 625 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 684 Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533 + +G + R IG+A DIT +++ A Sbjct: 685 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 723 Score = 67.7 bits (164), Expect = 1e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + T + + +G R + D+++ D + +P + + G + Sbjct: 696 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 755 Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486 L +H +L R + E R Sbjct: 756 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 809 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 AD + + +RI M + + +GIA DI++Q+++ + A Sbjct: 810 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 857 Score = 39.2 bits (90), Expect = 3.6, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425 GG + I +L+ + +L QG+ + + A+ + V Sbjct: 253 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 312 Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477 P + G++S + LP + D + +L V Sbjct: 313 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDAGGDGETRSELLPLRVRGEPR 372 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 A+ +R G + + D+TE++ + Sbjct: 373 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHA 416 >gi|116052743|ref|YP_793060.1| motility regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115587964|gb|ABJ13979.1| motility regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 1415 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + S + D V + + G + + L Sbjct: 845 QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 902 Query: 457 HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 DR + G + E + + + + I + + GD++ ++ Sbjct: 903 --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 960 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+E+K S I A+ D LT +PNR F DRL T L + + +M +D+D+ Sbjct: 961 FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 1019 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631 +K IND LG A GD +L + R+ + D +AR+ G+ F ++L S+ + + Sbjct: 1020 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1079 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + +A P L RE VTASIG A S ++KNA+ AMYHAK G N+ Sbjct: 1080 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ +++ +R+ ++ DL A+E E L Y P + G EAL++W HP+ Sbjct: 1140 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1199 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + SEF+ + EE+ ++ + ++L + + SW P + +N++++ D + Sbjct: 1200 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1258 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + A++ +T P+ ++L +ES++M + + +L L+++G+++ +DDFGT S Sbjct: 1259 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1318 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P D +K + S + G E+ I R+II MA ++ +IA+ + + + L Sbjct: 1319 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1378 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 GCD +Q P+ L Sbjct: 1379 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1406 Score = 75.0 bits (183), Expect = 7e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444 + V + + + S AV D ++ D+ RV + + LG Sbjct: 565 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 624 Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + N W +H +D++ + I + V L + R R D ++HW IR + Sbjct: 625 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 684 Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533 + +G + R IG+A DIT +++ A Sbjct: 685 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 723 Score = 67.7 bits (164), Expect = 1e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + T + + +G R + D+++ D + +P + + G + Sbjct: 696 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 755 Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486 L +H +L R + E R Sbjct: 756 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 809 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 AD + + +RI M + + +GIA DI++Q+++ + A Sbjct: 810 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 857 Score = 39.2 bits (90), Expect = 3.4, Method: Composition-based stats. Identities = 33/282 (11%), Positives = 74/282 (26%), Gaps = 43/282 (15%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425 GG + I +L+ + +L QG+ + + A+ + V Sbjct: 253 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 312 Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477 P + G++S + LP + D + +L V Sbjct: 313 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDAGGDGETRSELLPLRVRGEPR 372 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 A+ +R G + + D+TE++ +L + Sbjct: 373 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHALGVLEET----- 423 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 R+ + D + + V+D+ ++ G+ + L Sbjct: 424 ------RRRYQDIFE----------GVGVALCVLDLSALRQALVEQGLDSCAALRAWLAG 467 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 E + +L R+ + + Sbjct: 468 ---EPGRQQALLERIRITEINDVSRRLLQIESTEQAWQRLLD 506 >gi|315266684|gb|ADT93537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS678] Length = 920 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 142/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA S + V D + I G + G R + H Sbjct: 367 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 424 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D+ F + ++ + G+ E R + I I + + GD+ ++ + DI Sbjct: 425 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 482 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK++ + A+ D LT +PNR F+ +L + + NL+ ++ID+D +K I Sbjct: 483 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 541 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ + D+L+R+ G+ F ++ +N+ +R+ Sbjct: 542 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQ 601 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TAS+G + + + + +L+NA+ AMY AK+ G N+ + S Sbjct: 602 VFEQPFIVSTGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 661 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L+ + VG EAL++W P+ G IS + Sbjct: 662 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAV 721 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I I L++LE R + W + I +N+A + L + + ++ Sbjct: 722 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 780 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T ++L +ESV+M NP+ + L L +GI L++DDFGT S L+YL + Sbjct: 781 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 840 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ IIA+ + + L + CD Sbjct: 841 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 900 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q + P + L Sbjct: 901 AQGYLFSRPQLPEDLDAFLS 920 >gi|291613862|ref|YP_003524019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291583974|gb|ADE11632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 923 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 158/561 (28%), Positives = 282/561 (50%), Gaps = 13/561 (2%) Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + LA SG+ + D V + G S + G L Sbjct: 364 QEEATLRLAARVFDSSGEAILITDENVRVVAVNHSFVAMSGYRSEEVMGKNPRMLSS-GR 422 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D + +R + D + G Q E + + + + I + + +G ++ YI IA D Sbjct: 423 HDAEFYRAMWDDINQH--GYWQGEIWDKHKSGRIYPKWMSITAVRDEHGKVVNYISIARD 480 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 TEQ ++ + I A+ D LTG+PNR DRL ++ ++ D + + +++ +D+D++K Sbjct: 481 TTEQTEAEKNIHFLAYYDVLTGLPNRTLLRDRLGQMIAVAHRDKH-QFSLIFLDLDRFKY 539 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G +VGD +L S+ RI + ++ D +ARL G+ F ++L E + A + Sbjct: 540 INDSMGHSVGDRLLQSVALRIQDCVREGDTVARLGGDEFIVLLR-EAGESAASVVAQKLL 598 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++A P +L + I+ ASIG + + + ++KNA++AMY AK G N+ + F Sbjct: 599 IALATPYDLDGQVISTQASIGISIYPDQAQDADTLIKNADMAMYRAKEEGRNNFQFFVPE 658 Query: 699 SFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + +++DL LA+E EL+L Y P L + G+EALI+WDHP G +S +E Sbjct: 659 MNFRVDLLFSMEKDLRLALERGELFLQYQPQADLASGTLSGVEALIRWDHPVKGQVSPAE 718 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I AI ++L + WR M + I +N++ + L +L E +++ Sbjct: 719 FIPVAEETGQIVAIGEWVLRTACSQMAEWRK-TGMHDLTIAVNLSIRQLRQPDLAELIKS 777 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T ++L +E ++MG+ + + L ++ +G+ L++DDFGT S L+YL + Sbjct: 778 VLLETGLDARHLELEITEGIMMGDNQAAFRFLSEMQDLGVQLSIDDFGTGFSSLNYLKQM 837 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P + +K + S + E AI+RSII + + +IA+ + + + L GCD Sbjct: 838 PVNKLKIDQSFIRDIETDEGDAAIIRSIISLGHRLNLRVIAEGVETQEQLDFLRIRGCDE 897 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + PL ++ +K Sbjct: 898 IQGYFYSRPLLAEDFMRFVKA 918 Score = 90.8 bits (224), Expect = 1e-15, Method: Composition-based stats. Identities = 48/371 (12%), Positives = 114/371 (30%), Gaps = 28/371 (7%) Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLI---------PTFAMAWVVLG 230 + + + G G+A A+ + Y + R + + L Sbjct: 16 EFFANLGTELTPLGAF-GLACGNALEALLGYYLLRHRVSFNERLSTIRDVGLLFVFGALA 74 Query: 231 --YISIDFGFLSKLVNLPSGELLIWRACSEIAL--SSSLIIFLFMYLHWNRWHAKVG--- 283 ++ G ++ + + + +F L W R + V Sbjct: 75 SPLVAALNGAWWIKLSTGESWQDYIHTVQYWWMGDALGIALFTTTILAWTRGDSIVWSYE 134 Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343 + +A + +L + + + L +L + ++ + + Sbjct: 135 RVRRGVLAAVVLLLTCWILFLDLPGRLLEFGLFFPLLIWIALNFDLRCVSGALLLIFLSS 194 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + + ++ ++ + L G L V ++ + Sbjct: 195 ILGLLSLGDLRGSSLDTLVNFVWLYNLLFGLTALSVAVLNA-------QHRRSEHALKLS 247 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + + A G W DIV + + + + I G+A G+ +L ++H +DRD Sbjct: 248 EDNLNRAQSIVGIGSWHLDIVNNCLQWSDETYHIFGVAEGTPL-NYEVFLEHVHADDRDL 306 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + R E R+ + + W+ + +++G+ + IG DIT K Sbjct: 307 VNRTWQQAL--LRQPYDIEHRIL-VNGEIRWVREKANLDFDAHGNAVYAIGTVRDITRYK 363 Query: 524 KSLEGILCNAF 534 + + A Sbjct: 364 QEEATLRLAAR 374 >gi|160874448|ref|YP_001553764.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160859970|gb|ABX48504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS195] Length = 921 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 142/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA S + V D + I G + G R + H Sbjct: 368 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 425 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D+ F + ++ + G+ E R + I I + + GD+ ++ + DI Sbjct: 426 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 483 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK++ + A+ D LT +PNR F+ +L + + NL+ ++ID+D +K I Sbjct: 484 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 542 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ + D+L+R+ G+ F ++ +N+ +R+ Sbjct: 543 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQ 602 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TAS+G + + + + +L+NA+ AMY AK+ G N+ + S Sbjct: 603 VFEQPFIVSTGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 662 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L+ + VG EAL++W P+ G IS + Sbjct: 663 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAV 722 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I I L++LE R + W + I +N+A + L + + ++ Sbjct: 723 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 781 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T ++L +ESV+M NP+ + L L +GI L++DDFGT S L+YL + Sbjct: 782 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 841 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ IIA+ + + L + CD Sbjct: 842 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 901 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q + P + L Sbjct: 902 AQGYLFSRPQLPEDLDAFLS 921 >gi|34496829|ref|NP_901044.1| hypothetical protein CV_1374 [Chromobacterium violaceum ATCC 12472] gi|34102684|gb|AAQ59049.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 842 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 147/572 (25%), Positives = 268/572 (46%), Gaps = 14/572 (2%) Query: 392 ATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 A + + LA + + + D + P A I G + G Sbjct: 270 ALRQRDEALQQSRHSLLLADKVFESTMEGIIITDRNGVIQSVNPAFARITGYSREEALGQ 329 Query: 449 IRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + ++ + S + R GR Q E R + + I + ++ G Sbjct: 330 TPALLKSGKQP--PEFYQQLWRSLL--RDGRWQGEVVNRRKGGLLYTEHLSITAIRDAAG 385 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + L Y+ + +DIT++K++ E + A D LT +PNR FL++L ++ + R Sbjct: 386 ECLHYVAVFSDITQRKQAEERLHFLANHDALTSLPNRTLFLEKLQGAVERAGL-GGQRLA 444 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ ID+D++K +ND LG GD +L+ + R++ L + +ARL G+ F ++L Sbjct: 445 LLFIDLDRFKLVNDTLGHYAGDQLLIHIARQLQSRLLPGETVARLGGDEFTLLLEGVGGE 504 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++A A AM +I + +++ ++ASIG + + + +L +A+ AMY AK Sbjct: 505 AQVAARAQAMLDAITELSGVAGQQMFISASIGISMFPLDGRDADTLLVHADTAMYRAKDG 564 Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + + +R+ ++ L A+ EL L Y P + L +++G EAL++W Sbjct: 565 GKNGFQFYTPDMNARALERLKLEYSLHRALAQQELELWYQPKVALDSGQLIGAEALLRWR 624 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G + F+ IAEE +I I ++LE D WR+ P + +N++ + L Sbjct: 625 HPELGLVPPDRFIPIAEESALIAQIGAWVLETACADARRWRNAGLAPG-RLAVNVSGRQL 683 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + ++ +++ ++L +ESVVM + L RL+K+G+ L++DDFGT Sbjct: 684 KHGDFVAELEQALARHGLDSDALELEITESVVMEDAGGMVDTLFRLQKLGMYLSIDDFGT 743 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL +P +K + S + AI R+II +A+++ ++A+ + E Sbjct: 744 GYSSLSYLKRLPVRGLKIDRSFIDDLHCDGDDAAITRAIISIARSLGLDVVAEGVEEEAQ 803 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GC+ Q + PL ++ LL Sbjct: 804 RRFLLEQGCNCAQGYLFSKPLPRDAYEALLSR 835 >gi|300864011|ref|ZP_07108917.1| PAS fold family (modular protein) [Oscillatoria sp. PCC 6506] gi|300337988|emb|CBN54063.1| PAS fold family (modular protein) [Oscillatoria sp. PCC 6506] Length = 966 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 159/597 (26%), Positives = 292/597 (48%), Gaps = 26/597 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-AS 442 + + + + E+ + + ++ ++ P ++ I G + Sbjct: 369 LGTLTDITDRKQAEESLKRAEEKYRSIFENAIEGIFQSTPEGRYLSANPALSKIYGYNSP 428 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + I++ +++N R V + ++E V AD W+ R + Sbjct: 429 EELIEQIQDIKTQVYVN--PRRRAEFVREVETKCSISEFESEVYCADGSTIWISENARTV 486 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 N+NG++L Y G DIT +K + E +L +A D LTG+PNR F+DRL ++L Sbjct: 487 RNNNGELLYYEGTVEDITVRKMAEEKLLHDALHDTLTGLPNRALFMDRLGHAIELGKRRP 546 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + V+ ID+D++K +ND LG VGD +L+++ +R+ L+ D +ARL G+ F I+L Sbjct: 547 EILFAVLFIDLDRFKVVNDSLGHLVGDQLLIAIAQRLKICLRTGDTVARLGGDEFAILLE 606 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS------------------WT 664 + ++ A ++ +A P +L +I +ASIG Sbjct: 607 NIKDASDATIIAERVQNELAAPFHLSAHKIFSSASIGIVCSGLAPFRDGEATTLPHLQCP 666 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYL 722 ++L++A+ AMYHAK +G E F +S + ++ DL AVE E L Sbjct: 667 ILYDRPEDLLRDADAAMYHAKAQGKARHEIFDMSMHTRAVALLELENDLRRAVERQEFQL 726 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y PI+ L++ +I G E L++W HP+ G ++ +EF+ +AEE +I I +ML + Sbjct: 727 YYQPIVSLVNGKISGFEVLLRWQHPQRGLVTPAEFIRVAEETRLIVPIGWWMLRSACHQM 786 Query: 783 ISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W+ + PP+ I +N++++ +L + ++ ++ +T +P +KL +ESV+M N Sbjct: 787 YQWQQEFPTDPPLTISVNLSNQQFTQPDLIDQIRKILLETDLNPRSLKLEITESVIMDNA 846 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899 E + LL +LR + I L +DDFGT S LS L P D +K + + ++ E AI+ Sbjct: 847 ESAAALLLQLRALEIQLYIDDFGTGYSSLSRLHSFPTDALKIDRAFVSRMADDEGNEAIV 906 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++I+ +A ++ +IA+ + + +L + C+Y Q + P+ N+ L+ + Sbjct: 907 QTILILAGHLGMDVIAEGVETAEQLAQLRALQCEYGQGYFFSKPIDCNAATVLVAAQ 963 Score = 98.9 bits (245), Expect = 4e-18, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 4/147 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + ++ + + + + R ++ + + + P + GL Sbjct: 241 IFLQGLMLDITESKVTERALQESEYRYYTLAKMLPVGIFRTETAGECLYVNPRFCEMAGL 300 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 W+ +H +DRD T + + + E+R + ++ W+ + Sbjct: 301 TPAEALKS--GWVRSLHPDDRDRVLTAWYRAITEKM-PFKLEYRFQ-KGSEVTWVYCQAV 356 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527 P NG++ Y+G DIT++K++ E Sbjct: 357 PEVEKNGEVTGYLGTLTDITDRKQAEE 383 Score = 78.8 bits (193), Expect = 4e-12, Method: Composition-based stats. Identities = 31/267 (11%), Positives = 73/267 (27%), Gaps = 18/267 (6%) Query: 280 AKVGYITFSGIACIAILFCMS--FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 + + + + + F ++ Y +T+ +I + Sbjct: 6 PFLSNGIPAYLLGLLVTFAIALIAYTNKGLLKSTTVTVGTISDRSFAIGNFWTSDRLVLP 65 Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397 L P+ L + +D+++ L + + T+ Sbjct: 66 RQLPPSKTLAAWQCNSQEESSA--TGSDLVKTGAQSLLAQEIAAVNLTI----EEQQRLE 119 Query: 398 QGIFSDGERQSLAVLGSGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + + + + R+ + I +LG + Sbjct: 120 AALRTSEAKYRALSEQIAAVTYIAPLERPSHRLYISSQIVKLLGYSLEEWKACPNLLSKI 179 Query: 456 IHINDRDNFR---TILDSFVGYRRG----RLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +H +DRD + + E+R A + + W R + + Sbjct: 180 LHPDDRDRLLVEDATRRAASVGKESINDQSFTVEYRAIAKNGRVLWFCDRAVAVRDEVNQ 239 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQ 535 + G+ DITE K E L + Sbjct: 240 SIFLQGLMLDITESK-VTERALQESEY 265 >gi|15599797|ref|NP_253291.1| motility regulator [Pseudomonas aeruginosa PAO1] gi|107099735|ref|ZP_01363653.1| hypothetical protein PaerPA_01000753 [Pseudomonas aeruginosa PACS2] gi|254238656|ref|ZP_04931979.1| motility regulator [Pseudomonas aeruginosa C3719] gi|9950851|gb|AAG07989.1|AE004874_2 motility regulator [Pseudomonas aeruginosa PAO1] gi|126170587|gb|EAZ56098.1| motility regulator [Pseudomonas aeruginosa C3719] Length = 1415 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + S + D V + + G + + L Sbjct: 845 QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 902 Query: 457 HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 DR + G + E + + + + I + + GD++ ++ Sbjct: 903 --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 960 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+E+K S I A+ D LT +PNR F DRL T L + + +M +D+D+ Sbjct: 961 FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 1019 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631 +K IND LG A GD +L + R+ + D +AR+ G+ F ++L S+ + + Sbjct: 1020 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1079 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + +A P L RE VTASIG A S ++KNA+ AMYHAK G N+ Sbjct: 1080 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ +++ +R+ ++ DL A+E E L Y P + G EAL++W HP+ Sbjct: 1140 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1199 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + SEF+ + EE+ ++ + ++L + + SW P + +N++++ D + Sbjct: 1200 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1258 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + A++ +T P+ ++L +ES++M + + +L L+++G+++ +DDFGT S Sbjct: 1259 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1318 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P D +K + S + G E+ I R+II MA ++ +IA+ + + + L Sbjct: 1319 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1378 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 GCD +Q P+ L Sbjct: 1379 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1406 Score = 75.0 bits (183), Expect = 7e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444 + V + + + S AV D ++ D+ RV + + LG Sbjct: 565 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 624 Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + N W +H +D++ + I + V L + R R D ++HW IR + Sbjct: 625 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 684 Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533 + +G + R IG+A DIT +++ A Sbjct: 685 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 723 Score = 67.7 bits (164), Expect = 1e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + T + + +G R + D+++ D + +P + + G + Sbjct: 696 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 755 Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486 L +H +L R + E R Sbjct: 756 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 809 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 AD + + +RI M + + +GIA DI++Q+++ + A Sbjct: 810 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 857 Score = 39.2 bits (90), Expect = 3.6, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425 GG + I +L+ + +L QG+ + + A+ + V Sbjct: 253 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 312 Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477 P + G++S + LP + D + +L V Sbjct: 313 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDAGGDGETRSELLPLRVRGEPR 372 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 A+ +R G + + D+TE++ + Sbjct: 373 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHA 416 >gi|254244505|ref|ZP_04937827.1| motility regulator [Pseudomonas aeruginosa 2192] gi|126197883|gb|EAZ61946.1| motility regulator [Pseudomonas aeruginosa 2192] Length = 1415 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + S + D V + + G + + L Sbjct: 845 QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 902 Query: 457 HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 DR + G + E + + + + I + + GD++ ++ Sbjct: 903 --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 960 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+E+K S I A+ D LT +PNR F DRL T L + + +M +D+D+ Sbjct: 961 FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 1019 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631 +K IND LG A GD +L + R+ + D +AR+ G+ F ++L S+ + + Sbjct: 1020 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1079 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + +A P L RE VTASIG A S ++KNA+ AMYHAK G N+ Sbjct: 1080 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ +++ +R+ ++ DL A+E E L Y P + G EAL++W HP+ Sbjct: 1140 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1199 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + SEF+ + EE+ ++ + ++L + + SW P + +N++++ D + Sbjct: 1200 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1258 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + A++ +T P+ ++L +ES++M + + +L L+++G+++ +DDFGT S Sbjct: 1259 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1318 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P D +K + S + G E+ I R+II MA ++ +IA+ + + + L Sbjct: 1319 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1378 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 GCD +Q P+ L Sbjct: 1379 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1406 Score = 74.6 bits (182), Expect = 7e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444 + V + + + S AV D ++ D+ RV + + LG Sbjct: 565 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 624 Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + N W +H +D++ + I + V L + R R D ++HW IR + Sbjct: 625 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 684 Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533 + +G + R IG+A DIT +++ A Sbjct: 685 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 723 Score = 67.7 bits (164), Expect = 1e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + T + + +G R + D+++ D + +P + + G + Sbjct: 696 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 755 Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486 L +H +L R + E R Sbjct: 756 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 809 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 AD + + +RI M + + +GIA DI++Q+++ + A Sbjct: 810 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 857 Score = 39.2 bits (90), Expect = 3.6, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425 GG + I +L+ + +L QG+ + + A+ + V Sbjct: 253 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 312 Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477 P + G++S + LP + D + +L V Sbjct: 313 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDAGGDGETRSELLPLRVRGEPR 372 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 A+ +R G + + D+TE++ + Sbjct: 373 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHA 416 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] gi|133738068|emb|CAL61113.1| putative two-component response regulator [Herminiimonas arsenicoxydans] Length = 818 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 153/531 (28%), Positives = 270/531 (50%), Gaps = 10/531 (1%) Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + TI G +S G +L + D+ + + R + R Sbjct: 286 IYVNGAFETITGYSSEEAIGRNCKFLQGMD-TDQPELGKLRAAIREQRPASVLL--RNYH 342 Query: 488 ADNQFHWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D + I P+S+++G + ++G+ D+T+ K+ E + A D LTG+ NR Sbjct: 343 KDGSMFLNELYIAPVSDTSGGAVGHFVGVLYDVTQIKRYQEDLEHQANYDTLTGLANRNL 402 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 +R L + D+ +++ ID+D +K +ND +G GD+++ ++ R+ ++ Sbjct: 403 LNERTQQALLQARRHDHF-LSLVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQTCVRDG 461 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D +AR+ G+ F ++L +++ S A ++ + P+ + +EI VT S+G A + Sbjct: 462 DTVARIGGDEFVLLLTNQSVSDSNAGVMQRIQAELIKPMWIRGQEIVVTCSMGVARFPED 521 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724 S +L NA+ AMY AK G N+ + + + +R+ ++ DL A++N EL+LVY Sbjct: 522 GEDSESLLANADTAMYRAKSSGRNNFQFYTKEMNATSGERLSLESDLWHALKNDELFLVY 581 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P I L D ++G+EALI+W HPK G I+ +F+ +AE +I I +++LE R + Sbjct: 582 QPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMAECNGLIIPIGIWVLETACRHNLQ 641 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 + + PPI + IN++++ L D E +Q++I P ++L +ES+VM N E Sbjct: 642 LQKEGL-PPIRVAINLSARQLSDRNFVESVQSVIEAIGLDPHYLELEVTESMVMHNVEDV 700 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSI 902 + L L K+GI L+LDDFGT S L+YL P D +K + S + S I ++I Sbjct: 701 VVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLKIDQSFIFNCDSDPGDAIIAQTI 760 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I +A ++ +IA+ + + L + GCD Q ++ PL F+ + L Sbjct: 761 IALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFISRPLTFDDLRMFL 811 Score = 38.4 bits (88), Expect = 5.9, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 38/141 (26%), Gaps = 4/141 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 ++ A + + + D + + + G Sbjct: 121 VEQRDARRRIETELLESNLMFRTFMENLPGAAFIKDQDGRYLYCNHGLDKAFNVEKGCSI 180 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G + + + R + + + E + +W+ P+ N Sbjct: 181 GKLDT--ELVPLEVAYKLREMEARVLKAGTALQELEV-MSMPSGASYWLS-TKFPLVGEN 236 Query: 507 GDILRYIGIANDITEQKKSLE 527 D GIA DITE+ K + Sbjct: 237 SDSQHVGGIAIDITERMKVEQ 257 >gi|291614778|ref|YP_003524935.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291584890|gb|ADE12548.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 1135 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 141/552 (25%), Positives = 266/552 (48%), Gaps = 16/552 (2%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFV 472 + + + D R+ + I G ++ + G R +H D + + ++ V Sbjct: 584 AQEGMLITDADRNILRVNRAFTDITGYSAEEVIGKNPRILSSGLH--DSHFYAAMWNTLV 641 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G + E + + + + + I + ++ G ++ Y+ +DIT K + + I Sbjct: 642 A--TGAWKGEIWNKRKNGEVYPERLAITAVKDARGVVINYVASLSDITLHKAAEDEIRSL 699 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 AF D LTG+PNR+ +DRL L S+ ++ +D+D +K +ND LG +GD +L Sbjct: 700 AFFDPLTGLPNRRLLMDRLQQALVASSRSGKA-GALLFLDLDNFKNLNDTLGHDIGDLLL 758 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINL 647 + +R+ ++ D +AR+ G+ F ++L + + + ++ P +L Sbjct: 759 QQVAQRLKNCVREGDTVARIGGDEFVVMLEDLSAESIEAASQTEAVGWKIISTLNKPYHL 818 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706 + E+ T SIG + S ++ K A++AMY AK G N + F + Sbjct: 819 EKFEVHSTPSIGATLFDSRPQIIDDLFKQADIAMYQAKKAGRNTMRFFDPQMQDTLNTRT 878 Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ DL ++E E L Y + VG EALI+W HPK G +S +EF+ +AEE Sbjct: 879 ALEADLRKSIERREFNLFYQIQVD-EMNRPVGAEALIRWIHPKRGMVSPAEFIPLAEETD 937 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I L++L+ + +W++ + + +N+++K ++ ++ + K P Sbjct: 938 LILNIGLWVLQEACAQLKTWQNNPLTRNLVLAVNVSAKQFRQSDFATQVRVFVEKYAIDP 997 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S++KL +ES++ N E + L++ L++IG+ +LDDFGT S L Y+ +P + +K + Sbjct: 998 SKLKLELTESMLQENIEDTILIMNALKEIGVQFSLDDFGTGYSSLQYIKKLPLNQLKIDQ 1057 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + AI+R+II MAK+++ +IA+ + + + L GC + Q + P Sbjct: 1058 SFVHDLDFDRDDKAIVRAIIAMAKSLQLDVIAEGVETQEQRQLLLNKGCTHFQGYLFSKP 1117 Query: 944 LGFNSILKLLKE 955 L LL+ Sbjct: 1118 LPIREFDALLER 1129 Score = 83.5 bits (205), Expect = 2e-13, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 8/171 (4%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFS-QGIFSDGERQSLA----VLGSGDIVWDWD 422 A V+I +L+ +++ + + ER S + + D Sbjct: 288 AEAKTLLAVVIPVLLAISLLAMAFYRRLAQNEAQRREAERLQRINATVFDSSAEAIIITD 347 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + ++ P I G + + G L + +R + ++ + R Q E Sbjct: 348 LNANIISVNPAFTQITGYSPEDVLGKNPRILSS-GQQSKGFYRELWEALL--RDNFWQGE 404 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 R + + + + I + G + +IG+ DITE+K+ + + Sbjct: 405 LVNRHKNGSLYNIHLSISASRDGTGQLQHFIGVTTDITERKQHESELRMES 455 Score = 66.9 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 5/155 (3%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + V + + + E+ + + + D + D + + + ++LG Sbjct: 431 LQHFIGVTTDITERKQHESELRMESEKNMVLLRNASDGIHILDPDGNIIEASDSFCSMLG 490 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 M G + + + GR Q+E R R D + I Sbjct: 491 YQRNEMLGMNVCQWDADFSD--PRIVKLFRDQFTNK-GRTQFETRHRRKDGTVIDVEISG 547 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 P+ +G + + DITE+KK I A Sbjct: 548 YPLQ-LHGKPALF-NSSRDITERKKIEVEIQIAAT 580 >gi|126173489|ref|YP_001049638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS155] gi|125996694|gb|ABN60769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS155] Length = 921 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 142/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA S + V D + I G + G R + H Sbjct: 368 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 425 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D+ F + ++ + G+ E R + I I + + GD+ ++ + DI Sbjct: 426 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 483 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK++ + A+ D LT +PNR F+ +L + + NL+ ++ID+D +K I Sbjct: 484 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 542 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ + D+L+R+ G+ F ++ +N+ +R+ Sbjct: 543 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQ 602 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TAS+G + + + + +L+NA+ AMY AK+ G N+ + S Sbjct: 603 VFEQPFIVSTGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 662 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L+ + VG EAL++W P+ G IS + Sbjct: 663 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAV 722 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I I L++LE R + W + I +N+A + L + + ++ Sbjct: 723 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 781 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T ++L +ESV+M NP+ + L L +GI L++DDFGT S L+YL + Sbjct: 782 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 841 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ IIA+ + + L + CD Sbjct: 842 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 901 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q + P + L Sbjct: 902 AQGYLFSRPQLPEDLDAFLS 921 >gi|312128780|ref|YP_003993654.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Caldicellulosiruptor hydrothermalis 108] gi|311778799|gb|ADQ08285.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caldicellulosiruptor hydrothermalis 108] Length = 1016 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 144/569 (25%), Positives = 271/569 (47%), Gaps = 11/569 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + E+ V D +W+ D ++ + + + + WL + Sbjct: 446 SEMLLEEKEKYKFLVENVSDCIWEIDFQEKKIEFYGRLKDLFDIDAIKSKNDFSAWLEFF 505 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H +DR L + L++E R+R + + W+ ++ + N + I + Sbjct: 506 HEDDRSTVFKKLQDAILLHEENLEFEARIRDKNGNWRWISSHVQILYNEEDKPEKIIAVN 565 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D T +K+ I A+ D LT +PNR+ F +RL +++ + D+ + V++IDID + Sbjct: 566 IDWTAKKEYEHKIEYIAYYDALTSLPNRKLFEERLESLIKKA-EDEKTQGAVVLIDIDNF 624 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633 K IND+ G GD+ L ++ ++ E L+ AR+ G+ F +IL ++ + Sbjct: 625 KDINDLYGHEAGDEYLKAVGEKVLEYLENLNLKTFFARVGGDEFAVILHGLAKKEEVIEV 684 Query: 634 AIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + I + E I +AS+G + + + E+ +N ++A+ AK G N Sbjct: 685 CTQLLSIFESEIYIQKLEGHIFASASMGISFYPDDGRSVKEIFRNVDMALSSAKENGKND 744 Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F + ++ I++ L A+E + L Y P+I L D EI +EAL++W P+ Sbjct: 745 FQIFMPFMLMKNLKKIEIEKSLKKAIEADQFELYYQPVINLKDMEIHSVEALLRWVLPEK 804 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS EF+ +AEE +I I ++E+ D+ +W + + + IN++++ Sbjct: 805 GIISPLEFIPVAEESGLIVKIGEMVIEKAFSDLKNWERKGISY-LHMAINLSARQFKTKF 863 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 +Q LI + P +I +E+ + N + S +L L ++GI +DDFGT S Sbjct: 864 FENMVQKLIEQYGVDPKKISFEITETGAVENFDVSLKILSFLCQLGIRFLIDDFGTGYSS 923 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P VK + S ++ +++ AI+ II MA ++ ++A+ + + +++ L Sbjct: 924 LIYLKKLPIGGVKIDRSFISEIEFSKENRAIVEGIILMAHKLDLKVVAEGVETKRELEIL 983 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD+ Q + PL + KLL R Sbjct: 984 KEIGCDFAQGYLFSKPLPKTQVEKLLLAR 1012 Score = 65.4 bits (158), Expect = 5e-08, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 43/145 (29%), Gaps = 2/145 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + G + + L + IV ++ + + + G S Sbjct: 277 SMAIFVMTRINRRLEHGKQAYEKYAQLLAENANAIVLTLNLNGEIIYFNKFAEQLTGYKS 336 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G W + R + L + + +E + + W++ + Sbjct: 337 EEVVGKK--WTDIFIPSHRREYIENLFKRIAEEKVLNDHENEIITKNGDIRWILWNNTLI 394 Query: 503 SNSNGDILRYIGIANDITEQKKSLE 527 + + I DIT+ KK+ + Sbjct: 395 ESPYLNEPLIISTGLDITQIKKTQQ 419 >gi|149180252|ref|ZP_01858757.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1] gi|148852444|gb|EDL66589.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1] Length = 706 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 162/586 (27%), Positives = 288/586 (49%), Gaps = 12/586 (2%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 I ++ + F + + Q + E+ S D ++ D Sbjct: 120 IYTEIQSYMEIICDKRVLFGSVIDITEQIEAQQMLEESNEKYKSLFESSPDAMYSMDENG 179 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + P ++G ++ M G ++P + D +S E + Sbjct: 180 ILIDVNPAGEQLIGYSTKEMKGMP--FMPLVASEDLPEAIKHFESAKVGE--PSSAELVL 235 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 D+Q + PM NG+I+ G A DIT++K E + AF D LT +PNR+ Sbjct: 236 IRKDSQKIHVEATHYPMK-VNGEIVGTYGTARDITKKKLYDEKMRELAFYDPLTRLPNRK 294 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F DRL I+ L+ ++ L +V+ +D+D++K IND +G +GD+ L + R+ + ++ Sbjct: 295 LFEDRLGQIIKLAKIEEKL-FSVIFLDLDRFKFINDSMGHHIGDEFLKLVADRLKQSIRS 353 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D L+RL+G+ F I+L + A + +S+A P + ++V+ASIG A T Sbjct: 354 TDTLSRLAGDEFTILLPDIT-EEDVISIAERINQSLAEPFQVSGHWLSVSASIGIAFSTG 412 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLV 723 + SE++ A+ AMY K + + ++I+ DL LAV N+EL L Sbjct: 413 KNVGVSEIIHRADTAMYQTKKFRRSQYTIYSDEMEVDTSYNLIIERDLPLAVINNELELY 472 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI+ L E+++ +EALI+W HP+ G ++ ++F+ +AEE I I ++LE Sbjct: 473 YQPIMNLESEKVIAMEALIRWHHPELGMVAPNDFIRVAEECGQIIPIGNWVLETACIQNK 532 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+D PP + +N+++K L + + ++ +++K+ ++L +ES+++ + E Sbjct: 533 KWQDS-GKPPFKVAVNVSTKQLQQYDFVDSVKKVLAKSGLEAKWLELEVTESILLDDVEE 591 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901 + L RLR IG+S+++DDFGT + LSYL PFDTVK + S + + I + Sbjct: 592 IKESLTRLRGIGVSISIDDFGTGYTSLSYLRQYPFDTVKIDKSFIDDISRDLHGKRITSA 651 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 II +A ++ ++A+ I GE ++ L R CD Q + + P+ + Sbjct: 652 IISLAHSLNMNVVAEGIEGETELIFLKREKCDAGQGYYFSKPIPVH 697 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 3/124 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + V+ + + +LG + + IH D + Sbjct: 35 FESLIEKAPIGVYILE-EGSVSYINNYYSDLLGYTREEFTQGLVSLQQIIHPEDYPTVQA 93 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 ++ + +Y R + + I+ + +L G DITEQ ++ Sbjct: 94 RIEGRNQGNKKVERYRVRNINKQGKLIYTEIQSYMEIICDKRVLF--GSVIDITEQIEAQ 151 Query: 527 EGIL 530 + + Sbjct: 152 QMLE 155 >gi|172036436|ref|YP_001802937.1| hypothetical protein cce_1521 [Cyanothece sp. ATCC 51142] gi|171697890|gb|ACB50871.1| unknown [Cyanothece sp. ATCC 51142] Length = 724 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 151/574 (26%), Positives = 278/574 (48%), Gaps = 9/574 (1%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q L + +R + + DI+ + +P + ILG S+ G Sbjct: 146 QATLERQKAETALRESEQRFRALIENAIDIILIVSSEGNLTYLSPSVKRILGYDPVSLMG 205 Query: 448 PIRNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + IH +D++ + + D + EFRV+ DN++ + + + N + Sbjct: 206 Q--GFWDLIHPDDQEAVKLVFDRIKGKANQSTAISEFRVQTDDNRWIILEAIAKNLEN-D 262 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + ++ +DITE+ + + + +A+ D LTG+ NR + L++L + + Sbjct: 263 PTVAGFVINCHDITERHYTAQQLRYDAYHDKLTGLANRSALLEQLKQAITRNQRRREDHF 322 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ +D+D++K IND LG +GD++L + +R+ + D+LAR G+ F +L Sbjct: 323 ALLFLDLDRFKVINDSLGHLMGDELLKNTAQRLEHCHREGDLLARFGGDEFVFLLRDIQQ 382 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + A + + + P L REI ++ASIG T ++L++A+ AMY AK Sbjct: 383 PQEAIIVAQRIHEVLKAPFTLNNREIFISASIGITISTDRYDHPEQILRDADAAMYRAKA 442 Query: 687 RGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 +G E F + + ++ DL A++ EL + Y PI RL ++I+G EAL++W Sbjct: 443 KGKACHEIFAPTMHLSALKELHLESDLRQAIQRKELVVYYQPIFRLDTQQIIGAEALVRW 502 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASK 803 P I ++F+ IAEE +I I+ ++L+ + + W+ + P FI +N++ K Sbjct: 503 HPPGKSLIPPNDFIPIAEETGLIIDIDRWVLQCACQQLHQWQKEFKDLAPHFISVNLSPK 562 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 D L + +IS T +KL +E+V + N +L +L+++ I + LDDF Sbjct: 563 QFSDPYLTNTITEIISATELPKEYLKLEITETVFLKNSNTVLEILSQLQQLNIQICLDDF 622 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL P +++K + S ++ + K AI+R + +A +E +IA+ I Sbjct: 623 GTGYSSLSYLHRFPLNSLKIDRSFVSHLGQTTKNDAIVRIVGSLANELELELIAEGIEES 682 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ L +G + Q + + P+ + LLK+ Sbjct: 683 YQIEALNHLGYQWGQGYYFSPPIDDQAFSLLLKK 716 >gi|146305795|ref|YP_001186260.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas mendocina ymp] gi|145573996|gb|ABP83528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas mendocina ymp] Length = 1404 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 152/563 (26%), Positives = 272/563 (48%), Gaps = 17/563 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G ++G + + L Sbjct: 836 QRRAEKDLRMAATVFEHSTAAILVTDPAGYIVQVNKAFSRVSGYSAGQVLDQLPGMLT-- 893 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 DR L + +RG + E ++ + + I + + GD++ Y+ Sbjct: 894 --ADRQQA-AHLQYILSQLNQRGSWEGEVWLKRKGGENFPAWVGITAVHDEEGDLVSYVC 950 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 +DI+E+K S + I A+ D LT +PNR F DRL + L + N +M +D+D Sbjct: 951 FFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERH-NEWVVLMFLDLD 1009 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KI 630 ++K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 1010 RFKPINDSLGHAAGDRMLKDVAVRLSACVDGDDTVARMGGDEFTLLLQPRATREGALNRA 1069 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + S+A P L RE VTASIG A S+++KNA+ AMYHAK RG N Sbjct: 1070 IHVAEQILDSLARPFVLEGREFFVTASIGIALAPQDGDELSQLMKNADTAMYHAKERGKN 1129 Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + ++ S +R+ ++ DL A E + L Y P + G+EAL++W+HP Sbjct: 1130 NFQFYQADMNASALERLELESDLRHAQEQGQFVLHYQPQFSGDGRRLTGVEALLRWNHPG 1189 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + ++F+ + EEL ++ + ++LE R + +W D+ P I +N++++ + Sbjct: 1190 RGLVPPTDFIPVLEELGLVVQVGEWVLEEACRQLKAWHDEKIRIP-KISVNLSARQFAEG 1248 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + A++ +T +P+ +++ +ES++M + + LG L+++G+ + +DDFGT S Sbjct: 1249 DLSARIAAILERTGVAPACLEVELTESILMRDVASAMQTLGELKRLGLCIAVDDFGTGYS 1308 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL P D +K + S + G E+ I R+II MA ++ +IA+ + ++ Sbjct: 1309 SLNYLKQFPIDVLKIDRSFVDGLPDGEQDAQIARAIIAMAHSLNMMVIAEGVESHAQLEF 1368 Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949 L GCD +Q + P+ Sbjct: 1369 LREHGCDEVQGYLLGRPMQPRQF 1391 Score = 75.0 bits (183), Expect = 7e-11, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 15/164 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + +Q + +R L D+++ D +P + +LG + Sbjct: 687 IGVAKDITEQIERNQSLRDSEQRYRLLAESISDVIFSTDSALHLNYVSPSVEPVLGYSVD 746 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR-------------AADN 490 + L + + +L+ R + E R+R AD Sbjct: 747 WVMANSFYSLAA-NPQQLNGLNLLLERIRDSLGERDRLE-RLREELPDQLFVFDCLRADG 804 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + +R+ M + NG +G+ DI++Q+++ + + A Sbjct: 805 HKIPVELRLVLMWDENGRFEGILGVGRDISQQRRAEKDLRMAAT 848 Score = 71.5 bits (174), Expect = 7e-10, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 9/156 (5%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP-DIATILGLASGS 444 I + + + S V D+++ D+ RV + + LG + Sbjct: 556 SISDITSRKRIELSLIERERFWSEVVRSVPDLLYVHDMQNKRVLFSNHSLGLQLGYSKTE 615 Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + W +H +D D + I + V L+ R R D Q+ W IR + + Sbjct: 616 LKAMEGDFWERVLHPDDSDYYWRIRNLQKVVGDGLLLESVLRWRHRDGQWRWFSIREQAL 675 Query: 503 -SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + G + R IG+A DITEQ + + +D+ Sbjct: 676 ARDERGRVSRLIGVAKDITEQIE-----RNQSLRDS 706 >gi|224827145|ref|ZP_03700241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Lutiella nitroferrum 2002] gi|224600654|gb|EEG06841.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Lutiella nitroferrum 2002] Length = 2093 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 151/595 (25%), Positives = 291/595 (48%), Gaps = 13/595 (2%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 A + L ++ ++ + + + + + + ++ Sbjct: 1490 MLASQVAISLQNAMLYASLSTEITEHTRTEEELRLAEAKYRDIFDNATEGIFRTSADGQL 1549 Query: 428 VTTTPDIATILGL-ASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + P +A ILG + + G + L ++H + + ++ R +EF Sbjct: 1550 LMANPSMARILGYDSPDQLVGHGQAGLVQHFVHGEEMEELLRVIRRHDAIR----NFEFH 1605 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 R D + + + + G++ Y G+ DI+E+K+ + A D LT +PNR Sbjct: 1606 GRRTDASVVELSLSAHAIRDVRGEVQFYEGMLQDISERKRLEAQLQHQATHDALTCLPNR 1665 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 LDRL + + + V ID+D++K IND G VGD++L + +R+ L+ Sbjct: 1666 NVLLDRLAQAIAHAKCHGE-QCAVCFIDLDRFKWINDSFGHDVGDELLKIVAQRMSASLR 1724 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D++AR+ G+ F ++L ++ +A + + P+ L R +TVT S+G++ + Sbjct: 1725 ESDMIARIGGDEFVLLLRGFGDAESVAHIVNRVADCLTEPLLLAGRYLTVTCSMGYSIYP 1784 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYL 722 + T++E+L+ A++AM+HAK RG N+V+++R +++V ++ +L A+ ++L L Sbjct: 1785 ADGQTAAELLRFADMAMFHAKERGRNNVQAYRPELSQRVNEKVRMEAELRHAIARNQLVL 1844 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P + L +IVG+EAL++W HP+ G + S F+ +AEE +I+ I +++ + Sbjct: 1845 YYQPQVDLCSGDIVGVEALLRWQHPELGLVLPSRFIALAEETHLIEPIGEWVIRQSCLQG 1904 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 +W++ P I + +N+++ L + L + ++ + P ++L +ES M +PE Sbjct: 1905 KAWQEAGL-PAIPVSVNLSTVQLQGSGLEAMVAQCLADSGLDPHCLELELTESASMSDPE 1963 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILR 900 ++ L+ RL+ GI L +DDFGT S + YL P D +K +GS + T +AI+ Sbjct: 1964 KNTALMHRLKAQGIGLAIDDFGTAYSNMYYLKNFPVDKLKLDGSFVREITSDVRSLAIVD 2023 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +I MA + +IA+ E + L CD +Q + + PL +LL+ Sbjct: 2024 AITVMAHRLGVKVIAEMAETEQQVVLLRAHDCDQVQGYYFSEPLPAEDCARLLRA 2078 >gi|222530683|ref|YP_002574565.1| PAS/PAC sensor-domain containing diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor bescii DSM 6725] gi|222457530|gb|ACM61792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caldicellulosiruptor bescii DSM 6725] Length = 1016 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 149/569 (26%), Positives = 275/569 (48%), Gaps = 11/569 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + E+ V D +W+ D ++ + + WL + Sbjct: 446 SEMLMEEKEKYKFLVENVSDCIWEIDFNEKKIEFYGKLKDQFDIDVIKSKNDFSAWLEFF 505 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H +DR L + ++++E R+R + W+ ++ + N + I + Sbjct: 506 HEDDRATVFKKLQDAILLHEEKVEFESRIRDKHGNWRWISSHVQILYNEEDKPEKIIAVN 565 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D T +K+ I A+ D LT +PNR+ F DRL +++ + D+ + V++IDID + Sbjct: 566 IDWTAKKEYEHRIEYIAYYDALTNLPNRKLFEDRLESLIKKA-EDEKTQGAVVLIDIDNF 624 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633 K IND+ G GD+ L+++T++I E L AR+ G+ F +IL ++ + Sbjct: 625 KDINDLYGHEAGDEYLIAVTKKILEYLNSIKLNTFFARVGGDEFAVILDGLAKKEEVIEV 684 Query: 634 AIAMRKSIAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + I + + E I +ASIG + + + E+ +N ++A+ AK G N Sbjct: 685 CTKLLGIFESEIYIQKIEGCIFTSASIGVSFYPDDGRSVKEIFRNVDMALSSAKENGKND 744 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F + ++ I++ L A+E + L Y P+I L D EI +EAL++W P+ Sbjct: 745 FQIFMPFMLMKNFKKIEIEKSLKKAIEADQFELYYQPVINLKDMEIHSVEALLRWVSPEK 804 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS EF+ +AE+ +I I ++E+ D+ +W + + + INI+++ L Sbjct: 805 GIISPLEFIPVAEDSGLIVKIGEMVIEKAFSDLKNWEKKGISY-LHMAINISARQLKTKF 863 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + +Q I + +P +I +E+ + N + S +L L ++GI +DDFGT S Sbjct: 864 FEKMIQKQIERYGVNPQKISFEITETGAVENFDVSLKILSFLCQLGIKFLIDDFGTGYSS 923 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P VK + S ++ +++ AI+ II MA ++ +IA+ + + +++ L Sbjct: 924 LIYLRRLPIGGVKIDRSFISEIELSKESRAIVEGIILMAHKLDLKVIAEGVETKRELEIL 983 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD+ Q + P+ I KLL ER Sbjct: 984 KEIGCDFAQGYLFSKPVPKTEIEKLLIER 1012 Score = 68.1 bits (165), Expect = 8e-09, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 2/164 (1%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 N I + + L++I+ + +G + + L + IV ++ Sbjct: 258 NRQILLSALYLLIIILFAASVIIFVMTRINRGLERGKQAYEKYAQLLAENANAIVLTLNL 317 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + I G S + G W+ + R + L + + +E Sbjct: 318 KGEIIYFNKFAEQITGYKSEEVVGKK--WVDIFIPSHRREYIENLFKRISEVKILNDHEN 375 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + W++ + N + I DIT+ K++ + Sbjct: 376 EIVTKNGDTRWILWNNTLIENPYLNEPLIISTGLDITQIKRTQQ 419 >gi|320353529|ref|YP_004194868.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfobulbus propionicus DSM 2032] gi|320122031|gb|ADW17577.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfobulbus propionicus DSM 2032] Length = 996 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 143/578 (24%), Positives = 269/578 (46%), Gaps = 13/578 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ + Q + + A+ G G D V I G + + Sbjct: 415 ILTEIRERIQAEQQLMLYHKAFEHALEGIGI----TDQEGTLVAVNQAFCDITGYSQPEL 470 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G L H D+ +R + S GR E R + + + I+ I + + Sbjct: 471 LGRNMRLLKS-HRQDQSFYRQMWTSLRT--TGRWTGEIWNRRKNGEIYPEILSISTIYDE 527 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + ++ + +DITE K+ E I+ A+ D LTG+PNR DR+ + + + + Sbjct: 528 RRAVAHHVAVFHDITEMKRQEEQIIHQAYHDMLTGLPNRLLANDRIEVSIAHARRSGS-K 586 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D +K ND LG GD +L+ + R+ ++ D +ARL G+ F I++ + Sbjct: 587 LAVLFLDLDNFKNTNDSLGHEWGDKLLLGVANRLVSQVREEDTVARLGGDEFLILVAALA 646 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + D A + +S+A P N+ + E+ VT SIG A + ++ + K+A++AMY AK Sbjct: 647 SEEVVIDLAKRLLRSLAAPFNIDDTELFVTVSIGVAFFPEDGSSAGILTKHADIAMYEAK 706 Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 RG N F ++ +L AV N E + + P I ++ + G EAL++ Sbjct: 707 ARGKNRYCLFTSDLSERIVFLRQLENNLRQAVGNREFTVFFQPKIDPVNGTMTGAEALVR 766 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W ++ ++F+ +AEE +I + +LE+ + + ++ P + I +N++ Sbjct: 767 WRKEDGTIVNPADFIPLAEETGLIIPLGEQVLEQACHML-TILERLGRPELSIAVNLSPL 825 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + N L E + A++ + + R++L +E+ +M N ++ L +L GI++ +DDF Sbjct: 826 QFVQNNLVERILAMLDRHGIAHDRLELEITETAMMTNLAKTVDTLNQLAGAGIAIAVDDF 885 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL P T+K + S + ++ +II MA N+ ++A+ + Sbjct: 886 GTGYSSLSYLKRFPIRTLKIDRSFIRDLTRDPSDDQLVETIILMAHNLGIHVVAEGVESA 945 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 ++ L + C+ IQ + PL + L ++ P+ Sbjct: 946 EQLEWLKQRRCEQIQGYVCSRPLPHEAFLAFIERSVPV 983 >gi|224827054|ref|ZP_03700151.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] gi|224600720|gb|EEG06906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] Length = 887 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 152/591 (25%), Positives = 272/591 (46%), Gaps = 15/591 (2%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVT 429 L ++ ++ + E Q LA+ + V D R + Sbjct: 295 ANLTAALMRDEGGRPEYFILVVEDISARKQSEEAQQLALTVFDSMLEGVIITDHHRRILA 354 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 I ++ G H D +R I + GR + E R D Sbjct: 355 VNAAFGEITRYPVEALLGRTPPLWRTAH-QDAAFYRRIWRQLLA--SGRWEGELWHRKRD 411 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 + + I + + G +Y+ + NDI++ K S E + A D LTG+PNR L Sbjct: 412 GTPFPLWLSISCVRDEQGRPRQYVFVFNDISQLKDSQEQLERLAHYDPLTGLPNRHLALA 471 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 RL L+ + VM ID+D++K IND LG GD++LV++ +R+ + L+ D L Sbjct: 472 RLEHALERARRHA-FPLAVMFIDLDRFKTINDSLGHQAGDELLVAIAQRLHQRLRQEDTL 530 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKI 668 ARL G+ F +++ E ++A A A+ K + P E V ASIG + + Sbjct: 531 ARLGGDEFLVVIE-EAPVQQVASIAHALLKVVDQPFGFSGGGEAYVGASIGISLYPGDGR 589 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHP 726 ++SE+++NA+ AMY AK +G N + S ++R+ ++ L A+ E L Y P Sbjct: 590 SASELIRNADAAMYLAKAQGSNAYRFYTESLTRAANERLSMETSLRRALRCEEFVLHYQP 649 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 ++ L ++G E L++W P + S F+ +AEE +I + ++L R +W Sbjct: 650 LVELASGRVLGAEVLVRWQPPGEALVPPSRFIPLAEETGLIVPLGDWVLHEACRQGKAWL 709 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 D P+ + +N++ + L ++L ++ + + P++++L +E +M E++ Sbjct: 710 DAG--LPLLLAVNLSPRQFLRHDLVGQVRKALQGSGLPPAQLELELTEGALMEQAEQAVK 767 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 L L+++G+SL +DDFGT S L+YL P D +K + S + I+ +II Sbjct: 768 TLHALKRLGVSLAIDDFGTGYSSLAYLKRFPLDKLKIDRSFVRDLPRDSSDAEIVTTIIA 827 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 M +N++ +A+ + + L ++GCD Q + PL + + L++ Sbjct: 828 MVRNLKLEALAEGVETPQQLAFLRQLGCDSGQGYLFSPPLPAEAFERWLRD 878 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 35/327 (10%), Positives = 85/327 (25%), Gaps = 15/327 (4%) Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF---LFMYLHWNRWHA 280 A + +I + FL+ L +++ ++ ++ + L Sbjct: 14 FALAGVLWIVLSDRFLASLPVSTQTLMMLQTYKGMGFVAGISLLLYYLVRRALKSQAQLL 73 Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY------ 334 + + + + + A+ L +G Sbjct: 74 VQLRRNQALFQEAQLSAQLGSWEYDSARREFLWSGAARQLLGLPASETRTERGTLLQRVA 133 Query: 335 --ERAVLLIPAWILIFIWFIGLWMAITKRLDNDII-QPALVGGLVLIVILIGFTVIQHVL 391 +RA + ++ + + + L + V+Q + Sbjct: 134 AGDRARVATVLDAMLAEGSGSVEFCRAGTGAAPVWLRLHYQVHLDEEAPGLVLGVLQDIS 193 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + + + + + ILG + + Sbjct: 194 VQKAQDDALREREQLFRGTFEQAAVGIAHLGLDGHWIRVNQRLCDILGYSREELL--RLT 251 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 H D+D+ + + E R R Q W + M + G Sbjct: 252 LQDITHPADQDSDLVMTRRLLSGEIPSFSIEKRYRQRRGQLVWANLTAALMRDEGGRPEY 311 Query: 512 YIGIANDITEQKKSLE-GILCNAFQDN 537 +I + DI+ +K+S E L D+ Sbjct: 312 FILVVEDISARKQSEEAQQLALTVFDS 338 >gi|56476628|ref|YP_158217.1| hypothetical protein ebA2147 [Aromatoleum aromaticum EbN1] gi|56312671|emb|CAI07316.1| conserved hypothetical protein, contains PAS domains [Aromatoleum aromaticum EbN1] Length = 740 Score = 545 bits (1404), Expect = e-152, Method: Composition-based stats. Identities = 151/563 (26%), Positives = 273/563 (48%), Gaps = 15/563 (2%) Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH 457 + +R +L S D + D + V+ T+ G ++ + G + H Sbjct: 185 REEDRLNLIAQVFERSTDAIMITDSLNRIVSVNRAFTTVTGYSADEVLGRNPKLLASGRH 244 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DRD +R + + R G E R + + + + I + N +G I I I Sbjct: 245 --DRDFYREMWSAI--ERNGSWSGEISNRRKNGEIYNEWLTIHAVRNESGGIENCIAIYA 300 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 +IT+Q+ + I A D LT +PNR DR+ L +A + R V+ +D+D++K Sbjct: 301 EITDQRAAASRIQFLAHYDPLTLLPNRALLQDRMHQGLAHAAR-EGTRAAVLFLDLDRFK 359 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG VGD +L + +R+ ++ D +AR G+ F ++L +++ + A A + Sbjct: 360 TINDSLGHLVGDHLLQEVAQRLKASVREDDTVARRGGDEFIVMLPHVDSAEQAAHVAGKI 419 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +++ I + + V+ SIG + + + +++NA++AMY +K G N + F Sbjct: 420 IEAMEQTIPVNGYVLNVSFSIGISVFPDDAMDPDTLIRNADIAMYRSKASGRNQFQFFTA 479 Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 +R+ ++ DL AVE E L++ P I+G EAL++W HP+ G ++ + Sbjct: 480 DMNAHALERLALENDLHRAVERGEFRLMFQPQFEG-SGSIIGAEALLRWQHPQRGLVTPA 538 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AEE +I I ++LER + + +WRD I + +NI++ L E ++ Sbjct: 539 EFIPVAEETGLIVPIGTWVLERACQQVRAWRDAGLK-KITVSVNISALQFSQKNLLELIR 597 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 L++ + P ++L +ESV+M + + L+ L+++G+ + +DDFGT S LSYL Sbjct: 598 RLLAVSNIEPGTLELELTESVLMHDHVATSGLMSELKEMGVRMAIDDFGTGYSSLSYLRS 657 Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +K + S + ++ AI +II +AKN+ +IA+ + L CD Sbjct: 658 FPISKLKIDQSFVRDLSDGGDAGAITGAIIGLAKNLNMRVIAEGVETAQQASFLQAQCCD 717 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 Q + P+ +LL+ Sbjct: 718 EFQGHFFSQPVSPEKFAELLRAE 740 >gi|302341977|ref|YP_003806506.1| diguanylate cyclase/phosphodiesterase [Desulfarculus baarsii DSM 2075] gi|301638590|gb|ADK83912.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfarculus baarsii DSM 2075] Length = 703 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 144/615 (23%), Positives = 266/615 (43%), Gaps = 12/615 (1%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATGYFSQGIFSDGE 405 + + L++ V + V+ Q E Sbjct: 80 LGGCLAAALGPEPWAVQWADSQGRRRLLLVAVTKDDCRARGLAGVIVDQTGQQAHRERAE 139 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + + + + D + + + G + + G +L Y H + Sbjct: 140 LLDQVLECASEGIMVTDRDGHIIMVNRGFSELTGFDAVEVIGRTPEFL-YPHDDHHGGHG 198 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 I GR + E + Q + ++ ++ + G + Y+G +DIT K++ Sbjct: 199 QIWRELAA--TGRWRGEVASLRKNGQAYPQLLHLQAIKGPGGQVRNYVGDMHDITSIKRT 256 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I + D LTG+PNR F DRL L + + V+ +D+D +K +ND LG Sbjct: 257 EEQIAHQVYHDPLTGLPNRLLFQDRLEMALAHAKRQRDG-VAVLFMDLDNFKHVNDSLGH 315 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 A GD +LV++ RR+ ++ D +ARL G+ F +L + A M +A P Sbjct: 316 AAGDKLLVAVARRLLAKVRREDTMARLGGDDFLFLLPETAGEDEAGQVAQQMLDELARPF 375 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L +++ + AS+G A + + T +++ NAELAMY AK F + Sbjct: 376 RLGGKKLHIRASVGIALFPNDGQTPEKLIANAELAMYRAKEGCREGYCFFEPALNQKVRH 435 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R+ ++ L A++ E + Y P I L VG+EAL++W P G IS EF+ +AEE Sbjct: 436 RLELENRLRTALQKEEFLVCYQPKIDLASLRTVGVEALVRWRRPGVGLISPGEFIPVAEE 495 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I + ++L + + WR+Q + + +N++ + LLD +L + + ++ Sbjct: 496 TGLIIPLGRWVLRQACQQAQRWREQGRQ--LSVAVNLSPRQLLDPDLTRAVAEALEESGL 553 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P +++L +E+ VM + E + L L +G L +DDFG S L +L +P D +K Sbjct: 554 PPEQLELEITENAVMPSLELALGRLAELAALGARLAMDDFGRGYSSLYHLHRLPIDILKV 613 Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + T +I+ +++ M +++ ++A+ + + ++ L MGC +Q + Sbjct: 614 DQYFIKEMTPHSRVSSIVEAMVAMGRSMGLVVVAEGVENKRHLEMLAGMGCHQLQGFLFS 673 Query: 942 SPLGFNSILKLLKER 956 PL + L Sbjct: 674 RPLEPPRLEDYLARE 688 >gi|117922261|ref|YP_871453.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] gi|117614593|gb|ABK50047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] Length = 1505 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 146/555 (26%), Positives = 273/555 (49%), Gaps = 18/555 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465 + + V + + P + I G + + IH RD F Sbjct: 959 VLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKY-----LIHLAYSRQQRDLFN 1013 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 +I + ++ E +R + + + I + + G+ ++ + DITE+KK+ Sbjct: 1014 SIEQQLLRHK--HWAGEIWIRNRARKAILVWLEINQVIDVKGETSHFVAVFTDITERKKA 1071 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G Sbjct: 1072 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNI-VALLFLDLDRFKHINDSMGH 1130 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +GD +L ++ R+ ++ D +ARL G+ F IIL + + + K+ P Sbjct: 1131 HIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF 1190 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L ++ +T++ SIG + + + ++K A+ AMYHAK G N+ + + + + Sbjct: 1191 LLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATR 1250 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 V ++ L A+ +EL LVY P L + GLEAL++W H + G IS +EF+ +AEE Sbjct: 1251 HVQLEAGLKQAISRNELSLVYQPKFCLRKGSLTGLEALLRWHHSELGPISPAEFIPLAEE 1310 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++ + + W + I + +N++++ L ++ ++ +S + Sbjct: 1311 TGIINQIGHWVINHACQQLAEWNELGFG-DISMAVNLSARQLK-ADIISTIEVALSVSGL 1368 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K Sbjct: 1369 PAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1428 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + AI +II +A ++E ++A+ + + + L GCD +Q ++ Sbjct: 1429 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1488 Query: 942 SPLGFNSILKLLKER 956 PL L LL++R Sbjct: 1489 KPLSAQDCLALLQQR 1503 Score = 108 bits (270), Expect = 5e-21, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 11/182 (6%) Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 + + ++ + +G + IV+ Q F I + Sbjct: 776 GSYALLVDLTVKAPFYRSQIAYALYVLLALGLMGWIVL----WRKQKREQQQEFETSIRA 831 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 ER LA+ SGD +WDW+I +V T + +S ++ H DR+ Sbjct: 832 SEERLKLALWASGDGMWDWNIQEQQVYRTHTDIPVSQWSSHTLLHDNA------HPEDRE 885 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITE 521 F+ +L + + E+R+ + + W++ R + + +N+ +R G +IT Sbjct: 886 RFKQVLTDHLQGHTPFFEMEYRIEHSPGNWLWILERGKVVETNNQEQPMRMTGTTRNITS 945 Query: 522 QK 523 +K Sbjct: 946 RK 947 >gi|295675479|ref|YP_003604003.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] gi|295435322|gb|ADG14492.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] Length = 1055 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 152/555 (27%), Positives = 268/555 (48%), Gaps = 14/555 (2%) Query: 407 QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 QS A+ S + + + + P I G + G L +DRD Sbjct: 496 QSRALDASVNAILITAPSPSGNLIEYVNPAFMRITGYDLDEVIGHDCRVLQR---DDRDQ 552 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + R + R D W + I P+ N+ G I +IG+ ND+TE Sbjct: 553 EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNAEGVITHHIGVINDVTEL 611 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + E + A D LT +PNR DRL L ++ + V+ +D+D +K +ND Sbjct: 612 IRYQEQLEYQANYDGLTRLPNRNLLRDRLEHALVVAQRH-HTGVAVVFLDLDGFKNVNDS 670 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +VGD +L + R+ + D +AR G+ F I++ + + + +R SIA Sbjct: 671 LGHSVGDRLLGVVAERLARCSRTSDTVARHGGDEFVIVMTDTVDEQSLITWMERVRASIA 730 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P+ L E+ V S+G + + + ++K A++AMY AK G N + ++ S Sbjct: 731 EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADVAMYRAKDMGRNTFQFYQPEMNAS 790 Query: 703 D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ ++ L A+ ++E L Y P + ++ +IVG+EAL++W P+ G + S F+ + Sbjct: 791 AGARLNLERRLRRALRDNEFLLHYQPQVDIVSGQIVGIEALVRWHDPEAGLVPPSSFIPL 850 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I ++ ++L R +W+DQ PP + +N++++ + + + ++++ Sbjct: 851 AEESGLIGPLSEWVLREACRQNKAWQDQGL-PPARVSVNLSARVFQQRNIAKLVMQVLAE 909 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P ++L +ES +M N E + L+L L +GI L +DDFGT S LSYL P D Sbjct: 910 TGLEPRYLELELTESTIMRNAEEAVLMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 969 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S ++ + I +II +A +++ +IA+ + + L CD +Q Sbjct: 970 LKIDRSFVSDIGVSGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1029 Query: 939 HVASPLGFNSILKLL 953 + A PL I +LL Sbjct: 1030 YFAKPLSTEGISELL 1044 Score = 51.5 bits (122), Expect = 8e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 16/167 (9%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 L + F + V + + ++ D+ + Sbjct: 341 LNFMGRDASFVLADDVTDQINAEAEALRSNQMLEAVIDNIPQRIFWKDLNSRYLGCNMAF 400 Query: 435 ATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 A GLA + G P R + ++ +DR+ T + + +F + Sbjct: 401 ARDAGLAYPEQVVGKSDTDLPWRAFADLLNEHDREVASTGVPKM------NFEVDFVI-- 452 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 D + P ++ +G ++ +G DITEQK++ + + Sbjct: 453 -DGVHRTRVTSKLPFTDGDGQVIGVLGSYTDITEQKRADLALRLQSR 498 Score = 42.6 bits (99), Expect = 0.33, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 9/168 (5%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 ++ ++ G VL+++ G V ++ + + ER ++ +D Sbjct: 206 VLLVTMLSGSVLLMLTFGVRENS-VREKLRSARALARNDERFRSLFDDHTVPMYIFDRDT 264 Query: 426 -DRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVG-YRRGRLQYE 482 + G G + I + L + + Sbjct: 265 LRFLAVNTAAIEQYGYTESEFLGMT---IRAIRPTSEVARLERHLARSADLRQSHTMAGI 321 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +R R D + + + N G ++ +A+D+T+Q + L Sbjct: 322 WRHRRKDGSIISVNVSYHAL-NFMGRDASFV-LADDVTDQINAEAEAL 367 >gi|257093885|ref|YP_003167526.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046409|gb|ACV35597.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 978 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 146/566 (25%), Positives = 265/566 (46%), Gaps = 12/566 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLP 454 + + A+ + D V D+ ++ P + + G + G R Sbjct: 272 AGHALAERQRLHATALESTRDGVLIADLTGRIISVNPAFSEMTGYTAAEAIGRNPRLLQS 331 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H DR ++ + S + G Q E R AD + + + + + +G Y+ Sbjct: 332 GRH--DRAFYQAMWASL--TQAGHWQGELWNRRADGEIYPQWATLSVVKDEHGQPTHYLA 387 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + D+++ K E + A D LT +PNR L L+ + V+VI++D Sbjct: 388 VFTDLSKLKHREEELEHLAHYDPLTDLPNRLLLRSLLQHALERAQRQGGKS-AVLVINLD 446 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND LG A+GD++L+ +T R+ L+ D++ RL + F IL + ++ A Sbjct: 447 QFKNVNDSLGHALGDELLLGVTARLKARLRHEDVVGRLGADEFVAILEASQDAENAGSIA 506 Query: 635 IAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + ++A P L E ASIG + + ++++L++A++AM+ AK RGGN Sbjct: 507 GDLLAALAPPFVLADGHETYARASIGISVFPQDGKGANDLLRSADVAMHRAKQRGGNQYA 566 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + R+ ++ L A+ EL L Y P + L IVG EAL++W P +G Sbjct: 567 FYTGELGHGALQRLEMETALRRALIQGELVLHYQPKLDLASGVIVGGEALLRWQRPGFGL 626 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + F+ +AEE +I I +++ R I +W +A P + + +N++++ EL Sbjct: 627 VPPYRFIPLAEETGLIVPIGAWVINETCRQIRAW-AEAGQPSVMVAVNVSARQFAGGELE 685 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + K P + L +ES++M PE++ L LR++G+++ LDDFGT S LS Sbjct: 686 AVLATALRKHAVDPRMLGLELTESMLMAAPEQATERLDALRRVGVAVALDDFGTGYSSLS 745 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P D +K + S +T K I ++I +A + ++A+ + E + L + Sbjct: 746 YLSRFPVDELKIDRSFITHIVSDPKAANIATAVIALAHRMALKVVAEGVETETQLSYLRK 805 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 CD IQ ++P+ + L+ + Sbjct: 806 NRCDQIQGYLFSAPVPADEFATLVSQ 831 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 8/160 (5%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV---TTTPDI 434 + +I Q S + + L + +++ + + + +I Sbjct: 131 LAGVIEDAARQARF--RQESSSVRPATTHRQLVLSAGPTVLYACGVDGQSLVPLWVSDNI 188 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +L + W+ ++H DR + + G L E+R R W Sbjct: 189 TRVLHFSPAECLA-PDWWVSHVHDADRAHVLETWPRLLA--DGSLLQEYRFRDGQGVVRW 245 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + R + ++N L +G +D+T E +A Sbjct: 246 LRDHKRLLFDANHQPLAVVGNWDDVTAGHALAERQRLHAT 285 >gi|83594467|ref|YP_428219.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC 11170] gi|83577381|gb|ABC23932.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC 11170] Length = 855 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 146/570 (25%), Positives = 260/570 (45%), Gaps = 12/570 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + + + + T P + GL M G Sbjct: 273 TVEDITAQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGRP 332 Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 R + +H ND F + + V R G + E + + + + + G+ Sbjct: 333 ARLFASGLHEND---FLATVAAEVD-RAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGE 388 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 Y+ DIT++K+ E I A D LT +PNR +DRL + + + V Sbjct: 389 TTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGR-QVCV 447 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 M +D+D++K+IND G + GD+VL RR+ ++ D + RL G+ F +IL + + Sbjct: 448 MFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQH 507 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A A + S++ P + E+ S+G + T+ ++L+NA++AMYHAK G Sbjct: 508 AGAYIAEKILYSLSEPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGG 567 Query: 689 GNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 F R + ++ DL A+ E L + P +R D ++G EALI+W H Sbjct: 568 ERRYAIFTPDMARRSLALLTMESDLRHALARDEFELHFQPKVR-ADLTLIGAEALIRWRH 626 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G I+ +F+ +AEE +I I + L ++SWR + P + +N++ + Sbjct: 627 PEKGLINPGDFIPLAEESGLILPIGRWTLREACDRVMSWRAEGLTIP-SVSVNVSPRQFQ 685 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L E ++ ++ +T P + L +E+V+ G+ E + L L+ +G++L++DDFGT Sbjct: 686 DQTLVETVRQILVETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTG 745 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L+YL P DT+K + + + + K AI+ +II +A+N+ +++A+ + Sbjct: 746 YSSLNYLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQA 805 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L C Q + PL L+ Sbjct: 806 EFLGSRDCQNFQGFLYSRPLPPAEFTTFLR 835 Score = 79.2 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 70/261 (26%), Gaps = 15/261 (5%) Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 I A + + I A+ L + G L PA Sbjct: 32 IAEGLSAALFQSVVEALPVGTALLRDGVIVHANATLAGQIGETIDTLIGSPLTSYLTPAD 91 Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF------------TVIQHVLA 392 L + +A+ + I V + F + + + A Sbjct: 92 ALAVQKVVEGAIALHGGVPVRRIAHIRHISGSERVYSLRFSPLDNGPHPLLVVITRDMTA 151 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRN 451 + + + + + ++ + P +A I G + + + Sbjct: 152 QVAAENALRAAEGKYRAIFENAVEGIYQSTPDGTYLDVNPALARIYGYASPAELIAHFTD 211 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 ++++ + + V D W+ R + + ++L Sbjct: 212 IASQLYVDGTKRGE--FQRLMRETGEVRDFTAEVWRCDGHTIWITENARCVRGPDNEVLY 269 Query: 512 YIGIANDITEQKKSLEGILCN 532 Y G DIT Q++S E + Sbjct: 270 YEGTVEDITAQRQSQETMRLL 290 >gi|296391416|ref|ZP_06880891.1| motility regulator [Pseudomonas aeruginosa PAb1] Length = 1385 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + S + D V + + G + + L Sbjct: 815 QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 872 Query: 457 HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 DR + G + E + + + + I + + GD++ ++ Sbjct: 873 --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 930 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+E+K S I A+ D LT +PNR F DRL T L + + +M +D+D+ Sbjct: 931 FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 989 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631 +K IND LG A GD +L + R+ + D +AR+ G+ F ++L S+ + + Sbjct: 990 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1049 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + +A P L RE VTASIG A S ++KNA+ AMYHAK G N+ Sbjct: 1050 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1109 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ +++ +R+ ++ DL A+E E L Y P + G EAL++W HP+ Sbjct: 1110 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1169 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + SEF+ + EE+ ++ + ++L + + SW P + +N++++ D + Sbjct: 1170 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1228 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + A++ +T P+ ++L +ES++M + + +L L+++G+++ +DDFGT S Sbjct: 1229 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1288 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P D +K + S + G E+ I R+II MA ++ +IA+ + + + L Sbjct: 1289 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1348 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 GCD +Q P+ L Sbjct: 1349 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1376 Score = 74.6 bits (182), Expect = 7e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444 + V + + + S AV D ++ D+ RV + + LG Sbjct: 535 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 594 Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + N W +H +D++ + I + V L + R R D ++HW IR + Sbjct: 595 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 654 Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533 + +G + R IG+A DIT +++ A Sbjct: 655 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 693 Score = 67.3 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + T + + +G R + D+++ D + +P + + G + Sbjct: 666 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 725 Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486 L +H +L R + E R Sbjct: 726 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 779 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 AD + + +RI M + + +GIA DI++Q+++ + A Sbjct: 780 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 827 Score = 39.2 bits (90), Expect = 3.6, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425 GG + I +L+ + +L QG+ + + A+ + V Sbjct: 223 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 282 Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477 P + G++S + LP + D + +L V Sbjct: 283 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDTGGDGETRSELLPLRVRGEPR 342 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 A+ +R G + + D+TE++ + Sbjct: 343 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHA 386 >gi|320353827|ref|YP_004195166.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfobulbus propionicus DSM 2032] gi|320122329|gb|ADW17875.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfobulbus propionicus DSM 2032] Length = 740 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 149/576 (25%), Positives = 272/576 (47%), Gaps = 9/576 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + A + S S + D R+ V + G + Sbjct: 163 GTVMDITARKEAELELEVQRAYFSQLFANSPQAIVIIDTQRNVVNCNHGFEQLFGYRAVD 222 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G I + L + + +Q E + R + + + P+ Sbjct: 223 IIG--FGMRALIVPEELLVECEKLRNAIL-DGETVQCETQRRHRNGTLIPVDMIGFPIR- 278 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 I I I DI+E+K + I AF D LTG+PNR F +RL L+ S L Sbjct: 279 VGQSINGIIYIYQDISERKSFEDQITHQAFHDALTGLPNRTLFGERLQRALERSRRRPEL 338 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 V++ID++K+K IND LG GD +L+ + +R+ ++ D +ARL G+ F IIL Sbjct: 339 YYAVLMIDLNKFKAINDSLGHPAGDQLLIEVAKRLSVCVRSVDTVARLGGDEFAIILEEF 398 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ A M + P +L +IT ASIG + ++ E+L++A++AMY A Sbjct: 399 TARKELLKAARRMHSILCEPFSLYGNDITPGASIGIVPKIADYTSAEEILRDADIAMYRA 458 Query: 685 KHRGGNHV-ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 K +G V R+ + + ++ +L + + L L Y PI+ ++DE + G EAL++ Sbjct: 459 KQQGKGIVLFDKRMHQELVESISLEAELREVLAHDGLILHYQPIVSVLDECLQGFEALVR 518 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIAS 802 W+HP G + F+ +AEE +I + +++ R + SW+ + + +N++ Sbjct: 519 WNHPLRGMVPPDRFIPLAEENGLIVDLGKWVIAEACRALKSWQQSIDGTAGLTMSVNVSC 578 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L L E + ++ +P +K+ +ESV+M + +R+ L RLR +G+ + +DD Sbjct: 579 RQLTKPGLVEHVTEVLEHNQLNPRCLKIEVTESVLMHDVDRAINELNRLRALGVQIAIDD 638 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIY 919 FGT S L+YL +P D +K + S ++G E + I+RSII +A+++ ++A+ + Sbjct: 639 FGTGYSSLAYLRRMPIDHLKIDRSFISGVEEGIKENDQIVRSIISLARSLGLGVVAEGVE 698 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ L ++ CD Q + P+ +L+++ Sbjct: 699 SREQLEWLRQLNCDRAQGFMFSRPVDNAKAQELIRK 734 Score = 84.6 bits (208), Expect = 7e-14, Method: Composition-based stats. Identities = 53/350 (15%), Positives = 106/350 (30%), Gaps = 44/350 (12%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIR 450 Q ER S + ++ + P +A I G + + R Sbjct: 42 ELVAAKQDEQKRLERYRSLFNNSLEGIFLTTPDGRYLDVNPTLARIYGFSTPHELINHFR 101 Query: 451 NWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + ++ N RD F L + +E +VR + + W+ R + + G+ Sbjct: 102 DIKHQLYVTPNRRDEFVLTLAR----DNKVIGFESQVRKRNGEVIWISENARAVYDERGN 157 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I Y G DIT +K++ + R F N + Sbjct: 158 ISYYEGTVMDITARKEAELELEVQ-----------RAYFSQLFA----------NSPQAI 196 Query: 569 MVIDIDKYKKINDVLGIA--VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ID + +N G G + + + L+ ++L + + + Sbjct: 197 VIIDTQR-NVVNCNHGFEQLFGYRAVDIIGFGMRALIVPEELLV-----ECEKLRNAILD 250 Query: 627 SLKIA-DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + R +P++++ I V SI + SE + + A Sbjct: 251 GETVQCETQRRHRNGTLIPVDMIGFPIRVGQSINGIIYI--YQDISERKSFEDQITHQA- 307 Query: 686 HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 H + + ++ L + ELY I + I Sbjct: 308 ----FHDALTGLPNRTLFGERLQRALERSRRRPELYYAVLMIDLNKFKAI 353 >gi|301382751|ref|ZP_07231169.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] gi|302064026|ref|ZP_07255567.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato K40] gi|302130707|ref|ZP_07256697.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 825 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 154/581 (26%), Positives = 275/581 (47%), Gaps = 12/581 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 +++ G + + SQ + + + + V D + I Sbjct: 234 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 293 Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G R H D + ++ G Q E R + + + + Sbjct: 294 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 349 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + N + ++ + DI+ K + + A D LTG+PNR F RL + L Sbjct: 350 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLH 409 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S +L V+ +D+D++K IND LG VGD +L + R+ E L+ D +ARL G+ F Sbjct: 410 SEESGSL-GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEF 468 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L A + + P E E+ ++ SIG + + + ++KNA Sbjct: 469 IVLLPGLLQPSDAKAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNA 528 Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY +K +G N VES+ S+R+ ++++L A++ ++L L Y P I L+ + Sbjct: 529 DAAMYRSKAQGRNRVESYTRDLTEQASERIALEQELRRALDRNQLSLAYQPKISLLTHTL 588 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EALI+W HP +G + F+ +AEE MI I ++LE+ R + +WR P Sbjct: 589 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGDWVLEQACRQMGAWRK-TCTPFGP 647 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+A L L E ++ L++ P ++L +E+ +M + + +L +L+++G Sbjct: 648 MSVNLAGAQLRQPNLVERIEQLLTDNGLVPDCLQLEITENFIMSQTQDALAVLHKLKQLG 707 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 + L +DDFGT S LSYL +P D +K + S + G E AI+R+II + ++++ T+ Sbjct: 708 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 767 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953 IA+ + + L+ GC+ IQ ++ PL + + L Sbjct: 768 IAEGVETHEQQQFLSEEGCEQIQGYIISLPLQPDEFSERFL 808 Score = 43.4 bits (101), Expect = 0.18, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 14/156 (8%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA- 441 V++ + A Q + E+ + A + D + + I G + Sbjct: 118 LVVVRDITALKQAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYSE 177 Query: 442 SGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + + W ++R L + R+R + + Sbjct: 178 RHCLEHSTFDLGIWADL---SERSRLIEQLKQH----GVVHGFRARLRNVNGSIRVCELS 230 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 P+ S L + I+ DITE + E + A Sbjct: 231 SHPLLISGDACL--LTISRDITESQLMQEKLHLAAT 264 Score = 42.6 bits (99), Expect = 0.32, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 35/147 (23%), Gaps = 15/147 (10%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + R + D + I + GL+ + G L Sbjct: 7 REALRLSEGRFASVFAQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEVIGKTPTELDL 66 Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 L E R + + ++ +P G + Sbjct: 67 WAVPGIGPKVLQQL-----QTGNIHNLEIPFRRKNGRTFSGLMSAQPF--DQGSTPAVLV 119 Query: 515 IANDITEQKKSL------EGILCNAFQ 535 + DIT K++ E AF Sbjct: 120 VVRDITALKQAQQQLQLSEEKFAKAFH 146 >gi|222056656|ref|YP_002539018.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] gi|221565945|gb|ACM21917.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] Length = 845 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 138/573 (24%), Positives = 258/573 (45%), Gaps = 12/573 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + L + ER + D ++ D + + G Sbjct: 279 TLSMTLKNYLLYEERQKSEERYRYLFQNANDPIFIIDRELKFINVNRRAMDLFGYGLDEF 338 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSN 504 N + + + L +L R + I P Sbjct: 339 V--AMNMVDLVPEEQIPRIQGELKKMESMEALDKLSTNIR--TKWGYSLNVEISSSPFVE 394 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 N +++ I I D+TE KK + I A D LTG+ NR F+D L + + + Sbjct: 395 RN-NVMGSIHIVRDVTESKKMEDEIRYQATHDILTGLANRMLFMDHLALSISQGHRYNEI 453 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + VM +D+D++K IND LG A GD +L ++ R+ E ++ D +AR+ G+ + I++ Sbjct: 454 Q-AVMFLDLDRFKSINDSLGHAAGDKLLQLISGRLKECVRETDTVARIGGDEYNILITQM 512 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A + S+ P + ++ VT SIG + + + + +LKNA++A+YHA Sbjct: 513 AHPEDATAIANKILSSMNKPFAIDGHQLHVTISIGISLYPTDGEDAETLLKNADIALYHA 572 Query: 685 KHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +G N+ + + ++ +RV ++ L A+E EL ++Y P + + ++ G EAL+ Sbjct: 573 KEQGRNNYQFYNPALNTRTLERVKMENRLRQALERHELVVLYQPQVAMDTGQVTGAEALV 632 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 W HP+ G +S F+ +AEE+ I I+ ++LE +W+D+ + +N++S Sbjct: 633 YWLHPELGLLSPGHFIPMAEEIGFITDIDEWVLETACAQNKAWQDE-GYRSFNVTVNMSS 691 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K +L + ++ +++ T P ++L +E M + E + L L + + +DD Sbjct: 692 KQFRRPDLVDQVRRVLNATGLPPRFLELEITEGTAMKDIEYTIPSLNTLTGMEVGFAIDD 751 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LS L +P +K + S + + AI+ +II MA N++ +IA+ + Sbjct: 752 FGTGYSSLSCLKKLPIRKLKIDKSFIFGVNTDPNDKAIVATIIAMAHNLKLEVIAEGVED 811 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ L + CD +Q + P+ +L+ Sbjct: 812 ADQLEFLHQNHCDQMQGFLYSRPIPAEDFRRLI 844 >gi|291613347|ref|YP_003523504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291583459|gb|ADE11117.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 927 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 151/571 (26%), Positives = 253/571 (44%), Gaps = 13/571 (2%) Query: 390 VLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG- 447 V +T Q + R + + S + + D + P + G A+ + G Sbjct: 361 VFSTDLTEQKRAEESLRLAAMVYENSSEAILVTDADNLIIAVNPAFEQMTGYAAAEVLGK 420 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 R + H DR F + + G E + + + + ++ I + + +G Sbjct: 421 NPRIFKSGRH--DRA-FYHSMWLALDTE-GYWHGEVWDKRKNGEEYIKLLTINVIRDDDG 476 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 I R++ + DITE+KK E I A D+LT +PNRQ F DRL + L Sbjct: 477 AIYRHVALFTDITERKKVEELIWRQANYDSLTKLPNRQMFHDRLEQEAKKAHRA-GLSMA 535 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 +++ID+D++K++ND LG GD +L+ RRI ++ D +ARL G+ F +IL + Sbjct: 536 LLLIDLDRFKEVNDTLGHDKGDILLIEAARRISACVRESDTVARLGGDEFIVILSELEDM 595 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 I A + S+A P L ++ASIG + + + + K+A+ AMY AK+ Sbjct: 596 ASIDRVAQDILGSLAEPFKLDAEPAYISASIGISLYPNDATELDVLFKHADQAMYVAKYA 655 Query: 688 GGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N F R+ + DL +AV + + Y PI+ + +I EALI+W Sbjct: 656 GRNRFNYFTKDMQEAAQARMHLANDLRIAVAAGQFRVYYQPIVEMSSGQIYKAEALIRWQ 715 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G +S +EF+ +AEE +I I ++ + + ++ WR + + I +N + Sbjct: 716 HPVRGMVSPAEFIPLAEETGLIVPIGEWVFRQAVQQVVQWRRKFHR-SFQISVNKSPVQF 774 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 E + + S I + +E +++ L R R GI + +DDFGT Sbjct: 775 RHAESLSW-PEYLEQQHVSGDSIIVEITEGLLLDAEVEVNKKLLRFRDAGIQVAIDDFGT 833 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL D +K + S + +A+ +II MA + +IA+ + Sbjct: 834 GYSSLSYLKEFDIDYLKIDQSFVRNLGPGTSDLALCEAIIVMAHKLGFKVIAEGVETSTQ 893 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L GCDY Q + PL + L Sbjct: 894 HELLAAAGCDYGQGYLYSRPLPPEEFERQLA 924 Score = 71.9 bits (175), Expect = 5e-10, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 7/148 (4%) Query: 388 QHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 Q + ++ + + E + A+ + D W D+ + A + G + + Sbjct: 240 QRDITKRKLTEAVMLEKESQYRAAIDTAADGFWLVDMQGRLLEVNDAYARLSGYSREELI 299 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G L I ++ + R ++ + G L+++ + D + I S S Sbjct: 300 GMSIPELDAI--DNSELVRARIEEIIRN-GGYLEFDTMHKRKDGSLWPVHISTTYSSVSG 356 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534 G R + D+TEQK++ E + A Sbjct: 357 G---RCFVFSTDLTEQKRAEESLRLAAM 381 Score = 46.9 bits (110), Expect = 0.018, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 4/129 (3%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + V + D V G+ + G + + + FR Sbjct: 8 QVQDIVDSIPAATFIKDAGGRIVYMNHACEEQWGITFDVLGGTDGS--QFFPPEQIERFR 65 Query: 466 TILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + + F A + P ++ G +L + I D+TE KK Sbjct: 66 EKDREVIAGGKQIEYEAPFWN-AKLKENRIGFFIKNPTFDAEGKLLFLVCITFDVTEDKK 124 Query: 525 SLEGILCNA 533 + + + Sbjct: 125 AAAALRLQS 133 Score = 43.0 bits (100), Expect = 0.28, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 11/120 (9%) Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYE 482 T T+ G A G + G + + ++ T + + G E Sbjct: 150 DSTIQYTNRQFETLFGYAPGELIGKHISIINA--PGNKSQMETAQEINRQLEKEGVWSGE 207 Query: 483 FRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQK-----KSLEGILCNAFQD 536 R D + + GD+ +IG DIT++K + A D Sbjct: 208 VFNRRKDGTTINTFLNASSFQHPELGDL--WIGYQRDITKRKLTEAVMLEKESQYRAAID 265 >gi|170691421|ref|ZP_02882586.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] gi|170143626|gb|EDT11789.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] Length = 1036 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 144/556 (25%), Positives = 267/556 (48%), Gaps = 14/556 (2%) Query: 407 QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 QS A+ S + + + + P I G + G L +DR+ Sbjct: 477 QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDPAEVIGHDCRVLQR---DDREQ 533 Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + R + R D W + I P+ ++ G I +IG+ ND+T+ Sbjct: 534 EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPDAEGIITHHIGVINDVTDL 592 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + E + A D+LT +PNR DRL L ++ V+ +D+D +K +ND Sbjct: 593 MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKG-VAVVFMDLDGFKNVNDS 651 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +VGD +L + R+ + + +AR G+ F +++ + + + +R SI+ Sbjct: 652 LGHSVGDRLLGVVAERLARCTRTSNTVARHGGDEFVVVMTDTVDEQSLIAWMERVRASIS 711 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P+ L E+ V S+G + + + ++K A+LAMY AK G N + ++ S Sbjct: 712 EPVWLDGTELYVGCSLGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771 Query: 703 D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ ++ L A+ +++ L Y P + + IVG EAL++W P+ G + S F+ + Sbjct: 772 AGARLNLERRLRRALRDNQFLLHYQPQVDIHTGRIVGTEALVRWRDPEVGLVPPSSFIPV 831 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I ++ ++L R +W+D +PP + +N++++ ++ + + ++ + Sbjct: 832 AEESGLIGPLSEWVLREACRQNKAWQD-LGLPPARVSVNLSARVFQQRDIAKLVMQVLDE 890 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P ++L +ES +M N E + +L L +GI L +DDFGT S LSYL P D Sbjct: 891 TGLEPRYLELELTESAIMRNAEEAVSMLNELSALGIGLAIDDFGTGYSSLSYLKRFPVDR 950 Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S ++ + I +II +A +++ +IA+ + + L CD +Q Sbjct: 951 LKIDRSFVSDIGISGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010 Query: 939 HVASPLGFNSILKLLK 954 + A PL ++I +L+K Sbjct: 1011 YFAKPLSTDAISELMK 1026 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 20/180 (11%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + DI AL ++ V + + ++ Sbjct: 313 ISADISYHALNFMGRAAFFVLAD----DVTEQINAEAEAQRSNQMLEAVIDNIPQRIFWK 368 Query: 422 DIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGY 474 D+ + A GL+ + G P R + ++ +DR+ T + Sbjct: 369 DLESRYLGCNMAFARDAGLSYPEQVVGKSDADMPWRAFAELLNAHDREVVGTGVPKM--- 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + + D + P ++ +G ++ +G DITE+K++ + + Sbjct: 426 ---NFEVDVVI---DGVHRTTVTSKLPFTDGDGRVIGVLGSYTDITERKRADLALRLQSR 479 >gi|163782780|ref|ZP_02177776.1| preprotein translocase ATPase subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881901|gb|EDP75409.1| preprotein translocase ATPase subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 1010 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 142/553 (25%), Positives = 267/553 (48%), Gaps = 17/553 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465 SLAV + D V D + + I G + + G + + H ++ ++ Sbjct: 469 LSLAVEQTSDWVLITDKEGNIQYANRAVEEISGYSVRELIGDTPKIFKSGRH--GKNFYK 526 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + + + F R D + ++ I P+ +S G+++ ++ DIT +K+ Sbjct: 527 RLWEKVLAGET--FRSVFINRGKDGKLFYLDQTITPIKDSFGNVVGFVATGKDITHEKEL 584 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A+ D +T +PNR +F++RL + + + V+ ID+D++K +ND G Sbjct: 585 KEKLNYIAYYDPVTELPNRTNFIERLKFSISRTKLLNR-NLAVLFIDVDRFKYVNDTYGY 643 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD+VL + +RI + ++ D +ARL + FG++L+ + I + ++ PI Sbjct: 644 PVGDEVLKVIAQRIKDAVREGDTIARLGSDEFGVVLVDIAHKEDIPKVMDKIFSNMEKPI 703 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR- 704 + +E+ +T S+G A + + +++K AE+A+ HAK N + FR Sbjct: 704 EVEGKEVVLTLSVGIAVFPEDGTEAEDLVKKAEMALAHAKEDVRNSYQFFREDMNTHITE 763 Query: 705 -VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 V+++ L A+E +E + Y P L + VG EAL++W+ G + S+F+ I E Sbjct: 764 LVLMERHLFRALERAEFVVHYQPYFDLKSMKAVGFEALLRWNSDDLGFVFPSKFIPILES 823 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I + ++L+ R + + +N++ D + ++ I + Sbjct: 824 TGLIIKVGEWLLKEACRLAET-------TGKSVSVNVSPVQFKDKDFPRKVERAIEECGI 876 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 I L +ES +M + E ++ L RL+K+G+ + +DDFGT S L+YL +P D +K Sbjct: 877 EGGYITLEITESTIMDDVEFAKKSLRRLKKLGVKVAIDDFGTGYSSLAYLKLLPVDFLKI 936 Query: 884 NGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + AI+ +II +AKN+ +A+ I E ++ L MGCD Q H+A Sbjct: 937 DVSFVRDIDRDPDDRAIVNAIIQLAKNLGLRTVAEGIENEKHLEILKSMGCDIGQGYHLA 996 Query: 942 SPLGFNSILKLLK 954 P+ L++L+ Sbjct: 997 RPMPEEEALRVLE 1009 Score = 93.1 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 9/127 (7%) Query: 404 GERQSLAVLGSGDIVWDW------DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYI 456 E +SL + DI++ + +V + + G + W+ + Sbjct: 2 LEGKSLFLEIINDIIYMVSFEDSDNPATAQVQYINSKVKDLTGYSPEEFIKDPSLWMTLV 61 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H D + + R+ + E+RV+ + + W+ R+ P+ + ++ ++G+A Sbjct: 62 HPKDTERVMKATLKLIK-RKESITREYRVKTKEGSYIWVEDRLIPVLEKD-RLIGFVGVA 119 Query: 517 NDITEQK 523 DIT++K Sbjct: 120 RDITKRK 126 >gi|213967691|ref|ZP_03395838.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] gi|213927467|gb|EEB61015.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] Length = 829 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 154/581 (26%), Positives = 275/581 (47%), Gaps = 12/581 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 +++ G + + SQ + + + + V D + I Sbjct: 238 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 297 Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G R H D + ++ G Q E R + + + + Sbjct: 298 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 353 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + N + ++ + DI+ K + + A D LTG+PNR F RL + L Sbjct: 354 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLH 413 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S +L V+ +D+D++K IND LG VGD +L + R+ E L+ D +ARL G+ F Sbjct: 414 SEESGSL-GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEF 472 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L A + + P E E+ ++ SIG + + + ++KNA Sbjct: 473 IVLLPGLLQPSDAKAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNA 532 Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY +K +G N VES+ S+R+ ++++L A++ ++L L Y P I L+ + Sbjct: 533 DAAMYRSKAQGRNRVESYTRDLTEQASERIALEQELRRALDRNQLSLAYQPKISLLTHTL 592 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EALI+W HP +G + F+ +AEE MI I ++LE+ R + +WR P Sbjct: 593 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGDWVLEQACRQMGAWRK-TCTPFGP 651 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+A L L E ++ L++ P ++L +E+ +M + + +L +L+++G Sbjct: 652 MSVNLAGAQLRQPNLVERIEQLLTDNGLVPDCLQLEITENFIMSQTQDALAVLHKLKQLG 711 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 + L +DDFGT S LSYL +P D +K + S + G E AI+R+II + ++++ T+ Sbjct: 712 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 771 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953 IA+ + + L+ GC+ IQ ++ PL + + L Sbjct: 772 IAEGVETHEQQQFLSEEGCEQIQGYIISLPLQPDEFSERFL 812 Score = 43.4 bits (101), Expect = 0.18, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 14/156 (8%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA- 441 V++ + A Q + E+ + A + D + + I G + Sbjct: 122 LVVVRDITALKQAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYSE 181 Query: 442 SGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + + W ++R L + R+R + + Sbjct: 182 RHCLEHSTFDLGIWADL---SERSRLIEQLKQH----GVVHGFRARLRNVNGSIRVCELS 234 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 P+ S L + I+ DITE + E + A Sbjct: 235 SHPLLISGDACL--LTISRDITESQLMQEKLHLAAT 268 Score = 43.0 bits (100), Expect = 0.27, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 38/157 (24%), Gaps = 15/157 (9%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSM 445 + ++ + + R + D + I + GL+ + Sbjct: 1 MAGLMIDISDREALRLSEGRFASVFAQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEV 60 Query: 446 HGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G L L E R + + ++ +P Sbjct: 61 IGKTPTELDLWAVPGIGPKVLQQL-----QTGNIHNLEIPFRRKNGRTFSGLMSAQPF-- 113 Query: 505 SNGDILRYIGIANDITEQKKSL------EGILCNAFQ 535 G + + DIT K++ E AF Sbjct: 114 DQGSTPAVLVVVRDITALKQAQQQLQLSEEKFAKAFH 150 >gi|28867764|ref|NP_790383.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28850999|gb|AAO54078.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 829 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 154/581 (26%), Positives = 276/581 (47%), Gaps = 12/581 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 +++ G + + SQ + + + + V D + I Sbjct: 238 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 297 Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G R H D + ++ G Q E R + + + + Sbjct: 298 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 353 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + N + ++ + DI+ K + + A D LTG+PNR F RL + L Sbjct: 354 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLH 413 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S +L V+ +D+D++K IND LG VGD +L + R+ E L+ D +ARL G+ F Sbjct: 414 SEESGSL-GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEF 472 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L A + + P E E+ ++ SIG + + + ++KNA Sbjct: 473 IVLLPGLLQPSDAKAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNA 532 Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY +K +G N VES+ S+R+ ++++L A++ ++L L Y P I L+ + + Sbjct: 533 DAAMYRSKAQGRNRVESYTRDLTEQASERIALEQELRRALDRNQLSLAYQPKISLLTQTL 592 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EALI+W HP +G + F+ +AEE MI I ++LE+ R + +WR P Sbjct: 593 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGDWVLEQACRQMGAWRK-TCTPFGP 651 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+A L L E ++ L++ P ++L +E+ +M + + +L +L+++G Sbjct: 652 MSVNLAGAQLRQPNLVERIEQLLTDNGLVPDCLQLEITENFIMSQTQDALAVLHKLKQLG 711 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 + L +DDFGT S LSYL +P D +K + S + G E AI+R+II + ++++ T+ Sbjct: 712 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 771 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953 IA+ + + L+ GC+ IQ ++ PL + + L Sbjct: 772 IAEGVETHEQQQFLSEEGCEQIQGYIISLPLQPDEFSERFL 812 Score = 43.4 bits (101), Expect = 0.18, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 14/156 (8%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA- 441 V++ + A Q + E+ + A + D + + I G + Sbjct: 122 LVVVRDITALKQAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYSE 181 Query: 442 SGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + + W ++R L + R+R + + Sbjct: 182 RHCLEHSTFDLGIWADL---SERSRLIEQLKQH----GVVHGFRARLRNVNGSIRVCELS 234 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 P+ S L + I+ DITE + E + A Sbjct: 235 SHPLLISGDACL--LTISRDITESQLMQEKLHLAAT 268 Score = 43.0 bits (100), Expect = 0.26, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 38/157 (24%), Gaps = 15/157 (9%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSM 445 + ++ + + R + D + I + GL+ + Sbjct: 1 MAGLMIDISDREALRLSEGRFASVFAQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEV 60 Query: 446 HGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G L L E R + + ++ +P Sbjct: 61 IGKTPTELDLWAVPGIGPKVLQQL-----QTGNIHNLEIPFRRKNGRTFSGLMSAQPF-- 113 Query: 505 SNGDILRYIGIANDITEQKKSL------EGILCNAFQ 535 G + + DIT K++ E AF Sbjct: 114 DQGSTPAVLVVVRDITALKQAQQQLQLSEEKFAKAFH 150 >gi|312876185|ref|ZP_07736172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caldicellulosiruptor lactoaceticus 6A] gi|311797000|gb|EFR13342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caldicellulosiruptor lactoaceticus 6A] Length = 1016 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 144/567 (25%), Positives = 268/567 (47%), Gaps = 11/567 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + E+ + D +W+ D + + + + + WL + H Sbjct: 448 ALEEEKEKYKFLIENGSDCIWEIDFKEKNIEFYGRLKDLFDIKAVKSKNDFSAWLDFFHP 507 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +DR L + L++E R+R + +HWM ++ N G + I + D Sbjct: 508 DDRSTVFKKLQDAILLHEENLEFEARIRDKNGNWHWMSAHVQIFYNEEGKPEKIIAVNID 567 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 T +K+ + I A+ D LT +PNR+ F + L + + ++ + V++IDID +K Sbjct: 568 WTAKKEYEQKIEYIAYYDALTSLPNRKLFEEVLEDFIKKA-EEEKAQGAVILIDIDNFKD 626 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADFAI 635 IND+ G GD+ L ++ +++ E LK AR+ G+ F ++L ++ + Sbjct: 627 INDLYGHEAGDEYLKAVCQKVLEYLKSLNLNTFFARVGGDEFAVVLHGLAKKEEVIEVCT 686 Query: 636 AMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + I + ER++ +AS+G + + + E+ +N ++A+ AK G N + Sbjct: 687 HLLNIFESEIYIEKLERDLFASASMGISFYPDDGRSVKEIFRNVDMALSSAKENGKNDFQ 746 Query: 694 SF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + ++ I++ L A+E + L Y P+I L D EI +EAL++W P+ G Sbjct: 747 IFLPFMLTKNLKKIEIEKGLKKAIETDQFELYYQPVINLKDMEIHSVEALLRWISPEKGM 806 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I I ++E+ D+ W + + + IN++++ Sbjct: 807 ISPLEFIPVAEESGLIVKIGEMVIEKAFSDLKEWEKKGIDY-LHMAINLSARQFKTKFFE 865 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +Q LI + P +I +E+ + N + S +L L ++GI +DDFGT S L Sbjct: 866 NMVQKLIERYSIDPKKISFEITETGAVENFDVSLKILSFLCQMGIKFLIDDFGTGYSSLI 925 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P VK + S ++ +++ AI+ II MA I+ ++A+ + + ++ L Sbjct: 926 YLKRLPIGGVKIDRSFISELEVSKENKAIVEGIILMAHKIDLKVVAEGVETKRQLEILKE 985 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD Q + PL + KLL R Sbjct: 986 VGCDLAQGYLFSKPLPKAEVEKLLIAR 1012 Score = 65.4 bits (158), Expect = 5e-08, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 4/165 (2%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 N I + + L++I+ + G + + L + IV ++ Sbjct: 258 NRQIVISSLYLLLIILFAASVAIFVMTRINRRLEHGKQAYEKYAQLLAENANAIVLTLNL 317 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYE 482 + + + G S + G W+ I + R+ + + +E Sbjct: 318 NGEIIYFNKFAQELTGYKSEEVVGKK--WVDIFIPPHRREYIENLFKRIAEEKILN-NHE 374 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + D W++ + + + I DIT+ K + + Sbjct: 375 NEIVTKDGDIKWILWNNTLIESPYLNEPMIISTGLDITQIKTTQQ 419 >gi|149375006|ref|ZP_01892779.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Marinobacter algicola DG893] gi|149360895|gb|EDM49346.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Marinobacter algicola DG893] Length = 804 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 160/586 (27%), Positives = 273/586 (46%), Gaps = 21/586 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL----------AVLGSGDIVWDWDIVRDRVTTTPDIA 435 + Q +A + + D ERQ A+ S V D + Sbjct: 217 LAQVTVAINQMRERLNDDLERQERDAQEIRKFSKAIEQSPSSVLICDRQWRIEYANQKFS 276 Query: 436 TILGLASGSMHGPIRNWLP---YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 + G + + G + H +R +++I R G Q E + + Sbjct: 277 QLTGYDNAVICGKHPGMVSEDAQAHRENRQLWQSI--RLQVQRVGVWQGEINSVRKNGER 334 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 W + + P+ NS GD Y+ + DI+ +K+ + +L A D LTG+PNR LDRL Sbjct: 335 FWEQLIVTPIKNSKGDATGYLILGEDISIRKRYEQQLLRQANYDILTGLPNRMLALDRLK 394 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 L + + +L VM +D+D +K IND LG GD++L+ RRI L+ +ARL Sbjct: 395 LALAQARRESSL-VGVMFLDLDNFKHINDTLGHDAGDNLLIEAARRISSCLRGTSTVARL 453 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F +IL + A + K+ A P L +E+ VT SIG + + + S Sbjct: 454 GGDEFLVILPGLTGPEATSQVAERILKTFAPPYLLNGQEVFVTTSIGISIFPNDSDNSGT 513 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 +L++A+ AMY AKH+G + F +R+ ++ + A+E E L Y PI+R Sbjct: 514 LLQHADAAMYQAKHKGKSAYAHFAPEMTEVSHERLQMESLMRRALEQKEFELYYQPIVRT 573 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 ++ EAL++W++P G + F+ +AEE +I I ++L+ + W+ Sbjct: 574 ESGQLCSAEALLRWNNPGMGMVMPDRFIPLAEETGLITPIGEWVLQEACLAAMRWKASTG 633 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 I I +N++ + D + + + + P +++L +E +++ N + +L + Sbjct: 634 -TDIGISVNVSPRQFRDPGFVDTVMNALDASGLPPQQLELEITERLILDNTIETADILRQ 692 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 L + GI L++DDFGT S LSYL PFDT+K + S + + +++++II MA + Sbjct: 693 LDQSGIRLSVDDFGTGYSALSYLKSYPFDTLKIDKSFVQDVMKEREDASLVKAIINMAHS 752 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + +IA+ + E L GCDY Q + PL N + LK Sbjct: 753 LGLRVIAEGVEEEAQTHFLQHEGCDYSQGYFYSRPLPENEFQQWLK 798 >gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300074656|gb|ADJ64055.1| EAL domain containing protein [Herbaspirillum seropedicae SmR1] Length = 1036 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 141/556 (25%), Positives = 258/556 (46%), Gaps = 18/556 (3%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 S + + D + I G ++ + G N L DR + Sbjct: 483 SREGMLITDANSKILRVNKAFTEITGYSAEEIVGKHPNLLRS----DR-HGPAFFQEMRE 537 Query: 474 --YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 R G+ Q E R + + + + I + N + + Y+ +DI+++K + E I Sbjct: 538 SIRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKDQQVTHYVSTHHDISDRKLAEERIRE 597 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 AF D LT +PNR LDRL + LS ++ ID+D +K +ND +G GD + Sbjct: 598 LAFFDALTRLPNRTLLLDRLKQAIALSLRT-KTCAALLFIDLDHFKTLNDTIGHEKGDTL 656 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA-----MRKSIAMPIN 646 L + +R+ ++ D +AR+ G+ F ++L N + A + ++ Sbjct: 657 LKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNELQQEAATQTRAIGEKILTALGSTYQ 716 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DR 704 L + E TASIG + + E++K A+LAMY AK G N + F + + +R Sbjct: 717 LDDVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQTAVLER 776 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ L A++ ++L L Y P + + + G E L++W HP+ G + +F+ +AEE Sbjct: 777 ATLEAGLRKAIDGNQLLLHYQPQV-VEGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEET 835 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I ++ ++LE R + +W Q M + I +N+++ L + + + + I +T + Sbjct: 836 GLILSLGNWVLETACRQLATWAAQPQMADLSIAVNVSAPQLREPDFVQTVLDTIERTGAN 895 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P R+KL +ES+++ N E + L+ G+ +LDDFGT S LSYL +P + +K + Sbjct: 896 PRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKID 955 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + +I ++I+ +A+++ +IA+ + + L GC Q Sbjct: 956 QSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYFFCR 1015 Query: 943 PLGFNSILKLLKERFP 958 P+ + K +E P Sbjct: 1016 PVTVEAFEKFAQEFDP 1031 Score = 89.2 bits (220), Expect = 3e-15, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 7/194 (3%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS---QGI 400 W L + A R +I + + + +L V V A + Sbjct: 288 WTLTLRTN-AAFHAQFGRNAEPLIATTGIAMSLSLALLAWLMVSSRVRAVRLAQKMTAEL 346 Query: 401 FSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E+ + + VW W + + G H Sbjct: 347 RASEEQFRAIADCTVNWEVW-WGLDGRPRWINHAVLDYTGYTVEECLAMDDFIGTIAHPE 405 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D R L + ++ R E R D W+ + P+ ++ G + + DI Sbjct: 406 DEPRIRAELARCMDGQK-REDVELRCVRKDGSVFWLALSCAPIHDAQGRFTGFRTSSRDI 464 Query: 520 TEQKKSLEGILCNA 533 T++K+ + +A Sbjct: 465 TDRKQIEAELRISA 478 >gi|126176406|ref|YP_001052555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS155] gi|125999611|gb|ABN63686.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS155] Length = 733 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 149/593 (25%), Positives = 281/593 (47%), Gaps = 15/593 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 P L + + + + + Q R + S + + D Sbjct: 129 PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 188 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P I G + G + L H +F T + + G+ + E + Sbjct: 189 LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 244 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + Q + + I + N G I+++IG+ DI+++K+ + + A D LTG+PNR+ F Sbjct: 245 KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 304 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL + ++ D + +++ID+D++K INDV G A GD +L + +R+ + D Sbjct: 305 NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 363 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +AR+ G+ F +IL N L I A + +++ MP +L +REI ++AS G + Sbjct: 364 FIARIGGDEFVLILPRLTNELAIEHMATRIIETLGMPFDLNDREIQISASFGIGVYPEDG 423 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S + +N E AMY AK G N+ + F ++ R+ +++ L AV +E L Y Sbjct: 424 LDVSSLTRNTETAMYQAKDAGRNNFKYFTAGMNEAMFARMELEQRLRRAVAQNEFALHYQ 483 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ + + +EALI+W P +G I +F+ +AEE +I+ + ++L + D+ W Sbjct: 484 PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 543 Query: 786 RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + I + IN++ + ++ + +Q ++ +P + + +ES++MG+ Sbjct: 544 QKSG--LKINVAINVSGRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 601 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L +R +G + +DDFGT S LSYL P +K + S + + + +++ Sbjct: 602 HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 661 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +I+ M +++E ++A+ I E L +GC + Q ++ PL F+ I LL Sbjct: 662 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 714 >gi|217974216|ref|YP_002358967.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217499351|gb|ACK47544.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS223] Length = 921 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 144/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA S + V D + I G + G R + H Sbjct: 368 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 425 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D+ F + ++ + G+ E R + I I + + GD+ ++ + DI Sbjct: 426 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 483 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK++ + A+ D LT +PNR F+ +L + + NL+ ++ID+D +K I Sbjct: 484 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 542 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ + D+L+R+ G+ F ++ +NS +R+ Sbjct: 543 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNSEDATVAINQLRQ 602 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TAS+G + + S + +L+NA+ AMY AK+ G N+ + S Sbjct: 603 VFEQPFIVSTGDHLRLTASMGVSLYPSDGADADTLLRNADAAMYRAKNDGRNNYAFYTES 662 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L+ + VG EAL++W P+ G IS + Sbjct: 663 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVTRKTVGFEALLRWHDPQLGLISPAI 722 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I I L++LE R + W + I +N+A + L + + ++ Sbjct: 723 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 781 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T ++L +ESV+M NP+ + L L +GI L++DDFGT S L+YL + Sbjct: 782 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 841 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ IIA+ + + L + CD Sbjct: 842 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 901 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q + P + L Sbjct: 902 AQGYLFSRPQLPEDLDAFLS 921 >gi|304409412|ref|ZP_07391032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|307303770|ref|ZP_07583523.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] gi|304351930|gb|EFM16328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|306912668|gb|EFN43091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] Length = 920 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 144/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA S + V D + I G + G R + H Sbjct: 367 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 424 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D+ F + ++ + G+ E R + I I + + GD+ ++ + DI Sbjct: 425 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 482 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK++ + A+ D LT +PNR F+ +L + + NL+ ++ID+D +K I Sbjct: 483 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 541 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ + D+L+R+ G+ F ++ +NS +R+ Sbjct: 542 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNSEDATVAINQLRQ 601 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TAS+G + + S + +L+NA+ AMY AK+ G N+ + S Sbjct: 602 VFEQPFIVSTGDHLRLTASMGVSLYPSDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 661 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L+ + VG EAL++W P+ G IS + Sbjct: 662 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAI 721 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I I L++LE R + W + I +N+A + L + + ++ Sbjct: 722 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 780 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T ++L +ESV+M NP+ + L L +GI L++DDFGT S L+YL + Sbjct: 781 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 840 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ IIA+ + + L + CD Sbjct: 841 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 900 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q + P + L Sbjct: 901 AQGYLFSRPQLPEDLDAFLS 920 >gi|89899824|ref|YP_522295.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89344561|gb|ABD68764.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 1051 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 148/628 (23%), Positives = 269/628 (42%), Gaps = 22/628 (3%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + + G+ + + L G + A + Sbjct: 433 FMQGVMATGQSLEGIELRLRHLDGGWRWFHTNAVPLKNET---GKVIGLQGSAMDVTVRK 489 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + R + S + + + + I G G L Sbjct: 490 LAEEDTRIAATAFESQQGMIITNAEKVILRVNKAFTEITGYTMEEALGQTPRLLKS---- 545 Query: 460 DR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DR F + + V R G Q E + + + + I + ++ G + Y+G+ + Sbjct: 546 DRHDAGFYGAMWASVA-RSGSWQGEIWRQRKSGEQYPEWLSINAVKDAAGLVTHYVGVFS 604 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+K S E I AF D LTG+PNR+ +DRL L +A + + ++++D+D +K Sbjct: 605 DITERKISEEKIDRLAFYDALTGLPNRRLMIDRLQQALAATARH-HCKGALLLVDLDNFK 663 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IAD 632 +ND LG GD +L RR+ L+ D +AR+ G+ F +++ + S + Sbjct: 664 TLNDTLGHDQGDLLLQHAARRLSACLRESDTVARVGGDEFIVLMEDMSQSDQEVATQAKA 723 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNH 691 + ++ P TASIG + + ++ E +K ELAMY AK G N Sbjct: 724 LGEKIIDTLGQPYQFGSSSHYSTASIGITLFDGAQQESTEEPMKQVELAMYQAKAAGRNT 783 Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F ++ L A+E ++ L Y + + +I G+EAL++W P+ Sbjct: 784 LRFFDPQMQAVVTARAVLENGLREALEQNQFLLHYQAQM-VGGRQITGVEALVRWRDPRR 842 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S EF+ +AEE +I ++ ++LE + W +A M + + +N+++ + Sbjct: 843 GMVSPVEFIPLAEETGLILSLGQWVLETACTQLARWATRAEMEHLTVAVNVSANQFQQGD 902 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 E + A++ +T +P+R+KL +ES+++ N E + L+ G+ +LDDFGT S Sbjct: 903 FVEQVLAVLERTGANPNRLKLELTESMLISNVEGVIAKMSALKGRGVCFSLDDFGTGYSS 962 Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL +P D +K + + AI + +I +A+++ ++IA+ + E L Sbjct: 963 LSYLKRLPLDQLKIDQGFVRDILIDSNDAAIAKMVIALAESLGLSVIAEGVETEAQRDFL 1022 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 +GC Q PL L+ Sbjct: 1023 AGLGCHAYQGYLFCKPLPLEEFEAFLQR 1050 Score = 99.3 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 15/251 (5%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343 + +G IA+L + P+ + + + + ++ Sbjct: 265 RVPVAGWVAIALLPTAEAFAPINVMHQRMLLTTLFLTLLAGALTWWVLRRE--------- 315 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + ++ + + D + L + + + + + Sbjct: 316 ----LLPLFKAARSLATQAETDQLPQPLPLTRQDETDQLISGFNRLLQTLTRREESLKES 371 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 E+ + S D+++ + +LG + G ++H D Sbjct: 372 EEQHRRLIDNSHDVIYTLTKAGVFTFMSSAWTALLGHPLNQVVGQ--TVFTFVHPEDVAV 429 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + + E R+R D + W P+ N G ++ G A D+T +K Sbjct: 430 CTAFMQGVMATGQSLEGIELRLRHLDGGWRWFHTNAVPLKNETGKVIGLQGSAMDVTVRK 489 Query: 524 KSLEGILCNAF 534 + E A Sbjct: 490 LAEEDTRIAAT 500 >gi|330878420|gb|EGH12569.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 825 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 151/581 (25%), Positives = 272/581 (46%), Gaps = 12/581 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 +++ G + + SQ + + + + V D + I Sbjct: 234 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 293 Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G R H D + ++ G Q E R + + + + Sbjct: 294 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 349 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + N + ++ + DI+ K + + A D LTG+PNR F RL + L Sbjct: 350 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYRAHHDPLTGLPNRTLFESRLQSALLH 409 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S +L V+ +D+D++K IND LG +GD +L + R+ E L+ D +ARL G+ F Sbjct: 410 SEESGSL-GAVLFLDLDRFKHINDSLGHPIGDLLLKGIAHRLKETLRDIDTVARLGGDEF 468 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L A + + P E E+ ++ SIG + + + ++KNA Sbjct: 469 IVLLPGLLQPGDAKAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNA 528 Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY +K +G N VES+ +R+ ++++L A++ +L L Y P I ++ + Sbjct: 529 DAAMYRSKAQGRNRVESYTRDLTEQARERIALEQELRRALDRKQLSLAYQPKISILTHTL 588 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EALI+W HP +G + F+ +AEE MI I ++LE+ R + +WR P Sbjct: 589 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGEWVLEQACRQMGAWRK-TCTPFGP 647 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+A L L E ++ L++ P ++L +E+ +M + + +L +L+++G Sbjct: 648 MSVNLAGAQLRQPNLVERIEQLLTDNGLVPDCLQLEITENFIMSQTQDALAVLHKLKQLG 707 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 + L +DDFGT S LSYL +P D +K + S + G E AI+R+II + ++++ T+ Sbjct: 708 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 767 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953 IA+ + + L GC+ IQ ++ PL + + L Sbjct: 768 IAEGVETREQQQFLCEEGCEQIQGYIISLPLQPDEFSERFL 808 Score = 42.2 bits (98), Expect = 0.40, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 14/156 (8%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 +++ + Q + E+ + A + D + + I G + Sbjct: 118 LVIVRDITRLKLAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYSE 177 Query: 443 -GSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + + W ++R L+ + R+ + + Sbjct: 178 LHCLEHSTFDLGIWADL---SERSRLIEQLEQH----GVVHGFRARLCNVNGSIRVCELS 230 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 P+ S L + I+ DITE + E + A Sbjct: 231 SHPLLISGDACL--LTISRDITESQLMQEKLHLAAT 264 Score = 41.9 bits (97), Expect = 0.54, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 34/147 (23%), Gaps = 15/147 (10%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + R + D + I + GL+ + G L Sbjct: 7 REALRLSDGRFASVFTQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEVIGKTPTELDL 66 Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 L E R + Q ++ +P G + Sbjct: 67 WAVPGIGPKVLKQL-----QTGNIHNLEIPFRRKNGQTFSGLMSAQPF--EQGSTPAVLV 119 Query: 515 IANDITEQKKSL------EGILCNAFQ 535 I DIT K + E AF Sbjct: 120 IVRDITRLKLAQQQLQLSEEKFAKAFH 146 >gi|325981725|ref|YP_004294127.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] gi|325531244|gb|ADZ25965.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] Length = 1136 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 159/613 (25%), Positives = 285/613 (46%), Gaps = 22/613 (3%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + AI R + Q L GL+ L+ +Q V A Q Sbjct: 521 AGKVLGTFAIYHRTPREPSQADL--GLINEFALLTALAVQKVYAAESLKQAAA------- 571 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTI 467 + + V D+ V A I G + + G R H D+ ++ + Sbjct: 572 -VFESTREGVVITDLQPRIVAINRAYAEITGYSEEQVLGKNPRIIKSGRH--DKLFYQAM 628 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S + G + E R + + I + N + Y+G+ DIT+ K+S Sbjct: 629 WASL--TKAGYWRGEVWNRRRSGDIYPQWLTISTVFNDRNEPCNYVGVFTDITQIKQSEA 686 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A D LTG+PNR RL ++ + N + + +D+D++K +ND LG + Sbjct: 687 RLAHLAHYDALTGLPNRLLVQSRLHHAIERTLRHGN-QIAALYLDLDRFKNVNDSLGHPI 745 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD++LV L R+ + L+ D LARL G+ F ++L +S + A A + +A P +L Sbjct: 746 GDELLVMLALRLKKRLREEDTLARLGGDEFLVVLEDIKDSNEPAMVAQTLIDLLATPFSL 805 Query: 648 -LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 EI + SIG + + + + +E++++A++AMY AK G N S ++R Sbjct: 806 PSGHEIFINTSIGISLFPTDANSVTELIQHADMAMYLAKQEGRNTYRYHTDALSIAANER 865 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++++ L A+ E L Y P+I +++G+EAL++W P +S +F+ IAEE Sbjct: 866 LVLETQLRQALSAGEFVLHYQPLIDARKGQVMGVEALVRWQPPDKAMVSPGKFIPIAEET 925 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + ++L +W D + PP+ + +N++ + L E ++ ++ +T Sbjct: 926 GLIVPLGEWVLRTACAQGRAWMDA-DFPPLVMAVNLSVRQFQSENLVELIRQVLEETKLP 984 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + ++L +ES+ M + E+S +L L+ +G+ L++DDFGT S L+YL P D +K + Sbjct: 985 AACLELELTESMFMEHAEQSIEILKTLKSLGVRLSIDDFGTGYSSLTYLKRFPIDKLKID 1044 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + G I +II MA+N++ ++A+ + E + L + GCDY Q Sbjct: 1045 QSFVHGLAYDPNDREIAATIIAMARNLKLDVLAEGVESEQQLDILNQHGCDYYQGYLFHR 1104 Query: 943 PLGFNSILKLLKE 955 P+ + +E Sbjct: 1105 PVPAQELEVWFRE 1117 Score = 85.0 bits (209), Expect = 6e-14, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 93/268 (34%), Gaps = 15/268 (5%) Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 H + + + + L + PM A+ + L + T + + Sbjct: 152 HLALYAPHIHLTAVTDVHHALALLPI---DPMEQATQFDVLLLENCISGTDDLALIKLLR 208 Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 ER L +P ++ +D + L +QH Sbjct: 209 NER-RLDLPIVLVTDQGSEIAVARALHMGVDDYLTKHAGY---LYETTAILEKVQHQAEL 264 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR---DRVTTTPDIATILGLASGSMHGPIR 450 + R S + S I+++ +V V + +I +LG + Sbjct: 265 ARERISLKKTSLRLSDLLAASPTILYNLRVVGTTFQLVWVSENIERLLGYTQEEVMAE-G 323 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W ++H +DR+ T + G+L Y++R+ + Q W+ +R + + NG L Sbjct: 324 WWNLHVHPDDREAALTHQSELLA--VGQLTYDYRLLHRNGQSVWIHDELRLVRSINGKPL 381 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNL 538 +G D++E K++ ++ A Q L Sbjct: 382 EVVGAWLDVSEHKRT--ELIRQAHQSAL 407 >gi|317152447|ref|YP_004120495.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316942698|gb|ADU61749.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 857 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 143/585 (24%), Positives = 266/585 (45%), Gaps = 11/585 (1%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 ++ + + + ++ + + ++ ++ P +A I Sbjct: 270 ELLRANTQLKIEIAERKVIGDALRKAEKKYRTIFENALEGIYQTSPSGRFLSANPSLARI 329 Query: 438 LGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 LG ++ M G + + +++ R + + +VR D + W+ Sbjct: 330 LGFKSADEMMGSVYDIGTQMYLE--PGRRKEFLRLIEETGEVKNFVSKVRRRDGRIIWIS 387 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 R +++++G ++ Y G DIT +KK+ + + AF D LTG+PNR FLD L ++ Sbjct: 388 ENARRITDADGSVMCYEGSVEDITLRKKAEDQLKRQAFHDPLTGLPNRALFLDHLRMAME 447 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 +L V+ +D+D++K IND LG GD++L S+ R + + + D +AR G+ Sbjct: 448 RGRRRRHL-FAVIYMDLDRFKVINDSLGHETGDELLRSVARVLEKCGRSVDTIARFGGDE 506 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I++ + S A + + P + E+ +AS+G T +L++ Sbjct: 507 FAILIEEISASRDAIAIARRILDGVRQPFTINGNEVFTSASLGIVLKTDGYDRPEALLRD 566 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK G + + F + + ++ DL AV+ E + Y PI+ L Sbjct: 567 ADTAMYRAKEHGKSRFKVFNQKMHDQALRLMALETDLRRAVDLREFEVAYQPIVCLDTRR 626 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-- 792 + G EAL++W HP+ G I +F+ +AE+ +I AI+ F+L + W+ Sbjct: 627 VCGFEALVRWRHPEHGVILPGDFISLAEDTGLIYAIDNFVLVAACAQVKLWQTTFGHLMG 686 Query: 793 -PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + INI+ K L + + + +P + + +ES +M NP + +L +L Sbjct: 687 ELLTLNINISGKHFGQPMLLSQVTRALDDSGLNPQALNIEITESALMDNPAVAEEVLKQL 746 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909 + +G + +DDFGT S LSYL P D VK + S + G AI+R++ + +++ Sbjct: 747 KSLGAKVCIDDFGTGYSSLSYLQRFPIDVVKVDRSFIDGVEGNLDSQAIVRTVFSLGESL 806 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 I+A+ + + L GC Y+Q PL + +LL Sbjct: 807 GLKIVAEGVETPAQLAFLENEGCRYVQGFLFYRPLSATEVDELLA 851 >gi|253995796|ref|YP_003047860.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253982475|gb|ACT47333.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 976 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 142/557 (25%), Positives = 251/557 (45%), Gaps = 16/557 (2%) Query: 404 GERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 ++ +A S + + + + + I G + G N L Sbjct: 408 EQQLRIAATAFESQEGIVVTNENFNILRVNQAFIDITGYEAEEATGKKPNILKS-GRQSG 466 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + +R I S G E R + + + + I + +++G Y+G+ DI+ Sbjct: 467 EFYRNIYTSLRE--TGSWSGEIINRRKNGEIYPEHLTITAVKDADGQTTNYVGMFTDISV 524 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 K + E I AF D LT +PNR+ F DRLT L S N ++ +D+D +K +ND Sbjct: 525 AKAASERIENLAFFDPLTNLPNRRLFSDRLTQALVNSTRSGNY-GALVFLDLDHFKSLND 583 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-----SENNSLKIADFAIA 636 LG GD +L + R+ ++ D +ARL G+ F +++ + +I Sbjct: 584 TLGHDYGDMLLKQVALRLSNCVREGDSVARLGGDEFVLLVENLSANDVEAAHQIEAIGDK 643 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + S+ P L E T SIG + + + +S ++LK+A++AMY AK G N + F Sbjct: 644 ILMSLNQPYQLQSHEYLSTPSIGISLFNGHQESSEDLLKHADIAMYQAKKAGRNTLRFFD 703 Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + ++ +L A+E + L Y + + G EALI+W HP+ G IS Sbjct: 704 PLMQETINMRVDLERELKKAIEQKQFELYYQVQMN-SAGQPSGAEALIRWRHPERGIISP 762 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++L + + +W+ + IN+++K L + + Sbjct: 763 IQFIPVAEETGLITQIGEWVLNQACLQLQAWQLDQASKDFSLAINVSAKQFLQPDFANQV 822 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + I +++KL +ES+++ N E + L +IGI +LDDFGT S L YL Sbjct: 823 KNSIRSFHIDNTKLKLELTESMLIDNIEYVIHTMNTLGEIGIQFSLDDFGTGYSSLQYLK 882 Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P +K + S + I+ +II MA ++ +IA+ + + ++ L GC Sbjct: 883 MLPLSQLKIDQSFVRDLATDNSNKTIVLTIITMAHSLGLNVIAEGVETDEQLQLLNAHGC 942 Query: 933 DYIQDSHVASPLGFNSI 949 Q + + PL N Sbjct: 943 GNYQGYYFSEPLSINEF 959 Score = 147 bits (371), Expect = 1e-32, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 1/154 (0%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + V + A + + + R A+ G+GD VWDW+I D + +LG Sbjct: 263 LEEEVARRTQALKENIEELKNSEFRWKFAIEGAGDGVWDWNIATDEAQYSKRWKEMLGYD 322 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + W +H +D + + ++ + E+R++ DN++ W++ R Sbjct: 323 ENELLPTNQEWADRVHHDDVAYVKQTMQDYLEGKTALYVVEYRLKCKDNRYKWILGRGMI 382 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + G+ LR IG DITE+KK + + A Sbjct: 383 VSRDDQGNPLRMIGTHTDITERKKIEQQLRIAAT 416 >gi|271501902|ref|YP_003334928.1| PAS/PAC sensor-containing diguanylate cyclase [Dickeya dadantii Ech586] gi|270345457|gb|ACZ78222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dickeya dadantii Ech586] Length = 689 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 144/563 (25%), Positives = 259/563 (46%), Gaps = 11/563 (1%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E+ +A + + + D R+ ++ P + G + + G N Sbjct: 122 ERQKAREQMKIAATVYESTQEAIIVIDTNRNIISINPAFTRLTGYSEADIVGKPSNIFQS 181 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 +D + I + G E R D + + I + ++ G + Y+G+ Sbjct: 182 -DRHDIAFYNAIWRTV--NEDGLWVGEMWDRKKDGSDYLRELTINMVKDAAGTPINYVGV 238 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DIT++KK E I A D +T +PNR F D+L ++ + +M+ID+D Sbjct: 239 FSDITQRKKQEELIWRQANYDAVTALPNRHRFQDKLERAVERAKQTGR-PMALMLIDLDH 297 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG GD +L +++ RI + ++ D +AR+ G+ F IIL + A Sbjct: 298 FKSVNDSLGHRAGDALLFAVSTRITDCIQNADTIARIGGDEFAIILSDLLRTDDCGRLAN 357 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + +A P N+ + V+ASIG A + + T E+ K+A+ AMY AK G N F Sbjct: 358 TLLQRLAKPFNIDGENMLVSASIGIAFYPNDSDTLEELFKHADQAMYSAKSAGRNGFHYF 417 Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 R+ + DL A+E+++ + Y PII L I EAL++W HP+ G +S Sbjct: 418 TPALHQAARARLRLTNDLRQALESAQFEVYYQPIIELATNRITKAEALVRWHHPERGLVS 477 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE- 812 +EF+ +AE+ +I + ++ ++ + WR+ P I IN + L + E Sbjct: 478 PAEFIPLAEDTGLIVPLGDWVAQQAIIQLAQWRN-TLDPHFQIAINQSPIQLRSKDFTEM 536 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 +++ + + + +E +++ R L LR GI + +DDFGT S L+Y Sbjct: 537 TWVQELARYGLDGNAVIIEITEGLLLNAELRVNNNLHLLRDAGIQIAIDDFGTGYSSLAY 596 Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 L D +K + S + + + +II MA ++ ++A+ + + LTR+GC Sbjct: 597 LRKFNIDCLKIDRSFIEDLDGIGLELCVAIIAMAHSLGLNVVAEGVETQHQCDILTRLGC 656 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 DY Q + P+ + +L+ Sbjct: 657 DYAQGFLFSRPVPAPELTTMLQA 679 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 6/137 (4%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 ++ + + + VT P + I G M + Sbjct: 4 SAWNSESLFQGILDRCPVGIAVINYDGKYVTVNPAYSAIYGYTQEEMVNHP---FTMVFP 60 Query: 459 ND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 R + SF+ G+L E+ V D + P + R + + Sbjct: 61 ESTRPSVLARHQSFLDE-GGKLGGEWTVVRHDGAVLTVWSESVPFAQHGQKADRLVYVL- 118 Query: 518 DITEQKKSLEGILCNAF 534 DITE++K+ E + A Sbjct: 119 DITERQKAREQMKIAAT 135 >gi|307825343|ref|ZP_07655562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307733518|gb|EFO04376.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 827 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 175/834 (20%), Positives = 329/834 (39%), Gaps = 66/834 (7%) Query: 179 NFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238 + ++ + G+A A+ L I S + W+ + Sbjct: 2 DNFRLLIEQHMDVVFFTYGLAF-FALGLAILVQPKEESRYEISQLAGWLASFGLVHGTLE 60 Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY------------LHWNRWHAKVGYIT 286 L + G+ + + + L S +FLF + ++ Sbjct: 61 WLSLWKIIHGDSAVLSLLNIVFLLVS-YVFLFEFGRRLTRSILDKIPSIPNLVKRMLGAP 119 Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE----------- 335 G+ +A LF + + A + I + + Sbjct: 120 IYGVVALAFLFELLTVPDRMLAMTIATRYFLGCIGSFLTGIGFLLSINKKSSMYIEKSVF 179 Query: 336 --RAVLLIPAWILIFIWFIGL------WMAITKRLDNDIIQP-------------ALVGG 374 + A F + + ++ + ND + V Sbjct: 180 SWSTKYFVLATAAFFFYGVLSCFVAYPANIVSGSVFNDQWFLEKFHFPVQMFRAASAVLA 239 Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTP 432 + I ++ ++ + + ++ + + D V Sbjct: 240 AIAIGNILRLFHMEVREKLLSSLKSAKEAEAKLRISAHAFDVQEGILITDTNNVIVRVNR 299 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADN 490 I G + + L R N F + + G + E + + Sbjct: 300 AFTHITGYTTEDVMDKNPRILSS----GRQNTSFYAAMWESI-NTNGAWKGEVWNQKKNG 354 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 +++ + + + +++ ++ Y+GI DIT + + + I AF D LT +PNR DR Sbjct: 355 EYYLEDLTVSAVKDTHANVTHYVGILTDITMNRAAADKIEHQAFYDTLTDLPNRLMLRDR 414 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 LT L LS +++ ++ ID+D +K +ND LG +GD +L + R+ ++ D +A Sbjct: 415 LTPALALSQRNNH-NGALLFIDLDNFKTLNDTLGHDIGDLLLQQVAERLVACVREGDTVA 473 Query: 611 RLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 RL G+ F I+L + +I + + L T SIG + Sbjct: 474 RLGGDEFVIMLEDLSEHANEAIVQIEVIGNKVLGVFSQSFKLTTHNYHCTPSIGITLFKG 533 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLV 723 +T E+LK A++AMY AK G N + F + +RV +++DL LA+ ++ L Sbjct: 534 QNLTIDELLKQADIAMYQAKASGRNAMCFFDPQMQTNITNRVALEKDLKLALAENQFMLY 593 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P + L ++I+G EALI+W HP+ G + +F+ +AEE +I I ++LE I Sbjct: 594 YQPQV-LHSQKIIGAEALIRWHHPQRGLVPPVDFIPLAEETGLILPIGQWVLETACAQIK 652 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 SW D + + I +N++++ + E + ++S +P+ +KL +ES+V+G+ Sbjct: 653 SWEDNEHTRHLQIAVNVSARQFHQTDFVEQVSHILSHNDINPANLKLELTESLVLGDINN 712 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + L + +LR+IGI ++DDFGT S LS L +P + +K + S + I+++ Sbjct: 713 TILKMRKLREIGIRFSMDDFGTGYSSLSSLKKLPINQLKIDQSFIRDITSDHDDAIIVQT 772 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 II MA ++ +IA+ + E L +GC IQ P+ LLK+ Sbjct: 773 IIAMATSLGMEVIAEGVETEEQRAFLELLGCPAIQGYLFGRPMPIEQFEALLKK 826 >gi|311029427|ref|ZP_07707517.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus sp. m3-13] Length = 585 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 155/573 (27%), Positives = 272/573 (47%), Gaps = 10/573 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 ++ + + ++ +GDI + D++ ++ P I G M Sbjct: 16 ARDIVKLNRMMKTSDQQYKSLFEHNGDIAFSVDLLGRIISVNPKFKEIFGFTEKKMLRKS 75 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L +I D + + + E + D + +I+ P+ +G Sbjct: 76 A--LNFIKAKDIERVTDHFFKALNGMEQTYEIE--LIQKDGEESTYLIKHIPIV-IDGVR 130 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 GI DIT QKK+ E + A+ D T +PNRQ+F + L L+ S + V+ Sbjct: 131 TGVFGIGRDITAQKKAEEKVAYLAYYDPATALPNRQNFHESLKVKLEESKKS-KEKLAVL 189 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ID D++K IND LG VGD++L RI LL LAR G++F + + + Sbjct: 190 FIDFDRFKLINDSLGHLVGDELLKWEIERISALLPANCYLARFGGDKFSLSYTGFESIDE 249 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A A+ +I PI LE+E VTASIG + + + IT+ +LKNA+ AM AK GG Sbjct: 250 VITMAKAILTTIKQPIRYLEKEFYVTASIGVSLYPNDGITAESLLKNADAAMNQAKKLGG 309 Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N ++ + R+ ++ L A+E +E +L Y P I + + ++G EALI+W+HP Sbjct: 310 NRIKFYSDEMNSQALYRIELESYLRKALEKNEFFLCYQPFIDIDSDTVIGAEALIRWNHP 369 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 K G + ++F+ +AEE +I I ++LE +W+ + I +N++++ Sbjct: 370 KLGLVPPADFIPLAEETGLIIEIGGWVLETACVHTKNWQQVEGYQELNISVNVSAQQFQQ 429 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ ++ + S + L +ES ++ N S ++ L+ +G+ +++DDFGT Sbjct: 430 PSFVSEVKHALTTSGLSACHLHLELTESAMLKNASYSIEVMKELQGLGVKISVDDFGTGY 489 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL +P + +K + S + K +AI+ +II M K + +IA+ I E + Sbjct: 490 SSLSYLRDLPINNLKIDRSFIKNLRAESKDLAIVHAIITMGKGLNLNVIAEGIETEEQLS 549 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 L ++ CD Q +++ P K + + P Sbjct: 550 ILRQLTCDVAQGYYLSKPKEQTEFEKFMNDSQP 582 >gi|119471269|ref|ZP_01613772.1| PAS sensor diguanylate cyclase/phophodiesterase [Alteromonadales bacterium TW-7] gi|119445735|gb|EAW27018.1| PAS sensor diguanylate cyclase/phophodiesterase [Alteromonadales bacterium TW-7] Length = 739 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 133/625 (21%), Positives = 271/625 (43%), Gaps = 8/625 (1%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 R ++ + + + + + I + + +G L I+ + ++ Q Sbjct: 117 KDGRKRTVLGSAVPLKNGDASIILNIFYDITELEYENGQIGELSNIITELTLSLEQQKND 176 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 Q + ER SLA+ G+ D +WDWDI +++ +P ++LG + W Sbjct: 177 LILEKQKASVNTERLSLAMKGANDGLWDWDIANEKMYYSPRWKSMLGYKEDELTNSFATW 236 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 +H +D + SF+ + + EFR+R + + ++ R + + G+I R Sbjct: 237 ERLVHPDDLAPAVAKIHSFMESKTKHYEAEFRMRHKNGSYVNILSRAFVVESEEGEITRL 296 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 +G DIT +KKS E + + D+LTG+ NR+ F R+ +L ++A + + +D Sbjct: 297 VGTHVDITARKKSEEKLSYQSSHDSLTGLANRREFKRRVELLLSVAAE-KRVDHALCYMD 355 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K +ND G GD++L L + ++++ D++ARL G+ F +++ + + Sbjct: 356 LDQFKVVNDTCGHLAGDELLRQLGSLLQKVVRKTDVVARLGGDEFAVLMENCSFDNAHRV 415 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 ++ ++ R + S+G T + +E+LK A++A Y AK +G N + Sbjct: 416 TSLIQKEIEDYRFVWEGRSFRIGVSMGLIQITDKYVDFTEVLKLADVACYIAKEKGRNRI 475 Query: 693 ESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + A++ + + I L ++ E L++ + Sbjct: 476 HVHYDDDEELAVHQGEMQWVNRVQDAIDENRFKIYAQLIEPLACDKNKHYELLLRMVDDQ 535 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G I F+ AE +I ++ +M+E + I++ + F+ IN++ + L + Sbjct: 536 GGIIPPGAFLPPAERYQLIVKVDSWMIENAFKMILNNPNFLKGVN-FLSINLSGQSLTNE 594 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + ++ +I +E+ + N E + + +L+ +G LDDFG+ S Sbjct: 595 DFLIFVTEQLTLLGEHSEKICFEITETAAISNLELASKFISQLKVLGCCFALDDFGSGLS 654 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 YL + D +K +G + A+++SI + + IA+ + + Sbjct: 655 SFGYLKNLKVDYLKIDGIFVKDIEVDPIDHAMVKSINEIGHVMGMKTIAEFVETSRIKQT 714 Query: 927 LTRMGCDYIQDSHVASPLGFNSILK 951 L MG DY Q V P +LK Sbjct: 715 LLEMGVDYAQGYAVHKPQPIEELLK 739 >gi|167031260|ref|YP_001666491.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166857748|gb|ABY96155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 631 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 146/623 (23%), Positives = 279/623 (44%), Gaps = 15/623 (2%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A+ ++ + + + + + L L + + + VL ++ + +L Sbjct: 13 ALYVVLSILWLALAEVMLHGMTDDPLALTVGRQINIVLWVLFSAVLIYVSRVRLLNFIGA 72 Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451 + D ER +A + + V D V I G + G Sbjct: 73 GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVMGQRPSK 132 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + H ++ I + G E R + + I + + +G++ Sbjct: 133 FKSGRH--GLAFYQQIFATLAEQ--GEWSGEIWNRRKSGEIYPQWQTICAIRDDDGELSH 188 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ + +DI+ K + + + A D LTG+PNR F DR+ L + + ++++ Sbjct: 189 YVAVFSDISAIKHTEQELAYLAHHDPLTGLPNRLLFTDRVEQALAAAQANKRG-CALLLL 247 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D ++ IND LG +GD +L + R+GE+L LARL G+ F ++ + + Sbjct: 248 DLDHFQSINDGLGHTIGDQLLKRVGERLGEVLGSGVTLARLGGDEFAVLAENCQQVGQAG 307 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + + + P E + ++AS+G + + S + + ++L+NA+ A+Y AK G Sbjct: 308 KLAQCIIERMREPFLCEENRLFISASVGISLFPSDALGAEQLLRNADAALYKAKSNGRAC 367 Query: 692 VESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + ++ +L A+E EL + + P+ L VG+E L++W HP+ Sbjct: 368 YALYTEELTAHAQHRVETAGELRRALEQDELRVYFQPVHDLATGRQVGVETLVRWQHPQR 427 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + EF+ IAE +I I+ ++L + R ++ W+ + F+ +NI+S+ +E Sbjct: 428 GLVPPGEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAEGRQLA-FVAVNISSRLFGQHE 486 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + A++ +T P+ ++L +ES VM +PE + L RLR++G++L +DDFGT S Sbjct: 487 LYRQVAAVLHETGLPPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSS 546 Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L L +P +K + + G E IAI+R II +A+++ + A+ I L Sbjct: 547 LLRLKRLPVQKLKIDQGFVAGLPLDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFL 606 Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950 + C Q P+ + Sbjct: 607 LQEQCQLGQGYWFGRPVPAGDLR 629 >gi|119946743|ref|YP_944423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] gi|119865347|gb|ABM04824.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 777 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 145/559 (25%), Positives = 263/559 (47%), Gaps = 14/559 (2%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R + V + + ++ D + I G + + G D+ ++ Sbjct: 223 RVAATVFETQEGMFVTDANLCILRVNKAFTNISGYSGEEVIGQSPKLFNS-GRQDKAFYK 281 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + +S + E R+ + + I + + G + Y+ DIT K + Sbjct: 282 EMWNSI--NTTDAWRGEVSNRSKSGDIYAKNLTITAVRDGKGVVSNYVATFRDITTSKAA 339 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I A+ D LT +PNR+ LD L +L +SA + ++ +D+D +K +ND LG Sbjct: 340 SEKINNLAYFDPLTQLPNRRMLLDSLRHVLTISARSNQ-HCALLFLDLDNFKTLNDTLGH 398 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKS 640 VGD +L + R+ + ++ DI+ARL G+ F ++L + + K A + Sbjct: 399 DVGDLLLQQVATRLTDCVREGDIVARLGGDEFVVLLENLSLQAIEAANKAKKVAKKIIFE 458 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +A L T SIG ++ ++ E+LK A++AMY +K G N F + Sbjct: 459 LAQYYQLNMHRYHSTTSIGVTIFSGNETGIEELLKQADIAMYQSKAAGRNTWHFFNKTMQ 518 Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 S ++ DL A+E+++ L Y + + +G EALI+W HP+ G +S F+ Sbjct: 519 ESIIARADMERDLRKAIEDNQFQLHYQAQVS-SSGQTLGAEALIRWQHPERGQVSPFNFI 577 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I I ++L+ + +W+ + + +NI++K L + E ++A + Sbjct: 578 PLAEETGLILPIGQWVLDSACAQLKAWQKNPLTQDLVLAVNISAKQLHQEDFVEQVKATL 637 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + +P+R+KL +ES+++ N + L KIGIS +LDDFGT S L YL +P Sbjct: 638 KRHDINPARLKLELTESMLVENISDIITKMNILSKIGISFSLDDFGTGYSSLQYLKKLPL 697 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 + +K + S + AI+R+II M+ +++ ++IA+ + + + L GC + Q Sbjct: 698 NQIKIDQSFVRDLITDASDRAIVRTIITMSHSLDISVIAEGVETVEERQYLLDNGCTHYQ 757 Query: 937 DSHVASPLGFNSILKLLKE 955 + P+ N LLK+ Sbjct: 758 GYLFSKPVPINEFEVLLKK 776 Score = 41.5 bits (96), Expect = 0.65, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 16/175 (9%) Query: 387 IQHVLATGYFSQGIFSDG--ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 I+ + Q ++ R + + + +++ A++L + + Sbjct: 51 IELEMQNEELKQARIAEKLHYRYTELFEFAPIGYFSFNLKGVINQVNLRGASLLDIERAN 110 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G + + DR+ F L G +E + W+ I Sbjct: 111 LVGK--QFSNCLTAQDRNKFNRCLAKAFAGD-GIQSFEV-LAQVGKHKCWLNIEANLGIT 166 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCN-----AFQDNLTGIPNRQSFLDRLTTI 554 + DIT++K++ E +L D L I N++ F Sbjct: 167 E----TDCLAAVIDITDRKRADEELLFQNDEKGKRTDELV-IANKELFFQNAEKE 216 >gi|77458114|ref|YP_347619.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas fluorescens Pf0-1] gi|77382117|gb|ABA73630.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens Pf0-1] Length = 1092 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 148/587 (25%), Positives = 276/587 (47%), Gaps = 26/587 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 T ++ + + + E+ + A S D + + R + + G + Sbjct: 516 VTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAITITERDTGRYLEVNDGFCRLTGYRA 575 Query: 443 GSMHG----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G + W + R+ L + + + E R + + + Sbjct: 576 DEVVGKTVYQVGIWAE-------EKQRSALLAELQIKGRVHHQEMLGRNKRGEILTVEVS 628 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + P++ + + A D++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 629 VEPITL--NETACLLLTARDVSLLKNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 686 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F Sbjct: 687 KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFV 745 Query: 619 IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++L + ++ + A +R+ ++ P+ L + + VT SIG A T +++ Sbjct: 746 VLLSGLEGTRNEVSAQVRELADTIRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPTDL 805 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 LK A++A+Y AK G N + + + S+R+ ++ DL LA+ E + Y P I Sbjct: 806 LKRADIALYRAKDSGRNTTQMYHNTMQKAASERLRMETDLRLALSRGEFDVHYQPQIDAR 865 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 D I+G EAL++W+HP+ G S +EF+ + E+ +I + ++L+ + + Sbjct: 866 DNRIIGAEALVRWNHPELGAQSPTEFIKVLEDSGLILEVGTWILDEACEAFKQLIAEKLI 925 Query: 792 PPIFIL--INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P+ +NI+ + N+ E ++ +S S +KL +E +V+ N E + + Sbjct: 926 DPLAFSLCVNISPRQFRQNDFVERIEHSMSSHGLPCSLLKLEITEGIVIQNLEDTISKMR 985 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907 RL+K+G+S +DDFGT S L+YL +P DT+K + S + + I+R+I+ MA+ Sbjct: 986 RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFIRDATTDPNDAEIIRAIVAMAR 1045 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 ++E +IA+ + + L +GC Q + PL + LL+ Sbjct: 1046 SLELEVIAEGVETPEQLAFLQGLGCHLYQGYLHSRPLPLEGLKGLLE 1092 Score = 103 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 63/181 (34%), Gaps = 3/181 (1%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + A ++ + I+ V +L F A + ER Sbjct: 229 LVSMEVQFRASNGQIHDGILSAQKVELEGQPYLLSTFLDTTERKA---AEHALKDSQERL 285 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 LA+ + WDW I + + A + GL H + + +RD+ R Sbjct: 286 DLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLEPKPFHESFEEFFEGVPGEERDSMRDA 345 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S G Q +RV+ D ++ R R + NG LR G DIT+Q + + Sbjct: 346 YRSLREGPAGNYQLTYRVQLPDGSSRYLESRARLYRDDNGVPLRMAGTLLDITDQVEREQ 405 Query: 528 G 528 Sbjct: 406 R 406 Score = 98.1 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 1/133 (0%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 S+ + + A+ G+ W WDI R +++ + + G +L Sbjct: 20 RRSEQSWESAPQLLAALNGARLGAWYWDIERGQISWSRGTQALFGFDPRQPLPEDLEYLD 79 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + DR + + R+R D HW+ I + + +G R IG Sbjct: 80 LLPPEDRAKTIRAFHAVIAGAPLEQAMHHRIRWPDGSLHWLEINGSLLPDKHGRP-RMIG 138 Query: 515 IANDITEQKKSLE 527 + +IT Q++ + Sbjct: 139 VIREITHQRQREQ 151 Score = 46.9 bits (110), Expect = 0.015, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 15/166 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + Q + + E+ + S D + + + G ++ Sbjct: 391 AGTLLDITDQVEREQRLVASEEKFATLFQVSPDPICVTRQETGEFIEINSSFSQTFGWSA 450 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + + ++ + + G V+ D Q +I R + Sbjct: 451 SDVIGHTAEEIGLW--DASAKSLQRIERVIREQ-GLSNVAIIVQHKDGQSLTCVISSRQI 507 Query: 503 SNSNGDILRYIGIANDITEQKK------SLEGILCNAFQ---DNLT 539 S G+ + DIT+Q++ + E AF D +T Sbjct: 508 --SVGNQPCIVTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAIT 551 >gi|289676144|ref|ZP_06497034.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 828 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 155/561 (27%), Positives = 262/561 (46%), Gaps = 14/561 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 E+ LA + + V + + I G + G R Sbjct: 254 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGQTPRLLAS 313 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D + + G Q E R + + + + I + N + + ++ Sbjct: 314 GQH--DSAFYAAMWHQLTAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDDLLTHFVA 369 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI+ K + + A D LTG+PNR F RL L S +L V+ +D+D Sbjct: 370 VFADISSLKHAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 428 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG VGD +L + R+ E L+ D +ARL G+ F ++L + A Sbjct: 429 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIA 488 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + P E E+ ++ SIG + + + ++KNA+ AMY +K +G N VES Sbjct: 489 NKLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 548 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + S+R+ ++++L A+E ++L L Y P I L + G EALI+W+HP +G + Sbjct: 549 YTCDLSEQASERIALEQELRRALERNQLTLAYQPKINLTTHTLAGAEALIRWNHPTFGEV 608 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AEE MI I ++LE+ R + WR P + +N+A L L E Sbjct: 609 PPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRK-TCQPFGPLSVNLAGAQLRQTNLLE 667 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ L++ P ++L +E+ +M + + +L +L+ +G+ L +DDFGT S LSY Sbjct: 668 RIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSY 727 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P D +K + S + G E AI+R+II + ++++ T+IA+ + + LT Sbjct: 728 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSE 787 Query: 931 GCDYIQDSHVASPLGFNSILK 951 GC+ IQ V+ PL Sbjct: 788 GCEQIQGYIVSLPLDAEEFRA 808 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 47/155 (30%), Gaps = 12/155 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 +++ + Q + E+ + A S D + + G + Sbjct: 121 LVIVRDITQLKLARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRQTGYSE 180 Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + ++ +++R + + R+R + + +P Sbjct: 181 KYCLDHSTFDLGIWVDLSERSRLIERMKKHGFVK----DMRVRIRHNNGDIRLCELSSQP 236 Query: 502 --MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++ + + I DITE ++ E + A Sbjct: 237 LIIAGED----CLLTITRDITESRQMQEKLHLAAT 267 Score = 39.5 bits (91), Expect = 2.5, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 34/147 (23%), Gaps = 15/147 (10%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + D + + + GL + G L Sbjct: 10 REASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANEAFVERTGLPLDEVIGKTPTELNL 69 Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 L E R + + ++ +P + I + Sbjct: 70 WAVPGIGPKVLLQL-----QTDDIHNLEIPFRRKNGETFSGLMSAQPF--EHSPIPAVLV 122 Query: 515 IANDITEQK------KSLEGILCNAFQ 535 I DIT+ K + E AF Sbjct: 123 IVRDITQLKLARQQLQLSEEKFAKAFH 149 >gi|291613133|ref|YP_003523290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291583245|gb|ADE10903.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 1044 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 140/589 (23%), Positives = 259/589 (43%), Gaps = 20/589 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATI 437 + ++ + E LA S D + D + P I Sbjct: 460 IRSHGEMEGAVVVFEDISERRQKDEALKLASSVYQSSNDGILVTDEKNRILDVNPAFTRI 519 Query: 438 LGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G + G + H D ++ + S + G Q E + + H Sbjct: 520 TGYTLEDVRGKDPGIFQSGKH--DAQFYQQMWQSILD--DGHWQGEIWDLKKNGELHAKW 575 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + I + ++G I R++G +DITE+K+ E I A D LT +PNR+ F DR + Sbjct: 576 LSISVIRRADGSIYRHVGQFSDITEKKRKDELIWEQANFDTLTNLPNRRLFADRFRQAIS 635 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 A ++ +D+D++K++ND G ++GD +L+ + RR+ ++ D +AR+ G+ Sbjct: 636 AGARSGRY-GALLSLDLDQFKRLNDTFGHSMGDKLLIEVARRLTSCVREEDTVARMGGDE 694 Query: 617 FGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 F +IL + + A +R + P L + E ++SIG + Sbjct: 695 FLVILNGLGSEQNEAAIRAELIAEKIRNELCRPYQLDKTEHHSSSSIGIVLFRGHSDDPE 754 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIR 729 +L + + AMY +K +G N + F S ++ L A+E E L Y + Sbjct: 755 RLLAHVDTAMYQSKAKGRNAICFFDSSMQEILEKRGQLETALRGALERKEFLLHYQLQMD 814 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 +G EAL++W++ K G++S +F+ +AEE +I I ++LE + W+ Sbjct: 815 -SSGRPIGAEALLRWNNAKLGSVSPVQFIPVAEESGLILPIGHWVLETACAQLARWQSDP 873 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 + I +N+++ + ++ ++ ++ P +KL +ES+V+ + S L + Sbjct: 874 RFNRLCIAVNVSAIQFREAAFVAKVRNVLQQSGIQPWLLKLELTESLVLDDINDSILKME 933 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TEKRIAILRSIIPMA 906 L+ +G+ ++DDFGT S LSYL +P D +K + S + + AI+++II MA Sbjct: 934 ALKNLGVKFSMDDFGTGYSSLSYLSRLPLDQLKIDQSFVRDITTTDQHDAAIVQTIISMA 993 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ +IA+ + E + L GC Q A P+ + L + Sbjct: 994 LSLGMEVIAEGVETEEQREFLDLRGCQAYQGYLYAKPMPIEELEIKLAQ 1042 Score = 82.3 bits (202), Expect = 4e-13, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 63/169 (37%), Gaps = 11/169 (6%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 ++ + L+G + L+ ++ + + + + + +R L + + +W D Sbjct: 322 SNFLLLWLLGSVTLLTVVSLTFYFRSIRQSRS---AVAASEQRLRLILGSVSNGIWGLDK 378 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH---IN--DRDNFRTILDSFVGYRRGR 478 + A +LG + + IH + R + + + + R Sbjct: 379 DGNTTFVNAAAADMLGYTPEELFDKPMH--ATIHHSYPDGTHYPAERCPMHATLVDGKPR 436 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + + D ++ P+ S+G++ + + DI+E+++ E Sbjct: 437 MGIDEVLWRKDGSELYVDYSSHPIR-SHGEMEGAVVVFEDISERRQKDE 484 >gi|77456420|ref|YP_345925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas fluorescens Pf0-1] gi|77380423|gb|ABA71936.1| putative sensory box GGDEF/EAL domains protein [Pseudomonas fluorescens Pf0-1] Length = 643 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 153/624 (24%), Positives = 274/624 (43%), Gaps = 21/624 (3%) Query: 341 IPAWILIFIWFIGLWMAITKRLDND----IIQPALVGGLVLIVILIGFTVIQHVLA---T 393 + +L +W G + D+ Q V + + F + Sbjct: 17 LLYLVLAVVWLQGTGYLLNSFFDSSDELLRWQLINGYLFVALSAGLIFLARARLFECLGI 76 Query: 394 GYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-I 449 G + +D ER A + + V D V I G + G Sbjct: 77 GARLRERQADRERLRQAAAVFDCTREGVLVTDRQGLIVHVNRAFMEITGYQRDEVIGQQP 136 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + H F + + + R E R + + IR + + + + Sbjct: 137 SLFKSGHHP---PGFYQAMFASLQAR-DEWSGEIWNRRKSGEIYPQWQTIRVIRDDDNRL 192 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 Y+ + +DI+ K S + A D LT +PNR F DR L + T ++ Sbjct: 193 SHYVAVFSDISAIKDSEHELKHLAHHDPLTDLPNRLLFSDRAEQALASAQTHKRG-CALL 251 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +ID+D +K IND LG +GD +L ++ R+ L LARL G+ F ++L S + Sbjct: 252 MIDLDHFKLINDSLGHTIGDRLLKAVAARLQALFGPGITLARLGGDEFAVLLESCPQPAQ 311 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A A + ++ P L E+ + AS+G + + S +++ ++L+NA+ A++ AK G Sbjct: 312 AAALAQRILDALKEPFCLDGHELFINASLGISLFPSDALSAEQLLRNADAALFKAKSSGR 371 Query: 690 NHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + + ++ +L A+E EL + Y P+ L ++G+EAL++W+HP Sbjct: 372 NGYALYTEELTAHAQQRVEIAFELRRALEQQELRVYYQPVHDLQTSRLIGVEALVRWEHP 431 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G +S +EF+ IAE +I I+ +++++ R + W+ + F+ +N++S+ Sbjct: 432 QRGLVSPAEFIPIAERTGLISEIDAWVMQQACRQMCQWQQAGVVLS-FVAVNVSSRLFAR 490 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 EL + + ++ +T P+ ++L +ES VM +PE + + RLR++GI L +DDFGT Sbjct: 491 RELYQQVAQVLHETGLDPAYLELEVTESAVMDDPEVALEQMHRLRELGIRLAIDDFGTGY 550 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L L +P +K + + G E AI+R II +A+++ + A+ I Sbjct: 551 SSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVIIALARSMGMQVHAEGIEQVEQAA 610 Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949 L CD Q P+ I Sbjct: 611 FLLGQACDLGQGYWFGRPVPEAQI 634 >gi|302879176|ref|YP_003847740.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581965|gb|ADL55976.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 1134 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 149/563 (26%), Positives = 262/563 (46%), Gaps = 16/563 (2%) Query: 404 GERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 E+ +A + + + D + I G + + G L N++ Sbjct: 572 EEQLRVAAAAFETHEAIMITDAHGTIIKVNQAFQRITGYSQEEVLGENPRILSA-GRNEK 630 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + GR + E + Q + + I + + NG Y+ I +DIT+ Sbjct: 631 SFYSAMWQQL--TTLGRWRGEIWDKRKSGQIYPKWMTITAVRDENGKTTEYVAIFSDITQ 688 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K + E I AF D LT +PNR+ LDRL L +SA V+ +D+D++K +ND Sbjct: 689 RKLAEEEIRNLAFYDALTRLPNRRLLLDRLHAALSVSARSRRF-GAVLFLDMDRFKTLND 747 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIA 636 +G GD +L+ + RI ++ D +ARL G+ F I++ + + IA A Sbjct: 748 TMGHDYGDLLLIEVAERIKLCVREIDTVARLGGDEFVILVEEIDTRAEETSKHIAAIAEK 807 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 +R ++++P L E+ + SIG + + ++ ++LK+A++AMY AK G N V F Sbjct: 808 IRSALSVPYRLKEKHHHSSPSIGVCLYRGIEESTDDLLKHADMAMYQAKDSGRNAVRFFD 867 Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ ++ DL A+ N +L L Y + D +G EAL++W HP G +S Sbjct: 868 PLMQQAVEARVTLENDLRHALPNDQLQLYYQIQVD-NDRRAIGAEALVRWIHPIRGMVSP 926 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 + F+ IAEE +I + ++L+ + W D+ + + +N++ + E + Sbjct: 927 AHFIPIAEETSLILEVGAWVLKTACLQLAVWADRPMTCNLILAVNVSVQQFKQVGFVEHI 986 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 LI P R+KL +ESVV+ + + L+ +G+ L++DDFGT S LSYL Sbjct: 987 AELIRAYCIVPQRLKLELTESVVLNDVSDIVQKMCALKSLGVRLSMDDFGTGYSSLSYLK 1046 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + E ++++II MA+N +IA+ + E + L + GC Sbjct: 1047 NLPLDQLKIDQSFVRNIATDENDAVMVKTIIAMAQNFRLNVIAEGVETEAQLAFLKQNGC 1106 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 Q + P L+ Sbjct: 1107 MCYQGYYFGKPAPIEQFQSQLEA 1129 Score = 91.9 bits (227), Expect = 5e-16, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 3/146 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + +R SG+ +W+ DI + + G + G Sbjct: 437 RDITERKKSEAALRYSEQRLRDVSEASGEYLWEIDINLGYTYVSNRSIEVKGYTPEQLLG 496 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 ++ D D I++ + + + + R W + P + G Sbjct: 497 HAPA--EFMPPEDIDMAARIVNLAIS-KNQPFKLQHRDITPSGAILWEEVSGVPFYDDAG 553 Query: 508 DILRYIGIANDITEQKKSLEGILCNA 533 +L G +IT +K E + A Sbjct: 554 HLLGLRGTGRNITGRKLKEEQLRVAA 579 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 4/127 (3%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 +D R D+VW + P + +LG A ++ G +I Sbjct: 71 TDEARLRTLFNTIKDLVWLKAPDGVYLACNPVVERMLGTAEAAIVGRTDY--DFISREQA 128 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 D+FR + + + E + D P+ + G ++ GIA DIT Sbjct: 129 DSFREHDRAAMNTGTVCIN-EGWLTFKDTGYCGLFETSKTPVYDDTGQLIGVFGIARDIT 187 Query: 521 EQKKSLE 527 E+K++ Sbjct: 188 ERKRAEA 194 Score = 56.1 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 11/138 (7%) Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 ER L A + D + + G + + + L + Sbjct: 327 EERLELTQFASDYAPDCILWVNEQARICYANEAALHCHGFSKEELLSMTIHDLD---PDF 383 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + ++ G + E R R D + + + + + I DIT Sbjct: 384 PPDVWLAHWHELQHKGG-ITIETRHRRRDGSIFPIEVSANFVKFGDKE--YNIAYHRDIT 440 Query: 521 EQKK--SLEGILCNAFQD 536 E+KK + +D Sbjct: 441 ERKKSEAALRYSEQRLRD 458 Score = 55.3 bits (132), Expect = 5e-05, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 62/206 (30%), Gaps = 9/206 (4%) Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389 + ++RA + + W + G ++ F + + Sbjct: 130 SFREHDRAAMNTGTVCINEGWLTFKDTGYCGLFETSKTPVYDDTGQ----LIGVFGIARD 185 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-- 447 + + + ++ + V + + +LGL+ + G Sbjct: 186 ITERKRAEAALKNSEQQARNLIDKLQVGVLLQSARAEILLCNQIALDLLGLSEAQLLGKS 245 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV---RAADNQFHWMIIRIRPMSN 504 IH + + V L ++ + R + W+++ P N Sbjct: 246 SFDPDWNVIHEDGSPFPGSEHPVPVSIATKSLVHDVVMGVYRPSKRDRVWLLVSAAPQLN 305 Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530 N ++ + + DITE+KK E + Sbjct: 306 PNNEVEQVVCTFVDITERKKMEERLE 331 >gi|89902139|ref|YP_524610.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89346876|gb|ABD71079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 860 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 146/622 (23%), Positives = 281/622 (45%), Gaps = 14/622 (2%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + W +A + ++ L+ L ++ I + Sbjct: 247 WSLSVAPRLGWGDRAGLAGKTFIG--LLFSWLLAYLAKLLTRQRAYKINLEQQVTERTAE 304 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPIRNWLPYIHI 458 I + + S + D++++ D+ + +P A +L ++ G + + Sbjct: 305 IQASERQLSATLDAIPDLLFEMDLNGRYLLCHSPRAADLLDAPVQALLGKTVS--EVLPP 362 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + L +F + + + Q W + + + S G R+I I+ + Sbjct: 363 AAAEVVLQALKQA-HELGLAHGQQFELASPE-QDRWFELSVARKAVSAGQEPRFIVISRE 420 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE+K++ + I A+ D LT +PNR DR+ L + +M +D+D +K Sbjct: 421 ITERKQAEKDIQKLAYFDALTSLPNRSLLNDRIRHALSEADRRQE-SLALMFLDLDHFKN 479 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +LV+L R+ +++ D +ARL G+ F ++L + A + Sbjct: 480 INDTLGHGVGDQLLVALAARMQSVVREQDTVARLGGDEFILLLPDTGSKGAA-RVAQKLL 538 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++I++P+ + E+TVT S+G A + + + A++AMY AK G N + + Sbjct: 539 QTISLPVQIGPHELTVTPSMGIAQYPRDGDDLETLSRRADIAMYRAKQSGRNGYQFYTTE 598 Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + I+ L A+E +L L Y P + L IVG+EAL++W HP+ G ++ +E Sbjct: 599 MQLTTDRALQIENALRRALERDQLRLHYQPQLSLSTNRIVGVEALLRWQHPELGQVAPAE 658 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAE I+ I ++L A+ WRD + P+ + +N+++ +L E + Sbjct: 659 FIAIAEASGQIQGIGEWVLRTAAQQAKQWRD-LGLAPMTMSVNLSAVQFRHPDLPELVAR 717 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++ P ++L +E V + +P + ++ + + G+ +++DDFGT S LSYL Sbjct: 718 ILAEAQLPPQFLELELTEGVALHDPLGAIAVMEHMHQQGVKISIDDFGTGYSSLSYLKRF 777 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 +K + S + + +AI+ +II MA ++ IA+ + + + L GCD Sbjct: 778 HAHQLKIDQSFVRDITDDPEDLAIVNAIISMAHSLGMNTIAEGVETQAQLTLLRAQGCDE 837 Query: 935 IQDSHVASPLGFNSILKLLKER 956 +Q P ++ L+ Sbjct: 838 VQGYFFCRPQPPEELVAFLRAH 859 >gi|319760758|ref|YP_004124695.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|330822678|ref|YP_004385981.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|317115319|gb|ADU97807.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|329308050|gb|AEB82465.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Alicycliphilus denitrificans K601] Length = 1206 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 142/610 (23%), Positives = 267/610 (43%), Gaps = 20/610 (3%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 + +P V + I L I Q+ + + D Sbjct: 601 TPMGMVMVMFREPLAQVEFVCSALQIFAARASAELQRQMDDARIRH----QASLLDRARD 656 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 + D+ + G + G R+ +H +D ++F + + Sbjct: 657 AIIVRDLEHRITFWNEGAERMYGWSREEALG--RSMASLLH-HDPEDFLHATAQVLQH-- 711 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 G E R+ + + + R + N G+ + I +DI +K I AF D Sbjct: 712 GDWSGEIVQRSRNGRSIEVEGRWTLVRNDQGEPESILAIDSDIGPRKSHEREIQRLAFFD 771 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LTG+PNR F+ R+ L + ++ ID+D +K +ND LG GD +L + Sbjct: 772 PLTGLPNRAQFMQRMGHALATARRQHQG-GALLFIDLDNFKTLNDTLGHDQGDRLLQLVA 830 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLERE 651 +R+ ++ D +ARL G+ F ++L + + + +P L + Sbjct: 831 QRLSTCVRSVDTVARLGGDEFVVLLEQLTAHAATLAEHANKVGEKILNVLCVPYALAGHQ 890 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 T SIG A + + + ++LK A+LAMY AK+ G + + F R +R ++ Sbjct: 891 YRSTPSIGIALFDDTPTSMGDLLKQADLAMYQAKNAGRSTLRFFDPGMQRAVDERATLEA 950 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 DL A+ E L Y P + I+G+EAL++W HP+ G +S ++F+ +AEE +I Sbjct: 951 DLRNALSQQEFTLHYQPQVDSRGG-ILGVEALLRWTHPQRGMVSPAQFIPVAEETGLILP 1009 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 + ++L + + +W+ + + + +N++S+ D + +++ T +++K Sbjct: 1010 LGRWVLHKACTLLAAWQKFPGLAHLTMAVNVSSRQFRDPGFVGDVARVLAVTGAPSAQLK 1069 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES+++ + + + LR G+ +LDDFGT S L+YL +P + +K + S + Sbjct: 1070 LELTESLLVEDMVSTIATMEALRAHGVGFSLDDFGTGYSSLAYLKRMPLEQLKIDRSFVR 1129 Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 E AI+R+I+ +A ++ ++IA+ + + LTR GC Q PL + Sbjct: 1130 DLLADENNAAIVRTIVALAASLGLSVIAEGVETDEQRNWLTRAGCTVYQGYFFNRPLSSD 1189 Query: 948 SILKLLKERF 957 + LL+ Sbjct: 1190 RLDGLLRSYL 1199 >gi|149920383|ref|ZP_01908853.1| hypothetical protein PPSIR1_08781 [Plesiocystis pacifica SIR-1] gi|149818825|gb|EDM78267.1| hypothetical protein PPSIR1_08781 [Plesiocystis pacifica SIR-1] Length = 696 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 149/600 (24%), Positives = 285/600 (47%), Gaps = 12/600 (2%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 ND+I A +G L ++ + + L + + D W+WD Sbjct: 100 ANDLITTAELGTAAL------SRAVRQTVEQSRTLAALTEARANHDLLLDATYDGTWEWD 153 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + D+V +P AT+ G+ + +W +H +D R L + + R QYE Sbjct: 154 VRGDQVHYSPRCATLFGIRNVEGEHGGESWFGRVHPDDLPGLRDNLTALIEGRVTVHQYE 213 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 R+ D + ++ R ++ G+ + G DI +K + + + + D LTG+P Sbjct: 214 HRIARGDGSYMRVLSRGLARRDARGEAISLAGSFTDINRRKPAEDQSVPSTRNDELTGLP 273 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 +R+ L + + D + +V+ +++D++K +ND +G+ D VL L RR+ Sbjct: 274 SRRVLHSELEQAIKRTHADAEHKFSVLFLNLDRFKVLNDSIGLDSADQVLTQLARRLQAT 333 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFA 661 + ++ R G+ F I+L + + A A+ + + P + + I TASIG A Sbjct: 334 VSGKALVCRYGGDEFAILLDALEQFDEADTLAEAIHEDLRRQPFEIDGQTIFTTASIGIA 393 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSE 719 + + +E++++A +A AK G + +F + + + + L A+ + Sbjct: 394 NSDRNYERPAEVIRDAGVATSRAKRHGKSQSSTFDKTMRQEALNTLRTQMQLREAIVRQQ 453 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 + Y PI+ L ++ G EAL++W+HPK G I EF+ +AEE +I I F+L++ Sbjct: 454 FEVYYQPIVSLASSKLTGFEALVRWNHPKRGIIGPIEFIALAEETGLIVPIGQFVLKQAC 513 Query: 780 RDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 + +W + + + I +N++ L L ++A++++T PS +KL +ES ++ Sbjct: 514 TQMAAWHAKYDEAKDVSISVNLSGHQLNSPTLVAEIEAVLAETALPPSAVKLELTESTLI 573 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRI 896 +P ++ +L RLR GI L +DDFGT S LSYL D +K + S + G +++ Sbjct: 574 DDPTSAQRILKRLRDRGIQLYIDDFGTGYSSLSYLHRFAIDGLKIDKSFVDMVGRDDRKA 633 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 AI+ SI+ +A N+ ++A+ + + L + C Q + P+ + KL++ + Sbjct: 634 AIVPSIVGLAHNLGVGVVAEGVETRDQAQTLALLDCAEAQGYLYSRPVPQDQAAKLIERK 693 >gi|302185958|ref|ZP_07262631.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 828 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 156/560 (27%), Positives = 269/560 (48%), Gaps = 13/560 (2%) Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ LA + + V D + I G + G + L Sbjct: 257 QMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEITGYSEDEAIGQTPSLLAS-GQ 315 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D + ++ G Q E R + + + + I + N + + ++ + D Sbjct: 316 HDSAFYASMWHQLAAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDNFLTHFVAVFAD 373 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ K + + A D LTG+PNR F +RL L S +L V+ +D+D++K Sbjct: 374 ISSLKHAQARLDYQAHHDPLTGLPNRILFENRLQAALLHSEESGSL-GAVLFLDLDRFKH 432 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L + R+ E L+ D +ARL G+ F ++L + A + Sbjct: 433 INDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIANKLL 492 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P E E+ ++ SIG + + + ++KNA+ AMY +K +G N VE + Sbjct: 493 ACFNTPFQAGEHELYISPSIGSCVFPTDGNDVATLVKNADAAMYRSKAKGRNRVERYTCD 552 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + S+R+ ++++L A+E ++L LVY P I LM + + G E LI+W HP +G++ Sbjct: 553 LTAQASERIALEQELRRALERNQLTLVYQPKIDLMTQTLAGAETLIRWSHPTFGDVPPEH 612 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE MI I ++LE+ R + WR P + +N+A L L E ++ Sbjct: 613 FIPLAEENGMILQIGDWVLEKACRQMGVWRK-TCKPFGPLSVNLAGAQLRQTNLLERIEQ 671 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L++ P ++L +E+ +M + + +L +L+ +G+ L +DDFGT S LSYL + Sbjct: 672 LLNDNGLEPGCLQLEITENFIMSQTQEALAVLHKLKHLGVQLAIDDFGTGYSSLSYLKRL 731 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + G E AI+R+II + ++++ T+IA+ + + LT GC+ Sbjct: 732 PLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSEGCEQ 791 Query: 935 IQDSHVASPLGFNSI-LKLL 953 IQ V+ PL + L Sbjct: 792 IQGYIVSLPLDAEEFCARFL 811 Score = 48.8 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 8/153 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 +++ + Q + E+ + A S D + + I G + Sbjct: 121 LVIVRDITQLKQARQQLQLSEEKFAKAFHASLDGLAITRQQDGMLLEVNEGFCRITGYSE 180 Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + ++ +++R + R R+R A+ + +P Sbjct: 181 KYCLDHSTFDLGIWVDLSERSRLVERMKKHGFVR----DLRVRLRNANGDIRLCELSSQP 236 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + D L + IA D+TE + E + A Sbjct: 237 LIIAGDDCL--LTIARDVTEGSQMQEKLHLAAT 267 Score = 44.6 bits (104), Expect = 0.082, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 15/153 (9%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY- 455 + + + D + + + GL + G L Sbjct: 11 EASCLSEGKFASVFAQCPDAMIIASLADGHIMDVNDAFVERTGLTLDEVVGKTPTELNLW 70 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 L E R + + ++ +P I + I Sbjct: 71 AVPGIGPKVLQQL-----QTGDIHNLEIPFRRKNGETFSGLMSAQPF--EQSSIPAVLVI 123 Query: 516 ANDITEQKKSLEGIL------CNAFQDNLTGIP 542 DIT+ K++ + + AF +L G+ Sbjct: 124 VRDITQLKQARQQLQLSEEKFAKAFHASLDGLA 156 >gi|114564545|ref|YP_752059.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114335838|gb|ABI73220.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 829 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 133/580 (22%), Positives = 255/580 (43%), Gaps = 13/580 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + V + Q ++S+ ER + + GD V D P + G Sbjct: 242 LVTVVDVSEVKHAKQALYSEKERLRVTLNSIGDAVIATDTRGLITFMNPIAERMTGWRLK 301 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILD----SFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 +H+ D D + +L+ + R + + + ++ Sbjct: 302 DALHQKIE--DVMHLKDSDTQQPLLNPLYLALREQRIVAMALNSLLTSRGGHVFYVEDSA 359 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 P+ N NG+++ I + +D++E + A D LT +PNR DRL+ + Sbjct: 360 APIRNENGEMIGAIMVFHDVSEAMAMAMKMSHLANHDQLTDLPNRILLQDRLSVACSTAR 419 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + ++ IDID +K +ND LG GD+++ + RR+ L+ LARL G+ F I Sbjct: 420 SYGTKAAALL-IDIDHFKFLNDSLGHQYGDELICMMARRLRSLIPASYTLARLGGDEFVI 478 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 ++ + + A + +++ P L ++ V+ SIG + + + + + E++++A++ Sbjct: 479 LMSETRSVEASSQLASTLVEAMHEPFVLDNQKFNVSISIGVSVFPNDAVDAEELMRHADV 538 Query: 680 AMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G N F +R ++ L A+ N EL++ Y P I L I+G Sbjct: 539 AMYRAKQEGRNRFCFFSHDLESSLMERHHLETRLRKALINDELFVHYQPKIDLQTNIIIG 598 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++ + + IS +EF+ +AEE +I + +L + + W + + I I Sbjct: 599 AEALVRLANDEGELISPAEFIPLAEESGLIIMLGKQVLNKACAEAKRWLEMGHT--IPIS 656 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N+A+ D +L ++ + ++L +E+ +M + + L L +GI Sbjct: 657 VNVAAAQFADPDLAGMIKKALLDHNLPAHLLELEITETALMIDAADMQNKLSELISLGIK 716 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT S L+YL D +K + S + + I+++II + K++ +IA Sbjct: 717 IAIDDFGTGYSSLAYLKKFNVDVMKIDMSFVKDMLNNKHDYEIVKTIISLGKSMGLVLIA 776 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + L +GC Q + PL + + Sbjct: 777 EGVETKEQSHALVELGCFMGQGYLFSRPLNSTDFEAFISQ 816 >gi|170724692|ref|YP_001758718.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908] gi|169810039|gb|ACA84623.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella woodyi ATCC 51908] Length = 1481 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 142/566 (25%), Positives = 260/566 (45%), Gaps = 12/566 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + D + + A + + V D + ILGL + H + L Sbjct: 923 QRQLEDDVKLLAQAFENTSEGVLILDAKERIKVSNKAAQIILGLDVEAFHSKTFSSLMVA 982 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D +L R E A+ + + I M GDI+ Y+ + Sbjct: 983 KEGRLDEVAKLL-----GRGDSWTGEREFICANGNNCPVWLNISTMLGGKGDIVHYVAVF 1037 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K+S + A D LTG+PNR F RL + + + ++ +D+D++ Sbjct: 1038 SDITERKRSEAELRRLANYDVLTGLPNRSLFSTRLAQSIHRA-EHSGEKLALIFLDLDRF 1096 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV R+ + L R G+ F I+L ++ I Sbjct: 1097 KHVNDSFGHSMGDALLVEAASRLQSCIHDGHTLCRFGGDEFVILLRDVSDIDMINHICTE 1156 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + K I P L RE ++ SIG + W + ++KNA+ AMYHAK G + + + Sbjct: 1157 LLKQIETPFELYGREFFISTSIGVSLWPDDATQAENLIKNADQAMYHAKEEGKGNFQYYS 1216 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753 +S + ++ +L A+E E L Y P + + D++++G+EAL++W H + G I Sbjct: 1217 SERNSEALYHLHLEAELRRAIERDEFELHYQPQVDILKDDKLIGMEALLRWRHHQDGLIR 1276 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 + F+ +AE +I I+ ++L + W + +NI++ + EG Sbjct: 1277 TDIFIKVAESCGLIIDIDRWVLRQACIQGAQWASVYG-ESFKLSVNISAVHFRQPDFIEG 1335 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++A+I +T + +E V+M ++ L L+ +GI + +DDFGT S L+YL Sbjct: 1336 VKAIIHETQIPAKILNFEITEGVLMKELNIAKAHLKELKCLGIDVAIDDFGTGYSSLAYL 1395 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + T+K + S + E AI SII +A+N++ +++A+ + + ++++ G Sbjct: 1396 RHFDVTTLKIDRSFLIDIATNEADQAIASSIIELARNLKLSVVAEGVETKAQLEQVFSRG 1455 Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957 C IQ + + PL + + +K + Sbjct: 1456 CYIIQGYYFSKPLTQPEMERYMKSQN 1481 Score = 91.9 bits (227), Expect = 5e-16, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 63/151 (41%), Gaps = 6/151 (3%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + A ++ + +R ++ GS +W+W A + G S + Sbjct: 788 GRQRQISAFRVVNEALVESEDRLRQSLKGSDSELWEWRYDTQMFNLENQGAALTG--SKN 845 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-S 503 + + ++ +H +++ +S + R + E+R R D + W +R RP+ Sbjct: 846 ILLTLDDFP--VHRDEKKGVLESWESMLNGDSDRFEVEYRYRREDKSWGWTRVRGRPVDF 903 Query: 504 NSN-GDILRYIGIANDITEQKKSLEGILCNA 533 + G I R GI +DIT Q++ + + A Sbjct: 904 DPETGRITRVAGIYSDITTQRQLEDDVKLLA 934 >gi|297538683|ref|YP_003674452.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297258030|gb|ADI29875.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Methylotenera sp. 301] Length = 1591 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 142/611 (23%), Positives = 276/611 (45%), Gaps = 15/611 (2%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQ 407 + + + R + + + + ++ I+ + ++ ++ E R Sbjct: 980 LATLIGSIQFESRTNPSLGAVRTLSNSIKVIRDASGRAIRATGTSLDITERKLAELEFRI 1039 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + S + + D+ + + I G + G + H ++F Sbjct: 1040 AATAFESQEGMMVTDVNKIILRVNKAFTKISGYTAEEAVGQTPRLVSSGH--HHEDFYAS 1097 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + G + E R + + + + I + NG + Y+ D+T + + Sbjct: 1098 MWQNIDA-SGYWEGEVWNRRKNGEVYPQHLTITAVMGDNGIVTNYVATFTDVTLRNAAEA 1156 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I AF D LT +PNR+ +DRL L + ++ +D+D +K +ND LG V Sbjct: 1157 EINHLAFYDVLTRLPNRRLLIDRLNHALS-AGARLGWGGALLFLDLDHFKTLNDTLGHDV 1215 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIA 642 GD +L + R+ + ++ D +ARL G+ F ++L + + + A + SI+ Sbjct: 1216 GDLLLRQVADRLTDCVREGDTVARLGGDEFVVMLEDLSKHPLEAAGQAETIANKILISIS 1275 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P L TASIG ++ ++ + +LK+A++AMY AK G N + F + + Sbjct: 1276 QPYQLGASAYQTTASIGVVLFSENEHSQDVLLKHADIAMYQAKKMGRNTLCFFDPNMQEA 1335 Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + ++ DL A++N++ L Y + + +G EALI+W HP+ G +S EF+ + Sbjct: 1336 INMRAALEVDLRKALDNNQFELYYQVQVD-RLGKALGAEALIRWIHPERGLVSPLEFIPL 1394 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I I ++LE + +W+ + + + IN+++K N + +QA + Sbjct: 1395 AEETGLILPIGQWVLETACAQLKAWQTKRQTQALTLSINVSAKQFYQNTFAKQVQAAVKH 1454 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + +P R+KL +ES+++ N E + + L+ IG++ +LDDFGT S L YL +P Sbjct: 1455 SGINPIRLKLELTESIMLENIEATITKMMELKNIGVNFSLDDFGTGYSSLQYLKLLPLYQ 1514 Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + AI+R++I MA+ + +IA+ + + + L GC+ Q Sbjct: 1515 LKIDRSFVREIAIDTSDQAIVRTVIAMAETLNLDVIAEGVETDEQRELLMNCGCNAYQGF 1574 Query: 939 HVASPLGFNSI 949 P+ Sbjct: 1575 LFGRPMPIAQF 1585 Score = 84.2 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 1/147 (0%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + V + + A + W+ D+ + + + + L Sbjct: 897 RDVTERKQSELKLLESSASLAKAQASAHLGSWELDLTTMVGSWSDENFRLYDLDPELGTP 956 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +L IH +DRD + + G +Q+E R + + I+ + +++G Sbjct: 957 SFAEYLELIHPDDRDLVTD-IQRQLATLIGSIQFESRTNPSLGAVRTLSNSIKVIRDASG 1015 Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534 +R G + DITE+K + A Sbjct: 1016 RAIRATGTSLDITERKLAELEFRIAAT 1042 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 50/145 (34%), Gaps = 6/145 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + V + + R + D++++ DI + +L + + Sbjct: 769 VAMLDVTQLKHTEEEKQRSDVRLQAIIDAIPDLLFEIDIHGRYFSAHSPSKHLLPVPPEA 828 Query: 445 MHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + + N + + R + + F + + W + + Sbjct: 829 LIGKT---VREVMPEGAANIVMSAISEAYDTDRSQGRQ-FELTLPGGK-FWFELSVAKKP 883 Query: 504 NSNGDILRYIGIANDITEQKKSLEG 528 G+ +R+I ++ D+TE+K+S Sbjct: 884 KVAGEDIRFILLSRDVTERKQSELK 908 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 9/132 (6%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 R SG + + + P + G + + + Sbjct: 349 QVAKNRYLKLFKQSGSGILVLNQEHRILDANPAALEMFGYQREEFL--SLHLPRVLVDAE 406 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + +L+S + E+ D + R + + Y I +++T Sbjct: 407 VERVNPVLESMMAGESHT--GEWVHVRKDGTKFMAEVNARKLDDHT-----YFAILHNLT 459 Query: 521 EQKKSLEGILCN 532 +KK+ IL Sbjct: 460 NRKKNEHRILRL 471 Score = 46.1 bits (108), Expect = 0.030, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 57/217 (26%), Gaps = 11/217 (5%) Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 + + + A P I I + + + L + Sbjct: 586 GWKALGAFPIARNGKPFAIFIVYSPEIDAFDQETIALLNEMTSDISFALDNFDREAQRRL 645 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 Q L +R + + ++LG+ G + Sbjct: 646 AQDKLQLAQLEAA--ESRDRYRDLYEFAPIGYLSISKHGMITEVNWKVTSMLGVKRGEL- 702 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNS 505 +++ ++ ++ ++ + S G L ++ ++ + M + Sbjct: 703 -NEQHFSQFVIDEEKSRWQKLFLSMQDLDGGEELNFDIKLTHVSGAIITANLNCLRMDDD 761 Query: 506 NGDILRYIGIANDITEQKKSLEGILC-----NAFQDN 537 + + + D+T+ K + E A D Sbjct: 762 AEQPILRVAML-DVTQLKHTEEEKQRSDVRLQAIIDA 797 >gi|120608735|ref|YP_968413.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120587199|gb|ABM30639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax citrulli AAC00-1] Length = 1499 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 139/627 (22%), Positives = 254/627 (40%), Gaps = 17/627 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 A + + + + + +++ + A Q Sbjct: 878 VARLGAQAYVGLQLRSAEGQPIGFVFVVFREPLQQPGMVISTLRIFAARAAAEMARQASD 937 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + RQ+ + + D + D+ + G G + ++ + + Sbjct: 938 AHIRRQASLLDKARDAIIVRDLDHRITFWNEGAERLYGWTREEATGQ--SIAELLYQDTQ 995 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + R +G E D + + R + G + I DI + Sbjct: 996 EFLRAT---RATQEQGEWAGEIVQFHRDGRRLDVEGRWTLIQGEQGQPDAILAIDTDIGQ 1052 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K + I AF D+LTG+PNR +DR+ L + ++ ID+D +K +ND Sbjct: 1053 RKATEREIQRLAFYDSLTGLPNRMLLMDRMRHALATAQRRRQG-GALLFIDLDNFKTLND 1111 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIA 636 LG GD +L + R+ ++ D +ARL G+ F +++ + ++ Sbjct: 1112 TLGHDQGDVLLQQVAARLNTCVRSVDTVARLGGDEFVVMIEGLSTHPGELAMSARTVGEK 1171 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +A P L T SIG A + T E+LK A+LAMY AK G N + F Sbjct: 1172 ILAVLATPYVLQGYHYRSTPSIGVAPFGDGRTSTVGELLKQADLAMYQAKTAGRNTLRFF 1231 Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++ DL A+ + L Y P I + G+EAL++W HP+ G +S Sbjct: 1232 DPGMQAVVTARAELENDLRTALAREQFMLHYQPQIDRR-GSVTGVEALVRWPHPQRGMVS 1290 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ +AEE ++ + ++L + W+ + + +N++S+ E Sbjct: 1291 PGEFIPLAEETGLVLPLGRWVLHTACAQLARWQHVPGRGHLSMAVNVSSRQFHHEAFVED 1350 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + I+ T SR+KL +ES+ + + E + + LR G+ +LDDFGT S LSYL Sbjct: 1351 VVRAITATGAPASRLKLELTESLFVEDMETTIATMAALRSHGVGFSLDDFGTGYSSLSYL 1410 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S + AI+ +II +++++ +IA+ + L + G Sbjct: 1411 KRMPLDQLKIDQSFVRDLLADPNDAAIVDTIIALSRSLGLDVIAEGVETAEQRTRLEQAG 1470 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFP 958 C Q + PL ++ L ++ P Sbjct: 1471 CRAYQGYFFSRPLPETALEDFLVQKLP 1497 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 76/205 (37%), Gaps = 7/205 (3%) Query: 334 YERAVLLIPAWILI-----FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 + + + A + I + + +R + + ALV + L+ + Sbjct: 105 QGPSRMRMAACMPIKTTDGLTLGAVVVLDTARRALEESHREALVAIASQAMALLELRRQR 164 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +A + + ER L + D +WDW++ D + + + G+ ++ Sbjct: 165 RDVARRAQERAL--SEERFHLVARATADAIWDWNLTDDSMWWNEGMEVLFGVPLHTLPHD 222 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +W +H D D + + + E+R R D + W+ R + ++ G Sbjct: 223 STSWTQRLHPEDSDRVLESIHAAIEGDALHWMDEYRFRRQDGTYAWIRDRGFVIRDAQGQ 282 Query: 509 ILRYIGIANDITEQKKSLEGILCNA 533 R +G DI+ QK+S +A Sbjct: 283 GQRMVGGMTDISAQKQSALQAQRDA 307 >gi|311694391|gb|ADP97264.1| sensory box/GGDEF family protein [marine bacterium HP15] Length = 809 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 163/652 (25%), Positives = 285/652 (43%), Gaps = 11/652 (1%) Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368 + +T + + II+ + + L A +T N Sbjct: 160 GVILLTQFLKTFFVSILIIWI-FQHFVARHLTTMANYARDFSLTTTSKPLTLERPNT--- 215 Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 P+ + V + + + A Q ++ + S A+ S V D Sbjct: 216 PSNRNDELGRVTDAINQMRERLNADMERQQKDAAEIRKFSKAIEQSPSSVLICDRQWRIE 275 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRA 487 + G + S+ G L I +RD R G Q E Sbjct: 276 FANQKFTQLTGYEAASIIGKHPGALGDNDIENRDSRHLWQSIRLQVQRVGVWQGEVNSVR 335 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + + W + + P+ + G Y+ + DI+ +K+ + +L A D LTG+PNR Sbjct: 336 RNGERFWEQLIVTPIKDEAGGTTGYLILGEDISIRKRYEQQLLRQANYDILTGLPNRMLA 395 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 LDRL L + ++ VM +D+D +K IND LG GD++L+ RRI L+ Sbjct: 396 LDRLKLALAQARR-ESTLVGVMFLDLDNFKHINDTLGHDAGDNLLIEAARRISSCLRGTS 454 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +ARL G+ F +IL + A + K+ + P L +E+ VT SIG A + + Sbjct: 455 TVARLGGDEFLVILPGLTGPEASSQVAERILKTFSPPYILNGQEVFVTTSIGIAIFPTDS 514 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYH 725 S +L++A+ AMY AKH+G + F +R+ ++ + A+E E L + Sbjct: 515 DNSGTLLQHADAAMYQAKHKGKSSFAHFAPEMTEVSHERLKMESSMRRALELKEFELYFQ 574 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ + +EAL++W++P G + F+ +AEE +I I ++L R + W Sbjct: 575 PIVNTDSGTLCSVEALLRWNNPAMGMVMPDRFIPLAEETGLITPIGEWVLLEACRAAMGW 634 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 ++ I I +N++ + D E + ++ + +P +++L +E +++ N + Sbjct: 635 KEATGK-DIGISVNVSPRQFRDPGFTEAVMHALATSGLAPEQLELEITERLILDNSIETA 693 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903 +L +L K GI L++DDFGT S LSYL PFDT+K + S + + +++R+II Sbjct: 694 EILRQLDKAGIRLSVDDFGTGYSALSYLKSYPFDTLKIDKSFVQDVMKEPEDASLVRAII 753 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 MA ++ +IA+ + E L + GCD+ Q + PL L Sbjct: 754 NMAHSLGLRVIAEGVEEEAQTHFLKKEGCDFSQGYFYSRPLPAADFDAWLAN 805 >gi|330501786|ref|YP_004378655.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328916072|gb|AEB56903.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 1376 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 148/562 (26%), Positives = 268/562 (47%), Gaps = 15/562 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + D + S + D V + + G ++G + + L Sbjct: 808 QRRAEKDLRMAATVFEHSTAAILVTDPAGYIVQVNKAFSRVSGYSAGQVLDQLPGMLT-- 865 Query: 457 HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 DR + +RG + E ++ + + I + + GD++ Y+ Sbjct: 866 --ADRQQATHMQYILGQLNQRGSWEGEVWLKRKGGENFPAWVGITAVHDEEGDLVSYVCF 923 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+E+K S + I A+ D LT +PNR F DRL + L + N +M +D+D+ Sbjct: 924 FSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERH-NEWVVLMFLDLDR 982 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631 +K IND LG A GD +L + R+ + D +AR+ G+ F ++L + Sbjct: 983 FKPINDSLGHAAGDRMLKDVAVRLSACVDGDDTVARMGGDEFTLLLQPRATREGALNRAI 1042 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + S+A P L RE VTASIG A S+++KNA+ AMYHAK RG N+ Sbjct: 1043 HVAEQILSSLARPFVLEGREFFVTASIGIALAPQDGNELSQLMKNADTAMYHAKERGKNN 1102 Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ S +R+ ++ DL A E + L Y P + G+EAL++W+HP Sbjct: 1103 FQFYQADMNASALERLELESDLRHAQEQGQFVLHYQPQFSGDGRRLTGVEALLRWNHPTR 1162 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + EF+ + EEL ++ + ++LE R + +W ++ P + +N++++ + + Sbjct: 1163 GLVPPDEFIPVLEELGLVVQVGEWVLEESCRQLKAWHEEKIRIP-KVSVNLSARQFGEGD 1221 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ +T +P+ +++ +ES++M + + L L+++G+ + +DDFGT S Sbjct: 1222 LTARIATILERTGVAPACLEVELTESILMRDVSSAMQTLNELKRLGLCIAVDDFGTGYSS 1281 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P D +K + S + G E+ I R+II MA ++ +IA+ + ++ L Sbjct: 1282 LNYLKQFPIDVLKIDRSFVDGLPDGEQDAQIARAIIAMAHSLNMMVIAEGVESHAQLEFL 1341 Query: 928 TRMGCDYIQDSHVASPLGFNSI 949 GCD +Q + P+ Sbjct: 1342 REHGCDEVQGYLLGRPMQARQF 1363 Score = 76.1 bits (186), Expect = 3e-11, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 13/163 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + +Q + +R L D+++ D + +P + +LG + Sbjct: 659 IGVAKDITEQIERNQSLRDSEQRYRLLAESISDVIFSTDSALNLNYVSPSVEPVLGYSVN 718 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQ----------YEFRVRAADNQ 491 + L + + +L+ R RL + F AD Sbjct: 719 WVIANSFYSLAA-NPQQLEGLNLLLERIRDALGERDRLNRLRDELPDQLFVFDCLRADGH 777 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + +R+ M + +G +G+ DI++Q+++ + + A Sbjct: 778 KIPVELRLVLMWDESGRFEGILGVGRDISQQRRAEKDLRMAAT 820 Score = 73.1 bits (178), Expect = 3e-10, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 9/156 (5%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP-DIATILGLASGS 444 I + + + S V D+++ D+ +V + + LG + Sbjct: 528 SISDITSRKRIELSLIERERFWSEVVRSVPDLLYVHDMQNRQVLFSNHSLGLQLGYSKAE 587 Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + W+ +H +D + + I + V L+ R R + Q+HW IR + + Sbjct: 588 LRAMREDFWVQVLHPDDAEYYWRIRNLQKVVGDGLLLESVLRWRHRNGQWHWFSIREQAL 647 Query: 503 -SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + +G + R IG+A DITEQ + + +D+ Sbjct: 648 ARDDHGRVSRLIGVAKDITEQIE-----RNQSLRDS 678 >gi|224371380|ref|YP_002605544.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2] gi|223694097|gb|ACN17380.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2] Length = 708 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 158/620 (25%), Positives = 294/620 (47%), Gaps = 24/620 (3%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVI-----LIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + +T D D A G + ++ +++L G + ++ + R Sbjct: 87 ILMVTGMDDTDSTARAFEAGANDFIAKPINWVMLGYRAKYMLRAGQAFRELYLNENRLIK 146 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + W D+V + + +P+ ++ GL + I N +D + + Sbjct: 147 TQKLAKLGNWQIDLVNNVFSCSPEACSLQGLNPMDKPVTFDGFFEPIIANQQDMVKQTIS 206 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + V + ++V + ++ + + NG +G+ D+++ K++ E I Sbjct: 207 NAVKAKEN-FSLNYQVMNLNGTQKHILNQGEVFVDDNGVPEIMLGVVQDLSQLKQAEERI 265 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 AF D LTG+ NR F+DRL T + + + + + +D+D++KKIND LG +GD Sbjct: 266 RFLAFYDGLTGLANRMLFMDRLDTQIKKATRYNQ-KFALFFLDLDQFKKINDTLGHHIGD 324 Query: 590 DVLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAM 637 +L ++ + ++ D +ARL G+ F ++L + A A + Sbjct: 325 LLLKTVAETLKSCIRKTDTAARRDKDESGSMIARLGGDEFTVLLSDIKSPENSAIIAQRI 384 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +I ++ +E++VT SIG + + + T +LKNA+ AMYHAK RG N+ + + Sbjct: 385 LDAIPEAYSIEGKEVSVTTSIGISVFPADGSTPETLLKNADSAMYHAKDRGKNNYQFYME 444 Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + +R ++ DL + EL L Y P IR D +IVG EALI+W HP G I Sbjct: 445 SLNRAAIERFSMERDLKKSFARDELVLYYQPQIRFADRKIVGAEALIRWIHPHKGMIPPD 504 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AEE ++ IN ++L+ +R W I + +N++ L + + ++ Sbjct: 505 KFIPLAEETGLVIDINKWVLKTASRQNDEWTRAGLN-SIRVAMNLSGYKLATQNIIQDIK 563 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + + +++L +E+++M + + + + ++R++ IS+ LDDFGT S LSYL Sbjct: 564 EALKTVKFDSKKLELEITENILMQDDDETMQIFQQIREMNISIALDDFGTGYSSLSYLTS 623 Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +T+K + S + GS I+++II M ++ TIIA+ I + L R GCD Sbjct: 624 FPVNTIKIDRSFIMGSALQVDNRVIIKAIIAMGHSLGKTIIAEGIETKEQFDLLKRYGCD 683 Query: 934 YIQDSHVASPLGFNSILKLL 953 Q +++ P+ + KLL Sbjct: 684 EAQGYYLSPPIPADEFAKLL 703 >gi|78355597|ref|YP_387046.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218002|gb|ABB37351.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 595 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 140/558 (25%), Positives = 273/558 (48%), Gaps = 8/558 (1%) Query: 402 SDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + + + S D +W D +P A+I G ++ + +D Sbjct: 29 EKEQLFRVLLEYSADCEIW-IDACGVVRFVSPSFASITGYTPECLYRNPDYLAAIMVQSD 87 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 FR + + R G E R+R A + W++ R +++ G D+T Sbjct: 88 LPAFRAQ-ERILAERGGSFDVEVRIRTASGRECWVLCICRSITDDEGRPQGRRLTCRDVT 146 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++ + A D LTG+PNR FL++L ++ + +V++ID+D++K+IN Sbjct: 147 RRRLLAMQLQHQAGHDPLTGLPNRSLFLEKLDARVNGGRAARDGGASVVMIDVDRFKQIN 206 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 DVLG GD VL + R+ +L D L RL G+ F ++L + ++ +++ Sbjct: 207 DVLGHEAGDGVLRVVADRLRGILGGNDALCRLGGDEFCLLLAGGGRAEEVLARVQQIQQR 266 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698 + ++ R + +T S+G A+ + +M++N +A+ HAK GG +E F + Sbjct: 267 LMDSVDTGGRRLHLTVSVGVATHRPGQNAPEDMMRNGGIALQHAKRAGGGGLEVFSDWML 326 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++ +L A++++ +L + P++ L V +EAL +WDHP+ G +S ++F+ Sbjct: 327 ESALNHARLEMELHHALKDNAFHLEFQPLVDLHSGRPVRVEALARWDHPQRGAVSPADFI 386 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQAL 817 + EE I + ++LE W+ + + + +N++++ L L + + A+ Sbjct: 387 PVLEETGQILRLGSWVLENACMAAARWQRRHPELRSVGVSVNLSARQLAQPALVDQVAAV 446 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +S++ P+ +KL +E+++M NPE S L+L RL+ +G+ L +DDFGT S L+YL P Sbjct: 447 LSRSGLEPASLKLEVTETMLMDNPELSNLVLRRLKDLGVFLAIDDFGTGYSSLAYLQSFP 506 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S + G + I++++ +A ++ ++A+ + + L +GC+Y Sbjct: 507 IDTLKIDKSFVMGMTSDPGKFNIVKAVTALAHSLGLDVVAEGVEEQEQRIMLHAVGCEYA 566 Query: 936 QDSHVASPLGFNSILKLL 953 Q A P+ + L Sbjct: 567 QGFLFARPVPEKDLAAQL 584 >gi|297538407|ref|YP_003674176.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297257754|gb|ADI29599.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 933 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 159/675 (23%), Positives = 283/675 (41%), Gaps = 28/675 (4%) Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 + +A I I+ + R +++ P + + Sbjct: 269 VVVAYPLSEARAIGLAHSWFIIITAVVLGTILLVIILWQLRRLVVNPIGGDPALAIDVVK 328 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVL 412 L+ND GL + V+ + ER L Sbjct: 329 RIAAGDLEND--------GLEAKPNTLMSNVLNMRQKLREGIAALRESSERMVLSASVFE 380 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + D + D+ + + P I G + + G + ++ ND F I Sbjct: 381 HAHDGILITDVDLNILNVNPAFCKITGYSREAALGTHPKNIGFVD-NDPQFFEKIQQE-- 437 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G + E + + + I I + + I Y+ + +DITE+K++ + I Sbjct: 438 SEYAGEWRGEAKNLNNKGESYDAWIDIFAVRDDAQKITNYVCLFSDITERKQAADEIEHL 497 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 AF D+LT + NR+ +DRL S ++ +D+D +K +ND LG AVGD +L Sbjct: 498 AFYDSLTHLANRRMLIDRLKRAFFSSKRTGK-DGALLFLDLDHFKTLNDSLGHAVGDLLL 556 Query: 593 VSLTRRIGELLKFPDILAR---LSGNRFGIILISENN-----SLKIADFAIAMRKSIAMP 644 + R+ E L+ D +AR L G+ F ++L ++ + + + ++ P Sbjct: 557 QQVASRLTECLRGGDTVARVARLGGDEFVVMLEDLSSHPIEAAAQAEAVGQKILATLNQP 616 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 L E T SIG A + +++K+A++AMY AK G N + F + Sbjct: 617 YQLATHEYHSTVSIGVALFGDHVDAQDDLVKHADIAMYQAKRAGRNTMRFFDPLMQEAID 676 Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ +L A++ + L Y + +G EALI+W HP+ G I F+ +AE Sbjct: 677 TRADLERELRKALDRQQFQLYYQIQVD-QLNRPLGAEALIRWIHPERGMIPPFNFISLAE 735 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I I ++L+ I +W+ + I IN+++K N +QA + + Sbjct: 736 ETGLILPIGEWVLDTACAQIKAWQTNELTRDLTISINVSAKQFYQNNFVNQVQAAVYRHG 795 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 +PS +KL +ES+++ N E + + + L++IGI +LDDFGT S L YL +P +K Sbjct: 796 INPSLLKLELTESMLLENIEDTIVTMTALKEIGIRFSLDDFGTGYSSLQYLKRLPLTQLK 855 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + AI+R+II MAK++E +IA+ + + L ++ C Q Sbjct: 856 IDQSFVRDIVCDSSDKAIVRTIIAMAKSMELEVIAEGVETRDQQELLLKIHCKQFQGYLF 915 Query: 941 ASPLGFNSILKLLKE 955 P+ + + LK Sbjct: 916 GKPITIDELDASLKA 930 >gi|320107292|ref|YP_004182882.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Terriglobus saanensis SP1PR4] gi|319925813|gb|ADV82888.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Terriglobus saanensis SP1PR4] Length = 695 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 140/571 (24%), Positives = 264/571 (46%), Gaps = 7/571 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ + + +F++ ER + + D V D + + G + Sbjct: 118 LRALRYAVERKAMEESLFTEKERAQVTLNCIADGVVCTDSSGNITFLNVVAERMTGWSLE 177 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIRPM 502 G + + I + + G ++ D + I P+ Sbjct: 178 EASGRPMSEVYRIFDATTGIATNLANPLAFGNDGIYDKPNSALQRRDGIMTPIENSISPI 237 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G + ++ D++ ++ ++ +A D LTG+PNR DR++ + L+ Sbjct: 238 LDRLGCTTGAVMVSRDVSAARRMAIEMIHSAEHDFLTGLPNRMLLHDRVSQAIALAIRQQ 297 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + + ++ ID+D +K IND LG GD +L SL R+ ++ D ++R G+ F ++L Sbjct: 298 H-KVALLFIDVDGFKHINDSLGHPAGDKLLQSLAHRLVGCVRSSDTVSRQGGDEFVVLLS 356 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 S + A A + +IA P + R++ VTASIG + + + ++KNA+ AMY Sbjct: 357 SVRLAEDTAVAAKKLLAAIADPHLVDRRDLHVTASIGVSVYPDDGTDAETLIKNADTAMY 416 Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G + F+ ++ +R +E L A++ E ++ Y P + L +I+G EA Sbjct: 417 QAKAHGRQGYQFFKAVMNVKAVERQSTEESLRSALKRQEFHVHYQPRVDLRTGQIIGAEA 476 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ GNI +F+ IAE+ +I I ++L W + PPI I +NI Sbjct: 477 LLRWSHPERGNIPPDQFIPIAEDCGLILPIGEWILREACAQTQKWLQEGL-PPITIAVNI 535 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + + + A++ +T P ++L +ESV+M + E + ++L LR GI +++ Sbjct: 536 SGVQFGNEDFLADVFAILEETGLDPRHLELELTESVLMKHAESTEVILKTLRSKGIQVSV 595 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL D +K + S + + + AI+ +II M +++ ++A+ + Sbjct: 596 DDFGTGYSSLSYLSKFSLDALKIDQSFVRRIISSPEDTAIVTAIISMGRSLSLQVVAEGV 655 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 ++ L CD Q P ++ Sbjct: 656 ETLEELAFLQAHQCDEAQGYFFGRPSPPKNL 686 >gi|254513869|ref|ZP_05125930.1| ggef/eal/pas/pac-domain containing protein [gamma proteobacterium NOR5-3] gi|219676112|gb|EED32477.1| ggef/eal/pas/pac-domain containing protein [gamma proteobacterium NOR5-3] Length = 810 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 138/567 (24%), Positives = 255/567 (44%), Gaps = 18/567 (3%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL- 453 QG+F + SG+ + D + I G + G + L Sbjct: 250 AAKQGLFQA----AAVFKNSGEGILISDEKGLIRDVNAAFSQITGYSRDEAIGQATSLLR 305 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 H D + ++ + + G + E R ++ I + +G ++ Sbjct: 306 SGRH--DAEFYKKMWHALKE--TGTWRGEIWNRRKSGAVFPELLTISKI---DGQNSGFV 358 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 I DIT+ K++ E + A D LT +PNR +RL + + R V +DI Sbjct: 359 AIFTDITQLKETEEQLQKLAHYDPLTELPNRYLINERLQQSIRRAQRRSE-RLAVFFLDI 417 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K IND LG GD +L R+ ELL+ D + R+ G+ F ++L N+ + Sbjct: 418 DSFKNINDSLGHLAGDKLLAMTANRLRELLRDDDTVGRIGGDEFLMLLEDINSPDVATNI 477 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + ++ P L R ++V+AS+G + + T+ ++ NA+ AMY AK +G N Sbjct: 478 AEKIIGALRKPTILEGRSVSVSASVGISIYPDDGQTAETLMSNADAAMYSAKEQGRNTFR 537 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + + V+I L A +E L + P I ++ ++GLE L++W HP G Sbjct: 538 FYSENLTRAAFQNVLIDSALREAKSRNEFRLAFQPQIDIVTNSLLGLEVLLRWHHPTLGT 597 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S ++F+ AE +I+ I ++LE+ W + P + +N+++ + Sbjct: 598 VSPAQFIPQAERTGLIRDIGQWVLEQACLQGNKWLAEGL-PFGRLAVNVSAPQFRAEDFV 656 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + ++ ++ + P+R++L +ESV++ + E+ + LR +GI +DDFGT S LS Sbjct: 657 DQVRQVLEYANFPPNRLELELTESVLVQDTEQLIGNMDELRAMGIQFAIDDFGTGYSSLS 716 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P D +K + S + + I +++ + + + +IA+ I E + L Sbjct: 717 YLKKMPIDRLKLDKSFVDNISTDDNDRIIAEAVVALGQAMGLEVIAEGIEYEEQARALRD 776 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GC Q P+ + I +L++ Sbjct: 777 IGCTQFQGFLYGMPMYTSRIEGVLRKE 803 Score = 63.4 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 7/111 (6%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I D LG + G N+L +H DR + + + +E Sbjct: 156 IEGDIKLANSAWELALGYTPEELIGK--NFLELVHEEDRAVTVKEMQNLSKGLKTLY-FE 212 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 R R + + + I+ +G DI+++ + +G+ A Sbjct: 213 NRYRHKNGSYRVIAWSAAA--ADQDSIICAVG--RDISKENAAKQGLFQAA 259 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 1/117 (0%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 +G W W+ + D +L + + + L + D F + + Sbjct: 24 AGISTWRWEAHSGEFQLSDDGIRMLQVRDDELPLSLDTILGQVVNEDVAGFEAAMARLIT 83 Query: 474 YRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 G+ + +FR + W R +NS + G+ D+T Q+ + + Sbjct: 84 EPEGKAQEVDFRADLDSGEQRWFRAIGRSYANSEQTVTHAAGVLLDVTAQQSAQQYY 140 >gi|70733696|ref|YP_257336.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens Pf-5] gi|68347995|gb|AAY95601.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5] Length = 639 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 150/594 (25%), Positives = 274/594 (46%), Gaps = 15/594 (2%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS---DGERQSLAV---LGSGDIVWD 420 Q ++ ++ F +L + + D ER A + + V Sbjct: 43 WQLVGGYAWAVVSAVLIFFARARLLRVLGADRWLRHQQKDRERLRQAAAVFDCTREGVLV 102 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D V I G + G + H + ++++ DS + Sbjct: 103 SDTQGQIVHVNRAFIEITGYQREEVLGRQPSLFKSGH-HSAQFYQSMFDSL--QKTDEWS 159 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 E R + + IR + + G++ Y+ + +DI+ K S + A D LT Sbjct: 160 GEIWNRRKSGEIYPQWQTIRAIRDEQGELTHYVAVFSDISAIKDSEHELAHLAHHDPLTD 219 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR F DR L + +++ID+D +K IND LG VGD +L ++ R+G Sbjct: 220 LPNRLLFTDRAEQALASAQIHKRG-CAMLMIDLDHFKMINDSLGHNVGDQLLKAVAERLG 278 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 + LARL G+ F ++ S ++ A A + + P L E+++ + ASIG Sbjct: 279 GMFGPGITLARLGGDEFAVLAESCPQLVQAAALAQRIIDGLKEPFQLGEQQVVINASIGI 338 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENS 718 + + S +++S++L+NA+ A++ AK G N + + ++ +L A++ Sbjct: 339 SLFPSDALSASQLLRNADAALFKAKSAGRNGYALYTEELTAHAQQRVEIAFELRRALDQQ 398 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 EL + Y P+ L +VG+EAL++W+HP+ G +S +EF+ IAE MI I+ +++++ Sbjct: 399 ELRVYYQPVHDLKTSRLVGVEALVRWEHPERGLVSPAEFIPIAERTGMIAEIDAWVMQQA 458 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 R + W+ + FI +N++++ +EL + + ++ +T P+ ++L +ES VM Sbjct: 459 CRQMCQWQADGVVLS-FIAVNVSTRLFARSELYQQVAQVLHETGLDPAYLELEVTESAVM 517 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896 +PE + + RLR++GI L +DDFGT S L L +P +K + + G E Sbjct: 518 DDPEVALEQMHRLRELGIRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPFDEDDA 577 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 AI R II +A+++ + A+ I + L CD Q P+ ++ Sbjct: 578 AISRVIIALAQSMGMQVHAEGIEQVEQARFLLEHACDLGQGYWFGRPMPAAQLV 631 >gi|89902164|ref|YP_524635.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89346901|gb|ABD71104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 1169 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 142/569 (24%), Positives = 255/569 (44%), Gaps = 18/569 (3%) Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 E +A S + + D + I G ++ + G R Sbjct: 606 ERKQAEEALRIAATAFESQEGMTVTDAQGAVLRINRAFTEITGYSADEVVGHNPRLLQSG 665 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D+ + + +S R G Q E R + + + ++ I + + G + Y+G Sbjct: 666 RH--DKAFYAAMWESIR--RTGSWQGEIWNRRKNGEAYPELLSITAVKENGGIVTHYVGT 721 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DIT +K + + I AF D TG+PNR+ LDRL L SA + +++ID+D Sbjct: 722 FMDITRRKAAEDEIRNLAFFDLQTGLPNRRLLLDRLQQALAASARHRR-QGALLLIDLDN 780 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKI 630 +K +ND LG GD +L + +R+ + +ARL G+ F ++L + + + + Sbjct: 781 FKTLNDTLGHDKGDLLLQQVAQRLASCVHEGGTVARLGGDEFVVMLENLSEHLEAAATQA 840 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + S+ +L E TASIG ++ + T+ ++LK A+LAMY AK G N Sbjct: 841 ETLAKRILASLKQTYSLDGYEYQSTASIGITLFSEQQETTEDLLKRADLAMYQAKAVGRN 900 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + F ++ L AV + E L Y + + G EAL++W HP+ Sbjct: 901 TLRFFDPEMQAVVTSRAALEAGLRRAVTSDEFLLYYQAQVDGQ-GHLTGCEALLRWQHPE 959 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G ++ EF+ +AE+ +I + ++L+ + W + M + + +N++ + Sbjct: 960 RGLVAPGEFIALAEDTGLILPLGRWVLDAACTQLAQWATRPEMAHLTVAVNVSVRQFHQA 1019 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + ++ T +P R+KL +ES+++G+ E + L++ G+ +LDDFGT S Sbjct: 1020 DFVNQVLTVLDSTGTNPQRLKLELTESLLIGDVEDVIAKMSILKEKGVGFSLDDFGTGYS 1079 Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL +P D +K + + AI R +I + ++ +IA+ + E Sbjct: 1080 SLSYLKRLPLDQLKIDQGFVRNILIDPNDAAIARMVIALGDSLGLAVIAEGVEIEAQRDF 1139 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R+GC Q PL + ++ Sbjct: 1140 LARLGCHACQGYLFCRPLPLDQFEAFVRR 1168 Score = 46.5 bits (109), Expect = 0.021, Method: Composition-based stats. Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 7/171 (4%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDI 423 ++GG L+ + +++ + + + D ++ + Sbjct: 453 WLWTVLGGSALVFAGSAYFLLRLRRSNRMLEALNTQVQRSQNQLQATFDAIPDPLFVLGL 512 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 A +L + + G + + + L + +F Sbjct: 513 DGRYYDCRSSRADLLAAPAEDLIGKTVS--DVLPPEAASICLSALREA-NEKGTSTGKQF 569 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++ A + + + R + R+I ++ DITE+K++ E + A Sbjct: 570 ELQLAHGRAWFELSVARKSVGQRQEP-RFIVLSRDITERKQAEEALRIAAT 619 >gi|89900840|ref|YP_523311.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89345577|gb|ABD69780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 1034 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 158/760 (20%), Positives = 301/760 (39%), Gaps = 29/760 (3%) Query: 215 SSMLIP--TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272 + + +VL ++ F + + + +W A L L + L Y Sbjct: 280 ERLYHFKQLASYPVLVLVGLASKDVFAQQ---EDTLQHRVWEAVILSVLLLVLGVLLSWY 336 Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332 + R H+ + + + ++ + + + F + Sbjct: 337 VVIRRRHSTAQRQALVQLQSLTHHVPGVVFQYLLRPDGSSCFPFASAGLHKIFRLSPEAV 396 Query: 333 GYERAVLLIPA----WILIFIWFIGLWMAITKRLDNDII------QPALVGGLVLIVILI 382 + A L + A+T +D + L + Sbjct: 397 AQDAAPLFALMHPDDAAGVAASIQASSRALTPWVDEYRVKFGDGTVRWLSSKAAPQKLDD 456 Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 G + ++ + S AV S + D P + G Sbjct: 457 GSVLWHGFVSDVTAHKQAEESLITLSAAVEQSPVSIVISDPRGLIEYVNPMFEQVSGYRR 516 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G L H D +R + + + EF R D W I P+ Sbjct: 517 AEVMGQNPRILSS-HEKSEDEYREMWATLLAG--DIWHGEFHSRRKDGSLFWEQAAIAPI 573 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + +G + Y+ I DIT++K + I AF D LTG+PNR+ DRL +L + Sbjct: 574 FDDHGRPIHYLAIKEDITKRKAAEAEIEHLAFYDLLTGLPNRRLLNDRLQQVLAVGTRSR 633 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID+D +K +ND G GD +L + +R+ ++ D +ARL G+ F ++L Sbjct: 634 R-HGALLFIDLDNFKNLNDTQGHEQGDVLLQQVAQRLNFCVRECDTVARLGGDDFVVMLQ 692 Query: 623 SENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 + + + ++ P +AS+G A + +S+ T E+LK A Sbjct: 693 DLSEQQTEAATQAEGVGQKILDALHQPYPFGHFTHHGSASVGVALFNASQDTVEELLKRA 752 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LA+Y AK G N + F ++ D+ L ++ ++ L Y P + + Sbjct: 753 DLALYQAKDAGRNTLRFFDPDMQAVISARAEMEADMRLGLQENQFLLYYQPQVNHA-GRL 811 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G+EAL++W HP G ++ + F+ +AE+ +I + +++E R + WR QA+ + Sbjct: 812 IGVEALVRWQHPLRGLVAPAHFIPLAEDTGLILPLGQWVMEAACRQLQLWRTQAHTAQLT 871 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 I +N+++ + A +++T R+KL +ES+++ + + + L+ G Sbjct: 872 IAVNVSALQFHGESFVSDVLATLARTGAPADRLKLELTESLLVKDVDGVIAKMVALKAHG 931 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913 + +LDDFGT S LSYL +P D +K + S ++ S K A++R+ + M + + + Sbjct: 932 VGFSLDDFGTGYSSLSYLKRLPLDQIKIDQSFVSDALSNPKDAALVRATVAMGRGLGMMV 991 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 IA+ + ++ L GC Q P+ + L Sbjct: 992 IAEGVETQMQRDFLEGEGCLNFQGYFFGRPVPVAELACFL 1031 >gi|313496581|gb|ADR57947.1| Sensory box protein [Pseudomonas putida BIRD-1] Length = 631 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 148/622 (23%), Positives = 281/622 (45%), Gaps = 13/622 (2%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A+ ++ + + + + + L L + + V VL+ L+ + +L Sbjct: 13 ALYVVLSILWLALAEVMLHSMTDDPLALTVGRQINVVVWVLLSALLIYVSRVRLLNFIGH 72 Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + D ER +A + + V D V I G + G + Sbjct: 73 GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSK 132 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 H ++ + + +G E R + + I + + G++ Y Sbjct: 133 FKSGHHG-LAFYQEVFATLAE--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHY 189 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + +DI+ K S + + A D LTG+PNR F DR+ L + + ++++D Sbjct: 190 VAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRVEQALAAAQANKRG-CALLLLD 248 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D ++ IND LG +GD +L + R+GE+L LARL G+ FG+++ + + Sbjct: 249 LDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGK 308 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + + P + ++AS+G + + S + + ++L+NA+ A+Y AK G Sbjct: 309 LAQCIIERMREPFQFEGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACY 368 Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + ++ +L A+E EL + + P+ L VG+E L++W HP+ G Sbjct: 369 ALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRG 428 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + EF+ IAE +I I+ ++L++ R ++ W+ Q F+ +NI+S+ +EL Sbjct: 429 LVPPGEFIPIAERTGLIAEIDTWVLQQACRQMVQWQAQGRQLT-FVGVNISSRLFGQHEL 487 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ T +P+ ++L +ES VM +PE + L RLR++G++L +DDFGT S L Sbjct: 488 YRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSL 547 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 L +P +K + + G E IAI+R II +A+++ + A+ I L Sbjct: 548 LRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLL 607 Query: 929 RMGCDYIQDSHVASPLGFNSIL 950 + C Q P+ + Sbjct: 608 QEECQLGQGYWFGRPVPAEDLR 629 >gi|226311730|ref|YP_002771624.1| signaling protein YkoW [Brevibacillus brevis NBRC 100599] gi|226094678|dbj|BAH43120.1| probable signaling protein YkoW [Brevibacillus brevis NBRC 100599] Length = 805 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 152/808 (18%), Positives = 322/808 (39%), Gaps = 47/808 (5%) Query: 185 VNSFTLYRGIIIGVASLLAIFLTI------FYMVNRSSMLIP-TFAMAWVVLGYISIDFG 237 S+++ + S +A + + Y R + + A++ + + Sbjct: 5 DQSYSMTLFFLSYFISAMASYTALDLGARLHYAKGRGRVFLLCAGAVSMGLGIWAMYFVA 64 Query: 238 FLSKLVNLPSGELLIWRACSEIA--LSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC--- 292 L+ + + + S + LSS+L +++ ++ G + Sbjct: 65 MLALHLPIAVEYDHLIVFFSIVLAVLSSALTLWIVSEQSMSKTRVVKGSVVIGTGIAGMH 124 Query: 293 ---IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349 +A + + I +A + + + L + + + Sbjct: 125 YTGMAAMMMNAVILYDWLWFTVSIFVAILFSMVALILTFQLRSVDPVEGLWRKIFAGLLM 184 Query: 350 WFIGLWMAITKRLDNDIIQP-----------------ALVGGLVLIVILIGFTVIQHVLA 392 M T + ++G + ++++++ + Sbjct: 185 GASITGMHYTGMYATTFVAHEHMTIAVIPYDDSGLIATMIGIVSVLILVVTLASVYVDKQ 244 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + +R + D V + I + P + P+ Sbjct: 245 FAGKTLRVLESDQRYKSLFEHNYDGVIFYSIDGTQSVMNPAAMRLT----KEQSLPLEKL 300 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D + T + V + + + + + P+ + I Sbjct: 301 KTMCISTDAELISTHFTNAVQGDAR--NCDITLTTREGCQLHLNMTHTPVF-VDQQITGV 357 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 I DIT +K+ I AF D+LTG+PNR+ +L ++ + D + V+ +D Sbjct: 358 FMIVRDITNKKEYEAKINYLAFHDSLTGLPNRRFVEQQLDQVIMEAQKTDQ-QVYVLFLD 416 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K +ND LG GD +L + R+ E + + RL G+ F +IL ++ Sbjct: 417 LDHFKLVNDSLGHDFGDLLLQEASLRLRECVGKKGTVYRLGGDEFMVILTDVTERE-VSS 475 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + ++I + E+ +T SIG + + S +++NA+ AMY AK +G N Sbjct: 476 MANEINETIEQAFFIHGHELYITTSIGISRYPEDGQDRSVLMRNADAAMYAAKDKGKNSF 535 Query: 693 ESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + + +D++ I+ +L A+ E L Y P + IVG+EALI+WDHP+ G Sbjct: 536 HLYVPNLEQAVNDKMNIQNELNRALARQEFLLHYQPQVSAKSGAIVGVEALIRWDHPERG 595 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ +AEE +I I ++L + W+DQ P+ + +N++++ L + Sbjct: 596 LLLPDQFISVAEETGLIVPIGEWVLRTACKQNKQWQDQGLK-PLRVAVNLSARQFLKQDF 654 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ +T +P ++L +ES ++ + R+ L L+++G+ + +DDFGT S L Sbjct: 655 TQMIAEILHQTRLAPEYLELEITESSMI-DVHRATQALKELKQLGVHVAIDDFGTGYSSL 713 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 YL P + +K + S + AI+ +II MA +++ +IA+ + + ++ L Sbjct: 714 YYLKEFPLNRLKIDRSFVRDMIEQPSNQAIVSTIISMAHHLQMHVIAEGVETKEELAFLQ 773 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956 C+ +Q + PL + L+ + Sbjct: 774 EHLCEEVQGYLFSRPLPSEDVAFYLQAQ 801 >gi|82702267|ref|YP_411833.1| response regulator receiver /GGDEF/PAS/PAC domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82410332|gb|ABB74441.1| response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196] Length = 756 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 149/574 (25%), Positives = 277/574 (48%), Gaps = 32/574 (5%) Query: 415 GDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 + W WD+ P+ + G G + +H D + L Sbjct: 177 PQVFWIWDVHDQTFRYINPEWEKMTGQRVGR-GDRLEKIFEAVHPEDMERV---LREAAD 232 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 RG + +++R+ D W+ R P+ +S G + R +G+ +DIT++K++ + +L + Sbjct: 233 LPRGGVDHDYRLLLPDMSIRWVHSRTFPIKDSAG-VHRIVGVMDDITQRKQADQQLLQVS 291 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LT +PNR F + L ++ S + + +V+ +DID +K IND LG A+GD++L Sbjct: 292 RYDALTHLPNRILFYESLRKVIKQSEMNHRI-VSVLFLDIDNFKNINDTLGFALGDELLR 350 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + R+ E L+ DI+AR+ G+ FG IL+S ++ A +R+++ P +L ++T Sbjct: 351 EFSLRLLECLRVTDIVARIGGDEFGCILVSADDLGNAGLVASKIREALRQPFDLQGHQVT 410 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDL 711 VTASIG + + I + ++KN + AMY +K G + F +++ + L Sbjct: 411 VTASIGISVYPIDSIDADTLVKNGDTAMYQSKTAGRDTYRFFTPEMNIRAIEKLDQENAL 470 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A++ E L Y P + L + + G+EAL++W P+ G + EF+ E+ +I + Sbjct: 471 RKALDREEFVLHYQPKVDLSNGWVTGMEALLRWKRPEHGVVEPLEFIPALEQTGLITRVG 530 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM----------------- 814 +++E + R I WR I + +N++ + + L + + Sbjct: 531 AWVIESVCRQIAEWRHAGIGE-IPVSVNVSGRQFSRSTLNQDVIRATQANGIQPALLEFE 589 Query: 815 ---QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + + ++L +ES +M + +++ +L RL+ +GI +++DDFGT S L+ Sbjct: 590 LQTERALRENSIDSDLLELELTESSLMMHAKKTVSILQRLKALGIQISIDDFGTGYSSLA 649 Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 Y+ P D +K + S + T AI +II MA ++ ++A+ + L Sbjct: 650 YVKRFPIDVLKIDRSFIQEITTNSADAAITTAIIDMAHSLHVRVVAEGVETAEQFDFLKG 709 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 GCD +Q +++ PL N I +LL +K T Sbjct: 710 RGCDEVQGFYLSPPLPANEISQLLLSGNRRLKPT 743 >gi|118581541|ref|YP_902791.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118504251|gb|ABL00734.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter propionicus DSM 2379] Length = 754 Score = 542 bits (1397), Expect = e-151, Method: Composition-based stats. Identities = 141/581 (24%), Positives = 261/581 (44%), Gaps = 22/581 (3%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + + + V S D+++ D I ++LG + + G Sbjct: 143 RDHVLITSRLQHSEQLHRFLVESSPDLIFTLDNSGCFTFINSRIESLLGFSREELIGSCY 202 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-------RAADNQFHWMIIRIRPMS 503 + + D + R E R+ R +N +++ + Sbjct: 203 D--TIVLAEDLKTAQHPFTERRRGNRATTNLEIRLKCTPSHYRNFENHHIVVMMSSTGIY 260 Query: 504 NSNGD-------ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + + G+A DIT++K + E I AF D+LT +PN++ F DRL + Sbjct: 261 GEHDNDFPLARCFSGTYGVARDITDRKIAEETIAFQAFHDHLTHLPNQRLFKDRLEMAIT 320 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 S + VM ID+D++K +ND G A GD++L ++ R+ ++ D LAR G+ Sbjct: 321 HSKRHGGM-VGVMFIDLDRFKIVNDTHGHAAGDELLKNVAHRLRHCIRAVDTLARKGGDE 379 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F ++L + A A + + +P ++ ++ V+ASIG A + +LK+ Sbjct: 380 FTVLLPDLMRAEDAALIAEKIMHELGIPFSVAGQKFHVSASIGIAIVPRDGESIDTLLKS 439 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY K G N F ++ +L A+ NSE L Y P + + Sbjct: 440 ADIAMYRVKASGKNGYRFFTPDMNICYTKRISLENELRQAIPNSEFELFYQPQVSINGAS 499 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I+GLEALI+W HP G ++ +F+ +AEE MI I ++L R + WR + Sbjct: 500 IIGLEALIRWRHPTHGLLNPGDFIELAEETGMIGTITDWVLAEACRQLAHWRSM-GFSDL 558 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N++ K+ +++ E + +S P +++ +E +++ + + LR+ Sbjct: 559 RIAVNVSPKEFERDDMVEQLSRFMSTFQLPPDSLEVEITEKILLRDTPSVINKMKTLRER 618 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETT 912 GI +++DDFGT S L+YL P T+K + S + +E+ I+++II +A Sbjct: 619 GIRISIDDFGTCYSSLNYLRQFPISTIKIDQSFVRDLSEEHRISPIIQAIIGIANGFGLH 678 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++A+ + ++ L +GC+ +Q + P I ++L Sbjct: 679 LLAEGVETHCQMQTLHALGCNEMQGYLFSRPAPAEQIEQML 719 >gi|332527012|ref|ZP_08403097.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus JA2] gi|332111447|gb|EGJ11430.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus JA2] Length = 687 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 146/574 (25%), Positives = 264/574 (45%), Gaps = 14/574 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448 V + + + S + + D+ V I G A + G Sbjct: 117 VQRDVTARRDAMNKLSLAARVFEQSNEALAIADVDGRFVAVNDAFTRITGYAEHEVIGQN 176 Query: 449 IRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 R +H +D F L + RGR + E R D + + + + + G Sbjct: 177 PRLLKSGLHDDDFYHRFWQELRT-----RGRWEGEIWNRRKDGTVYPEWLSVGRVVDEAG 231 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 L Y+ +DIT +K + E + A+ D LTG+PNR +R + L ++ Sbjct: 232 RTLNYVASFSDITARKHAEENVRRLAYYDPLTGLPNRALLQERASQALQIAVRTGE-PVA 290 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 +M +D+D +K +ND LG +GD +LV+L +R+ L+ D LAR+ G+ F ++L S ++ Sbjct: 291 LMFLDLDHFKNVNDTLGHPIGDRLLVALAQRMRPALRDQDTLARVGGDEFVLVLPS-TDA 349 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + + + P+ L ++TVT SIG A + + + A+ AMY AK Sbjct: 350 TGASYVAQKLLQIVQEPVQLDGHDLTVTPSIGVAVFPTDAADYDTLFAFADAAMYRAKMS 409 Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + + + L A+E E+ L Y P + D IVG+EAL++W Sbjct: 410 GRATFSFYTAEMQAQMARTLRVENALRRALERDEMQLHYQPQCQAADGRIVGVEALLRWQ 469 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G I +EF+ +AE I I ++L+ R + +W+ A +PP+ + +N+++ L Sbjct: 470 HPELGWIGPAEFVPLAETNGQIAVIGRWVLDTALRQLRAWQ-LAGLPPLRMAVNLSAVQL 528 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 L E + L+ + P+ ++L +E++ +PE S + RLR +G+ + LDDFG Sbjct: 529 RQPGLAELVGELLRRHEVDPAWLELELTETMAWDDPEGSARQIARLRAMGLRIALDDFGA 588 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 + S+L T+K + SL+ G + +++ +I+ +A+ + +A+ + Sbjct: 589 GYTSFSHLSLFQAGTLKIDRSLVAGIERGSHQASVVAAIVNLARTLRMHTVAEGVETPGQ 648 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L GC+ Q P+ + L++ER Sbjct: 649 REALLAAGCESAQGWLYGRPMPAEAFEALIRERQ 682 Score = 87.3 bits (215), Expect = 1e-14, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 32/221 (14%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + A+ V D R + G ++ M G L Sbjct: 1 MHDAVLRLLKLHQNALDAISQGVLITDANRRTTYVNAAFVELTGYSAEEMIGSSCALLQG 60 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + + + + R E D W ++I P+ +G + +++G+ Sbjct: 61 --PGTSADTVQAMRAALD-RGEPFHAELLNYRKDGTPFWNELKIVPVHADDGTLTQFVGV 117 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID- 574 D+T ++ ++ + A + F + + D+D Sbjct: 118 QRDVTARRDAMNKLSLAA-----------RVFEQ--------------SNEALAIADVDG 152 Query: 575 KYKKINDVLGIAVG---DDVLVSLTRRIGELLKFPDILARL 612 ++ +ND G +V+ R + L D R Sbjct: 153 RFVAVNDAFTRITGYAEHEVIGQNPRLLKSGLHDDDFYHRF 193 >gi|260219535|emb|CBA26380.1| Uncharacterized signaling protein PA1727 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 649 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 137/620 (22%), Positives = 266/620 (42%), Gaps = 22/620 (3%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI------QHVLATGYFSQGIFSDG 404 + M + R L + +L G + + + Sbjct: 25 SLIAGMLESGRAPEAREMLLLHRTGREVPVLTGHAAVTGHRNDKELFRFDIDLSERKQTE 84 Query: 405 ERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 +A + + + D R + I G + G + + Sbjct: 85 AELRVAATAFEAQEGMMVTDAHRRILRVNEAFTRISGYEDVEVIGNTPTMFSSGWHD--N 142 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F L++ + G Q E R + + H + I +++ G + ++ DIT++ Sbjct: 143 AFYEELNASLA-STGTWQGEMWNRRKNGEIHPQWLHITAVNDETGAVSHFVATVTDITQR 201 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K + + I AF D LTG+PNR+ +DRL L SA + ++ ID+D +K +ND Sbjct: 202 KAAEDQIRQLAFYDPLTGLPNRRMLIDRLRHALASSARSAHC-GALLFIDLDHFKNLNDT 260 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAM 637 LG GD +L + +R+ + ++ D +ARL G+ + ++L + IA + Sbjct: 261 LGHDKGDLLLQQVAQRLLDTVREEDTVARLGGDEYVVMLEGLDEFHDIAASQATAVGEKI 320 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + P L E T S+G + ++ ++LK A+LAMY AK G N + + Sbjct: 321 IAKLNWPYQLAGHEFHSTPSMGLTLFNGHEVEVEDLLKQADLAMYQAKGAGRNGLRFYDP 380 Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + R ++ D+ + + L + P + ++G EAL++W+HP G +S + Sbjct: 381 QMQAAVTKRAELEADIRQGILFGQFVLFFQPQVD-KSGCVMGAEALLRWNHPTRGMVSPA 439 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AE+ I + ++LE +++W + + +N++S+ + + + Sbjct: 440 EFIPVAEDSGQILTLGSWILEAACAQLVAWAADPETRALTLAVNVSSRQFRQQDFAQHIL 499 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ T +P +KL +ES++ N + + + LR G+ +LDDFGT S LSYL Sbjct: 500 DMLDYTGANPHCLKLELTESLLADNLDDVIVKMSALRARGVGFSLDDFGTGYSSLSYLKR 559 Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P D +K + S + + AI+++I+ + K + +IA+ + L GC+ Sbjct: 560 LPLDQLKIDQSFVRDVLTDPNDAAIVQTILALGKTLGLKVIAEGVETGEQRDFLVANGCN 619 Query: 934 YIQDSHVASPLGFNSILKLL 953 Q + P+ + L+ + Sbjct: 620 SYQGYLYSRPVPADEFLRYV 639 >gi|78356398|ref|YP_387847.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218803|gb|ABB38152.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 904 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 150/617 (24%), Positives = 278/617 (45%), Gaps = 14/617 (2%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-L 409 + A + ++ D+ GL+ + + F ++ ++ + E L Sbjct: 289 LVVGLAAAVQDINADMYALNRQQGLLAVTAFLFFALMALGFLREQRTRALRRSAELYRQL 348 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A +W D + +P I G + +H D FR + Sbjct: 349 ADTAYDIELW-HDAEGKLLYVSPSCERITGYPAADFMADAGLLERVVHREDLPAFRMHMS 407 Query: 470 S--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + E+R+ + W+ + R + S+G D+TE K + Sbjct: 408 APGMLEGE----SLEYRLLHRTGKVRWVSVVAREIWTSDGICQGVRSSVRDVTESKLMEK 463 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + + D LTG+ NR L R+ + +A + V+ +DID++K IND LG Sbjct: 464 ELDYKSQHDELTGVANRSLCLARIRKAMVRTAPRPEVGFAVLFLDIDRFKIINDSLGHEQ 523 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD VL + R+ ++ D +AR G+ F I+L + A ++K P+ L Sbjct: 524 GDMVLAEMAERLVASVRPCDTVARFGGDEFVIVLEELPGPREAVRMARLIKKRFKEPLLL 583 Query: 648 LEREITVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 E+ +T SIG + + + ++NA +AMY AK G + ++ FR + Sbjct: 584 EGHEMRITCSIGMIFEYGGDSVGAQAAVRNANIAMYRAKAAGRDKLKVFRPKMLAAAASV 643 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + ++ D+ ++ E ++ Y P+ R D + G EALI+W HP+ G I F+ +AEE Sbjct: 644 MTLENDMRSGLQRDEFFMEYQPVQRSDDGTLTGFEALIRWRHPEKGIIGPDHFIPLAEES 703 Query: 765 CMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I L L + ++ W + +F+ +N++++ +L + ++ + Sbjct: 704 GLIVDIGLSALRKSCCEMARWCRRYPGCEELFLAVNLSARQFSQPDLVTCVSGILQDSGL 763 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P ++KL +ES +M N E + ++ RL++IG+ L +DDFGT S L+YL +P DT+K Sbjct: 764 DPRQLKLEITESTIMSNAETALAMMHRLKQIGVQLAIDDFGTGYSSLAYLQKLPVDTLKV 823 Query: 884 NGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + ++ E+ + I+RSII +A +++ +A+ + ++ L +GC Y+Q + Sbjct: 824 DRMFVSAMEEQAGCLEIVRSIIVLANSLQLNTVAEGVENSRQLEMLRNLGCSYVQGFYFH 883 Query: 942 SPLGFNSILKLLKERFP 958 PL + LL R P Sbjct: 884 KPLPVAAAELLLNGREP 900 >gi|237807254|ref|YP_002891694.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Tolumonas auensis DSM 9187] gi|237499515|gb|ACQ92108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Tolumonas auensis DSM 9187] Length = 1101 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 141/559 (25%), Positives = 258/559 (46%), Gaps = 12/559 (2%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRD 462 + + + + + D + P A + G + + G + H Sbjct: 543 LRQSATVFDNTREGIMITDKNAQIIRVNPAFAELFGFSQHELQGKTPVIFKSGKH---TH 599 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F + + + E R DN +I I + N + Y+ + +DI++ Sbjct: 600 EFYQHIRDSL-NTSAFWRGEIWNRRKDNHIIPLICSISAVRNDKQQLTHYVSVYSDISKL 658 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K S + A D LT +PNR L+ +DL+ + + R ++++D+D++K +ND Sbjct: 659 KASEAKLAHLAHHDPLTQLPNRTLLTINLSHAIDLAVRNHH-RIALLMLDLDRFKDVNDS 717 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G +GD +L + RR+ ++ D + RL G+ F +++ + FA + + + Sbjct: 718 FGHQIGDALLQEVARRLRRRVRISDTICRLGGDEFTVLIEGNPALHDVEHFAEDILQLLK 777 Query: 643 MPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P +L RE+ + ASIG + + T E+L+ A+ AMY AK G + F Sbjct: 778 DPFSLPNGREVIIGASIGISLYPEHGQTPKELLQQADAAMYRAKAHGRSCFRYFSDELTR 837 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 R+ ++ L A+ +EL L + P I + I+G EAL++W P G IS ++F+ Sbjct: 838 AAEQRLDLEVRLQRALRLNELCLYFQPQIDISSNRIIGAEALVRWQDPAHGLISPAQFIP 897 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +IK + ++L R W+ Q +P I + +NI+ ++ + E + + Sbjct: 898 VAEETGLIKQLGEWVLLEACRQGKEWQ-QKGLPAINLAVNISPVQFRNSNILESVFNALK 956 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T Y S ++L +ES +M + + +L LRK GI L +DDFGT S L+YL P D Sbjct: 957 QTGYPASLLELELTESALMTHENEAVEILSALRKYGIRLAIDDFGTGYSSLAYLKRFPLD 1016 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + + I +I+ MA + ++A+ + E + L GCD Q Sbjct: 1017 VLKIDKSFVDDIPHKKDDMEIAAAIVAMAHTLRLKVLAEGVETEEQLTFLKEQGCDCYQG 1076 Query: 938 SHVASPLGFNSILKLLKER 956 ++ P+ + +LL+ + Sbjct: 1077 YLMSPPVPADQFEQLLRAQ 1095 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 5/205 (2%) Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390 + Y W ++ A L I GL++I ++ Q Sbjct: 348 VASYIPVRY--SGWHILVQQDRAEIYAPLHNLVYWITLVVFFAGLLVIFVVSLLWRQQQY 405 Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPI 449 + + + ++ +LG + M Sbjct: 406 TNQLELQRQTSEKDRLLKHFFELPLFGMAITHGQTGHWIRFNHQLSDLLGYSHSEMAEH- 464 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L ++ + E ++R D Q ++ + R + ++ +I Sbjct: 465 -TLLSLTANEYQEADIAAMYQMTQDLCDGYLCEKQLRRKDGQLIYVNVDTRCVRTADRNI 523 Query: 510 LRYIGIANDITEQKKSLEGILCNAF 534 I + DI+ QK++ + +A Sbjct: 524 AFIISVIEDISSQKENEAILRQSAT 548 >gi|77918534|ref|YP_356349.1| sensory box protein [Pelobacter carbinolicus DSM 2380] gi|77544617|gb|ABA88179.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter carbinolicus DSM 2380] Length = 1063 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 146/567 (25%), Positives = 256/567 (45%), Gaps = 17/567 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLP 454 I ++ A + S + D+ + G A + G Sbjct: 496 EIKKTQQQFHQAKWSIDASLTPMLMADLQGRLTYANQAALDLWGYAGEEEVLGKNIVEFQ 555 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D R I++ RG + E R + + + ++ + + + NG L + Sbjct: 556 ----EDPQRTRIIMEILKA--RGVWRGEGRGKQKNGNGFDVELQAQVVKDQNGGPLSILA 609 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 A DIT+++K+ I A+ D+LTG+PNR D + L + + V+++D+D Sbjct: 610 SAIDITDKRKTELQIKKLAYFDSLTGLPNRTLLKDHMELALGQARRLNKF-VAVLLLDLD 668 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K IND LG A GD ++ S+ R+ + D LAR G+ F ++L ++ Sbjct: 669 NFKHINDTLGHATGDLLIRSVAERLRTECRTCDTLARWGGDEFVLLLTDLDDIQNTTSAT 728 Query: 635 IAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + P E +I TASIG A + +LK A+ AMY AK G N Sbjct: 729 EKFMALLTERPFATSECDINTTASIGIALYPQDGQDPETLLKRADTAMYEAKKNGRNGYH 788 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + R ++ +L A++ E+ LVY P I L I G+EAL++W P+ G Sbjct: 789 FFSLQLAEQAERRHRMEINLRSALKEGEMQLVYQPQIDLGKVRITGMEALLRWQSPEEGT 848 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS + F+ +AEE +I + ++L++ R W+ P+ + +N+++K +L Sbjct: 849 ISPARFIPLAEETGLIYPLGEWVLQQACRQGAIWQKTEA-SPLCVAVNLSAKQFHQPDLA 907 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + ++ ++ +T SP ++L +ESV + N E + L L+K+G+ ++DDFGT S LS Sbjct: 908 KNIKKILRETGLSPHLLELEITESVFLENMEAAIEALTELKKLGVQFSIDDFGTGYSSLS 967 Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P D +K + AI+++ I MAK++ +IA+ + + L Sbjct: 968 YLKKLPIDRIKIAQEFVRDIDTDDGDKAIIKATIAMAKSLGMKLIAEGVENHQQLAFLLL 1027 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 GC +Q + A P+ + + Sbjct: 1028 HGCHAMQGYYFAKPMPAQEVPSFIHSE 1054 Score = 43.4 bits (101), Expect = 0.21, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 49/163 (30%), Gaps = 6/163 (3%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 + + + + + T+ ++ Q + + D + D + + Sbjct: 349 TIALLIAGVFLCLSCTLTLMIMRYKKTLQALRQSEGTLKAMLESIADPIHMVDRDLNILW 408 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 + G ++ G + D + +F + F + Sbjct: 409 ANDIAKQLFG---KNLVGQKCYAALHRSPTPCDPMCHAIKAFSDGHAHSSENLF--FDIN 463 Query: 490 NQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILC 531 ++ ++ ++S G + I+ D+TE KK+ + Sbjct: 464 DEERCFLVTANVASTDSQGQPSAVLTISRDVTEIKKTQQQFHQ 506 >gi|330812147|ref|YP_004356609.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380255|gb|AEA71605.1| putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1239 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 158/574 (27%), Positives = 270/574 (47%), Gaps = 12/574 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + + ++ + + + V D + I G + Sbjct: 656 MLTIARDITERHLMQEKLQQAATVFESTAEGVLITDTQQHISAVNRAFTEITGYSETEAL 715 Query: 447 G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G R +H D + + G Q E R + + + + I + N Sbjct: 716 GHTPRLLASGLH--DSAFYAAMWHQLTAE--GHWQGEISNRRKNGELYPSWLTISAVRNR 771 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + I ++ + DI+ K + + A D LTG+PNR F RL L+ + + Sbjct: 772 DRQITHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLLAALNGQQENGG-Q 830 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K IND LG VGD +L + R+ E L+ D +ARL G+ F I+L Sbjct: 831 GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAVRLREQLRDIDTVARLGGDEFIILLPGLQ 890 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A + P E E ++ASIG + + + ++KNA+ AMY +K Sbjct: 891 QPSDAEHIAQKLLNCFGAPFQAGEHEFFISASIGTSLYPQDGCDVATLVKNADAAMYRSK 950 Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G N VES+ + S+RV ++ +L A+E +EL L + P I L+D ++VG EALI+ Sbjct: 951 AKGRNRVESYTRDLTAQASERVALEHELRRAIERNELSLSFQPKISLIDNQLVGAEALIR 1010 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP +G++ F+ +AEE MI I ++LER R + W D + + +N+A Sbjct: 1011 WTHPTFGDVPPEHFIPLAEENGMILQIGDWVLERACRQLCEWNDAYDSLG-PLSVNLAGA 1069 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L L ++ L+ + P ++L +E+ +M E + +L +L+K+G+ L +DDF Sbjct: 1070 QLRQPNLLGRIEQLLRENQLEPGLLQLEITENFIMSQAEEALTVLHQLKKLGVQLAIDDF 1129 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D +K + S + G AI+R+II + ++++ T+IA+ + Sbjct: 1130 GTGYSSLSYLKRLPLDILKIDQSFVRGLPDDPHDAAIVRAIIALGRSMQFTVIAEGVETL 1189 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954 + LT GC+ IQ V+ PL + L+ Sbjct: 1190 AQQQFLTEEGCEQIQGYIVSLPLCADEFAATFLR 1223 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 7/157 (4%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTT 431 G++ +VI I + + Q + S V I W+ + + Sbjct: 271 VGILAVVIRINRRLSSEIARRVELEQELRSSEYHYRGLVESLSAIAWEARVSDFTYSYVS 330 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADN 490 P +LG W IH D +T D + R + ++RV AD Sbjct: 331 PHAEDLLGYPLSHWL-IPGFWRNIIHPADLIRAQTYCDHEVLAGRDHCI--DYRVITADG 387 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + W+ + + +G G+ DI+E K++ E Sbjct: 388 RCLWVRDIVSLI--EHGHEPVMRGLMIDISEAKRTEE 422 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 25/210 (11%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W + + L + N + G V ++ V++ Sbjct: 478 LNIWGIQGVGPALLQRLQAGSIRNLEMPFRRSNGQVFTGLISAEPFDLDTTPALVVVVRD 537 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGL----ASGS 444 + Q + + E+ + A S D + + + I G + Sbjct: 538 ISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLIEVNEGFSRITGFNSALSVDR 597 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + W+ N R + + + +R D Q + RP+ Sbjct: 598 STLDLGIWVNL-------NERKQMLDLLKRDGFVRDFSCHIRRNDGQIRLCEVSSRPL-- 648 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534 G+ + IA DITE+ E + A Sbjct: 649 PIGNEDCMLTIARDITERHLMQEKLQQAAT 678 >gi|91774883|ref|YP_544639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Methylobacillus flagellatus KT] gi|91708870|gb|ABE48798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Methylobacillus flagellatus KT] Length = 858 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 149/573 (26%), Positives = 264/573 (46%), Gaps = 16/573 (2%) Query: 398 QGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q + R LA S + + + + + P + + G + + G ++L Sbjct: 295 QQLRRRDARMRLATSVFASSSEGILIANPNDEVIGINPAVTALTGYSVQELLGRPVSFLA 354 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 SF +G Q E ++ + + I ++ +G + YI Sbjct: 355 ---PEQTVAESRRQASFSISEKGVWQGEALIKHKQGYTFPVALTITTVTGEDGRVECYIN 411 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 +DI+E+K + I A D LTG+PNR S L L VM++D+D Sbjct: 412 TFSDISERKANEARIHDLAHTDTLTGLPNRMSLYSGLEERLANVQ-----PIGVMILDLD 466 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K IND LG VGD +LV + RR+ + ++ARL G+ F I+L + + A Sbjct: 467 NFKIINDTLGHHVGDQLLVEVARRLVCCVGEQGMVARLGGDEFVIVLDCPQATQIVGRVA 526 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + +A P + E+ ++SIG +LKN + AMY AK G N+ + Sbjct: 527 KEVLQRLAQPYLIEGYELHSSSSIGIGVSPHDGSDPYSLLKNIDTAMYAAKSSGKNNFKF 586 Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ ++R+ ++ L A+ +E L Y P + L I+G+EAL++W+HP+WG + Sbjct: 587 FTEKMREQINERMQMENHLRQAILRNEFELHYQPQVDLGTGRIIGMEALVRWNHPEWGMV 646 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE ++ + ++L R I W Q + I +NI+++ L L Sbjct: 647 HPEKFIRVAEECNLVIPLGEWVLCEACRQISQWSRQGL-EAVCISVNISARQLKSRYLFT 705 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + L+ P ++L +ES VM +PE++ + L+ G++L +DDFGT S LSY Sbjct: 706 LIDNLMMTHQIKPGMLELEITESAVMDDPEQTIPRMKELKNKGVALAIDDFGTGYSSLSY 765 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P +K + S + AI + I +A+ + ++A+ + E ++ L Sbjct: 766 LKLLPLTRLKIDRSFVKDIETDPNDAAICAATIALARTLGLGLVAEGVETEAQLEYLRAQ 825 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 GCD Q + + PL N+I+ + V ++ Sbjct: 826 GCDSAQGYYFSKPLPANNIMAFVSRHQQEVMSS 858 >gi|302878855|ref|YP_003847419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581644|gb|ADL55655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 925 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 153/601 (25%), Positives = 276/601 (45%), Gaps = 20/601 (3%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 ++ L+ L++ LI F+ ++H + R + S + + D Sbjct: 326 VLGERLIPVSTLLLGLIFFSSLKHARTHVRAQ--LAETDLRIAATAFESEESMIITDSRG 383 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEF 483 + G S G + L DR F + + G+ Q E Sbjct: 384 IILKVNQVFTATTGYTSEEAVGKTPSLLKT----DRHSAEFYHEMWRQIKQ-TGKWQGEI 438 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 + + + + ++ I + + NG + Y+G D+TE+K + E I+ AF D LTG+PN Sbjct: 439 WDKRKNGEIYPKLLNIYAVKSKNGVVTHYVGSYTDLTERKMAEEKIISLAFYDTLTGLPN 498 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R+ LDRL L S ++ ID+DK+K +ND LG +GD +L + R+ + Sbjct: 499 RRLLLDRLNYALA-SGLRTGKNGALLFIDLDKFKTLNDTLGHDIGDLLLKQVAHRLKACV 557 Query: 604 KFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + D +AR+ G+ F ++L N + + + ++ MP LL E + SI Sbjct: 558 REIDTVARIGGDEFVVMLEDLNIESVEAAAQTEVIGEKILAALRMPYQLLTNEFHSSVSI 617 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716 G + ++++ + E LK A++AMY AK G N + F + ++ +L A+ Sbjct: 618 GISLFSNNGQSQDEPLKQADIAMYQAKKSGRNKLRFFDQRMQDTISSRANLEAELRKALA 677 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 N +L L Y + + I G E L++W HP G IS ++F+ +AEE +I I L++LE Sbjct: 678 NEQLQLHYQIQVDSAHQTI-GAEVLLRWIHPVNGIISPAQFVPVAEETGLILPIGLWVLE 736 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 + W+D + + IN++++ N ++++I + +P+ +KL +E + Sbjct: 737 TACAQLKKWQDNPATAQLILAINVSARQFHQNGFATEVRSVIERHDINPALLKLELTEGM 796 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--K 894 ++ N + + + L++ G+ +LDDFGT S L YL +P +K + S + Sbjct: 797 LLNNLDDTIATMRSLQEFGVQFSLDDFGTGYSSLQYLKRLPLAQLKIDQSFVRDLATGYN 856 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 AI+R+II MA ++ +IA+ + EI + L + C + Q P+ LL Sbjct: 857 DQAIVRTIIAMAHSLNLNVIAEGVETEIQRQILLKNQCSHFQGYLFGKPMPIEQFESLLS 916 Query: 955 E 955 Sbjct: 917 S 917 >gi|257095482|ref|YP_003169123.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048006|gb|ACV37194.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 922 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 153/681 (22%), Positives = 285/681 (41%), Gaps = 39/681 (5%) Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 + + L +V ++ + +A+ ++ A L+ Sbjct: 244 IWAVSTLPEFPEVGLHVVVGVSKQDLLAAANRNLVQALAILLAVWLLVFGG-------AW 296 Query: 361 RLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATGYFSQGIFSD-GER------QSLAV 411 L ++ L + + + + V++ +Q + + ER +A Sbjct: 297 VLARGVMDRGLAEEMRIRELNEQLEQRVLERTARLESANQELNREIAERSRAEAELRIAA 356 Query: 412 LG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + S + + D + G ++ + G R L D + + Sbjct: 357 IAFDSQEGMMVTDAHGVILRVNRAFVEETGYSAEDVVGRKRTMLTS-GREDAALDDAMWE 415 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + R G Q E R + + + + + I + G + Y+ DIT++K + + Sbjct: 416 TV--QRCGAWQGEVWDRRKNGEVYPVWLTISAVKGQGGLVTHYVATHIDITQRKAVEDQL 473 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 AF D LT +PNR+ LDRL +L S N + +M ID+D +K +ND G VGD Sbjct: 474 HKLAFYDPLTQLPNRRLLLDRLGHVLAGSTRSRN-QGAIMFIDLDNFKALNDTQGHDVGD 532 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS----LKIADFAIAMRKSIAMPI 645 +L + +R+ ++ D +ARL G+ F +++ ++ A + ++ P Sbjct: 533 RLLAEVAQRLKSSVRQCDTVARLGGDEFVVMVQDLAADSMVVAQVEAVAGKILAALDCPY 592 Query: 646 NL---------LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 L TASIG + + E+LK A+LAMY AK G N + F Sbjct: 593 RLVFDAELGRRNALNYHCTASIGITLFGAHSTNVDELLKQADLAMYQAKDSGRNAIRFFD 652 Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + ++ DL AVE + L Y P + + G EAL++W H + G + Sbjct: 653 PEMQAAITSRVALEADLREAVEAGQFQLYYQPQVVGESHRLTGAEALLRWHHSRRGMVPP 712 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 SEF+ +AEE +I + ++LE + +W Q M + + +N+++ + + + + Sbjct: 713 SEFIPLAEETGLILPLGQWVLETACAQLATWASQPEMAQLTVAVNVSAHQIRQTDFVDQV 772 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A+++ +P R+KL +ES+++ N E + L+ G+ +LDDFGT S LSYL Sbjct: 773 LAVLADAGANPQRLKLELTESLLVSNVEDIIAKMTLLKSRGVGFSLDDFGTGYSSLSYLK 832 Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + + AI + I+ +A+++ +IA+ + E L GC Sbjct: 833 RLPLDQLKIDQSFVNEVLTDANDAAIAKMIVALAESLGLAVIAEGVETEEQRNFLAESGC 892 Query: 933 DYIQDSHVASPLGFNSILKLL 953 Q + PL + + Sbjct: 893 HAYQGYLFSKPLPLAGFEQWI 913 >gi|217971350|ref|YP_002356101.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217496485|gb|ACK44678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS223] Length = 1074 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 149/593 (25%), Positives = 281/593 (47%), Gaps = 15/593 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 P L + + + + + Q R + S + + D Sbjct: 470 PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 529 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P I G + G + L H +F T + + G+ + E + Sbjct: 530 LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 585 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + Q + + I + N G I+++IG+ DI+++K+ + + A D LTG+PNR+ F Sbjct: 586 KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 645 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL + ++ D + +++ID+D++K INDV G A GD +L + +R+ + D Sbjct: 646 NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 704 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +AR+ G+ F +IL N L I A + +++ MP +L +REI ++AS G + Sbjct: 705 FIARIGGDEFVLILPRLTNELAIEHMATRIIETLGMPFDLNDREIQISASFGIGVYPEDG 764 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S + +N E AMY AK G N+ + F ++ R+ +++ L AV +E L Y Sbjct: 765 LDVSSLTRNTETAMYQAKDAGRNNFKYFTAGMNEAMFARMELEQRLRRAVAQNEFALHYQ 824 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ + + +EALI+W P +G I +F+ +AEE +I+ + ++L + D+ W Sbjct: 825 PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 884 Query: 786 RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + I + IN++ + ++ + +Q ++ +P + + +ES++MG+ Sbjct: 885 QKSG--LKINVAINVSGRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 942 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L +R +G + +DDFGT S LSYL P +K + S + + + +++ Sbjct: 943 HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 1002 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +I+ M +++E ++A+ I E L +GC + Q ++ PL F+ I LL Sbjct: 1003 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 1055 >gi|323488506|ref|ZP_08093750.1| sensor histidine kinase (sporulation kinase) [Planococcus donghaensis MPA1U2] gi|323397723|gb|EGA90525.1| sensor histidine kinase (sporulation kinase) [Planococcus donghaensis MPA1U2] Length = 924 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 131/565 (23%), Positives = 255/565 (45%), Gaps = 22/565 (3%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + + E L + + ++ +D+ +ILG +G + G I Sbjct: 376 ESLSREKE---LILNSVDEGIFGFDLDNKITFCNRAAESILGYRNGELIGQS---YKSIL 429 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + D T + L+ + + D + + + N ++ + Sbjct: 430 PANHDLIITSV---------SLEEDLKFVKKDGNDFSVEYVVSSIK-ENEQVIGEVVTFR 479 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT++K+ + I A+ D+LT +PNR D L + + + V+ +D+D++K Sbjct: 480 DITKRKQLEKEISHLAYYDHLTDLPNRILLEDYLKKKTEKAKVSGQ-KVAVLYLDLDRFK 538 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND G + GD +L ++ RI + ++R G+ F I+L +N+ ++ + + Sbjct: 539 IINDSFGHSYGDMLLKNVANRIRRSVPADAFVSRQGGDEFTIVLPGYDNNQEVLNLVDNL 598 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 S P +L E+ + SIG + + T+ ++KNA+ AMY +K + G + F+ Sbjct: 599 IASFTEPFSLKGNEVYIKTSIGISVFPEHGKTAEVLIKNADAAMYKSKEKSGTYHHFFKS 658 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 ++ L A+EN EL L Y P + I+G EAL++W+HP G +S Sbjct: 659 EMSDWSMESIYLENALYKALENDELSLHYQPQVDSETNRIIGAEALLRWNHPTRGMVSPI 718 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AEE +I I ++L + + Q + + +N++ + +++L ++ Sbjct: 719 EFIPVAEETGLIVPIGKWVLLNACKQLKKLHAQ-GNSNMSVSVNLSGRQFEEDDLIPMIE 777 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T +P + + +E+ + N + + ++ +GI + LDDFGT S L YL Sbjct: 778 NILVETGIAPEFLHIELTENQIFKNTHVTLEKMREIKALGIKIALDDFGTGYSSLGYLKN 837 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P DT+K + S M AI +II +A+N+ +IA+ + + L C Sbjct: 838 FPIDTLKIDRSFMFDILTDSDNAAITSTIITLAQNLNLNVIAEGVETAEQLDFLMAKNCF 897 Query: 934 YIQDSHVASPLGFNSILKLLKERFP 958 IQ + + PL ++ + + P Sbjct: 898 NIQGYYYSKPLPAEALENYIGQSTP 922 >gi|304412630|ref|ZP_07394234.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|307307241|ref|ZP_07586978.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] gi|304348974|gb|EFM13388.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|306910296|gb|EFN40728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] Length = 1074 Score = 541 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 149/593 (25%), Positives = 281/593 (47%), Gaps = 15/593 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 P L + + + + + Q R + S + + D Sbjct: 470 PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 529 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P I G + G + L H +F T + + G+ + E + Sbjct: 530 LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 585 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + Q + + I + N G I+++IG+ DI+++K+ + + A D LTG+PNR+ F Sbjct: 586 KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 645 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL + ++ D + +++ID+D++K INDV G A GD +L + +R+ + D Sbjct: 646 NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 704 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +AR+ G+ F +IL N L I A + +++ MP +L +REI ++AS G + Sbjct: 705 FIARIGGDEFVLILPRLTNELAIEHMATRIIETLGMPFDLNDREIQISASFGIGVYPEDG 764 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S + +N E AMY AK G N+ + F ++ R+ +++ L AV +E L Y Sbjct: 765 LDVSSLTRNTETAMYQAKDAGRNNFKYFTAGMNEAMFARMELEQRLRRAVAQNEFALHYQ 824 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ + + +EALI+W P +G I +F+ +AEE +I+ + ++L + D+ W Sbjct: 825 PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 884 Query: 786 RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + I + IN++ + ++ + +Q ++ +P + + +ES++MG+ Sbjct: 885 QKSG--LKINVAINVSGRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 942 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L +R +G + +DDFGT S LSYL P +K + S + + + +++ Sbjct: 943 HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 1002 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +I+ M +++E ++A+ I E L +GC + Q ++ PL F+ I LL Sbjct: 1003 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 1055 >gi|119944709|ref|YP_942389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] gi|119863313|gb|ABM02790.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 962 Score = 541 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 147/575 (25%), Positives = 253/575 (44%), Gaps = 12/575 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + + + SLAV S + + D+ + G + + Sbjct: 378 MVGTVQDITEQKRASDSLLKLSLAVEQSPNSIVITDLDGKIEYVNNMFIKVTGYSRDEVL 437 Query: 447 GP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G R F+ + R E R D + I P+ + Sbjct: 438 GQNPRILKSGKTPQ--TTFKEMWAHL--TRGDIWHGEIINRRKDKSIYIESATITPVKQA 493 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 +G I Y+ I DITE+KK+ A+ D LTG+PNR+ ++ L+++ ++ Sbjct: 494 DGKITNYVAIKEDITEKKKAEAYTENLAYFDQLTGLPNRRMLQAQVKYRLNMAQSNHQ-P 552 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 TVM +D+D +K IND LG VGD VL+ + +RI + ++ D ++RL G+ F ++ + Sbjct: 553 LTVMFLDLDNFKNINDSLGHTVGDQVLIKIAKRIKKAIREVDTVSRLGGDEFIMLFPN-T 611 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ A + + I+ + E+T+T SIG A + + +LKNAE AMY K Sbjct: 612 DANAAMHIATTLIQEISKASVVEHNELTITPSIGIAIYPNDGNDFKTLLKNAETAMYRVK 671 Query: 686 HRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 + N S + ++ L A++ +EL L Y P I + +I+G EAL++ Sbjct: 672 NDSRNGFHFVTPEMQLSASRNLQLENALRHALKRNELQLYYQPQISTSNGQIIGAEALLR 731 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP+ G IS +EF+ IAE I I ++L R +W D P+ I +N++ Sbjct: 732 WHHPELGMISPAEFIPIAESSGQIIEIGEWVLRTAIRQTKNWMDD-GFTPMIIAVNLSVV 790 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L + ++++ ++L +E+V M +PE ++ + GI +++DDF Sbjct: 791 QFRQKNLLTLITDILAEVQLPNEYLELELTEAVTMHDPESVINVMNTFHEQGIRMSIDDF 850 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +K + S + AI+ +II MA N+ IA+ + Sbjct: 851 GTGYSSLSYLKKFKVYKLKIDQSFIRDISNDPDDRAIVSAIIDMASNLGLQTIAEGVETA 910 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L GC +Q + + PL + Sbjct: 911 EQLAFLRLHGCHEVQGYYFSKPLPSVEFEQFRHNH 945 Score = 99.6 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 67/458 (14%), Positives = 142/458 (31%), Gaps = 50/458 (10%) Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI-- 232 L + + + T I +A + I I Y N+S+ L A+ + ++ Sbjct: 24 LLRSIEWHGSTHLHTFMEIIATLLALFVGILSFIHYHTNKSNQLFLLIAVGFFGTAFLDG 83 Query: 233 ---SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH----WNRWHAKVGYI 285 + F ++ L+ W + S + + +++ + Sbjct: 84 YHAIVTSLFFAEYFPSIPSSLIPWSWIASRLFLSIFLFWSYIHFRYMHSTTINERHLYTF 143 Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLA---SIVLYYTYFIIYHG---MKGYERAVL 339 + F +A + + Y K Sbjct: 144 ASLSTLTTFLFFAFVPLSNAYNTEFIFHRMAEWVPGLFFSLALCGYLVKGNWKKDIFEYW 203 Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 L + I+ I I + D + L+ + I++LIG + L Q Sbjct: 204 LTLSLIVSVISQIVFMSSSEVLFDIEFDAAHLLKKISYILVLIGLLKSIYKLVLYGVIQR 263 Query: 400 IFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + L +G + + T++ + + G+ S + W +H Sbjct: 264 AELIKQTYKLKRYQRIAGLGSYLLNFKTGIWTSSEILDELFGIDQ-SYNHSTEGWTLIVH 322 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +DR L + V + E+R+ D W+ + +++G ++ +G Sbjct: 323 PDDRIKMDDYLKNEVLAKGKPFDKEYRIVRQTDQSIRWLHGLGKLEFDNDGLPVKMVGTV 382 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK- 575 DITEQK++ D+L L LS + ++++ D+D Sbjct: 383 QDITEQKRAS---------DSL----------------LKLSLAVEQSPNSIVITDLDGK 417 Query: 576 YKKINDVL----GIAVGDDVLVSLTRRIGELLKFPDIL 609 + +N++ G + D+VL R + Sbjct: 418 IEYVNNMFIKVTGYSR-DEVLGQNPRILKSGKTPQTTF 454 >gi|226311855|ref|YP_002771749.1| signaling protein YkoW [Brevibacillus brevis NBRC 100599] gi|226094803|dbj|BAH43245.1| probable signaling protein YkoW [Brevibacillus brevis NBRC 100599] Length = 816 Score = 541 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 184/798 (23%), Positives = 325/798 (40%), Gaps = 39/798 (4%) Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVN----RSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 SF + +I VA+ + + + + A + + G L+ Sbjct: 11 SFLVILSYLIAVAASFSALNLAARVSKSKGKHQLLWLMFGATTMGLGIWSMHFVGMLALT 70 Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL------ 296 + + + + S I I LF N ++G A I+ + Sbjct: 71 LPIKVLYDMEYVILSVILAIFVSSIALFTITKRNLHARQLGIAGILMAAGISGMHYVGMA 130 Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356 M I I +A+ +++++ + + L + + M Sbjct: 131 AMMIEITYDTRIVILSIMIAATASAAALWLLFYFRRDQSKYAYLYKLGSSLIMGAAIAGM 190 Query: 357 AITKRLDNDIIQP--------------ALVGGLVLIVILIGFTVIQHVLATGYFSQG--- 399 T + +L +VL L+ + + SQ Sbjct: 191 HYTGMVAAHFYGTEQPTKQVGTQIEPESLAYIIVLATFLLIGITLFGLFINKRLSQKDTV 250 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHI 458 I + + D + P + I GL + +I Sbjct: 251 IQESESWYRSLYKNNEYGIISLDTGGCIIKMNPAVTKIGGLREEEFINQHVSKIRMHIVE 310 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 R+ + R +E + + + + P+ G+++ I D Sbjct: 311 EQRELTKDSFAQSFAPNRN--NFETTIFHPNGNRVELSVLNVPV-EIEGEVVGNHIIVKD 367 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE+ + E I A+ D LT +PNR+ F L ++ S+ D + VMVIDID++K Sbjct: 368 ITEENRVKEKIRYLAYHDELTDLPNRRKFNQVLHQSIEKSSQDSS-SFAVMVIDIDRFKM 426 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG + GD L ++ RI + K +AR+ G+ F I+ + + + A A + Sbjct: 427 INDSLGHSYGDIFLQGVSDRISKSAKGYHATIARMGGDEFTILCETGADGREAASLADKI 486 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +++ P L + E ++ASIG A + + +LK A+ AMY K +G N + Sbjct: 487 IEALKQPFTLKDSEFYISASIGTAIFPDHGTDAVALLKKADTAMYEVKKQGKNGHLFYTT 546 Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + I+ DL A+E EL + Y P ++G+EAL++W+HP G +S Sbjct: 547 DFDAQLLENIEIERDLRKAIERKELVVYYQPQFHSESNRMIGVEALVRWNHPTKGMLSPG 606 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ IAEE +I I ++L R + W D+ P I + +N++S L + ++ Sbjct: 607 VFIPIAEETGLIYEIGTWVLREACRQMKQWHDKGG-PLIPVSVNLSSHQFHQRNLVQYIK 665 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T +P ++L +ES++M +P S +L L KIG ++LDDFGT S LSYL Sbjct: 666 NILEETKLAPHFLELEITESMMM-DPAVSISILHELNKIGTRISLDDFGTGYSSLSYLKK 724 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +K + S +T E AI+ +II MAK+++ +IA+ I + + LT C Sbjct: 725 FPIHKLKIDRSFITDLSRNENDKAIVATIISMAKHLKLDVIAEGIETKDQLDILTENHCK 784 Query: 934 YIQDSHVASPLGFNSILK 951 IQ + + PL N + + Sbjct: 785 EIQGYYYSRPLSANEVEQ 802 >gi|330970857|gb|EGH70923.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 798 Score = 541 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 155/561 (27%), Positives = 265/561 (47%), Gaps = 14/561 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 E+ LA + + V + + I G + G R Sbjct: 224 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGQTPRLLAS 283 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D + + G Q E R + + + + I + N + + ++ Sbjct: 284 GQH--DSAFYAAMWHQLAAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVA 339 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI+ K++ + A D LTG+PNR F RL L S +L V+ +D+D Sbjct: 340 VFADISSLKQAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 398 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG VGD +L + R+ E L+ D +ARL G+ F ++L + A Sbjct: 399 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQTSDAQAIA 458 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P E E+ ++ SIG + + + ++KNA+ AMY +K +G N VES Sbjct: 459 NKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 518 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + S+R+ ++++L A+E ++L L Y P I L+ + G EALI+W+HP +G + Sbjct: 519 YTCDLSDQASERIALEQELRRALERNQLTLAYQPKIDLLTHTMAGAEALIRWNHPTFGEV 578 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AEE MI I ++LE+ R + WR P + +N+A L L E Sbjct: 579 PPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRK-TCQPFGPLSVNLAGAQLRQTNLLE 637 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ L++ P ++L +E+ +M + + +L +L+ +G+ L +DDFGT S LSY Sbjct: 638 RIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSY 697 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P D +K + S + G E AI+R+II + ++++ T+IA+ + + LT Sbjct: 698 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSE 757 Query: 931 GCDYIQDSHVASPLGFNSILK 951 GC+ IQ V+ PL Sbjct: 758 GCEQIQGYIVSLPLDAEEFRA 778 Score = 39.2 bits (90), Expect = 3.9, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 14/119 (11%) Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYE 482 + G+ + G L L E Sbjct: 8 DGHIMDANEAFVERTGIPLDEVIGKTPTELNLWAVPGIGPKVLLQL-----QTGDIHNLE 62 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK------KSLEGILCNAFQ 535 R + + ++ +P + I + I DIT+ K + E AF Sbjct: 63 IPFRRKNGETFSGLMSAQPF--EHSPIPAVLVIVRDITQLKLARQQLQLSEEKFAKAFH 119 >gi|16329450|ref|NP_440178.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] gi|1651932|dbj|BAA16858.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] Length = 840 Score = 541 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 150/569 (26%), Positives = 259/569 (45%), Gaps = 12/569 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 V+ + + S A S + D+ + P I G S + G Sbjct: 270 VMRDITERRKAEKQLKILSQACEQSPASIVITDVQGNITYVNPKFEEISGYKSAEVLGRN 329 Query: 450 RNWLPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + D + L S EF R + + +W I P+SN G Sbjct: 330 PRILKSGNKTQEDYELMWKTLAS-----GRNWHGEFHNRRKNGELYWERASISPISNQQG 384 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + Y+ + DIT++K+ E + A D+LTG+PNR DRL ++ + ++ Sbjct: 385 IVTHYVAVKEDITKEKQQAEALFHQAHYDHLTGLPNRILAKDRLQQAIESALRQKHI-FG 443 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 +M +D+D +KK+ND LG GD +LV ++ R+ L+ D +ARL G+ F IIL ++S Sbjct: 444 LMFLDLDNFKKVNDTLGHDAGDQLLVEVSERLQRALRQTDTVARLGGDEFLIILDQVSHS 503 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 K+ A + + + P+NL E V SIG + + +L+NA+ AMY AK Sbjct: 504 RKLMAIAQRLLRVMRQPVNLQGLEFFVHGSIGITVFPDDGFHADVLLRNADTAMYAAKLA 563 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N F ++ R+ I+ +L + E ++Y PI+ L +IVG EAL++W Sbjct: 564 GRNMFRFFTPHMNQAAQQRMAIESELRQGLSRQEFQILYQPIVSLESGQIVGAEALMRWH 623 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 + G + +F+ IAEE+ +I + ++L+ + W ++ +N++ + L Sbjct: 624 NRLLGTVPPDQFIPIAEEVGLIVELGEWLLDNVCCQAAHWHSALGEQTFWVSVNVSPRQL 683 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D+ +Q + + P ++L +E++++ L L + I+L+LDDFGT Sbjct: 684 KDSYFVAILQGFLQRYQVRPEWLELEITENLILEENGDLLKNLSDLEEENIALSLDDFGT 743 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL F+++K + S + ++R+II MA ++E +IA+ I Sbjct: 744 GYSSLNYLRKFNFNSLKIDRSFVELLPHDNNTVGLVRAIIAMAHHLELKVIAEGIETPEQ 803 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 L GCDY Q + + L Sbjct: 804 WNFLRLQGCDYGQGYLFSPAIAVEEWESL 832 Score = 43.0 bits (100), Expect = 0.28, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 9/151 (5%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH 446 + + T + ++A S D ++ + + GL + Sbjct: 142 EQIEKTARTQAALMQSEINFAVAFNQSPDPIFIYGRNSGCIMDVNQPFCQFFGLTKQELV 201 Query: 447 G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR---VRAADNQFHWMIIRIRPM 502 G + + ++ R +F L + + G +++E R V + Q M++ PM Sbjct: 202 GVSRQQFYFWVDEQQRQSFLRDL--LLWQKDGLVKFENREIEVYDQEKQVRTMLLSGEPM 259 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + + DITE++K+ + + + Sbjct: 260 --EFNRVDCLLFVMRDITERRKAEKQLKILS 288 >gi|297531107|ref|YP_003672382.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. C56-T3] gi|297254359|gb|ADI27805.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. C56-T3] Length = 947 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 146/664 (21%), Positives = 272/664 (40%), Gaps = 15/664 (2%) Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357 M YY R + + ++ ++ + + A Sbjct: 294 GMLLYYSAALGGYTRPLFDGVAAAFGQAALFPAVEVLVKDAYTAVRPAAFAAISLAETAA 353 Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417 + G ++ + + + +R + DI Sbjct: 354 SAESGLLSPWSSPPEG-----MMTLAQLMSTSSRDMERLHVRLQMSEQRYKSLFEHNTDI 408 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ D+ + P +LG + L YIH ND + Sbjct: 409 VYSTDLHGRLTSVNPAFEQVLGYKKEEILYTNS--LKYIHPNDIPRVTRYFYRALQGNIQ 466 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 E + A + ++ P+ +G + GI ++ITEQKK+ E I A+ D Sbjct: 467 TYNLE--IPAKSGERLLFQMKNIPII-VDGKKVGIYGIGHNITEQKKAEEKISYLAYYDI 523 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 T +PNR +++ + LD + + V +ID+D++K IND +G GDD+L L Sbjct: 524 DTNLPNRTKWMELFSEQLDKAKQKQR-KMAVALIDLDRFKWINDSVGHYAGDDILRQLVE 582 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 RI +L L R G++F ++ + + + A+ + + +A PI +E VTAS Sbjct: 583 RIRRVLPPSAELGRFHGDKFCLLFPLKTEAQAATEAALRIVREVARPIVYDGKEFFVTAS 642 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAV 715 +G A + +L++A++A+ AK GGN VE + ++ L A+ Sbjct: 643 VGLAMFPDDGEDEHALLRHADMAVNMAKKGGGNRVERYCAQMNEEAMHRLEMGGHLRRAI 702 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E +EL+L Y PI+ + + EALI+W HPK G + EF+ +AEE +I I ++L Sbjct: 703 EENELFLCYQPIVDVHTGVVKATEALIRWRHPKLGLVRPDEFIPLAEETGLIHEIGRWVL 762 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + R W++ + I +N++ + ++ + ++ SPS + L +E Sbjct: 763 KTACRQTKQWQEMTGNNRLAIFVNVSPVQFQHERFVDNVKQALKQSRLSPSCLHLELTEH 822 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894 ++ + + LRK+G+ + +DDFG+ S YL +P +K + + + Sbjct: 823 SMLRYLSSTMRTMEELRKLGVGIAVDDFGSGYSSFHYLKRLPATILKIDRAFIEQLHANA 882 Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI++++I MA + IA+ + + L + C Y Q PL +++ + Sbjct: 883 SDEAIVKAMITMAHGLGLETIAEGVETPEQLNRLRDLQCTYAQGYVFCPPLLAEEVMRYV 942 Query: 954 KERF 957 E+ Sbjct: 943 TEKQ 946 >gi|289627703|ref|ZP_06460657.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649022|ref|ZP_06480365.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330868476|gb|EGH03185.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 829 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 156/564 (27%), Positives = 269/564 (47%), Gaps = 15/564 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 E+ LA + + V D + I G + G R Sbjct: 255 ESRQMQEKLHLAATVFESTAEGVLITDTNQRINAVNRAFTEITGYSESEAIGQTPRLLAS 314 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D + ++ G Q E R + + + + I + N ++ Sbjct: 315 GQH--DSAFYASMWHQLAA--DGHWQGEISNRRKNGELYPSWLTINAVRNKANLTTHFVA 370 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI+ K + + A D LTG+PNR F RL + L S +L V+ +D+D Sbjct: 371 VFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSL-GAVLFLDLD 429 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG VGD +L + R+ E L+ D +ARL G+ F ++L A Sbjct: 430 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIA 489 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + P E E+ ++ SIG + + + ++KNA+ AMY +K +G N VES Sbjct: 490 NKLLACFNTPFEAGEHELFISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 549 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + S+R+ ++++L A++ ++L L Y P I L+ ++G EALI+W+HP +G++ Sbjct: 550 YTCDLTTQASERIALEQELRRALDRNQLSLAYQPKISLLTHTLIGAEALIRWNHPTFGDV 609 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AEE MI I ++LE+ + + WR P + +N+A L L E Sbjct: 610 PPEHFIPLAEENGMILQIGEWVLEQACQQMGKWRK-TCQPFGPVSVNLAGAQLRQTNLVE 668 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ L++ P ++L +E+ +M + + +L +L+K+G+ L +DDFGT S LSY Sbjct: 669 HIEQLLADNGLEPGCLQLEITENFIMSQTQEALAVLHKLKKLGVQLAIDDFGTGYSSLSY 728 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P D +K + S + G E AI+R+II + ++++ T+IA+ + + LTR Sbjct: 729 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSMQLTVIAEGVENSEQQQFLTRE 788 Query: 931 GCDYIQDSHVASPLGFNSI-LKLL 953 GC+ IQ ++ PL + L Sbjct: 789 GCEQIQGYIISLPLQPEEFSARFL 812 Score = 55.3 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 8/153 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 +++ + Q + E+ + A S D + + I G + Sbjct: 122 LVIVRDITQRKQAQQQLQLSEEKFAKAFHASPDGLAITRQQDGMLLEVNEGFCRITGYSE 181 Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + ++ + DR L R + R+R D + P Sbjct: 182 AYCLEHSTFDLGVWVDLGDRSRLIEQLKRHGSVR----DFRARLRNVDGSIRLCELSSHP 237 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + D L + IA DITE ++ E + A Sbjct: 238 IVIAGDDCL--LTIARDITESRQMQEKLHLAAT 268 >gi|144899934|emb|CAM76798.1| sensory box/GGDEF family protein [Magnetospirillum gryphiswaldense MSR-1] Length = 768 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 144/681 (21%), Positives = 294/681 (43%), Gaps = 15/681 (2%) Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341 I + ++ + + S + + A I + + + + + Sbjct: 93 WLLIAVTTVSLMGWVVWASIHIAPMAAIIPSSLYIGAAMLAAALVFWRRARRIPGNGYSL 152 Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 A + L + + ++ ++ I + + + + ++G Sbjct: 153 VALLFALWGLHKLDYPWLAAVPQAVPYGFMLTQVLSIGLGVALLIAADRESRARENEGRR 212 Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 L A+ + + ++ D + + G A G L Sbjct: 213 RSQALLHLQGEAMAATANAIFITDRAGRIEWCNKAFSQLTGWAETEAMGRGARRLLMGAE 272 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 DR L R + E +R D + + + P+ + G I Y+ + D Sbjct: 273 RDR-RMDEALK-----RGENWRGELNLRRRDGTLYVVDQNVTPIRDDRGRISHYVVVQED 326 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +TE++++ E I + D LT +PNR F +++ + + T+ + V+++D+D + Sbjct: 327 VTERRRAEERIRFLSNHDALTALPNRLLFREQIQRAIGRAKTERHG-LAVLILDLDDFSH 385 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 NDVLG GD +L+++T R+ + + LAR+ G+ FG +L++ + + + A ++ Sbjct: 386 YNDVLGHDGGDHLLLAITERLMSTARGIESLARVGGDEFGFLLLTTDGGESVVELAGSLT 445 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 K++ P ++ ++ V A+IG + + +LKNA++AMY A N F + Sbjct: 446 KAMRRPFDINGHDVQVGAAIGITLYPDDGADADTLLKNADMAMYRAIEDNPNGYRFFAPT 505 Query: 699 SFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R ++ DL A++ EL L Y PI+ I+ EAL++W+H G IS E Sbjct: 506 MDAELALRRRLESDLRKAIQRDELELHYQPIVDTQSRRIISFEALLRWNHADDGWISPVE 565 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE MI I ++L R + + W D+ +PP+ + +N+++ L ++ ++ Sbjct: 566 FIPMAEGNGMIGPIGEWVLRRACQQMRDW-DRMGIPPVPVAVNMSALQLKRQDVPMLVRK 624 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++ R++L +E+ VM + + ++ + + +G+ L +DDFGT S L+ L Sbjct: 625 MLTEAGVPSHRLELELTETTVMEDADAAQRIFADIAGLGVRLAVDDFGTGYSSLARLKRF 684 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + E AI R+II M + ++A+ + + L GCD Sbjct: 685 PVGKLKIDRSFVGDLAEDEGDAAIARAIISMGHAMGLKVVAEGVETPEQLAILAEAGCDA 744 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + + +LL+ Sbjct: 745 IQGFLFSRAVPADQAAELLRR 765 >gi|126651947|ref|ZP_01724139.1| sensor histidine kinase; possible sporulation kinase [Bacillus sp. B14905] gi|126591216|gb|EAZ85325.1| sensor histidine kinase; possible sporulation kinase [Bacillus sp. B14905] Length = 934 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 142/569 (24%), Positives = 273/569 (47%), Gaps = 18/569 (3%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMH 446 + + Q + + E L + +G+ ++ D+ R+ P A +LG + + Sbjct: 375 KELERVVAELQQLSREKE---LILNSAGEGIFGLDLDRNITFCNPAGALMLGYETDRELI 431 Query: 447 GP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + + D L++ + FR D+ + + Sbjct: 432 GQSVEIIMSGCEAEDNMTVSPFLNANFN----SYEVFFR---KDHSNFPVEYVTSLIKEG 484 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + ++ + DIT++K+ E I +A+ D+LT +PNR +DRLT L + + + Sbjct: 485 D-KVVGEVITFKDITQRKQLEEKIKYHAYFDSLTDLPNRVLLIDRLTQGLKYAKVNGE-K 542 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND LG + GD +L S+ +R+ + ++R G+ F I L + Sbjct: 543 LAVLYLDLDRFKLVNDSLGHSYGDLLLQSVAKRLSACVPEDATVSRQGGDEFTIYLPNIK 602 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 I + S + P NL++ EI + SIG + + + T+ ++KNA+ AMY +K Sbjct: 603 CENDILKVINCINASFSQPFNLIDNEIYIKTSIGISLFPKNGDTTETLIKNADTAMYKSK 662 Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G F + + + + ++ DL A+E EL + Y P I +I G+EAL++ Sbjct: 663 ETPGTSYHFFSEGMDTRTFESIKLENDLYKALERDELIIFYQPQINYKTNKIKGVEALLR 722 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+H + G I+ F+ +AEE +I I ++L+ + + W +Q P I + +N++ Sbjct: 723 WNHREHGMITPDRFIPLAEETGLIVPIGEWVLKEACKQLKEWHNQ-GYPLISMSVNLSVH 781 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 N L ++ ++ +T SP ++L +E++++ N E + + +L +G++L +DDF Sbjct: 782 QFEQNNLFSIIENVLYETDLSPEYLQLELTENLIVKNTEVTLKTMTQLNGLGVNLAIDDF 841 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 GT S L YL +P T+K + S + T+ AI +II +A+N++ +IA+ + + Sbjct: 842 GTGYSSLGYLKNLPISTLKIDKSFVQEMLTDDAAAITNTIITLAQNLKLEVIAEGVETKE 901 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951 L C +Q + P+ I+K Sbjct: 902 QADYLLEQNCHLMQGYFFSKPMKAGEIMK 930 >gi|144901030|emb|CAM77894.1| Two-component sensory box protein [Magnetospirillum gryphiswaldense MSR-1] Length = 828 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 148/571 (25%), Positives = 268/571 (46%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLP 454 + D R + V SGD ++ D + P I G + + G R Sbjct: 257 ERKRLEDNMRLAATVFENSGDGLFVTDAENRIIHVNPAFTRITGFTADEVLGRNPRLLAS 316 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D D F + + R G+ Q E R D + I + +++G + ++ Sbjct: 317 GRH--DHDFFIQLWTVLL--RDGKWQGEIWDRRKDGEMFAGWQNIAVVRDTDGKVQNFVA 372 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + +DIT +K+ E + A D LT +PNR F +RLT + ++ + NL ++ ID+D Sbjct: 373 VISDITTRKQVEERLSYAANHDPLTRLPNRTLFQERLTRAIARASRNHNL-VALLFIDLD 431 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K++ND +G GD +L + R+ ++ D +ARLSG+ F IIL + A Sbjct: 432 RFKQVNDTMGHLAGDMLLQQVAERLSSCIRQGDTVARLSGDEFTIILEDVQDPRDAAVVG 491 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + + P+ L E +++SIG + + + +LK A+ AMY AKH G N + Sbjct: 492 HKVLRLLQEPVALTGGEAHISSSIGVSLYPTDAGDPQTLLKLADAAMYRAKHLGRNSCQF 551 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 ++ +R+ ++ L AV+ + L Y PI + V +EAL++W HP+ G + Sbjct: 552 HSEAVNAEAFERLALENALRGAVDQGQFLLHYQPIFDVKSGRAVAVEALLRWRHPEVGVV 611 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 + ++F+ +AEE MI I ++ ++ R WRD + + IN++ + L +L E Sbjct: 612 APNQFLALAEETGMIVPIGRWVFDQACRQAKLWRDA-GHVDLRLHINLSPRQLRQPDLIE 670 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + A + + P + L E+ V+ L R +G+ L +D+FG+ S ++ Sbjct: 671 MVAAALEVSQLPPQALVLEVMETCVIDKAFDPSALFARFAALGVGLAIDEFGSGYSSFAF 730 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P +K S + +E I+ +I+ +A+ + T++A I + + LT Sbjct: 731 LRRLPVTILKVAQSFVRNLSSSEDESEIVTAIVALARGLHMTVVAPGIENKAQLDFLTGF 790 Query: 931 GCDYIQDSHVASPLGFNSILKLLK-ERFPLV 960 GCD +Q ++ PL + + L +R P Sbjct: 791 GCDKVQGFLLSKPLPGTEMTEFLDLKRSPAA 821 Score = 94.2 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 I + + + + + R +G V D V P +++G Sbjct: 123 RAIFYAIERSHAASALKRSEGRFRALFANAGLGVVLADAHGRMVEANPAFLSMVGYGEVE 182 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G + H +D T+ + R Q R A D + W + M Sbjct: 183 LRG--EKFRDITHPDDIGLNDTLRAEVLDGSRDGFQLTKRYIAKDGRIIWAKLTCTVMRE 240 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++G + + DITE+K+ + + A Sbjct: 241 ADGQQPFTVTVVEDITERKRLEDNMRLAAT 270 >gi|242238801|ref|YP_002986982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dickeya dadantii Ech703] gi|242130858|gb|ACS85160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dickeya dadantii Ech703] Length = 685 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 138/558 (24%), Positives = 253/558 (45%), Gaps = 14/558 (2%) Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN 459 E+Q +A S + ++ D + ++ P + + G ++G R + H Sbjct: 127 HEQQQIAAAVYDASHEAIFVTDADNNIISVNPAFSRLTGYHFDDVNGKNPRMFKSSRHP- 185 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 +F + + + +G E R + + + + + ++ G I+ ++G+ +DI Sbjct: 186 --PSFYAEMWHAL-HEKGLWIGEVWDRHKNGHDYLKELTVTVIRDAAGHIINHVGMFSDI 242 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T +KK E I A D +T +PNR F +L + NL +M+ID+D +K + Sbjct: 243 TLRKKQEELIWRQANYDAITDLPNRHLFQSKLEQAAQHARRTGNL-MALMLIDLDHFKAV 301 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISENNSLKIADFAIAMR 638 ND +G GD +L +++R+ + ++ D + ARL G+ F +I+ A A+ Sbjct: 302 NDSMGHRAGDMLLTRVSQRLIDSVQHADTIIARLGGDEFAVIISDLFQPHDCDALAKALL 361 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 ++++ P N+ + V+ASIG A + + + KNA+ AMY AK+ G N + Sbjct: 362 ENLSHPFNIDGENMFVSASIGIACFPTDSDNLEALFKNADQAMYAAKNAGRNGFSYYSPA 421 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ + DL A+ + + Y PI+ L I EAL++W HP G +S +E Sbjct: 422 LHDAARTRLRMTNDLRKAIREEQFEVYYQPIVALDTGHITKAEALVRWHHPTHGLVSPAE 481 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE-GMQ 815 F+ +AEE +I + ++ + + WR Q P + IN++ L + + Sbjct: 482 FIPLAEETGIIIPLGNWVARQAIAQLARWR-QFCDPRFQMTINLSPIQLRSQDFADMDWL 540 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + + S I + +E +++ R L R GI + +DDFGT S L+YL Sbjct: 541 RELDRHGLSGDAIAIEITEGLLLNAEPRVNRNLHMFRDAGIQIAIDDFGTGYSSLAYLRR 600 Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + + +I+ MA ++ ++A+ + L R+GCDY Sbjct: 601 FNIDYLKIDRSFIEDMDGVGHELCVAIVAMAHSLGLQVVAEGVETLQQSAMLKRIGCDYA 660 Query: 936 QDSHVASPLGFNSILKLL 953 Q + P I +LL Sbjct: 661 QGFLFSRPQSAADITQLL 678 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 5/132 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + +T P I G M R++ + + Sbjct: 12 FQAILDRCPVGIAVIDYSGNYLTVNPAYCNIYGYTQQEMLH--RSFTMVFPPEAQGSVLE 69 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 F+ G+L E+ V D + P + + R + + DI+E+KK+ Sbjct: 70 RHQRFLDE-GGKLGGEWTVTRRDGTLLTVWSESVPFAQAGHKADRLVYVL-DISERKKTH 127 Query: 527 EGILC-NAFQDN 537 E A D Sbjct: 128 EQQQIAAAVYDA 139 >gi|218289743|ref|ZP_03493951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicyclobacillus acidocaldarius LAA1] gi|218240200|gb|EED07384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicyclobacillus acidocaldarius LAA1] Length = 799 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 169/795 (21%), Positives = 327/795 (41%), Gaps = 61/795 (7%) Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 +T + L ++ GVA + I+ + ++ + ML W ++ LS + Sbjct: 36 ETRANRQLVWVVLGGVAMGIGIWS-MHFVAMLALMLPAQMTYNWGIVA--------LSLV 86 Query: 243 VNLPSGELLIW---RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299 + ++ RA S L+ ++ + + + G A F + Sbjct: 87 FAMAGPGAALYVVARATSPAKLAYGALLMGAGIVFMHYTGMAAMAVENGGFYYRAGPFVL 146 Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP---AWILIFIWFIGLWM 356 S I + +Y ++ + L + + M Sbjct: 147 S---------------VVIAIVASYVALWLSFRLATARGWLAQMAKVACALVMGIAIAGM 191 Query: 357 AITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 T + PA G L L+V + ++ +AT + + +D R Sbjct: 192 HYTGMWATVFVLPAHRRAAPMAYSGPLALVVAVFSAFILLAAIATVMLDRRLQADRRRFQ 251 Query: 409 LAVL-------GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 LA D ++ D V P + + + R + I DR Sbjct: 252 LADERFRSLYTHHSDAIFTLDTRGAIVDQNPRAKEL--VPEHELRKSARAFARMIDRRDR 309 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + EF +RA D H I + + +I +A D+T Sbjct: 310 PRVFEDYRRALSGSTT--NGEFLLRAGDKALHMSATHIPIVLDD--EIEGVFLVARDVTA 365 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K + E + AF D LT + NR+ F R+ + + ++ +D+D++K +ND Sbjct: 366 EKVAAERMNYLAFHDTLTHLANRRHFEARVDEFIHDAQ--PGDEMQILFVDLDRFKSVND 423 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG GD +L + R + E+ ++AR+ G+ F I L + A A+ + Sbjct: 424 TLGHEFGDKLLQEIARILKEVAGEDALVARMGGDEFTITLFH-QPMERAVAVADAILNRL 482 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 P+ + +R + +TAS+G AS+ +T +L++A+LAMY AK G + F + Sbjct: 483 RKPVRVEDRPLYMTASVGIASFPRHGVTRDMLLRHADLAMYTAKAEGRSTYRLFEERTAA 542 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + R+ ++++L A + + + Y P I + D+ +VG+EAL++W + SEF+ Sbjct: 543 NAKSRLELEQELRTAAQRGDFEIHYQPKIDMRDKSVVGVEALLRWRRAGGEYVPPSEFIP 602 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAEE +I I + L R +W D P+ + +N++ +L + + ++ ++ Sbjct: 603 IAEETGLIAPIGEWCLRAACRQAKAWLDAGR--PLRVAVNLSPYQVLTDGFLDVVREVLE 660 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T +++ +ES +M + ER+ L + +GI ++LDDFGT S LS L ++P + Sbjct: 661 ETGLPAQYLEIEVTESAMM-DAERAERFLAGCQALGIEVSLDDFGTGYSSLSRLTHLPLN 719 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 VK + + + A++ SI+ +A N+ +A+ + + + + +GCD Q Sbjct: 720 VVKIDRAFTQRAVDGGRARALVASIVDIAHNLGMRCVAEGVETKEQLSVIEALGCDEAQG 779 Query: 938 SHVASPLGFNSILKL 952 + A P+ + + L Sbjct: 780 FYFARPVPPSDLEAL 794 >gi|187921353|ref|YP_001890385.1| PAS/PAC/Chase sensor-containing diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans PsJN] gi|187719791|gb|ACD21014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Burkholderia phytofirmans PsJN] Length = 1037 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 149/587 (25%), Positives = 266/587 (45%), Gaps = 19/587 (3%) Query: 390 VLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + ++ + E R + S + + D + G + + G Sbjct: 457 RTSGRDITERKQVEAELRIAAVAFDSMEPMMITDASATILRVNSAFTECTGYTAEEIVGQ 516 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L +D F+ + + + G Q E R + + + + I + + NG Sbjct: 517 TPRVLRSGRHDD-AFFQEMWEEI--HSAGGWQGEVWDRRKNGEVYPKWLTISAVMSDNGT 573 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + Y+G +DITE+K + E I AF D LT +PNR LDRL + SA ++ + Sbjct: 574 VSHYVGTHHDITERKIAEERIKELAFFDALTRLPNRTLLLDRLRQAITASARNE-ACGAL 632 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN--- 625 + ID+D +K +ND LG GD +L + RR+ + + D +AR+ G+ F ++L + + Sbjct: 633 LFIDLDHFKTLNDTLGHDKGDLLLQQVARRLADSVLESDTVARVGGDEFVVVLGNLHKNR 692 Query: 626 --NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + + + P +L + E +ASIG + + + E+LK A+LAMY Sbjct: 693 QEAANQTEAVGERILAVLGSPYHLGKIEYRTSASIGATVFRGHQASIDELLKQADLAMYK 752 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 +K RG N V F ++ L A+E+++ L Y +++ + G EAL Sbjct: 753 SKERGRNAVRFFDPDMQTVVVQRAALEAGLRNAIEDNQFLLHY--QAQVVGTRVTGAEAL 810 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G + +EF+ +AEE +I A+ ++LE + W + +M + I +N++ Sbjct: 811 VRWQHPQRGIVPPAEFIPLAEETGLIVALGSWVLEAACAQLARWAARPDMAHLTIAVNVS 870 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + +I +T P R+KL +ESV++ N + + L+ GI LD Sbjct: 871 VQQFRKADFVDNVLTIIGRTGARPDRLKLELTESVLVDNVQDIIEKMSALKAKGIVFALD 930 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFG S LSYL +P D +K + S + I R+I+ +A+++ +IA+ + Sbjct: 931 DFGIGYSSLSYLKRLPLDQLKIDRSFVRDVLVDSNDAVIARTIVALARSLGLGVIAEGVE 990 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE---RFPLVKNT 963 E L GC Q + PL LL R + + T Sbjct: 991 TEAQRDFLAAAGCYAYQGYYFCRPLPIEDFEALLNNVETRQCVAERT 1037 Score = 82.3 bits (202), Expect = 4e-13, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 44/142 (30%), Gaps = 3/142 (2%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 ++ + + E+ + + +W W + +G Sbjct: 338 ASAMTKELRENEEKFRAIADCTVNWEIW-WGTDGKPRWINSAVEAYIGYTVDECMALPDF 396 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 I+ D + RG EFR D W+ P+++S G+ + Sbjct: 397 AGTVIYPADIPRVAPEFQKALQGLRGD-DLEFRCVRKDGSLMWLSASWVPITDSKGEFIG 455 Query: 512 YIGIANDITEQKKSLEGILCNA 533 + DITE+K+ + A Sbjct: 456 FRTSGRDITERKQVEAELRIAA 477 >gi|118581136|ref|YP_902386.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118503846|gb|ABL00329.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter propionicus DSM 2379] Length = 858 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 142/572 (24%), Positives = 264/572 (46%), Gaps = 11/572 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + R + I + + + G ++G G Sbjct: 132 LRKHRQAELSLCESESRFRRILQEIPSIAFKGYGVDGTVRYWNLASELFYGYSAGEAIG- 190 Query: 449 IRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 RN L + R + + R E + D ++ + G Sbjct: 191 -RNLLDLVIPEGMRAEEKRRMLRMAETGRADPPSEQCLLRRDGSRITVL-SCHAVVRRPG 248 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + G+ DI+E+K + E + A D LTG+ NR F DRL L + + Sbjct: 249 EAPELYGLDIDISERKINEEQLEYLATHDELTGLANRALFHDRLEQSLHYAKRSGRI-VA 307 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+++D+D++K IND LG + GD +L ++ +R+ +++ D +ARL G+ F ++L Sbjct: 308 VLLLDLDRFKIINDSLGHSFGDRLLSAVAQRLDRVVRDTDTVARLGGDEFVLLLAEVTEP 367 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + +A+P + REI ++AS+G + + S +++NA++AMY AK Sbjct: 368 DDVGLLASRILHELAVPHRIEGREIVMSASLGISLYPKDSGDGSTLIRNADIAMYRAKQE 427 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG + ++ + + I+ L LA+E E L Y P + L I G EALI+W Sbjct: 428 GGGVFSFYAPEMNQRAMETMEIESALRLALERGEFTLYYQPKVDLASGRISGCEALIRWL 487 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G ++ ++F+ +AEE +I I ++L+ R + +W+ + +P + +N++++ Sbjct: 488 HPRRGVVAPADFIPLAEETGLIVPIGTWVLKEACRQVRAWQAE-GVPIANVAVNLSARQF 546 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 +L ++ ++ +T P ++L +ES+VM + + ++ L IG+ L+LDDFGT Sbjct: 547 RTGDLPGLVREVLGETGLDPHLLELEMTESMVMADHAQVVAVMEELTAIGVRLSLDDFGT 606 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S ++L + P + +K + S + I SII MA + IA+ + E Sbjct: 607 GYSSFAHLSHFPINHLKIDRSFIKQIVTDPNSATIATSIIAMAHRMRLKAIAEGVETEAQ 666 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L + GCD IQ ++ PL + L++ Sbjct: 667 LAYLRKQGCDEIQGYLLSRPLPASEYAALVRR 698 >gi|152991498|ref|YP_001357220.1| hypothetical protein NIS_1758 [Nitratiruptor sp. SB155-2] gi|151423359|dbj|BAF70863.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 793 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 157/568 (27%), Positives = 270/568 (47%), Gaps = 12/568 (2%) Query: 395 YFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ER ++ + S D V D ++ V + G + G Sbjct: 230 RLIEAQKQAIERATVMKNVIQNSDDAVLITDHAKNIVDCNRAFEKMSGYTKEEIIGKKPE 289 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDIL 510 + D ++ + + + ++G E + D + + I + + I Sbjct: 290 EFLKSGLQDSSFYQKMWKNIL--KKGEWSGEIVDKRKDGSLFYALQSIFAIKDPLTNKIT 347 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 Y I DITE K E I AF D LT + NR SFL L + L ++ ++ Sbjct: 348 HYAAITKDITELAKKQETIQKLAFYDPLTKLANRVSFLQTLDEFIALGKR-ESFPFALLF 406 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K+IND LG GD +L + +R+ LL+ DI ARL G+ F ++ ++ K Sbjct: 407 IDLDNFKEINDTLGHDTGDKLLQAFVKRLKSLLREEDIAARLGGDEFVVLAPGISSPSKA 466 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGG 689 + A ++ + P+ + +R ITV SIG A + ++E+LK A++AMY AK + Sbjct: 467 LELACRLQNAFQQPLMVDDRPITVQMSIGIALFPQDAKNANELLKAADIAMYKAKEKKNR 526 Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + ++V +K++L A+E +EL L P I + +++ G EALI+W+HP Sbjct: 527 CVLFQENMQQEALEKVTLKQELKKAIEKNELMLYLQPKISVRTKKVEGFEALIRWNHPTR 586 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G I S+F+ +AEE +I + ++ + + R + + P I INI+++ ++ Sbjct: 587 GFIPPSKFIPLAEESALIIPLTEWIFQEVDRLLDQLQQNGIESP--IAINISARHFATDK 644 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + I K I+L +ES VM + ++ L +L GI + LDDFGT S Sbjct: 645 LIEQITTNIKKEYIQKGLIELEVTESAVMEDINKAMHYLQKLHSFGIKVALDDFGTGHSS 704 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P DT+K + + + K AI+ S I MA + +A+ + + + L Sbjct: 705 LQYLKKLPIDTIKIDKTFIDHIINDNKDQAIVESTIEMADKLGMDTVAEGVETKEQAQFL 764 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++G DYIQ + A P+ F +L+ L++ Sbjct: 765 EKIGIDYIQGYYYAKPMPFEEMLEFLQK 792 >gi|152988008|ref|YP_001350574.1| motility regulator [Pseudomonas aeruginosa PA7] gi|150963166|gb|ABR85191.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 1410 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 148/575 (25%), Positives = 266/575 (46%), Gaps = 15/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 V + + + S + D V + + G + + Sbjct: 833 VARDISQQRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQ 892 Query: 450 RNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L DR + G + E + + + + I + + GD Sbjct: 893 PRLLT----ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAIRDEEGD 948 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 ++ ++ +DI+E+K S I A+ D LT +PNR F DRL T L + + + Sbjct: 949 LVSFVCFFSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVL 1007 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 M +D+D++K IND LG A GD +L + R+ + D +AR+ G+ F ++L S+ + Sbjct: 1008 MFLDLDRFKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDRE 1067 Query: 629 ----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A + +A P L RE VTASIG A S ++KNA+ AMYHA Sbjct: 1068 IALKRAIQVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHA 1127 Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N+ + ++ +++ +R+ ++ DL A+E E L Y P + G EAL+ Sbjct: 1128 KEMGKNNFQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALL 1187 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G + SEF+ + EE+ ++ + ++L + + SW P + +N+++ Sbjct: 1188 RWQHPRRGLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSA 1246 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + D +L E + A++ +T P+ ++L +ES++M + + +L L+++G+++ +DD Sbjct: 1247 RQFADGQLGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDD 1306 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL P D +K + S + G E+ I R+II MA ++ +IA+ + Sbjct: 1307 FGTGYSSLNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVES 1366 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + L GCD +Q P+ L Sbjct: 1367 QAQLDFLREHGCDEVQGYLFGRPMPAEQFGMLYAS 1401 Score = 75.8 bits (185), Expect = 4e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444 + V + + + S AV D ++ D+ RV + + LG Sbjct: 560 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLNARRVIFSNHHLGQQLGYDQEE 619 Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + N W +H +D++ + I + V L + R R D ++HW IR + Sbjct: 620 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 679 Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533 + +G + R IG+A DIT +++ A Sbjct: 680 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 718 Score = 65.0 bits (157), Expect = 6e-08, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + T + + +G R + D+++ D + +P + + G + Sbjct: 691 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNANYVSPSVQHVFGYSPE 750 Query: 444 SM--------------HGPIRNWLPYI-H-INDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 G + L + H I DR+ + + + Sbjct: 751 WALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDREKLAE-----LRENPAQHLFALDCLR 805 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 AD + + +R+ M + + +G+A DI++Q+++ + A Sbjct: 806 ADGRKIPIELRLVLMWDEHDRFEGLLGVARDISQQRRAERELRMAAT 852 Score = 41.5 bits (96), Expect = 0.64, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 10/163 (6%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425 GG +LI +L+ + +L QG+ + + A+ + V Sbjct: 249 GGELLIFLLLVGVTVLTLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 308 Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 P + G++S + LP + + ++ R++ E R Sbjct: 309 RLSYLNPQAEQLFGISSAQARQHHLLGLLPDLEPGWLSDAAGDGETRSELLPLRVRGEPR 368 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDITEQKKS 525 V IL + + D+TE++ + Sbjct: 369 VFTLSRHPLASHTEAAQAWTLRERILQGGQVWVLRDVTEEQHA 411 >gi|89255347|ref|NP_659900.2| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|89213301|gb|AAM54913.2| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 932 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 270/570 (47%), Gaps = 7/570 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + R + D+VW D+ + ++G A Sbjct: 330 LVLSRDITERKHAEGTTIEARARLLSVLQTIPDMVWLKDVTGKYLLCNHAFEELVGKAEA 389 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G FR + + R + E D + + R P+ Sbjct: 390 EIVGKTDY--DLFTPELAQFFRDKDEEAMQAGRILINEERFTAHEDGRSTLLETRKVPVF 447 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G ++ +G+A DITE S + I AF D+LTG+PNR F +RL ++ +A+ Sbjct: 448 -TGGKLMGILGVARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQ 506 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R VM+ID+D +K IND +G VGD++L + R+ + ++ D +ARL G+ F ++L + Sbjct: 507 -RAGVMLIDMDHFKAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPN 565 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ +A A M + L +REI V+ SIG + + + +++K A+ AMY Sbjct: 566 VQDNDDLAQIASRMLAAFGERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYL 625 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G ++ + R+ ++ DL LA+++ +L L Y P + L + +++G EAL Sbjct: 626 AKRSGRSNFRFYSKDLTIGAEKRLALESDLRLALKHEQLELHYQPKVLLDNGKVIGSEAL 685 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HPK G I EF+ +AEE +I + ++L PP I IN++ Sbjct: 686 LRWHHPKMGMIPPGEFIGVAEETGLIIDLGRWVLHEACCTAAVMNADGL-PPHKIAINLS 744 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 K L + + ++ +T I++ +ES+++ N E L +L GIS+ +D Sbjct: 745 PKQFQCPRLSQTVADVLQETGCRAEWIEVEITESLLLHNCEGVSTTLSQLHASGISIAID 804 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 DFGT S LSYL P DT+K + S + S ++ ++++I+ +A+ + ++A+ + Sbjct: 805 DFGTGYSSLSYLANFPIDTLKIDRSFINRSDKRSRELVKAILSIARCLGQNVVAEGVETV 864 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951 K L GC Q + + P+ + +L Sbjct: 865 DQEKFLAESGCAVAQGFYYSKPIPKSELLA 894 Score = 64.2 bits (155), Expect = 1e-07, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 3/143 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + E + D++++ + + IL Sbjct: 204 VGAMLDITERKRAEHDLKEALEFAEGIIAAIPDVLFEVNADGRYLQVWARNQEILAQRKE 263 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + + + D L+ R+ + + W + + Sbjct: 264 VLLGKL--VRDVLPPDQADIAMLALEEA-DETGASYGRCVRIALPNGESRWFELSVARRP 320 Query: 504 NSNGDILRYIGIANDITEQKKSL 526 +SN + ++ ++ DITE+K + Sbjct: 321 SSNHSTVTFLVLSRDITERKHAE 343 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 11/129 (8%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 ++ + V+ + + + G + G + G + Sbjct: 102 AVVLDAIPLPVFFKNRDGIHLGCNRAFESFSGRSKGDIIGK--TVFDLV-PAPIAETYAA 158 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 LD + G QYE + + +++ +++ G+ + +G DITE+K+ Sbjct: 159 LDEALFANGGVQQYEAKATTENGGVVDLLLSKTAITDIAGNRIGLVGAMLDITERKR--- 215 Query: 528 GILCNAFQD 536 A D Sbjct: 216 -----AEHD 219 >gi|91775155|ref|YP_544911.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] gi|91709142|gb|ABE49070.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Methylobacillus flagellatus KT] Length = 1070 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 146/584 (25%), Positives = 283/584 (48%), Gaps = 18/584 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F V+ + + + + + + + D R+ + + G Sbjct: 481 FGVMLDITDRKAAEESLNLSKQ----VFDNTSEAILIADRDRNILEVNQAYLDMTGYGRE 536 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G L D L + + G+ E + +++ + I + Sbjct: 537 DCVGTYLALL------DEPAGGGQLIGNLVQQHGKWMGELLAQKRSGEYYPAWVSISTVH 590 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +++G + Y+ + DI+++K++ E + A D LTG+PNR +R+ + + Sbjct: 591 DNHGSLQNYVVVLTDISQRKQAEERLQFLATHDGLTGLPNRTLLQERMELAVLRAQRYQQ 650 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V+ ID+D++K IND LG GD +L + R+GE L+ D +AR G+ F +++ Sbjct: 651 C-VGVLFIDLDRFKIINDTLGHQAGDVLLQEVAGRLGECLRQTDTIARQGGDEFVVLVED 709 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + ++A P L+++E+ ++ASIG + + + S +LKNA++AMY Sbjct: 710 FIEQQYLVNVARKIMHALAQPFILMQQELYISASIGISVYPDDGVDISSLLKNADMAMYR 769 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + + R+ ++ L A+E +E L+Y + L ++ I+G EAL Sbjct: 770 AKDDGKNTFHFYSADGNANSVSRLTLENSLRRALERNEFSLLYQAKLDLAEQNIIGAEAL 829 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W + G +S +F+ +AEE MI I ++L++ RD W++ A PI + +NI+ Sbjct: 830 IRWHSAELGMVSPQDFIPVAEETGMIIEIGEWVLQQACRDACHWQEVAGR-PIRVGVNIS 888 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ ++ L + + + ++ +P+ ++L +ES++M N ER+ +L R +G + +D Sbjct: 889 ARQFREDSLYQAISNALEESGLTPNCLELEITESMIMQNAERASQMLQHFRNLGSYVLID 948 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L YL + P D++K + S + +AI ++II MA +++ ++A+ + Sbjct: 949 DFGTGYSSLGYLKHFPIDSLKIDRSFVRDIPQDSDDMAITQAIIAMAHSLKINVVAEGVE 1008 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + ++ L GCD +Q + PL + LL RF + Sbjct: 1009 TQAQLEFLRGQGCDQLQGYIFSRPLVVEDFVGLL--RFDTARRA 1050 Score = 95.0 bits (235), Expect = 6e-17, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 1/144 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +I + + + + V +VW + + ++LG Sbjct: 353 VVLIIDISSRKQAEEALLQSRAEYRKLVESVKAVVWRATPEAAFTFVSQEAESLLGYPVR 412 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 W+ +H +DR + + E+R+RAAD + W+ +R + Sbjct: 413 EWTSNTSFWVDKLHPDDRPWVVDFCARETRQLKDHV-LEYRMRAADGRTVWLQDIVRVIP 471 Query: 504 NSNGDILRYIGIANDITEQKKSLE 527 + G G+ DIT++K + E Sbjct: 472 DRFGKPQELFGVMLDITDRKAAEE 495 Score = 81.2 bits (199), Expect = 8e-13, Method: Composition-based stats. Identities = 46/351 (13%), Positives = 99/351 (28%), Gaps = 40/351 (11%) Query: 200 SLLAIFLTIFYMV-------NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPS----- 247 + L +L ++ R M + L + L +L + Sbjct: 34 AALGYYLLKRFIRFEPEMTRLRDLMGMVLVGAVISPLLSATSGALGL-RLFGVVPDSDLH 92 Query: 248 -GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 L W + + + I + RW S + + L ++F + Sbjct: 93 VTWLQWWMGDALGIILLTPAILACFHYEPIRWTRAKLLEAVSLASMLLGLCFLAFNDLLS 152 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 A + + ++ +G A LLI L +I Sbjct: 153 QAGELEAKAFLVFPLVIWAVLSFHQRGAAAASLLIVMTALWGGGG------YHGFFSMEI 206 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL------AVLGS----GD 416 AL + ++ + V G ER A+ + G+ Sbjct: 207 SNAALFNYWMFALVTVSIGV-----GLSGLHVGRLQADERLRQQLGLYNALSNAQSDAGE 261 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 V + + + I G + + ++L IH +DR+ + Sbjct: 262 GVMVIE-DGKIIYANEAVRKIGGYDARDIS-MGSSFLSLIHPSDRERVAQHYKQRIRGEY 319 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 +YE + + + + + + R + + DI+ +K++ E Sbjct: 320 TPSRYEALAISKLGKPIPIEVAAANYRDGS---ERIVVLIIDISSRKQAEE 367 >gi|261418942|ref|YP_003252624.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC61] gi|319765760|ref|YP_004131261.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC52] gi|261375399|gb|ACX78142.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC61] gi|317110626|gb|ADU93118.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC52] Length = 947 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 144/664 (21%), Positives = 270/664 (40%), Gaps = 15/664 (2%) Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357 M YY + R + + ++ ++ + + A Sbjct: 294 GMLLYYSAALSGYTRPLFDGVAAAFGQAALFPAVEVLVKDAYTAVRPAAFAAISLAETAA 353 Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417 + G ++ + + + +R + DI Sbjct: 354 SAESGLLSPWSSPPEG-----MMTLAQLMSTSSRDMERLHVRLQMSEQRYKSLFEHNTDI 408 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ D+ + P +LG + L YIH ND + Sbjct: 409 VYSTDLHGRLTSVNPAFEQVLGYTKEEILYTNS--LKYIHPNDIPRVTRYFYRALRGNIQ 466 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 E + + ++ P+ +G + GI +ITEQKK+ E I A+ D Sbjct: 467 TYNLE--IPTKSGERLLFQMKNIPII-VDGKKVGIYGIGRNITEQKKAEEKISYLAYYDI 523 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 T +PNR +++ + LD + + V +ID+D++K IND +G GDD+L L Sbjct: 524 DTNLPNRTKWMELFSEQLDKAKQKRR-KMAVALIDLDRFKWINDSVGHYAGDDILRQLVE 582 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 RI +L L R G++F ++ + + + A+ + + +A PI +E VTAS Sbjct: 583 RIRRVLPPSAELGRFHGDKFCLLFPLKTEAQAATEAALRIVREVARPIVYEGKEFFVTAS 642 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAV 715 +G A + +L++A++A+ AK GGN VE + ++ L A+ Sbjct: 643 VGLAMFPDDGEDEHALLRHADMAVNMAKKGGGNRVERYCAQMNEEAMHRLEMGGHLRRAI 702 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E +EL+L Y PI+ + + EALI+W HPK G + EF+ +AEE +I I ++L Sbjct: 703 EENELFLCYQPIVDVHTGAVKATEALIRWRHPKLGLVRPDEFIPLAEETGLIHEIGRWVL 762 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + R W++ + I +N++ + ++ + ++ SPS + L +E Sbjct: 763 KTACRQTKQWQEITGNNRLAIFVNVSPVQFQHERFVDNVKQALKQSRLSPSCLHLELTEH 822 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894 ++ + + LRK+G+ + +DDFG+ S YL +P +K + + + Sbjct: 823 SMLRYLSSTMRTMDELRKLGVGIAVDDFGSGYSSFHYLKRLPATILKIDRAFIEQLHANA 882 Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI++++I M + IA+ + + L + C Y Q PL +++ + Sbjct: 883 SDEAIVKAMITMGHGLGLETIAEGVETPEQLNRLRDLQCTYAQGYVFCPPLLAEEVMRYV 942 Query: 954 KERF 957 E+ Sbjct: 943 TEKQ 946 >gi|312794722|ref|YP_004027645.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181862|gb|ADQ42032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1016 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 143/567 (25%), Positives = 268/567 (47%), Gaps = 11/567 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + E+ + D +W+ D + + + + + WL + H Sbjct: 448 ALEEEKEKYKFLIENGSDCIWEIDFKEKNIEFYGRLKDLFDIKAVKSKNDFSAWLDFFHP 507 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +DR L + L++E R+R + +HWM ++ N G + I + D Sbjct: 508 DDRSTVFKKLQDAILLHEENLEFEARIRDKNGNWHWMSAHVQIFYNEEGKPEKIIAVNID 567 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 T +K+ + I A+ D LT +PNR+ F + L + + ++ + V++IDID +K Sbjct: 568 WTAKKEYEQKIEYIAYYDALTSLPNRKLFEEALEDFIKKA-EEEKAQGAVILIDIDNFKD 626 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADFAI 635 IND+ G GD+ L ++ +++ E LK AR+ G+ F ++L ++ + Sbjct: 627 INDLYGHEAGDEYLKAVGQKVLEYLKNLNLNTFFARVGGDEFAVVLHGLAKKEEVIEVCT 686 Query: 636 AMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + I + ER + +AS+G + + + E+ +N ++A+ AK G N + Sbjct: 687 QLLSIFEREIYIQKLERHLFASASMGISFYPDDGRSVKEIFRNVDMALSSAKENGKNDFQ 746 Query: 694 SF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + ++ I++ L A+E + L Y P+I L D EI +EAL++W P+ G Sbjct: 747 IFLPFMLMKNLKKIEIEKGLKKAIETDQFELYYQPVINLKDMEIHSVEALLRWISPEKGM 806 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE+ +I I ++E+ D+ W + + + IN++++ Sbjct: 807 ISPLEFIPVAEEIGLIIKIGEMVIEKAFSDLKEWEKKGIDY-LHMAINLSARQFKIKFFE 865 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +Q LI + P +I +E+ + N + S +L L ++GI +DDFGT S L Sbjct: 866 NMVQKLIERYSIDPKKISFEITETGAVENFDVSLKILSFLCQMGIKFLIDDFGTGYSSLV 925 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P VK + S ++ +++ AI+ II MA ++ ++A+ + + ++ L Sbjct: 926 YLKRLPIGGVKIDRSFISELEVSKENKAIVEGIILMAHKLDLKVVAEGVETKRQLEILKE 985 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD+ Q + PL + KLL R Sbjct: 986 VGCDFAQGYLFSKPLPKTEVEKLLIAR 1012 Score = 68.1 bits (165), Expect = 8e-09, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 4/165 (2%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 N I + + L++I+ + G + + L + IV ++ Sbjct: 258 NRQIVISTLYLLLIILFAASVAIFVMARINRRLEHGKQTYEKYAQLLAENANAIVLTLNL 317 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYE 482 + + + G S + G W+ I + R+ + + +E Sbjct: 318 NGEIIYFNKFAQELTGYKSEEVVGKK--WVDIFIPPHRREYIENLFKRIAEEKILN-NHE 374 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + W++ + + + I DIT+ K + + Sbjct: 375 NEIVTKNGDIKWILWNNTLIESPYLNEPMIISTGLDITQIKTTQQ 419 >gi|330985811|gb|EGH83914.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 829 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 155/563 (27%), Positives = 267/563 (47%), Gaps = 13/563 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E+ LA + + V D + I G + G L Sbjct: 255 ESRQMQEKLHLAATVFESTAEGVLITDTNQRINAVNRAFTEITGYSESEAIGQTPRLLAS 314 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + F + + G Q E R + + + + I + N ++ + Sbjct: 315 GQHD--SAFYASMWYQLAAD-GHWQGEISNRRKNGELYPSWLTINAVRNKANLTTHFVAV 371 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI+ K + + A D LTG+PNR F RL + L S +L V+ +D+D+ Sbjct: 372 FADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSL-GAVLFLDLDR 430 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG VGD +L + R+ E L+ D +ARL G+ F ++L A Sbjct: 431 FKHINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIAN 490 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + P E E+ ++ SIG + + + ++KNA+ AMY +K +G N VES+ Sbjct: 491 KLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESY 550 Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + S+R+ ++++L A++ ++L L Y P I L+ ++G EALI+W+HP +G++ Sbjct: 551 TCDLTTQASERIALEQELRRALDRNQLSLAYQPKISLLTHTLIGAEALIRWNHPTFGDVP 610 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AEE MI I ++LE+ + + WR P + +N+A L L E Sbjct: 611 PEHFIPLAEENGMILQIGEWVLEQACQQMGKWRK-TCQPFGPVSVNLAGAQLRQTNLVEH 669 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ L++ P ++L +E +M + + +L +L+K+G+ L +DDFGT S LSYL Sbjct: 670 IEQLLADNGLEPGCLQLEITEHFIMSQTQEALAVLHKLKKLGVQLAIDDFGTGYSSLSYL 729 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S + G E AI+R+II + ++++ T+IA+ + + LTR G Sbjct: 730 KRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSMQLTVIAEGVENSEQQQFLTREG 789 Query: 932 CDYIQDSHVASPLGFNSI-LKLL 953 C+ IQ ++ PL + L Sbjct: 790 CEQIQGYIISLPLQPEEFSARFL 812 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 8/153 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 +++ + Q + E+ + A S D + + I G + Sbjct: 122 LVIVRDITQRKQAQQQLQLSEEKFAKAFHASPDGLAITRQQDGMLLEVNEGFCRITGYSE 181 Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + ++ + DR L R + R+R D + P Sbjct: 182 AYCLEHSTFDLGVWVDLGDRSRLIEQLKRHGSVR----DFRARLRNVDGSIKLCELSSHP 237 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + D L + IA DITE ++ E + A Sbjct: 238 IVIAGDDCL--LTIARDITESRQMQEKLHLAAT 268 >gi|77461371|ref|YP_350878.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1] gi|77385374|gb|ABA76887.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1] Length = 1248 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 158/574 (27%), Positives = 265/574 (46%), Gaps = 12/574 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + + ++ + + + V D + I G + Sbjct: 665 MLTIARDITERHLMQEKLQQAATVFESTAEGVLITDTQQHISAVNRAFTEITGYSESEAL 724 Query: 447 G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G R +H D + + G Q E R + + + + I + N Sbjct: 725 GHTPRLLASGLH--DSAFYAAMWHQLTDE--GHWQGEISNRRKNGELYPSWLTISAVRNR 780 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + I ++ + DI+ K + + A D LTG+PNR F RL T L+ S ++ + Sbjct: 781 DKFITHFVAVFADISSLKHAQAKLDYQAHHDPLTGLPNRTLFESRLLTALN-SQQENGGQ 839 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K IND LG VGD +L + R+ E L+ D +ARL G+ F I+L Sbjct: 840 GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAVRLKEQLRDIDTVARLGGDEFIILLPGLQ 899 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + A + P E E ++ASIG + + + ++KNA+ AMY +K Sbjct: 900 QPGDADNIATKLLNCFGAPFQAGEHEFFISASIGTSLYPRDGCDVATLIKNADAAMYRSK 959 Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G N VES+ + S+RV ++ +L A+E ELYL Y P I L D +VG EALI+ Sbjct: 960 AKGRNRVESYTRDLTAQASERVALEHELRRAIEREELYLYYQPKISLDDHSLVGAEALIR 1019 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP +G + F+ +AEE MI I ++LE R + W + +N+A Sbjct: 1020 WRHPNFGEVPPEHFIPLAEENGMILQIGDWVLETACRQMFEWGQIYESLG-PLSVNLAGA 1078 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L L ++ L+ P ++L +E+ +M E + +L +L+ +G+ L +DDF Sbjct: 1079 QLRQPNLLGRIEQLLKDNRLRPELLQLEITENFIMSQAEEALAVLHQLKHLGVQLAIDDF 1138 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D +K + S + G AI+R+II + ++++ T+IA+ + + Sbjct: 1139 GTGYSSLSYLKRLPLDILKIDQSFVRGLPDDPHDAAIVRAIIALGRSMQFTVIAEGVETQ 1198 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954 + L GC+ IQ V+ PL L+ Sbjct: 1199 AQQQFLAAEGCEQIQGYIVSLPLPPEEFAATFLR 1232 Score = 76.1 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 5/168 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + +L+ ++ +VI I + + Q + S V I W+ Sbjct: 268 LLIYGLPGLSLLVIVLAVVIRINRRLSSEIARRIDLEQELRSSEYHYRGLVESLSAIAWE 327 Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 I +P +LG W IH D ++ D V R Sbjct: 328 ARISDFTYSYVSPHAEDLLGYPLSHWL-IPGFWRNIIHPADLTRAQSFCDHEVLAGRDH- 385 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD + W+ + + +G G+ DI+E K++ E Sbjct: 386 SLDYRVITADGRCLWVRDIVSLI--EHGHEPVMRGLMIDISETKRTEE 431 Score = 51.9 bits (123), Expect = 5e-04, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 21/208 (10%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389 + W + + L + N + G V ++ V++ Sbjct: 487 LNIWGIPGVGPGLLQRLQAGSIRNLEMPFRRNNGQVFTGLISAEPFELDTTPALVVVVRD 546 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGL-ASGSMHG 447 + Q + + E+ + A S D + + + I G ++ S+ Sbjct: 547 ITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVNEGFSRITGFNSAMSVDR 606 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSN 506 + ++++N+R +L +R G ++ + +R +D Q + RP+ Sbjct: 607 SALDLGIWVNLNERKQMLDLL-----HRDGFVRDFSCHIRRSDGQIRLCEVSSRPL--PI 659 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534 GD + IA DITE+ E + A Sbjct: 660 GDEDCMLTIARDITERHLMQEKLQQAAT 687 >gi|241763480|ref|ZP_04761533.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] gi|241367321|gb|EER61652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] Length = 830 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 134/589 (22%), Positives = 262/589 (44%), Gaps = 17/589 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDI 434 + + V+Q V ++ + ++++ + D + + Sbjct: 243 GMRVEMGVVQDVTEEHRSAEQLREQLLFIQRIASRIPGFIYEYRMHNDGASSVPYISDAV 302 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +G+ + + + +D + R + + Q E+RV D W Sbjct: 303 REFMGVNPEDVMRDHGLLMRSVVPDDAAHVRRSAVASLRN-LAPWQCEYRVSMPDGSVRW 361 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 I P +G ++ + G DIT++K++ + I AF D LTG+PNR+ LDRL Sbjct: 362 HITNAIPHREPDGSVVSH-GFTMDITDRKRAEQEIERLAFYDALTGLPNRRMLLDRLQRA 420 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + ++ ++ ID+D +K +ND LG +GD +L + R+ ++ D +AR G Sbjct: 421 VAATSRTQQF-GALLFIDLDNFKDLNDTLGHDMGDHLLSQVAARLLACVRETDTVARFGG 479 Query: 615 NRFGIILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 + F ++L + + A + S+ P L ++ T SIG + +++ Sbjct: 480 DEFVVMLETLRPELTEAASQAEIVAEKLLASLNQPFALGGQQHYSTPSIGITLFGDERLS 539 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727 E+LK A+LAMY AK G N F + ++ DL + EL + Y P+ Sbjct: 540 VDELLKRADLAMYQAKGAGRNTQRFFDPDMQAAVNARSNLEADLRQGLARGELCVYYQPV 599 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + ++G+EAL++W HP G IS ++F+ +AE+ +I + +L+ + W + Sbjct: 600 VDHRA-RLLGVEALVRWRHPVRGMISPADFIPLAEQTGLILPLGQQVLQTACGQLQRWGE 658 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + + + +N++++ + + P ++KL +ES+++G+ E + Sbjct: 659 RKQTRHLSVSVNVSARQFRQPGFVAEVLQTLQGCGADPRKLKLELTESLLLGDVEDTIAR 718 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPM 905 + +L++ G+ LDDFGT S LSYL +P D VK + + + AI+R+I+ + Sbjct: 719 MEQLKREGVGFALDDFGTGYSSLSYLKRLPLDQVKIDQGFVRDVLTDPNDAAIVRTILAL 778 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A++++ ++A+ + + L GC+ Q P I L Sbjct: 779 AQSLDLEVVAEGVETTGQLAFLRLHGCEGFQGYLFGRPGPVEDIDAYLS 827 Score = 69.6 bits (169), Expect = 3e-09, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 12/181 (6%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL--AVLG- 413 + L + + V V + + E+ + + G Sbjct: 94 VLAWELSARRVAGCSIMVTVRDVSEVETLRAALAACERSLEETRRELREQSDVFNTMEGL 153 Query: 414 SGDIVWDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + W D + +P + I G P R + I DR F Sbjct: 154 ARTGHWRRIEDPGETVLLWSPGLCDIAGFDRQEWVSPERA-VSGILPEDRHVFEKA---- 208 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + E+R R D + WM R+R + +G + G+ D+TE+ +S E + Sbjct: 209 -REKVAGADIEYRWRRPDGEVRWMRSRVRRARSGDGMRVEM-GVVQDVTEEHRSAEQLRE 266 Query: 532 N 532 Sbjct: 267 Q 267 >gi|220933826|ref|YP_002512725.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] gi|219995136|gb|ACL71738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] Length = 1082 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 138/559 (24%), Positives = 259/559 (46%), Gaps = 9/559 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 I + + + V D ++ + G ++ + G + L Sbjct: 517 RIEESLRLHAQVFDTATEGVMIADARGRILSVNRAFEQVTGYSAEEVVGRNPSILSS-GR 575 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D+ +R + D+ G E R D + + + I ++ NG+ ++ + +D Sbjct: 576 QDKAFYRRMWDTIK--GEGIWSGEIWNRRKDGEIYPEWLTISSIAGPNGEASHFVAVFSD 633 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT QK+S + I A D LTG+ NR F DRL + ++ + ++++D+D+++ Sbjct: 634 ITAQKRSEQEIDFLANHDPLTGLANRNLFEDRLAHAISMAGRNGQ-HVGLLLVDLDRFRL 692 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G GD +L RR+G ++ D +ARL G+ FGIIL ++ A + Sbjct: 693 INDGMGHGPGDALLRETGRRLGHCVRDSDTVARLGGDEFGIILEGLADAADAGMQAERIL 752 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 +++ P+ L +E+ T SIG A + + ++ +L++A+ AM AK G N+ + + Sbjct: 753 EAMRAPLRLGGQELFCTVSIGIAVFPADGTDAATLLRHADTAMALAKREGRNNFQFYTHA 812 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + R+ I+ L A+E EL L Y PI+ I +E+L++W HP+ G +S Sbjct: 813 LTEAVFSRLNIETGLRHALERDELRLHYQPILDAASGRIAAMESLMRWQHPERGLVSPGV 872 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I A+ + L + +W D P+ + +NI + E + Sbjct: 873 FIPVAEQSDLILALGRWALVSACAQVRAWSDAGL-EPVPVSVNIPACHFRQPGFVEEVLG 931 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES +M + + RLR G+ + +DDFGT S L YL Sbjct: 932 VVRETGVQPQSLIIELTESALMEPVSLAEERIRRLRDTGVVVAIDDFGTGYSSLGYLQRF 991 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 + +K + S ++G E AI ++I ++ ++ ++A+ + + + L GCD Sbjct: 992 HVNYLKVDRSFVSGLPGDENARAITEAVIGVSHSLGLQVVAEGVETQAQLDHLRATGCDK 1051 Query: 935 IQDSHVASPLGFNSILKLL 953 +Q P+ LL Sbjct: 1052 VQGYLTGRPVTAEVAATLL 1070 Score = 59.2 bits (142), Expect = 4e-06, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 8/161 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 ++ + V + + RQ+ + + ++ D P + G + G Sbjct: 375 SLQREVEQRRQAEAEVLAQSRRQAQVLEAVDEAIFGLDADCRVEFANPAAEALAGCSIGQ 434 Query: 445 MHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQ----YEFRVRAADNQFHWMIIRI 499 M G + + I +D+ D + + ++ + D + + Sbjct: 435 MRGQRLSGVLQI-RDDQGRSAWEPDGDCLAEDPMPVSIRRAFDQTLYHRDGRVLVVDYAF 493 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF-QDNLT 539 RP+ G + + DIT +K+ E + +A D T Sbjct: 494 RPIL-EGGQVRGGVFSCRDITGRKRIEESLRLHAQVFDTAT 533 >gi|251798349|ref|YP_003013080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Paenibacillus sp. JDR-2] gi|247545975|gb|ACT02994.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Paenibacillus sp. JDR-2] Length = 1095 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 146/578 (25%), Positives = 285/578 (49%), Gaps = 15/578 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ + + + + V S V+ + P + +LG Sbjct: 366 YSIAKDITTKKQAENALIEAESKYRSLVEKSIVGVYIIQ-KNIILYANPYLIDMLGYKEA 424 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + ++ +D + + + +++ RV A+ + + + + Sbjct: 425 IIG---MSIWDIVYPDDYSVVKQNIQ-ILYNETDAIRHPLRVLTAEGKLLDVEMYSNRIM 480 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G IG D+TE+K++ E A+ D+LT +PNR+ F + L L+ + T Sbjct: 481 -YQGSPA-VIGTILDVTERKRAEELNAFLAYHDSLTELPNRRKFEEMLENALETAKTARR 538 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 VM +D+D++K IND LG AVGD +L++ ++R+ E ++ D AR+ G+ F +IL Sbjct: 539 -HFAVMYLDMDRFKYINDSLGHAVGDQLLIAFSKRLQEQIRETDFAARMGGDEFTVILPH 597 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + A + + P + + E+ +T SIG + + + SS ++KNA+ A++ Sbjct: 598 IRDNNSAIEVARRIIERTREPFYIEDYELFITTSIGISIYPNDGDDSSTLMKNADSALFR 657 Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + F ++ +++DL A++ EL + Y P + + EIVG EAL Sbjct: 658 AKDLGKNGYQIFTSSMNVQTYKVFTLEKDLRKAIQRDELEMYYQPKVNIHTGEIVGAEAL 717 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W+HP+WG +S +EF+ I+EE +I ++ ++ + R W+ A + PI I IN+ Sbjct: 718 IRWNHPEWGLVSPNEFIPISEETGLILSLGNWVKRTVCRQNKEWQ-LAGLKPIPISINVT 776 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 +K L + + +Q ++++T P +++ +ES ++ N E L L K+G++++LD Sbjct: 777 AKRFLSKDFMDAIQQILAETGLEPHYLEIEITESSLLENAETVMHTLDSLNKLGVTISLD 836 Query: 862 DFGTKCSLLSYLGYIP--FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKD 917 DFGT S LSYL + +K + S + + AI+ +II +A+++ +++A+ Sbjct: 837 DFGTGYSSLSYLKRFKHTINILKIDRSFIHDLHQGSDDNAIISAIIQLAQHMNMSVVAEG 896 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + L + CD +Q + P+ + +LLK Sbjct: 897 VETGEQLHILKLLKCDLVQGYLFSRPVQAEAFAQLLKR 934 Score = 63.4 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 43/124 (34%), Gaps = 7/124 (5%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 +R + + D+ + + + G ++ +I+ D + Sbjct: 140 EQRYITLLKNMFSAAFIIDLQGNILDVNDAAVKLTGYNKQE----HVHFSQFINPEDLEQ 195 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + L ++ + + ++ + P+ + I IGI+NDI+++ Sbjct: 196 AMAYNQRALEGET--LSFQISILHKNGHNVDVMTTLSPIYMHD-QITGIIGISNDISDET 252 Query: 524 KSLE 527 ++ + Sbjct: 253 RNKQ 256 Score = 61.9 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 5/130 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + +R + D + +D+ + + + ILG + + N+ + Sbjct: 255 KQLFQINKQRYESLFEQNPDAISYFDLNGNFMDCNSALENILGYSREELL--YSNYSHLV 312 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +RD R D + + +M + P++ + I+ IA Sbjct: 313 AEYERDRARFYFDQALQGTVQSYELVC--LHKQGHLVYMKLTKLPIT-VDNRIVGIYSIA 369 Query: 517 NDITEQKKSL 526 DIT +K++ Sbjct: 370 KDITTKKQAE 379 >gi|257483091|ref|ZP_05637132.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011675|gb|EGH91731.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 829 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 155/564 (27%), Positives = 268/564 (47%), Gaps = 15/564 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 E+ LA + + V D + I G + G R Sbjct: 255 ESRQMQEKLHLAATVFESTAEGVLITDTNQRINAVNRAFTEITGYSESEAIGQTPRLLAS 314 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D + ++ G Q E R + + + + I + N ++ Sbjct: 315 GQH--DSAFYASMWHQLAA--DGHWQGEISNRRKNGELYPSWLTINAVRNKANLTTHFVA 370 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI+ K + + A D LTG+PNR F RL + L S +L V+ +D+D Sbjct: 371 VFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLLSALLHSEESGSL-GAVLFLDLD 429 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG VGD +L + R+ E L+ D +ARL G+ F ++L A Sbjct: 430 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIA 489 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + P E E+ ++ SIG + + + ++KNA+ AMY +K +G N VES Sbjct: 490 NKLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 549 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + S+R+ ++++L A++ ++L L Y P I L+ ++G EALI+W+HP +G++ Sbjct: 550 YTCDLTTQASERIALEQELRRALDRNQLSLAYQPKISLLTHTLIGAEALIRWNHPTFGDV 609 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AEE MI I ++LE+ + + W P + +N+A L L E Sbjct: 610 PPEHFIPLAEENGMILQIGEWVLEQACQQMGKWHK-TCQPFGPVSVNLAGAQLRQTNLVE 668 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ L++ P ++L +E+ +M + + +L +L+K+G+ L +DDFGT S LSY Sbjct: 669 HIEQLLADNGLEPGCLQLEITENFIMSQTQEALAVLHKLKKLGVQLAIDDFGTGYSSLSY 728 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P D +K + S + G E AI+R+II + ++++ T+IA+ + + LTR Sbjct: 729 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSMQLTVIAEGVENSEQQQFLTRE 788 Query: 931 GCDYIQDSHVASPLGFNSI-LKLL 953 GC+ IQ ++ PL + L Sbjct: 789 GCEQIQGYIISLPLQPEEFSERFL 812 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 8/153 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 +++ + Q + E+ + A S D + + I G + Sbjct: 122 LVIVRDITQRKQAQQQLQLSEEKFAKAFHASPDGLAITRQQDGMLLEVNEGFCRITGYSE 181 Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + ++ + DR L R + R+R D + P Sbjct: 182 AYCLEHSTFDLGVWVDLGDRSRLIEQLKRHGSVR----DFRARLRNVDGSIKLCELSSHP 237 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + D L + IA DITE ++ E + A Sbjct: 238 IVIAGDDCL--LTIARDITESRQMQEKLHLAAT 268 >gi|56476428|ref|YP_158017.1| hypothetical protein ebA1830 [Aromatoleum aromaticum EbN1] gi|56312471|emb|CAI07116.1| hypothetical protein ebA1830 [Aromatoleum aromaticum EbN1] Length = 815 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 163/692 (23%), Positives = 294/692 (42%), Gaps = 24/692 (3%) Query: 269 LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY 328 + L R S A ++ ++ +T A + Sbjct: 130 VRRPLLLERNEIGFLQFGVSVSVLAAARKAITEQGAVIALVEILLTFALLSGIGFLLTRK 189 Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 L+ + RL D V+ Sbjct: 190 LSR--------------LLASSQAIAEGRLNHRLPEDGHDELSRLSQHFNVMAANLQD-- 233 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + + + +R LA+ G+ D +WDWDI V +P I GL++ Sbjct: 234 RIGELQDTAARLKASEQRYELAIQGAHDGLWDWDIAAGSVYCSPRCCEITGLSADRPLQS 293 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + L IH D +R L + + + E+R+R D + W++ R + +G Sbjct: 294 PTDILGRIHPLDVSAYRNELVQHLKGNSAQFKAEYRMRQHDGSYCWVMKRGVALRGPHGR 353 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLRPT 567 R G +DI K + + +A D+LTG+PNR FL+ + + L ++ Sbjct: 354 AFRMAGSISDIHLHKLAQMQLQFDALHDSLTGLPNRALFLEHVHSALGQQQRRANHFGFA 413 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+++++ +ND G A GD++L + I L+ D+ AR+ G++F ++L ++ Sbjct: 414 VLAIDLERFRLVNDSFGHAAGDELLKKVAEAIRATLRQGDVAARVGGDQFALLLNGIDDP 473 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH- 686 + A+R++IA P L + IG A T +L++A+ A+ A+ Sbjct: 474 AESLRLVEALRENIAKPTWLAGHTLYPKCRIGVALSTDH-DDGEALLRDADNALQQAREG 532 Query: 687 --RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G + + + + ++ +L A+ N L + + PI+ L D I EAL++W Sbjct: 533 GCEGRVAMFHASMHTHALQTLRLEGELRTALRNDGLAVHFQPIVALADGSISSFEALVRW 592 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASK 803 HP G ++ F+ +AE L +I +++ +L R ++ W+ +AN P+ + +N+++ Sbjct: 593 PHPTEGMLAPDLFIPLAETLGLIHELDMLVLRRACEHLLQWQRRANGEPVPRVSVNLSAL 652 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 +L + A + + P +++ +ESV+ + +L RLR IG+S+ +DDF Sbjct: 653 QFSRPDLAGEIIAEVRRHGLPPGLLRVEVTESVLAETSGPATQVLQRLRDIGMSVLIDDF 712 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL IP D VK +GS + I+ I +A ++ ++A+ I Sbjct: 713 GTGYSALSYLHTIPCDLVKLDGSFVRSLEHDERLRKIVARSIELAHDLGIRVVAECIETP 772 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L MGCDY Q H + PL + LL Sbjct: 773 EQDALLRAMGCDYGQGYHYSRPLDPLAAEHLL 804 >gi|152998686|ref|YP_001364367.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151363304|gb|ABS06304.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS185] Length = 1074 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 148/593 (24%), Positives = 281/593 (47%), Gaps = 15/593 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 P L + + + + + Q R + S + + D Sbjct: 470 PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 529 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P I G + G + L H +F T + + G+ + E + Sbjct: 530 LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 585 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + Q + + I + N G I+++IG+ DI+++K+ + + A D LTG+PNR+ F Sbjct: 586 KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 645 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL + ++ D + +++ID+D++K INDV G A GD +L + +R+ + D Sbjct: 646 NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 704 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 + R+ G+ F +IL N L I A + ++++MP +L +REI ++AS G + Sbjct: 705 FITRIGGDEFVLILPRLTNELAIEHMATRIIETLSMPFDLNDREIQISASFGIGVYPEDG 764 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S + +N E AMY AK G N+ + F ++ R+ +++ L AV +E L Y Sbjct: 765 LDVSSLTRNTETAMYQAKDAGRNNFKYFTAGMNQAMFARMELEQRLRRAVAQNEFALHYQ 824 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ + + +EALI+W P +G I +F+ +AEE +I+ + ++L + D+ W Sbjct: 825 PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 884 Query: 786 RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + I + IN++ + ++ + +Q ++ +P + + +ES++MG+ Sbjct: 885 QKSG--LKINVAINVSGRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 942 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L +R +G + +DDFGT S LSYL P +K + S + + + +++ Sbjct: 943 HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 1002 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +I+ M +++E ++A+ I E L +GC + Q ++ PL F+ I LL Sbjct: 1003 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 1055 >gi|71909355|ref|YP_286942.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71848976|gb|AAZ48472.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 722 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 149/596 (25%), Positives = 270/596 (45%), Gaps = 21/596 (3%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++I + Q S + V S D+++ D + Sbjct: 127 MIIAVERALVHRQRKKEHALISAQMQHSERLHRFLVEQSPDMIFTLDPQGRFTFINGRVN 186 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA------- 488 +LG G + G ++ + D ++ + R E R R Sbjct: 187 ALLGYTPGELTGQ--HYSQVVDSRDYEHVQYAFIERRVGERATSNLEVRFRRKPSSPALR 244 Query: 489 DNQFHWMIIRIRPMSNSN--GDILRYIGI---ANDITEQKKSLEGILCNAFQDNLTGIPN 543 + I+ + + + G ++G A DI+E+KK+ E I AF D LT +PN Sbjct: 245 NGAVVTSILSSQGVYETQQFGQPSAFLGTSGVARDISERKKAEETITFQAFHDLLTKLPN 304 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R FLDRL + ++ + + VM +DID++K +ND G VGD +L R+ L Sbjct: 305 RILFLDRLEMAIAQASRREE-KLAVMFLDIDRFKLVNDTYGHQVGDQLLREFAARVRRCL 363 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 + D LAR G+ F +L + N A + P + E + T SIG A + Sbjct: 364 RTGDTLARQGGDEFTALLPTLTNRDDANVVAEKILSETRRPFVVAETQFLATTSIGIAIY 423 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENS-EL 720 + ++++ A++AMY K +G N F+ + R+ I+ DL A++ + Sbjct: 424 PDDGTNAQDLIRCADMAMYQVKAQGKNGYVVFQEHMHTAHLDRLSIENDLRKALKEGNQF 483 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L + P I VG+EALI+W HP+ G IS F+ IAEE +I AI+ ++L Sbjct: 484 ELHFQPQIDATVGRAVGVEALIRWHHPREGLISPEIFIPIAEETGLIIAISDWVLREACA 543 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + R+Q + I +N++ ++ +L E ++ + + SP +++ +ES++M + Sbjct: 544 QLAHLREQGFGT-LRIGVNLSPREFDRADLLERIRIPLDEFGISPESLEIEITESLLMKD 602 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 E + RLR G+ +++DDFGT+ S L+YL + +K + S + ++ AI Sbjct: 603 VENIVAQVKRLRSTGVHVSIDDFGTRYSSLNYLRRFSVNRIKIDQSFVRDLQTSQDSYAI 662 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +++++ +A+N +I + + E + L ++GC +Q + PL +++ LK Sbjct: 663 IQAMVGIARNFNLHVIVEGVETEHQVAVLGQLGCHEMQGYFFSRPLPARQLVEFLK 718 >gi|330938481|gb|EGH42084.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 828 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 154/561 (27%), Positives = 261/561 (46%), Gaps = 14/561 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 E+ LA + + V + + I G + G R Sbjct: 254 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGQTPRLLAS 313 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D + + G Q E R + + + + I + N + + ++ Sbjct: 314 GQH--DSAFYAAMWHQLAAE--GHWQGENSNRRKNGELYPSWLTISAVRNKDDLLTHFVA 369 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI+ K + + A D LTG+PNR F RL L S +L V+ +D+D Sbjct: 370 VFADISSLKHAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 428 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG V D +L + R+ E L+ D +ARL G+ F ++L + A Sbjct: 429 RFKHINDSLGHPVCDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIA 488 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + P E E+ ++ SIG + + + ++KNA+ AMY +K +G N VES Sbjct: 489 NKLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLIKNADAAMYRSKAKGRNRVES 548 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + S+R+ ++++L A+E ++L L Y P I L + G EALI+W+HP +G + Sbjct: 549 YTCDLSEQASERIALEQELRRALERNQLTLAYQPKINLTTHTLAGAEALIRWNHPTFGEV 608 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AEE MI I ++LE+ R + WR P + +N+A L L E Sbjct: 609 PPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRK-TCQPFGPLSVNLAGAQLRQTNLLE 667 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ L++ P ++L +E+ +M + + +L +L+ +G+ L +DDFGT S LSY Sbjct: 668 RIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSY 727 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P D +K + S + G E AI+R+II + ++++ T+IA+ + + LT Sbjct: 728 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSE 787 Query: 931 GCDYIQDSHVASPLGFNSILK 951 GC+ IQ V+ PL Sbjct: 788 GCEQIQGYIVSLPLDAEEFRA 808 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 47/155 (30%), Gaps = 12/155 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 +++ + Q + E+ + A S D + + G + Sbjct: 121 LVIVRDITQLKLARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRQTGYSE 180 Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + ++ +++R + + R+R + + +P Sbjct: 181 KYCLDHSTFDLGIWVDLSERSRLIERMKKHGFVK----DMRVRIRHNNGDIRLCELSSQP 236 Query: 502 --MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++ + + I DITE ++ E + A Sbjct: 237 LIIAGED----CLLTITRDITESRQMQEKLHLAAT 267 Score = 39.2 bits (90), Expect = 4.0, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 34/147 (23%), Gaps = 15/147 (10%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + D + + + GL + G L Sbjct: 10 REASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANEAFVERTGLPLDEVIGKTPTELNL 69 Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 L E R + + ++ +P + I + Sbjct: 70 WAVPGIGSKVLLQL-----QTDDIHNLEIPFRRKNGETFSGLMSAQPF--EHSPIPAVLV 122 Query: 515 IANDITEQK------KSLEGILCNAFQ 535 I DIT+ K + E AF Sbjct: 123 IVRDITQLKLARQQLQLSEEKFAKAFH 149 >gi|190894121|ref|YP_001984415.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] gi|190699782|gb|ACE93865.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 932 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 270/570 (47%), Gaps = 7/570 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + R + D+VW D+ + ++G A Sbjct: 330 LVLSRDITERKHAEGTTIEARARLLSVLQTIPDMVWLKDVTGKYLLCNHAFEELVGKAEA 389 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G FR + + R + E D + + R P+ Sbjct: 390 EIVGKTDY--DLFTPELAQFFRDKDEEAMQAGRILINEERFTAHEDGRSTLLETRKVPVF 447 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G ++ +G+A DITE S + I AF D+LTG+PNR F +RL ++ +A+ Sbjct: 448 -TGGKLMGILGVARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQ 506 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R VM+ID+D +K IND +G VGD++L + R+ + ++ D +ARL G+ F ++L + Sbjct: 507 -RAGVMLIDMDHFKAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPN 565 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ +A A M + L +REI V+ SIG + + + +++K A+ AMY Sbjct: 566 VQDNDDLAQIASRMLAAFGERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYL 625 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G ++ + R+ ++ DL LA+++ +L L Y P + L + +++G EAL Sbjct: 626 AKRSGRSNFRFYSKDLTIGAEKRLALESDLRLALKHEQLELHYQPKVLLDNGKVIGSEAL 685 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HPK G I EF+ +AEE +I + ++L PP I IN++ Sbjct: 686 LRWHHPKMGMIPPGEFIGVAEETGLIIDLGRWVLHEACCTAAVMNADGL-PPHKIAINLS 744 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 K L + + ++ +T I++ +ES+++ N E L +L GIS+ +D Sbjct: 745 PKQFQCPRLSQTVADVLQETGCRAEWIEVEITESLLLHNCEGVSTTLSQLHASGISIAID 804 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 DFGT S LSYL P DT+K + S + S ++ ++++I+ +A+ + ++A+ + Sbjct: 805 DFGTGYSSLSYLANFPIDTLKIDRSFINRSDKRSRELVKAILSIARCLGQNVVAEGVETV 864 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951 K L GC Q + + P+ + +L Sbjct: 865 DQEKFLAESGCAVAQGFYYSKPIPKSELLA 894 Score = 64.2 bits (155), Expect = 1e-07, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 3/143 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + E + D++++ + + IL Sbjct: 204 VGAMLDITERKRAEHDLKEALEFAEGIIAAIPDVLFEVNADGRYLQVWARNQEILAQRKE 263 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + + + D L+ R+ + + W + + Sbjct: 264 VLLGKL--VRDVLPPDQADIAMLALEEA-DETGASYGRCVRIALPNGESRWFELSVARRP 320 Query: 504 NSNGDILRYIGIANDITEQKKSL 526 +SN + ++ ++ DITE+K + Sbjct: 321 SSNHSTVTFLVLSRDITERKHAE 343 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 11/129 (8%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 ++ + V+ + + + G + G + G + Sbjct: 102 AVVLDAIPLPVFFKNRDGIHLGCNRAFESFSGRSKGDIIGK--TVFDLV-PAPIAETYAA 158 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 LD + G QYE + + +++ +++ G+ + +G DITE+K+ Sbjct: 159 LDEALFANGGVQQYEAKATTENGGVVDLLLSKTAITDIAGNRIGLVGAMLDITERKR--- 215 Query: 528 GILCNAFQD 536 A D Sbjct: 216 -----AEHD 219 >gi|327193499|gb|EGE60393.1| two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 932 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 270/570 (47%), Gaps = 7/570 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + R + D+VW D+ + ++G A Sbjct: 330 LVLSRDITERKHAEGTTIEARARLLSVLQTIPDMVWLKDVTGKYLLCNHAFEELVGKAEA 389 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G FR + + R + E D + + R P+ Sbjct: 390 EIVGKTDY--DLFTPELAQFFRDKDEEAMQAGRILINEERFTAHEDGRSTLLETRKVPVF 447 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G ++ +G+A DITE S + I AF D+LTG+PNR F +RL ++ +A+ Sbjct: 448 -TGGKLMGILGVARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQ 506 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R VM+ID+D +K IND +G VGD++L + R+ + ++ D +ARL G+ F ++L + Sbjct: 507 -RAGVMLIDMDHFKAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPN 565 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ +A A M + L +REI V+ SIG + + + +++K A+ AMY Sbjct: 566 VQDNDDLAQIASRMLAAFGERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYL 625 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G ++ + R+ ++ DL LA+++ +L L Y P + L + +++G EAL Sbjct: 626 AKRSGRSNFRFYSKDLTIGAEKRLALESDLRLALKHEQLELHYQPKVLLDNGKVIGSEAL 685 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HPK G I EF+ +AEE +I + ++L PP I IN++ Sbjct: 686 LRWHHPKMGMIPPGEFIGVAEETGLIIDLGRWVLHEACCTAAVMNADGL-PPHKIAINLS 744 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 K L + + ++ +T I++ +ES+++ N E L +L GIS+ +D Sbjct: 745 PKQFQCPRLSQTVADVLQETGCRAEWIEVEITESLLLHNCEGVSTTLSQLHASGISIAID 804 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 DFGT S LSYL P DT+K + S + S ++ ++++I+ +A+ + ++A+ + Sbjct: 805 DFGTGYSSLSYLANFPIDTLKIDRSFINRSDKRSRELVKAILSIARCLGQNVVAEGVETV 864 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951 K L GC Q + + P+ + +L Sbjct: 865 DQEKFLAESGCAVAQGFYYSKPIPKSELLA 894 Score = 64.2 bits (155), Expect = 1e-07, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 3/143 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + E + D++++ + + IL Sbjct: 204 VGAMLDITERKRAEHDLKEALEFAEGIIAAIPDVLFEVNADGRYLQVWARNQEILAQRKE 263 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + + + D L+ R+ + + W + + Sbjct: 264 VLLGKL--VRDVLPPDQADIAMLALEEA-DETGASYGRCVRIALPNGESRWFELSVARRP 320 Query: 504 NSNGDILRYIGIANDITEQKKSL 526 +SN + ++ ++ DITE+K + Sbjct: 321 SSNHSTVTFLVLSRDITERKHAE 343 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 11/129 (8%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 ++ + V+ + + + G + G + G + Sbjct: 102 AVVLDAIPLPVFFKNRDGIHLGCNRAFESFSGRSKGDIIGK--TVFDLV-PAPIAETYAA 158 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 LD + G QYE + + +++ +++ G+ + +G DITE+K+ Sbjct: 159 LDEALFANGGVQQYEAKATTENGGVVDLLLSKTAITDIAGNRIGLVGAMLDITERKR--- 215 Query: 528 GILCNAFQD 536 A D Sbjct: 216 -----AEHD 219 >gi|326314856|ref|YP_004232528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371692|gb|ADX43961.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1499 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 139/626 (22%), Positives = 252/626 (40%), Gaps = 17/626 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 A + + + + + +++ + A Q Sbjct: 878 VARLGAQAYVGLQLRSAEGQPIGFVFVVFREPLQQPGMVISTLRIFAARAAAEMARQASD 937 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + RQ+ + + D + D+ + G G + ++ + + Sbjct: 938 AHIRRQASLLDKARDAIIVRDLDHHITFWNEGAERLYGWTREEAMGQ--SIATLLYQDTQ 995 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + R + +G E D + + R + G + I DI + Sbjct: 996 EFLRATQAT---QEQGEWAGEIVQFHRDGRRLDVEGRWTLVQGEQGQPDSILAINTDIGQ 1052 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K + I AF D+LTG+PNR +DR+ L + ++ ID+D +K +ND Sbjct: 1053 RKATEREIQRLAFYDSLTGLPNRMLLMDRMRHALATAQRRRQG-GALLFIDLDNFKTLND 1111 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIA 636 LG GD +L + R+ ++ D +ARL G+ F +++ + Sbjct: 1112 TLGHDQGDVLLQQVAARLNTCVRSVDTVARLGGDEFVVMIEGLSPHPDDLALSARTVGEK 1171 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +A P L T SIG A + T E+LK A+LAMY AK G N + F Sbjct: 1172 ILAVLATPYVLQGYHYRSTPSIGVAPFGDGRASTVGELLKQADLAMYQAKTAGRNTLRFF 1231 Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++ DL A+ + L Y P I + G+EAL++W HP+ G +S Sbjct: 1232 DPGMQAVVTARAELENDLRTALAREQFMLHYQPQIDHRGG-VTGVEALVRWPHPQRGMVS 1290 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ +AEE ++ + ++L + WR + + +N++S+ E Sbjct: 1291 PGEFIPLAEETGLVLPLGRWVLHTACAQLARWRHVPGRGHLSMAVNVSSRQFHHEAFVED 1350 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + I+ T SR+KL +ES+ + + E + + LR G+ +LDDFGT S LSYL Sbjct: 1351 VVRAITATGAPASRLKLELTESLFVEDMETTIATMAALRSHGVGFSLDDFGTGYSSLSYL 1410 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S + AI+ +II +++++ +IA+ + L + G Sbjct: 1411 KRMPLDQLKIDQSFVRDLLADPNDAAIVDTIIALSRSLGLDVIAEGVETAEQRSRLEQAG 1470 Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957 C Q + PL ++ L ++ Sbjct: 1471 CRAYQGYFFSRPLPETALEDFLVQKL 1496 Score = 132 bits (332), Expect = 3e-28, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 73/201 (36%), Gaps = 2/201 (0%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 A + + + + R + + ALV + L+ + +A Sbjct: 109 RMRMAACMPISTADGLTLGAVVILDAAPRHLEESQREALVAIASQAMALLELRRQRRGMA 168 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + ER L + D +WDW++ D + + + G+ ++ +W Sbjct: 169 QRAQERAL--SEERFHLVARATADAIWDWNLTDDSMWWNEGMEVLFGVPLHTLPHDSTSW 226 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 +H D D + + + E+R R D + W+ R + ++ G LR Sbjct: 227 TQRLHPEDSDRVLESIHAAIEGDALHWMDEYRFRRQDGTYAWIRDRGFVIRDAQGQGLRM 286 Query: 513 IGIANDITEQKKSLEGILCNA 533 +G DI+ QK+S +A Sbjct: 287 VGGMTDISAQKQSALQAQRDA 307 >gi|89091982|ref|ZP_01164937.1| hypothetical protein MED92_07441 [Oceanospirillum sp. MED92] gi|89083717|gb|EAR62934.1| hypothetical protein MED92_07441 [Oceanospirillum sp. MED92] Length = 944 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 143/596 (23%), Positives = 276/596 (46%), Gaps = 14/596 (2%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-QSLA---VLGSGDIVW 419 + + + + + + +R SLA + + + Sbjct: 350 DQVQIYIFLLLATIFSLGFSLLFSGWLNRKFTEYHREIESKQRALSLASQVFDNASEGIM 409 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 +T I G ++ + G +L + + F + + G Sbjct: 410 VTGSDNRLLTVNDAFVDITGYSADEVVGKNPKFLQSGRHD--ETFYRSMWQMI-NTSGYW 466 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 + E R + + + I+ +++S G YI D+TE+K+ E + + D LT Sbjct: 467 RGEIWNRRKNGEVFPQWLSIQAVTDSAGMARNYIASITDLTERKQVEEKLRYLSDFDPLT 526 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 +PNR+ R+ L LS + + ++ ID+D +K IND LG GD++L + +RI Sbjct: 527 NLPNRRLLGYRVDQTLSLSRRQPDQQFALLYIDLDHFKNINDSLGHRFGDEILQKVAKRI 586 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 EL++ D ++RL G+ F I++ + + A+ A + +IA P+ + + +T S+G Sbjct: 587 TELVREGDTVSRLGGDEFMILMPELHKLEQAANLAERILHNIAQPLE-NDSHLMITPSVG 645 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVEN 717 A + + + ++L+NA+ A++ AK +G N+ + + ++ S+R+ ++ L AVEN Sbjct: 646 IAVYPNDGDSFDKLLRNADAAVHFAKRQGRNNYQFYTAEMNQRASERLQVEISLRKAVEN 705 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E L Y P + L D + G+EALI+W HP G + + F+ +AEE +I I ++L Sbjct: 706 QEFELFYQPQLNLRDGSLAGVEALIRWRHPNEGLVPPNRFIPLAEETGLILQIGSWVLVE 765 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R W + P + +N++ + EL E +++ + + SP + + +ES + Sbjct: 766 ACRQGAEW-AAKSTEPFTMSVNVSVRQF-RPELVEEVRSALLTSGLSPKSLVIEITESTL 823 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895 M + E++ LL L+++G+ L+LDDFGT S ++YL D +K + + ++ Sbjct: 824 MQDEEKTLTLLHELKELGVQLSLDDFGTGYSSMAYLKRFNLDQLKIDRAFISDLPQNPDD 883 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 AI +II +A + +A+ I + L +GC Q + P+ N + + Sbjct: 884 AAITSAIIDVASHFGLVTVAEGIEKPEQAEFLASVGCIEGQGYYYEKPIPANDLTE 939 >gi|326315980|ref|YP_004233652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372816|gb|ADX45085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 850 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 145/574 (25%), Positives = 268/574 (46%), Gaps = 22/574 (3%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-- 453 + R S D W+ D V I LG++ + G R L Sbjct: 281 LQSELRLSEARFRSLCDLSSDWYWEQDAEHRFVHVNQGIKG-LGISEDEVVGRTRWELGA 339 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + D R +L + R+ E + AAD + +W+ + P+ +++G L Y Sbjct: 340 NNLSAQDWIEHRRLLAA----RQPFRDLELQRTAADGRIYWVSVSGIPVFSADGAFLGYR 395 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 G+ DITE+K+ I AF D LTG+PNR+ DRL + +A ++ ++ +D+ Sbjct: 396 GVGRDITERKRVDAEIERLAFFDPLTGLPNRRLLTDRLHRAIGTAAQ-EHSHGALLFLDL 454 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSL 628 D +K +ND LG +GD +LV +R+ + D ++R G+ F ++ Sbjct: 455 DNFKDLNDTLGHDMGDRLLVQAAQRLLACVGAGDTVSRFGGDEFVVLAEGLPGDMHRARA 514 Query: 629 KIADFAIAMRKSIAMPINLLEREIT-VTASIGFASW---TSSKITSSEMLKNAELAMYHA 684 A A + ++ P + T SIG A + T ++LK+A+LAMY + Sbjct: 515 DAAVLANRITAALGRPYAVGGMGYHHSTPSIGLALFGGGTGDAAGVDDLLKHADLAMYQS 574 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F S ++ ++ +L A+E+ EL L Y P++ D ++G EAL+ Sbjct: 575 KAAGRNTIRFFDPSMLQAVLARAALESELRHALESDELLLHYQPLVNG-DGSMLGAEALV 633 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G + +F+ AE+ +I + ++LER +++W A + + +N++ Sbjct: 634 RWRHPQRGLVMPGDFIPAAEQGGLIVPLGQWVLERACAQLVAWSRNAATAQLVLAVNVSV 693 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + + + + + ++ P +K+ +ES++M + E + +LR G+ +DD Sbjct: 694 RQFRQPDFVDQLLQTLRRSGAQPRLLKIELTESLLMADVEEVIARMEQLRAHGVGFAIDD 753 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P D +K + S + + AI+R+I+ +A++++ ++A+ + Sbjct: 754 FGTGYSSLAYLKRLPLDQLKIDQSFVRDVLTDPNDAAIVRTILALARSLDLDVVAEGVET 813 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +K L R GC Q P + + L+ Sbjct: 814 TGQLKFLQRHGCKAFQGHLFGRPAPAAVLERALR 847 >gi|160873264|ref|YP_001552580.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160858786|gb|ABX47320.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS195] gi|315265489|gb|ADT92342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS678] Length = 1074 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 150/593 (25%), Positives = 282/593 (47%), Gaps = 15/593 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 P L + + + + + Q R + S + + D Sbjct: 470 PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 529 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P I G + G + L H +F T + + G+ + E + Sbjct: 530 LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 585 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + Q + + I + N G I+++IG+ DI+++K+ + + A D LTG+PNR+ F Sbjct: 586 KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 645 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL + ++ D + +++ID+D++K INDV G A GD +L + +R+ + D Sbjct: 646 NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 704 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +AR+ G+ F +IL N L I A + +++ MP +L +REI ++AS G + Sbjct: 705 FIARIGGDEFVLILPRLTNELAIEHMATRIIETLGMPFDLNDREIQISASFGIGVYPEDG 764 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S + +N E AMY AK G N+ + F ++ R+ +++ L AV +E L Y Sbjct: 765 LDVSSLTRNTETAMYQAKDAGRNNFKYFTTGMNEAMFARMELEQRLRRAVAQNEFALHYQ 824 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ + + +EALI+W P +G I +F+ +AEE +I+ + ++L + D+ W Sbjct: 825 PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 884 Query: 786 RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + I + IN++S+ ++ + +Q ++ +P + + +ES++MG+ Sbjct: 885 QKSG--LKINVAINVSSRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 942 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L +R +G + +DDFGT S LSYL P +K + S + + + +++ Sbjct: 943 HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 1002 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +I+ M +++E ++A+ I E L +GC + Q ++ PL F+ I LL Sbjct: 1003 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 1055 >gi|89900556|ref|YP_523027.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89345293|gb|ABD69496.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 716 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 144/569 (25%), Positives = 262/569 (46%), Gaps = 16/569 (2%) Query: 400 IFSDGERQSLAVLG-----SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 I + +R L + SG+ + D V T+ G + +L Sbjct: 130 IQRNADRIQLRLAAHVFEYSGEAIMITDRDNQIVDVNAAFTTLTGYHKSEVLSKNPKFLS 189 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 R ++ + + G Q EF R D ++ + + + GDI Y+ Sbjct: 190 S-GRTTRKEYQAMWAAIRTG--GFWQGEFWDRRKDGSVFPKMMTVSVVLDRAGDIDFYLA 246 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 D++ K++ I A D LTG+PNR L + ++ + V+ +D+D Sbjct: 247 NFVDVSHYKETERRIEHLAHHDTLTGLPNRLHLQVFLEQSILIAKRMSE-QLAVVFLDLD 305 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG VGDD+L+ + R+ ++ D++ARL G+ F +IL + + A Sbjct: 306 RFKTINDTLGHPVGDDLLIQVADRLKTSVRQYDMVARLGGDEFVMILRGHDMPSVASAVA 365 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 +R + P + + + SIG A + + +++K+A+ AMY K GGN Sbjct: 366 EKIRLHLNQPFQIGQHTLRTATSIGIALYPGNGERMDDLMKHADTAMYFTKSEGGNGFCF 425 Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ +++ ++ L A+EN + L Y P + L +++++G E L++W HP+ G I Sbjct: 426 FSSDMNLHAHEKLELENLLHGALENQQFELYYQPQLSLPEQQVIGAEVLLRWHHPEKGFI 485 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S + F+ +AE I AI ++LE R W P I +N++ + D L Sbjct: 486 SPAVFIPLAEATNQIGAIGEWVLENACRQASQWLRDGLPLP-RIGVNVSGRQFQDKNLFT 544 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ ++++T R++L +E+ V +P+ + LL LR+ GI + LDDFG S L Sbjct: 545 LVKRVLAETGLPADRLELEITETAVTASPDEAARLLQSLRECGIMVALDDFGQGYSSLGQ 604 Query: 873 LGYIPFDTVKFNGSLMTGSTEK----RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 L +P D +K + + + T++ AI + I + N+ ++IA+ + + + L Sbjct: 605 LRDLPIDRLKIDAAFVRDITDEPGHPGGAIAAATIGLGHNLGFSVIAEGVETQAQLSFLM 664 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957 GCD +Q + A P+ L+ R Sbjct: 665 AHGCDEVQGYYFAKPMPREQFEAFLRARM 693 >gi|257091944|ref|YP_003165585.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044468|gb|ACV33656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1327 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 150/569 (26%), Positives = 261/569 (45%), Gaps = 13/569 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V+ + + + S + + + + I G Sbjct: 760 VGVMLDITERKRMEARLLQA----ATVFDSSAEGITITAPDGNIIAVNRAFTEITGYTED 815 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G L DR + + + +GR + E R D Q + I + Sbjct: 816 EVIGRNPRMLQS-GFQDRRFYLDMWQAL--GTQGRWRGELWNRRKDGQTFLESLTISAVK 872 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ G + Y+G+ +DITE +++ + + A D LTG+PNR DRL L + D+ Sbjct: 873 DAQGKVAHYVGVFSDITELRRAHDQLDHQAHHDPLTGLPNRLLLGDRLHKALQRAHRDET 932 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V ID+D++K IND LG VGD VL + R+G L++ D + RL G+ F I++ Sbjct: 933 G-LAVFFIDLDRFKNINDTLGHQVGDRVLCEVAWRLGRLMRESDTVGRLGGDEFLIVIED 991 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ A + + +E E V ASIG + + + ++KNA++AMY Sbjct: 992 VGEPTAVSHIAEKILNVLQASPVTVEHEFFVGASIGISVFPQDGADAETLMKNADVAMYR 1051 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK RG N E F ++ R+ ++ DL A+E EL + P L ++VG EAL Sbjct: 1052 AKERGRNTYEFFTKDLTQTSLARLQMETDLRRAIERGELRVYLQPQFSLATGKVVGAEAL 1111 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W P+ G + EF+ +AEE +I I ++ A +W P + + +N++ Sbjct: 1112 VRWLRPQQGLVLPGEFIKLAEESGLIVPIGEWVQGTAACQWATWVAAGLAPGV-LSVNVS 1170 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + + + ++L +ES +M + E S +L LR +GISL +D Sbjct: 1171 GVEFARGRIQQTARRTLELSGLPARFLELEITESAIMSHAENSVQVLDNLRAMGISLVID 1230 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P + +K + S + G + AI R++I + +++ T+IA+ + Sbjct: 1231 DFGTGYSSLAYLKRLPLNKLKVDQSFVRGLPNDTEDCAIARAVIALGHSLQLTVIAEGVE 1290 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNS 948 E + LT GCD +Q P+ F+ Sbjct: 1291 TEAQREFLTGEGCDEMQGYLRGRPMPFDD 1319 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 4/175 (2%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 I A V + + ++ + + + V+ Sbjct: 614 TWIWAYADVTAQRAAEQALRQSHLELEQRVADRTLELSQQLHFMRQLIEAIPGPVFYKSQ 673 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + ++G + + G + D + D + R G YE Sbjct: 674 EGRYLGCNQAFLELIGKSRDEVVGATVYD---VAPADLADRYKAADDELLARLGSQVYEA 730 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF-QDN 537 RV AD + +I + +G+ DITE+K+ +L A D+ Sbjct: 731 RVLDADGHYRDVIFHKATYGKPGENGGGLVGVMLDITERKRMEARLLQAATVFDS 785 Score = 56.1 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 4/142 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + V + + + Q+L + + R P I G A G + Sbjct: 368 LFEDVTEKRQADRAMEALLREQALIFERAPTGIAFLR-DRVIQRCNPSFERIFGYAPGQL 426 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G R+ V G+ E AD W + + N Sbjct: 427 LGQSTRVCFASEAAWREAGERAY--AVADESGKFIGELEYCRADGTPIWCQVTGS-LLNP 483 Query: 506 NGDILRYIGIANDITEQKKSLE 527 Y+ + D+T ++ + E Sbjct: 484 ANPAEGYVWLFEDVTARRAAEE 505 Score = 52.6 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 10/129 (7%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDR--DN 463 + SG V V P + G +G++ G + +D D Sbjct: 14 YKAILDHSGIAVVCT--RSRLVYRCNPRAEELFGWPAGTLVGQLDAVFL---PDDASCDA 68 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 R + + + + E R+ D + R + + L + I D+T++ Sbjct: 69 LRGTVRPQLRVGK-IVDLETRLARRDGSTFVAHLIARAI-DPAAPRLGTVWIVRDVTQEV 126 Query: 524 KSLEGILCN 532 + + Sbjct: 127 LTRDTSARL 135 Score = 52.6 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 10/148 (6%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT--TTPDIATILGLASGSM 445 + V + + + Q+L + + VRDR+ P + I G + G + Sbjct: 245 EDVSEKRASAAAMDALLREQTLIFEAAPIGIA---FVRDRIIQRCNPSLERIFGYSPGQL 301 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G R+ + G E + +D W + + Sbjct: 302 IGQSTRCFFASEEAWREKGERA--QLLIDECGSFVGEVQYCKSDGLPIWCRVTGS--LAN 357 Query: 506 NGDI-LRYIGIANDITEQKKSLEGILCN 532 G+ + + D+TE++++ + Sbjct: 358 PGEPGDGLVWLFEDVTEKRQADRAMEAL 385 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 4/146 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + V A + + Q L + + + R + I G G + Sbjct: 493 LFEDVTARRAAEEALVESLWEQQLIFDNAMIGI-SYHRNRMILRCNRRCEEIFGYLEGGL 551 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G L R + E + D W+ R + Sbjct: 552 AGQPTRVLFASDEAWEAVGRQVYGESASGET--FDGELLYQRRDGTPIWVHAIGRTI-GE 608 Query: 506 NGDILRYIGIANDITEQKKSLEGILC 531 + D +I D+T Q+ + + + Sbjct: 609 SADSETWIWAYADVTAQRAAEQALRQ 634 Score = 47.6 bits (112), Expect = 0.012, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 53/184 (28%), Gaps = 24/184 (13%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417 + + I A G V IV + V+ + + Q L + Sbjct: 98 VAHLIARAIDPAAPRLGTVWIVRDVTQEVLTRDTSARLLRE--------QQLIFENAETG 149 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGY 474 + R A +LG A+ + G + ++ + R + Sbjct: 150 IVILR-ERIIQRCNRRFAELLGYAADELVGQS---TRLYYPSEEAWLETGRRAYAAIAE- 204 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 G + R + + I M N Y+ + D++E++ S A Sbjct: 205 -TGIYHGDTIFRRRNGESFCCHITGS-MMNRANPDEGYVWLYEDVSEKRASA------AA 256 Query: 535 QDNL 538 D L Sbjct: 257 MDAL 260 >gi|53804221|ref|YP_114116.1| sensory box protein [Methylococcus capsulatus str. Bath] gi|53757982|gb|AAU92273.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus str. Bath] Length = 1346 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 144/552 (26%), Positives = 256/552 (46%), Gaps = 12/552 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468 + + D R V P + + G + G +L H + + Sbjct: 790 VFEAVRESIIVTDANRVIVAVNPAFSDMTGYSPEEAVGRTPAFLQSGRH---GKEYYAAM 846 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 V G Q EF R + + ++ I + + G ++ YIG+A DI+ K++ E Sbjct: 847 WRAVDQE-GSWQGEFWNRRKNGELFAVLETIVTVRDETGAMVNYIGVAADISSLKEAEEH 905 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 I A+ D L+ +PNR+ ++R L L+ V+ +D+D +K +ND LG VG Sbjct: 906 IHHLAYYDPLSALPNRRYLMERAEYALALAERR-KEELAVVFLDVDHFKDVNDSLGHQVG 964 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D++LV + +I E + D +ARL G+ F ++L ++ A + ++ P Sbjct: 965 DELLVRVATQIKEFTRETDTVARLGGDEFALLLPDLG-RDAVSQVADKILAALRKPFEHS 1023 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708 + VT SIG + + +L+NA+ AMYHAK +G N + + Sbjct: 1024 GQTFAVTGSIGISLYPHDGTDFETLLRNADTAMYHAKQQGRNQFRFYDPGMNVDILARLT 1083 Query: 709 --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 +L A+ EL + P I L + +VG EAL++W HP G +S +F+ +AE + Sbjct: 1084 VLSELREAIPAGELRTFFQPEIDLANGTLVGAEALVRWQHPTRGLLSPDQFIPVAESNDL 1143 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I AI+ ++LE R + W+ + PI + +N+A++ D L +++L+ + S Sbjct: 1144 IIAISDWVLEDTCRHLAQWKKA-DQAPITVGVNLAARHFRDPRLVPRVKSLLCRYGVPGS 1202 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ES ++ ++ ++L L +G SL++DDFGT S LSYL +P T+K + S Sbjct: 1203 SLQLELTESTLLDADAQTMIVLQELIALGCSLSIDDFGTGYSSLSYLKNLPIATLKIDQS 1262 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + I +++ + ++ +IA+ + E + L GCD+ Q + PL Sbjct: 1263 FVRDIAFDADDRTISGTVVALGHSLGLKVIAEGVETEEQRRILLEQGCDFGQGYLFSRPL 1322 Query: 945 GFNSILKLLKER 956 +K E Sbjct: 1323 SSKEFIKWRMEH 1334 Score = 107 bits (268), Expect = 9e-21, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 6/199 (3%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 G + + I L+ DI+ A++ + + V + + Sbjct: 590 GLAAGVRASGAFPIRRFGKVVGAINLYAGERGFFSEDIV--AVLDTMAMDVSFALDILAR 647 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + ER LA + ++W D R G + G Sbjct: 648 DAERERSEMR-LRESEERFRLAANSAPVLIWMGDTARGCTFFNDMWLNFTGRSLEYELG- 705 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 WL +H DR + + R+ + E+R+R D ++ ++ + P ++ G+ Sbjct: 706 -DGWLEGMHPEDRSRWICAYSAAFDARK-PFEIEYRLRRRDGEYRTILGKATPRFDAGGE 763 Query: 509 ILRYIGIANDITEQKKSLE 527 + YIG DI+++KK E Sbjct: 764 FIGYIGSCIDISDRKKGDE 782 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 23/191 (12%) Query: 392 ATGYFSQGIFSDGERQSLA------VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + ++ ER L+ V + D + D V + G + + Sbjct: 340 ERHHMQAALEAEKERADLSRRFEYFVRYANDAILLADRDHRIVDVNDRALDLYGYSREEL 399 Query: 446 HGPIRNWLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G L + D + LD + G + D + + +R + + Sbjct: 400 AGMT---LADVVAGDVEGVEHGRLDEALARGGGVWESVH--TRKDGVPVPVELSVRSI-S 453 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G I D+TE+K+ + N S L + I+ ++ L Sbjct: 454 VEGS-DFVQAIVRDVTERKRIELALARQK---------NLYSLLAQTNQIIVRHTSEQEL 503 Query: 565 RPTVMVIDIDK 575 +V I I Sbjct: 504 FDSVCRIAIRN 514 >gi|258512579|ref|YP_003186013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479305|gb|ACV59624.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 799 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 169/795 (21%), Positives = 328/795 (41%), Gaps = 61/795 (7%) Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 +T + L ++ GVA + I+ + ++ + ML W V+ LS + Sbjct: 36 ETRANRQLVWVVLGGVAMGIGIWS-MHFVAMLALMLPAQMTYNWAVVA--------LSLV 86 Query: 243 VNLPSGELLIW---RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299 + ++ R+ S + L+ ++ + + + G A F + Sbjct: 87 FAMAGPGAALYVVARSASPVKLAYGALLMGAGIVFMHYTGMAAMTVEGGGFYYRAGPFVL 146 Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW---ILIFIWFIGLWM 356 S I + +Y ++ + L A + + M Sbjct: 147 S---------------VVIAIVASYVALWLSFRLATARGWLAQAAKVACALVMGIAIAGM 191 Query: 357 AITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 T + PA G L L+V + ++ +AT + + +D R Sbjct: 192 HYTGMWATVFVLPAHRRAAPMAYSGPLALVVAVFSAFILLAAIATVMLDRRLQADRRRLR 251 Query: 409 LAVL-------GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 LA D ++ D V P + + + R + I DR Sbjct: 252 LADERFRSLYTHHSDAIFTLDTRGAIVDQNPRAKEL--VPEHELRKSARAFARMIDRRDR 309 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 +G EF +RA D H I + + +I +A D+T Sbjct: 310 PRVFKDYRRALGGSTT--NGEFLLRAGDRALHMSATHIPIVLDD--EIEGVFLVARDVTA 365 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K + E + AF D LT + NR+ F R+ + + ++ +D+D++K +ND Sbjct: 366 EKVAAERMNYLAFHDTLTQLANRRHFEARVDDFIRDAR--PGDEMQILFVDLDRFKSVND 423 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG GD +L + R + E+ ++AR+ G+ F I L + A A+ + Sbjct: 424 TLGHEFGDKLLQEIARILKEVAGEDALVARMGGDEFTITLFR-QPMERAVAVADAILNRL 482 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 P+ + +R + +TAS+G AS+ +T +L++A+LAMY AK G + F + Sbjct: 483 RKPVRVEDRPLYMTASVGIASFPRHGVTRDMLLRHADLAMYTAKAEGRSTYRLFEERTAA 542 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + R+ ++++L A + + + Y P I + + +VG+EAL++W + EF+ Sbjct: 543 NAKSRLELEQELRTAAQRGDFEIHYQPKIDMRQKAVVGVEALLRWRRATGEYVPPCEFIP 602 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAEE +I I + L R +W D P+ + +N++ +L + + ++ ++ Sbjct: 603 IAEETGLIAPIGEWCLRAACRQAKAWLDAGR--PLSVAVNLSPYQVLTDGFLDVVREVLD 660 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T +++ +ES +M + ER+ L + +GI ++LDDFGT S LS L ++P + Sbjct: 661 ETGLPAHYLEIEVTESAMM-DAERAERFLAGCQALGIEVSLDDFGTGYSSLSRLTHLPLN 719 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 VK + + + A++ SI+ +A N+ +A+ + + + + +GCD Q Sbjct: 720 VVKIDRAFTQRAVDGGRARALVASIVDIAHNLGMRCVAEGVETKEQLSVIEALGCDEAQG 779 Query: 938 SHVASPLGFNSILKL 952 + A P+ + + L Sbjct: 780 FYFARPVPPSDLEAL 794 >gi|30249662|ref|NP_841732.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas europaea ATCC 19718] gi|30139025|emb|CAD85611.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Nitrosomonas europaea ATCC 19718] Length = 1128 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 156/606 (25%), Positives = 280/606 (46%), Gaps = 23/606 (3%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + + ++ LVL+ FT + + Y ++ + + + + Sbjct: 531 IYHRTVREPTSADLVLVEEFASFTAL--AVQKVYAAEALRLA----ATVFESIREGIVVT 584 Query: 422 DIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D+ V I G ++ + G + H D+ ++ + S G Sbjct: 585 DLEPRIVAVNRAYTEITGYSAAQVVGKNPKIIRSGRH--DKSFYQAMWSSL--QEEGYWS 640 Query: 481 YEFRVRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 E R + + + + I +S N ++ Y+G+ DI++ K+S + A Sbjct: 641 GEIWNRRKNGEIYPQWLTISAVSISSASNGRKELCNYVGVFTDISQIKQSEAQLAHLAHY 700 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D LTG+PNR RL ++ + NLR + ID+D++K +ND LG +GD++L+ L Sbjct: 701 DPLTGLPNRLLVQSRLHHAVERAQRY-NLRVATLYIDLDRFKNVNDSLGHPIGDELLIKL 759 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITV 654 T R+ L+ D LARL G+ F +++ + + A A + +A P L EI + Sbjct: 760 TERLKNRLREEDALARLGGDEFLLVMEDVKDPSESAIVAQTLIDLLATPFVLPSGHEIFI 819 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712 ASIG + + ++E++++A++AMY AK G N S ++R++++ L Sbjct: 820 NASIGISLFPDDASNATELIQHADMAMYQAKKEGRNTYRYHTEALSIAANERLIMENRLR 879 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+ E L Y P+I ++G+EAL +W P + +F+ IAEE +I + Sbjct: 880 HALAAGEFILHYQPLIDARAGHVIGVEALARWQPPDNTIVPPGKFIPIAEETGLIVPLGE 939 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L +W D +PP+ + +N++ + L E +Q ++ +T ++L Sbjct: 940 WVLRTACEQGRAWID-TGLPPLVMAVNLSVRQFQSENLVELVQRILEETRLPAVCLELEL 998 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +ES+ M + ERS L RL+ +GI L +DDFGT S L+YL P D +K + S + G Sbjct: 999 TESMFMEHAERSIETLNRLKALGIQLAIDDFGTGYSSLTYLKRFPIDKLKIDQSFVRGLA 1058 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 I +II MA+ ++ ++A+ I E + L + GCDY Q P+ + Sbjct: 1059 HDPNDREIAATIIAMARGLKLGVLAEGIESEQQLDFLRQQGCDYYQGFLFHRPVPAIELE 1118 Query: 951 KLLKER 956 L+E Sbjct: 1119 AWLREH 1124 Score = 92.3 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 90/268 (33%), Gaps = 15/268 (5%) Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 H + + + L + P TA + + + + + + Sbjct: 153 HLAQHAPHLHLTAMTSAQDALALLPV---NPDQTADFDIVLVDYCLSGGMDGLEFIRLLR 209 Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 ER L IP ++ + D + L + + + Sbjct: 210 EER-KLDIPIVLITRQGSEMIAARALHLGVEDYLSRHEGY---LFEVPATLEKARWLAEL 265 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIR 450 + R S + S ++++ + V + +I ++G G Sbjct: 266 TRERINLKQTNLRLSHLLAASPMVLYNLRFTGNVLQPVWVSENIERLIGYTPGEALA-PG 324 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 WL +++ +DR+ + G+L +++R D + W++ +R + N++G Sbjct: 325 WWLSHLYPDDREQVLERQPILLS--DGQLTHDYRFYHRDGRIIWILDELRLIRNADGQPH 382 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNL 538 +G DI+E K++ ++ A Q L Sbjct: 383 EVVGTWLDISEHKQA--ELIRQAHQSAL 408 >gi|307822698|ref|ZP_07652929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307736302|gb|EFO07148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 1183 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 140/558 (25%), Positives = 250/558 (44%), Gaps = 12/558 (2%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464 R + S + + D + G G + L H + Sbjct: 630 RIAAVAFESQEAMVITDTTSVILRINKAFTESTGYTEEEAVGQKISILKSGRH--GAAFY 687 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + G Q E R + + + + I + S+G + Y+G DITE+K Sbjct: 688 AAMWKGILS--VGAWQGEIWDRRKNGEIYPKWLSITAVKGSDGVVSHYVGTHTDITERKA 745 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + E I AF D LT +PNR+ +RL +++ D + ++++D+D++K IND LG Sbjct: 746 AEEQIKLLAFYDPLTRLPNRRLLQERLKHGINVERRDGK-QLGLLMLDLDRFKAINDSLG 804 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GDD+L + RI L+ D++ARL G+ F ++L A A + + P Sbjct: 805 HLAGDDLLQQVAERIKARLRDVDMVARLGGDEFIVLLEDIAQPEDAARVAKEIIADLTKP 864 Query: 645 INL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701 L + + SIG + + TS ++ +A+ A+Y AK G F Sbjct: 865 FCLTHSDNVQIGVSIGISLYPQHGDTSELLMDHADAALYQAKDAGRGCFAYFSEDLTIAA 924 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +R+ ++ L A+E EL + + P + + IVG EAL++W P G I F+ IA Sbjct: 925 RERIALETRLRHAIEQQELRVFFQPQVDIASGRIVGAEALVRWQDPVEGLIPPIRFIPIA 984 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I + ++L R W D PP+ + +N++S +++C + ++S T Sbjct: 985 EETGLIVEVGEWVLRETCRQGRQWLDAGL-PPLTLAVNVSSHQFRRSDICALVATVLSDT 1043 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + +++L +ES +M N + + +L LR G+ L +DDFGT S L+YL + P D + Sbjct: 1044 GFPSQQLELEITESGLMENQDNATAILNSLRAQGVRLAIDDFGTGYSSLAYLKHFPLDVL 1103 Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + + I +I+ M + ++A+ + + L GCD Q Sbjct: 1104 KIDKRFIDDIPFQQDDMEIAATIVAMGHILGFKVLAEGVETMAQLAFLQEKGCDMYQGYI 1163 Query: 940 VASPLGFNSILKLLKERF 957 + P+ + +LL+ + Sbjct: 1164 KSKPVPAHEFAELLRAQQ 1181 Score = 113 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 49/384 (12%), Positives = 114/384 (29%), Gaps = 32/384 (8%) Query: 165 ISTPNLPQ---IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + T + YLW P + S ++ + L Y V + + L Sbjct: 10 VGTSSFMPHGACYLWLPPMLWLHIISDSIIAIAYFSIPFAL------LYFVKKRTDLAYR 63 Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL-------H 274 + + L + + + + L+++L+ + L Sbjct: 64 WVFVLFGVFICLCGTTHLISIWTI---WHPDYWLDGLVKLATALVSIVTALLIWPLIPKL 120 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM--- 331 + + + + I + I + L G+ Sbjct: 121 LRLPSPQALQTSETYLRAIFDATPDAMLISNEHGIITMANQQAERLLGYSINELLGLSIE 180 Query: 332 ----KGYERAVLLIPAWILIFIW----FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 + + A + G + + ++ +++ + + L Sbjct: 181 TLVPESFRAAHPGLRTQFAAVAVTRPMGAGQTVKVLRKDGSELDVEISLSPIRTEQGLFF 240 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + ++ + + + ER S ++W + + G S Sbjct: 241 ASALRDITERKQAEATLRASEERFRRMANSSPIMIWITNAEGEPTFVNQSWLDFTGFDSM 300 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 +W+ IH +DR+ + + E+R+R A + W++ + P+ Sbjct: 301 QTM-THGDWISSIHPDDRETAFVAYYQNTEVQAA-ITTEYRLRNATGDWRWILDKGMPLY 358 Query: 504 NSNGDILRYIGIANDITEQKKSLE 527 + +G YIG A DITE+K+ E Sbjct: 359 DESGVFNGYIGSAIDITERKQVQE 382 Score = 88.9 bits (219), Expect = 4e-15, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 55/144 (38%), Gaps = 1/144 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + S + + W ++ ++ + ++ I G+A Sbjct: 368 IGSAIDITERKQVQEILQDKEQMLSESQRIAHVGSWSMELATGCISWSDEMYRIFGVAQQ 427 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + ++ +L I+ +DR + L + + + +F +R D ++ Sbjct: 428 TFGLSLKTFLDLIYPDDRAAMKRWLSDCRAGKESQ-ELDFHIRLPDGAVRFIRGSGGLQY 486 Query: 504 NSNGDILRYIGIANDITEQKKSLE 527 + LR +G A DITE+K++ Sbjct: 487 DEMNRPLRMVGSAQDITERKQAER 510 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 14/154 (9%) Query: 386 VIQHVLATGYFSQGIFSDGE------RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + L +Q I + + + S D W D++ + + A I+G Sbjct: 488 EMNRPLRMVGSAQDITERKQAERVLNQIKAMIDISLDGFWVADLMGNVLQANEAYAKIIG 547 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + + + L + + + V E R D + + Sbjct: 548 YSIDELVNMRISQLEA--KEGSEQIKAHIVKIVTQGYDLF--ETRHLHKDGHTIDIEVSA 603 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 +S + ++ DITE+K+ + A Sbjct: 604 AFLS----EFQQFCVFCRDITERKRIEMDLRIAA 633 >gi|224826492|ref|ZP_03699593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] gi|224601093|gb|EEG07275.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] Length = 836 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 142/554 (25%), Positives = 269/554 (48%), Gaps = 13/554 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI--HINDRDNFRTI 467 + + + D + P I G ++ G L ++ Sbjct: 286 VFESTLEGIAITDGAGIIQSVNPAFERITGYSAQESIGKTPALLKSGKQPPEFYEHLWHS 345 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L R G Q E R + + + I + NG+ Y+ + +DIT++K++ E Sbjct: 346 LK-----RDGVWQGEVINRRKNGLLYTEHLSITGIRGDNGEYAHYVAVFSDITQRKQAEE 400 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A D LTG+PNR FL+RL ++ + + R ++ ID+D++K +ND LG Sbjct: 401 RLHFLANHDALTGLPNRTLFLERLEAGVEQA-REFGQRMALLFIDLDRFKLVNDTLGHHA 459 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD++LV + + ++ ++ARLSG+ F +++ + ++ ++A A ++ +IA + Sbjct: 460 GDELLVWIAEEMRKVAPPLAMVARLSGDEFTLLMPAVDSVQQVASRAQSVLDAIAGETVV 519 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705 +E+ V+ASIG + + ++ +L NA+ AMY AK RG ++ + + S +R+ Sbjct: 520 AGQEVFVSASIGISMFPEDGASADVLLVNADTAMYRAKERGKSNFQFYTPDMNASALERL 579 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ L A+ EL + Y P + L + G EALI+W HP+ G +S + F+ IAE+ Sbjct: 580 RLEYSLHKALAQDELEVWYQPKVELATGRLDGAEALIRWRHPELGLVSPARFIPIAEDSS 639 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++L+ R + WR++ + +N++ + L + E ++ + + Sbjct: 640 LIVPIGEWVLKTACRQVREWRERRLFGG-RVAVNVSGRQLKFAGVVELVERTLEECGLPS 698 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S ++L +ESV M +L RL ++G+ L++DDFGT S LSYL +P +K + Sbjct: 699 SALELEITESVAMDEDSGMVEVLRRLHELGVYLSIDDFGTGYSSLSYLKRLPVHGLKIDQ 758 Query: 886 SLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + + AI ++II +A+++ ++A+ + + + L GC Q + P Sbjct: 759 SFVADLHQNRDDAAITQAIISIARSLGLGLVAEGVELDEQRRYLVEQGCGTGQGYLFSRP 818 Query: 944 LGFNSILKLLKERF 957 L LL+ + Sbjct: 819 LPAAEFEALLEREY 832 >gi|224824691|ref|ZP_03697798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] gi|224603184|gb|EEG09360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] Length = 1086 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 147/583 (25%), Positives = 270/583 (46%), Gaps = 18/583 (3%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 +IG V +Q + S + + + + I G Sbjct: 506 AIIGVVVDISDRVQADANQKLASK------VFENAAEGILITGADYRIIAVNQAFTRITG 559 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G + I ++ +LD + G Q E R ++++ + I Sbjct: 560 YPPELVIGRV----SRIFRDNTSWSVAMLDGLARH--GHWQGEMLDRRRSHEWYPAELSI 613 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + G I Y+G+ DIT +K++ E + A D LT +PNR + L + A Sbjct: 614 SAVRDDAGAITNYVGVFADITVRKQAEERLQFLANHDPLTRLPNRSWLIACLEDRIQQIA 673 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + + VM +D+D++K IND G GD++L R+ +++ +ARL G+ F + Sbjct: 674 SSGQ-QVAVMFLDLDRFKLINDSFGHQTGDELLRETASRLEQVVGGRGQIARLGGDEFTL 732 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 ++ + ++ A + +A P+ L +E+ VT S+G + + + +LKNA++ Sbjct: 733 LVSHFASQATLSTLAEDILAVLAQPLWLEGQELIVTGSLGISVYPHDGSDARTLLKNADV 792 Query: 680 AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G N + F +++ +R+ ++ L A+E E L + PI+ + Sbjct: 793 AMYRAKEAGKNTYQFFAAEMNAQAIERLQLERGLRQALERGEFELHFQPIVAAATYRLEA 852 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 LE L++W HP+ G +S F+ +AEE +I+ I +++ + R + W P + Sbjct: 853 LEVLLRWRHPELGLVSPVRFIPLAEETGLIRPIGDWVIRQACRQLAEWDCLGLHVP-RLA 911 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN++++ L + +++ + R++L +ES+VM NP + LLG L+ +G+ Sbjct: 912 INLSARQFEQQGLIMQVAGALAEAGIAAGRLELEMTESMVMQNPSEAVSLLGELKALGVR 971 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L++DDFGT S LSYL P DT+K + S + G AI +I+ MA+ + +++A Sbjct: 972 LSIDDFGTGYSSLSYLKRFPLDTLKIDRSFIEGLPGDGDNAAIAEAILAMARKLSFSVVA 1031 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + + E L GC +Q + PL + L++R P Sbjct: 1032 EGVETEAQAAFLCAKGCQLLQGYLFSRPLPAAELPAFLQQRSP 1074 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 76/260 (29%), Gaps = 20/260 (7%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA------ 337 + +A +L + + + + + L I L + + G+ Sbjct: 143 LLQCGALALALVLCVPAAFAGVEYSRRRYLELLLIALVTLALWVAVFVAGHVSLVPIHLL 202 Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDND----------IIQPALVGGLVLIVILIGFTVI 387 + W G + L + PA L L ++L V Sbjct: 203 LYPCLLWAACRAGIGGATLLGLLILVLATFLDGPSFQPVPLPANGIVLNLALVLSAQLVA 262 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 A + + R + S +++ D+ + + LG A + G Sbjct: 263 TQSEAAARRIRQLQDSLARFEAWLRNSPNVMSLKDLEGRYLLVNRAYSRALGKAPAELIG 322 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 ++ + D V QYE + D ++ P+ +++G Sbjct: 323 KKSA--DFLPPEE-ARATAEQDRQVLSALESRQYE-QTLTLDGLPGDFLVTKFPLFDADG 378 Query: 508 DILRYIGIANDITEQKKSLE 527 IA DIT+ K+ + Sbjct: 379 LPAGIGCIATDITQNKRERQ 398 Score = 61.1 bits (147), Expect = 9e-07, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 51/173 (29%), Gaps = 6/173 (3%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + + ++ + + IG + + Q R + S Sbjct: 356 TLTLDGLPGDFLVTKFPLFDADGLPAGIG-CIATDITQNKRERQAKQEAENRYHALIEQS 414 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 ++ +A +LG + G + +R R + + Sbjct: 415 LVGIYILQ-DECLAYVNDKLAEMLGYPGEELQG--ERIETVLAHEERQRLRQQITQRLSE 471 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + R+ D Q + I R + G IG+ DI+++ ++ Sbjct: 472 NISIMHFSARLVRKDGQLLDVEIHSR-LFEYRGR-SAIIGVVVDISDRVQADA 522 >gi|169830141|ref|YP_001700299.1| putative signaling protein [Lysinibacillus sphaericus C3-41] gi|168994629|gb|ACA42169.1| Hypothetical signaling protein [Lysinibacillus sphaericus C3-41] Length = 906 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 142/568 (25%), Positives = 274/568 (48%), Gaps = 16/568 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMH 446 + + Q + + E L + +G+ ++ D+ R+ P A +LG + + Sbjct: 347 KELERVVAELQQLSREKE---LILNSAGEGIFGLDLDRNITFCNPAGALMLGYETDRDLI 403 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G + I + F+ + FR D+ + + + + Sbjct: 404 GKS---VEIIMSGCEAEVNIPVSPFLNTNFNSYEVFFR---KDHTYFPVEYVTSFIKEGD 457 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 ++ + DIT++K+ E I +A+ D+LT +PNR LDRLT L + + + Sbjct: 458 -KVVGEVITFKDITQRKQLEEKIKYHAYFDSLTDLPNRVLLLDRLTQGLKYAKVNGE-KL 515 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ +D+D++K +ND LG + GD +L S+ +R+ + ++R G+ F I L + Sbjct: 516 AVLYLDLDRFKLVNDSLGHSYGDLLLQSVAKRLSACVPEDATVSRQGGDEFTIYLPNIKC 575 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 I + S + P NL++ EI + SIG + + + T+ ++KNA+ AMY +K Sbjct: 576 ENDILKVINCINASFSQPFNLIDNEIYIKTSIGISLFPENGDTTDTLIKNADTAMYKSKE 635 Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G F + + + + ++ DL A+E EL + Y P I +I G+EAL++W Sbjct: 636 TPGTSYHFFSEGMDTRTFESIKLENDLYKALERDELMIFYQPQINYKTNKIKGVEALLRW 695 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 +H + G I+ +F+ +AEE +I I ++L+ + + W +Q P I + +N++ Sbjct: 696 NHREHGMITPDKFIPLAEETGLIVPIGEWVLKEACKQLKEWHNQ-GFPLISMSVNLSVHQ 754 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 N L ++ ++ + SP ++L +E++++ N E + + +L+ +G++L +DDFG Sbjct: 755 FEQNNLFSIIENVLHEADLSPEYLQLELTENLIVKNTEVTLKTMKQLKGLGVNLAIDDFG 814 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 T S L YL +P T+K + S + T+ AI +II +A+N++ +IA+ + + Sbjct: 815 TGYSSLGYLKNLPISTLKIDKSFVQEMLTDDAAAITNTIITLAQNLKLEVIAEGVETKEQ 874 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951 L C +Q + P+ I+K Sbjct: 875 ADYLLVQNCHLMQGYFFSKPMKAGEIMK 902 >gi|296159333|ref|ZP_06842158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Burkholderia sp. Ch1-1] gi|295890317|gb|EFG70110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Burkholderia sp. Ch1-1] Length = 932 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 152/578 (26%), Positives = 260/578 (44%), Gaps = 14/578 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + ++ + E+ + +W W P + G Sbjct: 334 RAIRLASEMTRELRESEEKFRAIADCTVNLEIW-WGPDGKPRWINPSVEHYTGYTVAECM 392 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 IH +D + + RG EFR D W+ + P+SN+ Sbjct: 393 AMPNFARTLIHPDDVERVAPEFQKGLQGFRGD-DLEFRCVRKDGSLLWLSLSWVPISNAR 451 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 GD + + DITE+KKS E I AF D LT +PNR LDRL + ++ ++N+ Sbjct: 452 GDFVGFRTSGRDITERKKSEEKIRELAFYDTLTRLPNRALLLDRLRESMA-ASRENNVCG 510 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN- 625 +M ID+D +K +ND LG GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 511 ALMFIDLDHFKTLNDTLGHDKGDLLLRHVAYRLSSSVSKGDTVARVGGDEFVVVLGNLSL 570 Query: 626 ----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + + + L + TASIG + + + ++ E+ K A+LAM Sbjct: 571 NKAAATAETEAVGEKILAVLGRAYELNGVQFRSTASIGVTVFDAEQTSTDELFKQADLAM 630 Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y +K RG N + F + + R ++ LC A+E + L Y + + + I G E Sbjct: 631 YKSKERGRNAMCFFDPAMQTTVLKRAELEVGLCNAIEENRFVLHYQAQV-VDGDHITGAE 689 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP G I +EF+ +AEE +I I +LE + W Q M + I +N Sbjct: 690 ALVRWEHPVCGLIPPAEFIPLAEETGLILEIGRMVLESACAQLALWATQPQMAHLSIAVN 749 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++++ + + E + +I++ R+KL +ESV++ N E +G LR G++ + Sbjct: 750 VSARQFREPDFVESVLDVINRKGARADRLKLELTESVLVENVEDIIEKMGALRARGVTFS 809 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 LDDFG S LSYL +P D +K + S + I R+I+ +A++ + +IA+ Sbjct: 810 LDDFGIGYSSLSYLKRLPLDQLKIDRSFVRDILEDPNDADIARTIVALARSFDLGVIAEG 869 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + E L GC Q PL S + + Sbjct: 870 VETEAQRDFLAVAGCHAYQGFLFCKPLPVRSFEQFVAS 907 >gi|22299155|ref|NP_682402.1| hypothetical protein tlr1612 [Thermosynechococcus elongatus BP-1] gi|22295337|dbj|BAC09164.1| tlr1612 [Thermosynechococcus elongatus BP-1] Length = 1292 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 142/566 (25%), Positives = 267/566 (47%), Gaps = 8/566 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ER L + DI+ D + +P T+LG + ++ G + Sbjct: 725 ERKATELALRESEERYRLLAENTSDIICLLDCQGSCLYVSPSYETLLGWPTETLIG--EH 782 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + H +R + L + R+ ++V A W+ ++P +S G + + Sbjct: 783 FTQLCHPEERSRVKQELQQMIEQRQ-FWPITYQVCTARGDVLWLETLVKPRYDSQGHVQQ 841 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + D+T + + + +A+ D+LTG+PNR F+++L + + T+ V+ Sbjct: 842 LQTTSRDVTSRVQVQMQLHHDAYHDSLTGLPNRLYFMEQLAAAISQAQTNPQFHYAVLFF 901 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD VL++ + L+ +AR G+ F I+L + + Sbjct: 902 DLDRFKVINDSLGHGVGDQVLIAFATWLRRLVGNQYTVARFGGDEFVILLTHVPHPQRAI 961 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + S+ P+ + ER+I ++ SIG + T +L++A+ AMY AK + G Sbjct: 962 ALCEELIHSLQQPLRVGERQIFLSTSIGVVFAQNEYETGMAVLRDADTAMYAAKRQSGRR 1021 Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F +R+ ++ DL A+ L L+Y P++ L + +VG+EAL++W HP+ Sbjct: 1022 YAVFDTQMYEQVLERLHLEHDLRQALNQGGLQLLYQPVVHLQSQRLVGMEALVRWQHPER 1081 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDN 808 G +S + F+ IAE+ +I A++ + L + + +WR Q + + + +N+++K L D Sbjct: 1082 GLVSPAHFIPIAEDTGLIVALDQWALAQACWQLWTWRQQYSTAANLVLSVNVSAKTLQDP 1141 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + + + ++ L +E + + LL LR + +++DDFGT S Sbjct: 1142 TFLQHLDTIRQRYPLPKGQLLLELTERIGIELGSEMLSLLESLRHRHVEISIDDFGTGYS 1201 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL +P +K + S ++ E I+R I+ ++K + +IA+ I ++ Sbjct: 1202 CLSYLHSLPIQHLKVDRSFVSQLEENERNLQIIRMILLLSKQLGYRVIAEGIETPKQLQI 1261 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952 L +GCD Q A PL + L Sbjct: 1262 LQELGCDEGQGYLFARPLPPETFASL 1287 Score = 119 bits (298), Expect = 3e-24, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 19/202 (9%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLI-----------VILIGFTVIQHVLATGYFSQ 398 + +T I G + + ++ TVI V Sbjct: 544 SVLRSAETLTPWFAQWRIIHPTTGEIRWLEGAGQPTRDADGAVVWHTVILDVTDRHLAEA 603 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + LA S + D+ +P LG + + + +W +H Sbjct: 604 RLKEQQAQLELAARVSNIGFYFCDLHTGTFYVSPSYKAQLGYPATTQEVNLEDWEERLHP 663 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 DRD F+ + R+R + + W + + G + +G D Sbjct: 664 EDRDRALAAYRQFLRGE-AHYSIDLRLRHCNGTYRWFHSEAVLIHDEQGQPSKVVGTNVD 722 Query: 519 ITEQK-------KSLEGILCNA 533 ITE+K +S E A Sbjct: 723 ITERKATELALRESEERYRLLA 744 Score = 81.9 bits (201), Expect = 5e-13, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 60/210 (28%), Gaps = 13/210 (6%) Query: 334 YERAVLLIPAWILIFIWFIGLWMAIT--KRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 + A LLIP + +W I A L V + T+ Q Sbjct: 401 FPGAWLLIPLIVADRVWGSLTLFNYPEPHEWSRTEIDLARAVATQLEVAIYQATLYQQAQ 460 Query: 392 A----TGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGLASG 443 + E L ++ + D P + G+ + Sbjct: 461 QELAERRRIEATLRQSEECFRLTATNVPGAIFRYIQYPDGRNRVFYLNPMCERLWGVPAE 520 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPM 502 + + +H DR+ + +R+ + W+ +P Sbjct: 521 AAAEDGEHLWQLVHPEDREATWQSVLRSAETLTPWFAQ-WRIIHPTTGEIRWLEGAGQPT 579 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532 +++G ++ + + D+T++ + + Sbjct: 580 RDADGAVV-WHTVILDVTDRHLAEARLKEQ 608 Score = 56.9 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 32/132 (24%), Gaps = 3/132 (2%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + R + D+V + + G W ++ D Sbjct: 171 QAQANRYYEILQSQSDLVLCSRADTTITFANDAFCQFFSRPASVVIGCP--WSEFVLAED 228 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + E RV W + ++ G++ + DIT Sbjct: 229 LPPLLEKVAQ-LRPDAPTFVNENRVYHPQYGLRWTQWMNTAIFDAEGNLREIQSVGRDIT 287 Query: 521 EQKKSLEGILCN 532 K+ L Sbjct: 288 ALKEQLLREQAL 299 Score = 45.3 bits (106), Expect = 0.051, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 5/144 (3%) Query: 396 FSQGIFSDGERQSLA-VLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWL 453 + D E A + V +D+ + V P +LG+ + I L Sbjct: 27 LQGRVGYDLEHYLAAVLSVLPVGVALYDVTGEIVYMNPAGRALLGVEDPATTASQICADL 86 Query: 454 PYIH-INDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + +DR + L + + E V+ D Q + ++ P+ N G + Sbjct: 87 RIFYCGSDRPYPKDELPGIQALQGLTVPPMELEVQYGDRQL-TVEVQASPILNPAGQVEF 145 Query: 512 YIGIANDITEQKKSLEGILCNAFQ 535 I +IT +K+S Sbjct: 146 SISTFWEITARKRSELEQQILKNY 169 >gi|319427966|gb|ADV56040.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens 200] Length = 1502 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 140/551 (25%), Positives = 268/551 (48%), Gaps = 11/551 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + + V + + P + I G + + + + R+ F +I Sbjct: 953 VLNSMNEAVVVAGLDYKIRSVNPAFSAITGYSERQITDKY--LVHLAYKQQRELFNSIEQ 1010 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + ++ E +R + + + I + + G+ ++ + DITE+KK+ + + Sbjct: 1011 QLLRHK--HWVGEIWIRNKQRKAILVWLEINQVIDIKGETSHFVAVFTDITERKKAEQDL 1068 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G VGD Sbjct: 1069 RFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGHHVGD 1127 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L + +R+ ++ D +ARL G+ F IIL + + + ++ P L + Sbjct: 1128 LLLKAAAKRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPFLLED 1187 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707 + +T++ SIG + + + + ++K A+ AMYHAK G N+ + + + Sbjct: 1188 KSLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFYTHKLNEIATRHVLL 1247 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L A+ +EL LVY P L D + GLEAL++W H + G IS EF+ +AEE +I Sbjct: 1248 EAGLKQAIHRNELSLVYQPKFSLRDGSLTGLEALLRWHHTELGPISPVEFIPLAEETGII 1307 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I +++ + + W I + +N++++ L ++ ++ ++ + Sbjct: 1308 NQIGHWVINHACQQLAEWNALGFN-NISMAVNLSARQLK-ADIISTIEVALAVSGLPAQS 1365 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K + Sbjct: 1366 LELELTESMIMGNPQDSVSILSKLKALGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1425 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI +II +A ++E ++A+ + + + L GCD +Q ++ PL Sbjct: 1426 VRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQAQLNFLGLQGCDEVQGFLLSKPLS 1485 Query: 946 FNSILKLLKER 956 L LL + Sbjct: 1486 AKDCLTLLGNQ 1496 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 7/175 (4%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + + ++I Q F I + ER L Sbjct: 773 TLLVNLKVQAPFYRTPFAYTLYCLLAIGLLIWGLHWRKQKRQQQREFETSIRASEERLKL 832 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A+ SGD +WDW+I ++V T A++ +S ++ +H DR+ F+ L Sbjct: 833 ALWASGDGMWDWNIKENKVYRTNMDASVSHWSSHNLLH------ENMHPEDREKFKYELA 886 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523 + R + E+R+ A ++ W++ R + + ++++ +R G +IT +K Sbjct: 887 EHLQGRTPFFEIEYRIEGAFGKWIWILDRGKVVETDAHMQPMRMTGTNRNITSRK 941 >gi|280984553|gb|ACZ99253.1| putative diguanylate cyclase/phosphodiesterase [Pseudomonas putida] Length = 631 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 149/623 (23%), Positives = 281/623 (45%), Gaps = 15/623 (2%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A+ ++ + + + + + L L + + V VL+ ++ + +L Sbjct: 13 ALYVVLSILWLALAEVMLHSMTDDPLALTVGRQINVVVWVLLSAVLIYVSRVRLLNFIGH 72 Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451 + D ER +A + + V D V I G + G Sbjct: 73 GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQHDEVIGQRPSK 132 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + H ++ I + +G E R + + I + + G++ Sbjct: 133 FKSGRH--GLAFYQEIFATLAE--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSH 188 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ + +DI+ K S + + A D LTG+PNR F DR+ L + + ++++ Sbjct: 189 YVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRVEQALAAAQANKRG-CALLLL 247 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D ++ IND LG +GD +L + R+GE+L LARL G+ FG++ + + Sbjct: 248 DLDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGMTLARLGGDEFGVLAENCQQVGQAG 307 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + + + P + ++AS+G + + S + + ++L+NA+ A+Y AK G Sbjct: 308 KLAQCIIERMREPFQFEGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRAC 367 Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + ++ +L A+E EL + + P+ L VG+EAL++W HP Sbjct: 368 YALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLATGRQVGVEALVRWQHPGR 427 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + SEF+ IAE +I I+ ++L++ R ++ W+ + F+ +NI+S+ +E Sbjct: 428 GLVPPSEFIPIAERTGLIAEIDTWVLQQACRQMVQWQAEGRQLA-FVGVNISSRLFGQHE 486 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ T +P+ ++L +ES VM +PE + L RLR++G++L +DDFGT S Sbjct: 487 LYRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSS 546 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L L +P +K + + G E IAI+R II +A+++ + A+ I L Sbjct: 547 LLRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFL 606 Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950 + C Q P+ + Sbjct: 607 LQEECQLGQGYWFGRPVPAADLR 629 >gi|148545489|ref|YP_001265591.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148509547|gb|ABQ76407.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida F1] Length = 631 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 149/623 (23%), Positives = 283/623 (45%), Gaps = 15/623 (2%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A+ ++ + + + + + L L + + V VL+ ++ + +L Sbjct: 13 ALYVVLSILWLALAEVMLHSMTDDPLALTVGRQINVVVWVLLSAVLIYVSRVRLLNFIGH 72 Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451 + D ER +A + + V D V I G + G Sbjct: 73 GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSK 132 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + H ++ I + +G E R + + I + + G++ Sbjct: 133 FKSGRH--GLAFYQEIFATLAE--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSH 188 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ + +DI+ K S + + A D LTG+PNR F DR+ L ++ + ++++ Sbjct: 189 YVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRVEQALAVAQANKRG-CALLLL 247 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D ++ IND LG +GD +L + R+GE+L LARL G+ FG++ + + Sbjct: 248 DLDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGMTLARLGGDEFGVLAENCQQVGQAG 307 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + + + P + ++AS+G + + S +++ ++L+NA+ A+Y AK G Sbjct: 308 KLAQCIIERMREPFQFEGNRLFISASVGISLFPSDALSAEQLLRNADSALYKAKSNGRAC 367 Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + ++ +L A+E EL + + P+ L VG+EAL++W HP Sbjct: 368 YALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLATGRQVGVEALVRWQHPGR 427 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + SEF+ IAE +I I+ ++L++ R ++ W+ + F+ +NI+S+ +E Sbjct: 428 GLVPPSEFIPIAERTGLIAEIDTWVLQQACRQMVQWQAEGRQLA-FVGVNISSRLFGQHE 486 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ T +P+ ++L +ES VM +PE + L RLR++G++L +DDFGT S Sbjct: 487 LYRQIAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSS 546 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L L +P +K + + G E IAI+R II +A+++ + A+ I L Sbjct: 547 LLRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQTEQASFL 606 Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950 + C Q P+ + Sbjct: 607 LQEECQLGQGYWFGRPVPAEDLR 629 >gi|120600574|ref|YP_965148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. W3-18-1] gi|120560667|gb|ABM26594.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. W3-18-1] Length = 1511 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 140/551 (25%), Positives = 268/551 (48%), Gaps = 11/551 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + + V + + P + I G + + + + R+ F +I Sbjct: 962 VLNSMNEAVVVAGLDYKIRSVNPAFSAITGYSERQITDKY--LVHLAYKQQRELFNSIEQ 1019 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + ++ E +R + + + I + + G+ ++ + DITE+KK+ + + Sbjct: 1020 QLLRHK--HWVGEIWIRNKQRKAILVWLEINQVIDIKGETSHFVAVFTDITERKKAEQDL 1077 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G VGD Sbjct: 1078 RFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGHHVGD 1136 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L + +R+ ++ D +ARL G+ F IIL + + + ++ P L + Sbjct: 1137 LLLKAAAKRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPFLLED 1196 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707 + +T++ SIG + + + + ++K A+ AMYHAK G N+ + + + Sbjct: 1197 KSLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFYTHKLNEIATRHVLL 1256 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L A+ +EL LVY P L D + GLEAL++W H + G IS EF+ +AEE +I Sbjct: 1257 EAGLKQAIHRNELSLVYQPKFSLRDGSLTGLEALLRWHHTELGPISPVEFIPLAEETGII 1316 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I +++ + + W I + +N++++ L ++ ++ ++ + Sbjct: 1317 NQIGHWVINHACQQLAEWNALGFN-NISMAVNLSARQLK-ADIISTIEVALAVSGLPAQS 1374 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K + Sbjct: 1375 LELELTESMIMGNPQDSVSILSKLKALGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1434 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI +II +A ++E ++A+ + + + L GCD +Q ++ PL Sbjct: 1435 VRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQAQLNFLGLQGCDEVQGFLLSKPLS 1494 Query: 946 FNSILKLLKER 956 L LL + Sbjct: 1495 AKDCLTLLGNQ 1505 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 7/175 (4%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + + ++I Q F I + ER L Sbjct: 782 TLLVNLKVQAPFYRTPFAYTLYCLLAIGLLIWGLHWRKQKRQQQREFETSIRASEERLKL 841 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A+ SGD +WDW+I ++V T A++ +S ++ +H DR+ F+ L Sbjct: 842 ALWASGDGMWDWNIKENKVYRTNMDASVSHWSSHNLLH------ENMHPEDREKFKYELA 895 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523 + R + E+R+ A ++ W++ R + + ++++ +R G +IT +K Sbjct: 896 EHLQGRTPFFEIEYRIEGAFGKWIWILDRGKVVETDAHMQPMRMTGTNRNITSRK 950 >gi|146294731|ref|YP_001185155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens CN-32] gi|145566421|gb|ABP77356.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens CN-32] Length = 1511 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 140/551 (25%), Positives = 268/551 (48%), Gaps = 11/551 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + + V + + P + I G + + + + R+ F +I Sbjct: 962 VLNSMNEAVVVAGLDYKIRSVNPAFSAITGYSERQITDKY--LVHLAYKQQRELFNSIEQ 1019 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + ++ E +R + + + I + + G+ ++ + DITE+KK+ + + Sbjct: 1020 QLLRHK--HWVGEIWIRNKQRKAILVWLEINQVIDIKGETSHFVAVFTDITERKKAEQDL 1077 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+PNR F DRL + + +N+ ++ +D+D++K IND +G VGD Sbjct: 1078 RFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGHHVGD 1136 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L + +R+ ++ D +ARL G+ F IIL + + + ++ P L + Sbjct: 1137 LLLKAAAKRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPFLLED 1196 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707 + +T++ SIG + + + + ++K A+ AMYHAK G N+ + + + Sbjct: 1197 KSLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFYTHKLNEIATRHVLL 1256 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L A+ +EL LVY P L D + GLEAL++W H + G IS EF+ +AEE +I Sbjct: 1257 EAGLKQAIHRNELSLVYQPKFSLRDGSLTGLEALLRWHHTELGPISPVEFIPLAEETGII 1316 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I +++ + + W I + +N++++ L ++ ++ ++ + Sbjct: 1317 NQIGHWVINHACQQLAEWNALGFN-NISMAVNLSARQLK-ADIISTIEVALAVSGLPAQS 1374 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +ES++MGNP+ S +L +L+ +G+++ +DDFGT S LSYL P DT+K + Sbjct: 1375 LELELTESMIMGNPQDSVSILSKLKALGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1434 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI +II +A ++E ++A+ + + + L GCD +Q ++ PL Sbjct: 1435 VRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQAQLNFLGLQGCDEVQGFLLSKPLS 1494 Query: 946 FNSILKLLKER 956 L LL + Sbjct: 1495 AKDCLTLLGNQ 1505 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 7/175 (4%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + + ++I Q F I + ER L Sbjct: 782 TLLVNLKVQAPFYRTPFAYTLYCLLAIGLLIWGLHWRKQKRQQQREFETSIRASEERLKL 841 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A+ SGD +WDW+I ++V T A++ +S ++ +H DR+ F+ L Sbjct: 842 ALWASGDGMWDWNIKENKVYRTNMDASVSHWSSHNLLH------ENMHPEDREKFKYELA 895 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523 + R + E+R+ A ++ W++ R + + ++++ +R G +IT +K Sbjct: 896 EHLQGRTPFFEIEYRIEGAFGKWIWILDRGKVVETDAHMQPMRMTGTNRNITSRK 950 >gi|288957506|ref|YP_003447847.1| signaling protein [Azospirillum sp. B510] gi|288909814|dbj|BAI71303.1| signaling protein [Azospirillum sp. B510] Length = 1077 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 136/553 (24%), Positives = 243/553 (43%), Gaps = 16/553 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR--DNFRTI 467 + + ++ + R V + I G + G +L DR F Sbjct: 516 VFDNASEGMFVANDQRQIVAANDAFSRITGYGRDEVLGQGPGFLRS----DRNPPGFYAE 571 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L + + R G E + + + + N +G + YI DITE + E Sbjct: 572 LWAQLR-RDGHWAGEIWSTRKSGEVFPEWLSVTVVRNEDGAVANYIAAFTDITETRAQEE 630 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A D LT +PNR DRL + + + R ++ +D+D++K IND LG V Sbjct: 631 RIRHLAQFDFLTDLPNRFLLRDRLERAMLAAGRHGS-RVGLLFVDLDRFKTINDSLGHQV 689 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + R+ ++ D ++R G+ F I++ ++ A + +S++ P + Sbjct: 690 GDSLLREVAARLVGTVRASDTVSRQGGDEFIILIGDMDDGEAAGIVARKVLRSVSEPYLI 749 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 E+ VT SIG A + +LK+A++AMY AK G F R + Sbjct: 750 DGHELQVTPSIGIAIYPDDGTGIDALLKSADMAMYAAKEGGRATYRFFTPELNRRASDRL 809 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +L A+ N+EL L + P + ++G EAL++W P I +F+ +AE+ Sbjct: 810 WTENNLRRALANNELELHFQPQFSMDGRRLIGAEALVRWRQPDGTLIMPGQFIPVAEDTG 869 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I + ++L R + I +N+++ + L E + ++ Sbjct: 870 LILPLGDWVLGEACRRAAELMRHR---TLVIAVNLSAVQVRRPGLAERVAGWLAAYGVPS 926 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S ++L +ESV+M + +LR++G+ + +DDFGT S L+YL D +K + Sbjct: 927 SALELEVTESVLMDESDVVSETFAQLREMGVPVAIDDFGTGYSSLAYLKRFRVDKLKIDR 986 Query: 886 SLMTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S ++G AI +II MA+++ +A+ + E L R+GCD Q + Sbjct: 987 SFVSGLRAGNPDSGAIAEAIIGMARSLRMQTLAEGVETEEQYDCLARLGCDQCQGYLLGR 1046 Query: 943 PLGFNSILKLLKE 955 P+ + L L++ Sbjct: 1047 PMPYEEFLALVRR 1059 >gi|119776430|ref|YP_929170.1| sensory box protein [Shewanella amazonensis SB2B] gi|119768930|gb|ABM01501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella amazonensis SB2B] Length = 1494 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 140/553 (25%), Positives = 274/553 (49%), Gaps = 10/553 (1%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + + + V + + P + I G + G ++L H + + Sbjct: 944 AQVLASMNEAVVVGGLDYRIASVNPAFSLITGFNPEQVQGK--HFLFLTHDRKQRHIYEA 1001 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++ + R E ++R D + + + I + +S + ++ + DIT++KK+ E Sbjct: 1002 IEQQLL-RNKHWAGELKIRTRDQRAILIWLEINQVLDSKAEASHFVAVFTDITDRKKAEE 1060 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A D LT +PNR F DRL L + N+ ++ +D+D++K IND +G + Sbjct: 1061 DLRLLASYDPLTNLPNRTLFQDRLDHALAQAHRTGNM-VALLFLDLDRFKHINDSMGHHI 1119 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L ++ R+ ++ D +ARL G+ F IIL + A + ++ P L Sbjct: 1120 GDLLLKAVAHRLQNCVREGDTVARLGGDEFTIILEGVAKTKAATVIAEKLIRAFQTPFIL 1179 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRV 705 ++ + ++ SIG + + S+ ++K A+ AMYHAK G N+ + + R++ + V Sbjct: 1180 EDQALNISPSIGISLYPMDASDSTSLVKYADTAMYHAKSLGRNNFQFYTLRLNEYAMRHV 1239 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ + A+ EL LV+ P R+ D I G EAL++W+ + G IS +EF+ +AEE+ Sbjct: 1240 QLEAGIKQAIVRQELSLVFQPKFRVSDGSITGFEALLRWNSKELGPISPAEFIPLAEEIG 1299 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I + +++ R + + + + +N++++ L ++ ++ ++ Sbjct: 1300 IINQLGHWVVNEACRHMAQFAAAGFD-DLHVAVNLSARQLK-ADILSTIEVALAVAGLPA 1357 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++L +ES++M +P+ S +L RL+ +G+SL +DDFGT S L+YL P DT+K + Sbjct: 1358 KCLELELTESMIMKSPQESVAVLQRLKALGVSLAVDDFGTGYSSLAYLKRFPLDTLKIDR 1417 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + AI +II +A ++E ++A+ + E ++ L + GCD +Q + P Sbjct: 1418 EFVRDISTDPDDAAITGAIIALAHSLELNVVAEGVENEAQLEHLRKHGCDQVQGFLLGKP 1477 Query: 944 LGFNSILKLLKER 956 + + LLK R Sbjct: 1478 MAARDAMALLKSR 1490 Score = 126 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 10/185 (5%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSL 409 L + +T PA V + +V ++G+ F I + ER L Sbjct: 766 ILTVPLTVVAPWYRTPPAYVLYTLTLVAILGWFWRERRVKRRQRREFETSIRTSEERLKL 825 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A+ SGD +WDWDI +V T + ++GP+ L IH D+ ++ Sbjct: 826 ALWASGDGMWDWDIPSGQVFRT----RMHPHTEQQLNGPV--LLDRIHPEDKPRVLHAIE 879 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + R + E+R+ + W+ R + + + G +R +G DIT +K + Sbjct: 880 QHIDGSRAFYEAEYRIENKPGHWIWITDRGKVVERDKQGKPVRMVGTHKDITSRKNAENE 939 Query: 529 ILCNA 533 + +A Sbjct: 940 LRLSA 944 >gi|71908712|ref|YP_286299.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71848333|gb|AAZ47829.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 1038 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 137/565 (24%), Positives = 249/565 (44%), Gaps = 17/565 (3%) Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 E +A + + + + D + + G ++ G L Sbjct: 470 EARKADELMRIAAIAFETQEAMLVTDAKSQILRVNRAFTEVTGYSAAEAIGQTPALLKSG 529 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D +F L + + G + E R + + + + I + +G+I ++ Sbjct: 530 YHED--SFYKDLWTSLKE-NGLWRGEIWNRRKNGEIYPEWLTISAVRGQHGEITHFVSSF 586 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT++K++ E I A D LT +PNR+ +RL+ L S ++ ID+D + Sbjct: 587 LDITKRKEAEEQIQFLALYDPLTHLPNRRLLNERLSKALTSSGRQRR-HAALLFIDLDNF 645 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSLKIA 631 K IND +G +GD +L + R+ E ++ D ++RL G+ F I+L + + +I Sbjct: 646 KMINDSMGHDIGDLLLRQVALRLRESVRSNDTVSRLGGDEFVILLEELSPNIHDATTQIE 705 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A M S+ P E TASIG + + T +LK+A++AMY AK G N Sbjct: 706 HIAQKMLDSLVQPYKFGEFSHHCTASIGAIPFMDATETIESLLKSADMAMYKAKAAGKNR 765 Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F + ++ DL A + L P + + G EALI+W HP Sbjct: 766 LFFFDPAMQTEVEARAALERDLRQAQREKQFVLYLQPQVD-QSGHVSGAEALIRWQHPTH 824 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G I EF +AEE +I I ++LE + ++ W+ + + + IN+++ + + Sbjct: 825 GLILPGEFTHVAEETRLILPIGQWVLEEACKQLVIWQKNPDTAHLTLAINVSALQFRNPD 884 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR-KIGISLTLDDFGTKCS 868 + + I ++ SR+KL +ES+++ + + + + L+ ++G+ L+LDDFGT S Sbjct: 885 FVDDVARAIHESGALASRLKLEITESLLLEDIDGTIERMQVLKNQLGVGLSLDDFGTGYS 944 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL +P D +K + S + AI ++I + ++ +IA+ + Sbjct: 945 SLSYLKQLPLDQIKIDRSFVKDIHCNPNDAAIAEAVIALGRSFSLNVIAEGVETIEQRDA 1004 Query: 927 LTRMGCDYIQDSHVASPLGFNSILK 951 L GC Q P ++ Sbjct: 1005 LIARGCLTFQGYLFGRPGPIDAFPA 1029 Score = 65.7 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 15/174 (8%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 + + L L+L ++ + + + L ER SL + G+ V+ D Sbjct: 320 STQVVGGLSTLLILSMLAVAYLIRSKRLVGAALR-------ERASL-LDSLGEGVYGIDQ 371 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI----LDSFVGYRRGRL 479 P +LG + + G ++ + H D + + + + R Sbjct: 372 NGQCTFINPKALEMLGWTADEVIGSDQHARFHHHRPDGSIYPSADCPVYQTLRDGQ--RR 429 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 Q E D + + + P+S + DI+E +K+ E + A Sbjct: 430 QGEEWFFNKDGRGFPVQYSVTPISRQEDK-EGAVVTFRDISEARKADELMRIAA 482 >gi|127514652|ref|YP_001095849.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella loihica PV-4] gi|126639947|gb|ABO25590.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella loihica PV-4] Length = 830 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 133/573 (23%), Positives = 269/573 (46%), Gaps = 17/573 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 ++ + +R AV S +WDW++ + V + +LG + + Sbjct: 252 RFQQGAKQLKDSEQRWLFAVEVSRYGIWDWNLEDNSVFLSDRWKDMLGYGPEDLVPELAT 311 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDIL 510 W +H D++ L++++ + R+R + W++ R + N G L Sbjct: 312 WESRLHPEDKEGILKNLNAYLNGETEEFESVHRLRHQQGHYIWVLDRGMTVEWNEKGKPL 371 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 R IG +D+TE ++ + + A D LT + NR++ +D L + + + Sbjct: 372 RMIGTLSDVTEDIRNQKAAMHQAKHDPLTDLANRRALMD----ALYQQQDESGSCTALFM 427 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--- 627 +D+D +K +ND LG GD +L+ + R+ ++AR++ + F +++ Sbjct: 428 LDLDNFKVVNDALGHHGGDRLLIQIAARLSSYFSSNSLIARVAADEFVVLVKKLPEDLLG 487 Query: 628 --LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHA 684 + A MR+ IA ++ ++AS+G A S+ + LK +A+ A Sbjct: 488 AQRRAQALASQMRQLIARSFHISGHTFNLSASVGIAIIDPSETIPPEQQLKRVNMALAQA 547 Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G + + + + +MI+ +L AV +L L Y P++ EI +EAL+ Sbjct: 548 KESGRDACVVYSSEMDKRAAQNLMIRTELVHAVTRHQLSLFYQPLLNAK-GEIASVEALL 606 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G IS ++F+ +AE +I + ++L R I ++Q PP+ + IN+++ Sbjct: 607 RWHHPQHGAISPADFIPVAEGSALIVELGEWVLLEACRFIRGLQEQGIRPPM-VSINVSA 665 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + +E + ++ SP+ I+L +E V++ + ++ R + +LR+ G+S+ +DD Sbjct: 666 RQFHQDEFAPKLLVMLKDQGISPAHIELELTEHVLLTDLQQVRQTMTQLREAGVSIAVDD 725 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +P + +K + S + + +I++++I M+ ++ +A+ + Sbjct: 726 FGTGYSSLSYLQELPLNRLKLDASFIRDMGNGDASASIVKAMIDMSHSLNLEFVAEGVEI 785 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + ++L CD Q P+ + +LL Sbjct: 786 QSQFEQLKAYRCDLYQGYLFHRPMPGEELARLL 818 >gi|220934471|ref|YP_002513370.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7] gi|219995781|gb|ACL72383.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7] Length = 926 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 142/578 (24%), Positives = 254/578 (43%), Gaps = 13/578 (2%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + R + ++++ D P + G + G + Sbjct: 353 RQAALALKDSESRYREVIEHVSEVIFRTDHQGRWTLLNPAWEELTGYSIAESLGRPVS-- 410 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 ++ D + + + + +L+ E R+ + W+ + +R ++ G ++ Sbjct: 411 EFVSAEDSPLLEALTNQLLHGNKSQLRDELRLLTRAGEPRWVSVFVRSSQDAEGRVIATF 470 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 G DITE+K++ E I AF D+LT +PNR DRL + +A + ++ +D+ Sbjct: 471 GTLTDITERKRAEEEIRRLAFYDSLTELPNRSLLYDRLRLAMASAARSRH-HGAILFLDL 529 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----- 628 D +K IND LG VGD++L + R+ ++ D LARL G+ F IIL + Sbjct: 530 DNFKDINDTLGHDVGDELLRQVASRMQGTIRETDTLARLGGDEFVIILNDLHPEQAQAAV 589 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + + +A P L E E T SIG + ++ E+LK A+LAMY AK G Sbjct: 590 EAETLGSKLLHLLAEPFRLGEHERHCTPSIGATLFGDGEVNVDELLKQADLAMYRAKDSG 649 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N + F + + ++ D A+ +L+L Y P + I+G EAL++W H Sbjct: 650 RNTLCFFEPEMHQVVKARAALEADFRKALREDQLHLHYQPHVDDQ-GHILGAEALLRWSH 708 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G + EF+ +AE+ +I + ++L+ + + W ++ I + +N+++K Sbjct: 709 PERGMVPPMEFIAVAEQTGLIIKLGRWVLQTACQQLALWHRESQWMRINMAVNVSAKQFR 768 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 + + ++ T + L +ES+++ + E + LR++G+ LDDFGT Sbjct: 769 HPDFVREVAEILQSTGAPAQHLVLELTESLLLEDTETVITRMNALRELGVGFALDDFGTG 828 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL +P +K + S + AI II +AK + +IA+ + Sbjct: 829 YSSLSYLKRLPLSLLKIDQSFVRDILVDANDAAIAEMIITLAKTLGLEVIAEGVETPEQR 888 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 L MGC Q P + + K L R N Sbjct: 889 DFLLEMGCHQFQGYLFGRPGPVDQLEKRLVGRRTGTHN 926 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 80/241 (33%), Gaps = 29/241 (12%) Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359 + VT IA + L+ + +I ++ + G Sbjct: 148 ALLERNVTLGIAMLALSILAAVLFGLVITRRLRRLD----------------AGARAFRA 191 Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFSDGERQSLAVLGSGDI 417 RLD+ I A L L + Q + ER + G+ + Sbjct: 192 GRLDHRIPPLANDEMGDLARTLNALASDLGQSQSTLRQQNLKLNRSVERMEALLRGAEAV 251 Query: 418 VWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 +W+ + + D ILG+++ + G +H +D R Sbjct: 252 LWEAEPATGQWRFVNGDTQAILGISAQQI-GQPGIREARVHADDLPRLRETYRQA---GP 307 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 ++R R+ + + W+ + S+S+G + G+ D++ Q+++ A +D Sbjct: 308 TPSSVDYRYRSNEASWVWLRDIVSSASDSDGHAV-LRGLTLDVSPQRQAA-----LALKD 361 Query: 537 N 537 + Sbjct: 362 S 362 >gi|197116854|ref|YP_002137281.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing protein [Geobacter bemidjiensis Bem] gi|197086214|gb|ACH37485.1| sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 853 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 146/611 (23%), Positives = 268/611 (43%), Gaps = 17/611 (2%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 + + DI + + I+ + Q + + E+ V Sbjct: 234 LLLATVGGRDIPVEVVSNCYQSEQSSVVQFNIRDISIRKNAEQALLTSEEQCRTIVSNIN 293 Query: 416 DIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + V+ V +P I G + W IH DR+ L+ Sbjct: 294 EYVYSVRFEEGDITSVYHSPKCFDITGYTPDEYYRDPLLWFTMIHEEDRNLVVEFLNGIF 353 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD---ILRYIGIANDITEQKKSLEGI 529 R+ D W++ GD I R G DIT+ K++ E I Sbjct: 354 AG-LDHEPIRHRIIHKDGSVRWIVNNCAVQRQRRGDRLSITRLDGFILDITDIKRAEENI 412 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LT +PNR + +R+ ++ + ++ +DID +K+IND +G VGD Sbjct: 413 FFLAHHDPLTKLPNRSTLYERMEQVICAAQKSSR-NVALLFLDIDGFKQINDSMGHDVGD 471 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L S+ +R+ + + D+++RL G+ F ++L + K I +L Sbjct: 472 RLLQSVAKRLSDCTRSCDVVSRLGGDEFVVMLWDCGETETTVVA----EKVINAGFPVLG 527 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707 +TVT SIG + + +LK+A++AMYHAK GGN+ + F + Sbjct: 528 SNVTVTPSIGISVFPDDGRDYLTLLKHADIAMYHAKKSGGNNFQFFTHRLNEIAHERFVL 587 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + +L A++ E L Y P + L G+EALI+W HP G + F+ IAEE ++ Sbjct: 588 EAELRRALDREEFVLYYQPKVDLSTGRFSGMEALIRWQHPAHGLMLPESFIRIAEESGLL 647 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I+ +++ + R I W+ Q + +N+++ + E ++ + +T +P Sbjct: 648 TQISKWIIPTVCRQIQQWQQQGIN-SVSAAVNLSASFFQHPDFEETIEDSLLQTGIAPEC 706 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +E+ +M +P+R + ++ +G+ L++DDFGT S LSYL +P D +K + S Sbjct: 707 LELELTEATIMSDPQRVLGSMAAMKALGLQLSIDDFGTGYSSLSYLKKLPVDKLKIDQSF 766 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + A++R++I + ++++ +IA+ + + L G + Q + + PL Sbjct: 767 IHNIARDADNAAVVRAVISIGRSMQLRVIAEGVENASQLAWLQAEGSEEAQGYYFSRPLP 826 Query: 946 FNSILKLLKER 956 + LLK+R Sbjct: 827 VAKMTALLKQR 837 Score = 39.2 bits (90), Expect = 3.4, Method: Composition-based stats. Identities = 12/133 (9%), Positives = 37/133 (27%), Gaps = 12/133 (9%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPI---RNWLP 454 + R + D + + + P + ILG ++ G + Sbjct: 152 ALQRSEARYRRLFETAKDGIMIVEADSGAIAEVNPFLVDILGCKREALLGKTVWELGFFA 211 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 I D + + + + + + + + ++++ Sbjct: 212 RIVPGASDF------KAMQQKEYFHGDDLLLATVGGRDIPVEVVSNCYQSEQSSVVQF-- 263 Query: 515 IANDITEQKKSLE 527 DI+ +K + + Sbjct: 264 NIRDISIRKNAEQ 276 >gi|297623706|ref|YP_003705140.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM 17093] gi|297164886|gb|ADI14597.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Truepera radiovictrix DSM 17093] Length = 685 Score = 539 bits (1388), Expect = e-150, Method: Composition-based stats. Identities = 171/704 (24%), Positives = 305/704 (43%), Gaps = 37/704 (5%) Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 V + ++ L ++F P A + A ++ + + G+ Sbjct: 2 TRLRQRSVLRLLYASTLGFGALVGLAF--PPFAALLLDTERALEPSFFALCLAAGLLVGW 59 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITK--------RLDNDIIQPALVGGLVLIVILIGFTV 386 L + M D D+I P V +I + G Sbjct: 60 ANCRLFGRVIAREL-GCVVRRMRALHEEVLRSPELTDGDLIAPLPVTSHDVIGEIAGAFN 118 Query: 387 IQHVLATGYFSQGIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + E R L GD+V + +P A +LG A Sbjct: 119 TLAQGVIDRLQRALRDARESEARFRLLTENVGDVVCLHEPNDPLAYVSPSCAALLGYAPE 178 Query: 444 SMHGPIRNWLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++ + L ++H +D R L + R L +R R D + W+ R+R + Sbjct: 179 TLLHT--DPLSWLHPDDAVRLRQGALREVLAGTRDTL--TYRARHKDGRDVWLETRVRAV 234 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G ++ I + DI+E+ + + + D LTG+PNR F DRL ++ Sbjct: 235 RDETGRTVQLISSSRDISERVAAQAALERSTLYDALTGLPNRVLFHDRLAGAIEREKRRP 294 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + V+ +D D++K +ND G VGD +L ++ R+ ++ D +ARL G+ F ++L Sbjct: 295 DNGFAVLSLDFDRFKAVNDAFGHGVGDALLGAIAERLRRCVRPSDTVARLGGDEFTLLLT 354 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 ++ + A + ++ P+ + + ++ASIG + E+L++A++AMY Sbjct: 355 DLADAGEALRAAERVLRAFQTPLTVRGHTLKISASIGVTVSATGYDHPEEVLRDADIAMY 414 Query: 683 HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G F + +R+ ++ DL + L +VY PII + VG+EA Sbjct: 415 QAKTQGRAGYRLFSPTMRDRVLERLALEHDLRATLAYGALEVVYQPIIAVQRGVTVGVEA 474 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILIN 799 L++W HP G +S + F+ +AEE +I ++ F+L R I R + M PPI + +N Sbjct: 475 LVRWPHPLRGPVSPAVFVPLAEEAGLIPELDRFVLRRACAQISQLRARYPMAPPITLSVN 534 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++S S +KL +E +M E +L +LR +G+ L Sbjct: 535 LSSHSFAQPGFA-------------ASDLKLEITERTLMDQTETVAQVLSQLRDLGVGLH 581 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S LSYL ++P T+K + S + TE + ++R+++ MAK +E ++A+ Sbjct: 582 LDDFGTGYSSLSYLQHLPVSTLKIDRSFVERMTESAESAELVRTVVAMAKTLELEVVAEG 641 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 I ++ L +GCDY Q ++ PL + +LL+ + Sbjct: 642 IETPEQLRALQELGCDYAQGHLLSKPLPLAGLEQLLRAPLATTR 685 >gi|114330442|ref|YP_746664.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nitrosomonas eutropha C91] gi|114307456|gb|ABI58699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nitrosomonas eutropha C91] Length = 791 Score = 539 bits (1388), Expect = e-150, Method: Composition-based stats. Identities = 138/578 (23%), Positives = 261/578 (45%), Gaps = 21/578 (3%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448 + ++ + + + V D+ V I G + + G Sbjct: 219 AVQKVRATEALRLS----ATVFASIREGVVITDLEPRIVAVNRAYMRITGYSEEQVLGKN 274 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH--WMIIRIRPMSN-- 504 + +H D+ ++ + + G E R + + + W+ I + + Sbjct: 275 PKIIKSGLH--DKTFYQAMWATLKA--TGHWSGEVWNRRKNGEIYPQWLTINAVCIDSSC 330 Query: 505 -SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + Y+G+ DI++ K+S + A D LTG+PNR +L ++ + Sbjct: 331 CDESNSCNYVGVFTDISQIKQSEAQLAQLAHYDPLTGLPNRLLAQSQLHQAIERAQRHGR 390 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 L V+ ID+D++K +ND LG VGD++L+ L R+ + ++ D LARL G+ F ++L Sbjct: 391 L-VGVLYIDLDRFKNVNDSLGHPVGDELLIKLAERMKKRVREEDTLARLGGDEFLLVLED 449 Query: 624 ENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + A A ++ + P L EI + ASIG + + ++E+++++++AMY Sbjct: 450 VRDLGDPAFVAQSLINLLTSPFVLPSGHEIFINASIGISLFPEDASNATELIQHSDMAMY 509 Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N S ++R++++ L A+ EL L Y P++ +VG+EA Sbjct: 510 QAKKEGRNTYRYHTEALSVAANERLIMENRLRYALSAEELILHYQPLVDARTGYVVGVEA 569 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W P + +F+ IAEE +I + ++L + +W D P+ + +N+ Sbjct: 570 LVRWQPPGKAMVPPGKFIPIAEETGLIVPLGEWVLRTACKQARAWIDAGL-SPLVMAVNL 628 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + L +Q ++ +T ++L +ES+ M + E+S L +L+ +G+ L + Sbjct: 629 SVRQFQSENLVGMVQRILEETQLPADYLELELTESMFMEHVEQSIETLNKLKTLGVHLAI 688 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L YL P D +K + + I +II MA+ ++ ++A+ I Sbjct: 689 DDFGTGYSSLIYLKRFPIDKLKIDQRFVRDLADDHNDREIAATIIAMARGLKLGVLAEGI 748 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E + L + CDY Q P+ + L+E Sbjct: 749 ESEEQLAFLRQQDCDYYQGYLFHRPVPAIELEAWLREH 786 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%) Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G+L +++R D + W++ +++ + ++ +G DI+E+K++ Sbjct: 9 SEGQLVHDYRFYHRDGRIVWLLDQLQLIRDAGDRPYEVVGTCLDISERKRTELIRQAQ 66 >gi|56750209|ref|YP_170910.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300164|ref|YP_400372.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942] gi|56685168|dbj|BAD78390.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169045|gb|ABB57385.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942] Length = 929 Score = 539 bits (1388), Expect = e-150, Method: Composition-based stats. Identities = 155/567 (27%), Positives = 275/567 (48%), Gaps = 17/567 (2%) Query: 398 QGIFSDGERQSLA---VLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ L + S + V D + P I G + M G Sbjct: 360 AERKASEQQLRLLKESLEASFNGVVIVDAIEPDMPVIYVNPAFERITGYSEAEMLGRNCR 419 Query: 452 WLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 L N+RD+ + + + + R D Q W + I P+ N+ G++ Sbjct: 420 ILQG---NERDSLQIEEIHRGLSQ-AENVHVVIRNFRKDGQPFWNDLYISPIFNAQGNVT 475 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 +IG+ NDITEQK+ E + +A D LTG+PNR DRL ++ + ++ Sbjct: 476 HFIGVQNDITEQKRYEEELSFSASHDVLTGLPNRAVLEDRLRQGCKMALRQKH-SLAILF 534 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND +G GD +LV + +R+ E ++ D +AR+ G+ F I+L+ + Sbjct: 535 IDLDGFKLINDSIGHRSGDLLLVEVAQRMCEQVRAGDTVARIGGDEFIILLVDLKLENDV 594 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + S+A P ++ + VTAS+G +++++ A+LAMY AK G N Sbjct: 595 ISIADRLLASVARPYHIQGIYLHVTASMGITLSDGDIEQPTQLIQQADLAMYKAKQEGRN 654 Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + + +RV ++ +L A+E L + P I +++GLEAL++W HP+ Sbjct: 655 NYQWYTNDLNLRLRERVHLRNELQKAIETEAFELYFQPKIEGCSGQVIGLEALLRWQHPQ 714 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G IS + F+ IAE+ I ++ ++LE R + Q P + +NI++ Sbjct: 715 MGFISPATFVPIAEDTGQIIPLSQWVLETACRQLRDLLQQGIAAP-SVAVNISTVQFRRI 773 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + +Q+ + K +++ +E+V+ N E++ L RL+++G+++++DDFGT S Sbjct: 774 NFVKSVQSALQKYQLKSEHLEIEITENVLFDNTEKAIEKLQRLKELGVNISIDDFGTGFS 833 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL +P DTVK + S + AI + II MA ++ ++A+ + E K Sbjct: 834 SLSYLKELPIDTVKIDRSFVQEINTDSRDAAITQGIISMAHHLRLNVVAEGVETEQQFKF 893 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953 L + CD Q + A P+ F ++ + L Sbjct: 894 LQQSNCDQYQGYYFAKPMPFEALKQYL 920 Score = 45.7 bits (107), Expect = 0.037, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 15/166 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442 I++ + + + R L + + +W + + + G + Sbjct: 120 LRSIRYAIDRNLATTRLAESESRYRLLFEANPEPMWVFAKQGLQFLAVNQAASQFFGYSQ 179 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 L ++ F +S + + R + + I Sbjct: 180 QEFL--AMTVLDIQSEEEKTRFLQFFESLICNQIVDPAVGVWAYRHKQGHLVFADVLIHD 237 Query: 502 MSNSNGDILRYIGIANDITEQKKSLE--GILCNAF-------QDNL 538 N + I DITE++ + E AF +D L Sbjct: 238 FEFDNQPCCLILAI--DITEKQAARELAHQREQAFRKLLNDNRDPL 281 >gi|315182729|gb|ADT89642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Vibrio furnissii NCTC 11218] Length = 993 Score = 539 bits (1388), Expect = e-150, Method: Composition-based stats. Identities = 137/579 (23%), Positives = 275/579 (47%), Gaps = 11/579 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L ++ + + + + ++ + + S D +W WD++ +R++ + Sbjct: 409 LDILSLFVERDALIETSVQRHKKSQQLLQQLKVVLNSSNDGIWQWDLLANRLSWNGRLTK 468 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 +L LA S + L +H +DR F +L +++ + R+R D + W+ Sbjct: 469 MLKLADTSDAINPQVLLNRVHPDDRPAFEEMLQTYLDV-SEPFKCILRLRRDDGHYIWVQ 527 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + + N+ G +R +G DITEQ++S + I A+ D LTG+ NR+ ++ + + Sbjct: 528 LSGAVIHNTQGRPIRLVGSMTDITEQQESADKIHQMAYYDGLTGVANRRKLMEVIEHHI- 586 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 N VM++D++++K IND G VGD +L + + + L+ DI+ R G+ Sbjct: 587 --QHHPNSTKAVMMMDLNRFKIINDTFGHQVGDALLCHVAEALQQTLRAEDIIGRFGGDE 644 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +N+ + A + +++ P+ E+ ASIG A + + E++KN Sbjct: 645 FVFFCDVQNDYQ-AHELANRLLRAVKRPMQYDNMELVGEASIGVAFYPQHGVDGDELIKN 703 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY AK GG V F + + I+ L LA++ E+ + Y P+ + Sbjct: 704 ADVAMYRAKQLGGGEVVLFNSNMHEPFKTHLRIEHLLGLAIDQGEIQVHYQPVFSRQHDH 763 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I+ +E L +W G ++ SEF+++AE +I + ++++R+ +D+ + N+ Sbjct: 764 IIAVEVLARWHSATLGQVNPSEFIVVAENSFLIMKLGDYIIDRVCQDVKTSPWLQNLQ-- 821 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N++++ L + + + ++ S L +E+ M + E+ L L+ Sbjct: 822 HISVNVSARQLGHSRFADNLAQKVNDYGLPASLFCLEMTETAAMADKEQCLRTLIALKNA 881 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G +L+LDDFGT S LS L +P VK + S + ++ ++ +I M +++ Sbjct: 882 GFTLSLDDFGTGFSSLSLLKRLPISEVKIDRSFIADIEAHPANLSFVKGLISMVQSLGHR 941 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++A+ + E + L +G D +Q ++A P + Sbjct: 942 VVAEGVETESQTQLLRALGVDLMQGFYLARPASLREFEQ 980 >gi|220935752|ref|YP_002514651.1| hypothetical protein Tgr7_2589 [Thioalkalivibrio sp. HL-EbGR7] gi|219997062|gb|ACL73664.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7] Length = 759 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 143/562 (25%), Positives = 258/562 (45%), Gaps = 13/562 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + + + D + I G + G + G L H + F + Sbjct: 195 VFESTAEGIAITDSRMRFLQVNEAYCRITGYSDGELLGRTPRMLKSGHHD--AAFYADIS 252 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + R G + E R D + ++ I + ++ G + YI I DI+ K++ + Sbjct: 253 KTLEVR-GHWRGEILDRTRDGRVIPLLQTISVVRDTQGAVSHYITIVTDISSIKETQSRL 311 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LT +PNR F RL +D + + ++ ID+D++K IND LG +GD Sbjct: 312 DFLAHHDPLTELPNRLLFTARLEHAIDWAVRNQ-AHFGLLFIDLDRFKTINDSLGHQLGD 370 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +LV + RR+ L++ D +ARL G+ F +++ +N+ + A + ++ P L E Sbjct: 371 RLLVQVARRLRGLVRKSDTIARLGGDEFVVLVEGIHNAGEAELLAEKLVHAMRQPFFLEE 430 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMI 707 E+ + SIG + +LKNA+ AMY K G + F +R+ + Sbjct: 431 TELHIGCSIGITLYPEDGEDPVTLLKNADAAMYRVKDFGRDGFCKFSQDLAEAVDERLAL 490 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L A+ ++L + Y P+I L +V +EAL +W H + G I+ F+ +AEE +I Sbjct: 491 ETALRQALRENQLQVHYQPVIDLAQGRMVAVEALARWRHAERGEIAPCSFIRLAEETKLI 550 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 + +M WR++ ++ IN + +L D +G+ + + Sbjct: 551 LPLGGWMARTAIGQFRLWRERGMELD-YVSINTSGIELFDPGFVDGLFEALDEHGLEGRH 609 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 +++ +E+V+M + E R +L RLR+ G+ + +DDFGT S L+YL +P D +K + S Sbjct: 610 LQIELTENVLMQDYEACRRVLLRLRQQGVRIAIDDFGTGYSSLAYLKQLPIDMLKIDRSF 669 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI+ +II MA + +A+ + E L +GC+ +Q A PL Sbjct: 670 IKDVPGDPGDCAIVETIIAMAHRLGLATVAEGVETEEQEDYLLAIGCERLQGYRYARPLD 729 Query: 946 FNSILKL----LKERFPLVKNT 963 S+ +L +++ P ++ Sbjct: 730 PVSLERLHADSVRQAAPDSASS 751 >gi|77919642|ref|YP_357457.1| motility repressor MorA [Pelobacter carbinolicus DSM 2380] gi|77545725|gb|ABA89287.1| motility repressor MorA [Pelobacter carbinolicus DSM 2380] Length = 643 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 158/596 (26%), Positives = 272/596 (45%), Gaps = 24/596 (4%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI----VR 425 AL G ++ + ++ + +Q + + D ++DW++ Sbjct: 39 ALTAGFTFLIAAFCVAMGRYTIT----AQKLHESEKLFR----TFADFIYDWELWISAEG 90 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + T+P I G A+ + IH D + D + EFR+ Sbjct: 91 SLIHTSPACERISGYATTAFKNDSDLLRRIIHPEDLQRY----DRCENEATPGFR-EFRM 145 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 D Q W+ + R + N G L DIT +K I A+ D LTG+PNR Sbjct: 146 IRRDGQLRWVELLSRQLRNEEGKDLGRRLTIRDITGKKAREHEIRQIAYSDALTGLPNRL 205 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 + + L ++ + V+++D+D +K+IND G A GD++L+ LT R+ E L Sbjct: 206 ALKMDMDKALAKASRN-TAMVAVLMLDLDDFKQINDTTGHAKGDEMLLLLTSRLREQLGE 264 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWT 664 D LARL G+ F ++L +++ A + S+ P +L+ ++ +ASIG A + Sbjct: 265 KDSLARLGGDEFVVVLNEIDSATCAAKKTEKILASLRDNPFDLVVAKVFASASIGIALFP 324 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYL 722 + + +LK+A++AMY AK+ G N F +R ++ L AV E +L Sbjct: 325 QNGRDAETLLKHADMAMYEAKNVGRNTYRFFSDELHRRTIERHKLEVGLRRAVRKKEFFL 384 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 VY P + L IV LEAL++W HP+ G + S F+ +AEE +I + ++L Sbjct: 385 VYQPQVDLGTGRIVALEALVRWQHPEAGVLLPSTFIPVAEETGLIHIMGEWILRTACHQA 444 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + W+ PP+ I +N +++ +L E ++ ++ ++ P ++L +ESV M N E Sbjct: 445 MQWQRMGL-PPMRIAVNFSARQFRQPDLVERIEQILLESGLPPHHLELEITESVFMENLE 503 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 + L L+ I + +DDFGT S L+YL P D +K + E I+ Sbjct: 504 SAIETLVDLKTRAIQIAIDDFGTGYSSLNYLKNFPLDRLKIAQDFVRDIPDDEDDATIIE 563 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +I+ MA + ++A+ + + L R GC +Q + A P+ I L +R Sbjct: 564 TIMAMANRLGIKVLAEGVETMEQVTFLRRKGCHEMQGFYFARPMQAEEIAGFLNQR 619 >gi|260770222|ref|ZP_05879155.1| hypothetical protein VFA_003289 [Vibrio furnissii CIP 102972] gi|260615560|gb|EEX40746.1| hypothetical protein VFA_003289 [Vibrio furnissii CIP 102972] Length = 993 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 137/579 (23%), Positives = 275/579 (47%), Gaps = 11/579 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L ++ + + + + ++ + + S D +W WD++ +R++ + Sbjct: 409 LDILSLFVERDALIETSVQRHKKSQQLLQQLKVVLNSSNDGIWQWDLLANRLSWNGRLTK 468 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 +L LA S + L +H +DR F +L +++ + R+R D + W+ Sbjct: 469 MLKLADTSDAINPQVLLNRVHPDDRPAFEEMLQTYLDV-SEPFKCILRLRRDDGHYIWVQ 527 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + + N+ G +R +G DITEQ++S + I A+ D LTG+ NR+ ++ + + Sbjct: 528 LSGAVIHNTQGRPIRLVGSMTDITEQQESADKIHQMAYYDGLTGVANRRKLMEVIEHHI- 586 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 N VM++D++++K IND G VGD +L + + + L+ DI+ R G+ Sbjct: 587 --QHHPNSTKAVMMMDLNRFKIINDTFGHQVGDALLCHVAEALQQTLRAEDIIGRFGGDE 644 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +N+ + A + +++ P+ E+ ASIG A + + E++KN Sbjct: 645 FVFFCDVQNDYQ-AHELANRLLRAVKRPMQYDNMELVGEASIGVAFYPQHGVDGDELIKN 703 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY AK GG V F + + I+ L LA++ E+ + Y P+ + Sbjct: 704 ADVAMYRAKQLGGGEVVLFNSNMHEPFKTHLRIEHLLGLAIDQGEIQVHYQPVFSRQHDH 763 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I+ +E L +W G ++ SEF+++AE +I + ++++R+ +D+ + N+ Sbjct: 764 IIAVEVLARWHSATLGQVNPSEFIVVAENSFLIMKLGDYIIDRVCQDVKTSPWLQNLQ-- 821 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N++++ L + + + ++ S L +E+ M + E+ L L+ Sbjct: 822 HISVNVSARQLGHSRFADNLAQKVNDYGLPASLFCLEMTETAAMADKEQCLRTLIALKNA 881 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G +L+LDDFGT S LS L +P VK + S + ++ ++ +I M +++ Sbjct: 882 GFTLSLDDFGTGFSSLSLLKRLPISEVKIDRSFIADIEAHPANLSFVKGLISMVQSLGHR 941 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++A+ + E + L +G D +Q ++A P + Sbjct: 942 VVAEGVETESQTQLLRALGVDLMQGFYLARPASLREFEQ 980 >gi|302878359|ref|YP_003846923.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Gallionella capsiferriformans ES-2] gi|302581148|gb|ADL55159.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Gallionella capsiferriformans ES-2] Length = 1301 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 151/608 (24%), Positives = 274/608 (45%), Gaps = 14/608 (2%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 ++ ++ + L H+ + + + S AV S Sbjct: 698 ILSTKGQVLGTFALYYSKSRSPMADELAALERGAHLASLAIERAQTGAWLNKLSQAVEQS 757 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFV 472 + + D+ + G + G +H + + + Sbjct: 758 PNSIVITDLNANIEYANDAFVKTTGYTLPEVMGKNP---RILHSGKTTVETYAAMWTQLN 814 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + E R D + + RI P+ +++G + Y+ I DITEQK+ I Sbjct: 815 SGQ--MWRGELINRRKDGTEYVELARISPLRHTDGRVTNYLSIKEDITEQKQVEARIRQL 872 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D LTG+PN+ DR + ++ + V+ +DID +K IND LG +GD++L Sbjct: 873 AHFDLLTGLPNQTLLKDRAGFAMQMAQRSAH-HLAVLFLDIDHFKNINDTLGHRIGDELL 931 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 V L +R+ LL+ D L+R G+ F ++L ++ A A + +++A + + E+ Sbjct: 932 VHLAKRMKLLLRDEDTLSRFGGDEFILVLPD-TDADGAAHVAEKILETVAKTCYIEQHEL 990 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KED 710 VT SIG A + S + ++ ++A++AMY AK G N+ F + + Sbjct: 991 VVTPSIGIAMYPSDGMDFDKLYQSADVAMYRAKQDGRNNFRFFTSEMQARSARRLLLENA 1050 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A+ ++ L Y P I + D +IVG EAL++W HP+ G+IS +EF+ +AEE +I +I Sbjct: 1051 LRQALSRNQFELHYQPQISMQDGKIVGAEALLRWYHPELGSISPAEFIPVAEESGLILSI 1110 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L + + W+D PP+ + IN+++ L E + ++ + +P I+L Sbjct: 1111 GEWVLRTAVQQVKRWQDA-GHPPVTVAINLSAVQFRQARLSELVMQILHEANLAPHWIEL 1169 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ESV M NP + ++ L GI +++DDFGT S LSYL + +K + S + Sbjct: 1170 ELTESVAMDNPLVAIGVMNDLHGCGIRMSIDDFGTGYSSLSYLRKFKVNKLKIDQSFVRD 1229 Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + AI+ +II +A ++ IA+ + + L GC+ +Q + + PL Sbjct: 1230 LADDIESRAIVTAIITLASSMGFQTIAEGVETAGQLAFLRLQGCNEVQGYYFSRPLTVAL 1289 Query: 949 ILKLLKER 956 + Sbjct: 1290 FEAFVLGH 1297 Score = 74.2 bits (181), Expect = 1e-10, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 11/201 (5%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVG-GLVLIVILIGFTVIQH--VLATGYFSQGIFS 402 + + + + D L L ++ I TV+ + + Sbjct: 215 VFEMAGLMQASRYRHLVVVDDAGLVLGMVTLHKLMARIAATVMNEETLRRQESLEHSMHH 274 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + L V D++W D+ ++ P G + G ++ D Sbjct: 275 AESQLRLIVKTIPDLIWLKDVEGVYLSCNPMFERFFGAIEADIVGKTDY--DFVSREQAD 332 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 FR + + + + E+ A D + PM N+ G ++ +GIA+DITE+ Sbjct: 333 FFRAHDRAAMLADKPSINEEWVTFADDGHRACLETTKSPMFNAVGQLIGVLGIAHDITER 392 Query: 523 KKSLEGILCNAFQDNLTGIPN 543 + + I LT + N Sbjct: 393 LAAAKKIER------LTQLYN 407 >gi|94266037|ref|ZP_01289757.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1] gi|93453397|gb|EAT03822.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1] Length = 751 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 259/563 (46%), Gaps = 13/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 Q + + ++ + D + P + I G A + G R Sbjct: 194 RQQLEEWLRQSAMVYENMWEGAVITDPAGTILDVNPAFSRITGYAKDEVIGKNPRILKSD 253 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H ++ + + +G+ + E R + + + + I +S++ G Y+G+ Sbjct: 254 RHEQ--AFYQHMWRELIE--KGQWRGEIWNRRKNGEVYPEWLSISGVSDARGQTSYYVGV 309 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D+++ K+S + A+ D LT +PNR RL L+ + + V ID+D+ Sbjct: 310 FTDLSQLKQSEAKLESLAYYDPLTALPNRLLLHSRLEHALEWAERHQ-TKVGVYFIDLDQ 368 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 ++ +N+ L GD +LV +++R L+ D LAR G+ F +I + + + + A Sbjct: 369 FRVVNESLSYQAGDQLLVMVSKRFLSCLRVDDTLARPGGDEFVLIQEALADPQEATETAR 428 Query: 636 AMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + S+ P L +EI + ASIG + T ++LKNAE AMYHAK G N Sbjct: 429 ELLASLDQPFQLDGGQEIYLGASIGITVFPGDGTTPPDLLKNAEAAMYHAKENGRNRFSF 488 Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGN 751 + ++++ R+ ++ L AVEN EL L Y P +L D ++G EALI+W + + Sbjct: 489 YAEQMNADALARLQMEMALRQAVENRELLLYYQPQWQLADSPSVIGAEALIRWRNKEGEL 548 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I+ +F+ +AE+ +I AI ++++ R + WRDQ + + +N++++ L Sbjct: 549 IAPDQFIPLAEKSGLIGAIGDWVIDEACRQLRIWRDQ-GKKQLRVAVNVSARQFRAGNLA 607 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + + K +L +ES++M PE + LL R +G+ + LDDFGT S L+ Sbjct: 608 EVVAQALRKHEIPAHCFELELTESILMEKPEEAAELLNRCAALGVGIALDDFGTGYSSLA 667 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P +K + S + + A I SII +A + ++A+ + E L Sbjct: 668 YLSRFPITVLKIDRSFVRDLNHRSEAALIADSIIALAHRMGLQVVAEGVETEEQRAYLQS 727 Query: 930 MGCDYIQDSHVASPLGFNSILKL 952 GCD Q + PL + Sbjct: 728 RGCDLAQGFLFSPPLPAEQFAEF 750 >gi|307822295|ref|ZP_07652527.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307736861|gb|EFO07706.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 874 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 141/563 (25%), Positives = 262/563 (46%), Gaps = 17/563 (3%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLP 454 + + + L S + ++ D + +I G + G R Sbjct: 310 ELKNRETQLQLSAKVFENSSEAIFITDPQGTIMEVNAAFCSITGYERSEVLGRNPRILKS 369 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H D+ ++ + S + G + E R + +F M++ I +++ G + Y+ Sbjct: 370 KLH--DKPFYKRLWRSLLDE--GGWKGEIWDRRKNGEFCPMLLSINAVADKLGQLTHYVA 425 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I+ DI++QK++ + A+ D LT +PNR F +R + L+ + N R + +D+D Sbjct: 426 ISTDISQQKQTERELKQLAYYDVLTSLPNRSLFKNRFEHEICLAERN-NTRLALFFLDLD 484 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K +ND LG GD +L + RI L+ D +AR+ G+ F IIL + A Sbjct: 485 HFKNVNDTLGHWAGDCLLQITSTRIQSCLRKTDTVARMGGDEFTIILPGLTGITDATELA 544 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P+ + + + V SIG A + + K+A+ AMY AK +G + Sbjct: 545 RKLIDAMTKPVQIKDHTVFVGVSIGIAIFPDDGNDFYTLTKHADTAMYAAKAKGRGLFQY 604 Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + ++ R++++ L LA+E E L Y P I G EALI+W P +G I Sbjct: 605 YEEGMNEAAHQRLLLENALRLAIEREEFQLYYQPKADSNLSRITGAEALIRWRRPGFGII 664 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ IAEE +I + ++L+ W +Q P + IN++ LL ++ Sbjct: 665 PPDRFIAIAEETALIIPLGKWILKTACLQAKVWVNQL--PGFRLAINLSPLQLLADDFIV 722 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++++T P I+L +E ++M + ++ L ++R+ GI + +DDFGT S LSY Sbjct: 723 VLDRILAETDTKPEWIELEVTEGLIMLDIVKATERLHQIRERGIHVAMDDFGTGYSSLSY 782 Query: 873 LGYIPFDTVKFNGSLM----TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 L +P T+K + S + A +++I+ + + T++A+ + E + L Sbjct: 783 LQKLPIHTLKIDRSFIMAYTNDPASSEAAFIKTIVSFGQVLNMTVVAEGVETESQLALLQ 842 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 GCD IQ +++ PL + + Sbjct: 843 SYGCDEIQGYYLSPPLPADEFQR 865 Score = 45.7 bits (107), Expect = 0.039, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 47/158 (29%), Gaps = 21/158 (13%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + Q + +R + D++ D + + LGL + G Sbjct: 172 LKEKVHQQQALSRFVDR---VMDTIDDLLVVIDTEGRILRLNTAVERELGLTEAELLGTG 228 Query: 450 RNWLPYIHINDRDNFRTIL--------DSFVGYRR--GRLQYEFRVRAADN----QFHWM 495 + + ++ + L + R G E + + +W+ Sbjct: 229 ID--ELLTPLEQQHLAGQLPGLPWPIRSVLLETIRLNGYYAGEHELLGKNRDNAKSIYWL 286 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + G + + A +ITE K + +A Sbjct: 287 KSS--LLHSEQGKLEGAVVTALNITELKNRETQLQLSA 322 >gi|70732952|ref|YP_262723.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens Pf-5] gi|68347251|gb|AAY94857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5] Length = 1241 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 154/574 (26%), Positives = 273/574 (47%), Gaps = 12/574 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445 + + + + ++ + + + V D + + I G + ++ Sbjct: 658 MLTIARDITDRRLMQEKLQQAATVFESTAEGVMITDTQQRISAVNRAFSEITGYSEREAL 717 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 R +H D + + G Q E R + + + + I + N Sbjct: 718 GHTPRLLASGLH--DSAFYAAMWHQL--TLEGHWQGEISNRRKNGELYPNWLTINAVRNR 773 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 I ++ + DI+ K + + A D LTG+PNR F RL + L+ S D+ + Sbjct: 774 ENQITHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLLSALN-SQQDNGSQ 832 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K IND LG VGD +L + R+ E L+ D +ARL G+ F I+L + Sbjct: 833 GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAVRLKEQLRDIDTVARLGGDEFIILLPGLH 892 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + A + P E E ++ASIG + + + ++KNA+ AMY +K Sbjct: 893 QASDADHIATKLLNCFTAPFQAGEHEFFISASIGTSLYPKDGCDVATLIKNADAAMYRSK 952 Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G N VE + + S+RV ++ +L A+E +EL L + P I L + E+VG EALI+ Sbjct: 953 AKGRNRVERYTRDLTAQASERVALEHELRRAIERNELSLYFQPKISLSNHELVGAEALIR 1012 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP +G++ F+ +AEE MI I ++LE+ + +W + + +N+A Sbjct: 1013 WHHPTFGDVPPEHFIPLAEENGMILLIGDWVLEQACLQLNNWNRRFEDFG-PLSVNLAGA 1071 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L L ++ L+ P ++L +E+ +M E + +L +L+++G+ L +DDF Sbjct: 1072 QLRQPNLLGRIEQLLRDYDLQPGMLQLEITENFIMSQAEEALEVLHQLKRLGVQLAIDDF 1131 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D +K + S + G +AI+R+II + ++++ T+IA+ + + Sbjct: 1132 GTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDVAIVRAIIALGRSMQFTVIAEGVENQ 1191 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954 LT GC+ IQ V+ PL L+ Sbjct: 1192 EQQTFLTLEGCEQIQGYIVSLPLEAEEFCTTFLR 1225 Score = 76.1 bits (186), Expect = 3e-11, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 48/149 (32%), Gaps = 5/149 (3%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATIL 438 I I + + Q + S V I W+ I +P +L Sbjct: 280 IRINRRLSSEISRRVALEQELRSSEYHYRSLVESLSAIAWEARISDFTYSYVSPHAEALL 339 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G W IH D + D V R ++RV AAD + W+ Sbjct: 340 GYPLAHWL-IPGFWRNIIHPADLTRAQAFCDHEVQAGRDH-SLDYRVIAADGRCLWVRDI 397 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + +G G+ DI+E K + E Sbjct: 398 VSLI--EHGHEPVMRGLMIDISETKHTEE 424 Score = 52.6 bits (125), Expect = 4e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 8/153 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGL-A 441 V++ + Q + + E+ + A S D + + + I G + Sbjct: 534 VVVVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLTRQRDGLLIEVNEGFSRITGFNS 593 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + S+ + ++++N+R +L + +R D Q + RP Sbjct: 594 AMSLDRSTLDLGIWVNLNERKQMLDLLQR----DGFVRDFNCHIRRNDGQIRLCELSSRP 649 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + G + IA DIT+++ E + A Sbjct: 650 L--PIGGDDCMLTIARDITDRRLMQEKLQQAAT 680 >gi|307823159|ref|ZP_07653389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307735934|gb|EFO06781.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 709 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 147/571 (25%), Positives = 272/571 (47%), Gaps = 12/571 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + E+ + + + +LGL + G + Sbjct: 140 ELIQIEDALRQSEEKHRFLLEQINAGIMIHAPDTRVASCNRQTCNLLGLNEQQILGKVAA 199 Query: 452 WLP---YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSN 506 F + + + + +D + W++ P N Sbjct: 200 DFECAFICEDETPMRFDQFPANQVIRQNKAVKNLVIGIVRSDLSDNRWVMANAFPEFNDE 259 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G+IL DITE KS E I A D+LT +PNR +R+ + S+ +N Sbjct: 260 GEILNITVTLIDITEHVKSQEEIHRLAHYDSLTQLPNRFLIHERIDQAI-HSSRRENQSF 318 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ +D+D +K +ND LG GD +L ++ R+ + L+ D+ RL G+ F ++L + Sbjct: 319 ALLFLDLDNFKIVNDSLGHHRGDLLLQQVSDRLKDCLRKGDMAGRLGGDEFVVLLPN-TG 377 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + A + + ++I P ++ E + + SIG + + + + S + ++A++AMYHAK Sbjct: 378 ADGAAHVSSKIIEAINAPFDVEEYLLNIGTSIGISIYPNDGLESDTLTRHADIAMYHAKA 437 Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 GG F R++++ D+ LA++ + L Y P I L ++V +EALI+W Sbjct: 438 SGGGRNCFFDSEMNARIEYRLVMERDMYLALDQHQFQLHYQPQIDLSSGKMVAVEALIRW 497 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G IS +EF+ IAE+ +I I L++L+R RDI +W + P I + IN++ + Sbjct: 498 PHPQRGMISPAEFIPIAEDSGLIMQIGLWVLQRACRDIKTWLAE-GHPRIKVAINLSLRQ 556 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L + +L + +I +T P+ ++L +ESV+M N + + + + R GI+ ++DDFG Sbjct: 557 LQNPQLFAQIIDIIDETGIPPACLELELTESVMMENHDVTLDFMAQCRNFGINFSIDDFG 616 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL +P D +K + + + + A I+ +II MAK++ I+A+ + E Sbjct: 617 TGYSSLSYLTKLPLDKIKIDRAFVKDIAKDSDANTIVSAIISMAKSLRLKIVAEGVETEE 676 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L GCD +Q + + + + + +++ Sbjct: 677 QLNYLKECGCDTVQGFYFSPAISYAMLTQMI 707 Score = 85.0 bits (209), Expect = 6e-14, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 11/138 (7%) Query: 404 GERQSLAVLGSGDIVWDWDIVR--DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 +R + + + ++ + +I + G + W+ IH DR Sbjct: 23 LDRLAHLLSQAPVTIYTCKPNGVFGITFLSDNIKDLFGYKAEEFLHNPDFWINNIHPEDR 82 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 D + +++ + L ++R + ++ + W+ R R +++ +G + IG D++E Sbjct: 83 DLVISGMNAIHAGK--SLLRKYRFKMKNSHWKWIRDRARLVTDQSGKPIEIIGAWTDMSE 140 Query: 522 -------QKKSLEGILCN 532 ++S E Sbjct: 141 LIQIEDALRQSEEKHRFL 158 >gi|332535743|ref|ZP_08411489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas haloplanktis ANT/505] gi|332034851|gb|EGI71383.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas haloplanktis ANT/505] Length = 967 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 152/654 (23%), Positives = 285/654 (43%), Gaps = 11/654 (1%) Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372 + + + Y + + + VL ++ + G T+ + + + Sbjct: 317 LKFFGLFILYAILVALLLHQALYQLVLRRLHTLVYAVTSFGKGQLTTEFPPENKDEIGTL 376 Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 G + + +I + + R S AV SG V D P Sbjct: 377 NGSFRDMTVEIRKLIDGLNQRITEKEIAEKAANRLSKAVAFSGTGVVITDENFVIEYVNP 436 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 + + G + L I I R + + + + + Sbjct: 437 KMLEMTGYPESHFNRAP--LLNIIASEMSILVEDI--DIDLRSRNYWRGDTLIAGLNKEP 492 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 W+ + + P+ G+I Y+ A DI+ K+S + A+ D LTG+ NR F +L Sbjct: 493 IWVSLSVSPIREEGGEITSYVASAQDISFVKESQRKMEQLAYFDTLTGLANRTFFRMQLR 552 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 + L+ + + D+D++K+IND LG GD +L+ + R+ + L+ D +ARL Sbjct: 553 KSMALAER-GHYAFALFYFDLDEFKRINDTLGHDAGDQLLIEVANRLKKRLRAEDTIARL 611 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F ++L + AD A ++K++ +PI L E+ V+ASIG + + Sbjct: 612 GGDEFAVLLSGIESQSHAADVANTIQKTLNVPIKLGSNEVIVSASIGITMAPYDSLEEDQ 671 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRL 730 +LK+A+LAMY AK +G N + + + + +L + ++ + + Y P + Sbjct: 672 LLKHADLAMYEAKAKGRNTFHFYSQELNAAANERLFIENELRIGLKEKQFVVYYQPQVDS 731 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 ++VG EAL++W HP G I +F+ IAE +I + ++L+ + Q Sbjct: 732 RTHQVVGYEALLRWFHPTEGAIPPDKFIPIAEATGLIVELGEWVLQESCDFAVRLAKQGL 791 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 I IN++++ D+ L + +I K+ S R+ L +ES++MGN E + L Sbjct: 792 ENN--ISINLSARQFKDSSLVTTLSKMIIKSGVSAKRLHLELTESMLMGNVEAAITQLHE 849 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 L+ +GIS+++DDFGT S LSYL P D +K + S + + I +II MA+ Sbjct: 850 LKALGISISIDDFGTGYSSLSYLKRFPVDILKIDRSFVKDIPEDTNDMEITAAIIAMAQK 909 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 ++ ++A+ + ++ L C +Q + + P+ + + L + L + Sbjct: 910 LKLDVVAEGVETIEQMQFLQNNNCFIVQGYYFSKPIAEHELPNLYERLNELANS 963 >gi|104779485|ref|YP_605983.1| sensory box protein [Pseudomonas entomophila L48] gi|95108472|emb|CAK13166.1| putative sensory box protein [Pseudomonas entomophila L48] Length = 643 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 146/625 (23%), Positives = 280/625 (44%), Gaps = 19/625 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDII----QPALVGGLVLIVILIGFTVIQHVLAT 393 + +L +W + + ++ + + V VL+ L+ F +L Sbjct: 22 RMAGLYVVLSILWLALSELVLHGMTEDPLALTVGRQINVVVWVLLSALLIFVSRARLLNF 81 Query: 394 GYFSQGIFS-DGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448 + S D ER +A + + V D V I G + G Sbjct: 82 IGIGARLRSEDRERLRMAAAVFDSTLEGVLVTDRNGLIVHVNRAFMRITGYQQDEVVGQR 141 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + H D ++ I + +G E R + + I + + +G+ Sbjct: 142 PSKFKSGRH--DAPFYQQIYAALAD--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDSGE 197 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + Y+ + +DI+ K + E + A D LTG+PNR F DR+ L + + + Sbjct: 198 LSHYVAVFSDISAIKHTEEELAYLAHHDPLTGLPNRLLFNDRVEQALAAAQANKRG-CAL 256 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +++D+D ++ IND LG +GD +L + R+ E+L LARL G+ FG++ + Sbjct: 257 LLLDLDHFQSINDGLGHTIGDQLLKLVGERLREVLGNGVTLARLGGDEFGVLAENCQQVG 316 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + A + + + P + ++ASIG + + S +++ ++L+NA+ A++ AK G Sbjct: 317 QAGKLAQTIIEQLKEPFGFEGNRLFISASIGISLFPSDALSAEQLLRNADSALFKAKGNG 376 Query: 689 GNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 + + ++ +L A+E EL + + P+ L ++G+E L++W H Sbjct: 377 RACYALYTEELTAHAQQRVETAGELRRALEQQELRVFFQPVHDLFTSRMIGVETLVRWQH 436 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P G + EF+ IAE +I I+ ++L + R ++ W+ + + F+ +NI+S+ Sbjct: 437 PTRGLVPPGEFIPIAERTGLIAEIDAWVLGQACRQMVQWQAEGRVLE-FVAVNISSRLFN 495 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 EL + ++ T +P+ ++L +ES VM +PE + + RLR++G++L +DDFGT Sbjct: 496 QRELYRQVADVLHDTGLNPALLELEVTESAVMEDPEVALEQMHRLRELGLNLAIDDFGTG 555 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L L +P +K + + G + IAI+R II +A+++ + A+ I Sbjct: 556 YSSLLRLKRLPVQKLKIDQGFVAGLPHDDDDIAIVRVIIALARSMGMQVHAEGIEQAEQA 615 Query: 925 KELTRMGCDYIQDSHVASPLGFNSI 949 + L C Q P+ + Sbjct: 616 RFLLEQQCQMGQGYWFGRPVPAGEL 640 >gi|107099266|ref|ZP_01363184.1| hypothetical protein PaerPA_01000278 [Pseudomonas aeruginosa PACS2] Length = 760 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 142/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%) Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + D RQ+ AV + + V D V P I G S + G L Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D+ ++ + + E R + + + IR + N G + Y+G+ Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRVVRNDQGQLTHYVGVF 314 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +D++ K+S + A D+LTG+PNR +R+ L+ D + +++ID+D + Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD +L +++R+ L +L+RL G+ F I++ ++ + +A + Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P ++ + I ++AS+G + + ++++A+ A++ AK G N + Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ V ++ L A+++ EL + Y P+ L IVG+E+L++W HP+ G + Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE +I A++ ++L+R R + W+ + F+ +N++S+ L E + Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ P ++L +ES VM + E+S LL RLR +G++L +DDFGT S L L Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P +K + + G AI R+I+ +A+++ ++A+ I + L GC Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731 Query: 933 DYIQDSHVASPLGFNSIL 950 D+ Q P ++ Sbjct: 732 DFGQGYWYGRPQPAEALR 749 Score = 140 bits (354), Expect = 9e-31, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + AW + + + +L + L +L+ +++ Sbjct: 17 IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + +R + A+ D +WDWD+V DR+ +P A ++GLA + PI W +H Sbjct: 76 LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + L + +R+R D + W+ R R + ++ G L Y G+A DI Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195 Query: 520 TEQKKSLEGILCNA 533 T Q+ + + A Sbjct: 196 TLQRLKEDHLRQAA 209 >gi|251788399|ref|YP_003003120.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Dickeya zeae Ech1591] gi|247537020|gb|ACT05641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dickeya zeae Ech1591] Length = 689 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 143/562 (25%), Positives = 253/562 (45%), Gaps = 13/562 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLP 454 E+ +A + + + + R ++ P + G ++ + G + Sbjct: 122 ERQKAREQMKIAAAVYESTQEAIIVINTSRSIISINPAFTRLTGYSAADVVGQPSYIFRS 181 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D F T + V G E R D + I I + ++ G + Y+G Sbjct: 182 DRHDAD---FYTAMWRTVDED-GVWVGEMWDRKKDGSDYLKEITINVIKDAAGTPINYVG 237 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + +DIT++KK I A D +T +PNR F D+L ++ + +M+ID+D Sbjct: 238 VFSDITQRKKQEALIWRQANYDAVTTLPNRHHFQDKLERAVEHAKQSGR-PMALMLIDLD 296 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K +ND LG GD +L++++ R+ + ++ D +ARL G+ F IIL + + A Sbjct: 297 HFKSVNDSLGHRAGDALLLAVSNRLTDCVQGADTIARLGGDEFAIILTDLHQNGDSGCLA 356 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + +A P N+ + V+ASIG A + + T E+ KNA+ AMY AK G N Sbjct: 357 RTLLAQLAQPFNIDGESMLVSASIGIALFPNDSDTLEELFKNADQAMYAAKSAGRNCFNY 416 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + R+ + DL A++ + + Y PII L ++V EAL++W HP G I Sbjct: 417 YTPALHQAARARLRLTNDLRTAIQCGQFEVYYQPIIELSTNKVVKAEALVRWRHPIRGMI 476 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S +EF+ +AE+ +I + ++ + + WR P + IN + L + E Sbjct: 477 SPAEFIPLAEDTGLIVPLGDWVARQAITQLAQWRKIF-DPHFQVAINQSPVQLRSKDFTE 535 Query: 813 -GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++ + + + +E +++ R L R GI + +DDFGT S L+ Sbjct: 536 MTWVQELAQHGLEGNAVIIEITEGLLLNAESRVNDNLHLFRDTGIQIAIDDFGTGYSSLA 595 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 YL D +K + S + + +II MA ++ ++A+ + + L R+G Sbjct: 596 YLRKFDIDCLKIDRSFVEDLDGVGFELCVAIIAMAHSLGLKVVAEGVETQQQCDTLARIG 655 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 CDY Q + P+ + LL Sbjct: 656 CDYAQGFLFSRPVPAPELTILL 677 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 4/135 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 ++ + + + VT P I G M G R++ Sbjct: 4 SAWNSESLFQAILDRCPVGIAVINYDGHYVTVNPAYGAIYGYTQEEMAG--RSFTMVFPE 61 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + RD+ F+ G L E+ V D + P + R + + D Sbjct: 62 SARDSVLARHRQFLDE-GGTLGGEWTVMRRDGVILTIWSESVPFAQHGHRADRLVYVL-D 119 Query: 519 ITEQKKSLEGILCNA 533 ITE++K+ E + A Sbjct: 120 ITERQKAREQMKIAA 134 >gi|153833810|ref|ZP_01986477.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio harveyi HY01] gi|148869868|gb|EDL68836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio harveyi HY01] Length = 815 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 148/554 (26%), Positives = 269/554 (48%), Gaps = 13/554 (2%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + I G A+ + G N L H +DR+ Sbjct: 267 QLSLASKIFDNSHEGMVITDRKANILDVNSAFTHITGYAAEEVIGKNPNILRSGH-HDRE 325 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + +G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 326 FYQQLWRQL--ESKGQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR + L ++ + + +DID +K IND Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHA-FATLFLDIDHFKHINDS 442 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F IIL + + ++ D + Sbjct: 443 MGHFCGDQLLTKLAERLQDVLHLRAHVARIGGDEFVIILPNIESDSQLIDTIEDILCLFN 502 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P + + E + ++ S+G A + S +LKNA+ AMY AK G N + Sbjct: 503 RPFEVSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V ++ L A+E ++L+L Y P L E+VG+EAL++W HP G IS ++F+ Sbjct: 563 KSVSHVRMQSALHEAIEKNQLHLAYQPQYNLSANELVGVEALLRWQHPDLGMISPADFIP 622 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I++I ++LE+ +W D + +N+++ L ++ + A++ Sbjct: 623 IAEKTGLIQSIGKWVLEQACLQGRAWLDNGIEFG-KLAVNVSALQLQQSDFISKLGAILK 681 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + R++L +ES ++ +P+++ L LR++GI ++LDDFGT S LSYL +P + Sbjct: 682 ETEFPAHRLELEITESFLLIDPQQAIASLNLLREMGIEISLDDFGTGYSSLSYLKGLPIN 741 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ S AI+ +II M + + ++A+ I + + L GC Y Q Sbjct: 742 KLKIDRSFVSDVPSNTDSNAIVNAIIAMGQTLSLKVVAEGIETDEQAQYLFERGCIYGQG 801 Query: 938 SHVASPLGFNSILK 951 ++P+ + K Sbjct: 802 FRFSAPVRAEKLFK 815 Score = 41.9 bits (97), Expect = 0.57, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 50/194 (25%), Gaps = 7/194 (3%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 P W+ + N +I L + + T + Sbjct: 85 YCPVWLP-SGELFAALALVHPTEQNTVISGWLSALAGRVGFDVAQTYHKEQKRHDVQLPE 143 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + + D W T + + + G Sbjct: 144 LLPSLQEFIDCLE---DHTWIKSTDGRYAMTNRSVEDSWQMTGSEIVGKND--FELFSSR 198 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 F + E + +N W+ P+ N G+++ +G+ ++ Sbjct: 199 RAKKFIDTDQLVIATGSQNTVEECTLIDDNNNPTWLETIKSPIRNQTGELIGILGMTRNV 258 Query: 520 TEQKKSLEGILCNA 533 T ++K +E L A Sbjct: 259 T-RRKMVETQLSLA 271 >gi|295798109|emb|CAX68931.1| Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) precursor [uncultured bacterium] Length = 944 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 134/581 (23%), Positives = 269/581 (46%), Gaps = 9/581 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++Q + ++ S D + ++ + + P ++G + Sbjct: 369 VALVQDITDQVRIEHERIRSEQKYKGLYNSSRDGILFLNMNGNIIDANPAFLEMIGYSRE 428 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + R I+ + + YE R D + +R +S Sbjct: 429 EVIGVNQ--FHITPPQWHSLERDIIKNQISMTGYSPIYEKEFRRKDGSATPVTVR-MWIS 485 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +G +DI+E+KK+ E + ++ D LT +PNR F+DRL + ++A Sbjct: 486 KESGLTAGMWCTVHDISERKKTQEQLTHLSYYDVLTDLPNRMLFVDRLQQAI-IAARYAG 544 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ I +D +K++ND LG VGD +L + +R+ L+ + R++G+ F ++L + Sbjct: 545 TAVAILFIGLDHFKRVNDTLGRTVGDHLLQEVAKRLKTCLEEMQTVTRVAGDEFAVLLPN 604 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + + + P + + E+ ++ IG + + + +L+NA AM Sbjct: 605 VEKADDAINICNQIFFAFKEPFKIDDHELFLSCCIGISLFPTDGKEPEILLRNANAAMDR 664 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + + ++ L AV+ +EL LVY P I L +I+G+EAL Sbjct: 665 AKGFGRNQYRLYSATMHEKTHERFILENSLRHAVDRNELCLVYQPQINLSTGDIMGVEAL 724 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G I+ +EF+ +AEE +I +I+ +++ W + PI + +N+ Sbjct: 725 VRWKHPELGLITPTEFLPLAEETGLIVSIDDWVMREACLQAKKWLEM-GFSPIRMAVNLT 783 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ ++ + ++ ++ +T SP +++ +E V+M N E + L +L +G+ +++D Sbjct: 784 ARQFQYTDVVDSVKKILRETSLSPYNLEIELTEHVIMQNVEETVQCLKQLSDMGVKISID 843 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P ++K + + + AI+++II +A +++ ++A+++ Sbjct: 844 DFGTGYSSLSYLKRFPIHSLKIDEAFVRDITTDPDDAAIVKAIISLAHHLKLEVVAENVE 903 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 E L CD +Q + P+ N LL + LV Sbjct: 904 TEPQRMFLKTEQCDRMQGFLYSRPVAPNVFTDLLTTQNKLV 944 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 42/143 (29%), Gaps = 2/143 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 ++ + + + +R S + ++ + + +LG + + Sbjct: 245 MEVITEKKKALEALAESEKRFRTYFNLSLLGIAIISPLKGWLEVNDKLCELLGYSRDEL- 303 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 W+ + D D + R + IR + S+ Sbjct: 304 -KSMTWVELTYPEDLVQDLKHFDLLFSGKVDSYSLSKRFIRKNGDMMHASTNIRCVRKSD 362 Query: 507 GDILRYIGIANDITEQKKSLEGI 529 G + ++ + DIT+Q + Sbjct: 363 GSVDYFVALVQDITDQVRIEHER 385 Score = 63.4 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 4/146 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + +I +V+ F + + E+ L + + + D + + + L Sbjct: 115 VLSRLISYVIQRNKFEEAVKKGEEQLKLFIEHAPAAIAMLDRNLNYLVISRRWVEDFKLQ 174 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 S ++ G + D ++ +L+ + + R + +F AD W+ +RP Sbjct: 175 SQNIIGKNHYD---VFPEIPDRWKEVLNCALEGQVQRSEEDF-FIRADQTIQWVRWEVRP 230 Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527 I + ITE+KK+LE Sbjct: 231 WYERRDVIGGVVIFMEVITEKKKALE 256 >gi|254237481|ref|ZP_04930804.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126169412|gb|EAZ54923.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 760 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 142/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%) Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + D RQ+ AV + + V D V P I G S + G L Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D+ ++ + + E R + + + IR + N G + Y+G+ Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRVVRNDQGQLTHYVGVF 314 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +D++ K+S + A D+LTG+PNR +R+ L+ D + +++ID+D + Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD +L +++R+ L +L+RL G+ F I++ ++ + +A + Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P ++ + I ++AS+G + + ++++A+ A++ AK G N + Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ V ++ L A+++ EL + Y P+ L IVG+E+L++W HP+ G + Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE +I A++ ++L+R R + W+ + F+ +N++S+ L E + Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ P ++L +ES VM + E+S LL RLR +G++L +DDFGT S L L Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P +K + + G AI R+I+ +A+++ ++A+ I + L GC Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731 Query: 933 DYIQDSHVASPLGFNSIL 950 D+ Q P ++ Sbjct: 732 DFGQGYWYGRPQPAEALR 749 Score = 140 bits (354), Expect = 9e-31, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + AW + + + +L + L +L+ +++ Sbjct: 17 IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + +R + A+ D +WDWD+V DR+ +P A ++GLA + PI W +H Sbjct: 76 LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + L + +R+R D + W+ R R + ++ G L Y G+A DI Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195 Query: 520 TEQKKSLEGILCNA 533 T Q+ + + A Sbjct: 196 TLQRLKEDHLRQAA 209 >gi|171060138|ref|YP_001792487.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170777583|gb|ACB35722.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 704 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 143/586 (24%), Positives = 275/586 (46%), Gaps = 13/586 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++ V + ++ + + R AV G+ VWDWD+ VT + +LG Sbjct: 112 VVHARVANVLRLYRDNAENLQRNEARWIFAVEGAEQGVWDWDLREHSVTLSQQWRILLGD 171 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G+ + W +H +D + LD + E R+R D + W++ R Sbjct: 172 DEGAGDTSVDAWRARVHPDDAAAVQRRLDRHRRGISSGYESEHRMRCGDGSYVWVLEGGR 231 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + G +R IG +DI+ +K++ AF D +T +PNR+ ++ L L + Sbjct: 232 VVQHDEAGRPMRMIGTLSDISRRKEAEAQAFSLAFYDPVTELPNRRRLVELLRFSL-VGD 290 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 T+ ++D+D +K +ND G VGD +L + R+ ++ DI+ARL G+ F + Sbjct: 291 QLGQGSATLCLVDLDHFKLVNDAHGHDVGDQLLRQVAVRLKACVRQQDIVARLGGDEFAV 350 Query: 620 ILISEN-----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEM 673 +L+ E + + +A P + + +AS+G + + + ++ Sbjct: 351 LLMHERRSAVSPAAAAEAAGAKLLAVLAEPYAIGDHLHHCSASMGVVAVDADKAEQAEQL 410 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731 LK A++A+Y AK G + F + + ++ +L A+ + LVY + Sbjct: 411 LKWADIALYEAKRAGRGCLRFFDPAMQAAVEARSALEAELRTALACRQFQLVYQLQVGDR 470 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + G EAL++W HP+ G I +EF+ +AEE +I + +LE++ + +W A++ Sbjct: 471 SAAL-GAEALVRWHHPQRGVIGPTEFIALAEETGLIVPLGRVLLEQVCEQLCAWERDADL 529 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +NI++++L + + + + A +++T R+KL +ES ++G+ + + RL Sbjct: 530 DDLTVALNISARELHEPDFVDFVLATLARTGAPVRRLKLELTESALVGDVDDIAARMHRL 589 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909 R G+ +LDDFGT S LSYL +PFD +K + S + E + R+I+ +A ++ Sbjct: 590 RDHGVGFSLDDFGTGFSSLSYLKRLPFDQLKIDRSFVRDILEDTVDARLSRAIVALAASL 649 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +++A+ + L GC Q P+ +L+ Sbjct: 650 GLSVVAEGVELAAQGDMLREFGCRQFQGFLYGVPMPAAEFSSVLRA 695 >gi|253699121|ref|YP_003020310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M21] gi|251773971|gb|ACT16552.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M21] Length = 853 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 145/579 (25%), Positives = 266/579 (45%), Gaps = 17/579 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASG 443 I+ + Q + S E+ V + V+ V +P I G Sbjct: 265 IRDISIRKNAEQALLSSEEQCRTIVSNINEYVYSVRFEEGDITSVYHSPKCFDITGYTPE 324 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + W IH DR+ L+ R+ D W++ Sbjct: 325 EYYRDPLLWFTMIHEEDRNLVVEFLNGIFAG-LDHEPIRHRIIHKDGSVRWIVNNCAVQR 383 Query: 504 NSNGD---ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 GD I R G D+T+ K++ E I A D LT +PNR + +R+ ++ + Sbjct: 384 QRRGDRLSITRLDGFILDVTDIKRAEENIFFLAHHDPLTKLPNRSTLYERMEQVICAAQK 443 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ +DID +K+IND +G VGD +L S+ +R+ + + D+++RL G+ F ++ Sbjct: 444 SSR-NVALLFLDIDGFKQINDSMGHDVGDRLLQSVAKRLSDCTRSCDVVSRLGGDEFVVM 502 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L + K I +L +TVT SIG + + +LK+A++A Sbjct: 503 LWDCGEAETTVVA----EKVINAGFPVLGSNVTVTPSIGISIFPDDGRDYLTLLKHADIA 558 Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MYHAK GGN+ + F + +R M++ +L A++ E L Y P + L + G+ Sbjct: 559 MYHAKKSGGNNFQFFTHKLNEIAHERFMLEAELRRALDREEFVLYYQPKVDLSTGKFSGM 618 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP G + F+ IAEE ++ I+ +++ + R I W+ Q + + Sbjct: 619 EALIRWQHPAHGLMLPESFIGIAEESGLLTQISKWIIPTVCRQIQQWQQQGIN-SVSAAV 677 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++ + E ++ + +T +P ++L +E+ +M +P+R + ++ +G+ L Sbjct: 678 NLSASFFQHPDFEETIEESLLQTGIAPECLELELTEATIMSDPQRVLGSMAAMKALGLQL 737 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S LSYL +P D +K + S + A++R++I + ++++ +IA+ Sbjct: 738 SIDDFGTGYSSLSYLKKLPVDKLKIDQSFIHNIARDADNAAVVRAVISIGRSMQLRVIAE 797 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + L G + Q + + PL + LLK+ Sbjct: 798 GVENASQLAWLQAEGSEEAQGYYFSRPLPVAKMTSLLKQ 836 Score = 43.0 bits (100), Expect = 0.29, Method: Composition-based stats. Identities = 10/133 (7%), Positives = 39/133 (29%), Gaps = 12/133 (9%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPI---RNWLP 454 + R + D + + + P + +LG + G ++ Sbjct: 152 ALQRSEARYRRLFETAKDGIMIVEADSGAIAEVNPFLVDMLGCRRDELLGKTVWELHFFA 211 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 ++ D + + + ++ + + + + ++++ Sbjct: 212 HVVPGAADF------KAMQQKEFFHGDDLQLATVRGRDIPVEVVSNCYQSEQSSVVQF-- 263 Query: 515 IANDITEQKKSLE 527 DI+ +K + + Sbjct: 264 NIRDISIRKNAEQ 276 >gi|330963830|gb|EGH64090.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 825 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 149/581 (25%), Positives = 273/581 (46%), Gaps = 12/581 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 +++ G + + SQ + + + + V D + I Sbjct: 234 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 293 Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G R H D + ++ G Q E R + + + + Sbjct: 294 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 349 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + N + ++ + DI+ K + + A D LTG+PNR F RL + L Sbjct: 350 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYRAHHDPLTGLPNRTLFESRLQSALLH 409 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S +L V+ +D+D++K IND LG + D +L + R+ E L+ D +ARL G+ F Sbjct: 410 SEESGSL-GAVLFLDLDRFKHINDSLGHPIRDLLLKGIAHRLKETLRDIDTVARLGGDEF 468 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L A + + P E ++ ++ SIG + + + ++KNA Sbjct: 469 IVLLPGLLQPSDAKAIANKLLACFSTPFEAGEHDLYISPSIGSCVFPTDGTDVATLVKNA 528 Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY +K +G N VES+ S+R+ ++++ A++ ++L L Y P I ++ + Sbjct: 529 DAAMYRSKAQGRNRVESYTRDLTEQASERIALEQERRRALDRNQLSLAYQPKISILTHTL 588 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EALI+W HP +G + F+ +AEE MI I ++LE+ R + +WR P Sbjct: 589 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGEWVLEQACRQMGAWRK-TCKPFGP 647 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+A L L E ++ L++ P ++L +E+ +M + + +L +L+++G Sbjct: 648 MSVNLAGAQLRQPNLVERIEQLLTDNGLMPDCLQLEITENFIMSQTQDALAVLHKLKQLG 707 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 + L +DDFGT S LSYL +P D +K + S + G E AI+R+II + ++++ T+ Sbjct: 708 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 767 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953 IA+ + + L+ GC+ IQ ++ PL + + L Sbjct: 768 IAEGVETREQQQFLSEEGCEQIQGYIISLPLQPDEFSERFL 808 Score = 43.0 bits (100), Expect = 0.25, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 34/147 (23%), Gaps = 15/147 (10%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + R + D + I + GL+ + G L Sbjct: 7 REALRLSEGRFASVFAQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEVIGKTPTELDL 66 Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 L E R + Q ++ +P G + Sbjct: 67 WAVPGIGPKVLKQL-----QTGNIHNLEIPFRRKNGQTFSGLMSAQPF--EQGSTPAVLV 119 Query: 515 IANDITEQKKSL------EGILCNAFQ 535 I DIT K + E AF Sbjct: 120 IVRDITRLKLAQQQLQLSEEKFAKAFH 146 Score = 41.9 bits (97), Expect = 0.50, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 6/152 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 +++ + Q + E+ + A + D + + I G + Sbjct: 118 LVIVRDITRLKLAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYS- 176 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 +H D R+ L + + R+ + + P+ Sbjct: 177 -ELHCLEHYTFDLGIWADLSE-RSKLTEQLEQHGVVHGFRARLCNVNGSIRVCELSSHPL 234 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 S L + I+ DITE + E + A Sbjct: 235 LISGDACL--LTISRDITESQLMQEKLHLAAT 264 >gi|34496488|ref|NP_900703.1| hypothetical protein CV_1033 [Chromobacterium violaceum ATCC 12472] gi|34102342|gb|AAQ58708.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 936 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 153/586 (26%), Positives = 271/586 (46%), Gaps = 14/586 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDI 434 + + F I V + ER LA + + + D R + Sbjct: 350 VAMRDAFGRINAVWRMVRDISEKRAAEERVQLAAKVFENTVEGIMITDADRRIRSVNRAF 409 Query: 435 ATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 I G + G + L H D + + S + G Q E R + + + Sbjct: 410 TEITGYTQHEVLGQKTSILSSGRH--DEPFYEQMWQSIAEH--GSWQGELWNRRKNGEVY 465 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + I + NS G+I Y+ I +D+TE+K + E I A D LT +PNR DR+ Sbjct: 466 PEWLAINAVRNSLGEITHYVAIFSDLTERKAADERIQFLAHFDVLTSLPNRIHMQDRVEL 525 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 + + D+ +++D+D++K +N+ LG + GD +L RI ++ ++LAR Sbjct: 526 AIHNAVRDNQRLAL-LLLDLDRFKTVNESLGHSAGDTLLQVAADRIKSVMAPGEMLARQG 584 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F I+L ++ + A A +R A PI L +T+T SIG + + + Sbjct: 585 GDEFIILLPVISDPGEAALAAERVRDVFANPIELHNHVLTITPSIGISVYPDDGRDYETL 644 Query: 674 LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 ++NA+ AMYHAK G N + + ++ + + I+ L A+E E L Y P + + Sbjct: 645 VRNADAAMYHAKSSGRNSYKFYTADLNARAREILAIESQLRFALERDEFVLHYQPQVEME 704 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 IVG EALI+W+HP G + F+ +AEE I I +++ R ++ WR Sbjct: 705 SGRIVGAEALIRWNHPSLGLLGPVRFIQVAEERGFIVQIGNWVIAEATRQLVEWRRAGL- 763 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 P + + IN+++ +L ++ + + + + +ES++M + + + + + Sbjct: 764 PELTLAINLSALQFRQPDLALQVKQALESSGLPGHALDIEVTESIIMEDAQATIQTIDNM 823 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 + +G+ L++DDFGT S LSYL D +K + S + AI R+II MAKN+ Sbjct: 824 KNMGLRLSIDDFGTGYSSLSYLKRFKADKLKIDRSFVRDIPQDADDSAIARAIINMAKNL 883 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++A+ + + L + GCD++Q +A PL + +LL + Sbjct: 884 NMQVVAEGVETMEQWQFLEQEGCDFVQGYLIAKPLPADDFAELLHK 929 Score = 52.6 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 49/159 (30%), Gaps = 2/159 (1%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 LV + + + + + + D + + + P Sbjct: 227 LVDELRAKTLALEADIARRREVEDALRRSENKYRELFWSNLDGIVISSLDGQVIDANPAF 286 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 ++ + + +N+ + R LD+ V ++E + Sbjct: 287 LNLMCYSLDQL--KQQNFWSLVAEESEALERFNLDNKVLRFGYCDEFEATYLNRFDNQVP 344 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + ++ M ++ G I + DI+E++ + E + A Sbjct: 345 VSVKTVAMRDAFGRINAVWRMVRDISEKRAAEERVQLAA 383 >gi|242278997|ref|YP_002991126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio salexigens DSM 2638] gi|242121891|gb|ACS79587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio salexigens DSM 2638] Length = 938 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 141/587 (24%), Positives = 267/587 (45%), Gaps = 13/587 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRV-TTTPDIATILG 439 + F + V + + + E + D W+ W V +P I G Sbjct: 357 LTFAFVTDVSGYKMMEKALRASEEEYRTIAEYTFD--WEMWIGPTGAVKYVSPSCERISG 414 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 +H NDR+ ++ L G + R+ D W+ + Sbjct: 415 YPKAYFMEGPVRVEHILHKNDREFWQKALRGTFPSADGT---DMRLFRRDGLLRWVSLTG 471 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + +G L DIT++K + + A D LTG+ NR DR+ ++ S Sbjct: 472 HQVFADDGTSLGLRISLRDITKRKFMEKQLQYEALHDPLTGLANRTLCCDRILQAVERSR 531 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 DN V+ +D+D++K IND LG +GD +LV +++R+ + ++ D ++R G+ F + Sbjct: 532 RRDNYYFAVVFMDLDRFKIINDSLGHNIGDKLLVEVSKRLLQTIRELDTVSRFGGDEFIV 591 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + +R + PI + +I + AS G + E+++NA + Sbjct: 592 VLEELASPREGIRIVRRIRDCLNDPIMIEGHKINIAASYGVLLSPTEYDKPEEIIQNANV 651 Query: 680 AMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIV 736 AM+ AK G + ++ F + ++ DL A+ + ELYL Y PI L + +V Sbjct: 652 AMHQAKESGRDRIKVFNKRMLEEAVQAMQLESDLRAAMLSGDELYLDYQPIYSLQSQSVV 711 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IF 795 G EALI+W+HP+ G + EF+ +AEE +I + +++ R + SW+ + + Sbjct: 712 GFEALIRWEHPRRGLVMPGEFIPMAEESGLIFELGSWVVSEACRQMKSWQVNYDSASEMM 771 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + INI+ + L + + + +S+ +K+ +E+ +M ++S +L RL+ G Sbjct: 772 MSINISPRQFSQPALVDNILSKLSEFDLPARNLKIEITETAIMERAKQSVDMLNRLKSAG 831 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913 + +++DDFGT S +S L P D +K + S + E + + I+R+I+ +A N+ + Sbjct: 832 VLVSIDDFGTGYSSMSNLQEFPLDQLKIDLSFVRKMNESTENLEIVRAIVNLAHNLGLNV 891 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 +A+ + L +GC++ Q + P+ + + K L Sbjct: 892 VAEGVEEIEQQDALRDLGCEFGQGYLFSKPISRSKVEAFFKNEIKLS 938 Score = 48.4 bits (114), Expect = 0.006, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 21/156 (13%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +L ++ + +R V + + + D + P T++GL + G Sbjct: 245 EILMREKAARSLVKSEKRYRALVETTAEGFFMIDESSILLDVNPAFCTMIGLTREEVLG- 303 Query: 449 IRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 D T + F ++E ++ + + I + S+ Sbjct: 304 ----------GDIGAILGDTAAERFRNNEGHSHKFELSFVNSNGREVDIFINATNLFESD 353 Query: 507 GDILRYIGIANDIT-------EQKKSLEGILCNAFQ 535 ++ D++ + S E A Sbjct: 354 -NVKLTFAFVTDVSGYKMMEKALRASEEEYRTIAEY 388 >gi|83648653|ref|YP_437088.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83636696|gb|ABC32663.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 1263 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 157/579 (27%), Positives = 272/579 (46%), Gaps = 14/579 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHG 447 L T + + ++ AV + + + + R V P I G +S + G Sbjct: 543 LRTRHAREKAEESLRLRNRAVESTPNGILILNARRPDLPLVYVNPAFERITGYSSDEVLG 602 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +L D D R L + R R + D W + I P+ + Sbjct: 603 KGPFFLQS--DIDEDRRRESLHFLIRNREEGCVL-LRNQRKDGSPFWNELHIAPVYDDRR 659 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + ++ + ND+TE + E + A D+LTG+PNR DRL L +A + + + Sbjct: 660 MLTHFVAVINDVTESRHYQEQLEYQATHDDLTGLPNRNMMRDRLGQELWRAARNKH-KVA 718 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID++K IND LG GD +L + +R+ + + D + R G+ F IIL + Sbjct: 719 IVFLDIDQFKLINDSLGHNAGDAMLKVIAKRLTGMARASDTVVRYGGDEFVIILPDISPP 778 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 K+A F + + IA I L R+I V+ASIG + + ++KNA++AMY AK Sbjct: 779 EKVASFISRLMEVIAQSIQLDHRDIHVSASIGVSIYPQDGDHPEVLIKNADIAMYLAKEE 838 Query: 688 GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N F + +R+ ++ L A++ + +L Y P + L I G+EAL++W Sbjct: 839 GRNRFHFFTEDLNKTAMERLDLEVRLRAALDKQQFHLEYQPQVDLRSGVITGVEALLRWR 898 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 P+ G+I +F+ IAEE +I AI ++L +W D P+ + IN+++K L Sbjct: 899 EPELGDIPPGKFIPIAEETGLIGAIGEWVLHAACVQAKAWSDLVAH-PLTMSINLSAKQL 957 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + ++++ T I++ +ES +M N R L L++ G+ L +DDFG Sbjct: 958 TMARFDSALHSILTDTAVDCRYIEIELTESAIMRNVNEMRERLNILKEQGLKLAVDDFGV 1017 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S S+L FD +K + + + +I R+++ MA+++ ++A+ I E Sbjct: 1018 GYSSFSHLRSFSFDRLKLDITFVRDITTDPNTASIARTVMSMARSMHMQVVAEGIETEAQ 1077 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 ++ L R+GCD Q + P SI LL P +++ Sbjct: 1078 LRYLQRLGCDVGQGFFLGRPACAQSIEALLAS--PRIRS 1114 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 3/130 (2%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 R + +++ W G + ++ G + + Sbjct: 43 EARFQYILDDIPELICRWKPDGAITYVNAQYCRYFGSSRSALIGK--SIFTLSPPEECSV 100 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + Q E RV W++ R + +S G +L + I DIT+ + Sbjct: 101 IHEQMRR-ISQTSPVSQQERRVIDGRGAQRWLLWTDRGIFDSQGRVLEFQSIGRDITDSR 159 Query: 524 KSLEGILCNA 533 ++ E I A Sbjct: 160 ETNEQIGSMA 169 Score = 41.5 bits (96), Expect = 0.73, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 33/139 (23%), Gaps = 29/139 (20%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + R V D + D P I G + G Sbjct: 272 ALRQSENRLGALVSAEADSILVIDDAGVIRFANPAAERIFGKPKEMLIGQAFGV------ 325 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + +++ +R +P+ ++ I ++ +D Sbjct: 326 -----------PCLTGDYAEVEF------PRGGKRIAEMRAQPLPWND--IQAHLITLHD 366 Query: 519 ITEQKK----SLEGILCNA 533 +T+ +K A Sbjct: 367 VTDHRKREHLLQRRNRTLA 385 >gi|218889025|ref|YP_002437889.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas aeruginosa LESB58] gi|218769248|emb|CAW25008.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas aeruginosa LESB58] Length = 760 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 142/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%) Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + D RQ+ AV + + V D V P I G S + G L Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D+ ++ + + E R + + + IR + N G + Y+G+ Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRVVRNDQGQLTHYVGVF 314 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +D++ K+S + A D+LTG+PNR +R+ L+ D + +++ID+D + Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD +L +++R+ L +L+RL G+ F I++ ++ + +A + Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P ++ + I ++AS+G + + ++++A+ A++ AK G N + Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ V ++ L A+++ EL + Y P+ L IVG+E+L++W HP+ G + Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE +I A++ ++L+R R + W+ + F+ +N++S+ L E + Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ P ++L +ES VM + E+S LL RLR +G++L +DDFGT S L L Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P +K + + G AI R+I+ +A+++ ++A+ I + L GC Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731 Query: 933 DYIQDSHVASPLGFNSIL 950 D+ Q P ++ Sbjct: 732 DFGQGYWYGRPQPAEALR 749 Score = 140 bits (354), Expect = 1e-30, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + AW + + + +L + L +L+ +++ Sbjct: 17 IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + +R + A+ D +WDWD+V DR+ +P A ++GLA + PI W +H Sbjct: 76 LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + L + +R+R D + W+ R R + ++ G L Y G+A DI Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195 Query: 520 TEQKKSLEGILCNA 533 T Q+ + + A Sbjct: 196 TLQRLKEDHLRQAA 209 >gi|189425831|ref|YP_001953008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189422090|gb|ACD96488.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 933 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 152/659 (23%), Positives = 271/659 (41%), Gaps = 16/659 (2%) Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362 AR L + + ++ + L + + R Sbjct: 277 DAYAPVRTARTWFIIATLLGMAVAVLLVL-----FMMRLLTRPLAQLASHVAELPEK-RG 330 Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 I + G + + V +Q + + +R + + D + Sbjct: 331 AERFIHLPVNGEIGNLTGAFN----SMVEEIDQSTQALRNSEQRYRIVTEFTNDFTYWRR 386 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQY 481 +P + G + + IH DR+ F + + Sbjct: 387 PDGSFEFISPACLEVTGYSREELFAQPSLMEEMIHPGDREMFDRMAAESGEEINCNNEEL 446 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E+R+ W+ RP+ + NG L G +DITE K+ + + D LTG+ Sbjct: 447 EYRIITKGGNTRWVRHTCRPIVDENGVFLGRRGCRSDITEHKQLADQVSHMVLHDLLTGL 506 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR F DRL D+ V+ ID++K IND LG GD +L+ + R+ + Sbjct: 507 PNRSLFADRLFLATAQRERGDHDLTVVLFFGIDRFKLINDTLGHETGDRLLIMVAERLRK 566 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 LL D L R G+ F IL + + + + S+A P N +++T++ SIG A Sbjct: 567 LLHPNDTLCRFGGDVFAFILPGRESRHEAVTMSYRVLASLADPFNPSGQQVTLSGSIGIA 626 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSE 719 + + KNAE AMY AK G N + ++ + + + + N + Sbjct: 627 ISPQDGTDAETLQKNAETAMYDAKRSGKNSFRFYAREMNAQAAEMLRLDNSMPQGLVNGD 686 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 YL Y P + L D +V +EAL++W HP+ G I F+ +AEE I + ++L Sbjct: 687 FYLHYQPQLNLEDNSVVAVEALLRWRHPELGMIPPDRFIPLAEESGFIIKLGEWVLRTAC 746 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 +W+ P+ I +N++ + + + + +S + SP ++L +ES+++ Sbjct: 747 AQCAAWQQDGPA-PLRIAVNVSGCQFNEPDFVDMVSTALSSSGLSPEYLELELTESLLIS 805 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897 N +++ L L+ +GI L +DDFGT S L+YL + P D +K + S + A Sbjct: 806 NEQQALQKLQLLKSMGIYLAIDDFGTGYSSLAYLKHFPLDRLKIDKSFINDILTDPDDAA 865 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +II M +++ +IA+ + + L GCD +Q +++ PL + + + R Sbjct: 866 ITEAIIAMGHSLKLKVIAEGVETREQLLFLEDRGCDEMQGYYLSKPLSEHDLKVFITAR 924 >gi|15595482|ref|NP_248976.1| hypothetical protein PA0285 [Pseudomonas aeruginosa PAO1] gi|116054012|ref|YP_788454.1| sensory box GGDEF domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14] gi|313112106|ref|ZP_07797889.1| putative sensory box/GGDEF domain-containing/EAL domain-containing protein [Pseudomonas aeruginosa 39016] gi|9946128|gb|AAG03674.1|AE004466_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115589233|gb|ABJ15248.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas aeruginosa UCBPP-PA14] gi|310884391|gb|EFQ42985.1| putative sensory box/GGDEF domain-containing/EAL domain-containing protein [Pseudomonas aeruginosa 39016] Length = 760 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 143/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%) Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + D RQ+ AV + + V D V P I G S + G L Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D+ ++ + + E R + + + IR + N G + Y+G+ Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRAVRNDQGQLTHYVGVF 314 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +D++ K+S + A D+LTG+PNR +R+ L+ D + +++ID+D + Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD +L +++R+ L +L+RL G+ F I++ ++ + +A + Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P ++ + I ++AS+G + + ++++A+ A++ AK G N + Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ V ++ L A+E+ EL + Y P+ L IVG+E+L++W HP+ G + Sbjct: 493 RVLTARARAHVQVESALRHALEHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE +I A++ ++L+R R + W+ + F+ +N++S+ L E + Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ P ++L +ES VM + E+S LL RLR +G++L +DDFGT S L L Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P +K + + G AI R+I+ +A+++ ++A+ I + L GC Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731 Query: 933 DYIQDSHVASPLGFNSIL 950 D+ Q P ++ Sbjct: 732 DFGQGYWYGRPQPAEALR 749 Score = 140 bits (354), Expect = 1e-30, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + AW + + + +L + L +L+ +++ Sbjct: 17 IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + +R + A+ D +WDWD+V DR+ +P A ++GLA + PI W +H Sbjct: 76 LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + L + +R+R D + W+ R R + ++ G L Y G+A DI Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195 Query: 520 TEQKKSLEGILCNA 533 T Q+ + + A Sbjct: 196 TLQRLKEDHLRQAA 209 >gi|219854353|ref|YP_002471475.1| hypothetical protein CKR_1010 [Clostridium kluyveri NBRC 12016] gi|219568077|dbj|BAH06061.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 567 Score = 537 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 149/559 (26%), Positives = 284/559 (50%), Gaps = 9/559 (1%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 S+ + A+ G+ +W+WD+ + + + + ILG + + + D+ Sbjct: 7 SNEQIYKRALTGANISLWEWDLEKCCIFFSDNFKNILGYNTENFKNLFDFIEEIVIPPDK 66 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + L F+ + EF++ + ++++ NS G+I+ G ND+T+ Sbjct: 67 LSAKNDLTFFIKGNTETYRSEFKISTKEKHIRSLLVKGAATRNSAGEIILLSGSINDVTQ 126 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K+ E I +A+ D+LTG+PNR F + L TILD ++ IDID +K +ND Sbjct: 127 KKRLEEYINYSAYYDSLTGLPNRILFRNDLKTILDNYK-----NGALIFIDIDDFKSVND 181 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD +LV ++ I ++ L RL G+ F +++ N+ ++ + + + Sbjct: 182 TFGHDYGDLLLVIFSQLIAMCIEPYGTLYRLGGDEFMLLIDKLNSYNELKKLCMEISHYL 241 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 P + E++I +T SIG A + +E+ K A+LA++ +K +G N F+ F Sbjct: 242 KNPFEVKEKQIYITISIGIALFPEDSSDVAELYKYADLAVFESKQKGKNTTTFFKKELFY 301 Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 R + +++L A+EN+ELY++Y P I ++ +++G E+L++W + K G IS EF+ Sbjct: 302 FYRRKLIIEQELKTAIENNELYILYQPQIDAVENKVIGFESLLRWKNRKLGFISPQEFIP 361 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 I E +I I ++L + + I + + I +N++ L +++ + + Sbjct: 362 ICESTGIIIDIGEWVLNSVCKMIYELQLKGFKIE-TISVNVSPIQLRNSDFITRLINICE 420 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 K SPS +++ +E ++ L L K G+ + +DDFGT S L+YL +P + Sbjct: 421 KNQISPSLLEIEITEGTLIDLYACKIKTLDELLKKGVRVAIDDFGTGYSSLNYLTILPVN 480 Query: 880 TVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 T+K + S + ++K A+++SII + K++ IIA+ + + + L +GC+ IQ Sbjct: 481 TLKIDKSFIDNIESKKNKAVIKSIINLCKSLNYNIIAEGVETKRQLDCLLHIGCNIIQGY 540 Query: 939 HVASPLGFNSILKLLKERF 957 + + PL N I +LKE+ Sbjct: 541 YFSKPLPVNKIENILKEKN 559 >gi|229130551|ref|ZP_04259507.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] gi|228652890|gb|EEL08772.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] Length = 885 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 28 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 84 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 85 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 138 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 139 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 198 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 199 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 258 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L+ + Q L T Sbjct: 259 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 318 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 319 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 376 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 377 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 433 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 434 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKK-PFAVMFL 492 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 493 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 552 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 553 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 612 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 613 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 672 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 673 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 731 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 732 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 791 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 792 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 851 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 852 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 879 >gi|95930084|ref|ZP_01312823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95133778|gb|EAT15438.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 928 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 140/566 (24%), Positives = 257/566 (45%), Gaps = 26/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 R A+ S + V G + H + Sbjct: 375 QQNHRLLQAIDQSPICILMTTCDGRPVYLNQFFKEKTGYSLDECS----------HPD-- 422 Query: 462 DNFRTILDSFVGYRRG---------RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + + + + G E +R+ D HW I I + + G Sbjct: 423 NPIYQFIQQRIPAQCGSNDGRNYDEPWLEELEIRSKDGGIHWERISISLVYDLKGQCSHL 482 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 I I DITE+KK+ + A D+LTG+ NR DRL + + ++++D Sbjct: 483 IVIGEDITEEKKNAQHFEFLATHDSLTGLANRLLLHDRLDQAILKAKRVHGTVF-LILLD 541 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K IND +G GD +L + R+ ++++ D + RL G+ F ++L Sbjct: 542 VDRFKMINDSMGHDNGDRLLQLIADRLLKVVRESDTVVRLGGDEFVVLLSEVETLDDALC 601 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNH 691 A A+ + ++ P + ER+I +T S G S+ ++S E+L++A++AMY AK Sbjct: 602 AAEAIHRELSEPFTVSERQIPLTVSAGICSYPDHGMSSLELLRHADVAMYKAKETHSQTC 661 Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + + + + ++ +L A+ +EL++ Y P + E+IVG EAL++W H G Sbjct: 662 IFESSMDGLVLESLELEAELRQAIVKNELHVYYQPKVDAGSEKIVGFEALLRWVHSDRGM 721 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS F+ +AE+ +I I L+++E + R + W DQ + + +N+++K +L Sbjct: 722 ISPGVFIPLAEQTGLIHEIGLWVIEDVCRQLRQWADQDYAI-VPVAVNLSAKQFQSVDLA 780 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + ++ S + +ES++M NP S ++ L+ +G+ L +DDFGT S L+ Sbjct: 781 KQVATILDSYHIDSSWFEFELTESMIMQNPLSSIRIMKELKDLGLRLAVDDFGTGYSSLN 840 Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P D +K + S + T+ A+ SII +A+++ IA+ + + L Sbjct: 841 YLRRLPLDYLKIDRSFIDDVTQDLSADAVATSIIGIARSLGMQTIAEGVETAEQLMFLKD 900 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 CD+IQ + P+ + LL+ Sbjct: 901 NNCDFIQGFYFYRPMPVDDATSLLER 926 Score = 50.3 bits (119), Expect = 0.002, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 46/169 (27%), Gaps = 11/169 (6%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDR 427 L V ++ + V + Q I E+ S + D Sbjct: 218 ALLWALGVAGLLFLRHLVQSRLRREDEVQQEIALSEEKYRALFRDSLIGIAIADCTSGRI 277 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHI----NDRDNFRTILDSFVGYRRGRLQYEF 483 + +A ++ + G + +H + G + + Sbjct: 278 IECNKKLAHLVERTPEELIGKPQ---DILHPKFEKDQGSAVTQTFKKHQDEAHGEVLGSY 334 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + Q + I+ + S G+ G+ D+TE+ K + Sbjct: 335 -LITKSGQLKDVEIQGGTV--SFGNQNYQFGLFLDVTERNKFEQQNHRL 380 >gi|296505729|ref|YP_003667429.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|296326781|gb|ADH09709.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 909 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 174/868 (20%), Positives = 349/868 (40%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 +I + + S F L + + R+ D F ++P Sbjct: 52 SYIIYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + S + + L+ + + A F +Y++ ++ I T Sbjct: 109 LFLFSFTFAFLYEI-----IYNRDLLEKLF-MLCDICIIVTAQFTLSYYLLIERTIHIFT 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILI--FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + I + + + +++ L+ + Q L T Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKK-PFAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ ++ LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLEQIATSNMKLARLAGDEFTILIENYKKKPDVQ 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|121608321|ref|YP_996128.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Verminephrobacter eiseniae EF01-2] gi|121552961|gb|ABM57110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Verminephrobacter eiseniae EF01-2] Length = 859 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 155/749 (20%), Positives = 299/749 (39%), Gaps = 22/749 (2%) Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWH 279 A A +L + + F + S ++ +W + + F M L Sbjct: 100 FGVAAACNLLHGMLLHFDAAHPPLLAGSADISLWLSSWARVAEVITLWFTAMRLSAPGLG 159 Query: 280 AKVGYITFSGIACIAIL-----FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + I L ++ L ++ + Sbjct: 160 RTWLAVACAITLAIVGLSLGPLPGWFAQVAGSALHQPLALALALALIVAATVLQRSARRN 219 Query: 335 ERAVLLIPAWILIFIWF---IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 ++ I AW + + + + + + V L+ + I+ Sbjct: 220 DQPRERILAWATMAFACGEITVGALGVHGSVASPLAHGLRVIAYALLYQAVFDAGIRRPF 279 Query: 392 ATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 A ++ + E R + V D+V+ D ++ P +G + G Sbjct: 280 ARIQEAESRLRESESRLARVVSAMPDMVFLKDADGVYLSVNPVFERFIGRPEHQIVGRND 339 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 FR + R+ + E A D P+ + +G + Sbjct: 340 --FDLTTPAQARQFRQNDQRAMQTRQPLVYEETLTFAEDGYQGRFETIKTPIRDLHGRVT 397 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 +G+ DITE+K++ + I AF D LTG+PNR+ LDRL + L ++ Sbjct: 398 GVLGVCRDITERKRAAQEIERLAFYDALTGLPNRRLLLDRLQRSIATCQRTHKL-GALLF 456 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----N 625 ID+D +K +ND LG +GD +L + R+ ++ D +AR G+ F ++L + Sbjct: 457 IDLDNFKDLNDTLGHDMGDQLLAQVATRLVASVRAADTVARFGGDEFVVMLEALAPDLRT 516 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + A + S+ P L + T SIG + +++ E+LK A+LA+Y AK Sbjct: 517 ATAQAEMVADKLLASLNQPFALDGGQHYSTLSIGVTLFGEQRLSVDELLKRADLALYQAK 576 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N F + ++ DL + +EL + Y P++ ++G EAL++ Sbjct: 577 AAGRNTQRFFDPDMQAAVNARSNLEADLRQGLARAELLVYYQPVVDHQA-RLMGAEALVR 635 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP+ G I ++F+ +AE+ +I + ++L+ + W + + I +N++++ Sbjct: 636 WRHPQRGMIGPADFIPLAEQTGLILPLGQYVLQTACAQLQRWSQHPDTAGLSISVNVSAR 695 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + + P R+KL +ES+++G+ E + + +L+ G+ LDDF Sbjct: 696 QFRQPGFVAQVLHQLKSHGADPRRLKLELTESLLLGDIEDTIARMAQLKSEGVGFALDDF 755 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D +K + S + + AI+R+I+ +AK+++ ++A+ + Sbjct: 756 GTGYSSLSYLKRLPLDQIKIDQSFVREVLADPNDAAIVRTILALAKSLDLQVVAEGVETT 815 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + L GC+ Q P+ Sbjct: 816 GQLSFLQLHGCEGFQGYLFGRPVPMEVFA 844 >gi|307825097|ref|ZP_07655318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307733845|gb|EFO04701.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 741 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 145/567 (25%), Positives = 260/567 (45%), Gaps = 18/567 (3%) Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455 E +A + + + + + + + I G ++ + G + Sbjct: 179 ESKRAEEELRIAAVAFEAQEGIMITNADKVMLRVNRAFTDITGYSAEELVGQMPHMFKSG 238 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H F + + R G Q E R + + I + +S+G + Y+G+ Sbjct: 239 RHSE---TFYAEMWECI-NRTGSWQGEIWDRRKSGDIYPKWVTITAVKDSDGTVTHYVGL 294 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI+ +K S E I A+ D LT +PNR+ +DRL L SA ++ ID+D Sbjct: 295 HTDISTRKASEEVIKQLAYYDPLTALPNRRLLMDRLQQALAASARSKKY-GALLFIDLDN 353 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKI 630 +K +ND LG +GD +L + +R+ + ++ D ++R G+ F ++L E + K Sbjct: 354 FKSLNDHLGHDMGDVLLQQVAQRLIDCVREGDTVSRQGGDEFIVMLEDLSGSTEEAAAKA 413 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + S+ L E T SIG + + + + +LK A++AMY AK G N Sbjct: 414 KTIGEKIITSLNQAYQLTSHEYRNTPSIGITLFINHQHEINMLLKRADIAMYGAKAAGRN 473 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + F + + ++ DL A+ ++ L + R D + +G EAL++W HPK Sbjct: 474 TLRFFDQNMQEAVTARAALEADLRFALTKNQFRLYFQRQARH-DGQTIGAEALLRWKHPK 532 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ +AEE+ +I I ++LE + W + + +N+++ Sbjct: 533 RGFVSPLEFIPLAEEIGLIIPIGQWVLETACAQLKRWESHPQTCNLQLAVNVSAHQFHQP 592 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + E + A+++KT R+KL F+ES+V + + + + L+KIG+S ++DDFGT S Sbjct: 593 DFTEHVFAILNKTAIKAHRLKLEFTESLVFDDIDDTIAKMQVLKKIGVSFSIDDFGTGYS 652 Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL +PFD +K + S + I+++II MA N+ IIA+ + E + Sbjct: 653 SLTYLTQLPFDQLKIDQSFVRNIGVKSTDTVIVQTIIGMATNLGMDIIAEGVETEEQLAF 712 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953 L GC Q + + + + L Sbjct: 713 LELHGCHIYQGNLIGKTMPQEEFERSL 739 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 49/142 (34%), Gaps = 4/142 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + R + + A +LG+ ++ R+ Sbjct: 54 ELQHARVSLEASHNRYLNLYEFAPVGYLTLTPEGKIIEINLTAAALLGVERNNLVN--RH 111 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + D D + +L + + + + +E ++ D+ + + P+ + + Sbjct: 112 FAGLVVPKDSDRWHRLLKNILEHEGEQKNFELMLKR-DDSYIHARLDCLPVITDDQTPVL 170 Query: 512 YIGIANDITEQKKSLEGILCNA 533 I DI+E K++ E + A Sbjct: 171 RI-TLTDISESKRAEEELRIAA 191 >gi|158522257|ref|YP_001530127.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfococcus oleovorans Hxd3] gi|158511083|gb|ABW68050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfococcus oleovorans Hxd3] Length = 764 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 157/770 (20%), Positives = 316/770 (41%), Gaps = 49/770 (6%) Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271 R + F + + +I + + +L ++ L + Sbjct: 13 TLRIKRFLMAF---GAYVIWSAICYVGYFLGLTKVPLYILSAGVAGSFIVNILLYLIFRT 69 Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 L+ + I ++ Y + + + L+ Sbjct: 70 GLNKKFQDKSLTLIQMVIATFWIMVVVYYAYEARSAVLLVYMVVLVFGLFRL-------- 121 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--H 389 R + I + F + + K I + +V++ ++ + + + Sbjct: 122 ----RIRQFLFLSIFALVNFSAVIFVLYKLQPGYINVRVDIFNIVVLAFILPWFSVVGGY 177 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + F+ E L DIV+ D+ + +P + + G ++ Sbjct: 178 ITNLRASISRAFTTIE---LLTNNIEDIVFVVDLDLNYTYVSPSVKILRGYEPEAVMKQA 234 Query: 450 RNWLPYIHINDRDNFRTILDSFVG---------YRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + D L V + LQ E ++ D W + Sbjct: 235 LS--DSFAPSSLDLAMRTLSEAVALGKSGGTEYNKSRTLQLE--IKKKDGTTVWTETKFS 290 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + N + +G++ DITE++ + E I A DNLT +PNR F L + + Sbjct: 291 FVRDKNKQTVGILGVSRDITERRLAEEKIRYLATHDNLTELPNRTLFGQMLGRAIKFAQR 350 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK----------FPDILA 610 + V+ ID+D++K IND +G GD +L + R + L+ ++ Sbjct: 351 YQR-QFAVLFIDLDRFKIINDTMGHDAGDQLLKEIASRFRQSLRAVDVVGRLNEKDSVVG 409 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ F +++ N ++A A + + P+ LL E VTASIG + + Sbjct: 410 RLGGDEFVVLIEEVTNLSQVATVAQKILNTAIKPMVLLGEECRVTASIGISVYPDDGEDE 469 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII 728 ++K A++AMY AK G N+ + + ++ ++ +L A+E +ELYL Y + Sbjct: 470 RTLMKKADMAMYFAKEEGKNNFQFYSQNTHSPAFERFFVEAELRHALERNELYLDYQAKL 529 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 I G EAL++W +P G ++ ++F+ +AEE +I I ++++ ++W+ Q Sbjct: 530 DFKTGAITGSEALLRWRNPGLGLVAPTQFLPVAEETGLIVPIGRWVMKTACAQNVAWQRQ 589 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 PP+ + +N++ + L+D++L E ++ + + +P+ ++L +ES+VM P LL Sbjct: 590 GL-PPVTVAVNLSLRQLMDDKLIEDIRTALEASGMAPNLLELEITESIVMHKPAPLIELL 648 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 R++ +G+ + LDDFGT S L+ + ++P DT+K + S + I+ ++I M Sbjct: 649 ARIKSLGVRIALDDFGTGYSSLAQIKHLPVDTLKVDRSFIRNLQQNPDDREIIEAVIAMG 708 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + +IA+ + L CD +Q + + P+ + LL + Sbjct: 709 RALSLNVIAEGVETLAQDTYLREHICDEMQGFYFSKPVAPDQFADLLSKH 758 >gi|89893970|ref|YP_517457.1| hypothetical protein DSY1224 [Desulfitobacterium hafniense Y51] gi|89333418|dbj|BAE83013.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1002 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 136/573 (23%), Positives = 277/573 (48%), Gaps = 10/573 (1%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q + + E Q L + + D +WDWD++RD +++LG + Sbjct: 432 QQFDELLSNQRQLKETQELQELVLEAAIDAIWDWDMIRDIRVYHSKNSSLLGYKGDEIR- 490 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + +W +H +D+ F+ L+ + + R ++R++ D ++ W+ + + + +G Sbjct: 491 SVEHWNALMHPDDKAEFQKKLNQHLFEKTARYSCDYRIKDKDGEYKWIRAFGKALYDQSG 550 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + R +G DIT+ K+ I A+ D LTG+PNR + + + + + + Sbjct: 551 NPYRMVGSHRDITDIKEKEMHIKYLAYHDFLTGLPNRAQIQEIIKSEILKA-EEQGTLLG 609 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ +DID +K IND G GD +L++++R + ++L ++ARL+G+ F I++ Sbjct: 610 VLFLDIDNFKAINDSFGHPTGDQLLITISRHLTQIL-DNHVVARLAGDEFLILIRDIQEK 668 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + D+A + K + + ++ ++ SIG + + +L NA+ AM+ AK Sbjct: 669 EQAIDYAERIMKLFETALVIYKQYCYISTSIGITFYPQDGESYESLLINADTAMHKAKEL 728 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + F + R ++ I+ +L A+E E L Y P + +++GLEALI+W+ Sbjct: 729 GKRNYVVFNMEMKRAVVEKAEIQNNLRKAIEFEEFVLHYQPQVEPHTGKVLGLEALIRWE 788 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 + I ++F+ +AEE +I I +++ + D + + +NI+++ L Sbjct: 789 -KEHKLIPPNKFIGVAEETGLIVPIGDWVVATACAFLKKLHDLGYRE-LTMSVNISARQL 846 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFG 864 ++ E + ++ PS+++L +E++++ + +L RL + I ++LDDFG Sbjct: 847 QEDRFVEKVLKVLRDNDLDPSKLELEITETMLIEFLDAKISNVLARLIENDIKISLDDFG 906 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 S L+Y+ +P T+K + S + T + I I+ MA + ++A+ + Sbjct: 907 LGYSSLNYIKQLPISTLKVDKSFIDDIQSTPESKNITGLIVIMAHQLGLKVVAEGVEKPE 966 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L + CD IQ + PL ++K+L + Sbjct: 967 QREYLIKYDCDAIQGYLASKPLPEEELIKVLNK 999 >gi|163802198|ref|ZP_02196093.1| hypothetical protein 1103602000603_AND4_17439 [Vibrio sp. AND4] gi|159174003|gb|EDP58813.1| hypothetical protein AND4_17439 [Vibrio sp. AND4] Length = 815 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 149/579 (25%), Positives = 271/579 (46%), Gaps = 16/579 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +V ++G T + S S + + D + + I Sbjct: 248 LVGILGMTRNVTRRKMVEAQLSLASK------IFDNSHEGMVITDRKANILDVNGAFTHI 301 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + + G N L H + F L + + G+ + EF R D + + Sbjct: 302 TGYTAEEVIGKNPNILRSGHHD--SQFYKQLWRQLESK-GQWKGEFINRKKDGSIYPQLA 358 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 I + + ++ YI + DI+ +K E + AF D LT +PNR ++ L ++ Sbjct: 359 TISAVMDDKDQLINYICVFEDISVRKTHEEKLQRMAFYDPLTNLPNRTHLINLLEQHIEN 418 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + ++ + +D+D +K IND +G GD +L L R+ ++L +AR+ G+ F Sbjct: 419 GHKNQHI-FATLFLDLDHFKHINDSMGHFCGDQLLTKLGERLQDVLHLRAHVARIGGDEF 477 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSEMLKN 676 ++L + ++ ++ D + P + E + ++ SIG A + S +LKN Sbjct: 478 VVVLPNIDSESQLIDTIEDILSLFNHPFEVSNNESLRISTSIGVARYPQDGQDSETLLKN 537 Query: 677 AELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK G N + V I+ L A+E ++L+LVY P L E Sbjct: 538 ADTAMYLAKKNGRNGYAFYSPDLTDKSVSHVRIQSALHEAIEKNQLHLVYQPQYNLSANE 597 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG+EAL++W HP G IS ++F+ IAE+ +IK I ++LE+ +W D Sbjct: 598 LVGVEALLRWQHPDLGMISPADFIPIAEKTGLIKNIGKWVLEQACLQGRAWLDDGIEFG- 656 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N+++ L + ++ ++ +T + R++L +ES ++ +P+++ L LR++ Sbjct: 657 KLAVNVSALQLQQSNFISKLEGILQETKFPTYRLELEITESFLLIDPQQAIASLNSLREL 716 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 GI ++LDDFGT S LSYL +P + +K + S ++ AI+ +II M K++ Sbjct: 717 GIEISLDDFGTGYSSLSYLKGLPINKLKIDRSFVSDLPGDTDSNAIVNAIIAMGKSLSLK 776 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 +IA+ I E + L C Y Q ++P+ ++ K Sbjct: 777 VIAEGIETEEQAQYLCEHDCVYGQGFLFSAPVRAENLFK 815 Score = 42.6 bits (99), Expect = 0.29, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 54/200 (27%), Gaps = 7/200 (3%) Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 ++ + P W+ + I + +I L I + T + Sbjct: 79 QDQTLSYCPIWLP-SGELFAALVLIHPTAQDAVISGWLSALTGRISFDVSQTYYREQKRH 137 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + + D W T + +A + G Sbjct: 138 DVQLAELLPSLQEFIDCLE---DHTWIKSTDGRYAMTNRSVEESWQMAGSDIVGKND--F 192 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 F + E + + W+ P+ N G+++ + Sbjct: 193 ELFSSRRARKFIDTDQLVIATGSQNTVEECTLIDDNKNPTWLETIKSPIRNRTGELVGIL 252 Query: 514 GIANDITEQKKSLEGILCNA 533 G+ ++T ++K +E L A Sbjct: 253 GMTRNVT-RRKMVEAQLSLA 271 >gi|119773519|ref|YP_926259.1| sensory box protein [Shewanella amazonensis SB2B] gi|119766019|gb|ABL98589.1| sensory box protein [Shewanella amazonensis SB2B] Length = 1491 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 138/559 (24%), Positives = 254/559 (45%), Gaps = 13/559 (2%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + ++ + + A + + V D +ILG + G L H Sbjct: 928 LQNEVDLLAQAFENTSEGVLILDADEQIKVANRAAQSILGAGMAELAGRKFIALLTEHGT 987 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 +R T+L + E +R Q + + + M G + Y+ + +DI Sbjct: 988 NRSEIATLLAN-----GMSWTGERELRIGSGQVCPVWLNVSVMLGLQGKVQHYVVVFSDI 1042 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE+K+S + A D LTG+PNR F RL + + ++ + +M +D+D++K + Sbjct: 1043 TERKRSEADLRRLANYDVLTGLPNRSLFAARLNQAIHKATQNEE-KLALMFLDLDRFKHV 1101 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G +GD +LV R+ + L R G+ F +++ + A + Sbjct: 1102 NDSFGHGMGDALLVEAAARLQSCIDPEYTLCRFGGDEFVVLIHG-AEVDTLNHLANTILG 1160 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 I P L RE ++ SIG + W ++KNA+LAMYHAK G + + + Sbjct: 1161 QIETPFKLFGREFYISTSIGISIWPDDARQPEALIKNADLAMYHAKEEGRGNFQYYSQER 1220 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ DL A+E E L Y P + D +++G+EAL++W HPK G I + Sbjct: 1221 NAEALYHLRLEADLRKALERQEFCLHYQPQVDVNDDNQVIGMEALLRWQHPKDGYIRTDI 1280 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE ++ I+ ++L + D W + P I +NI++ + + ++ Sbjct: 1281 FIKVAEACGLVIDIDKWVLRQACLDGARWSRKLKR-PFKISVNISAVHFRQPDFIDHLRR 1339 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + +T + L +E V+M +R L LR++G+ + +DDFGT S L+YL + Sbjct: 1340 TLEETCIPVENLALEITEGVLMKELHIARDHLRLLREMGVQVAIDDFGTGYSSLAYLRHF 1399 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 + +K + S + + AI+ SII +A+N++ ++A+ + + ++ GC Sbjct: 1400 DVNLLKIDRSFLIDIADNQADQAIVSSIIELARNLKLKVVAEGVETREQLNQVLSRGCHV 1459 Query: 935 IQDSHVASPLGFNSILKLL 953 IQ + A P+ + + L Sbjct: 1460 IQGYYFAKPMARDDMDAYL 1478 Score = 96.9 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ L+L+ + I + V + + + +R ++ GS +W W + Sbjct: 775 LIVILMLLTLAIILIRHRQVERFRHMNTALLESEDRLRQSLRGSDSDLWMWTRKDNAFYM 834 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +L + + + IH +DRD + + + R + E+R + Sbjct: 835 DNR-NGVLSVEQQVLKVNFEEFP--IHPDDRDRVVSHWLAVINGEIERFEAEYRFQRRTG 891 Query: 491 QFHWMIIRIRP--MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP ++ G++ + GI +DIT+ K + A Sbjct: 892 TWGWLRVRGRPSQLNKETGEVEKISGIYSDITQHKLLQNEVDLLA 936 >gi|163748913|ref|ZP_02156165.1| sensory box protein [Shewanella benthica KT99] gi|161331687|gb|EDQ02492.1| sensory box protein [Shewanella benthica KT99] Length = 807 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 146/609 (23%), Positives = 274/609 (44%), Gaps = 18/609 (2%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417 + L P V L I F L + +R A+ S + Sbjct: 197 VNGSLPKWQASPVTVAFSELEAIRNHFINFSDKLKRSEKQ--LEDSQQRWLFAIEVSRNG 254 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 +WDW+ D V + +LG + + + W +H D+ + L+ ++ Sbjct: 255 IWDWNFATDEVFLSDRWKEMLGYSEDELANELSTWEALLHPQDKKDALFSLNQYLNNEVD 314 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + R+R + W++ R + + G R IG D+T + + IL A D Sbjct: 315 EFENVHRLRHKLGHYIWVLDRGMIVEWDEKGKATRMIGTHTDVTSDVINKQVILHQAKHD 374 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LT +PNR S L + L + + + +ID+D +K IND LG GD +L+ + Sbjct: 375 LLTDLPNRSSL---LDALYSLKESKQEVSAGLFLIDLDNFKMINDALGHHYGDRLLIQVA 431 Query: 597 RRIGELLKFPDILARLSGNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLERE 651 R+ ++ RL+ + F ++ + + +I A +R+ I ++ + Sbjct: 432 ARLSSFFATNSLIVRLAADEFVVLAKNLPQDKNSAKRRIHALASQVRQIIGRSFHINNQT 491 Query: 652 ITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIK 708 +V+AS+G S +I +LK A++AM+ K RG + + + I+ Sbjct: 492 FSVSASVGACFIDSQIEIEPELLLKQADVAMHQVKERGRDGYLLYSAEMEEVAQHSLFIQ 551 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 +L A+ +L LVY PI+ +V +EAL++W+HP+ GNI S F+ +AE +I+ Sbjct: 552 SELRGAIAEKQLSLVYQPIVDCR-GLVVCVEALLRWNHPQMGNIPPSTFIPLAEGSGLIE 610 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 + ++L I + ++ + + IN++++ E E + ++ + P+ I Sbjct: 611 ELGEWVLLEACAFINTLQETGVLLDA-VAINVSARQFNQGEFAEDLLKVLHRLGIKPNAI 669 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +E ++ N + + + +LR+ GIS+ +DDFGT S LSYL +P +K + S + Sbjct: 670 ELELTEYALLTNLDVVKQAMDKLRQAGISIAIDDFGTGYSSLSYLQSLPLSRLKLDASFV 729 Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + E AI+++II MA + ++A+ + + + L + GCD Q + PL Sbjct: 730 SKIDVNESSNAIVKAIIDMAHGLNLNVVAEGVETQTQYEFLLQHGCDSFQGYLFSRPLKQ 789 Query: 947 NSILKLLKE 955 I+ ++ Sbjct: 790 ADIVNYIES 798 >gi|219847495|ref|YP_002461928.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Chloroflexus aggregans DSM 9485] gi|219541754|gb|ACL23492.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Chloroflexus aggregans DSM 9485] Length = 699 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 144/565 (25%), Positives = 263/565 (46%), Gaps = 6/565 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q + + S D + D +P ++G A M N Sbjct: 129 QAEQALRQSERLFRAMIERSSDAISIVDRAGRVRYASPSTRHLIGYAVDGMLAVPINGFA 188 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 IH DR+ R + + + + + +FRVR A + W+ + + + I Sbjct: 189 VIHPTDRERVRQLFNKLIQHSGSSVTADFRVRHAKGGWRWIEATASNWLD-DPAVQGVIV 247 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 DITE+K + D+LTG+PNR DRL + S + + + ++ +D+D Sbjct: 248 NYRDITERKLMELRLQHGMLHDSLTGLPNRLLLNDRLLQAIKRSHRNLHYQFALLFLDLD 307 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K IND G +GD +LV++ R+ L+ D ARL G+ F I+L + Sbjct: 308 HFKFINDSFGHPLGDRLLVAIASRLSSCLRTVDTCARLGGDEFVILLDDIASPTDAIRIV 367 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + +++P + R + SIG ++ S+ML++A++AMY AK G Sbjct: 368 ERILRQVSLPFEIDGRLFHTSVSIGIVFGANNYTDPSQMLRDADIAMYQAKMAGKGRYRI 427 Query: 695 FRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + R+ ++ +L AV N E + Y PII L +VG EAL++W HP G + Sbjct: 428 FEPAMREAAQIRLDLEHELRRAVANHEFCVYYQPIIHLPSGRLVGFEALVRWRHPTRGIL 487 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELC 811 + F+ +AEE + +I +LE++ + ++ WR + + +N++++ ++ L Sbjct: 488 LPAAFLHVAEEAGLNDSIGWQVLEQVCQQLVVWRRLNPRAAALSVSVNLSARQVMQPNLY 547 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + L+++ P+ +KL +ES M LL RLR+ GI + +DDFG S LS Sbjct: 548 DRLMQLLAQYQVPPTALKLELTESTFMEYSHDVAALLNRLREQGIQIAIDDFGVGYSSLS 607 Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P D +K + + + K AI+ +I+ +A N+ ++A+ + + + + Sbjct: 608 YLVQLPIDQIKIDRNFIVQLESKQHSQAIVNTIVNLAHNLNLEVVAEGVETQGQLDWIRA 667 Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954 +GC Y Q + PL + ++++ Sbjct: 668 VGCQYGQGYLIGLPLTADEATQMVQ 692 >gi|89902019|ref|YP_524490.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89346756|gb|ABD70959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Rhodoferax ferrireducens T118] Length = 1036 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 139/566 (24%), Positives = 249/566 (43%), Gaps = 18/566 (3%) Query: 402 SDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHI 458 +A + S + + D + I G ++ G R H Sbjct: 469 QAEAELRIAAVAFDSLEGMMMTDASSVILRVNKAFTEITGYSAEEAVGQTPRLIQSGRHG 528 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D +R + D R+G Q E R + + ++ I + +++G + YI +D Sbjct: 529 ED--FYRAMWDDIR--RKGGWQGEVWNRRKSGEVYPQLLSISVVKDADGTVTHYIAAHHD 584 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+E+K + E I AF D LTG+ NR LDR + S+ D + +M ID+D +K Sbjct: 585 ISERKNAEERIKELAFFDQLTGLANRTLLLDRAVQTMAASSRDGSF-GALMFIDLDNFKM 643 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADF 633 +ND LG +GD +L + +R+ ++ D +ARL G+ F + L Sbjct: 644 LNDTLGHDMGDILLKQVAQRLNTCVRDGDTVARLGGDEFVVKLAGLGTVAGEAAVSAETV 703 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + ++ L T SIG + + E++K A+LAMY AK N V Sbjct: 704 ADKILTALNQTYQLGSVAYHSTPSIGVTLFKGQSVAIEELMKQADLAMYRAKAASRNTVR 763 Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + V ++ DL A+E + L Y + D + G E L++W HP+ G Sbjct: 764 FFDPAMESVMMVRAALERDLRQALEEHQFVLHYQAQVAG-DYHLTGAEVLVRWQHPQRGM 822 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + +F+ AEE +I + ++L+ + W + + + +N++++ + Sbjct: 823 VWPDDFIPAAEETGLILPLGHWVLQTACTQLTIWAARPETADLTVAVNVSAQQFRQPDFV 882 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + A+++ T +P R+KL +ES+++ N + + L+ G+ +LDDFGT S LS Sbjct: 883 AQVLAVLAATGANPQRLKLELTESLLVSNVQDLIEKMAALKAKGVGFSLDDFGTGFSSLS 942 Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P D +K + S + + AI ++II +A+++ +IA+ + L + Sbjct: 943 YLKRLPLDQLKIDKSFVRDVLTDPNDAAIAKTIIALAQSLALGVIAEGVETSAQRDFLAQ 1002 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 GC Q + P+ +L Sbjct: 1003 AGCQAYQGYFFSRPVPLEDFEQLCAA 1028 Score = 91.6 bits (226), Expect = 6e-16, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 4/153 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + V ++ + E+ + VW W + P + G Sbjct: 334 RAVRLAATMTRELRESEEKFRAIADCTVNLEVW-WGLDGRPRWINPSVKDYSGYTVQECL 392 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 IH D L + RG EFR D W+ P+ ++ Sbjct: 393 AMPDFAGTLIHPEDMPRVAPELQKGLQGLRGD-DLEFRCVRKDGSVFWLSASWVPIQDAK 451 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF-QDNL 538 G + D+T++K++ + A D+L Sbjct: 452 GVFTGFRTSGRDVTDRKQAEAELRIAAVAFDSL 484 >gi|89094624|ref|ZP_01167561.1| hypothetical protein MED92_00325 [Oceanospirillum sp. MED92] gi|89081094|gb|EAR60329.1| hypothetical protein MED92_00325 [Oceanospirillum sp. MED92] Length = 1217 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 128/563 (22%), Positives = 250/563 (44%), Gaps = 15/563 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIN 459 +R A + + V D+ ++ G + G L H Sbjct: 661 EDRLRQAAAVFGSTNEGVMITDVDGQIQMVNEAFCSLTGYGKDEVIGQPAKILQSGRHSA 720 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + +S G Q E R D + + I + + + + Y+G+ +DI Sbjct: 721 --EFYHEMWESI--NDVGSWQGEIWNRRKDGTTYPEWLSISAVKDDDNRVNHYVGVFSDI 776 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 ++ K+S + + A D LTG+PNR RL L + + +++D+D++K + Sbjct: 777 SQLKESEQKLNHLAHHDMLTGLPNRLMLQTRLDQALAQARRKNTSLAL-LLLDLDRFKDV 835 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G + GD++L + + E L+ D++ R+ G+ F I+L + A + Sbjct: 836 NDSFGHSAGDELLKQVASILKEGLREVDLVCRMGGDEFAILLEDIQHPEDAGKVASKVTS 895 Query: 640 SIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 +A N+ E+ + S+G + + S +L++A+ A+Y AK G F Sbjct: 896 LLAKSWNISNGYEVAIGGSVGISLFPEQSGDSQALLQHADAALYRAKSEGRGRFHYFTEE 955 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ L + +EL + Y P I + ++VG EAL++W+ P+ G I +E Sbjct: 956 LTRDARKRLDLEARLIKGIARNELEVYYQPQIHIATGKLVGAEALVRWNDPEHGLIGPNE 1015 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I I L +L++ + +W D P + +N+++ L +++ + Sbjct: 1016 FIPLAEQTGLINDIGLLVLKQGCSQLKAWLDA-GCEPFALAVNLSAVQLRHSDIRPVIAN 1074 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T ++L +ES +M + S LL LR +G+ + +DDFGT S L+YL Sbjct: 1075 VLEETGLEAKYLELEITESALMEREQESIQLLDSLRSLGVRIAIDDFGTGYSSLAYLKKF 1134 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + + + I +I+ M ++ ++A+ + E + L C Y Sbjct: 1135 PLDVLKIDKSFVDDIPADKDDMVIAATIVAMGHSLGLQVLAEGVETEEQLAFLRSKNCHY 1194 Query: 935 IQDSHVASPLGFNSILKLLKERF 957 Q + P+ + L Sbjct: 1195 YQGYLRSKPVPADQFANFLTYHN 1217 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 45/339 (13%), Positives = 95/339 (28%), Gaps = 55/339 (16%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ + S+ + E + S D W D + A + G + Sbjct: 526 LAILEDITEQRLASEALKESAETYFSIITTSQDGFWIVDQQARFLDVNEAYAKMSGYSRE 585 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + L I D ++ R + R + + + + S Sbjct: 586 ELMSMSIGDLDAIETPDVTK--KRIELIKHQGGQRFLTKHR--RKNGDIYDVEVNATYWS 641 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G R+ D+TE+ DRL +A + Sbjct: 642 GGGG---RFFVFLRDVTERINY----------------------EDRLRQA---AAVFGS 673 Query: 564 LRPTVMVIDIDK-YKKINDVL----GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 VM+ D+D + +N+ G D+V+ + + R S + Sbjct: 674 TNEGVMITDVDGQIQMVNEAFCSLTGYGK-DEVIGQPAKILQS--------GRHSAEFYH 724 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 + S N+ RK SI + + ++ Sbjct: 725 EMWESINDVGSWQGEIWNRRK--------DGTTYPEWLSISAVK-DDDNRVNHYVGVFSD 775 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717 ++ + NH+ + + +R+M++ L A+ Sbjct: 776 ISQLKESEQKLNHLAHHDMLTGLPNRLMLQTRLDQALAQ 814 Score = 61.9 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 13/158 (8%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + +Q + + +R + S + + ++ + G Sbjct: 398 VAIARDLTERMESTQKLIENEQRFRMLFDESPISMAYVSFSGEVLSLNKRFTEVFGYTKD 457 Query: 444 SMHGPIRNWLPYIHI--NDRDNFR----TILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 + +W H RD R LD E++V + + Sbjct: 458 D-VPTLEDWFIKAHPQQEYRDQVRTRWGHSLDGAKSGNHTIPAAEYQVICKQGKTKLI-- 514 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 ++ +G ++ I DITEQ+ + E + +A Sbjct: 515 TASGVTTEHG----FLAILEDITEQRLASEALKESAET 548 Score = 43.0 bits (100), Expect = 0.25, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 7/173 (4%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 + L I +L G + + + +L + + I E V D Sbjct: 247 VLAGILTRHDIAKSLQGSYIEYLQETLDRKNRDLLDSESRLREIEQR-EFYQDLVDQVSD 305 Query: 417 IVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 ++ D + A L + + N F + L Sbjct: 306 SIFVIDAEDSRILDANQKAADNLRMPLAELLNLRVVDFSVAVPNLEYWFDSFLPKLREGE 365 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + R AD + ++ R + G+ + IA D+TE+ +S + Sbjct: 366 VLTISDH---RRADGSVFPVEVKARLV--QLGNREYVVAIARDLTERMESTQK 413 >gi|312962062|ref|ZP_07776559.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] gi|311283872|gb|EFQ62456.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] Length = 1092 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 147/586 (25%), Positives = 272/586 (46%), Gaps = 26/586 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 T ++ + + + E+ + A S D + + R V + G + Sbjct: 516 VTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAISITERETGRYVEVNDGFCRLTGYRA 575 Query: 443 GSMHG----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G I W +N R+ L + + + E + + Sbjct: 576 EEAIGLTLYQIGIWAD-------ENQRSALLAELQIKSRIHHMEMIWHNKRGDLLAVEVS 628 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + P++ + + A D++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 629 VEPITL--NETPCLLLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 686 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F Sbjct: 687 KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFV 745 Query: 619 IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++L + S ++ +R+ ++ P+ L + + VT SIG A T +++ Sbjct: 746 VLLSGLDGSRTQVSKQVQALTDTLRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPADL 805 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 LK A++A+Y AK G N + F S R+ +R+ ++ DL LA+ E + Y P + Sbjct: 806 LKRADIALYRAKDSGRNTTQMFHNSMQRTASERLRMETDLRLALSRGEFSVHYQPQVDAR 865 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 +I+G EAL++W HP+ G S SEF+ + E+ +I + ++L+ + + Sbjct: 866 GNKIIGAEALVRWHHPELGAQSPSEFIKVLEDSGLILEVGTWILDEACAAFEQLIKEGKV 925 Query: 792 PPIFIL--INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P+ +NI+ + N+ E ++ +++ S +KL +E +V+ N + + + Sbjct: 926 DPLNFSLCVNISPRQFRQNDFVEKVEHSLNQHSLPYSLLKLEITEGIVIQNLDDTISKMR 985 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 RL+K+G+S +DDFGT S L+YL +P D +K + S + + I+R+I+ MA+ Sbjct: 986 RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDATHDPNDAEIIRAIVAMAR 1045 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ +IA+ + + L ++GC Q + PL +LL Sbjct: 1046 SLNLEVIAEGVETLEQLAFLQQLGCHLFQGYLHSRPLPIEGFRRLL 1091 Score = 115 bits (287), Expect = 6e-23, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 11/169 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + Q + ER LA+ + WDW I + + A + GL Sbjct: 262 ISTFLDTTERKNAEQALKDSQERLDLALDSAQLGTWDWHIPTGMLYGSARAAQLHGLPPE 321 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 H + + +RDN R+ + G Q +RV D ++ R R Sbjct: 322 PFHESFDAFFEGMPDEERDNMRSAYRTLREGPAGNYQLTYRVPMEDGTSRYLESRARLYR 381 Query: 504 NSNGDILRYIGIANDITEQKKSLEG---------ILCNAFQDN--LTGI 541 + G LR G DIT+Q + + L A D +TG+ Sbjct: 382 DERGAPLRMAGTLLDITDQVEREQRLSASEEKFASLFQASPDPICVTGL 430 Score = 84.6 bits (208), Expect = 8e-14, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 13/156 (8%) Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W W+I +++ + + G +L + DR + + Sbjct: 44 WYWEIDSGKISWSRGTQALFGFDPRQPLPKDLEYLDLLAPEDRARVIRAFHAVLAGEPFE 103 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK------SLEGILCN 532 R+R D HW+ I + + G R IG+ +IT Q++ E Sbjct: 104 QAMHHRIRWPDGSQHWLEINGSLLPDKAGR-RRMIGVIREITHQREREAALSHSEKRFAT 162 Query: 533 AFQDNLTGI-PNRQSFLDRLTTILDLSATDDNLRPT 567 F + PN + ++ + + Sbjct: 163 LFH-----LCPNMVLLTRQSDGLISEANQYFEMLFG 193 Score = 47.6 bits (112), Expect = 0.011, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 12/159 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLAS 442 + + Q + + E+ + S D + + V P G + Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQASPDPICVTGLDSGAFVEINPAFTQTFGWTA 450 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + + +D + ++ + + V + Q +I R + Sbjct: 451 AEVIDKSADQIGLW--DDSNQRVQRIERVIRDQALS-NVAVVVHHKNGQSLTCVISSRLI 507 Query: 503 SNSNGDILRYIGIANDITEQKK------SLEGILCNAFQ 535 GD + DIT+Q++ + E AF Sbjct: 508 K--VGDQPCIVTTLRDITQQQRSEAALKASEEKFAKAFH 544 Score = 44.6 bits (104), Expect = 0.082, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 21/177 (11%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442 VI+ + + +R + ++V ++ + G Sbjct: 137 IGVIREITHQREREAALSHSEKRFATLFHLCPNMVLLTRQSDGLISEANQYFEMLFGWPV 196 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G L H R L + + E + A++ Q H + + + Sbjct: 197 ADAIGRTTLDLGLWH---HPEQRMQLVKATQRKGEPITMEVQFCASNGQIHDGTLSAQKV 253 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 G+ I D TE+K + A +D+ +RL LD + Sbjct: 254 ELE-GE-AYLISTFLDTTERKNAE-----QALKDS----------QERLDLALDSAQ 293 >gi|134103559|ref|YP_001109220.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea NRRL 2338] gi|291008080|ref|ZP_06566053.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea NRRL 2338] gi|133916182|emb|CAM06295.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Saccharopolyspora erythraea NRRL 2338] Length = 687 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 145/635 (22%), Positives = 282/635 (44%), Gaps = 23/635 (3%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT----------VIQHVL 391 A + I L + + A + G V + + Sbjct: 56 LARTVDLIGANLLRTLKLGPGPDWDCRIAALQGAVCSGFVQAVRKRTLDEQEAIRQAVLD 115 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A Q + + R + + D+ + + ILG + + G + N Sbjct: 116 ARDSVEQALRTSEARFRAIFTEAAIGIGIADMSGRILEVNASLRRILGRPAEKLRGSMVN 175 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 +IH D + + V R + + E + D W + + + +G L Sbjct: 176 --DWIHPADNAGIWRLYEEMVRGERDQYRVEKKFSRPDGGTVWTEMIVSLVRGEDGLPLY 233 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + D+T+++ E + A D LTG+PNR FL++L L+ R + + Sbjct: 234 QVAMIEDVTDRRLLQERLRHQAMHDPLTGLPNRALFLEKLGVALEN--HGPGERVALCYM 291 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKI 630 D+D +K IND LG VGDD+L++++ R+ ++AR+ G+ F I++ + + Sbjct: 292 DLDGFKVINDSLGHHVGDDLLIAVSERLALSARGENRLVARMGGDEFVILVQDSPGTEQA 351 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + A + ++ P+ + E++V+ASIG T++E++++A++ +Y AK G Sbjct: 352 IEVADRVLDALVEPVRIGGHELSVSASIGIVERPVRGQTAAELMRDADVTLYWAKAEGKG 411 Query: 691 HVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F ++ + + + A+++ E Y+ Y P+I L D +VG+EAL++W HP+ Sbjct: 412 QWALFDPDRNATEVAQFRLSAKMPAALDSEEFYVEYQPLIGLRDFGVVGVEALVRWWHPE 471 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + F+ +AEE +I + ++L + R W+D+ F+ +N+A + D Sbjct: 472 LGRLGPDRFIGLAEETGLIVPLGRWVLRQACRQARQWQDEFGDAAPFVSVNLAVRQSRDP 531 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 L + + A++ +T PSR++L +ES +MG + L L ++G+ + +DDFGT S Sbjct: 532 NLVDDVAAILRETGLEPSRLQLELTESAIMGTADEPLDALRALSRMGVRIAIDDFGTGYS 591 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS------TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 L+YL ++P +K GS M G I+ +++ +A + T+ A+ + Sbjct: 592 NLAYLRHLPVHELKIAGSFMEGLRDAERADPVDARIVGTLVDLAHALGLTVTAEGVETHA 651 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + + +GC+ Q A P I ++ + Sbjct: 652 QARRVADIGCETGQGYFFARPCSPERINAIIADHL 686 >gi|224823444|ref|ZP_03696553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] gi|224603899|gb|EEG10073.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] Length = 1054 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 139/551 (25%), Positives = 254/551 (46%), Gaps = 14/551 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTI 467 S + D V I G ++ G + L Sbjct: 505 IFDTSSQAIVISDASNHIVMVNRAFTDITGYSAQEAIGRQPSLLSSGRQPPAFYQKMWQQ 564 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L RG E R D + + I + + G + ++ + +DI+E+K+ Sbjct: 565 LAQ-----RGHWAGEIWNRRKDGTIYPEWLSISLLRDEAGQVSHHVALFSDISERKEQEA 619 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A D LT +PNR DRL + +A N R V+ +D+D +K IND LG A Sbjct: 620 HIRHMAEHDFLTDLPNRALIHDRLAQAIRAAARQKN-RLAVLFLDLDHFKNINDTLGHAH 678 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD++L + +R+ ++ D + R G+ F +I+ + + A A + + P + Sbjct: 679 GDELLKQVAQRLQHTVRGSDTVGRNGGDEFVLIVPELASPAEAAQLAQRLLDDLRRPFQI 738 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705 + + ++ SIG + + + E+L +A+LAMYHAK +G N + F ++ ++R+ Sbjct: 739 DGQALAISTSIGISLFPDNGSELQELLVSADLAMYHAKAQGRNRYQFFTPELNAQVAERL 798 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ L A+E +LYLVY P + + +VG EAL++W HP+ G IS + F+ +AEE Sbjct: 799 TLENHLRQALERQQLYLVYQPQFAIDNRRLVGCEALLRWQHPEQGLISPARFIPLAEETG 858 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++L+ R +W P+ + +N++++ L +L ++A +++ Sbjct: 859 LIVEIGRWVLDEACRQAAAWLAAG--TPLRVAVNVSARQLGQPDLLAEVEAALARHRLPS 916 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++L +ES +M + E++ L ++ GI L +DDFGT S L+YL D +K + Sbjct: 917 CWLELEVTESTLMEDAEQAVRHLQAFKERGIHLAVDDFGTGYSSLTYLKRFSPDLIKIDR 976 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + + AI+ +I+ +A+ + +A+ + E + L + GCD +Q P Sbjct: 977 AFVMNLPDNRDDAAIVSAIVQLAEALGMQTLAEGVESEEQLDFLAQAGCDVVQGYLTGRP 1036 Query: 944 LGFNSILKLLK 954 + L Sbjct: 1037 QSAGELTAQLA 1047 >gi|254784772|ref|YP_003072200.1| signal transduction protein, with PAS, HAMP, GGDEF and EAL domainsl [Teredinibacter turnerae T7901] gi|237686658|gb|ACR13922.1| Predicted signal transduction protein, with PAS, HAMP, GGDEF and EAL domainsl [Teredinibacter turnerae T7901] Length = 807 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 142/664 (21%), Positives = 291/664 (43%), Gaps = 20/664 (3%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 L + V + R ++ + + + G L+P L Sbjct: 147 FGLVEIYSNNHGVNQAFLRFSITLAFALTIALFVAYFVGGRLVGSSLVPLRDLFNTSQEV 206 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413 N + + Q + + + R + Sbjct: 207 AASPYANIRANKK--------SNDEIGDLVDVFNQILDTLETDNAALMESESRFRVLAEH 258 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 + ++ + T I GL + + I D + ++ D Sbjct: 259 APIGIFLRNRKLIMEYTNDRWCEITGLTPSQAN----AFTNNIDPKDAALYESVQDKARS 314 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 ++ E+ ++ + P++N G ++G D+TE K + + A Sbjct: 315 QHTPQV-IEYTYTTPQGSRRTLMEHLAPLNNLQG-FQGFVGSLLDVTELKTAQMELEKLA 372 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 F D LT +PNR+ F L + + D R VM+ D+D +KKIND G GD +L+ Sbjct: 373 FYDPLTDLPNRRFFRGHLELTIAAAKKYDK-RLAVMMTDLDDFKKINDTFGHDAGDQLLM 431 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + +R+ D+++R+ G+ F +++ + ++S ++ A + +++ + + +++ Sbjct: 432 QIGKRLKAASASIDVVSRMGGDEFMLLVKNIDSSSQLDHKANNILRALREKMEINGQQVE 491 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDL 711 V SIG A + + IT E+++ A++A+Y+AK GGN V + D++ +++ L Sbjct: 492 VGGSIGIAVFPNDAITYEELIRYADIALYNAKSMGGNTVSYYSSDLDKRIKDKMRLEQKL 551 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 +A++ L + PI E++ EAL++W P+ G IS F+ +AEE +I + Sbjct: 552 RVALDKRLLEVYIQPIYDAATREMIKGEALVRWMDPEEGFISPEVFVSLAEESGLIYDLG 611 Query: 772 LFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 +LE++ + + ++ + I +N++++ ++L ++A + P +I+ Sbjct: 612 SLVLEKVCAYLHEHEGKLHLLGMRTIAVNLSARQFFASQLVTYIEATFKQYQIDPKQIEF 671 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ES+VM + +++ ++ +R +G SL++DDFGT S LSYL P +T+K + S + Sbjct: 672 ELTESMVMDDVDQAIDIMRAIRNLGCSLSIDDFGTGYSSLSYLKQFPINTLKIDRSFIKD 731 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + + I +II MA N+ T++A+ + + + L CDY+Q + A P+ + Sbjct: 732 IPEDKNDVEIAYTIIAMAHNLGLTVVAEGVETKEQWQLLRDKNCDYLQGYYFARPMPMSD 791 Query: 949 ILKL 952 +L L Sbjct: 792 VLML 795 >gi|296386776|ref|ZP_06876275.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas aeruginosa PAb1] Length = 760 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 143/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%) Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + D RQ+ AV + + V D V P I G S + G L Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D+ ++ + + E R + + + IR + N G + Y+G+ Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRAVRNDQGQLTHYVGVF 314 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +D++ K+S + A D+LTG+PNR +R+ L+ D + +++ID+D + Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD +L +++R+ L +L+RL G+ F I++ ++ + +A + Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P ++ + I ++AS+G + + ++++A+ A++ AK G N + Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ V ++ L A+++ EL + Y P+ L IVG+E+L++W HP+ G + Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE +I A++ ++L+R R + W+ + FI +N++S+ L E + Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FIAVNVSSRLFNRGGLEERI 611 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ P ++L +ES VM + E+S LL RLR +G++L +DDFGT S L L Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P +K + + G AI R+I+ +A+++ ++A+ I + L GC Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731 Query: 933 DYIQDSHVASPLGFNSIL 950 D+ Q P ++ Sbjct: 732 DFGQGYWYGRPQPAEALR 749 Score = 140 bits (353), Expect = 1e-30, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + AW + + + +L + L +L+ +++ Sbjct: 17 IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + +R + A+ D +WDWD+V DR+ +P A ++GLA + PI W +H Sbjct: 76 LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + L + +R+R D + W+ R R + ++ G L Y G+A DI Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195 Query: 520 TEQKKSLEGILCNA 533 T Q+ + + A Sbjct: 196 TLQRLKEDHLRQAA 209 >gi|30023334|ref|NP_834965.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|218231224|ref|YP_002370076.1| sensory box/GGDEF family protein [Bacillus cereus B4264] gi|229050972|ref|ZP_04194521.1| Sensory box/GGDEF [Bacillus cereus AH676] gi|229153464|ref|ZP_04281642.1| Sensory box/GGDEF [Bacillus cereus m1550] gi|29898895|gb|AAP12166.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|218159181|gb|ACK59173.1| sensory box/GGDEF family protein [Bacillus cereus B4264] gi|228630068|gb|EEK86719.1| Sensory box/GGDEF [Bacillus cereus m1550] gi|228722349|gb|EEL73745.1| Sensory box/GGDEF [Bacillus cereus AH676] Length = 909 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 52 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L+ + Q L T Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|146284299|ref|YP_001174452.1| sensory box protein [Pseudomonas stutzeri A1501] gi|145572504|gb|ABP81610.1| sensory box protein [Pseudomonas stutzeri A1501] Length = 642 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 153/620 (24%), Positives = 277/620 (44%), Gaps = 16/620 (2%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQ-PALVGGLVLIVILIGFTVIQHVLATGYFS 397 A + I + L ++ + AL L ++ + + Sbjct: 12 YFCLAMLWILLGDTLLGQLVSGDGQAWQMGKGALFVTLTSALLFVLGRRHVRRFDEQQRA 71 Query: 398 QGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 Q + ++ + + + V D + V P + I G ++ + G + + Sbjct: 72 QHLQETSLKQAAAVFDSTQEGVLVTDPQQHIVHVNPAFSRITGYSTEEVLGQTPKLFASG 131 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D +R + + G E R + + + +R + ++ G + Y+ + Sbjct: 132 KH--DATFYRQMWQAL--QEDGVWSGEIWNRRKNGEVYPQWQNLRCIYDNEGQLSHYVAV 187 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D++ K+S E + A D L +PNR F +R L+ + + +++ID+D Sbjct: 188 FSDLSALKRSREELDQLAHFDPLVNLPNRLLFTERAKQDLERARANKR-SGALLLIDLDH 246 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IN+ LG +GD +L +++ R+ E L+ L RL G+ F ++ + K A+ Sbjct: 247 FKDINESLGHNLGDTLLQAVSARLSEQLESGMTLGRLGGDEFALLCEDYG-AEKATALAL 305 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + + P L ERE+ +ASIG + + ++++NA+ A++ AK G + Sbjct: 306 RILDRLNEPFRLGERELFSSASIGIVLYPYPTDVQNVEQLMRNADSALFKAKSSGRSTYA 365 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + S RV + L A+E +L L Y PI L I G EAL++W HP+ G Sbjct: 366 FYSQELTSQARQRVELVTALRQALEQGQLRLHYQPIYDLRQGSISGFEALVRWQHPEKGL 425 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS + F+ IAEE +I AI+ ++L++ W Q P FI +NI+S+ + +L Sbjct: 426 ISPAVFIPIAEETGLISAIDHWVLQQACHQAREWLGQ-GRPLGFIAVNISSRLFGNGDLD 484 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + +++ + + ++L +ES VM +P+ + LL RLR +G+ L +DDFGT S L Sbjct: 485 LQIATVLASSGLAARHLELEITESAVMQDPDGALELLQRLRTLGVQLAIDDFGTGYSSLQ 544 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 L + +K + + G + AI RS+I +A N+ ++A+ I L Sbjct: 545 RLKRMNVHKLKIDQGFVRGLPADREDAAITRSVIGLAHNLGLKVVAEGIEIADQAAFLLE 604 Query: 930 MGCDYIQDSHVASPLGFNSI 949 CDY Q A P + I Sbjct: 605 QNCDYGQGYGFARPRPADEI 624 >gi|144899370|emb|CAM76234.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 806 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 149/587 (25%), Positives = 259/587 (44%), Gaps = 12/587 (2%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPD 433 LV +V L + Q D R + + + + V P Sbjct: 215 LVWLVGLAALVFVTRRTLARLEEQARVEDENRLAEHVFANALEALVVTTGDGTIVRINPA 274 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 + G + G N L H +D D + + S + G Q E + R D Sbjct: 275 FTRLTGYQPDEVIGHKANVLRSYHHDD-DFYAQMWQSLLS--TGSWQGELKNRRKDGSIF 331 Query: 494 WMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 I + Y+ DIT Q +S + I A D LT +PNR F DRL Sbjct: 332 VARENIAALMEPGRDRPRYYVASFTDITAQVESQQHIEHLAHYDPLTDLPNRALFRDRLG 391 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 + L+ + + V+ +D+D +KK+ND +G GD +LV + RR+ + D + RL Sbjct: 392 HAVTLANR-ERRKIAVLFLDLDGFKKVNDTIGHRAGDSLLVEVARRLKACTRSSDTICRL 450 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F ++L + + A + S+A P L RE+ V +SIG + + Sbjct: 451 GGDEFALVLERLDEINDVVPVADKILTSLAAPFVLEGREVYVGSSIGISLHPIDGNDAET 510 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRL 730 +LK+A+ AMY AK G + + + + L A+++ ++ Y P ++L Sbjct: 511 LLKHADTAMYQAKAEGKGRYKFYAADMTLRQERRLDMEGALRGAIDSRAFHVYYQPKLQL 570 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 +I G EAL++WDHP G I +F+ +AEEL +I I+L +LE+ + + Sbjct: 571 RGGDIAGFEALVRWDHPSLGLIPPMDFIPLAEELGLITQIDLLVLEQACTMGVQCLARGY 630 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 P+ + +N++S DL + +L + ++++T + + L +ES M +L + Sbjct: 631 --PVTMAVNLSSLDLKNPDLPTLVAGILAQTGLPANMLVLEITESFAMEAGLGQTSILEQ 688 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKN 908 L +G+SL +DDFGT S LSYL +P ++VK + S + ++ +I+ +A + Sbjct: 689 LTALGVSLAIDDFGTGYSSLSYLKALPVNSVKIDRSFVRDIGTDSRDTMLVSTIVGLAHS 748 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++A+ + L CD Q VA P+ + + L + Sbjct: 749 LNLRVVAEGVEDHGQKDLLHHHHCDEAQGYLVARPMPADQVFAFLDQ 795 >gi|189426376|ref|YP_001953553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189422635|gb|ACD97033.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 693 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 152/575 (26%), Positives = 267/575 (46%), Gaps = 10/575 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + Q + ER + V D+V DI +P + G+ Sbjct: 104 LITLHDISRHKRAEQALRLSEERYRMLVEHQSDLVVRVDIEGRLQFASPSFCMLFGIDEE 163 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G R P I+ + + + + + + E + D W+ ++ + Sbjct: 164 QLVG--RELCPIINSSGQAVMKEAMQRLDCHPKSCYH-EICSQTLDG-LRWIGWAMKGVV 219 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G I +GI DIT++KK+ + IL A D LTG+PNR DRL+ L L+ N Sbjct: 220 DEKGHIEAIVGIGRDITDRKKAEQEILQLAHYDTLTGLPNRSLLQDRLSQALSLANR-GN 278 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + V+ +D+D++K +ND G +GD +L ++RR+ + ++ D ++R+ G+ F IIL + Sbjct: 279 VTLAVLFLDLDRFKHVNDAFGHQIGDLLLQEVSRRLKDCVRATDTVSRIGGDEFVIILTN 338 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + A + S++ L E+ SIG A + + +LK+A++AMY Sbjct: 339 LIKCSQAGSIAAKIISSMSRLFQLGGHELYSGTSIGIALYPTDGNDVDTLLKHADMAMYQ 398 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + F R+ +++ L A+E+ EL L Y P I I GLEAL Sbjct: 399 AKASGRGTFKFFSPEHNEKMLQRMQLEQALRRAIEHQELSLDYQPQIDSATGSINGLEAL 458 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G + F+ IAEE +I + ++L R +W+ + I +NI+ Sbjct: 459 LRWQHPQLGLLLPGLFITIAEETGLIIPLGEWVLRTACRQARAWQRA-GYHRLRIAVNIS 517 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L + A++ +T P ++L +E+ +M +P+ + LL L++ GISL +D Sbjct: 518 PRQFQQRGLIPMIDAILQETGCDPRGLELELTETTLMDSPKEATALLKALKRRGISLAID 577 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LS+L + P D +K + S + + + AI+ +II MA + ++A+ + Sbjct: 578 DFGTGYSSLSHLKHFPIDRLKIDRSFVNDLTRSREDSAIVEAIIAMAHRLGLEVVAEGVE 637 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 L+ GC Q + + LL Sbjct: 638 HPDQHAILSDWGCKTCQGFLYSKAVSTEEATALLA 672 >gi|319650032|ref|ZP_08004181.1| hypothetical protein HMPREF1013_00786 [Bacillus sp. 2_A_57_CT2] gi|317398213|gb|EFV78902.1| hypothetical protein HMPREF1013_00786 [Bacillus sp. 2_A_57_CT2] Length = 973 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 151/566 (26%), Positives = 263/566 (46%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + + D V+ D+ + + P G + G L Sbjct: 410 ALNSSLKMSEQYYKSLFDNNADFVYSTDLKGNFTSINPAFEKTFGFMQDEIIGKTA--LS 467 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 Y+ D R + + + + + ++ P++ NG+ + G Sbjct: 468 YVCDADVPRVRMHFYRALRGKEQYYN--VYINTKSGETNLFQLKNIPIT-VNGECVGIYG 524 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +ITEQKK E I AF D TG+PNR F ++L L + + V+ IDID Sbjct: 525 IGRNITEQKKIEEKITELAFFDRDTGLPNRMKFTEQLEMQLKRARKKQK-KIAVLSIDID 583 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG GD VL ++ RI +L L R SG++F ++L E K+ + + Sbjct: 584 RFKIINDSLGHFAGDMVLKEISERIERVLPSGSYLGRFSGDKFTLVLSREATIEKVMNVS 643 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + I+ PI+ +E VTASIG + +LKNA++A +K +GGN V Sbjct: 644 KKILDEISHPISQSNQEFIVTASIGASLHPDDGADEHLLLKNADIATNRSKQQGGNRVTF 703 Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + R+ ++ L A+ +E +L Y P+I L + G EALI+W+HPK G + Sbjct: 704 FSMEMNQQAMVRLELESYLRKALLKNEFFLCYQPLIDLDTGNLYGSEALIRWNHPKLGLV 763 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S EF+ +AEE +IK I ++L + W+ + I +N+++ + Sbjct: 764 SPGEFIPLAEETGLIKDIGGWVLRSACKQNKRWQ-MLGYKSLSISVNVSAYQFQQPGFLQ 822 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ + + P + L +ES ++ N E S ++ L+ IG+ +++DDFGT S LSY Sbjct: 823 EVKMALELSGMEPQYLTLELTESTMLRNVEHSIQVMQSLQNIGVKVSIDDFGTGYSSLSY 882 Query: 873 LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P +T+K + S + +AI+++II M + ++A+ + + I+ L + Sbjct: 883 LKDLPINTLKIDRSFINNLRLNTSDVAIVKAIITMGHGLAVKVVAEGVETQEQIELLKEL 942 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 C Y Q ++ PL + + L + Sbjct: 943 KCHYAQGFYIHKPLMTSEFEEGLSKY 968 >gi|89092665|ref|ZP_01165618.1| regulatory component of sensory transduction system [Oceanospirillum sp. MED92] gi|89083177|gb|EAR62396.1| regulatory component of sensory transduction system [Oceanospirillum sp. MED92] Length = 885 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 148/565 (26%), Positives = 269/565 (47%), Gaps = 16/565 (2%) Query: 401 FSDGER---QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--Y 455 ER S AV S V ++ + ++ G + + G + L Sbjct: 325 RKAEERILTLSQAVEQSPVSVVITNLKGEVEYVNSTFESVTGYSQAEVLGKDSSILKSGK 384 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + + V Q EF+ + + + W I P+ ++ G++ ++ + Sbjct: 385 TPP---GRYADMWAKLVQGE--SWQGEFQNKKKNGEIFWEQAHIAPVLDAEGEVRHFLAV 439 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D+T+QK E IL A D LT +PNR + RL T++ + + + + V+ +D+D Sbjct: 440 KQDVTKQKAQEEKILHQAHFDGLTELPNRFLAMHRLETMMHEAKRNQH-QIAVLFLDMDD 498 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +KK+ND LG +GD +LV +R+ ++ D + RL G+ F +++ + A Sbjct: 499 FKKVNDTLGHDMGDKILVEAAKRLQGSVRDSDTIGRLGGDEFIVLINHLERPEQALPIAQ 558 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + + + R+I +T SIG A + T SE+L+NA+ AMYH+K G N + Sbjct: 559 NLLQQFRSSLTIDGRDILLTMSIGIALYPGDGTTPSELLRNADSAMYHSKAAGRNSFHFY 618 Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + R+ ++E L A++ +EL L+Y P++ L +IVG EAL++WD + G IS Sbjct: 619 TQEMNIEANRRLQLEEQLHNALDRNELRLLYQPVVDLKTRKIVGAEALLRWDSKELGAIS 678 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ +AE +I I F+L+ R W P I IN++ + D L + Sbjct: 679 PEEFIPVAEHTGLIVEIGKFVLDDALRTTSRWIKTFI-PDFHIAINLSPRQFRDPHLIDN 737 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +++ ++ ++L +E V+M + +L + GIS+++DDFGT S LSYL Sbjct: 738 IESFVNSYGLEGRNLELEITEGVLMSQHADVEEAIAKLTQKGISISMDDFGTGYSSLSYL 797 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PF+ +K + S + + + ++ + I MA + +IA+ + E L R Sbjct: 798 RSYPFNILKVDRSFINDISVDAADLELVNASIDMAHGLGLKVIAEGVETEEQTALLLRKN 857 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 CD Q + + P+ + + ++LK++ Sbjct: 858 CDMAQGYYFSKPIPADELEEILKKQ 882 Score = 71.5 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 45/332 (13%), Positives = 106/332 (31%), Gaps = 28/332 (8%) Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA 280 + + + Y S+ + + L G I +A+ + + RW Sbjct: 13 VALLLAMGIVYDSLGLQNIHQRF-LREGITGILVGLLGMAVMLTPWELIPGVFFDARW-- 69 Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340 + + I L + + + +I G + Y Sbjct: 70 VLISLCGLYFGVIPTLIAVVMTVTLRLYQGGAGIYVGSAVIICSALIGLGWRAYIEKHNK 129 Query: 341 IPAWILIFIWFIGLWMAIT---------------KRLDNDIIQPALVGGLVLIVILIGFT 385 W ++ + + + + + I+ +G ++L +IL Sbjct: 130 ALTWWRLYFLGLSVQITVLCLMFFMPEHLRYKIIAAIAPTILIFYPIGTMLLGMILSRQE 189 Query: 386 VIQHVLATGYFSQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + S+ I + ER + D ++ D + + G Sbjct: 190 ERRLAERELHISRQILNR-ERGLLRGLIDALPDHIFIKDKEGKYLGCNKAFQSFTGHQEA 248 Query: 444 SMHGPIR-NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G ++ H I D+ + ++++ + R +E D + ++ P Sbjct: 249 DLIGKTDQDFSESNHAITDKSDTLQVINNLLPINREAWTHE-----QDGSPILLESQLAP 303 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + +G+ +GI+ DITE++K+ E IL + Sbjct: 304 FLDMDGEPQGIVGISRDITEKRKAEERILTLS 335 >gi|228942448|ref|ZP_04104985.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975380|ref|ZP_04135936.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982017|ref|ZP_04142310.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228777681|gb|EEM25955.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228784362|gb|EEM32385.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817190|gb|EEM63278.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 885 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 28 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 84 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 85 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 138 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 139 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 198 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 199 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 258 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L+ + Q L T Sbjct: 259 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 318 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 319 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 376 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 377 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 433 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 434 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKK-PFAVMFL 492 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 493 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 552 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 553 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 612 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 613 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 672 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 673 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 731 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 732 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 791 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 792 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 851 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 852 QKHKCKYMQGYYFSKPLTSNQFIKFLQK 879 >gi|170727840|ref|YP_001761866.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908] gi|169813187|gb|ACA87771.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella woodyi ATCC 51908] Length = 1012 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 139/556 (25%), Positives = 242/556 (43%), Gaps = 12/556 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + S + + D + +T I G + + L + Sbjct: 449 ESLNLAASVYNNSSEAMSVQDKEGNIITINSAFTEITGYREDEIINQHISILQC---DSS 505 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + GR E ++ H + + I + ++ G++ R + + +DITE Sbjct: 506 SKKTFVQMRSTIEETGRWNGEIWLKHKRGSEHIVRLTINTILDNRGEVYRRVALFSDITE 565 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K++ I A D LT +PNR+ L+ L T L S +M +D+D +K++ND Sbjct: 566 KKQAEHIIWKQANYDPLTSLPNRRMLLEYLGTELLKSDRSKQ-HFALMFLDLDFFKEVND 624 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG +GD +LV +R+ ++ D++ARL G+ F ++L S + + A + + Sbjct: 625 ALGHDIGDLLLVETAKRLKGCIRESDVVARLGGDEFTVVLSSIADHKGVERVAEKILARL 684 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 + P +L ++ASIG + T +LK+A+ AMY AK G N F S Sbjct: 685 SEPFSLGSETAYISASIGITLYPDDAQTIDSLLKHADQAMYAAKGLGRNRYHYFTPSMQE 744 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 R+++ DL A+ E + + PI+ + +++ EALI+W HP+ G I SEF+ Sbjct: 745 YAKYRMLLIGDLRKAITKQEFEVYFQPIVDMNTMKVLKAEALIRWHHPERGIIPPSEFIP 804 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEGMQAL 817 +AEE +I I ++ E A+ WR+Q + I I IN + D ++ Sbjct: 805 VAEETGLIVDIGNWVFEEAAKQSAYWREQYGVE-IQISINKSPVQFRDERGCFESWIKR- 862 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + I + +E +++ L R GI ++LDDFGT S LSYL Sbjct: 863 LKELKLDSHGICIEITEGLLLDVDSGVSEKLLAYRDAGIQVSLDDFGTGYSSLSYLKKFD 922 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + +II MA + +IA+ + + + L GCDY Sbjct: 923 IDYLKIDQSFTQNLASDSDDQTLCEAIIVMAHKLGMKVIAEGVETQFQLATLVEAGCDYG 982 Query: 936 QDSHVASPLGFNSILK 951 Q + P+ + + Sbjct: 983 QGYLFSKPIPAKAFEE 998 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 2/154 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ + + + + + + E+ +L + S +WDWDI ++V A++LG Sbjct: 302 LLVISGLLDITSQKLAESAMCASQEQLALVLDSSELGLWDWDIKSNKVERNTRCASLLGC 361 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + ++ R W+ IH +DR + +D+ + E+R+ + W+ + Sbjct: 362 SVEELNRDERVWINAIHRSDRVDVLHSIDAHLKGETSHHSIEYRLNTFSGETIWIQDSGK 421 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + G +R G DIT +K+ E L A Sbjct: 422 VVSKDEQGSPVRMCGTHMDITARKR-GEESLNLA 454 Score = 67.7 bits (164), Expect = 1e-08, Method: Composition-based stats. Identities = 38/326 (11%), Positives = 77/326 (23%), Gaps = 29/326 (8%) Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF----------M 271 V + + F+ V + ++ + I Sbjct: 1 MIFTLVQNTALLLAMVFIYDAVPRKQRDEYLFLWQLSVGAIIGGITMTSVMASWEYSQGQ 60 Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 Y + + F G+ + +F S + + +V ++ Sbjct: 61 YFDARSVILGISGVFFGGLPTLIAVFLASIFSFYEGGVGVWFEIGMMVSAGLLGCLWRYY 120 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 RAV+ I I + + V LI + V Sbjct: 121 CH--RAVVDISNIQFYSFGMILQCITLLWLFILPFEMAVNTLNSVAFPTLIIYPV---AF 175 Query: 392 ATGYFSQGIFSDGER-----------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + ER + + + + P + +L Sbjct: 176 LLLSSLLARRLEMERDANIQLQDDLIFRSQFNIGNIGIAISSVDQHWIKVNPRVCQMLKY 235 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + W + D D + + + R A DN + + + Sbjct: 236 SEKELLAMK--WSDMTYFEDLQTGLNQFDRMLKGEIDEYEMDMRFVAKDNSIVYTHLTVA 293 Query: 501 PMSNSNGDILRYIGIANDITEQKKSL 526 N +L I DIT QK + Sbjct: 294 CQR-KNNKVLLVISGLLDITSQKLAE 318 >gi|327482683|gb|AEA85993.1| sensory box protein [Pseudomonas stutzeri DSM 4166] Length = 642 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 152/620 (24%), Positives = 277/620 (44%), Gaps = 16/620 (2%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQ-PALVGGLVLIVILIGFTVIQHVLATGYFS 397 A + I + L ++ + AL L ++ + + Sbjct: 12 YFCLAMLWILLGDTLLGQLVSGDGQAWQMGKGALFVTLTSALLFVLGRRHVRRFDEQQRA 71 Query: 398 QGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 Q + ++ + + + V D + V P + I G ++ + G + + Sbjct: 72 QHLQETSLKQAAAVFDSTQEGVLVTDPQQHIVHVNPAFSRITGYSTEEVLGQTPKLFASG 131 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D +R + + G E R + + + +R + ++ G + Y+ + Sbjct: 132 KH--DAAFYRQMWQAL--QEDGVWSGEIWNRRKNGEVYPQWQNLRCIYDNEGQLSHYVAV 187 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D++ K+S E + A D L +PNR F +R L+ + + +++ID+D Sbjct: 188 FSDLSALKRSREELDQLAHFDPLVNLPNRLLFTERAKQDLERARANKR-SGALLLIDLDH 246 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IN+ LG +GD +L +++ R+ E L+ L RL G+ F ++ + K A+ Sbjct: 247 FKDINESLGHNLGDTLLQAVSARLSEQLESGMTLGRLGGDEFALLCEDYG-AEKATALAL 305 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + + P L ERE+ +ASIG + + ++++NA+ A++ AK G + Sbjct: 306 RILDRLNEPFRLGERELFSSASIGIVLYPYPTDVQNVEQLMRNADSALFKAKSSGRSTYA 365 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + S RV + L A+E +L + Y PI L I G EAL++W HP+ G Sbjct: 366 FYSQELTSQARQRVELVTALRQALEQGQLRMDYQPIYDLRQGSISGFEALVRWQHPEKGL 425 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS + F+ IAEE +I AI+ ++L++ W Q P FI +NI+S+ + +L Sbjct: 426 ISPAVFIPIAEETGLISAIDHWVLQQACHQAREWLGQ-GRPLGFIAVNISSRLFGNGDLD 484 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + +++ + + ++L +ES VM +P+ + LL RLR +G+ L +DDFGT S L Sbjct: 485 LQIATVLASSGLAARHLELEITESAVMQDPDGALELLQRLRALGVQLAIDDFGTGYSSLQ 544 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 L + +K + + G + AI RS+I +A N+ ++A+ I L Sbjct: 545 RLKRMNVHKLKIDQGFVRGLPADREDAAITRSVIGLAHNLGLKVVAEGIEIADQAAFLLE 604 Query: 930 MGCDYIQDSHVASPLGFNSI 949 CDY Q A P + I Sbjct: 605 QNCDYGQGYGFARPRPADEI 624 >gi|309779272|ref|ZP_07674034.1| sensory box protein/response regulator [Ralstonia sp. 5_7_47FAA] gi|308921830|gb|EFP67465.1| sensory box protein/response regulator [Ralstonia sp. 5_7_47FAA] Length = 864 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 139/560 (24%), Positives = 254/560 (45%), Gaps = 10/560 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + S D + +D R+ P + G + G + LP Sbjct: 295 TAELVTRERESRTLIENSPDTIARYDRESRRIYANPAFCALAGCSLTEALGKRPSELPG- 353 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D + S V Q+E R D Q +R+ P ++ G++ + + Sbjct: 354 --GDNARVYEKIISDVISSGTSAQFELRWAGKDGQEQCSHVRLTPETDQAGNVHSVLAVG 411 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D++++ I A D LTG+PNRQ F +RL R +M+ID+D++ Sbjct: 412 RDLSDRMAFEATIWKQANFDALTGLPNRQMFHERLAQEASEPGRIGR-RMALMLIDLDRF 470 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND LG GD +L+ +RIG ++ D +ARL G+ F +IL + +++ + A Sbjct: 471 KEVNDSLGHDRGDTLLIEAGKRIGSCVRQSDTVARLGGDEFTVILPNVDDAESVERIART 530 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + +A P L E ++AS+G + + KNA+ AMY AK+ G N F+ Sbjct: 531 IIGKLAEPFKLGADEAFISASVGVTFYPDDAHDLDVLFKNADQAMYAAKNAGRNRFSYFK 590 Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R+ + DL A+ + + + Y PI+ L E+ EALI+W HP+ G IS Sbjct: 591 PDMQVEAEQRLRLTSDLRTALPSGQFQVYYQPIVELATGEVCKAEALIRWLHPERGTISP 650 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEG 813 +F+ +AE+ +I I ++ ++ R WRD+ + P I +N++ + + LC Sbjct: 651 HDFISVAEDTGLIVPIGDWVFKQAVRQARQWRDRFH-PSFQISVNMSPVQMRQDGQLCAR 709 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +++ + + +E +++ R+ L LR GI +++DDFGT S L+YL Sbjct: 710 WPDFLAREGLPAQSVMVEITEGLLLQAESRTDETLLTLRSAGIGISIDDFGTGYSSLAYL 769 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 D +K + S + E A+ +++ +A + +IA+ + L + Sbjct: 770 KRFDIDYLKIDRSFVHNLSFDEDNQALCEAMVVLAHKLGLKVIAEGVETAEQRDFLKAVD 829 Query: 932 CDYIQDSHVASPLGFNSILK 951 CD+ Q ++P+ + + Sbjct: 830 CDFAQGFLYSTPVPPHEFER 849 >gi|254243382|ref|ZP_04936704.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126196760|gb|EAZ60823.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 760 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 143/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%) Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + D RQ+ AV + + V D V P I G S + G L Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D+ ++ + + E R + + + IR + N G + Y+G+ Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRVVRNDQGQLTHYVGVF 314 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +D++ K+S + A D+LTG+PNR +R+ L+ D + +++ID+D + Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD +L +++R+ L +L+RL G+ F I++ ++ + +A + Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P ++ + I ++AS+G + + ++++A+ A++ AK G N + Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ V ++ L A+++ EL + Y P+ L IVG+E+L++W HP+ G + Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE +I A++ ++L+R R + W+ + F+ +N++S+ L E + Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ P ++L +ES VM + E+S LL RLR +G++L +DDFGT S L L Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P +K + + G AI R+I+ +A++I ++A+ I + L GC Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSIGLRVVAEGIEHQDQALFLREHGC 731 Query: 933 DYIQDSHVASPLGFNSIL 950 D+ Q P ++ Sbjct: 732 DFGQGYWYGRPQPAEALR 749 Score = 140 bits (354), Expect = 1e-30, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + AW + + + +L + L +L+ +++ Sbjct: 17 IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + +R + A+ D +WDWD+V DR+ +P A ++GLA + PI W +H Sbjct: 76 LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + L + +R+R D + W+ R R + ++ G L Y G+A DI Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195 Query: 520 TEQKKSLEGILCNA 533 T Q+ + + A Sbjct: 196 TLQRLKEDHLRQAA 209 >gi|229112714|ref|ZP_04242248.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] gi|229147842|ref|ZP_04276183.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|228635492|gb|EEK91981.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|228670736|gb|EEL26046.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] Length = 909 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 52 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVLM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L+ + Q L T Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|311697006|gb|ADP99879.1| sensory box/GGDEF/EAL family protein [marine bacterium HP15] Length = 811 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 160/574 (27%), Positives = 262/574 (45%), Gaps = 12/574 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + +A I D RQ+ V S + V D+ + + I G Sbjct: 239 LIYAVAIDVTEARIADDKLRQAATVFQSTVEGVMISDLDNRIIEVNDAFSQITGYTEEEA 298 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + L +D F I S G + E R D ++ I + N Sbjct: 299 IGKTPDLLDS-GKHDPSFFNAIWQSVREN--GHWRGEIWSRRKDGSVFPELLTISTILNK 355 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + + + Y+ + +DI+ K E + A D LTG+PNR F RL + LS Sbjct: 356 D-EPVGYVTVFSDISTLKAHQEKLDYLAHHDPLTGLPNRLLFNSRLQQSIRLSERTGR-S 413 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ IDID++K IND +G GD++L + R+ E L+ D ARL G+ F ++L Sbjct: 414 IAVLFIDIDRFKNINDSMGHPTGDELLKHVAARLREQLRASDTAARLGGDEFVVLLEDIE 473 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + A + K+ + EI VT S+G + + ++E+L +A+ AMY AK Sbjct: 474 GAEHAGQVADTLMKAFKETFAMDGVEIGVTVSMGISLFPQDSNDAAELLADADAAMYQAK 533 Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + S + V + L AV +++L+L Y P L ++ G+EALI+ Sbjct: 534 ENGRNTYAFYSSESTARALEYVFFENALRRAVSDNQLFLEYQPQFDLEPGKLTGMEALIR 593 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G I+ F+ IAE+ I+ I ++L+ +W D I IN+A+ Sbjct: 594 WQHPDKGLITPDRFIPIAEQNGTIRNIGQWVLQTACHQGKAWLDAGLDIG-RISINVAAS 652 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 D + A++ ++ P ++L +ES M PER+ L LR+ I++ +DDF Sbjct: 653 QFHDENFLAEVLAIVDESGLPPEHLELELTESSFMHQPERAIPKLHALRERNITIAIDDF 712 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D +K + S + E+ AI+R+II + K ++ IA+ + E Sbjct: 713 GTGFSSLSYLKRLPIDKLKIDRSFVMDLPDDEEDKAIVRAIIGLGKTLKLKTIAEGVETE 772 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + CD Q + + PLG +++ L+ Sbjct: 773 AQVAFFKQAKCD-AQGFYFSRPLGTDAMDAFLRS 805 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D V T LG + G ++ ++H DR+ + + G ++ Sbjct: 156 DFEGKFVRVNGLWETKLGYRRDELEG--EVFIEFVHPEDREKTLSEAGRVIENSEGSSEF 213 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 E R R D + W+ +++ ++ + I D+TE + + + + A Sbjct: 214 ENRYRHKDGFYRWLSWSS--VTSPEAGLIYAVAI--DVTEARIADDKLRQAAT 262 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 8/130 (6%) Query: 412 LGSGDIVWDW----DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 G ++ + D + + + + + I D + Sbjct: 22 DGIPGAIFQYILHPDGTDQLSYISRGCVDLWEIEAAELKRDPGPLWEMILPEDVEGLARS 81 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + ++E+R++ A W+ P NGDI + + D+T ++++ E Sbjct: 82 IRGSAETMT-FWRHEWRIKPASGVVKWLSGTGTPKQRENGDIC-WNSVIIDVTRERQTQE 139 Query: 528 GILCNAFQDN 537 ++F D Sbjct: 140 --ALDSFFDQ 147 >gi|269964567|ref|ZP_06178806.1| hypothetical protein VMC_02360 [Vibrio alginolyticus 40B] gi|269830694|gb|EEZ84914.1| hypothetical protein VMC_02360 [Vibrio alginolyticus 40B] Length = 815 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 148/554 (26%), Positives = 258/554 (46%), Gaps = 13/554 (2%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + I G S + G L H + Sbjct: 267 QLSLASQIFNNSQEGMVITDRNANIIDVNTAFTQITGYRSEEVIGKNPRILRSGHHD--Q 324 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F L + + G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 325 GFYQQLWHQLENK-GQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR L L ++ + +DID +K IND Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLLSLLEQHIETGHKSQQT-FATLFLDIDHFKHINDS 442 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F IIL ++ + + + + Sbjct: 443 MGHFCGDQLLSKLAIRLQDVLHLNAHVARIGGDEFVIILPDIHSDVALLETVGDILSVFQ 502 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P +L + + V+ SIG A + S +LKNA+ AMY AK G N + Sbjct: 503 QPFDLANHDSLRVSTSIGIALYPRDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V I+ L A+E +L L + P L IVG+EAL++W HP++G + ++F+ Sbjct: 563 KSVSHVRIQSALHQAIEKQQLRLEFQPQYNLEQNTIVGVEALLRWQHPEFGLVPPADFIP 622 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I++I ++L++ +W DQ I +N+++ L + + ++ ++ Sbjct: 623 IAEKTGLIQSIGEWVLQQACLQGNAWLDQGIEFG-KIAVNVSALQLQQSNFIQRLRTILD 681 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 T Y R+ L +ES ++ +P+++ L +LR++GI ++LDDFGT S LSYL +P + Sbjct: 682 NTGYPAQRLDLEITESFLLIDPQQAIASLNQLRELGIEISLDDFGTGYSSLSYLKGLPIN 741 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ S AI+ +II M K + ++A+ I L GC Y Q Sbjct: 742 KLKIDRSFVSDVPSNSDSNAIVNAIIAMGKTLSLKVVAEGIETREQADYLFEKGCIYGQG 801 Query: 938 SHVASPLGFNSILK 951 + P+ + + Sbjct: 802 YLFSQPVSAEKLFR 815 Score = 45.3 bits (106), Expect = 0.056, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 7/187 (3%) Query: 350 WFIGLWMAITKR-LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + + +T + ++ L I I Q + Sbjct: 93 GELLAVLTLTHPNDQSTVVSAWLSAIAGRISFDINLHCQQEQTRHQSAEIKPTPTLQEFI 152 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + D VW + T + + + G + + F Sbjct: 153 DCLE---DHVWIKGMDGLYSMTNRSVENAWQKTNSEIIGK--DDFALFSHERAEKFIDAD 207 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 V + E R +N W+ P+ + G+++ +G+ +IT ++K +E Sbjct: 208 KLVVATGTQNIVEECRQIDENNNPTWLETIKSPVRDHAGNLIGILGMTRNIT-RRKMVET 266 Query: 529 ILCNAFQ 535 L A Q Sbjct: 267 QLSLASQ 273 >gi|297568270|ref|YP_003689614.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfurivibrio alkaliphilus AHT2] gi|296924185|gb|ADH84995.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfurivibrio alkaliphilus AHT2] Length = 979 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 149/578 (25%), Positives = 269/578 (46%), Gaps = 15/578 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + +R L A+ S D + D+ V P TI G Sbjct: 268 VARLAQLQREQAALRASEQRHRLLAAALDASRDGMVITDLKGKIVAINPAFTTITGYCQD 327 Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G R H DR ++ + S + G Q E R + + + ++ I + Sbjct: 328 EALGKNPRILQSGRH--DRAFYQAMWASLK--KNGHWQGEVWNRRKNGEIYPELLSISTV 383 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G Y+G+ D+T ++S E + A D LTG+PNR RL L+ + + Sbjct: 384 YDDGGQPAYYVGVKTDLTSLRRSEEQLQYLAHHDPLTGLPNRLLLEARLEHGLERARREG 443 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + VMVI++D+++ IND LG A GD +L +++R+ + ++ D LARL+G+ F ++L Sbjct: 444 G-KLAVMVINLDRFRTINDSLGYAAGDRLLEEISQRLRDCVRAEDTLARLAGDEFALVLE 502 Query: 623 SENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 ++ + +++++ P L E E + SIG + + T +L+ A++A+ Sbjct: 503 MIHDYREAEIMGRRLQQALDEPFTLPDEYEAFMHLSIGISVYPQDGDTVDILLRGADIAV 562 Query: 682 YHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 AK GG V ++S + ++ L A E E L Y P + L +VG+E Sbjct: 563 GLAKEGGGGQVFYTSADLNSQARRTLELEGALRRAQEQGEFLLYYQPKVDLHSGRVVGVE 622 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W P G +S EF+ +AE +I + +++ R I +WR+ + + +N Sbjct: 623 ALLRWRRPGHGLVSPGEFIPVAERSGLIADLGTWVIHEACRQIQAWREAGLGE-VRVAVN 681 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++++ +L E + + + L +ES++M NPE + + L+++G+ L Sbjct: 682 VSARQFNHGDLKEILAGALKTHDVKGELLTLELTESMLMLNPEEAITRMATLKELGVKLA 741 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S S L P D +K + S + G I SII MA + ++A+ Sbjct: 742 LDDFGTGFSSFSSLSRFPIDQLKIDRSFVAGLAVEADASTIAVSIIAMAHRMGLKVVAEG 801 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + E+ L + GC+ +Q + PL + +LL++ Sbjct: 802 VETEVQSGYLRQNGCEEMQGFLFSKPLPAEELAELLRQ 839 >gi|91782791|ref|YP_557997.1| putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with PAS/PAC and Chase sensors [Burkholderia xenovorans LB400] gi|91686745|gb|ABE29945.1| Putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with PAS/PAC and Chase sensors [Burkholderia xenovorans LB400] Length = 929 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 150/578 (25%), Positives = 258/578 (44%), Gaps = 14/578 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + ++ + E+ + +W W P + G Sbjct: 331 RAIRLASGMTRELRESEEKFRAIADCTVNLEIW-WGPDGKPRWINPSVDHYTGYTVAECM 389 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 IH +D + + RG EFR D W+ + P+SN+ Sbjct: 390 AMPNFARTLIHPDDVERVAPEFQKGLQGFRGD-DLEFRCVRKDGSLLWLSLSWVPISNAR 448 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 GD + + DITE+KKS E I AF D LT +PNR LDRL + ++ ++N+ Sbjct: 449 GDFVGFRTSGRDITERKKSEEKIRELAFYDTLTRLPNRALLLDRLRESMA-ASRENNVCG 507 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN- 625 +M ID+D +K +ND LG GD +L + R+ + D +AR+ G+ F ++L + + Sbjct: 508 ALMFIDLDHFKTLNDTLGHDKGDLLLRHVAYRLSSSVSKGDTVARVGGDEFVVVLGNLSL 567 Query: 626 ----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + + + L + TASIG + + ++ E+ K A+LAM Sbjct: 568 NKAAATAETEAAGEKILAVLGRAYELNGVQFRSTASIGVTVFNGEQTSTDELFKQADLAM 627 Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y +K RG N + F + + R ++ L A+E + L Y + + + I G E Sbjct: 628 YKSKERGRNAMCFFDPAMQTTVLKRAELEVGLRSAIEENRFVLHYQAQV-VDGDHITGAE 686 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP G I +EF+ +AEE +I I +LE + W + M + I +N Sbjct: 687 ALVRWEHPVCGLIPPAEFIPLAEETGLILEIGRMVLESACAQLALWATEPQMAHLSIAVN 746 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++++ + + E + +I++ R+KL +ESV++ N E +G LR G++ + Sbjct: 747 VSARQFREPDFVESVLGVINRKGARADRLKLELTESVLVENVEDIIEKMGALRARGVTFS 806 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 LDDFG S LSYL +P D +K + S + I R+I+ +A++ + +IA+ Sbjct: 807 LDDFGIGYSSLSYLKRLPLDQLKIDRSFVRDILEDPNDADIARTIVALARSFDLGVIAEG 866 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + E L GC Q PL S + + Sbjct: 867 VETEAQRDFLAVAGCHAYQGFLFCKPLPVRSFEQFVAS 904 >gi|241765653|ref|ZP_04763605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Acidovorax delafieldii 2AN] gi|241364500|gb|EER59589.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Acidovorax delafieldii 2AN] Length = 1624 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 145/585 (24%), Positives = 255/585 (43%), Gaps = 17/585 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + I A+ + + R Q+ + + D + D+ + + Sbjct: 1043 FVTSTLQIFATRASAEIDRQLADMRIRHQASLLDKAQDAIIVRDLDHRIIYWNKSAERLY 1102 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + G + + +D FR + V G E R D + R Sbjct: 1103 GWSQLQALGQS---IETLLYDDPAQFRRATQTTVEQ--GEWTGEIVQRHRDGSPIDVEGR 1157 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + G + I DI E+K + I AF D LTG+PNR +DR+ L + Sbjct: 1158 WTLVKDDAGRAHSVLAINTDIRERKATEREIQRLAFYDPLTGLPNRMLLMDRIGQALATA 1217 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ ID+D +K +ND LG GD +L + R+ ++ D +ARL G+ F Sbjct: 1218 QRRHQG-GALLFIDLDNFKTLNDTLGHDQGDLLLQQVAHRLNNCVRSVDTVARLGGDEFV 1276 Query: 619 IILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++L + + +A+P L + T SIG A + + T E+ Sbjct: 1277 VMLEELSPQPDELALDARAVGEKVLAMLAVPYALKGYQYRSTPSIGIAPFDGDQATVGEL 1336 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731 LK A+LAMY AK G N + F + ++ED A+ N E L Y P + L Sbjct: 1337 LKQADLAMYQAKTAGRNTLRFFDPAMQDVVTARAALEEDFRTALANDEFLLHYQPQVNLA 1396 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + VG+EAL++W HP+ G +S +EF+ +AEE +I ++ ++L + W+D + Sbjct: 1397 -GQCVGVEALVRWAHPQRGLVSPAEFIPLAEETGLILSLGRWVLHTACTQLALWQDDPML 1455 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +N++S+ + + +++ T +KL +ES+++ + E + + L Sbjct: 1456 SELTMAVNVSSRQFRHASFVDDVARVLAITGAPSGLLKLELTESLLVEDMETTIATMAAL 1515 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 G+ +LDDFGT S LSYL +P D +K + S + AI+ +II +++++ Sbjct: 1516 GAYGVGFSLDDFGTGYSSLSYLKRMPLDQLKIDQSFVRDLLTDPNDAAIVDTIIGLSRSL 1575 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +IA+ + L R GC Q + PL S+ L+ Sbjct: 1576 GLEVIAEGVETPEQRDLLARAGCHLYQGYLFSRPLSAGSLEAFLR 1620 Score = 129 bits (325), Expect = 2e-27, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 60/149 (40%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 Q + A Q + ER L + D +WDW++ D + + + G+ G Sbjct: 292 GAFQDITAHHQADQALRISEERFHLVARATADAIWDWNLATDAMWWNEGMQHLFGIPPGE 351 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + R+W +H + + + + E+R R D+ + W++ R + + Sbjct: 352 LLPDSRSWTLRLHPEESAALLQSIQAAIEGNDTHWTAEYRFRRRDDSYAWVLDRGFLIRD 411 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNA 533 + G +R +G DI+ QK + +A Sbjct: 412 AQGRAVRMVGGITDISAQKLAEIEAGRDA 440 Score = 81.9 bits (201), Expect = 5e-13, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 93/296 (31%), Gaps = 16/296 (5%) Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299 + + E + + A + + + +L +R K +A+ C Sbjct: 18 AYAILDTPPEASFDQLATLAARLCNTPMAVVNFLDRDRQWFKAAVGVPFRQTELAVALCA 77 Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359 + IA + + + G L ++ F+ +A+ Sbjct: 78 NALRGGREPLIAADARTHPLFASSPLVT-----GKPHIRLYACVPLVTPEGFVLGTLAVL 132 Query: 360 KRLDNDIIQPALVGGLVLI---VILIGFTVIQHVL-----ATGYFSQGIFSDGERQSLAV 411 + + + G +L ++L+ Q +L + GE +A Sbjct: 133 DTVPRMLTSEQVEGLKMLASQAMVLLELRRQQRLLSELVQERDRMHAELMDQGETLRVAG 192 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + W ++ R+T + +I T GL S G + L R L Sbjct: 193 RIARIGGWTLELPGRRLTWSQEIVTTFGLPGRS--GTLDEILALYAPPYRARLEKALADC 250 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + R + V+ D ++ W+ + + G ++R G DIT ++ + Sbjct: 251 I-GRGTPFDLQAEVQMPDGRYFWVRTAGLAVHDEQGRVVRVQGAFQDITAHHQADQ 305 >gi|117925510|ref|YP_866127.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Magnetococcus sp. MC-1] gi|117609266|gb|ABK44721.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Magnetococcus sp. MC-1] Length = 971 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 136/555 (24%), Positives = 267/555 (48%), Gaps = 12/555 (2%) Query: 406 RQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDN 463 R + + + + + P + I G + G + L H D Sbjct: 410 RLAQVLFRTTNEALMISSRDNKIEMVNPAFSRITGYQLDEVLGKGPDLLQSGRH--DAPF 467 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + + + G + E R + + + I ++N G+ ++Y+ +DIT++K Sbjct: 468 YTQMWHAL--QQDGAWEGEIWNRRKSGETYPEWLSIATVTNDKGETVQYVAAFSDITKRK 525 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ E IL A D LT +PNR F DRL T L S + ++ ID+D++K +ND L Sbjct: 526 QAEETILHQANYDFLTDLPNRNLFHDRLQTELKRSQRSGQ-QVALLFIDLDRFKFVNDTL 584 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L + R+G ++ D +ARL G+ F +IL + +A A M + Sbjct: 585 GHNVGDQLLREVAIRLGHCVRESDTIARLGGDEFTVILPELHGPEGVARLAQGMIDKLEE 644 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 + + E+ ++ASIG + +++KNA++AMY AK G + +++ Sbjct: 645 RYCIQDHELFISASIGITIYPEDADNMMDLVKNADVAMYRAKENGRGSFCFYTAEMNADA 704 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I++ L +A+E + ++ Y P ++ I G+EALI+W + + +F+ +A Sbjct: 705 RQLHKIEQALRVALEEGQFWIHYQPYVQQSSGLITGVEALIRWRNSAGEIVYPDQFIPVA 764 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I I L++L + I W+ + P I +N++++ + L ++A + + Sbjct: 765 EETGLIVPIGLWVLRSVIGVIAQWQRE-GHPDITFSVNVSARQFQEGHLVGQIKAALQEN 823 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 +P + L +ES+++ +PE + +L ++ +G+ + LDDFGT S L YL P D + Sbjct: 824 QINPQSLMLEITESLMIRDPEHTLNMLKEIKALGVRVALDDFGTGYSSLGYLKQFPIDLL 883 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + G ++ ++ +I+ MA ++ +I + I + ++ + CDY+Q Sbjct: 884 KIDRSFINGIANSQDDETMVSAIVSMAHSLGVGVIGEGIENDQQLQRVNLHACDYVQGFF 943 Query: 940 VASPLGFNSILKLLK 954 + P+ ++ + + Sbjct: 944 YSRPMPYDELALFFE 958 Score = 65.7 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 80/249 (32%), Gaps = 14/249 (5%) Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 + + I + AS + + +L + G A + Sbjct: 176 WGWMVGSGIYVDDVEHIFQDAASAFMAVILTALLVVWAISVKIGRSITRPLFQTRQAMLR 235 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 + + + + R + + AL I G + Q E Sbjct: 236 LANGDLDVPLEDMDRSELGDLSQALRVFRDQFAINEGLR----LEREESLKQAAEKREE- 290 Query: 407 QSLAVLGSGDIV--WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 + + S +V W+ D + + IL S+ ++ D Sbjct: 291 LARIIEISHTVVLSWENDEEWSLSYVSENCYRILQSGLKSLVLKP-----LVNPEDLPQM 345 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 +L + R ++ EFR+ + W + P+ + + ++++Y G+ +DITE++K Sbjct: 346 EALLAAGGDASR-WVKLEFRLCLGSEEPRWFECCVLPIKDDHAEVVQYHGVLHDITERRK 404 Query: 525 SLEGILCNA 533 E L A Sbjct: 405 -GEHDLRLA 412 >gi|229072768|ref|ZP_04205967.1| Sensory box/GGDEF [Bacillus cereus F65185] gi|228710259|gb|EEL62234.1| Sensory box/GGDEF [Bacillus cereus F65185] Length = 885 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 28 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 84 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 85 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 138 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 139 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 198 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 199 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 258 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L+ + Q L T Sbjct: 259 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLRTE 318 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 319 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 376 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 377 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDTYYLHVTAVPIFLKE-KISG 433 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 434 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 492 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 493 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 552 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 553 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 612 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 613 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 672 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 673 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 731 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 732 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 791 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 792 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 851 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 852 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 879 >gi|170724420|ref|YP_001758446.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908] gi|169809767|gb|ACA84351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella woodyi ATCC 51908] Length = 810 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 134/566 (23%), Positives = 266/566 (46%), Gaps = 16/566 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R AV S + +WDW++ + V + +LG + + W +H Sbjct: 236 QLNDSQKRWLFAVEISKNGIWDWNLKSNEVFLSDRWKEMLGYEVDELKHELNTWQELLHP 295 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517 D+ +L+ ++ + R+R + + W++ R + + G +R IG Sbjct: 296 EDKIEALKLLNQYLNNEMEEFESVHRLRHKEGHYIWVLDRGMVVDWDETGAPVRMIGTHT 355 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+++ ++ + I+ D LTG+ NR + LD L + + VID+D +K Sbjct: 356 DVSDDVRNQQAIIHQTKHDILTGLANRSALLDELYAL---KVQQQGDFAALFVIDLDNFK 412 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIAD 632 IND LG GD +L+ + R+ ++ARL + F +++ S + + Sbjct: 413 MINDALGHHRGDRILIKVAARLSSHFSTNVLIARLGSDEFVLLVKSLGDDLTSVNRRTVA 472 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNH 691 A +R+ + ++ + I ++AS+G + + +ML++A+LAM+ AK +G + Sbjct: 473 LASQIRQMVGRSFHITNQTINISASVGICVLNDLANMEPEQMLQHADLAMHQAKEKGRDA 532 Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + + I +L A+ +L LV+ PI+ D EIV E L++W HP+ Sbjct: 533 HAIYNTEMEEIVQKSLWISSELKRAIVKEQLSLVFQPILD-RDGEIVCAEVLLRWTHPEK 591 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS +EF+ +AE +I+ I ++L+ I + + + + IN++++ + Sbjct: 592 GPISPAEFIPVAEGSGLIQEIGYWVLKETCYFINRLKARGIVLS-SVAINVSARQFNQDL 650 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 E + I + + I+L +E ++ N + + + L++ GIS+ +DDFGT S Sbjct: 651 FVENLLTEIMEQGLAADTIELELTEYALLTNLDIIKQRMHVLKESGISIAIDDFGTGYSS 710 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL +P +K + + ++ E AI+++II MA ++ ++A+ + + + L Sbjct: 711 LSYLQTLPLSRLKLDAAFVSKIGENDASNAIVKAIINMAHSLNLKVVAEGVETQEQHQFL 770 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 CD Q + PL + ++ L Sbjct: 771 RDHDCDTFQGYLFSRPLDEEAFIQSL 796 >gi|228924036|ref|ZP_04087312.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835526|gb|EEM80891.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 909 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 344/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 52 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + + + + + Sbjct: 223 YFIPEYSMFTVTPFYQVTLALVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L+ + Q L T Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ ++ LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLEKIATSNMKLARLAGDEFTILIENYKKKPDVQ 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G N Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 756 LIESISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 876 QKHNCKYMQGYYFSKPLTSNEFIKFLQK 903 >gi|119775582|ref|YP_928322.1| sensory box protein [Shewanella amazonensis SB2B] gi|119768082|gb|ABM00653.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella amazonensis SB2B] Length = 1036 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 143/561 (25%), Positives = 257/561 (45%), Gaps = 13/561 (2%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 E + S + + D + +T A I G + + G + + Sbjct: 452 QEQMELAASVYNNSSEAMSVMDHKGNIITVNAAFADITGYSPKEVLGHHISQFYC--PRN 509 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F ++ + GR Q E + + + + + + + + ++ R + + +DIT Sbjct: 510 KPAFYDEVNQAIKE-TGRWQGEMWQQHKNGKEYLIWLTVNTIYDAYQRPHRRVALFSDIT 568 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K + I A D LT +PNR+ LD L + L++ N+R ++ +D+D +K++N Sbjct: 569 EKKAQEQLIWQQANYDPLTKLPNRRMLLDYLDREISLASR-QNVRFALLFLDLDFFKEVN 627 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L+ RI ++ D++ARL G+ F +++ ++ + A + K+ Sbjct: 628 DTLGHDMGDKLLIECADRIKACIRDSDVVARLGGDEFTVLIRDIHDVGGVERAASNILKA 687 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698 IA P L ++ SIG + T +LKNA+ AMY AK +G N F + Sbjct: 688 IAEPFQLGPDSAYISVSIGITLFPEDASTREALLKNADQAMYAAKEQGRNRFNYFTPSMQ 747 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ + +DL +A+E+ + LVY PI+ L ++ EAL++W HP+ G IS +EF+ Sbjct: 748 EQAKYRMRLIQDLRIAIEHQQFNLVYQPIVHLQSGKVHKAEALLRWHHPERGYISPTEFI 807 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD--NELCEGMQA 816 +AE+ +I I ++ E AR W + I + +N + D + A Sbjct: 808 PVAEDTGLIMEIGSWVFEHAARQCRDWHHEFGTT-IQLSVNKSPVQFRDEGENFERWV-A 865 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + I + +E +++ L R GI ++LDDFGT S L+YL Sbjct: 866 LLEELELTHGGICIEITEGLLLDASSGVAEKLLTYRDAGIQVSLDDFGTGYSSLAYLKKF 925 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA+ + +IA+ + + L MGCDY Sbjct: 926 DIDYLKIDQSFTRNLENDASDRTLCEAIIVMAQKLGMKVIAEGVETAKQQEILKAMGCDY 985 Query: 935 IQDSHVASPLGFNSIL-KLLK 954 Q ++P+ + LK Sbjct: 986 AQGYLYSAPVSREEFETRFLK 1006 Score = 127 bits (319), Expect = 1e-26, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 1/153 (0%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + A + + E+ SL + + WDWD+ D + A +LG + Sbjct: 307 LVIAGFMDISAQTQSEMSVRASREQLSLVLASAELGFWDWDLNNDVIDRNERCADMLGCS 366 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 M R W+ IH +DR +D + E+R+ + + W+ R Sbjct: 367 VDEMRHNHRIWMDSIHPDDRMAVLKSIDRHLQGHTDSHNVEYRIIRKNGETLWVRDTGRV 426 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 M +S+G +R G+ DIT+ + + E + A Sbjct: 427 MQKDSSGKAIRMCGVHLDITQVRHNQEQMELAA 459 Score = 61.5 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 31/287 (10%), Positives = 79/287 (27%), Gaps = 12/287 (4%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFM-YLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 + L + + + S+ F Y V + F + + M+ Y Sbjct: 36 WVWHIMLGLVIGAIGMTIMSARYEFAEGIYFDTRGVLLSVSGLYFGAVPTLIASAMMAIY 95 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362 + A + + + + I + + + + +L+ + + + + Sbjct: 96 RYGMG-GPAMVAGIAGIAFAAAMGILWRIPWQKNLIEVSTGSLLLLGMLVNIGSLLCFFI 154 Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-------RQSLAVLGSG 415 + LV + V+L+ + I D + Sbjct: 155 MPFDLAWELVSTIGTTVMLVCPLATLLLARLLARRLEIERDEKIKLQDDFLFRSQFNVGN 214 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 + + + + P + +L + + NW H D + + Sbjct: 215 IGIAITSVDKRWIKVNPRLCQMLKYSEKELL--SMNWEQMSHEEDISVDLAHFNQMLAGA 272 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + R A D + + + + G + I DI+ Q Sbjct: 273 IDQYELNKRFYAKDGSIVYTHMTVACKRIA-GKVQLVIAGFMDISAQ 318 >gi|326943099|gb|AEA18995.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 909 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 52 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L+ + Q L T Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 876 QKHKCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|88860451|ref|ZP_01135089.1| putative orphan protein; putative conserved domain [Pseudoalteromonas tunicata D2] gi|88817649|gb|EAR27466.1| putative orphan protein; putative conserved domain [Pseudoalteromonas tunicata D2] Length = 963 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 154/568 (27%), Positives = 269/568 (47%), Gaps = 11/568 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + R S AV SG V + + P + + G + G Sbjct: 396 QRIIEKEQAEKSANRLSKAVEFSGSGVAIANANFEIEYVNPKLIEMSGFENDHFLGAP-- 453 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L I + + I R + + ++ +N W+ + + P+ + I Sbjct: 454 LLSIISSDMQILLDDIDLDIRS--RHHWRGDTVLKNKENHPIWVSLSVSPIRELDNSISS 511 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ A DI+ K+S + A+ D LTG+ NR F +L + L+ + + Sbjct: 512 YVASAQDISFVKESQRKMEQLAYFDTLTGLANRAFFRMQLRKSMALAER-GHYAFALFYF 570 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K+IND LG GD +L+ + R+ + L+ D +ARL G+ F ++L ++ K A Sbjct: 571 DLDEFKRINDTLGHDAGDQLLLQVANRLKQRLRAEDTVARLGGDEFAVLLSGIDDKSKAA 630 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + A+ ++++I+ PI L E+ ++ASIG ++LK+A+LAMY AK +G N Sbjct: 631 EVAMIIQETISQPIKLGSNEVIISASIGITMAPDDSPEEDQLLKHADLAMYEAKAKGRNT 690 Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ +R+MI+ +L +A++ + L Y P + E+VG EALI+W HP Sbjct: 691 YHFYNQELNAAAKERLMIENELRIAIKEQQFELYYQPQVDCRTNEVVGFEALIRWFHPTQ 750 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS +F+ IAE +I I ++L R +Q I IN++++ D+ Sbjct: 751 GMISPVKFIPIAEATGLIVEIGEWVLWEACRFAKRLEEQGRGNN--ISINLSARQFKDSN 808 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ KT S + L +ES++MG+ E + L L+ +G+SL++DDFGT S Sbjct: 809 LKALLSRILVKTSISAQSLHLELTESMLMGDVEVAINQLLELKMLGVSLSIDDFGTGYSS 868 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL P D +K + S + + I +II MA+ + ++A+ + I L Sbjct: 869 LSYLKRFPVDILKVDRSFVKDIPADSNDMEITAAIIAMAQKLNLNVVAEGVETSEQITFL 928 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 C +Q + PL + +L K+ Sbjct: 929 KNNNCYIVQGYFFSPPLAEAQVPELYKQ 956 >gi|326388958|ref|ZP_08210540.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Novosphingobium nitrogenifigens DSM 19370] gi|326206558|gb|EGD57393.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Novosphingobium nitrogenifigens DSM 19370] Length = 804 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 168/727 (23%), Positives = 299/727 (41%), Gaps = 34/727 (4%) Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315 + +LI + + +R V + + I Sbjct: 81 VWLVLWGIALIGAVLGSIMLDRHLNPVDQRRIDLSVMRRQASGTAALALVWAVPILCFGP 140 Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK--RLDNDIIQPALVG 373 + + ++ + L +A L + A+ Sbjct: 141 WLNTSQRGVVWAIMALLIAGMGFAFAAVPLGSLVFGLVLGLAGIGSFFLYGEYTAAAVAA 200 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVT 429 V+ V + + L G+ E SL + G D +W D R Sbjct: 201 CFVIFVAVGVAEAARIFLDGKLAEAGLEDKEEVVSLLLREFEEGEADWLWQIDATRRVRN 260 Query: 430 TTPDIATILGLASGSMHGPI-------RNWLP-YIHINDRDNFRTILDSFVGYRRGRLQY 481 +P A LG + + G W + H + L + R Sbjct: 261 VSPRFAFALGYEADDVEGKPLIQLIAGETWETGFFHPS-----LHDLAERLKRRESFSNL 315 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 RV +D Q W + P ++ NG + + G+ +D+TE+++S E I A D LTG+ Sbjct: 316 MVRVTLSD-QQRWWELSASPRTDGNGAFIGFRGVGSDVTERRESEEQIAYLARFDMLTGL 374 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR L + + ++ID+D++K +ND LG VGD +L S+ R+ Sbjct: 375 PNRMQLTAALDEAMRRADHWRGC-CAFLMIDLDRFKAVNDTLGHLVGDRLLKSVADRLRN 433 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L+ + RL G+ F I+L ++ ++ A + ++ P + + + AS+G A Sbjct: 434 LVGEYGLCGRLGGDEFAIVLGQGVDNERVHAVADRVIAGLSQPYTVDQHTFYIGASVGSA 493 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 T +++NA+LA+Y AK GG + S +R ++ L A+E E Sbjct: 494 IGPRDGATVETLMRNADLALYRAKDGGGGVHCGYEPSLHADAEERRQLEFALRHALERDE 553 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 LVY P++ +V EAL +W P+ G IS S F+ IAE+ +I I + L Sbjct: 554 FSLVYQPVVDAETGTVVSFEALARWKSPELGPISPSRFVPIAEDTRLIVPIGAWALRTAC 613 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + W D PI I IN++ + LL+ + + + ++ + P R+++ +ESV + Sbjct: 614 FEAARWPD-----PIKIAINVSGEQLLEAGFADTVISALAASGLPPHRLEIEVTESVFLR 668 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TEKRI 896 + + L R+ +G + LDDFGT S L YL I F T+K + S + G+ + + Sbjct: 669 DGTVAEETLQRIIALGCGVALDDFGTGYSSLGYLRKIRFSTIKVDRSFVQGAARYNPESL 728 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 AI+R+++ MA ++E + A+ + E ++ + ++GC IQ + P+ +L+ Sbjct: 729 AIVRAVVAMADSLEMSTTAEGVETEEELAMVRQLGCRKIQGYYFGRPMTTEKARELVA-- 786 Query: 957 FPLVKNT 963 PL + T Sbjct: 787 -PLARQT 792 >gi|241763392|ref|ZP_04761447.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] gi|241367434|gb|EER61745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] Length = 948 Score = 536 bits (1380), Expect = e-149, Method: Composition-based stats. Identities = 150/592 (25%), Positives = 269/592 (45%), Gaps = 11/592 (1%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS--DGERQSLAVLGSGDIVWDWDIVRDR 427 V + GF + V+ + +Q + + AV + + ++ Sbjct: 355 HWFELSVARIQDPGFADPRFVVLSRDVTQRMQDLDALRKLRHAVEQTPHSIIITNLRGQI 414 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P T+ G S + G L + + + + + E R Sbjct: 415 EYVNPSFTTVTGYGSDEVMGRNPRMLGA-GKTSAEVVAQMWERLLSGLA--WKGELLNRH 471 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + W + I PM + G I YI + DI+E+K + E I A D LTG+PNR F Sbjct: 472 KTGREVWEYVSISPMRDEQGAITHYISVQEDISERKSNEERIRHLANFDALTGLPNRAMF 531 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 R + L LS + ++ +D+D++K +ND LG AVGD VL+ + R+ LL+ D Sbjct: 532 SARFSQALGLSQRSEG-SLALLYLDLDRFKNVNDSLGYAVGDGVLIDVAHRLKALLRDED 590 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 ++R G+ F ++L + FA + ++ + + VT S+G A + Sbjct: 591 TVSRYGGDEFLVVLP-LTTAQGAVHFAERLHGELSKACQVESHALLVTFSVGIAMYPGDG 649 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYH 725 + +AE+AMY AK G +H F + I+ L A+ E+ L + Sbjct: 650 SDMEALTHHAEVAMYKAKEMGRDHYCFFSADMQAQSSRLLRIENGLRTAIAQGEMSLHFQ 709 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P R+ D +VG+EAL++W HP+ G + +EF+ +AE I I L++L+ + W Sbjct: 710 PQWRVHDRRMVGVEALLRWTHPELGVVGPAEFIPVAESSGQIIDIGLWVLDTALACLRRW 769 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 RD + + +N++ +L E +Q + + ++L +ES+ M PE++ Sbjct: 770 RDA-GHTDLTVAVNLSLAQFRHPDLVEVVQKALQRAGVPAEVLELELTESIAMHEPEKAI 828 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIP 904 + L +G+ L+LDDFGT S SYL + +K + S + R ++I+R+I+ Sbjct: 829 ACVRALADLGVQLSLDDFGTGYSSFSYLQRLRVHRLKIDQSFVRNLDTARGMSIVRAIVE 888 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 M++++ IA+ + ++ L + CD +Q H++ PL ++ LL++R Sbjct: 889 MSRSLGLATIAEGVETPHQLEALAGLSCDMVQGYHLSRPLPVPALEALLEQR 940 Score = 48.8 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 27/261 (10%), Positives = 78/261 (29%), Gaps = 10/261 (3%) Query: 277 RWHAKVGYITFSGIACIAILFCMSF----YYPMVTASIARITLASIVLYYTYFIIYHGMK 332 R + G A+L+ + P + ++ ++ + ++ Sbjct: 139 RLRPVAFMLLLVGAIHAAVLYYPWILPETFVPATGLTGFKVGAEYGLIVLHVLVFGLLLR 198 Query: 333 GYERAVLLIPAWILIFIWFIGLW-MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 + +L + +GL T +D L L+ L + I Sbjct: 199 QMRQPTTFNAPPLLAAVGTMGLGEFFFTLYVDAADHFNLLGHIYKLLGYLFLYRSIIQG- 257 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + + D++++ + + + + G + Sbjct: 258 TIEAPYRALARSEKSLKAVLDAVPDLMFEMTRSGRYLRVHTRVPGLTERVPEQIAGRTID 317 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + RT L +F + D + HW + + + + R Sbjct: 318 --EVLPPDAAGVVRTALTQA-EATGHTQGQQFALEMTDGR-HWFELSVARIQDPGFADPR 373 Query: 512 YIGIANDITEQKKSLEGILCN 532 ++ ++ D+T++ + L+ + Sbjct: 374 FVVLSRDVTQRMQDLDALRKL 394 >gi|256828836|ref|YP_003157564.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum DSM 4028] gi|256578012|gb|ACU89148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfomicrobium baculatum DSM 4028] Length = 1262 Score = 536 bits (1380), Expect = e-149, Method: Composition-based stats. Identities = 142/576 (24%), Positives = 264/576 (45%), Gaps = 9/576 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + Q + S + D V T+ G Sbjct: 683 GTVMDITQRRAMQQALDRQMALFGQLFEDSPLAIALVDTVGRIAQVNGGFETLFGYKRAE 742 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G + +I + +Q E R + + + P+ Sbjct: 743 ILGKDNRLF-IVPEEQLSEINSIRQRILDGET--VQRETLRRTSRGDIVPVNLLGHPVR- 798 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G+I I DI+E+K+ I AF D+LTG+PNR F +RL ++ + + Sbjct: 799 IGGEITNIFWIYQDISERKEFERQITHQAFHDSLTGLPNRSLFRERLGRAVERTKRRPDY 858 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 M+ID++K+K +ND LG GD +LV + R+ ++ D +ARL G+ F I+L Sbjct: 859 HFAAMLIDLNKFKWVNDSLGHQAGDALLVEIASRLKSCVRSVDTVARLGGDEFAILLEEF 918 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + ++ A ++ + +EI AS+G T + ++L++A++AMY A Sbjct: 919 RTNKEVISVASRIQNEVRRAFLWNGKEIVSGASVGIVLQTRDCAGAEDILRDADIAMYKA 978 Query: 685 KHRGGNH-VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 K RG H V R+ + + ++ +L A+E + L L Y PI + ++ G EAL++ Sbjct: 979 KERGRGHLVFHNRMRQEVLEVINMENELRRAIEGNSLELHYQPIFDVDGGKLEGFEALVR 1038 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801 W HP+ G I F+ +AEE +I + +++ R + SW D++ + + +N++ Sbjct: 1039 WRHPEHGMIMPDRFIPLAEESGLIVPLGQWVVNAACRQLKSWDDESGTAEYGLTMSVNLS 1098 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 K + L + + + + +P R+KL +ES ++ +P + L RL++IG+ L +D Sbjct: 1099 CKQFAQHTLVDMILRALRENDIAPPRLKLEITESAIILDPAAAAEKLRRLKEIGVLLAVD 1158 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P D +K + S ++G+ ++ I+RSI+ MA ++ + A+ + Sbjct: 1159 DFGTGYSSLSYLRQFPMDILKIDRSFISGTDTPKENAEIVRSIVDMAHSLGLRVTAEGVE 1218 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++ L + CD Q + P+ ++++ Sbjct: 1219 TQEQLERLQSINCDRAQGYMFSKPMAPGDAGDMIRQ 1254 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 3/152 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440 + + + + E + + ++ + P +A I G Sbjct: 552 FFIGTFRDISERKRYENELRKAEENFRGIFENAVEGMFRTTPHGRYLQANPALAKIYGFE 611 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + + +++ R +G + +E +R D W+ R Sbjct: 612 SPAELMRHYDDISRQLYVE--AGRREEFIRLLGEKEEIFDFESAIRRKDGSVIWISENAR 669 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + ++ G+++ Y G DIT+++ + + Sbjct: 670 AVKDAAGNVVCYEGTVMDITQRRAMQQALDRQ 701 Score = 39.2 bits (90), Expect = 4.0, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 5/122 (4%) Query: 410 AVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 V + D + + ++ P + I G + + G + Sbjct: 454 IVKSAADAIIVFTTDTLRIISANPGASFIFGHPALRLEG--MTIPELLPAWGIPGSGDNE 511 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 S + R Q E R A+ + I S GD +IG DI+E+K+ Sbjct: 512 ASLLHAMRSSNQVEVTGRRANGSQVTLEAVITQSSGRQGD--FFIGTFRDISERKRYENE 569 Query: 529 IL 530 + Sbjct: 570 LR 571 >gi|302878381|ref|YP_003846945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581170|gb|ADL55181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 1013 Score = 536 bits (1380), Expect = e-149, Method: Composition-based stats. Identities = 142/575 (24%), Positives = 266/575 (46%), Gaps = 16/575 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 LA + R + A + + + D + +I G + + G Sbjct: 445 LAADITERQKVESELRIAAAAFEAQEGMLITDRHNVIMRVNQAFTSITGYLAEEVLGKNP 504 Query: 451 NWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 +L H D ++++ + +G+ + E R D + + + I + + ++ Sbjct: 505 CFLASGRH--DAGFYQSMWEGL--NEKGKWEGEVWNRRKDGEIYPEYLLISAVKDIKNEV 560 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 Y+ DIT K + I AF D LT +PNR+ DRL L SA + N+ ++ Sbjct: 561 ANYVATFRDITANKAAESEIKKLAFYDPLTLLPNRRLLTDRLNHALASSARNRNI-GALL 619 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN--- 626 ID+D +K +ND LG +GD +L + R+ ++ D LARL G+ F +IL + + Sbjct: 620 FIDLDNFKTLNDTLGHDMGDALLKQVALRLKSCIREDDTLARLGGDEFVVILENLSELAM 679 Query: 627 --SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + K + ++ L +E ASIG + ++ E++K A++AMY + Sbjct: 680 DAATKAELIGEKILAALNQVYPLASQEYHGAASIGVTLFAGHALSIDELMKQADIAMYQS 739 Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F + + + ++ +L AV+ +L+L Y + + EALI Sbjct: 740 KKSGRNTLRFFDLDTQKIINERAELEIELRKAVDKKQLHLHYQIQLN-SVGTPLSAEALI 798 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP G IS + F+ +AE+ +I I ++L+ + SW+D+ + + +N+++ Sbjct: 799 RWVHPVRGLISPAHFIPLAEDTGLILPIGQWVLDTACAQLHSWQDERFTQDLTLAVNVSA 858 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K ++ + + +P +KL +ES+++ N E + + LR++GI +LDD Sbjct: 859 KQFHQKNFVALVKETVQRHAINPKLLKLELTESMLVENIEDIIVTMNALREMGIQFSLDD 918 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L YL +P + +K + S + + AI+R+I+ MA+++ +IA+ + Sbjct: 919 FGTGYSSLQYLKRLPLNQLKIDQSFVRELSSSSSDRAIVRTIVAMAESLNLNVIAEGVET 978 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E L +GC+Y Q P+ + +L Sbjct: 979 EEQHTLLQDIGCNYYQGYLFGKPMPIEQLDAILAR 1013 Score = 81.5 bits (200), Expect = 6e-13, Method: Composition-based stats. Identities = 60/419 (14%), Positives = 127/419 (30%), Gaps = 46/419 (10%) Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 A++ F + I SF ++ L ++ T + AV Sbjct: 82 SARLMRFRFGVLVSGVIWGGASFLLFPQENLPHQMFLIFMLAGLTTASVVSYSADLVSAV 141 Query: 339 LLIPAWILIFI--WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 + + + I I ++ + + ++ I+ Sbjct: 142 IFALSIVTPLIARLLIVSDELAMAMAIAVLLYLGFLMVSLRLINRNLIENIRMRHEGELR 201 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + ER L + S ++ +D+ A ++G ++G L Sbjct: 202 EAAMNVSKERYRLLLAHSPVGIFHYDLNFVITYCNARFAELIGCPVAQVNG-----LDLY 256 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +++D L + + RG + +++ D W+ + ++ G+++ I I Sbjct: 257 NLSDNA-VLPALTAALAGDRGYFEGQYQAVFNDG---WIAMTCAASCDARGNVIGGIAIV 312 Query: 517 NDITEQKKSLEGILCNAF--QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I E+K + E L + D R+ F L NL + ++ +D Sbjct: 313 ESIHERKMA-EMALALSNQKHDEE-----RKLFQTILD----------NLPLGMWMLGVD 356 Query: 575 K-YKKINDVL----GIAVGDDVLV-SLTRRI----GELLKFPDILARLSGNRFGIILISE 624 K +N+ GIA D + + + K D + G Sbjct: 357 GKIKFVNETFCNALGIAAHDFFDAGHYSDLLPLSIADKCKESDRACFMQGE-------PH 409 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + + L + VT IG A+ + + L+ A A Sbjct: 410 YSTEWLPFTDGRAHLLEMTRVRLHDSANNVTGLIGLAADITERQKVESELRIAAAAFEA 468 >gi|241765598|ref|ZP_04763555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] gi|241364595|gb|EER59649.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] Length = 695 Score = 536 bits (1380), Expect = e-149, Method: Composition-based stats. Identities = 133/587 (22%), Positives = 271/587 (46%), Gaps = 20/587 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L F +I + + ER + + + + + + G Sbjct: 121 LGSFVLITDITDRWRAEATVRQSEERMRKFTEATDEAI-VFHRDGVITDGNEALTRLTGY 179 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + G R+ +I +R + + R YE +R D + + + Sbjct: 180 SLAEVLG--RSIFNFISPE----WRAVAYEYTRGGREH-PYEVTIRHKDGHTIPVEVVGK 232 Query: 501 --PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 P +++ I+ + DIT +K++ E A D LT +PNR+S +++L L ++ Sbjct: 233 TMPQLHADYRIV----VVRDITARKEAQERETFLALHDTLTQLPNRRSLMEQLGKALSMA 288 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + V+ I++D +K +ND LG GD +L + R+ + ++ D++ARLSG+ F Sbjct: 289 RRR-KSQVAVLFINLDHFKTVNDSLGHHAGDQLLRDVAERLRQGVRETDLVARLSGDEFA 347 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 +L + A A + +++ + + +T++ SIG + + T+ +L+ A+ Sbjct: 348 AVLTDIASPADAAMVADKLLEAMRGVFTVDQLPVTMSPSIGISMFPCDDATAEGLLRCAD 407 Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMYHAK G + + ++ D + + L A+ L Y P IRL D + Sbjct: 408 TAMYHAKDSGRGNRQFYQPGMDASAKDVLQQERLLREAIAEGAFVLHYQPQIRLADGSLQ 467 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP+ G + +EF+ +E +I I +++ R + +W+D+ + + Sbjct: 468 GFEALVRWRHPERGLVGPNEFITFSESRGLITPIGRWVMHEACRQLKAWQDEGLAM-VPV 526 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++ + ++ + A++ T P +++ +ESV+M + L ++ +G+ Sbjct: 527 AVNLSALEFRQRDVAGELAAVLHATGLQPQFLEVELTESVLMHQTGQVLETLQAIKTLGV 586 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 + +DDFGT S L+YL P D +K + S +T + + +AI+ +II M ++++ I Sbjct: 587 GVAIDDFGTGYSSLAYLKRYPIDKLKIDRSFVTDTPQSTDDVAIVTAIIQMGRSLQLQTI 646 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 A+ + + L ++GCD IQ ++ P+ + L+ + Sbjct: 647 AEGVETPAQMDLLRQLGCDLIQGHAISPPMDAEAAHAWLQSHAAATR 693 >gi|228911140|ref|ZP_04074946.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] gi|228848503|gb|EEM93351.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] Length = 909 Score = 536 bits (1380), Expect = e-149, Method: Composition-based stats. Identities = 175/870 (20%), Positives = 352/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWIILSTGALSYFIGDIVVAYQRLIVKDFYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L + Y+ N L + ++ + A F +Y++ ++ I Sbjct: 107 YL------LFLVSFAFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHI 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 T + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + ++ + + + Sbjct: 221 IKYFTPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 +L I + + + + + +++ L+ + Q L Sbjct: 281 VTLILFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ I Sbjct: 401 --YYSLIYEEDLEEMINSFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKE-KI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR++F L + + VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G Sbjct: 575 VQKIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ Sbjct: 695 LLGDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT Sbjct: 754 DQLIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL N +K L++ Sbjct: 874 FLQKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|219668345|ref|YP_002458780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfitobacterium hafniense DCB-2] gi|219538605|gb|ACL20344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfitobacterium hafniense DCB-2] Length = 981 Score = 536 bits (1380), Expect = e-149, Method: Composition-based stats. Identities = 136/573 (23%), Positives = 277/573 (48%), Gaps = 10/573 (1%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q + + E Q L + + D +WDWD++RD +++LG + Sbjct: 411 QQFDELLSNQRQLKETQELQELVLEAAIDAIWDWDMIRDIRVYHSKNSSLLGYKGDEIR- 469 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + +W +H +D+ F+ L+ + + R ++R++ D ++ W+ + + + +G Sbjct: 470 SVEHWNALMHPDDKAEFQKKLNQHLFEKTARYSCDYRIKDKDGEYKWIRAFGKALYDQSG 529 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + R +G DIT+ K+ I A+ D LTG+PNR + + + + + + Sbjct: 530 NPYRMVGSHRDITDIKEKEMHIKYLAYHDFLTGLPNRAQIQEIIKSEILKA-EEQGTLLG 588 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ +DID +K IND G GD +L++++R + ++L ++ARL+G+ F I++ Sbjct: 589 VLFLDIDNFKAINDSFGHPTGDQLLITISRHLTQIL-DNHVVARLAGDEFLILIRDIQEK 647 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + D+A + K + + ++ ++ SIG + + +L NA+ AM+ AK Sbjct: 648 EQAIDYAERIMKLFETALVIYKQYCYISTSIGITFYPQDGESYESLLINADTAMHKAKEL 707 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + F + R ++ I+ +L A+E E L Y P + +++GLEALI+W+ Sbjct: 708 GKRNYVVFNMEMKRAVVEKAEIQNNLRKAIEFEEFVLHYQPQVEPHTGKVLGLEALIRWE 767 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 + I ++F+ +AEE +I I +++ + D + + +NI+++ L Sbjct: 768 -KEHKLIPPNKFIGVAEETGLIVPIGDWVVATACAFLKKLHDLGYRE-LTMSVNISARQL 825 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFG 864 ++ E + ++ PS+++L +E++++ + +L RL + I ++LDDFG Sbjct: 826 QEDRFVEKVLKVLRDNDLDPSKLELEITETMLIEFLDAKISNVLARLIENDIKISLDDFG 885 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 S L+Y+ +P T+K + S + T + I I+ MA + ++A+ + Sbjct: 886 LGYSSLNYIKQLPISTLKVDKSFIDDIQSTPESKNITGLIVIMAHQLGLKVVAEGVEKPE 945 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L + CD IQ + PL ++K+L + Sbjct: 946 QREYLIKYDCDAIQGYLASKPLPEEELIKVLNK 978 >gi|254228524|ref|ZP_04921949.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio sp. Ex25] gi|262392704|ref|YP_003284558.1| sensory box/GGDEF family protein [Vibrio sp. Ex25] gi|151938906|gb|EDN57739.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio sp. Ex25] gi|262336298|gb|ACY50093.1| sensory box/GGDEF family protein [Vibrio sp. Ex25] Length = 815 Score = 536 bits (1380), Expect = e-149, Method: Composition-based stats. Identities = 145/554 (26%), Positives = 259/554 (46%), Gaps = 13/554 (2%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + I G S + G L H + Sbjct: 267 QLSLASKIFNNSQEGMVITDRNANIIDVNTAFTQITGYRSEEVIGKNPRILRSGHHD--Q 324 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F L + + G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 325 GFYKQLWHQLETK-GQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR L L ++ + + +DID +K IND Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLLSLLEQHIETGHKNQQT-FATLFLDIDHFKHINDS 442 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F IIL ++ + + + + Sbjct: 443 MGHFCGDQLLSKLAIRLQDILHLNAHVARIGGDEFVIILPDVHSDVALLETVGDILSVFQ 502 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P +L + + V+ SIG A + S +LKNA+ AMY AK G N + Sbjct: 503 QPFDLANHDSLRVSTSIGIALYPRDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V I+ L A+E +L L + P L IVG+E L++W HP++G + ++F+ Sbjct: 563 KSVSHVRIQSALHQAIEKQQLRLEFQPQYNLEQHAIVGVETLLRWQHPEFGLVPPADFIP 622 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I++I ++L + +W +Q I +N+++ L + + + +++ Sbjct: 623 IAEKTGLIQSIGEWVLLHACQQGNAWLEQGVEFG-RIAVNVSALQLQQSNFIQRLSDILN 681 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + R+ L +ES ++ +P+++ L +LR++GI ++LDDFGT S LSYL +P + Sbjct: 682 QTGFPAQRLDLEITESFLLIDPQQAIASLNQLRELGIEISLDDFGTGYSSLSYLKGLPIN 741 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ S AI+ +II M K + ++A+ I + L GC Y Q Sbjct: 742 KLKIDRSFVSDVPSNSDSNAIVNAIIAMGKTLSLKVVAEGIETQEQADYLFEKGCVYGQG 801 Query: 938 SHVASPLGFNSILK 951 + P+ + + Sbjct: 802 YLFSRPVSAEKLFR 815 Score = 45.7 bits (107), Expect = 0.042, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 4/179 (2%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD-GERQSLAVLGS 414 A+ D + L +V + F V H Q + + Sbjct: 96 FAVLALTHPDDQITVVSAWLSALVGRMSFDVSSHYQQERTRHQTAATTPLPTLQEFIDCL 155 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D +W + T + + + G + + F + V Sbjct: 156 EDHIWIKGMDGLYSMTNRSVENAWQKTNSEIIGK--DDFALFSHERAEKFIEADNLVVAT 213 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + E R +N W+ P+ +++G+++ +G+ +IT ++K +E L A Sbjct: 214 GTLNIVEECRQIDENNNPTWLETIKSPVRDNDGNLIGILGMTRNIT-RRKMVETQLSLA 271 >gi|330808553|ref|YP_004353015.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376661|gb|AEA68011.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 858 Score = 536 bits (1380), Expect = e-149, Method: Composition-based stats. Identities = 141/627 (22%), Positives = 282/627 (44%), Gaps = 26/627 (4%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF----------SQG 399 + + + + + P L G L ++ +L + + + + Sbjct: 242 FSLVSRLERPGQQLLWSLVPPLGGALFILALLTAYFSRYALRTARHVDASYDSLEQSAHA 301 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + ER + D +W+ D + + T+ G + G L Y Sbjct: 302 LEASEERFRAVAEAASDWIWEIDGQQRITYLSGRFNTVTGFSDQQWLGQDIEQLLYC--- 358 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D L + R Q + + RP+ N +++ Y G A+DI Sbjct: 359 DTTPIALWLGKLTEEQNAS-NLRCSYRDHSGQLRFCRVSARPIYNKA-EVVGYRGTASDI 416 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++ + + + D LTG+PNR L L A + + T++++D+D +K I Sbjct: 417 TDEVAAHAQVQHLSMHDALTGLPNRNKLARHLDDAL--VAKEHSAPLTLLMVDLDNFKPI 474 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG GD VL+ + +R+ + + D++ARL G+ F ++L ++ +I F + Sbjct: 475 NDSLGHPAGDAVLLEVAQRLRDCTREQDLVARLGGDEFVVVLNGMEHTTEIDRFCERLID 534 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697 S+ PI + + ASIG A E+++ A++A+Y AK G F ++ Sbjct: 535 SLQQPILYETHSLHIGASIGIAVSRRQGYVPGELIRCADIALYQAKSEGKKTWCYFASQM 594 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + R ++ DL AV+ +E L + P + EIV +EAL++W HP G +S F Sbjct: 595 NDQIQHRRQLESDLRQAVKKNEFVLHFQPRYTVDGREIVAVEALVRWQHPTQGLLSPDAF 654 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+ +I ++ ++L ++W + + + +N++ +++ E ++ + Sbjct: 655 IPLAEQTDLIVPLSQWVLREACETALTWPGE-----LMVSVNLSPAQFERSDVVEDVRQV 709 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T + SR++L +E+V++ + + + ++ L+++G+ L +DDFGT S L YL P Sbjct: 710 LIETRFPASRLELEITENVMLNDVDGALQVMNALKELGVRLNMDDFGTGYSSLGYLRTYP 769 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 FD +K + + + A++++II + K + T+ A+ + + + L C + Sbjct: 770 FDGIKIDKRFIASMSNSSNDRAVVQAIINLGKAMGLTVTAEGVETQAQLGSLGSDQCHEV 829 Query: 936 QDSHVASPLGFNSILKLLKERFPLVKN 962 Q ++ P+ + LL PL K Sbjct: 830 QGYFLSRPIDKQAFAHLLASGLPLPKT 856 >gi|46202314|ref|ZP_00053429.2| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1] Length = 723 Score = 535 bits (1379), Expect = e-149, Method: Composition-based stats. Identities = 169/708 (23%), Positives = 290/708 (40%), Gaps = 45/708 (6%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343 I G A IA + + P+ + A++ +++ ++ Sbjct: 29 RIESVGWAVIATMPTSVAFAPIQRLTFEIYKDAALASLIIAILLWLFVRRQ--------- 79 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + L + N + P V G I L+ H + Q + + Sbjct: 80 LAPLEHSAEMLNAMASG---NRPLSPLPVEGGPEIRQLLDSFNKFHDRISSQ-KQSLRDN 135 Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ LA G+ + + D V+ + G + G + H Sbjct: 136 AEQLVLAASVFDGTSEAIAITDAEGLIVSVNKPFCRLTGYDLEELVGQNPKILKSGRH-- 193 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D + + S V G E R + + + + I + + G + R + IA+DI Sbjct: 194 DAAFYAEMWQSIVT--SGNWSGEVWNRRKNGEIYPERLTISTIYDGEGQVQRRVAIASDI 251 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T QKK+ E I A D LTG+PNRQ FLD L L + + V+++D+D++K+I Sbjct: 252 TTQKKAEEIIWHQANHDLLTGLPNRQRFLDLLRKDLARADGLPDRVVGVLLVDLDRFKEI 311 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ + RRI L D++ L + F + ++ + ++ +I A+R Sbjct: 312 NDTLGHAIGDQLLLEVVRRIRSCLSETDVVGHLGADEFIVSMVDDLSTARIEATVAAIRM 371 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +IA P + + +TASIG ++ + E+L+N + A+ AK G + F S Sbjct: 372 AIAEPFHSGSDTVHLTASIGITAYPTDGGDIEELLRNVDQAVREAKDGGRDRSCCFTESM 431 Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + DL A+ + + Y PII + IV EAL++W HP+ G +S + F Sbjct: 432 REAGQTRLQLANDLREALVAGQFEVYYQPIIDMPSRTIVKAEALLRWRHPERGFVSPALF 491 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-----------------IFILINI 800 + IAEE +I I ++ + A D+ I +N Sbjct: 492 IPIAEETGLISDIGNWVFRQAAATARRLCDRCPYVNGGICRKAEMAGPNAPCLFQIAVNK 551 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + + + SP I + +E +++G L + R G+ + L Sbjct: 552 SPRQFFSGFSHLEWAEHLRQLNISPQCISIEVTEGLLLGQHADVMERLSKFRAAGMQIAL 611 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S +SYL D +K + S + T+ AI +II MA + ++A+ I Sbjct: 612 DDFGTGYSAMSYLKRFDIDYIKIDQSFVRDMTDDSSDRAIAEAIIVMAHRLGMKVVAEGI 671 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLVKNT 963 E L GCD+ Q A P+ + +L L E L + + Sbjct: 672 ETEEQYALLAAAGCDFGQGYLFARPMPVDQFEQLVGRLDEPAALPQRS 719 >gi|312958311|ref|ZP_07772832.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] gi|311287375|gb|EFQ65935.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] Length = 637 Score = 535 bits (1379), Expect = e-149, Method: Composition-based stats. Identities = 157/629 (24%), Positives = 276/629 (43%), Gaps = 19/629 (3%) Query: 334 YERAVLLIPAWILI-FIWFIGLWMAITKRLDN----DIIQPALVGGLVLIVILIGFTVIQ 388 Y RA+ ++L+ W A+ + LD+ ++ V ++ + + Sbjct: 5 YRRALGTGLVYLLVSIAWIGLTEHALIEFLDDPSRLNLWLQVRGYVWVTFSAVLIYLMGA 64 Query: 389 HVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 Q + ER A + + V D V I G + Sbjct: 65 RFAQGHPLPQSHHDNRERLRQAAAVFDCTREGVLVTDAQGLIVHVNRAFMEITGYQREDV 124 Query: 446 HGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G + H + ++ + + R G E R + + IR + + Sbjct: 125 MGRQPSLFKSGRHSS--SFYQQMFQTL--ERIGEWSGEIWNRRKSGEIYPQWQTIRVIHD 180 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G + +Y+ + +DI+ K S + A D LT +PNR F DR L + Sbjct: 181 DHGKVSQYVAVFSDISAIKDSEHELAHLAHHDPLTDLPNRLLFTDRAEQALASAQLHKRG 240 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 ++++D+D +K IND LG VGD +L R+ LL LARL G+ F +I S Sbjct: 241 -CALLLLDLDHFKIINDSLGHNVGDQLLKLAGERLKGLLGPGVTLARLGGDEFAVIAESC 299 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ A A M + P ++ V+ASIG + + S +++ ++L+NA+ A++ A Sbjct: 300 PQVVQAAALAQRMLDVMKQPFIFDGHQLFVSASIGISLFPSDALSAEQLLRNADSALFKA 359 Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G + + +RV I +L A+ EL + Y P+ L ++G+EAL+ Sbjct: 360 KSVGREGYALYTEELTAHAQNRVEIASELRRALVQHELRVYYQPVYALHSGRLIGVEALV 419 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G + +EF+ IAE +I I+ +++++ R + W FI +N++S Sbjct: 420 RWQHPERGLVPPAEFIPIAERTGLIADIDAWVMDQACRQMCQWLAAGVPLS-FIAVNVSS 478 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + EL + ++ T P+ ++L +ES VM +PE + L LR++G+ L +DD Sbjct: 479 RLFARRELYGQVAQVLRDTGLDPAFLELEVTESAVMDDPEVALEQLHHLRELGLRLAIDD 538 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L L +P +K + + G E +AI+R +I +AK++ + A+ I Sbjct: 539 FGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDVAIVRVVIALAKSMGMQVHAEGIEQ 598 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + L CD Q P+ N I Sbjct: 599 VEQARFLLEQDCDMGQGYWFGRPVPANEI 627 >gi|330810802|ref|YP_004355264.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378910|gb|AEA70260.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1092 Score = 535 bits (1379), Expect = e-149, Method: Composition-based stats. Identities = 144/586 (24%), Positives = 273/586 (46%), Gaps = 26/586 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 T ++ + + + E+ + A S D + ++ R + + G + Sbjct: 516 VTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAITITELESGRYLEVNDGFCRLTGYRA 575 Query: 443 GSMHGP----IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G + W + R L + + + + E R + + + Sbjct: 576 DEVIGHTVYEVGIWAE-------EKQRAALLAELHLKGRVVHQEMLGRNKRGEILTVEVS 628 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + P++ + + A D++ + + I A+ D LT +PNR +DRL+ + L Sbjct: 629 VEPITL--NETACLLLTARDVSLLRNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 686 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F Sbjct: 687 KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFV 745 Query: 619 IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++L S ++ A +R+ ++ P+ L + + VT SIG A T +++ Sbjct: 746 VLLSGLEGSRNEVSKQVRTLADTLRELLSEPMFLDGQRLQVTPSIGIALIPDHGSTPTDL 805 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 LK A++A+Y AK G N + F + S+R+ ++ DL LA+ E + + P + Sbjct: 806 LKRADIALYRAKDSGRNTSQMFHTTMQKAASERLRMETDLRLALARGEFSVHFQPQVDAR 865 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 D I+G EAL++W HP+ G S +EF+ + E+ +I + ++L+ + + Sbjct: 866 DNRIIGAEALVRWHHPELGAQSPNEFIKVLEDSGLILEVGTWILDEACDGFKQLIAKGKI 925 Query: 792 PP--IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P + +NI+ + ++ E ++ + S +KL +E +V+ N + + + Sbjct: 926 DPQQFSLCVNISPRQFRQSDFVERIENSLVTHGLPFSLLKLEITEGIVIQNLDDTIAKMR 985 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907 RL+K+G+S +DDFGT S L+YL +P DT+K + S + S I+R+I+ MA+ Sbjct: 986 RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVRDATSDPNDAEIIRAIVAMAR 1045 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ +IA+ + + L +GC Q + PL + +LL Sbjct: 1046 SLNLIMIAEGVETLEQLHFLQGLGCHLYQGYLHSRPLPLEAFERLL 1091 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 3/150 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + Q + ER LA+ + WDW I + + A + GL Sbjct: 262 LSTFLDTTEQKLAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLEPK 321 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 H + + +R+N R S G Q +RV+ D ++ R R Sbjct: 322 PFHESFDAFFEGVPTEERNNMRNAYRSLREGPAGNYQLTYRVQLPDGSSRYLESRARLYR 381 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNA 533 N +G LR G DIT+Q +E A Sbjct: 382 NDDGSPLRMAGTLLDITDQ---VEREQSLA 408 Score = 99.3 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 1/131 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + A+ G+ W WDI +++ + + G ++L + Sbjct: 22 SEQSWDSAPQLLAALNGARLGAWSWDIETGKISWSRGTQALFGFDPRQPLPADVDYLDLL 81 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR + V R+ D HW+ I + + +G R IG+ Sbjct: 82 LPEDRARAVRAFHAAVAGAPLEQAMHHRIVWPDGSLHWLEISGSVLPDKHGRP-RMIGVI 140 Query: 517 NDITEQKKSLE 527 +IT Q++ + Sbjct: 141 REITHQREREQ 151 Score = 39.5 bits (91), Expect = 2.6, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + Q + + E+ + S D + R + G + Sbjct: 391 AGTLLDITDQVEREQSLAASEEKFATLFQVSPDPICVTHQDSGRFLEINSSFTQTFGWTA 450 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + + D + L + V + Q +I R Sbjct: 451 SDVIGLDADEIGL-----WDASGSSLQRIERVIREQSLSNVAIVVHHKNGQPLTCVISSR 505 Query: 501 PMSNSNGDILRYIGIANDITEQKK------SLEGILCNAFQ---DNLT 539 + + G+ + DIT+Q++ + E AF D +T Sbjct: 506 QI--NVGNQPCIVTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAIT 551 >gi|83646582|ref|YP_435017.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396] gi|83634625|gb|ABC30592.1| FOG: EAL domain [Hahella chejuensis KCTC 2396] Length = 913 Score = 535 bits (1379), Expect = e-149, Method: Composition-based stats. Identities = 144/560 (25%), Positives = 267/560 (47%), Gaps = 14/560 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIND 460 + ++ ++ + V D R+ V I G ++G R H D Sbjct: 339 KELQQAAVVFDAIREAVIITDDARNIVAVNNAFTDITGYTLDDVYGRNPRLQQSGRH--D 396 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + +R++ S + G Q E + + + + I + + NG++ Y+ + +DI+ Sbjct: 397 KTFYRSLWRSITEH--GHWQGEIENKRRNGEIYPAWQNINVVYDKNGNVANYVSVFSDIS 454 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 K+ + + A D+LTG+PNR F + L L+ + + +M ID+D++K IN Sbjct: 455 VIKEKEKQLRHLANHDSLTGLPNRLLFFNSLENSLERARRR-RMEVALMFIDLDRFKIIN 513 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D +G GD +L ++ RR+ E ++ D++ARL G+ F I L +N+ A A + ++ Sbjct: 514 DTMGHEAGDILLKTVARRLLEAVRGEDMVARLGGDEFTISLEELSNTEDAAAKAGKLIET 573 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698 I P+++ EI +ASIG A + + + + A+ AMY AK N E + Sbjct: 574 IRQPVHIGGHEIVCSASIGIAIFPHDADNAQNLARAADAAMYRAKELHRNTFEFYTSELT 633 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + + ++ A+E +E L Y P L +VG E L++W HP G I+ F+ Sbjct: 634 ERAIEHLTLSSEMRQALERNEFELYYQPQFNLTSGRLVGAETLLRWRHPTRGLITPYCFI 693 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAE+ +I I +++ ++ RD+ W P I N++SK L ++ ++ + Sbjct: 694 NIAEDSALIDPIGGWVINQLCRDVAGWLKGGLKLP-RIAFNVSSKQLEHYDVKGRIEHAL 752 Query: 819 SKTLYSPS--RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + PS ++L +E + + ERS +L ++R +G+S+ +DDFGT S LS L ++ Sbjct: 753 QRWGLEPSDLDLELEVTEGAL-QHEERSVEVLRQVRLLGLSVAIDDFGTGYSSLSRLKHM 811 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P DT+K + + A+ II + + + ++A+ + ++ L CD Sbjct: 812 PIDTLKIDRMFIRDLPDDPNNQALASGIILLGRALGLKVVAEGVENVEQLRFLQERNCDE 871 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q ++ PL + K+LK Sbjct: 872 AQGFLLSKPLPKAAFEKMLK 891 Score = 114 bits (285), Expect = 9e-23, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 7/179 (3%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 +Q A++ L+ V+LIG V + A ++ + A + W WD+ R+ Sbjct: 53 LQSAMLYILIACVVLIGGVVAWVLTANEARNKALRESRNNLDKAQQIARLGNWVWDLKRN 112 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 V + + LGL+ +L +H +DR ++D + ++ E RV Sbjct: 113 EVYWSDQVYRNLGLSLHDNKASYEKFLECVHPDDRARIVKLVDEALENKQV-YGIEHRVI 171 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF--QDNLTGIPN 543 D + + + + G+ ++ G DITE+K+ A D + N Sbjct: 172 WPDGEERIVCGAGEVIFDVQGNPVQMHGTIQDITERKRDENRKNEYAHLIYD----LYN 226 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 2/112 (1%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D V LG + + G + + + + L Sbjct: 236 DPRGVIVDINETALRWLGYSRSELVGKVM-FCDLLSEDCVQLCWDKLGQLKKGGALS-NL 293 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 E +R D + +++ + + +G+ I D TE+++ + + A Sbjct: 294 ELNIRCKDGRLFCVLLTSTALQSEDGEFRGSRCILVDYTERRRHEKELQQAA 345 >gi|229082515|ref|ZP_04214978.1| Sensory box/GGDEF [Bacillus cereus Rock4-2] gi|228700947|gb|EEL53470.1| Sensory box/GGDEF [Bacillus cereus Rock4-2] Length = 909 Score = 535 bits (1379), Expect = e-149, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 52 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L+ + Q L T Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|114561776|ref|YP_749289.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114333069|gb|ABI70451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 1144 Score = 535 bits (1379), Expect = e-149, Method: Composition-based stats. Identities = 148/555 (26%), Positives = 262/555 (47%), Gaps = 11/555 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFR 465 S A+ S + +I I G A+ + G + L + + ++ Sbjct: 582 LSQAIEQSPISMILTNIDSKIEYVNSAFEKISGYAASEVIGQSASMLKSGLTP--KSLYK 639 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + D+ Q E + R + W I P+ ++ G Y+ + D+T+ K+ Sbjct: 640 QLWDAISTG--HAWQGELQNRKKNGDIFWEHAHIAPIFDNAGVTKHYLALKQDVTQYKQQ 697 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E IL A D+LTG+PNR LDRL+ +L + N V+ +D+D +KK+ND +G Sbjct: 698 EEKILHQAHYDSLTGLPNRLLSLDRLSQMLKDAHRAKN-NVAVLFLDLDDFKKVNDTMGH 756 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +VGD++L+ R+ ++ D++ RL G+ F IIL + N +++ A + + P Sbjct: 757 SVGDELLIQAAVRLKNTIRESDVVGRLGGDEFIIILSNINEPIEVEIIASKLLEQFYQPF 816 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 L RE+ T SIG A + E+L+ A+ AMYH+K RG N + Sbjct: 817 RLENRELVSTISIGIALYPLDSEDPKELLRQADSAMYHSKDRGRNTYNFYTHQMNHDMDR 876 Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + +E L A++ E + + P + + +I+G EAL++W++ G ++ EF+ IAE+ Sbjct: 877 RLKIEEQLRSALKQKEFEVYFQPFVDIKSRKIIGAEALLRWNNALLGQVTPDEFIPIAEQ 936 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I +I +++E W+ Q P I IN++ K +N + + + K Sbjct: 937 TGLIVSIGQYVIEVAFATAKKWQ-QTYNPYFKIAINVSPKQFRENTFVDMLNIQLDKHQI 995 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 S I+L +E V++ + L + IG+S+++DDFGT S LSYL PF+T+K Sbjct: 996 HASTIELEITEGVLLSSDAVIDSNLISINDIGVSISMDDFGTGYSSLSYLRSYPFNTLKV 1055 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + + ++ + I M + T++A+ + E L + CDY Q + Sbjct: 1056 DKSFINDITVDPGDLELVGAAIAMGHGLNLTVVAEGVETEEQYHLLNALKCDYGQGYLFS 1115 Query: 942 SPLGFNSILKLLKER 956 PL + LL ++ Sbjct: 1116 KPLPQAAFEALLLKQ 1130 Score = 64.6 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 35/274 (12%), Positives = 79/274 (28%), Gaps = 20/274 (7%) Query: 272 YLHWNRWHAKVGYITFSGIACIAI---LFCMSFYYPMVTASIARITLASIVLYYTYFIIY 328 + + + F I + C Y + + + + + Sbjct: 62 FFDTRWVLLSLSGLFFGFIPTLIATILAACFRLYQGGAGLYVGTLIIFISSAIGLGWRYW 121 Query: 329 HGMKGYERAVLLIPAW-----ILIFIWFIGLWMAITKRLDNDIIQPALVG---GLVLIVI 380 + + A I + + + + +A + I G +LI + Sbjct: 122 MKSANKQPNWQNLLAMGFVVEIGVLLCLLLMPVADKYDIILTISPTLFTVYTCGTMLIGL 181 Query: 381 LIGFTVIQHVLATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 L+ + ++ + ++ + G DI++ + + L Sbjct: 182 LLKQHQQRQQISQELHHHKNLLETEKNLLQSIIDGIPDIIFYKSADGVYLGCNKAFSEAL 241 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L + L DR + + D FV E + D H Sbjct: 242 KLNPEDIKHKTDYDLF-----DRQQADSFIKADRFVLQENQPWMDEEWITTPDGIAHIFK 296 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 P +S+GDI +G++ D+ ++K E + Sbjct: 297 THKTPFVDSSGDIQGIVGVSRDMADRKLIEEQLR 330 Score = 58.8 bits (141), Expect = 5e-06, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 75/233 (32%), Gaps = 34/233 (14%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGL 440 + F I+ + Q + + I +D R + + G Sbjct: 433 MFFCFIKDISQRINAEQKLLLSESKFRHIFENIPSISVQGYDKNRSVIFWNQASEKLYGY 492 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G L I R++ +++++ L E ++ AD + Sbjct: 493 TKEQALGKKLEDL-IIPPPYREHVINNVNAWINEGVPILAEELLLQRADGSNVAVYSSHT 551 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 ++N++ + Y I D++ QKK+ E LT L+ ++ S Sbjct: 552 LINNTDNEAEMY-CIDIDLSAQKKAEEQ--------ALT-----------LSQAIEQS-- 589 Query: 561 DDNLRPTVMVIDID-KYKKINDVL----GIAVGDDVLVSLTRRIGELLKFPDI 608 ++++ +ID K + +N G A +V+ + L + Sbjct: 590 ----PISMILTNIDSKIEYVNSAFEKISGYAAS-EVIGQSASMLKSGLTPKSL 637 Score = 41.5 bits (96), Expect = 0.81, Method: Composition-based stats. Identities = 8/145 (5%), Positives = 35/145 (24%), Gaps = 7/145 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + + + + + D + + + A + G Sbjct: 313 VGVSRDMADRKLIEEQLRRSESTYRNIISTAQDGFVIVSVDGKIIESNQSFADMTGYTLD 372 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + + + + + + + + + I Sbjct: 373 ELFNKPIGDIET--SENHQFSTQNIITAKQVKAIHYTSQH--KHKLGYLFHVEVNISFWD 428 Query: 504 NSNGDILRYIGIANDITEQKKSLEG 528 +G + DI+++ + + Sbjct: 429 GDDG---MFFCFIKDISQRINAEQK 450 >gi|71906691|ref|YP_284278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846312|gb|AAZ45808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 585 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 139/561 (24%), Positives = 258/561 (45%), Gaps = 14/561 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + + ++ + R P + + G ++ + + L I Sbjct: 27 AMTEQETMFRSTMEAAQVGIFV--LQNQRFKYVNPFLVGMFGYSAEELLEQM-GPLDLIL 83 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + G YE D +++ P + G + +G Sbjct: 84 PEQHAFVIEQMQLRAAGVLGH-NYELTGLRKDGSTLPIMVLGSP--SVIGGLPASVGTVL 140 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI+ QK + + I A D LTG+PNR+ +R +L + + V+ +D+D +K Sbjct: 141 DISAQKAAEQRIRELADYDVLTGLPNRRLLRERFEQLLAAAER-EKSEIAVIFLDLDHFK 199 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 ++ND LG +VGD++L + RR+ +++ D LARL G+ F + + + + A + Sbjct: 200 RVNDSLGHSVGDELLCEVARRLDSVVRRIDTLARLGGDEFIFAMPGFHTAAAVE-VARRL 258 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + + P + E+TVT S+G + + +L+NA+ AMY AK G N + + Sbjct: 259 VEVFSRPFEVAGHELTVTPSLGISIYPHDGRDLETLLRNADTAMYRAKEMGRNAFQFYSS 318 Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + DR++++ +L A+ +E L Y P++ L I+G+EALI+W HP+ G I Sbjct: 319 EMNTTTLDRLLMESNLRRALVQNEFILHYQPLVNLETGLIIGVEALIRWLHPELGLIMPD 378 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I I ++L R +W D PPI + +N+A E + Sbjct: 379 RFIHVAEETGLINPIGDWVLCEACRQAKAWCDAGL-PPICMAVNVAPVQFRQAGFVEMVA 437 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ + SR++L +E VM + + + L L ++G+ L+LDDFGT S L+YL Sbjct: 438 GALATSGLDASRLELELTERTVMHDADINMGTLSALHRMGVELSLDDFGTGYSSLAYLKR 497 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +K + S + AI +I+ M +++ T++A+ + + L +MGCD Sbjct: 498 FPVGKLKIDRSFVNDLETDPDDWAIASTIVSMGRSLRMTVLAEGVEKVEQLALLRKMGCD 557 Query: 934 YIQDSHVASPLGFNSILKLLK 954 Q + + P+ + + +L+ Sbjct: 558 MAQGYYFSRPMSADGMADMLR 578 >gi|294013319|ref|YP_003546779.1| putative diguanylate cyclase/phosphodiesterase [Sphingobium japonicum UT26S] gi|292676649|dbj|BAI98167.1| putative diguanylate cyclase/phosphodiesterase [Sphingobium japonicum UT26S] Length = 765 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 164/756 (21%), Positives = 312/756 (41%), Gaps = 37/756 (4%) Query: 226 WVVLGYISIDFG--FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283 +L FG FL ++ + + + LS ++ L R + Sbjct: 26 VALLRQAMNLFGLLFLWQVFGHHGSAPGLMLWSAALLLSMAVGGILR-----RRRNGAAV 80 Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343 + L + + + A A V ++T A + A Sbjct: 81 SAADLRVHGFTGLLHGLIWAACMMSLSAGHGAAQSVAHWTLISCIMVCGAISYAPTPLAA 140 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + +GL R ++ A L L+V + + S + Sbjct: 141 TGFLLPCIVGLGALFDPRDQAPLLALATSYALSLLVGCFLYA--RTFARQHSASVQLEEK 198 Query: 404 GERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-------NW 452 E SL + G+ D +W D R +P +A +LG A G + W Sbjct: 199 SEVVSLLLREYEHGASDWLWQTDPARRLSGVSPRLAEMLGRAPAEAEGVLLVELLAGNAW 258 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + + L + L E D + W + P + G L + Sbjct: 259 ESGLFPTELHELADHLKRRESFSNIVLPVEL-----DGKVRWWELSASPRYDEGGAFLGF 313 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT--VMV 570 G+ +DITEQ++S E I A D LTG+PNR D L + ++ Sbjct: 314 RGVGSDITEQRESAERIAQLARFDPLTGLPNRTHLRDVLDQAMGGGMAGAARAGGCAFLM 373 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D++K +ND LG +GD +L + RR+ + + R+ G+ F +++ + + Sbjct: 374 IDLDRFKAVNDTLGHQIGDKLLTQVARRLRHICSGAEFCGRIGGDEFAVVIPQLGETHGV 433 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + ++ P + E + V AS+G A S ++++A+LA+Y AK GG Sbjct: 434 DKLAARIINGLSAPYQVEEHTLYVGASVGSAVSPQDGRESEALIRSADLALYRAKGDGGG 493 Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 ++ + +R ++ L A+E +L++++ P++ +VG EAL++W HP Sbjct: 494 VHCAYEPQLHAQAEERRQLELALRDALEKKQLHVLFQPVVEAQAGTVVGFEALVRWTHPD 553 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G IS ++F+ +AEE +I I ++L ++ W + + I +N++++ L Sbjct: 554 MGPISPAKFIPVAEEARLIGPIGEWVLRTACKEAACWPE-----DVRIAVNVSAEQLAHP 608 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + ++++ R++L +ESV + + +L +LR +G+ L+LDDFGT S Sbjct: 609 SFVGAVVSALAQSGLEARRLELEVTESVFVNADTGALKILDQLRGLGVRLSLDDFGTGYS 668 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIK 925 L YL FDT+K + S + G++ + AI+R+++ +A ++ A+ + E ++ Sbjct: 669 SLGYLSRTRFDTIKIDRSFVVGASNNKAESLAIIRAVVTLADSLGMATTAEGVETEAELA 728 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + +GC +Q + P+ + L + Sbjct: 729 MVRGLGCRKVQGFYFGRPMPASDAAALFPAHQARAR 764 >gi|307822699|ref|ZP_07652930.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307736303|gb|EFO07149.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 982 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 153/769 (19%), Positives = 294/769 (38%), Gaps = 19/769 (2%) Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263 +FL + + R + + + L LS Sbjct: 220 MFLFVTWAAVRMGPHALVIILVMAATQGLFGAQQGTGFFAEDIAKTYLTSYWSFMAILSV 279 Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 + + ++ R + + I + I ++ + ++ Sbjct: 280 TGMTLATYFVARRRAEQTL-TASEGYQRAIFNATPDAMLISDKRGIITQVNRQAELMLGY 338 Query: 324 YFI--IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381 + ++ L + + + + + Sbjct: 339 KLGELVGQSIEVLVPEGFRPNHPELHAKYVAAPVARPLGVGRTVQARRKDGSSFDVDISV 398 Query: 382 IGFTVIQHVLATGYFSQGIF--SDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATI 437 Q + +A + S + + D + Sbjct: 399 SPIKTEQGLFFASALRDVTLRKQADAHLRVAAIAFESNEPMVITDADNIILQVNRAFTES 458 Query: 438 LGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G + G + L H F + + G Q E R + + + Sbjct: 459 TGYSKEEAVGQKISLLKSGRH---GAAFYAAMWETIK-STGTWQGEIWDRRKNGEIYPKW 514 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + I + +G I Y+G DITE+K + E I AF D LT +PNR+ +RL +D Sbjct: 515 LIISVVKGDDGAITHYVGTHIDITERKAAEEQIKQLAFFDPLTQLPNRRLLQERLKHGID 574 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + D + ++++D+D++K +ND LG GD++L + RI L+ D++ARL G+ Sbjct: 575 VERRDGK-QLALLMLDLDRFKSVNDSLGHLAGDELLQQVAARITARLRDVDMVARLGGDE 633 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLK 675 F ++L + A A + ++ P + +I ++ASIG + + + ++ Sbjct: 634 FIVLLEDIAHPEDAARVAEEIIADLSKPFWVEQGEDIQISASIGISLYPQHGDNPALLMD 693 Query: 676 NAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+ A+Y AK G F +R+ ++ L A+E +L + Y P + ++ Sbjct: 694 NADAALYQAKDAGRGCFAYFSEDLTLAARERIALESRLRRAIEQQDLRVFYQPQVDIISG 753 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I+G EAL++W G I F+ IAEE +I I ++L R W D P Sbjct: 754 RIIGAEALVRWQDSVEGLIPPIRFIPIAEETGLILVIGEWVLRETCRQGRQWLDAGL-LP 812 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++ +++C+ + ++S T + S+++L +ES +M N + +L LR Sbjct: 813 LTLAVNVSPHQFRRSDICDLVATVLSDTGFPASQLELEITESGLMDNQGNATEILNCLRG 872 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIET 911 GI L +DDFGT S L+ L + P D +K + S + + + I +II M + Sbjct: 873 QGIRLAIDDFGTGYSSLACLKHFPLDLLKIDKSFIDDIPHLQDDMEIASTIIAMGHILGF 932 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++A+ + + L GCD Q + P+ ++LL+ + LV Sbjct: 933 KVLAEGVETPEQLMFLQEKGCDMYQGYIKSCPVPAEEFVELLRNQQRLV 981 >gi|95929074|ref|ZP_01311819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95134975|gb|EAT16629.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 920 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 142/593 (23%), Positives = 289/593 (48%), Gaps = 14/593 (2%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG--ERQSLAVLGSGDIVWDWDIV 424 + + I++++ + Q + Y+ Q + +R + D+V D Sbjct: 331 VTAIMFLAAASIMMMLWWRRQQALYQASYYQQQLQHQMLSQRFDNLTRFANDLVLLVDAQ 390 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + G + L + + D F L +++E Sbjct: 391 GQIIDANERALDTYGYPEDELKTFKLKDLCDLSQQECDLFWEQLKV-----EQGVRFETM 445 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 D + I R + G +++ I DI+E+K + + ++ A+ D LTG+PNR Sbjct: 446 QFRQDGSTFPVEINARWIDLDRGHLVQ--AIIRDISERKAAEDQLVHQAYHDPLTGLPNR 503 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 DRL + + + ++++D+D++K IND LG AVGD +L +L +R+ E L+ Sbjct: 504 LLISDRLKLAIAKARRH-KTQAVLLLLDLDRFKNINDTLGHAVGDRILTTLAQRMQETLR 562 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D +AR G+ F ++L + A + ++ P+ + E+ +T S+G + Sbjct: 563 DTDTVARFGGDEFLVLLEDIRELSDVVSLAQKLSDLVSQPVLIDGEEMCLTTSVGISVAP 622 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722 I ++++ A+ AMY AK +G N+ + + R+ ++ +L A++ E+ + Sbjct: 623 EDSIEVDQLIRFADTAMYRAKEKGRNNFQFYTPDMNAHAGRRLQLENNLRKALQRQEMVV 682 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P + + I+G EAL++W HP+ G IS ++F+ +AEE +I+ I + LE+ + Sbjct: 683 YYQPQVEMDSGRIIGSEALLRWMHPEHGLISPNDFIPLAEETGVIEEIGAWALEQACQQT 742 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 ++W+ N P + I +N++++ + L + ++ +++KT + +++ +ES++M + + Sbjct: 743 VAWQK--NHPELKIAVNLSARQFRNENLVDDIEQILNKTGLAARHLEMELTESLLMEDVD 800 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSI 902 + L+ RL K+GI+L +DDFGT S LS+L P D +K + S + + I R+I Sbjct: 801 VAIDLMNRLTKLGITLAIDDFGTGYSSLSHLNRFPIDKLKIDRSFVNSMSLDNNGIARTI 860 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I + + + +IIA+ + + L ++GC Q + + P+ N+ ++L++ Sbjct: 861 ITLGRTLGLSIIAEGVENNEQRQLLLQLGCPQAQGYYFSRPVHDNAFSEMLEK 913 >gi|229591627|ref|YP_002873746.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas fluorescens SBW25] gi|229363493|emb|CAY50722.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25] Length = 1100 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 147/586 (25%), Positives = 270/586 (46%), Gaps = 26/586 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 T ++ + + + E+ + A S D + + R V + G + Sbjct: 518 VTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAISITERDTGRYVEVNDGFCRLTGYRA 577 Query: 443 GSMHG----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G I W +N R+ L + + + E + + Sbjct: 578 EEAIGLTLYQIGIWAD-------ENQRSALLAELQIKGRIHHLEMLWHNKRGDLLAVEVS 630 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + P++ + + A D++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 631 VEPITL--NETPCLLLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 688 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F Sbjct: 689 KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFV 747 Query: 619 IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++L + S ++ + A +R+ ++ P+ L + VT SIG A T +++ Sbjct: 748 VLLSGLDGSRMEVSAQVQELADTLRELLSEPMFLDGHRLQVTPSIGVALIPDHGSTPADL 807 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 LK A++A+Y AK G N + F S S+R+ ++ DL LA+ E + Y P + Sbjct: 808 LKRADIALYRAKDSGRNTTQMFHNSMQKTASERLRMETDLRLALSRGEFSVHYQPQVDAR 867 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 +IVG EAL++W HP+ G S +EF+ + E+ +I + ++L+ + + Sbjct: 868 GNKIVGAEALVRWQHPQLGAQSPAEFIKVLEDSGLILEVGTWILDEACAAFQQLIAEGLV 927 Query: 792 PPIFIL--INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P+ +NI+ + N+ E ++ + + S +KL +E +V+ N + + + Sbjct: 928 DPLNFSLCVNISPRQFRQNDFVERVERSLKQHQLPFSLLKLEITEGIVIQNLDDTISKMR 987 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 RL+K+G+S +DDFGT S L+YL +P D +K + S + + I+R+I+ MA+ Sbjct: 988 RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDATHDPNDAEIIRAIVAMAR 1047 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ +IA+ + + + L +GC Q + PL + L Sbjct: 1048 SLNLEVIAEGVETQEQLAFLQGLGCHLYQGYLHSRPLPMLGFRERL 1093 Score = 111 bits (277), Expect = 8e-22, Method: Composition-based stats. Identities = 73/471 (15%), Positives = 142/471 (30%), Gaps = 62/471 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + Q + ER LA+ + WDW I + + A + GL Sbjct: 264 LSTFLDTTERKNAEQALKDSQERLDLALDSAQLGTWDWHIPTGMLYGSARAAQLHGLPPE 323 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 H + + +R+N R + G Q +RV D ++ R R Sbjct: 324 PFHESFDAFFEGMPGEERENMRNAYRTLREGPAGNYQLTYRVPMEDGSSRYLESRARLYR 383 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ G LR G DIT+Q + + LT + ++ ++ S Sbjct: 384 DAQGAPLRMAGTLLDITDQVEREQR---------LT------ASEEKFASLFQASPD--- 425 Query: 564 LRPTVMVIDIDKYKKIN----DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 V +D + +IN G +V+ +IG + L R+ Sbjct: 426 -PICVTCLDGGAFIEINPAFTQTFGWTAA-EVIDKSAEQIGLWDESSKRLERIE-----R 478 Query: 620 ILISENNSLKIADFAIAMRKSIAMPIN-----LLEREITVTA---SIGFASWTSSKITSS 671 ++ + + +S+ I+ + ++ VT ++ S Sbjct: 479 VIREQTLNNVAIMVHHKNGQSLTCVISSRLIKVGDQPCIVTTLRDITQQQRSEAALKASE 538 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 E A + A + + R+ A E L L I Sbjct: 539 EKFAKAFHSSPDAISITERDTGRYVEVNDGFCRLTG----YRAEEAIGLTLYQIGIWADE 594 Query: 732 D------------EEIVGLEALIQWDHPKWGNISSSEFMLIAEELC--MIKAINLFMLER 777 + I LE L + S + E ++ A ++ +L+ Sbjct: 595 NQRSALLAELQIKGRIHHLEMLWHNKRGDLLAVEVSVEPITLNETPCLLLTARDVSLLKN 654 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I + N+ ++ LL + L + + AL+ + + + Sbjct: 655 AQAQIRHLAYHDPLT------NLPNRALLMDRLSQQI-ALLKRHNLRGALL 698 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 13/156 (8%) Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W W+I R++ + + G ++L + DR + + Sbjct: 46 WCWEIDTGRISWSRGTQALFGFDPRQPLPKDLDYLDLLAPQDRGRVIRAFHAVLAGEPFE 105 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK------SLEGILCN 532 ++ D HW+ I + G R IG+ + T Q++ E Sbjct: 106 QAMHHHIQWPDGTHHWLEINGSLAPDKAGR-RRMIGVIRETTRQREREHALSHSEKRFAT 164 Query: 533 AFQDNLTGI-PNRQSFLDRLTTILDLSATDDNLRPT 567 F + PN + ++ + + Sbjct: 165 LFH-----LCPNMVLLTRQADGLISEANQYFEMLFG 195 >gi|224824518|ref|ZP_03697625.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] gi|224603011|gb|EEG09187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] Length = 943 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 160/585 (27%), Positives = 275/585 (47%), Gaps = 12/585 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDI 434 + + F I V ER LA + + + D + + Sbjct: 352 VAMRDSFGRINAVWRMVRDISEKRVAEERMQLAAKVFENTVEGIMITDADKRIRSVNRAF 411 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 + I G + G + L + + F + S + G Q E R + + + Sbjct: 412 SQITGFGQQEVLGQKPDMLSSGRHD--ETFYEAMWSAI-NEHGSWQGELWNRRKNGEVYP 468 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + I + N+ G+I Y+ I +D++E+K + E I A D LTG+PNR DR+ Sbjct: 469 EWLAISAVRNAVGEITHYVAIFSDLSERKAADERIQFLAHFDVLTGLPNRAHIQDRVELA 528 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + + D N R ++++D+D++K IN+ LG + GD +L L RI L +++AR G Sbjct: 529 IQNATRD-NERLALLLLDLDRFKTINESLGHSAGDALLQVLAERIRSTLLTGEVVARQGG 587 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F ++L + A A +R+ + P+ L I++T SIG + + ++ Sbjct: 588 DEFIVLLPLIADPGSAALAAERIREVLEPPVELFNHSISITPSIGISVFPDDGRDFETLV 647 Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 +NA+ AMYHAK G N + + ++ + + I+ L A++ E L Y P + L Sbjct: 648 RNADAAMYHAKSAGRNSYKFYTADLNARAREILEIESQLRYALDRDEFVLHYQPQVDLKT 707 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 EI+G EALI+W HP+ G + F+ +AEE I I ++++ R + WR Q P Sbjct: 708 GEIIGAEALIRWQHPELGLLGPVRFIEVAEERGFIVQIGNWVIQEACRQLAQWRRQGL-P 766 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I + +N+++ +L +Q +S S + + +ESV+M + E + + R++ Sbjct: 767 RISLAVNLSTLQFRQQDLAVHLQRALSAHGLVGSDLDVEVTESVIMDDVETTIHTIDRIK 826 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 +G+ L++DDFGT S LSYL D +K + S + AI R+II MAKN+ Sbjct: 827 SMGLQLSIDDFGTGYSSLSYLKRFKADKLKIDRSFVRDIPMDADDSAIARAIINMAKNLN 886 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 T+IA+ + K L R GC Q +A P+ +LL++ Sbjct: 887 MTVIAEGVETIEQWKFLDREGCHAAQGYLLAKPVPAKEFERLLEK 931 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 2/167 (1%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 A + L+ + + + + + + D + + Sbjct: 221 WTRAELKRLIDELRAKTLALESDIARRREVEDALRRSENKYRELFWSNLDGIVISSLDGQ 280 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + P ++ + + ++N+ I R LD+ V ++E Sbjct: 281 VIDANPAFLNLMCYSLDQL--KLQNFWSLIAPESEGMERFNLDNKVLRFGYCDEFEASYI 338 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + ++ M +S G I + DI+E++ + E + A Sbjct: 339 NRFGNVVPVSVKTVAMRDSFGRINAVWRMVRDISEKRVAEERMQLAA 385 >gi|206970092|ref|ZP_03231045.1| sensory box/ggdef family protein [Bacillus cereus AH1134] gi|206734669|gb|EDZ51838.1| sensory box/ggdef family protein [Bacillus cereus AH1134] Length = 909 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 173/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 +I + + S F L + + R+ D F ++P Sbjct: 52 SYIIYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L I + + + A F +Y++ ++ I T Sbjct: 109 L------FLFSITFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L+ + Q L T Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAITRAKISKKP-FAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L+ GI ++DDFGT S Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKDYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|119493194|ref|ZP_01624069.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106] gi|119452759|gb|EAW33936.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106] Length = 990 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 145/579 (25%), Positives = 263/579 (45%), Gaps = 28/579 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + ER V D + +I + + Sbjct: 431 IGIQKDISERKRSEANLKKSQERLKKIVSAISDALIVININGLIKFVNLAAEVLFDRSES 490 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G ++ D+ E + + ++ IR Sbjct: 491 FLIGYPIG--NFLLEEDK-------------------IELTIVQPKGKLVFVEIR-SVEI 528 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G+ + DITE+K++ E + +AF D LT +PNR F+D+L + + T + Sbjct: 529 DWEGEKATLV-SLRDITERKQAEEQLRHSAFYDALTNLPNRALFMDQLEQAITQTKTLNQ 587 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V+ +D+D +K +N+ LG +GD +L+++ R+ L+ DILARL G+ F +L Sbjct: 588 TSFAVVFLDLDSFKFVNESLGHIIGDQLLIAIADRLETCLRSGDILARLGGDEFTFLLKD 647 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++ + P +L ++ AS+G A + E+L++A++AMY Sbjct: 648 IEQVSQAITVVQNIQHKLTFPFDLSSHQLFSNASLGIALISPDYTYPEEVLRDADIAMYS 707 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK RG N F R+ ++ DL A E + + Y PI+ L +IVG EAL Sbjct: 708 AKQRGKNCYAIFNSQMRKKSQHRLQLETDLRYAWEQQDFLVYYQPIVCLQTHQIVGFEAL 767 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINI 800 I+W H G IS +F+ +AEE +I + ++L+ + +W + + +N+ Sbjct: 768 IRWQHLTKGLISPYQFIPVAEETGLIIELGSWVLKTACHQLKAWTRTNPRMQHLKMSVNL 827 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +S+ + D + + ++++T +P +KL +ES++M NPE + L ++R I L+L Sbjct: 828 SSRQIQDYNFVKKINQVMTETQINPQNLKLEITESILMENPEDVKEKLIQIRSQNIQLSL 887 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL P +T+K + S + + AI+++II +A + +IA+ I Sbjct: 888 DDFGTGYSSLSYLHNFPINTLKIDRSFIVRMNLNPENTAIVQAIITLAHTLGMDVIAEGI 947 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +K L + C+Y Q + P+ KLL+ + Sbjct: 948 ETVEHLKHLQALECEYGQGYLFSKPVSAIEADKLLESQQ 986 Score = 76.5 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 7/119 (5%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 S D+V D P +ILG +G + W+ Y+H +D++ + + Sbjct: 38 SPDLVGITDFNGYFKEVNPAFESILGYTAGQLLAQP--WIEYVHPDDQNATLQAFEQLLN 95 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + +E R R DN + ++ +++ +++ + DIT QK + + Sbjct: 96 QE-PIINFENRFRCQDNSYKYLSWTA--IADLENNLVYAVA--RDITMQKHTETQLRWR 149 Score = 75.0 bits (183), Expect = 6e-11, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 31/207 (14%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDI 434 I L I + + S+ ER A+ + + + D + + Sbjct: 299 INFLQAIANILAMAVERHRSEEYLHLLER---AINSANNGIIITDPHQPDNPIIYFNTAV 355 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 G + + G +L DR+ + + R D W Sbjct: 356 EHSTGYPASEIMGKNCRFLQG---KDRNQPEINIIRAAISAKKECNVVLRNYRKDGSLFW 412 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + I P+ N+ G + +IGI DI+E+K+S N + +RL I Sbjct: 413 NELFISPVFNNKGKLTNFIGIQKDISERKRSE---------------ANLKKSQERLKKI 457 Query: 555 LDLSATDDNLRPTVMVIDIDKY-KKIN 580 + + ++VI+I+ K +N Sbjct: 458 VSAISD------ALIVININGLIKFVN 478 >gi|56477067|ref|YP_158656.1| putative sensory box/GGDEF family protein [Aromatoleum aromaticum EbN1] gi|56313110|emb|CAI07755.1| putative sensory box/GGDEF family protein [Aromatoleum aromaticum EbN1] Length = 698 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 146/551 (26%), Positives = 257/551 (46%), Gaps = 13/551 (2%) Query: 410 AVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 A+ S + V+ D + P ILG A GS G + + N T Sbjct: 147 AIESSVNGVFIADASCADYPLIYVNPAFERILGFAPGSALGRACICRDGV-PGEVCNGYT 205 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + + + + + + P+ N +GD+ +IG+ ND+T + + Sbjct: 206 DICQAISRGTEGYTV-LNLERENGAQQSVELFLAPVENESGDVTHFIGVLNDVTARTHAE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + ++ A D LTG+PNR DR+T + S VM +D+D++K +ND G A Sbjct: 265 KRLIHQASHDALTGLPNRNLLNDRITHAIARSR---GRLTAVMFLDLDRFKLVNDSYGHA 321 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD ++ + R+ L+ D +ARL G+ F ++L + A A +R ++ + Sbjct: 322 VGDALIREVANRVSACLRAGDTVARLGGDEFVVLLEDLASIEDAARLAAKLRDRLSESVR 381 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 + E+ ++ASIG A +LKNA++AMY AK RG N+ + R Sbjct: 382 IGSLELPLSASIGVALAPRDGRDPEMLLKNADIAMYRAKERGRNNYCFYGPEMDHHARRR 441 Query: 707 I--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + + +L A+ EL Y P + L + G EAL++W HP+ + EF+ +AEE Sbjct: 442 LTVESELRRALAGGELEAHYQPQVDLATGALTGAEALVRWRHPERCLLLPGEFIAVAEET 501 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + +L R WR+ P + + +N++ ++L E + ++++T Sbjct: 502 GLIVPLGEQVLRAACRQSTRWREA-GRPDLKVAVNLSGHQFRQHDLVEQVCDILAETGAH 560 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 ++++L +ESV M + + S L LR+ GI+L +DDFGT S LSYL P DT+K + Sbjct: 561 AAQLELEITESVAMADADGSVATLAGLRRQGIALAIDDFGTGYSSLSYLKRFPIDTLKID 620 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + G AI+++II MA+++ +++A+ + + L GC Q Sbjct: 621 RSFIQGIPADGDDTAIVQAIIAMARSLRLSLLAEGVETPAQREFLVAQGCRSGQGFLFGR 680 Query: 943 PLGFNSILKLL 953 + ++ Sbjct: 681 AMPAEDFHHII 691 >gi|94265540|ref|ZP_01289287.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1] gi|93453940|gb|EAT04290.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1] Length = 940 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 143/587 (24%), Positives = 253/587 (43%), Gaps = 17/587 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + ++ +++ E + + + D V+ A G Sbjct: 347 MLESLAEYLAPLLAARLESRRAEELVARILETIDEGFIIIDHEFKIVSANRAYAESAGYP 406 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIR 498 + G + H D+ + D V + A + ++ + Sbjct: 407 LAEIIGRHCYQVS--HQIDQPCYLNGEDCAVQHVFNTGEPHTAIHTHYTAAGEPLYVETK 464 Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 P+ + G + R I + DIT++K + I AF D LT +PNR+ F DRL + Sbjct: 465 AYPLERDDLGTVRRAIEVVTDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAISA 524 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 SA V+ +D+D +K +ND G +GD +L +RI E ++ D ++R G+ F Sbjct: 525 SARSGQ-HGAVLFLDLDNFKTLNDTRGHDIGDLLLTMAAKRIQETVREDDTVSRQGGDEF 583 Query: 618 GIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 ++L + + A A +R ++ P +L E + SIG + + E Sbjct: 584 MVLLNNLSPDRHAAISQAGRVAEKIRAALDQPFDLDGYEHHIGVSIGIGLFMGHDTSVDE 643 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730 +LK A+ AMY AK+ G N V F + DL A+ + L Y P Sbjct: 644 LLKRADAAMYQAKNAGRNQVRFFDPEMQAELEQASALVMDLRQAIWQGQFQLHYQPQTA- 702 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 D I+G EAL++W HP+ G +S +F+ +AEE +I AI ++LE + +W D Sbjct: 703 NDGRIIGAEALLRWTHPERGPVSPMQFIPLAEESNLILAIGRWVLEEACGQLAAWADLPA 762 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + +N++++ E ++ +++ T P +KL +ES+VM + + Sbjct: 763 AGNCKLAVNVSARQFRQPEFVAEIRRILAATGADPKLLKLELTESIVMTELADTVSKMHE 822 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 LR +GI ++DDFGT S L+ L +P + +K + + + AI+ +II M + Sbjct: 823 LRDLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMGRT 882 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ +IA+ + + + LTR GCD Q + P+ LL Sbjct: 883 LDFQVIAEGVETKEQLATLTRYGCDAYQGYLFSRPVPAAQFAHLLTS 929 Score = 45.7 bits (107), Expect = 0.037, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 15/173 (8%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A + +R + D AT+LG ++ R Sbjct: 51 ALRKSQLELEESRDRYVELYDFAPVGYVTLDPKGRIREANLTAATMLGSERSRLYQ--RG 108 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN--QFHWMIIRIRPMSNSNGDI 509 ++ + + L + R + E ++ D F + R + +G+ Sbjct: 109 LGRFVSQEYLEPWYLHLAAARKGD-DRQECELLLQRDDKKTSFFAHLASKRVVKEESGE- 166 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 DIT++K++ A L +F +R+ I ++ Sbjct: 167 RFIHTTLTDITQRKET--ETELAAHHRKL-------AFRNRIAQIFLTRGHEE 210 >gi|315126116|ref|YP_004068119.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913] gi|315014629|gb|ADT67967.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913] Length = 1000 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 151/581 (25%), Positives = 270/581 (46%), Gaps = 12/581 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + I + L + I R S AV SG V D P + + Sbjct: 419 MTIEIRKLIDGLNQRIIEKEIAEKAANRLSKAVAFSGTGVVITDENFVIEYVNPKMLEMT 478 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 A L I N+ +D + R + + + A + W+ + Sbjct: 479 DFAESDFLRQP---LLTIIANEMTMLVEDIDIDLRNRN-YWRGDTLIEAQNKPPIWVSLS 534 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + P+ G I Y+ A DI+ K+S + A+ D LTG+ NR F +L + L+ Sbjct: 535 VSPIREDGGKITSYVASAQDISFVKESQRKMEQLAYFDTLTGLANRTFFRMQLRKSMALA 594 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + D+D++K+IND LG GD +LV + R+ + L+ D +ARL G+ F Sbjct: 595 ER-GRYSFALFYFDLDEFKRINDTLGHDAGDQLLVEVATRLKQRLRAEDTIARLGGDEFA 653 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L + + ++ A ++K++ PI L E+ V+ASIG + ++LK+A+ Sbjct: 654 VLLSGIEHQKEASEVADTIQKTLNQPIKLGSNEVIVSASIGITLAPFDSLEEDQLLKHAD 713 Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 LAMY AK +G N + ++R+ ++ +L A++ +L L Y P + D +V Sbjct: 714 LAMYEAKAKGRNTFHFYSQDLNAAANERLFLENELRHAIKEKQLTLHYQPQVDCRDNSVV 773 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP I ++F+ IAE +I + ++L++ Q + Sbjct: 774 GYEALLRWFHPTQEFIPPTKFIPIAEATGLIVELGKWVLQQACEFTKRLEQQGRASN--M 831 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN++++ D L ++ +I +T + + L +ES++MGN E + L +L+K+GI Sbjct: 832 SINLSARQFKDASLVPMLKKIIIETQINAKSLHLELTESMLMGNVEAAIDQLHQLKKLGI 891 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 S+++DDFGT S LSYL P D +K + S + + + I +II MA+ ++ ++ Sbjct: 892 SISIDDFGTGYSSLSYLKRFPVDILKIDRSFVKDIPEDDNDMEITAAIIAMAQKLKLDVV 951 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L C +Q + + P+ I L + Sbjct: 952 AEGVETIEQVEFLQNNNCFIVQGYYFSKPVAEADIPVLFDQ 992 >gi|134299209|ref|YP_001112705.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Desulfotomaculum reducens MI-1] gi|134051909|gb|ABO49880.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfotomaculum reducens MI-1] Length = 947 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 130/435 (29%), Positives = 233/435 (53%), Gaps = 6/435 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K+ E + A+ D+LT +PNR F DRL+ L+ + + N + VM +D+D +KK+N Sbjct: 504 ERKRIEEILRYLAYHDSLTELPNRTLFNDRLSMALNQAHRNKN-KLAVMFLDLDHFKKVN 562 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L + +R +LL+ D +AR+ G+ F I+L + + + A + + Sbjct: 563 DTLGHDIGDQLLKGIAQRFSKLLRKGDTIARIGGDEFTILLHNITRAENASIVADKIIDT 622 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +A P + E +T SIG A + + +LKNA+ AMY AK G N+ + + + Sbjct: 623 LANPWIIGNHEFHITTSIGIALYPDDGTDAESLLKNADAAMYQAKEMGRNNYQFYTPTMN 682 Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 ++ +L A++ E + Y P + + +IVG+EALI+W HP+ G IS +EF+ Sbjct: 683 AQTLRRFELENNLRRALDRKEFVIYYQPQVEIHTGKIVGVEALIRWQHPQRGMISPAEFI 742 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I I ++L R +W+D+ P+ + +N++++ L L + + ++ Sbjct: 743 PMAEETGLIIPIGEWILRRACAQNKAWQDR-GFSPMRVTVNLSARQFLQPHLPQYISNVL 801 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 T P ++L +ES+ M + + L LRK+GI+L +DDFGT S L+YL +P Sbjct: 802 EDTGLGPQWLELEITESLAMKDVAFTEKTLIELRKMGITLAIDDFGTGYSSLNYLKRLPI 861 Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S + +AI+ +II + N++ ++A+ + + + L + CD +Q Sbjct: 862 DILKIDRSFIHDLNTESDDVAIISAIITLGHNLKMKVVAEGVETKEQLMFLRQQQCDLMQ 921 Query: 937 DSHVASPLGFNSILK 951 PL + + Sbjct: 922 GYLFTKPLPVRELEQ 936 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 26/188 (13%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLP 454 ++ I+ ER + + D + + + + +L + G + + Sbjct: 211 NKEIYLAHERLNNILESITDAFYAVNHQWEVTYVNTEAEKLLHKKRLDIIGKNIWQEFSE 270 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H F IL + + + Q+E+ + W I P +S+G + Sbjct: 271 MVH----TKFYHILHQVMSEQIYQ-QFEY-FFQPTGK--WFNIHAYP--SSDGLSIY--- 317 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIP-------NRQSFLDRLTTILDLSATDDNLRPT 567 +DITE K E + L+ + NR + + L I+ SA Sbjct: 318 -FHDITEYKLVQEKMSLQNQY--LSSLHETTLALMNRLNLDELLKAIVTRSAELSGTDHG 374 Query: 568 VMVIDIDK 575 + + ID Sbjct: 375 FIFL-IDN 381 >gi|228903775|ref|ZP_04067892.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] gi|228855864|gb|EEN00407.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] Length = 909 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 176/870 (20%), Positives = 353/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSD--LF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L + Y+ N L + ++ + A F +Y++ ++ + Sbjct: 107 YL------LFLVTFAFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 T + +V L Y +D FL +NL L + LSS+LI++ Y + Sbjct: 161 FTTSYIDIFVQLTYPMVDLLFLLIGINLLFKPLSLLPKKVGALLSSALILYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + ++ + + + Sbjct: 221 IKYFIPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILI--FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 +L I + I + + + +++ L+ + Q L Sbjct: 281 ITLILFILVEYVFGPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ I Sbjct: 401 --YYSLIYEEDLEEMINSFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKE-KI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR++F L + + VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIENYKKKPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G Sbjct: 575 VQKMADIIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL +A+ N E +LVY P I +I+G EALI+W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPIALVNKEFHLVYQPQIDTTTNKIIGAEALIRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ Sbjct: 695 LLGDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-ILGYQNLKISVNLSAKEFRQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT Sbjct: 754 DQLIENISQILNNVSVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL N +K L++ Sbjct: 874 FLQKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|56460100|ref|YP_155381.1| signal protein [Idiomarina loihiensis L2TR] gi|56179110|gb|AAV81832.1| Signaling protein with a ligand-binding sensor domain, PAS, GGDEF and EAL domains [Idiomarina loihiensis L2TR] Length = 1230 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 139/569 (24%), Positives = 278/569 (48%), Gaps = 19/569 (3%) Query: 399 GIFSDGER---QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + S ER + ++ D + +D + I G + + G + Sbjct: 671 RLVSSEERITMLASSITNISDGICIFDRFFRKREVNNAFERISGFSRDQVLGQLLTLE-- 728 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +F + V + G + E A+ + M + + + + NG++ + Sbjct: 729 CYPE---SFVNQIKRSVI-KEGTWRGEITDVKANGEEFLMELTLDAVRDDNGEVSLIVAS 784 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DITE++ + + + D LTG+PNR F + + + T+++ D+D Sbjct: 785 FSDITERRHTENELRRLSNTDTLTGLPNRSYF-----QVSHSNLVRKKVSHTLLLFDLDD 839 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +KKIND LG +GD++L + R+ ++ + D L RL G+ FG+++ + I D A Sbjct: 840 FKKINDSLGHEIGDELLCQVAERLMDIGRRQDTLYRLGGDEFGLLIEDSVDINLIGDLAN 899 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +A P + + EI + +SIG + TS E+L+ A++AMYHAK RGGN + F Sbjct: 900 QINLKVAEPYFIEQHEIVIGSSIGIVLYPHDGQTSQELLQKADMAMYHAKQRGGNCYQFF 959 Query: 696 RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 S + R+ ++ +L A+++ + + Y P I + I GLEAL + + I+ Sbjct: 960 SQSMNENAVKRLKLENELRAALKSHNIRVYYQPKIEIHSGHIAGLEALARIESEDGSMIN 1019 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 ++F+ +AEE +I + +L RD+ + P I +N++++ + + L Sbjct: 1020 PADFIPLAEETGLIIPLGEEVLRLACRDMKRFMACQGSPK-SIAVNLSARQFMQSSLALQ 1078 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ ++ + P ++ +E +VM +PER+ ++ L +G+ L LDDFGT S LSYL Sbjct: 1079 IEQILREEGLHPRHVEFEITEGMVMSDPERAITMMENLSDMGVKLALDDFGTGYSSLSYL 1138 Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P +++K + + + +K ++ SII MA N+ ++A+ + + ++ L + Sbjct: 1139 KRFPMNSLKIDKAFVDDITINDKDRNMVASIIAMAHNLGLKVVAEGVETKAQLQTLKSLK 1198 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLV 960 C+YIQ + A P+ +++++ +++ + Sbjct: 1199 CEYIQGFYFAKPMPADALIEFIEQHNEVA 1227 Score = 71.9 bits (175), Expect = 5e-10, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 4/184 (2%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 W + A +G +++I++ + + + RQ+ Sbjct: 504 WSPSAVAQLDVPAPFWKTPLAWLGYILIIILCLFSYWLYQRQRQAKMRHDLKQ-YRRQAQ 562 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 VL S W+WD+ + + + + +H D + L+ Sbjct: 563 GVLSSRYQCWEWDLESGELIRQNIWDNCPAFSIDGIRLGLSGGKSNVHPEDLKRLQKSLE 622 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + +R+ + W++ R + N+ G +DI+ S E I Sbjct: 623 DHLSGESELFECSYRL-DNQGNWLWVLDRGKIQVNNERRT--MFGTLSDISRLVSSEERI 679 Query: 530 LCNA 533 A Sbjct: 680 TMLA 683 >gi|83647143|ref|YP_435578.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83635186|gb|ABC31153.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 806 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 155/560 (27%), Positives = 275/560 (49%), Gaps = 7/560 (1%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 ++ + SLA+ S V D + + G S+ G L +I ++ Sbjct: 242 AAEIRKLSLAIEQSPSSVLICDKRWKITYANQKFSQLTGHNLNSIIGKHPKTLTHISPDE 301 Query: 461 RDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 N + + + R G Q E + W + I P+ +++G+ +Y+ + DI Sbjct: 302 SQNEQLWHNIEIQVERAGMWQGEMHSTRHGGEKFWEQVVITPIRDTDGESSQYLILGEDI 361 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + +K+ + +L A D LTG+PNR LDRL L S D + +M +D+D +K I Sbjct: 362 SVRKRYEQQLLRQANYDLLTGLPNRMLALDRLKLALAQSRRD-KSQVGLMFLDLDNFKHI 420 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG GD +L+ +RRI L+ +ARL G+ F IIL S + A + + Sbjct: 421 NDTLGHDNGDTLLIEASRRIASSLRGNSTVARLGGDEFLIILPSLESPEDSELVAARILQ 480 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697 + + P L +EI V+ SIG A + + SS +L+ A+ AMY AKH+G + F Sbjct: 481 AFSSPFLLNNQEIFVSTSIGIAIYPTDSENSSTLLQQADAAMYQAKHKGKSAYHRFTPDL 540 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + +R+ ++ L A+E EL L Y PI+ + ++VG EALI+WD+P G ++ +F Sbjct: 541 NQQSRERLKLETQLRKAIEQDELLLYYQPIVETANGQLVGAEALIRWDNPLLGLVAPDKF 600 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I +I ++L RD+ W + + I +N++ + D + + + Sbjct: 601 IPLAEETGLITSIGEWVLHTACRDVKKWHEDTG-LKLTIAVNVSPRQFRDVKFIDTVMKA 659 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + ++L +E +++ + + +L +L +G+ L++DDFGT S LSYL P Sbjct: 660 LEVNDLAGEYLELEITERLLLDDSIETFEILHKLDAMGVKLSVDDFGTGYSALSYLKSYP 719 Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 FD++K + S + + A++ +II MA ++ +I + + ++ L GCDY Sbjct: 720 FDSLKIDRSFVKDVNTEAEDAALVTAIITMAHSLGLKVIGEGVEDVAQMQFLRAKGCDYA 779 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + P+ + + E Sbjct: 780 QGYYYNRPVAESDFCNWISE 799 >gi|254000430|ref|YP_003052493.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253987109|gb|ACT51966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 1150 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 143/578 (24%), Positives = 265/578 (45%), Gaps = 13/578 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 IQ ++ + E LA S + + D + +T P + + G + Sbjct: 575 TIQGIIISSENISARKQAEEELRLAHTVFEHSSEAMLVTDADNNIITINPAFSEMTGYSL 634 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G L ++ ++ + ++ G + E R + + + I + Sbjct: 635 EEVIGKNPKILSS-GRQGKEFYQELWNTL--ETSGEWRGEIWNRRKSGEEYAEWLAINNI 691 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + +G + R + + +DITE+K++ I A D LT +PNR+ F DRL + S D Sbjct: 692 YSEDGKLFRRVALFSDITEKKRADALIWNQANYDLLTQLPNRRLFSDRLQQEIKKSQ-HD 750 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + + ++ ID+D++K++ND LG + GD +L+ + RI LK D + RL G+ F +I+ Sbjct: 751 HSQFALLFIDLDRFKEVNDTLGHSHGDYLLIEASHRIQRHLKETDTVGRLGGDEFTVIIA 810 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + A + ++A P +L + ++ASIG + TS+E+LKNA+ AMY Sbjct: 811 NLPDPSVMTLIAQRVLDALAAPYDLEGEIVYLSASIGITVFPEDATTSAELLKNADQAMY 870 Query: 683 HAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N F + + + DL A+ ++ + + PI+ L + I EA Sbjct: 871 EAKKNGRNRFSFFTPMMQAMAQARMRMMRDLRNALGLNQFTVYFQPIVDLSSQRIHKAEA 930 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G IS +EF+ +AEE +I I ++ ++ A+ + + +N Sbjct: 931 LIRWQHPELGFISPAEFIPLAEETGLIHEIGDWVFQQSAQLVKQCIPIVGD-DFQVSVNK 989 Query: 801 ASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 + D + + +S S I + +E +++ L R G+ + Sbjct: 990 SPVQFRDRTQAHQDWMEYLSGLGLSGHNIVVEITEGLLLNADSGISDKLLHFRDAGMQVA 1049 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL D +K + S + + + +A+ +I MA ++ +IA+ Sbjct: 1050 IDDFGTGYSSLSYLKKFDIDYLKIDQSFVRNLSGEGEDLALCEAIATMAHKLDLRVIAEG 1109 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L ++GCDY Q + P+ ++LL+ Sbjct: 1110 VETTAQRDLLAQIGCDYGQGYLFSRPVPAEEFMQLLER 1147 Score = 117 bits (294), Expect = 8e-24, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 3/175 (1%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L +G L L+ ++ ++ + + + + +R + G+ W+ Sbjct: 301 LLPYSRYIAPALGLLSLVGAIVLLWILLLRRSVKTKTAELANQHQRLQQIIDGTAAGTWE 360 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 WDI P A +LG + + H +D + L++ + Sbjct: 361 WDIRSGDCIVNPRWAEMLGYTPDELEPCTADSCRALCHPDDLEQLVQALEAHLRGETDYF 420 Query: 480 QYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 E R R + + W+ R R + G+ L G +IT+ K + E L A Sbjct: 421 ASESRRRHKNGHWIWVADRGRVTRRSPQGEALTMSGTRLEITKLKLA-ETTLKQA 474 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 5/140 (3%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + E+Q + + + V +D + + G GS+ G Sbjct: 467 AETTLKQAVEQQKMFIQQAPICVAMFDRDMRYLACSNQWQEEFGHQQGSLLGLNHYD--- 523 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 +H + + +R + R + + +R AD Q W I P + + I I Sbjct: 524 VHPDIPEKWRQAHQRALAGERLEEEEDLWIR-ADGQHLWTRWMITPWMDDSQTIQGIIIS 582 Query: 516 ANDITEQKKSLEGILCNAFQ 535 + +I+ +K++ E + A Sbjct: 583 SENISARKQAEEELR-LAHT 601 >gi|152993068|ref|YP_001358789.1| hypothetical protein SUN_1481 [Sulfurovum sp. NBC37-1] gi|151424929|dbj|BAF72432.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 813 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 140/569 (24%), Positives = 273/569 (47%), Gaps = 19/569 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLP 454 ++ I E S D + D + + IL S ++ + +P Sbjct: 244 TREINKQKETFETLFEKSSDGILIVDGST-FIECNEKMVEILKYDSKEKLLNMHYTSMVP 302 Query: 455 YIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + R+++ + + ++ + Q+E AD + + + P+ ++ + Sbjct: 303 KFQPDGRNSYEKSKEMVLLAKKYKGYQFECVYIRADGEKFLAEVTLTPIMLGKRHVIYTV 362 Query: 514 GIANDITEQKKSLEGI-------LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 DI+++KK+ + + A D LTG+PNR F DRL L L+ + Sbjct: 363 --VRDISDKKKAQQELLKQKDILHHQAHHDALTGLPNRTLFSDRLEHGLKLAERHLG-KL 419 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 + ID+D +K+IND LG +GD VLV +++R+ ++ D LARL G+ F II+ + + Sbjct: 420 ALFFIDLDNFKQINDSLGHQIGDKVLVVVSKRLKAKIRQEDTLARLGGDEFTIIMENFKD 479 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 +++ A ++K + P+++ + ++ SIG + + +++++K A+ AMY AK Sbjct: 480 VQQVSVLAQKIQKVLNQPMHIEGHTLYISCSIGISFYPQDTQNANDLVKYADAAMYKAKE 539 Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N+ + + ++ L A++N E L Y P + + G+EALI+W Sbjct: 540 EGRNNFQFYSTEMTTLAYERVVMEASLRQAIKNEEFILYYQPQVNAQTSRMTGMEALIRW 599 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 +HP G I +F+ +AEE +I I+ +++ + + W + P + + +N++ + Sbjct: 600 EHPHLGMILPDKFIPLAEESGLILEIDRWVMRTAMKQVREWYARGLDPGV-LSLNLSMRQ 658 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L D + ++ + + P ++ +E +M P+ + LG ++ +GIS+ +DDFG Sbjct: 659 LKDENFIDVIKEYLHMMSFEPEWLEFEVTEGQMMKRPDDAVASLGEIKSMGISIAIDDFG 718 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L YL +P +K + S + G E R AI+++ I +AK++ +IIA+ + E Sbjct: 719 TGYSSLGYLKRLPVSRLKIDQSFIHGIPEDRENAAIVKATIALAKSLSLSIIAEGVENEE 778 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951 + L GC +Q + P+ + I K Sbjct: 779 QKEFLLFNGCISMQGYYYGRPMTADQIEK 807 >gi|89093373|ref|ZP_01166322.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] gi|89082352|gb|EAR61575.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] Length = 932 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 147/612 (24%), Positives = 263/612 (42%), Gaps = 51/612 (8%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 +++ + + + Q+L + + + R + G +G + Sbjct: 322 IVEDIDQQVKADEALKVILNEQNLILDYAMVGIVFL-KNRSVTRCNQRFEEMFGYNAGEL 380 Query: 446 HGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G R W Y+ D + + Q E + D W + + + + Sbjct: 381 AGSSSRQW--YLTEQDWKAAGKACYKPLSQGKV-FQDEMLLSRKDGSPIWCEVTSKAI-D 436 Query: 505 SNGDILRYIGIANDITEQKKSL-------------------------------------- 526 + I I DITE+K + Sbjct: 437 PDDLAKGSIWITMDITERKAADVALARAHEDLELRVKERTKELAKANMDLLVEINERKMA 496 Query: 527 -EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+PNR +RL L + + + V+ ID+D++K +ND LG Sbjct: 497 EERVKHMALHDALTGLPNRLLLEERLENALSDAKSHQ-WQLAVLFIDLDRFKLVNDTLGH 555 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD +LV + R+ +++ D +ARL G+ F I+L S +I ++++ + Sbjct: 556 HEGDQLLVEVANRLHQVIGANDTVARLGGDEFVIVLNEIAGSTEINGVIEDIQQNFKPAV 615 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703 L +++ VT SIG A + T +++KNA+ AMYHAK G N + F S + Sbjct: 616 KLALQDMFVTPSIGVAIYPEDGETPVQLMKNADAAMYHAKASGRNCAQYFNRSLDDSLKE 675 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R+ ++ L A++ + L Y P + + I+G EALI+W+HP+ G IS F+ +AEE Sbjct: 676 RISLENALNQALKLGQFELYYQPQLDVKSNRIIGAEALIRWNHPEKGMISPDAFIPLAEE 735 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I ++L + + + WR Q + + +N+++ + + +I + Sbjct: 736 SGLIVDIGSWVLHQASSQLAQWRKQGFDQ-LSVSVNLSALQVQKESFAREVADVIREYGV 794 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 + + L +ES++M N E + L ++ +GI +++DDFGT S LSYL P D +K Sbjct: 795 PEACLDLELTESMIMRNAEETIAALDKIHNLGIQISVDDFGTGYSSLSYLKRFPLDKLKI 854 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + I ++II MA N+ +IA+ + ++ L GC+ Q A Sbjct: 855 DRSFVQDITVDTDDAMICKTIISMAHNLNLQVIAEGVETNAQLELLRDYGCEQYQGYLFA 914 Query: 942 SPLGFNSILKLL 953 PL + + L Sbjct: 915 KPLPVEQMTEHL 926 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 56/182 (30%), Gaps = 14/182 (7%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412 G ++ T I V L+ + + + + + Q + Sbjct: 160 GHFLTHTTDGPRWHIIQLNKSVAVNESWLVQLREL-DIDQFIQNEHSLRNTLKEQEVIFE 218 Query: 413 GSGDIVWDW----DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 +G + D R + A I + G ++ D + F + Sbjct: 219 HAGTGICFIKDSQDHERKIIRCNRKFADIYDYRVEELIGQSS---SILYP-DFEAFSELG 274 Query: 469 DSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKS 525 DS + +++ D W IR + SN G L YI I DI +Q K+ Sbjct: 275 DSAYPSLMEGTLYTQKMKMKRKDGTLFWTQIRGNIISSNEPG--LGYIWIVEDIDQQVKA 332 Query: 526 LE 527 E Sbjct: 333 DE 334 >gi|296284370|ref|ZP_06862368.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum JL354] Length = 785 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 174/793 (21%), Positives = 337/793 (42%), Gaps = 55/793 (6%) Query: 200 SLLAIFLTIFYMVNRSSMLIPTFAMA----WVVLGYISIDFGFLSKLVNLPSGELLIWRA 255 LA+ L + + + + +L + G L L + A Sbjct: 16 LPLAVLLGLRDIAGLDRAFLRSLQYDHLAGLSLLRVVGHSVGALVGFACLIPYAPPLLIA 75 Query: 256 CSEIALSSSLIIFLFMYL-------------HWNRWHAKVGYITFSGIACIAILFCMSFY 302 + L+ ++ F + NR ++ + + +LF + Sbjct: 76 AWIMLLAGGVVYFARLERAMIAADLRKVTDRDVNRHLIGSAWLGLAWMLLPILLFVYADV 135 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362 P + A I + + ++ RAV+ I ++ L Sbjct: 136 -PGMLRGYALIGVIVTGVGTALAVVPL------RAVVFISPACIVATVCFALA------- 181 Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIV 418 DI+ ++ G L + L G + E SL + D + Sbjct: 182 -GDIVMTSIAGIYYLANFAAILRRAESFLRAGVAETAMQQKSETVSLLLREFEENEADWL 240 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-----RTILDSFVG 473 W D R + +P A LG + G + + + + +L + Sbjct: 241 WQIDRTRLIRSVSPRFAFALGSPPEQIEGKP--FFEVLSGDGWEVCNFAPSLRVLADRIK 298 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 R +V Q W + PM + G + + G+ +D+TEQ+KS E I A Sbjct: 299 ARESFSNLIVQVW-VGGQKRWWELSGTPMLDERGQEVGFRGVGSDVTEQRKSSEKIAYLA 357 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LTG+PNR + L +D + R +++D+D++K +ND LG +GD +L Sbjct: 358 RYDTLTGLPNRLMLNESLGEAMDEA-RQWRRRCAFIMLDLDRFKAVNDSLGHQIGDRLLE 416 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 ++RR+ EL +I RL G+ F I++ +S + A + + ++ P + + + Sbjct: 417 QVSRRLSELTGENEICGRLGGDEFAIVMRDAPDSCAVDALARKVIERLSQPYEVDQHTLF 476 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711 V AS G A T E+++NA+LA+Y AK G ++ S +R ++ L Sbjct: 477 VGASAGSALAPRDGKTVEELMRNADLALYRAKDGGRGVHFAYEPSLHADAEERRQLEFSL 536 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+E EL L + P++ E +V EAL++W G +S +F+ +AE+ +I I Sbjct: 537 RKALEKDELLLNFQPVVDANSERVVSFEALVRWQSEDHGFVSPGKFIPVAEDTRLIVPIG 596 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 +++++ R+ ++W + + +N++ + L++ + + + ++++ P R+++ Sbjct: 597 TWVMQQACREAMAWPR-----GVKVNVNVSPEQLMEPDFADTVVDALTRSGLDPQRLEIE 651 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +ES+ +G+ E +R L ++ +G + LDDFGT S L YL + F T+K + S + G+ Sbjct: 652 VTESIFLGDAEIARQALAKVMALGCQVALDDFGTGYSSLGYLRKLQFSTIKVDRSFVQGA 711 Query: 892 ---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + + +AI+R+++ MAK++E A+ + E + + + RMGCD IQ + P+ Sbjct: 712 AQGSSESLAIVRAVVAMAKSLEMKTTAEGVETEDEARLVCRMGCDRIQGFYFGRPMSSAD 771 Query: 949 ILKLLKERFPLVK 961 L + ++ Sbjct: 772 ARALFSNDYSQLR 784 >gi|156972882|ref|YP_001443789.1| signal transduction protein [Vibrio harveyi ATCC BAA-1116] gi|156524476|gb|ABU69562.1| hypothetical protein VIBHAR_00559 [Vibrio harveyi ATCC BAA-1116] Length = 815 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 147/554 (26%), Positives = 265/554 (47%), Gaps = 13/554 (2%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + I G + + G N L H + Sbjct: 267 QLSLASKIFDNSHEGMVITDRKANILDVNSAFTHITGYTAEEVIGKNPNILRSGHHD--S 324 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F L + + G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 325 KFYQQLWRQLESK-GQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR + L ++ + + +DID +K IND Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIESGQQHQHA-FATLFLDIDHFKHINDS 442 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F IIL + + ++ D + Sbjct: 443 MGHFCGDQLLTKLADRLQDVLHLRAHVARIGGDEFVIILPNIESDSQLIDTIEDILCLFN 502 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P + + E + ++ S+G A + S +LKNA+ AMY AK G N + Sbjct: 503 RPFEVSKNEPLRISTSVGVARYPQDGQESETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V ++ L A+E ++L+L Y P L E+VG+EAL++W HP G IS ++F+ Sbjct: 563 KSVSHVRMQSALHEAIEKNQLHLAYQPQYNLSANELVGVEALLRWQHPDLGMISPADFIP 622 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I++I ++LE+ +W D + +N+++ L ++ + A++ Sbjct: 623 IAEKTGLIQSIGKWVLEQACLQGRAWLDNGIEFG-KLAVNVSALQLQQSDFISKLGAILK 681 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + R++L +ES ++ +P+++ L LR++GI ++LDDFGT S LSYL +P + Sbjct: 682 ETEFPAHRLELEITESFLLIDPQQAIASLNLLRELGIEISLDDFGTGYSSLSYLKGLPIN 741 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ S AI+ +II M + + ++A+ I + + L GC Y Q Sbjct: 742 KLKIDRSFVSDVPSNTDSNAIVNAIIAMGQTLSLKVVAEGIETDEQAQYLFERGCIYGQG 801 Query: 938 SHVASPLGFNSILK 951 ++P+ + K Sbjct: 802 FRFSAPVRAEKLFK 815 Score = 39.2 bits (90), Expect = 3.4, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 49/194 (25%), Gaps = 7/194 (3%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 P W+ + N +I L I + + Sbjct: 85 YCPVWLP-SGELFAALALVHPTEQNTVISGWLSALAGRIGFDVAQIYHKEQKRHDVQLPE 143 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + + D W T + + + G Sbjct: 144 LLPSLQEFIDCLE---DHTWIKSTDGRYAMTNRSVEDSWQMTGSDIVGKND--FELFSSR 198 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 F + E + +N W+ P+ + G+++ +G+ ++ Sbjct: 199 RAKKFIDTDQLVIATGSQNTVEECTLIDDNNNPTWLETIKSPIRSQTGELVGILGMTRNV 258 Query: 520 TEQKKSLEGILCNA 533 T ++K +E L A Sbjct: 259 T-RRKMVETQLSLA 271 >gi|220936310|ref|YP_002515209.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] gi|219997620|gb|ACL74222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] Length = 842 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 145/570 (25%), Positives = 261/570 (45%), Gaps = 15/570 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 ++ + + ER S + ++ D + + G + + G + Sbjct: 277 TRQLRASEERLSTILNSVEACIYIKDTELRYQYANRKVCELFGASPERIIGRRDA--DFF 334 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGDILRYIGI 515 D V R R E R D + + ++ P+ ++G I GI Sbjct: 335 DAETAARLEQN-DRLVLERGERFAEEEHNRTRDGRHVNTFLTVKLPLRRADGHIYALCGI 393 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 + DI+EQKK LE + AF D LTG+PNR+ +D+L L + ++ ID+D Sbjct: 394 STDISEQKKILEEVHQLAFFDPLTGLPNRRLLIDQLRHALANCDRTGH-EGALLFIDLDN 452 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKI 630 +K +ND LG +GD +L + R+ E ++ D LARL G+ F ++L ++ Sbjct: 453 FKNLNDTLGHDMGDLLLQQIAERLREHVRENDSLARLGGDEFVVMLEGLQPEGGEAVHQV 512 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + ++ P +L +TASIG A ++ S T E+LK A+LAMY AK G N Sbjct: 513 RHVGEKLLGVLSEPFSLDRVVYRITASIGVAMFSDSDDTVEELLKRADLAMYEAKSAGRN 572 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + F S + ++ DL A++ + +L P + VG EAL++W HP+ Sbjct: 573 GLRFFNPSMQAAVSARAALEADLREALQTEQFFLELQPQVDAA-GTAVGAEALLRWRHPE 631 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ +AE MI + ++L + + +W M + + IN++ + Sbjct: 632 RGLVSPGEFIPVAEATGMILPLGDWVLRQACAQLAAWSRDPAMVGLVLSINVSVRQFRHP 691 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + ++ + P R+++ +ES ++ N E ++ RLR G+ +LDDFGT S Sbjct: 692 DFVSRVLDVLEDSGADPRRLEMELTESQLVDNVEEMIGIMMRLRARGVRFSLDDFGTGYS 751 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL +P + +K + S + AI+R+++ + ++++ +IA+ + E + Sbjct: 752 SLSYLKRLPLNQLKIDQSFVRDLLVDSNDEAIVRTVVALGESLDLRVIAEGVEREAQRDK 811 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L +GC Y Q P ++ + + Sbjct: 812 LLALGCRYFQGYLYGRPGPAGALSRCVARE 841 >gi|26988709|ref|NP_744134.1| sensory box protein [Pseudomonas putida KT2440] gi|24983498|gb|AAN67598.1|AE016389_6 sensory box protein [Pseudomonas putida KT2440] Length = 1136 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 144/583 (24%), Positives = 266/583 (45%), Gaps = 18/583 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441 T ++ + + S E+ + A S D + + R + + G + Sbjct: 553 SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYS 612 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + G + I +D+ + L + + R E R + + + P Sbjct: 613 TDEVIGHTVYEI-GIWADDKQR--SALLAELRERGRVHHREMLGRNKRGDILTVEVSVEP 669 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 ++ ++ + A D+++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 670 ITL--NEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 727 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F ++L Sbjct: 728 -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 786 Query: 622 ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 K+ + A +R+ +A P++L + + VT SIG A T +++LK Sbjct: 787 SGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKR 846 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N + F + S+R+ ++ DL LA+ EL L + P + D Sbjct: 847 ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 906 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792 IVG E L++W HP+ G S+F+ + EE +I + ++L+ Sbjct: 907 IVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 966 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + N+ + + + L +E +V+ N E + + L+ Sbjct: 967 DFNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELK 1026 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 + G+S +DDFGT S L+YL +P D +K + S + + I+R+I+ MA++++ Sbjct: 1027 RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLD 1086 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + + L R+GC Q + PL ++L Sbjct: 1087 LAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEFRQML 1129 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 56/157 (35%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 G+ L + + Q + ER LA+ + WDW I + + Sbjct: 288 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 347 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 A + GL H + + ++R++ R S G Q +RV+ + Sbjct: 348 ARAAQLHGLPPIPFHESFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQITYRVQLENGT 407 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ R R + G LR G DIT+Q + + Sbjct: 408 SRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQR 444 Score = 94.2 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + + A+ G+ W WDI RV+ + + G ++L + Sbjct: 60 SEQAWQNAPQLLAALNGAHLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 119 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR R + + V R+R D HW+ I + +G IG+ Sbjct: 120 PEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQ-MIGVI 178 Query: 517 NDITEQKK 524 +IT Q++ Sbjct: 179 REITRQRE 186 Score = 50.3 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 23/178 (12%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442 VI+ + + + +R + S + + + + G Sbjct: 175 IGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPG 234 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G L ++ R + G L E + RA + H I+ + Sbjct: 235 SQVIGKTSLELGLWVNPEQRHQIVESTRA----NGGPLIMEVQFRATSGKVHDGILCTQG 290 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I D TE+K++ A +D+ +RL LD + Sbjct: 291 IELEG--VTFLISTFVDTTERKRAE-----QALKDS----------QERLDLALDSAQ 331 Score = 46.1 bits (108), Expect = 0.032, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 15/166 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + Q + + E+ + S D + + + P G +S Sbjct: 429 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSS 488 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + + + + I + + + +I R + Sbjct: 489 AQVLGRTAEEI-GLWAESVERAKRIEQVIREQALSNVAVV--LNHRNGDPLTCVISSRLI 545 Query: 503 SNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539 + + + DIT+Q+++ E AF D +T Sbjct: 546 TVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 589 >gi|119490567|ref|ZP_01623009.1| hypothetical protein L8106_08046 [Lyngbya sp. PCC 8106] gi|119453895|gb|EAW35051.1| hypothetical protein L8106_08046 [Lyngbya sp. PCC 8106] Length = 696 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 150/576 (26%), Positives = 271/576 (47%), Gaps = 7/576 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 T I+ L Q + + S + D V D + P + G + + Sbjct: 121 TTIEIALYKHQIEQQLRDQSQWLSTILDSIADGVIATDKMGKVNFMNPVAEELTGWSLQA 180 Query: 445 MHGP-IRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G I + IH R + + IL + +L + + ++Q + I P+ Sbjct: 181 GIGQDITSIFNLIHEESRHSLQPLILKTIEQGHSIKLTEPTLLISRNSQEFPIDDSIAPI 240 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 NSN +I + I DIT QK + + + AF D LTG+ NR F+ +L + Sbjct: 241 VNSNNEIQGSVLIFRDITHQKIATDKLRYQAFHDPLTGLLNRHGFMQKLQEADSYRLINP 300 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + + +D+D++K IND LG VGD +L + ++ + ++ D +ARL G+ F I++ Sbjct: 301 DFVFAIFFLDLDRFKVINDSLGHQVGDQLLQVIANKLIQSVRNIDEVARLGGDEFAILIE 360 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ +I A +R I PI++ E+ SIG + +++++A+LAMY Sbjct: 361 NLDDLHEICQIAQRIRNEIIKPIDINGDEVFTNVSIGIVLSSIGYNQVDDLIRDADLAMY 420 Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G E F + ++ DL A++ E + Y PI+ L I G EA Sbjct: 421 RAKTLGRGRYEVFNETMREQVRFIQKLESDLRRALDRKEFQVYYQPIVNLQTSVIYGFEA 480 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILIN 799 L++W+HP+ G ++ +F+ IAEE +I ++ +++ + + W + N PP I +N Sbjct: 481 LVRWNHPERGLLTPGDFIPIAEETGLIMQLDWQVIQEACQQVYHWNENCKNRPPFVISVN 540 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++K + L + + L+ T +K+ +E+ ++ P++ + + +L+ +GI L+ Sbjct: 541 LSAKQFIQANLVDQVTKLLKDTGLESKCLKIEMTETALLEEPKKVAVTISQLKSLGIGLS 600 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S LSYL D +K + S + + I+R+II +A + IA+ Sbjct: 601 LDDFGTGYSSLSYLHRFSVDNLKLDISFIQTMNSEPQSFEIVRTIIVLAHALNINAIAEG 660 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I + L + C Q + + PL +I +LL Sbjct: 661 IETADQLNTLQHLNCPLGQGYYFSKPLPAENIQQLL 696 >gi|160877155|ref|YP_001556471.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160862677|gb|ABX51211.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS195] gi|315269359|gb|ADT96212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS678] Length = 1497 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 139/563 (24%), Positives = 265/563 (47%), Gaps = 12/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + A + + V D+ I+G+ S + G + Sbjct: 932 QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSADLVGQSFTQFVQM 991 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D + + + E + A Q + + + M ++NG + Y+ + Sbjct: 992 N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1046 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K++ + A D LTG+PNR F RL + + + ++ +D+D++ Sbjct: 1047 SDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1105 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV + R+ + +L R G+ F I+L + N+ +I A Sbjct: 1106 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDEINHIAER 1165 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + + I P L RE ++ SIG + W + +KNA+LAMYHAK G + + + Sbjct: 1166 LLEQIVAPFKLYGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1225 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753 ++ + ++ DL A+E E L Y P I + +++++G+EALI+W HP G I Sbjct: 1226 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1285 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AE +I I+ ++L + W + + +NI++ + E Sbjct: 1286 PDIFIKVAEACGLIVDIDRWVLRQACVQGAQWAKRYGAT-FKLSVNISAVHFRQPDFIED 1344 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q ++ +T + + L +E V+M ++ L RL+ +GI + +DDFGT S L+YL Sbjct: 1345 IQRILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1404 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + +T+K + S + AI+ SII +A+N++ ++A+ I ++++ G Sbjct: 1405 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1464 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 C IQ + A P+ + L+ Sbjct: 1465 CYIIQGYYFAKPMCVADFERYLE 1487 Score = 104 bits (260), Expect = 7e-20, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ +I + + + + + +Q + +R ++ GS +W+W Sbjct: 782 LLLLFSIIALSLAWYRQRQINTFKQMNQALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 841 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +LG + + + +H DR+ DS + R + E+R + D Sbjct: 842 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 898 Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP++ + +I R GI +DIT Q++ + + A Sbjct: 899 NWGWLRVRGRPVARNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 943 >gi|294139038|ref|YP_003555016.1| sensory box protein [Shewanella violacea DSS12] gi|293325507|dbj|BAJ00238.1| sensory box protein [Shewanella violacea DSS12] Length = 1486 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 143/582 (24%), Positives = 266/582 (45%), Gaps = 12/582 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + + + + + D + + A + + V D + TI+G ++ Sbjct: 910 SILRVAGIYSDITLQRQLEDDVKLLAQAFGNTSEGVLILDGAERIKVSNKAAQTIVGASA 969 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++G + L D+ +L + E + + + M Sbjct: 970 EMLNGKFFSELILAKEGRSDDIVCLLKQEIS-----WTGEQEFLREQGGSCPVWLNVSAM 1024 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 S G+I Y+ + +DITE+K+S + A D LTG+PNR F RLT +D + Sbjct: 1025 LGSKGNITHYVAVFSDITERKRSEADLRRLANYDVLTGLPNRSLFATRLTQSIDGA-EHS 1083 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + ++ +D+D++K +ND G ++GD +LV R+ + L R G+ F I+L Sbjct: 1084 GEKLALIFLDLDRFKHVNDSYGHSMGDALLVEAANRLQSCISPEHTLCRFGGDEFVILLR 1143 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 N I + + I P L RE ++ SIG + W + ++ NA+ AMY Sbjct: 1144 DAANLDTINHICTQLLEQIETPFELYGREFFISTSIGVSLWPDDAREAEVLINNADQAMY 1203 Query: 683 HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLE 739 HAK G + + F +S + ++ +L A+E E L Y P + + +++ G+E Sbjct: 1204 HAKEEGRGNFQYFSSERNSEALYHLRLEAELRKAIERDEFELHYQPQVNILKGDKLCGME 1263 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W H + G I + F+ +AE +I I+L++L + W P + +N Sbjct: 1264 ALLRWHHHEDGLIRTDIFIKVAESCGLIVDIDLWVLRQACIQGKIWSKSYA-EPFKLSVN 1322 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 I++ + +G++ ++ +T P + +E V+M + ++ L LR +GI + Sbjct: 1323 ISAVHFRQPDFIQGVKRILQETELDPRLLGFEITEGVLMKELDTAKEHLLELRALGIDVA 1382 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL + DT+K + S + E AI SII +A+N++ ++A+ Sbjct: 1383 IDDFGTGYSSLAYLRHFDVDTLKIDRSFLIDIATNEADQAIASSIIELARNLKLNVVAEG 1442 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + + ++++ GC IQ + + PL I K + P+ Sbjct: 1443 VETKEQLEQVFSRGCYVIQGYYFSKPLTVVEIEKYMDNSSPI 1484 Score = 87.7 bits (216), Expect = 1e-14, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 9/152 (5%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + V A + + ER ++ GS +W+W + Sbjct: 789 RQRQVQAFKRINTALVESEERLRQSLKGSDSELWEWRHDSQMFSLENQREE-----KEDD 843 Query: 446 HGPIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G I L IH DRD D+ R E+R R D + W + RP+ Sbjct: 844 RGNIFLKLEDVPIHREDRDKVVNAWDNMQQGLSDRFDVEYRYRRKDKSWGWTRVLGRPVE 903 Query: 504 --NSNGDILRYIGIANDITEQKKSLEGILCNA 533 +G ILR GI +DIT Q++ + + A Sbjct: 904 VDAESGSILRVAGIYSDITLQRQLEDDVKLLA 935 >gi|16124993|ref|NP_419557.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] gi|221233714|ref|YP_002516150.1| PAS family GGDEF/EAL protein [Caulobacter crescentus NA1000] gi|13421971|gb|AAK22725.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] gi|220962886|gb|ACL94242.1| PAS family GGDEF/EAL protein [Caulobacter crescentus NA1000] Length = 842 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 156/722 (21%), Positives = 297/722 (41%), Gaps = 26/722 (3%) Query: 250 LLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGI---ACIAILFCMSFYYPMV 306 + + S ++ L ++ R ++ G+ A L + + V Sbjct: 102 HRVGIGIWAALVISYALLGLRGWVSAQRRKTGKAAVSARGVRRVVLQAALLGLLWGVLPV 161 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 T A ++ + G G+ L A + L D Sbjct: 162 LTFRLGDTSAMPMMVASVIAGMIGCGGFALLTLPAAALAY--STPMVLGSLYMLGTSGDP 219 Query: 367 IQPALVGGLVLIVILIGFTVIQHVL---ATGYFSQGIFSDGERQSLAV----LGSGDIVW 419 I AL G LV ++ + + H + + + SL + G+ D +W Sbjct: 220 ILYALGGLLVFCYAVVIVSCLSHARIFAERLVAADELEKQKQVVSLLLSDFEEGASDWLW 279 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + D + +A G+ ++ G + L L + ++ Sbjct: 280 EVDAAGRLTYVSDRMAAAAGVDKDALLGQPMSDLCGAAEAPGGPV-AALSALFAEQKTFR 338 Query: 480 QYEFRVRAADNQ----FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 + AD+ HW + +P+ + +G + + G+ DIT+ ++ E I A Sbjct: 339 DVVVSITVADDAGRPATHWWALSAKPVHDLDGLFVGFRGVGADITQAREDQERISHLAHY 398 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D LT +PNR S L L D V+ +D+D +K +ND LG VGD +L+ + Sbjct: 399 DVLTQLPNRLSLLQNLGKAWMDHGRDKTSGCAVLCLDLDHFKGVNDSLGHPVGDALLMQV 458 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 R+ + ++ARL G+ F ++ ++ + ++ ++++ P ++L + + Sbjct: 459 ASRLRSCVGETGMVARLGGDEFAVVCAPSPGHEALSALSQSIVETLSAPYDILGHNVLIG 518 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCL 713 AS+G A +LKNA+LA+Y AK G F + +R ++ DL Sbjct: 519 ASVGIAVAPFDADDPDGLLKNADLALYRAKGDGRGAYRFFETAMDVWAQERRALEMDLRE 578 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+ EL L + P+I D E G EAL++W HP G + S+F+ AE+ +I I + Sbjct: 579 ALARDELKLFFQPLIGRRDNETTGFEALLRWQHPTRGLVPPSDFIECAEQWGLIGRIGEW 638 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +L R +W + + +N++ +L + ++A + + +P+R++L + Sbjct: 639 VLNEACRTAATWPSH-----LTVAVNLSPNQFASGDLVDQVRAALKASGLAPARLELEIT 693 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893 E +++ + ++ L L+ +G+ + +DDFGT S L+YL PFD +K + S + + Sbjct: 694 EGLLLHDSAKTLEQLAALKALGVKIAMDDFGTGYSSLAYLWRFPFDKIKIDRSFVAEMQD 753 Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ILR+I + + + + A+ + + + L M CD Q P+ I Sbjct: 754 NVAIADILRTIALLGQTLNLEVTAEGVETQAQARLLAEMRCDQFQGFLFGRPMPVGDIPS 813 Query: 952 LL 953 L Sbjct: 814 FL 815 >gi|269959455|ref|ZP_06173838.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835892|gb|EEZ89968.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 836 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 146/554 (26%), Positives = 268/554 (48%), Gaps = 13/554 (2%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + I G A+ + G N L H +DR+ Sbjct: 288 QLSLASKIFDNSHEGMVITDRKANILDVNSAFTHITGYAAEEVIGKNPNILRSGH-HDRE 346 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + +G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 347 FYQQLWRQL--ENKGQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 404 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR + L ++ + + +DID +K IND Sbjct: 405 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHA-FATLFLDIDHFKHINDS 463 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F IIL + + ++ D + Sbjct: 464 MGHFCGDQLLTKLAERLQDVLHLRAHVARIGGDEFVIILPNIESDSQLIDTIEDILCLFN 523 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P + + E + ++ S+G A + S +LKNA+ AMY AK G N + Sbjct: 524 RPFEVSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 583 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V ++ L A+E ++L+L Y P L E+VG+EAL++W HP G IS ++F+ Sbjct: 584 KSVSHVRMQSALHEAIEKNQLHLAYQPQYNLSANELVGVEALLRWQHPDLGMISPADFIP 643 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I++I ++LE+ +W D + +N+++ L ++ + ++ Sbjct: 644 IAEKTGLIQSIGKWVLEQACLQGRAWLDNGIEFG-KLAVNVSALQLQQSDFISKLGVILK 702 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + R++L +ES ++ +P+++ L LR++GI ++LDDFGT S LSYL +P + Sbjct: 703 ETGFPAHRLELEITESFLLIDPQQAIASLNLLRELGIEISLDDFGTGYSSLSYLKGLPIN 762 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ S AI+ +II M + + ++A+ I + + L GC Y Q Sbjct: 763 KLKIDRSFVSDVPSNTDSNAIVNAIIAMGQTLSLKVVAEGIETDEQAQYLFERGCIYGQG 822 Query: 938 SHVASPLGFNSILK 951 ++P+ + + Sbjct: 823 FRFSAPVRAEKLFR 836 Score = 40.3 bits (93), Expect = 1.5, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 51/194 (26%), Gaps = 7/194 (3%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 P W+ + + +I L + + T + Sbjct: 106 YCPVWLP-SGELFAALALVHPTEQDTVISGWLSALAGRVGFDVAQTYHKEQQRHDVQLPD 164 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + + D W T + + + G + Sbjct: 165 LLPSLQEFIDCLE---DHTWIKSTDGRYAMTNRSVEDSWQMTGSEIVGKND--FELFNSR 219 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 F + E + +N W+ P+ N G+++ +G+ ++ Sbjct: 220 RAKKFIDTDQLVIATGSQNTVEECTLIDDNNNPTWLETIKSPIRNQTGELIGILGMTRNV 279 Query: 520 TEQKKSLEGILCNA 533 T ++K +E L A Sbjct: 280 T-RRKMVETQLSLA 292 >gi|312136202|ref|YP_004003540.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Caldicellulosiruptor owensensis OL] gi|311776253|gb|ADQ05740.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caldicellulosiruptor owensensis OL] Length = 1016 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 145/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 SQ + + E+ V D+V++ DI + ++ + + + WL Y+ Sbjct: 446 SQVLEEEKEKYKFFVDNVSDLVFELDINQKKIELYGKLKDSFDVETICSTKSSLVWLEYL 505 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H +DR + ++ +FRV+ ++ W+ R + + + + + Sbjct: 506 HEDDRGKVFRKFQDAIFLGDEYVELDFRVKDKCGRWRWLSSRAHINYDEQKNPEKIVAVC 565 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D T +K+ I A+ D LTG+PNR+ F + L L + + V++IDID + Sbjct: 566 VDWTAKKEYENKIEYLAYYDTLTGLPNRKLFEETLEDWLKKTKA-EKSTGAVVLIDIDNF 624 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633 K IND+ G GD+ L +L ++ E LK AR+ G+ F II ++ +F Sbjct: 625 KDINDIYGHEAGDEYLKALGEKVSEYLKKLEVKTFFARVGGDEFAIIFHGLVKKEQVIEF 684 Query: 634 AIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + K I + +R + +AS+G + + E+ +N ++A+ AK G N Sbjct: 685 CAQLLKIFESEIYIESIDRHLFTSASMGISFYPDDGKNVKEIFRNVDMALSSAKDNGKND 744 Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F + ++ I+++L A+E + L Y P+I L D EI +EAL++W+ P Sbjct: 745 FQIFMPFMLMKNLKKIEIEKNLKKAIEEDQFELYYQPVINLKDMEIHSVEALLRWNLPGK 804 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S EF+ +AEE +I I ++E+ DI +W + I + IN++ + Sbjct: 805 GMVSPLEFIPVAEESGLIVKIGEMVIEKAFSDIKNWERKGIDY-INMAINLSVRQFKTKF 863 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + ++ LI + P +I +E+ + N + S +L L ++GI +DDFGT S Sbjct: 864 FVDVVKKLIERYSVDPQKISFEITETGAVENFDVSLKILNFLCQMGIKFMIDDFGTGYSS 923 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P VK + S ++ +++ AI+ I+ +A I+ ++A+ + + +++ L Sbjct: 924 LIYLRKLPIGGVKIDKSFISEIESSKESRAIVEGIVLLAHKIDLKVVAEGVETKKELEIL 983 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 +GCD+ Q + PL + KLL Sbjct: 984 KEIGCDFAQGYLFSKPLPKTEVEKLL 1009 Score = 67.7 bits (164), Expect = 9e-09, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 2/164 (1%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 N + L +I + TV+ + G + L + IV ++ Sbjct: 258 NRETILTFLFILAIIFFAVSLTVLIMIKINKRLEHGKRAYESYAQLLADNANAIVLTLNL 317 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + + G S + G W + R + L S + + +E Sbjct: 318 KGEIIYFNKFAEQLTGYTSEEVIGKK--WTDIFIPSHRREYIENLFSKIAEEKVLNDHEN 375 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + W++ + + + I D+T+ KK+ + Sbjct: 376 EIITKNGDIRWILWNNALIESPYLNEPLIISTGLDVTQIKKTQQ 419 >gi|113969504|ref|YP_733297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113884188|gb|ABI38240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 878 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 143/561 (25%), Positives = 268/561 (47%), Gaps = 15/561 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA + + V D + I G + + G R + H Sbjct: 323 EEQLTLATNVFKHTLEGVVITDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRH-- 380 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 ++ F + + + G+ E R D I I + + GD+ ++ + +DI Sbjct: 381 EKAFFDAMWNHLLE--TGKWNGEIWNRRKDGTIFPQNITISTIYDELGDVRYFVAVFSDI 438 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK+S + A+ D LT +PNR + +L L + N + + ID+D +K I Sbjct: 439 SAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRL-NAQLATVFIDVDLFKHI 497 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ L+ D+L+R+ G+ F ++ + A +R+ Sbjct: 498 NDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQ 557 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TAS+G + + + +L+NA+ AMY AK G N+ + S Sbjct: 558 VFEQPFVVSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTES 617 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L+ + +G+EAL++W+ P G IS Sbjct: 618 LTKQSFEHLKLQSALYGALEQNALYLMYQPKLDLVSRKTIGVEALLRWNDPILGQISPGV 677 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I I L++LE + W + P I +N+A + L + E ++ Sbjct: 678 FIPVAEKIGLIYDIGLWVLETACLQGVRWLAE-GKPFGRIAVNVAGQQLQRSSFVEDVKR 736 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T + ++L +ESV+M NP+ + L L +GI L++DDFGT S L+YL + Sbjct: 737 ILTQTGLPATCLELEVTESVMMHNPDVAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 796 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ I+A+ + + + LT+ CD Sbjct: 797 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIVLGHALKLEIVAEGVETQAQAEFLTQNLCDQ 856 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + PL + L + Sbjct: 857 AQGYLFSRPLLPADVEAFLAK 877 Score = 38.8 bits (89), Expect = 5.2, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 3/117 (2%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 +W + + L + G + F + Sbjct: 217 IWVKNTEGVYTICNHSVEKAWELPRSEIVGKTDE--DLFGKEIAEIFLNGDRLAIEAGTP 274 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + E N+ W+ P + ++G + IG+ +I++ K+ +E L A Sbjct: 275 IIVAECLDGEKQNKHLWLETLKIPATTADGALAGVIGMTRNISKHKE-VEEQLTLAT 330 >gi|138894279|ref|YP_001124732.1| sensory box/GGDEF family protein [Geobacillus thermodenitrificans NG80-2] gi|134265792|gb|ABO65987.1| Sensory box/GGDEF family protein [Geobacillus thermodenitrificans NG80-2] Length = 946 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 135/617 (21%), Positives = 269/617 (43%), Gaps = 16/617 (2%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + ++ R DI QP + ++ ++ + A + Sbjct: 342 AFAAVSLMEGAVSTQDRPTLDIPQPPEGITTLAQLMSTSSRDMERLHAR------LQMSE 395 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 +R + DIV+ D+ + P +LG + L Y+H +D Sbjct: 396 QRYKSLFEHNTDIVYSTDLHGHFTSVNPAFERVLGYRKEEILYTNS--LKYVHSSDIPRV 453 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + E + + ++ P+ +G + GI ++ITEQKK Sbjct: 454 TRYFYRALRGNVQTYDLE--IPTKSGERLLFQMKNIPII-VDGKKVGIYGIGHNITEQKK 510 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + E I A+ D T +PNR +++ + L + + + +ID+D++K IND +G Sbjct: 511 AEEKISYLAYYDPDTNLPNRTKWMELFSKQLKRAKQKQQ-KVVIALIDLDRFKWINDSVG 569 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GDD+L L R+ +L L R G++F ++ + ++ + A+ + + ++ P Sbjct: 570 HYAGDDILRQLVERMKRVLPAGAQLGRFHGDKFCLLFPLKTSAGAATETALQLVREVSKP 629 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 ++E +TASIG A + +L++A++AM AK GGN VE + Sbjct: 630 TVYSQKEFFITASIGLAVFPDDGADEHTLLRHADMAMNSAKKSGGNRVERYCAQMNEEAV 689 Query: 705 VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ D L AVE +EL+L Y PI+ + ++ EALI+W +P+ G + EF+ +AE Sbjct: 690 HRLEMDSYLRKAVEKNELFLCYQPIVNVRTGAVIATEALIRWRNPQLGLVRPDEFIPLAE 749 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E I I ++L+ + W++ + I +N+++ + ++ + ++ Sbjct: 750 ETGWIHEIGRWVLQTACQQTKRWQEMTGNDKLAIFVNVSAVQFQHERFVDDVKRALKQSN 809 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 SPS + L +E ++ + + L LR++G+ + +DDFG+ S YL +P +K Sbjct: 810 LSPSCLHLELTEHSMLRHLSSTMRTLDELRRLGVGIAVDDFGSGYSSFHYLKQLPATILK 869 Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + AI+ ++I M + + +A+ + ++ L + C Y Q + Sbjct: 870 IDRAFIEHLHANASDAAIVSAMITMGRGLGLETVAEGVETLEQLERLRDLQCSYAQGYAL 929 Query: 941 ASPLGFNSILKLLKERF 957 PL + + + Sbjct: 930 CPPLMAEEVTPYVAGQQ 946 >gi|325291024|ref|YP_004267205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Syntrophobotulus glycolicus DSM 8271] gi|324966425|gb|ADY57204.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Syntrophobotulus glycolicus DSM 8271] Length = 723 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 146/554 (26%), Positives = 266/554 (48%), Gaps = 11/554 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 L + S D VW + + + I W IH +DR++ Sbjct: 167 LELIMRSSCDRVWYLKRNTGEKELAGRFLNVC----STENITIEEWEHRIHPDDREHVCK 222 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + F + E+RVR+ D + W+ R S+ NG G+ DI K Sbjct: 223 LFNEFFNGKTEDYYDEYRVRSEDGSYKWIRSSGRSYSDQNGKPSILAGMHIDINNLKVHE 282 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + A+ D+LT +PNR+ F DRL L + N + V+ +DID +KKIND +G Sbjct: 283 DQLAYIAYHDSLTSLPNRKLFFDRLDITLKKAKRL-NEKVAVLFLDIDNFKKINDSMGHD 341 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD++L RI ++ D LARL G+ F + + + + +I ++ P Sbjct: 342 CGDEILRQSAHRISSNIRDYDTLARLGGDEFVLSFQNASCNEEILALTKRVKDCFLKPFV 401 Query: 647 LLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 L + + ++ SIG + + +T E+LK A++AMY AK G N V F + + Sbjct: 402 LGKNSVVHLSCSIGISVFPDHGVTKEELLKYADMAMYKAKESGKNTVRIFSFAIAEEVLL 461 Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 +++ L A+E E L+Y P + I G+EAL++W++P G++ +F+ +AEE Sbjct: 462 KFNMEKGLRKALEKEEFELIYQPQYDIETGRIRGVEALLRWNNPFKGHLEPVDFINVAEE 521 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++++ W+ + + + I +NI++ L + ++ + ++ ++S+T Sbjct: 522 TGLIIPIGEWVIKKACETAKKWKSEYDFQGM-ISVNISATQLRNGDIVKAIKDILSETEL 580 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 SPS +++ SE+ + + L + L+K+GI ++LD+FG S L YL +P +K Sbjct: 581 SPSSLEIEISENTFADCLDETILKMIELKKMGIKISLDNFGKGYSSLGYLRRLPIHVLKI 640 Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + I+ SII +A++++ +IA+ I L + C +IQ + Sbjct: 641 DKSFVEEINPGYQGKKIVSSIISLAQDLDIDVIAEGIETSEQYDYLKKARCGFIQGHFTS 700 Query: 942 SPLGFNSILKLLKE 955 P+ I +L+K Sbjct: 701 KPISEELIGELIKR 714 >gi|90021239|ref|YP_527066.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] gi|89950839|gb|ABD80854.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] Length = 823 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 148/570 (25%), Positives = 268/570 (47%), Gaps = 16/570 (2%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 ++ + R + ++ + + + I G G + + Sbjct: 251 LAKENEALVVSESRFRTLAESAPIGIFLRNENFETLYVNDRWCAITGQPHG---CSRQEY 307 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNG---- 507 L I D N+ +++ G+ E+R RA H ++ + P+ G Sbjct: 308 LKSISDYDLRNYEGMIEGLRSGSVGQ-TIEYRYRAPGRLNDHILMEYVTPLEVKEGVSGE 366 Query: 508 -DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + Y+G D+TE K + + A+ D LT +PNR+ F D L L L+ +D++ Sbjct: 367 HQVRGYVGSVLDVTELKNAQHELEKLAYYDPLTHLPNRRYFKDYLVKQLQLAKEEDSI-M 425 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+++D+D +K+IND LG GD +L L RI + L D++AR+ G+ F ++L + ++ Sbjct: 426 AVLLVDLDNFKRINDTLGHDAGDILLSVLAGRIKQRLHSQDLVARMGGDEFYLVLRNLSS 485 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ +R +A PI + + +TASIG AS+ + T E+++NA++A+Y AK Sbjct: 486 LAEVEKITKRVRSVLASPIRIKNHFVEITASIGVASYPENCDTPEELMRNADIALYKAKG 545 Query: 687 RGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N V F S D++ ++ L AV + P + E LI+W Sbjct: 546 DGRNRVAYFSAELDSQLRDKMRLESKLRQAVSCEAFEIYIQPQYDYKTSKFRWAEVLIRW 605 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASK 803 + P+ G I +F+ +AEE +I I+ ++L + + I + +N++++ Sbjct: 606 EDPEEGFIPPDKFIKLAEETGIINDIDQWVLRATCKLWAEHGEALRAIGIEGVSMNLSAR 665 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L ++A+ + +PS I +ES+V+ N E + + RLR IG +++DDF Sbjct: 666 QFYSKTLFAYVEAVFEEYGINPSCISFEITESMVIENIEGAIETMERLRNIGSRISIDDF 725 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D++K + S + +AI +II MA+ + ++IA+ I + Sbjct: 726 GTGYSSLSYLKRLPIDSLKIDRSFIMDIPGDTNDVAITSAIIAMAEKLNLSVIAEGIETK 785 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + L GC ++Q + A P + LK Sbjct: 786 EQCEFLVEQGCFHMQGYYFAKPAPVRTFLK 815 >gi|89899270|ref|YP_521741.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89344007|gb|ABD68210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 1037 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 152/611 (24%), Positives = 255/611 (41%), Gaps = 15/611 (2%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 IG + + + + I + ER A Sbjct: 433 VIGAFTLYAGEACAFDEAAQNLLLEMALDISFALDRFADERERKIMQDDLRDSEERYRKA 492 Query: 411 VLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTIL 468 S D V + V I G + G L + DR L Sbjct: 493 FQTSPDAVNITRLVDGLYVDVNTGFERITGWRHDEVVGKTATELNLWGNPADRMRLVDAL 552 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 S R L+ F + ++ + + + + I DITE+K + Sbjct: 553 QS--EGRCNNLEATF--VKKNGDIFHGLMSAEKVRFKD--VDCILSITRDITEKKLAEAQ 606 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 I A D LTG+PNR DR L L+ + + +M +D+D +K IND LG +VG Sbjct: 607 IQQLAHFDQLTGLPNRSQLHDRFRYALSLAQRHGD-QLAIMFLDLDHFKNINDTLGHSVG 665 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +LV ++RR+ L+ D L+RL G+ F ++L + + + A + ++A P + Sbjct: 666 DQLLVDVSRRLKAALREEDSLSRLGGDEFILLLPG-TDEAQASQVATKLLAAVAQPCQIE 724 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706 + E+ T SIG A + + + KNA+ AMY K N F + Sbjct: 725 QNELVSTVSIGIALYPNDGQDFETLSKNADAAMYRVKQASRNDFRFFTQEMQTHSARTLQ 784 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 + L A+ E L + P + L D IVG EAL++W HP+ G IS +EF+ IAE+ Sbjct: 785 LVNALRHALPRHEFELHFQPQVALQDGHIVGAEALLRWRHPELGMISPAEFIPIAEDSGQ 844 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I AI ++L R + W D P+ I +N+++ L + ++ + P Sbjct: 845 ILAIGEWVLRTAVRQLKQWLDAGLR-PMVIAVNLSAVQFRHPNLMALVTRILDEAALPPE 903 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +E+ M +P + ++ +L + GI +++DDFGT S LSYL + +K + S Sbjct: 904 FLELELTEAAAMDDPPAAIAIMNKLDEHGIRMSIDDFGTGYSSLSYLKKFKVNKLKIDQS 963 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + AI+ +II +A ++ IA+ + + L GCD +Q +V+ PL Sbjct: 964 FVRDISDDPDDKAIVTAIINLASSLGMHTIAEGVETASQLAFLRLQGCDEVQGYYVSKPL 1023 Query: 945 GFNSILKLLKE 955 + ++ Sbjct: 1024 PKDQFEAFVRN 1034 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 67/211 (31%), Gaps = 37/211 (17%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQ----------GIFSDGERQSLAVLGSGDIVWDW 421 V L +L+ ++ Q A ++ + + +R + D++++ Sbjct: 145 VALAALFSVLLAYSAKQAGAARVRANELQVDVNAQAVELVALNQRLQSTLDALPDLLFET 204 Query: 422 DIVRDRV-TTTPDIATILGLASGSMHGPIRNW--LPYIHINDRDNFRTILDSFVGYRRGR 478 D+ + +P + +LG + L +H Sbjct: 205 DMDGRYLAYHSPR-SELLGKTLHRVLPVAVADICLAAVHE-------------ANAVGYS 250 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + ++ D HW + GD +I ++ DITE+KK+ I L Sbjct: 251 HGKQIQLALPDGA-HWFELSASRKPGLPGDAPTFIVLSRDITERKKAEIKIER------L 303 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 T + + L + + + L P + Sbjct: 304 TKLY---AALSQCNQAIVRCSDASELFPIIC 331 >gi|117925669|ref|YP_866286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117609425|gb|ABK44880.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 1070 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 145/594 (24%), Positives = 280/594 (47%), Gaps = 11/594 (1%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 ++ L G V + + + + + + + D V D+ Sbjct: 465 VRTVLQLGDVERSASGEPVRMTGTVQDITDLKRTQENLDLAKYILDTTSDAVIITDVNNR 524 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRV 485 + I G + + G +H ++ + F + + + GR E Sbjct: 525 IIDVNHAYTKITGFSRDEVMGQNP---QVVHNEEQGEAFYSRIWQSLLQE-GRWSGEVWE 580 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R + + + + +R M N G+ ++G+ DI+ QK + E + A+ D LT +PNR Sbjct: 581 RRKNGELYPKWMTMRRMLNQYGETAFFVGVFVDISTQKATEEQMERLAYYDPLTKLPNRA 640 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F +RLT + + V+++D++++K IN+ G VGD +L+ + RI E L+ Sbjct: 641 LFHERLTQSITTAKRYKR-HVGVVMLDLNRFKLINESYGYGVGDGLLIQVAERIVERLRE 699 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 DI+AR+ + F I L+ +I A + K MP + E+ + ++G + + Sbjct: 700 SDIVARIGADTFAITLVDLKQEGEITGVANNLLKQFVMPFLVNGHELMLRTAMGIVLYPT 759 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLV 723 + +L++ E A+ AK +G N+ + +S+ + R+ +++++ A+E + L Sbjct: 760 DGQDAETLLRHVENALGQAKQQGVNNYRFYSEEMSNISNKRLALEQEMHTALEQRDFVLY 819 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P + L + G+E+LI+W H + G IS EF+ +AEE +I + L++LE + Sbjct: 820 YQPKVNLQRGVVSGVESLIRWQHKQKGMISPVEFIPVAEETGLIVPMGLWILETACAEAK 879 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 D P + +N++++ L E + ++ + PS ++ +ES++MGN E+ Sbjct: 880 RITDYLGQ-PFTVAVNLSARQFQSRNLLESISETLNNSAIDPSMLEFEITESMMMGNVEK 938 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 S L +R +G++L +DDFGT S LSYL P +T+K + S + AI+ + Sbjct: 939 SIETLVAIRNMGVTLAIDDFGTGYSSLSYLKRFPINTLKIDQSFIRDLGVDSDDAAIVSA 998 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 II MA+++ ++A+ + L GC+ +Q + + PL + +LLK+ Sbjct: 999 IISMAQDLNLHVVAEGAEKAEQVLFLKERGCETVQGYYFSRPLPQTDLERLLKD 1052 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 9/161 (5%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + A +G W W++ D + +I +L + + Sbjct: 365 EQKQAELKLLESRHHLDRAQRLAGLGYWSWNLQGDEQFWSEEIYRMLHRPRAHVSASFES 424 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 ++ ++H +DR R ++ + + E R+ +D ++ +++G+ +R Sbjct: 425 YMDHVHPDDRQRVRDMVARVLKEPDLFFRVEHRIVRSDGNVRTVLQLGDVERSASGEPVR 484 Query: 512 YIGIANDITEQKKSLEGILCNAFQ------DNL--TGIPNR 544 G DIT+ K++ E L A D + T + NR Sbjct: 485 MTGTVQDITDLKRTQE-NLDLAKYILDTTSDAVIITDVNNR 524 Score = 86.2 bits (212), Expect = 3e-14, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 4/201 (1%) Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 E A++ A + + + +R I L+ G L+V+ G+ +Q G Sbjct: 183 EMALMGFTAVPDLGWGVVVHYRLSYQRKPFLRIAWGLLLGSALVVVFGGWLFMQ---VGG 239 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 G+ R LA+ S +W+WD+V +V + I L G+ G +L Sbjct: 240 PLISGLERYQARLGLAMAASRIGIWEWDVVTGKVEWDEGMHQIFDLPKGAFDGTWEGFLA 299 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D + + R + E R + + +R +G IG Sbjct: 300 LFDGEDSARLEQCRQESLTEQL-RFELECRTQPVAGVQKTLSLRGELRMPEHGVEAHLIG 358 Query: 515 IANDITEQKKSLEGILCNAFQ 535 DI+EQK++ +L + Sbjct: 359 ACWDISEQKQAELKLLESRHH 379 >gi|320105704|ref|YP_004181294.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Terriglobus saanensis SP1PR4] gi|319924225|gb|ADV81300.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Terriglobus saanensis SP1PR4] Length = 649 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 152/576 (26%), Positives = 268/576 (46%), Gaps = 18/576 (3%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + V + ER LA + + VWD D++ D++ + I+GL + Sbjct: 60 LSDVTEQRSLDLELRKVEERYRLAARSTTEGVWDRDMLTDQIYYSARWQEIVGLPAVDFI 119 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G +W +H D + + E+R+R D + W+ + + Sbjct: 120 GTSADWENRVHPKDLLLGQQAQREMEEQNTLEFRTEYRMRHEDRGWIWVRNEGIIIRDQE 179 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 R +G +IT +K LTG+PNR S ++++ +++ + + Sbjct: 180 NRPTRKVGSMKEITSEKSIE----------PLTGLPNRASSVEQIDHRMEMPSK-EQATF 228 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP--DILARLSGNRFGIILISE 624 V+V+ +D + +IND G A GD +L+ + RR+ ++ I R++G+ F ++L Sbjct: 229 AVIVVGLDVFNRINDSFGRASGDAILIEIARRLDSTIQKDPLSIAGRITGDEFVVLLGRI 288 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 +A ++ ++ PI + +T++ASIG A ++ ML++AE+AM+ A Sbjct: 289 AGVDDAITYANLLQHVLSTPIEHQHQFLTISASIGIAMGDEGYHSAETMLEDAEVAMHQA 348 Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G F + RV ++ DL A + +E L Y P + L ++VG EAL+ Sbjct: 349 KRAGKAQCILFGAHMRERTRRRVELETDLRGAFQRNEFILHYQPKVLLETGKLVGFEALV 408 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIA 801 +W HP G IS +EF+ AEE +I I + L R WRD P + + +N++ Sbjct: 409 RWQHPVKGMISPAEFIPYAEETGLIIDIGRWTLRNAIRQAKVWRDSGLVAPDVTMAVNLS 468 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 +K L + +++ + + L +ES +M N ++ L LR +G+ L LD Sbjct: 469 TKQFERPGLIAEIAKKLAEEDFPADCLTLEVTESALMDNIAGAKKSLDGLRSLGVHLDLD 528 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL +PFD++K + S + +++ AI +SI+ + + + T+IA+ I Sbjct: 529 DFGTGYSSLSYLNRLPFDSLKIDQSFVHELTDSQESKAIAQSILQLGRTLNMTVIAEGIE 588 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L ++GC Y Q + PL I +LL Sbjct: 589 TAEQSLLLMQVGCLYGQGYLFSKPLDAEGIRELLTA 624 >gi|119896913|ref|YP_932126.1| putative signaling protein [Azoarcus sp. BH72] gi|119669326|emb|CAL93239.1| conserved hypothetical signaling protein [Azoarcus sp. BH72] Length = 815 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 160/691 (23%), Positives = 308/691 (44%), Gaps = 18/691 (2%) Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 R + + + ++ + I LA I+L + + + Sbjct: 134 RRPLLLERNEVGFLQFGVSVSVLAAARQAIIQQGTLIALAEILLTFILLSGIGYLLTHNL 193 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI--VILIGFTVIQHVLATG 394 LL + + LD+ + + L ++ T+ Q V Sbjct: 194 GRLLAGSRAI-----------AEGHLDHRLPEKGEDELARLARNFNVMAATLQQRVGELQ 242 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + ER +LA+ G+ D +WDWD+ +V + I+G Sbjct: 243 RTALQLRTSEERYALALRGANDGLWDWDLPTGQVYFSERFCEIVGRDMSGFSNAQDALAS 302 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 Y+H ++ + +R ++ + + + E R+R D + W++ R ++ G R G Sbjct: 303 YLHPDELETYREVMRAHLRGESAQFMLEHRIRQGDGKVRWVMTRGVAQRDAGGRATRMAG 362 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 +DI +K++ + ++ +A D LTG+PNR F++ + L D+N R V+ I+I+ Sbjct: 363 SISDIDLRKRAEQQLVHDALHDGLTGLPNRALFIEHVQQALGHQRRDENARFAVLAINIE 422 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++ IND G A GD++L + I ++ D+ AR+ G++F ++L + S + A Sbjct: 423 RFSLINDSFGHAAGDELLRRVAEHIVASMRAGDVAARVGGDQFALLLNGIDGSTEALRVA 482 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 ++ + + R + + IG A + + +L++A+ A++ A+ + VE Sbjct: 483 ESLVELPGLSAPAAGRPLHLRCRIGVAVSDIERDDAEALLRDADNALHKARRDQADPVEF 542 Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + + + ++ DL A+ L + Y PI+ L D + EAL++W HP G + Sbjct: 543 FHASMHTQAVRALQLEADLRTALRIGGLTVHYQPIVALGDRRLTSFEALVRWRHPTHGLL 602 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELC 811 EF+ +AE L +I + + +L + RD++ W + + +N++++ L L Sbjct: 603 PPLEFIPLAETLDLIHDVGMRVLTLVCRDLLEWGIAYPGRALPSVSVNLSARQLSRPNLA 662 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + +I S ++ +ESV+ ++ +L +LR+ G S+ +DDFGT S LS Sbjct: 663 DELLDVIESHGVPISCLRFEVTESVLADPDGPAKPVLHQLREAGASVLIDDFGTGYSALS 722 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL IP D VK +G+ + T+ I+R I +A ++ ++A+ I E L Sbjct: 723 YLHTIPCDIVKLDGTFVRSITQDSRLRDIVRRSIQLAHDLGIAVVAECIEHEDQASVLYG 782 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 M CDY Q + PL + +LL P Sbjct: 783 MDCDYGQGYLYSRPLEADDARRLLAPSNPGT 813 >gi|91224928|ref|ZP_01260187.1| hypothetical protein V12G01_10918 [Vibrio alginolyticus 12G01] gi|91190174|gb|EAS76444.1| hypothetical protein V12G01_10918 [Vibrio alginolyticus 12G01] Length = 815 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 148/554 (26%), Positives = 258/554 (46%), Gaps = 13/554 (2%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + I G S + G L H + Sbjct: 267 QLSLASQIFNNSQEGMVITDRNANIIDVNTAFTQITGYRSEEVIGKNPRILRSGHHD--Q 324 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F L + + G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 325 GFYQQLWHQLENK-GQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR L L ++ + + +DID +K IND Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLLSLLEQHIETGHKNQQT-FATLFLDIDHFKHINDS 442 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F IIL ++ + + + + Sbjct: 443 MGHFCGDQLLSKLAIRLQDVLHLNAHVARIGGDEFVIILPDIHSDVALLETVGDILSVFQ 502 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P +L + + V+ SIG A + S +LKNA+ AMY AK G N + Sbjct: 503 QPFDLANHDSLRVSTSIGIALYPRDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V I+ L A+E +L L + P L IVG+EAL++W HP++G + ++F+ Sbjct: 563 KSVSHVRIQSALHQAIEKQQLRLEFQPQYNLEQNTIVGVEALLRWQHPEFGPVPPADFIP 622 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I++I ++L++ +W DQ I +N+++ L + + + ++ Sbjct: 623 IAEKTGLIQSIGEWVLQQACLQGNAWLDQGIEFG-KIAVNVSALQLQQSNFIQRLSTILD 681 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 T Y R+ L +ES ++ +P+++ L +LR++GI ++LDDFGT S LSYL +P + Sbjct: 682 NTGYPAQRLDLEITESFLLIDPQQAIASLNQLRELGIEISLDDFGTGYSSLSYLKGLPIN 741 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ S AI+ +II M K + ++A+ I L GC Y Q Sbjct: 742 KLKIDRSFVSDVPSNSDSNAIVNAIIAMGKTLSLKVVAEGIETREQADYLFEKGCIYGQG 801 Query: 938 SHVASPLGFNSILK 951 + P+ + + Sbjct: 802 YLFSQPVSAGKLFR 815 Score = 45.3 bits (106), Expect = 0.048, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 7/187 (3%) Query: 350 WFIGLWMAITKR-LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + + +T + ++ L I I Q + Sbjct: 93 GELLAVLTLTHPNDQSTVVSAWLSAIAGRISFDINLHCQQEQTRHQSAEIKPTPTLQEFI 152 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + D VW + T + + + G + + F Sbjct: 153 DCLE---DHVWIKGMDGLYSMTNRSVENAWQKTNSEIIGK--DDFALFSHERAEKFIDAD 207 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 V + E R +N W+ P+ + G+++ +G+ +IT ++K +E Sbjct: 208 KLVVATGTQNIVEECRQIDENNNPTWLETIKSPVRDHAGNLIGILGMTRNIT-RRKMVET 266 Query: 529 ILCNAFQ 535 L A Q Sbjct: 267 QLSLASQ 273 >gi|229181548|ref|ZP_04308874.1| Sensory box/GGDEF [Bacillus cereus 172560W] gi|228601916|gb|EEK59411.1| Sensory box/GGDEF [Bacillus cereus 172560W] Length = 909 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 343/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 52 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L + Q L T Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLFAQMQFNSELEKQIKLRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R +++ + P+ I Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKSRDIYYLHVTAVPIFLKE-KISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 577 KIADRIVTAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 756 LIESISQILNDVQVDPKYVTLELTERIAMVDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|304311536|ref|YP_003811134.1| hypothetical protein HDN1F_19060 [gamma proteobacterium HdN1] gi|301797269|emb|CBL45489.1| Hypothetical protein HDN1F_19060 [gamma proteobacterium HdN1] Length = 916 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 146/582 (25%), Positives = 252/582 (43%), Gaps = 13/582 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +I+ + A + S ++ + ++ + Sbjct: 326 GIIEDITAHKQTEERSLQSESTLRQIFDTSNAGIFLVNKEGIITLANRRMSELFHCPHEQ 385 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G ++ +IH +DR+ + + + + E D W + R N Sbjct: 386 LIGSK--YVAHIHPDDREAGQQKMLDLIASEIDSVDLERLYWREDGSQFWGNLCGRRFKN 443 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 ++G +G+ D+T++ ++ E I AF D LT +PNR+ LDRL + SA L Sbjct: 444 ADGTTAGLLGLIMDVTDRHQAEEEIRTLAFYDPLTQLPNRRLLLDRLQQGMTASARSQ-L 502 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 ++ ID+D +K +ND LG VGD +LVS+ RR+ ++ D +ARL G+ F ++L Sbjct: 503 HGALIFIDLDNFKSLNDTLGHDVGDQLLVSVARRLQTCVREGDTVARLGGDEFIVMLTEI 562 Query: 625 -----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 ++ + ++ P ++ E+ T S+G A + + EMLK A++ Sbjct: 563 HGTTNDSISIAETIGHKIISALNKPYSIGTHELRSTPSLGIALFLGHDTSVDEMLKRADM 622 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G N + F ++ +L A+E E L Y P I + G Sbjct: 623 AMYQAKAVGRNTLRFFDPQMQARVNARAHMEAELYRAIEQQEFMLFYQPQIN-ATGDCTG 681 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 +EAL++W IS ++F+ IAEE I AI +++ R W+ + + Sbjct: 682 VEALLRWQPTAQSMISPAQFIPIAEETGQIIAIGGWVVLEACRQQAIWQKNPETRHLNVA 741 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 INI++K + + I +T P IKL +ES+++ + + + L +GIS Sbjct: 742 INISAKQFQHSSFVHDLHEAIQQTGADPKHIKLELTESILLADIREATQKMATLGGLGIS 801 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 ++DDFGT S LSYL +P +K + S + AI ++II + K + ++IA Sbjct: 802 FSVDDFGTGYSSLSYLKLLPLQQIKIDQSFVRDILNDPNDRAICQAIIALGKALGLSVIA 861 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + + K L GC Q A PL L + Sbjct: 862 EGVESSPQWKMLLSDGCSEAQGYLFAMPLPAKEFTTWLNTKN 903 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 90/290 (31%), Gaps = 27/290 (9%) Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDND--IIQPALVGGLVLIVILIGFTVIQH 389 KG A L I +L+ + L + L G L+ +++ I QH Sbjct: 16 KGTAGARLTIATPLLLSVIASLLLFPSQGDQAEARLVWIVLLCGSLMSLLLWITLRSHQH 75 Query: 390 VLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVR--DRVTTTPDIATILGLASGSMH 446 + + S + V + + G Sbjct: 76 YRRELEAQHAELQKSHDDFSALIASIPGTVIRCKTAPSWQVLYMNGERDISTGQPVNRFL 135 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + +H +D + + E+RV D + W + R ++ Sbjct: 136 SGELTYRELVHPDDMPRIDRAVRRASAADHA-YELEYRVLHVDGNWRWASLNGRFEYDAQ 194 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G ++ G+ D TE+ + + + + + L + ++ P Sbjct: 195 GRPEQFEGVIFDTTERHLAQQEL---------------RELTEHLPVAIYHYQLKEDGTP 239 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 ++ I D ++I +GI + +++ + I +++ D A + +R Sbjct: 240 RLIYIS-DNVERI---MGIPAAE--MIASSANIYDIVHPEDREAFIEADR 283 >gi|217975002|ref|YP_002359753.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217500137|gb|ACK48330.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS223] Length = 1490 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 139/563 (24%), Positives = 264/563 (46%), Gaps = 12/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + A + + V D+ I+G+ S + G + Sbjct: 925 QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSTDLVGQSFTQFVQM 984 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D + + + E + A Q + + + M ++NG + Y+ + Sbjct: 985 N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1039 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K++ + A D LTG+PNR F RL + + + ++ +D+D++ Sbjct: 1040 SDITERKQTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1098 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV + R+ + +L R G+ F I+L + N+ I A Sbjct: 1099 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDDINHIAER 1158 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + + I P L RE ++ SIG + W + +KNA+LAMYHAK G + + + Sbjct: 1159 LLEQIVAPFKLYGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1218 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753 ++ + ++ DL A+E E L Y P I + +++++G+EALI+W HP G I Sbjct: 1219 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1278 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AE +I I+ ++L + W + + +NI++ + E Sbjct: 1279 PDIFIKVAEACGLIVDIDRWVLRQACVQGAQWAKRYGAT-FKLSVNISAVHFRQPDFIED 1337 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q ++ +T + + L +E V+M ++ L RL+ +GI + +DDFGT S L+YL Sbjct: 1338 IQRILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1397 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + +T+K + S + AI+ SII +A+N++ ++A+ I ++++ G Sbjct: 1398 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1457 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 C IQ + A P+ + L+ Sbjct: 1458 CYIIQGYYFAKPMCVADFERYLE 1480 Score = 104 bits (260), Expect = 7e-20, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ +I + + + + + +Q + +R ++ GS +W+W Sbjct: 775 LLLLFSIIALSLAWYRQRQINTFKQMNQALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 834 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +LG + + + +H DR+ DS + R + E+R + D Sbjct: 835 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 891 Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP++ + +I R GI +DIT Q++ + + A Sbjct: 892 NWGWLRVRGRPVARNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 936 >gi|297537382|ref|YP_003673151.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297256729|gb|ADI28574.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 765 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 145/566 (25%), Positives = 258/566 (45%), Gaps = 20/566 (3%) Query: 407 QSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDN 463 S+A S + + D + I G + + G R + H + + Sbjct: 194 LSIAATAFESHEGILVTDANNVILRANQAFLKISGYSEEEVIGQSPRLFRSGKH--EVNF 251 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 F + +S G + E + + + + + + I + +NG + Y+ DIT K Sbjct: 252 FDALWNSI--NNTGMWEGEIWNKRKNGEVYPVHLTITAVKANNGKVTNYVSTLTDITVSK 309 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + + I AF D LT +PNR+ +DRL L SA R ++ +D+D +K +ND L Sbjct: 310 AASDEIQRLAFYDPLTQLPNRRLLVDRLNQALANSARSGQ-RGALLFLDLDHFKTLNDTL 368 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMR 638 G +GD +L R+ ++ D +AR+ G+ F + + + ++ + + + Sbjct: 369 GHDIGDLLLEQTATRLLACVREGDTVARIGGDEFVVFIENLSDQPFDAAAQAEIVGEKIL 428 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + +P L +SIG + S++ E+LK A++AMY AK G N + F + Sbjct: 429 NELNLPYLLSSHRYFNASSIGITLFNGSELELEELLKQADIAMYQAKKAGRNTLRFFDPN 488 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ DL A+EN E L Y + D +G EALI+W+ PK G +S Sbjct: 489 MQEVINARVELERDLRQAIENKEFQLYYQLQVDG-DGRSLGAEALIRWNQPKRGLVSPFN 547 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I ++L+ + +W + + IN++++ + +Q Sbjct: 548 FIPLAEETGLILPIGQWVLDAACSQLKAWEQNPLTNHLSLSINVSAQQFKQADFVSQVQT 607 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + +P+ +K+ +ES+++ N E + + L+ IGI LDDFGT S L YL + Sbjct: 608 SVQHHAINPNLLKIELTESMLLDNVEHIIITMVALQAIGIRFELDDFGTGYSSLQYLKKL 667 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + TE AI+R+II MA+ + +IA+ + + + L GC++ Sbjct: 668 PLQQLKIDQSFIQDITEDSSDQAIVRTIIAMARGLNIDVIAEGVETDNQLAYLRNYGCNH 727 Query: 935 IQDSHVASPLGFNSILKLLK--ERFP 958 Q P N LL+ R+P Sbjct: 728 FQGYLFGRPAPINEFETLLESSRRYP 753 >gi|146278220|ref|YP_001168379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhodobacter sphaeroides ATCC 17025] gi|145556461|gb|ABP71074.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides ATCC 17025] Length = 832 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 143/585 (24%), Positives = 254/585 (43%), Gaps = 21/585 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F +++ V + R + ++W D+ V + + G + Sbjct: 244 FGILEDVHERHLSLDHLRESEARFRAFADDAPVMIWVTDVEGHNVFVSRSWLKVTGQSPE 303 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 W IH DRD I +S + RR EFRVR D + W+I +P Sbjct: 304 EAVN--EGWAAVIHPEDRDAVVAIWESALR-RRVPFTNEFRVRRQDGSWCWVIDVGQPRV 360 Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556 ++G + YIG DI+ ++++ + + A D LTG+PNR F D + Sbjct: 361 LADGTFIGYIGCCVDISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYEEAV- 419 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 +A V ++D+D +K +ND G VGD VL + R+ ++ D +ARL G+ Sbjct: 420 -AALAGGRSVAVHMLDLDGFKAVNDTRGHPVGDQVLRQVADRLRTSVRSTDTVARLGGDE 478 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +I + D A + +++ P N+ V AS+G A ++ E+++ Sbjct: 479 FAVIQTPVRTEQEACDLARRLIAAVSKPFNIDGTVPEVGASVGIAFARGRGDSAEEVMRF 538 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G F R +K L A+ EL + Y P+I L D Sbjct: 539 ADVALYAAKQAGRGTFRVFDEATDIHLQSRQKMKSALRAALGQGELSVFYQPLIGLADGR 598 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + EAL++W G I+ +F+ +AEE +I + ++L W D + Sbjct: 599 VTACEALMRWHRKGAGWITPDQFIPVAEEAGLIGVMGEWVLHEACAHAARWPD-----NV 653 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ L + + + + + P R++L +ESV++ +R+ +L LR + Sbjct: 654 SLAVNLSPLQFHGGGLVDVVVSALRASGLPPERLQLEITESVLLDPTDRNITVLQELRAV 713 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912 G+ + +DDFGT S L YL PFD +K + S + R AIL+++ + ++++ Sbjct: 714 GVKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPHAREALAILKAVAGLGRSLDMR 773 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + + + + G D Q + PL +I + R Sbjct: 774 TTVEGVETQAQLDCAIAEGVDEAQGFFFSRPLPAPAITSFISGRL 818 Score = 93.5 bits (231), Expect = 2e-16, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 74/248 (29%), Gaps = 16/248 (6%) Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI---- 345 + + + + A+ L G +E L AW+ Sbjct: 23 WVALFDGVAHPVLIKNSESRVIFMNSAACELLGCQRGELEGRAEHELVGGLTAAWLHDLD 82 Query: 346 --LIFIWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 + + + + + G L+V T ++ + + Sbjct: 83 AEAMLSGSLTVEQVVPGPAGLRRFLVSRKPAGEHLVVTFFEITELRRT------EEALRE 136 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + + + + + + + GL + + +W +H +DR Sbjct: 137 REAHLRGLLDLNPLVPFSISPDGTLSDISDRLVDLTGLPRDT--SHVDDWWAAMHPDDRP 194 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 R V G E R+R D Q+ W R+ + G I R+ GI D+ E+ Sbjct: 195 ELRAAWAQAVR-DGGSFDAEHRLRMPDGQYRWFRARVVARRDEEGRIDRWFGILEDVHER 253 Query: 523 KKSLEGIL 530 SL+ + Sbjct: 254 HLSLDHLR 261 >gi|114319238|ref|YP_740921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114225632|gb|ABI55431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 857 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 145/580 (25%), Positives = 252/580 (43%), Gaps = 14/580 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 VI A E+ L GS D + D + P I G Sbjct: 278 AVIALFAARAGTELARHQAEEQLQLIDQVFEGSRDAIIITDAQTRILQVNPAFEAISGYR 337 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G L H F + + R G Q E R AD + + ++ + Sbjct: 338 EEELVGRTPRLLQSGHQG--PRFYREMWEALKSR-GHWQGELWNRRADGETYPSLLSVSA 394 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 ++N N ++ YIGIA+DIT K + + I A D LTG+ NR+ L L Sbjct: 395 VTNDNDEVTHYIGIASDITSHKAAEQHIDYLAHYDTLTGLGNRR--LLEEELERMLRNAR 452 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + +D+D++K IND LG GD +L + R+ +L L R+ G+ F I+ Sbjct: 453 GGRPFALFFLDLDRFKNINDTLGHESGDRLLEEVADRLRDLAGPQATLCRIGGDEFAILA 512 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 ++ A + + I+ P + ER + VT S+G A ++ A+ A+ Sbjct: 513 PGLSHRQTA-GIARQLVEGISRPYEITERPLVVTCSVGVAVHPRDGTRREALISAADTAL 571 Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 ++ K G NH + ++R+ ++ DL A+ E L Y P++ + G E Sbjct: 572 HYVKAHGSNHYQFHEPGMTAAAAERLHLENDLREALLRGEFELYYQPVLDTERLTVCGAE 631 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W HP+ G I F+ +AEE +I+ I ++L WR + + + +N Sbjct: 632 ALLRWHHPEAGLIPPDRFIPLAEETGLIRPIGTWVLREACAQAARWRR-LGLTGMTVSVN 690 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ + +EL + ++ + +P + L +ESV+M + L L+ +G+ L+ Sbjct: 691 VSGEQFWRDELPQAVRQALEAQALAPDALVLEITESVLMHGSANTETRLRELKAMGVGLS 750 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S LSYL P DT+K + S + E + +++I M + ++A+ Sbjct: 751 LDDFGTGYSSLSYLKRFPIDTLKIDKSFVRDMVRDEHDRTLAQTVIAMGHGLGLQVVAEG 810 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + + L R CD +Q H + PL ++ + +++ Sbjct: 811 VESAEHLPLLRRARCDRVQGYHFSRPLPARALSRWIQQHQ 850 Score = 101 bits (252), Expect = 7e-19, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 8/136 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + S + + V + I +LG + W +H +DR+ Sbjct: 21 LHRVLEASPAVTYALTRDGQSLRPVYISAHIEELLGYPVADWMADPQFWRQCLHPDDRER 80 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + G + +E+RVR D + W+ R+R M +G +G+ DIT + Sbjct: 81 VLAQSARHL--PEGLVDHEYRVRHRDGSYRWVHDRLRLMPARDGRPAMAVGVWQDITHRA 138 Query: 524 KSLEGILCNAFQDNLT 539 ++ + + LT Sbjct: 139 RADRLLRTLSH---LT 151 >gi|229193553|ref|ZP_04320497.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] gi|228589858|gb|EEK47733.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] Length = 909 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 343/868 (39%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P Sbjct: 52 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L + + + A F +Y++ ++ I T Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + ++ + + + Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + + + + +++ L + Q L T Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLFAQMQFNSELEKQIKLRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R +++ + P+ I Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKSRDIYYLHVTAVPIFLKE-KISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F L + + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + + +L++A++AMY AK++G N Sbjct: 577 KIADRIVTAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL +A+ N E YLVY P I +I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ ++ Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT S Sbjct: 756 LIESISQILNDVQVDPKYVTLELTERIAMVDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL N +K L++ Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|42784471|ref|NP_981718.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] gi|42740403|gb|AAS44326.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] Length = 909 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 174/870 (20%), Positives = 351/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIIVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIYI 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 + + +V L Y D F +NL L + L S+LI++ Y + Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTITPLYQVTLVLVAIACILHTKEPEKQEQVLLTPKLGEAIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR++F + + S + VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G Sbjct: 575 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITKKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 N L E + +I+ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL + +K L++ Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 903 >gi|34496603|ref|NP_900818.1| hypothetical protein CV_1148 [Chromobacterium violaceum ATCC 12472] gi|34102457|gb|AAQ58823.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 795 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 147/553 (26%), Positives = 257/553 (46%), Gaps = 15/553 (2%) Query: 407 QSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 LA S + + D + I G A G + Sbjct: 240 LRLAAKVFENSAEGILILDAGARIIAVNDAFTRITGYAEEEALGKASRIFSA------EQ 293 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 G Q E R Q++ + I + + +G + Y+ + +DIT++K Sbjct: 294 QARAAMQQALADCGHWQGEMLDRRKGGQWYPAELSISALRDEDGLLSNYVAVFSDITQRK 353 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ E + A D LT +PNR L L +D R VM ID+D++K IND Sbjct: 354 EAEERLQFLANHDPLTRLPNRSRLTASLDEALTRMDGEDG-RLAVMFIDLDRFKLINDSF 412 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L + R+ ++ +LARL G+ F +++ ++ ++AD A + ++ Sbjct: 413 GHQVGDQLLCEIAIRLSRVVGERGMLARLGGDEFTLLMSGFDSHHQLADMASDILAALGK 472 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P+ L E+ +T SIG + + + +LKNA++AMY AK G N + F +++ Sbjct: 473 PLCLEAHEVFITGSIGISVFPHDGRDARTLLKNADVAMYRAKEAGKNTYQFFDIGMNTQT 532 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +R++++ L +A+E E L Y P + + + G EAL++W HP+ G + + F+ +A Sbjct: 533 FERLLLENGLRMALERHEFELHYQPQLSAGERALAGAEALLRWRHPQLGLVPPARFIALA 592 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +IK I ++L R + +W Q P + +N++ + L + + Sbjct: 593 EETGLIKPIGDWVLREACRQLAAWDAQGLRVP-RLAVNLSPRQFGQPSLPAKVAGALQAA 651 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + R++L +ES++M +P + LL L+ +G+ L++DDFGT S LS+L P DT+ Sbjct: 652 GLAAGRLELEITESMIMQSPTEAVSLLSELKSLGVWLSIDDFGTGYSSLSHLKRFPLDTL 711 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + G + AI +I+ MAK ++ ++A+ + E L GC +Q H Sbjct: 712 KIDQSFVEGLPDDDDNAAIAEAILAMAKKLKFQVVAEGVESEEQAAFLEGKGCHVLQGYH 771 Query: 940 VASPLGFNSILKL 952 PL L Sbjct: 772 FGRPLPAGEFAAL 784 Score = 58.4 bits (140), Expect = 6e-06, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 5/142 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + +R V S ++ P +A I+G M G Sbjct: 108 QARQEQKAKREAEDRYLALVEQSLVGIYIMQ-DEKLAYVNPKLAEIMGYQPEEMEG--MT 164 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R L + Y R D M + R + NG Sbjct: 165 MPQLLVPGEAERLRQQLLRRFRDNISVMHYATRGLRKDGVLVDMEVHSR-LFELNGR-KA 222 Query: 512 YIGIANDITEQKKSLEGILCNA 533 IG+ DI+E+ + + A Sbjct: 223 VIGVVMDISERLLADTNLRLAA 244 Score = 43.4 bits (101), Expect = 0.18, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 4/109 (3%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D+ + A +G+++ S+ G D R + R Sbjct: 13 DMDGRYLLVNAAYARRVGVSAESLLGRRPE--DVFDAEDARQIREQDQQVLNLLSPRQFD 70 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 E V + +++ P+ +++G + DIT+ ++ + Sbjct: 71 EHFVL--NGVETYLLASKFPLFDADGRPAGVGSVDTDITQARQEQKAKR 117 >gi|119477208|ref|ZP_01617444.1| sensory box/GGDEF family protein [marine gamma proteobacterium HTCC2143] gi|119449571|gb|EAW30809.1| sensory box/GGDEF family protein [marine gamma proteobacterium HTCC2143] Length = 700 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 152/642 (23%), Positives = 281/642 (43%), Gaps = 12/642 (1%) Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382 Y + A L I + FI A+T +++ + + Sbjct: 53 LIICDYLMPRFSAAAALSTLKASGIDLPFIIASGAVTAEDAVSLLKEGAHDFMDKGALAR 112 Query: 383 GFTVIQHVLATGYFSQGIFSDG---ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I+ L + E S A+ V + G Sbjct: 113 LVPAIERELREADVREQRRQAEAQVEVLSQALEQCPASVVITSPDGNIEYVNSYFEKASG 172 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 ++ G + + + ++ + L V + R E R AD + W ++ Sbjct: 173 YSASDAKGRSLGFT--LQKEEHEHLMSELSQLVTEGQ-RWSGEMRSIRADGEMFWEYVKA 229 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 P+ N + + YI + DIT Q+ + +L A D+LTG+ NR +++LT L + Sbjct: 230 SPLMNEDKSVSHYIVVKEDITVQRDYEQQLLRQAHYDDLTGLANRVLLVEKLTQALQNAQ 289 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + N + V+ ID+D +K +ND +G ++GD +L +R+ ++ DI+AR+ G+ F + Sbjct: 290 QN-NSQLAVLGIDLDDFKNVNDSVGHSIGDTLLKQAAQRLSSCIRSGDIVARMGGDEFVL 348 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L +++ A + + + P N+ R+ +VT SIG + + + ML+NA+L Sbjct: 349 VLPLLSDAKNAELMAQRIVQKFSKPFNIAGRQYSVTCSIGISVYPDDTSDAHMMLRNADL 408 Query: 680 AMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY +K +G + + F R +R+ ++E L V+N EL L Y PI L ++I G Sbjct: 409 AMYQSKDQGRDQYQFFTEDINRRLVERLDLEEKLRNVVDNGELALQYQPIFNLETQKIAG 468 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W I F+ AE + +I+ I+ ++L R+ + + + + Sbjct: 469 FEALVRWPQADGSVIMPDSFIPAAENIGVIQKIDEWVLASACRETAPFL-LSGDDNLCLA 527 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 INI+ L D + A + P ++L +E V++ + E + + L ++GI Sbjct: 528 INISPLQLEDPGYVAFVMAQLEANQLEPRHLELEITERVLVSDAETTDRNIKALTELGIR 587 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915 +++DDFGT S L YL P T+K + S + ++ +II MAK ++ +IA Sbjct: 588 MSVDDFGTGYSSLGYLKRYPLHTLKIDRSFVADMDVDDSARRLVETIILMAKGLQMDVIA 647 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + I E L +GC Q ++ P+ S+ + + + Sbjct: 648 EGIETESQQVLLHELGCSQAQGYFLSRPVSLQSLAQKISAQN 689 >gi|167590038|ref|ZP_02382426.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia ubonensis Bu] Length = 804 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 154/664 (23%), Positives = 274/664 (41%), Gaps = 14/664 (2%) Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI--WFIG 353 L + Y I ++ G +L L + + Sbjct: 122 LDAVLVVYDDGEHGILTERDIVRLIAGGGLQGAVGEHASRPLQMLATKQSLYAAHRYMMQ 181 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA--- 410 M D+ L+ ++ + V + A + + +A Sbjct: 182 QNMRHIGIHDDHGALTGLLSFADVLQGIEHEYVNELRSALRERDEALGLARFNLRMADRV 241 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + + + D + G + G + L D +R + S Sbjct: 242 FESALEGIMVTDRHARIERVNQAFTRLTGYTEDEVVGRDPSLLSS-GRQTPDFYRKLWHS 300 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 G Q E R + + I + +++G I Y I +DIT+++++ E + Sbjct: 301 L--TTDGHWQGEIWNRRKSGELFLEYLTITSIRDNDGQISNYAAIFSDITQRRQAEERLG 358 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D LTG+ NR F +RL + + + VM +D+D++K +ND LG GD+ Sbjct: 359 YLATHDVLTGLANRTLFEERLAHAIVQAKRRSR-KVAVMYVDLDRFKLVNDTLGHNAGDE 417 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 VL + RI ++ D +AR+ G+ F ++L ++ + A + + I++ R Sbjct: 418 VLKVVAGRIVAGVRASDTVARMGGDEFALVLEEFDDVRDVGRIARKLLDEVGQAIDIGGR 477 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE- 709 EI VT SIG + + + +++ A+ AMY AK RG N + F S ++ Sbjct: 478 EIFVTPSIGISIYPDDGTEAEQLMLLADQAMYGAKSRGRNVFQFFESKMTSSAMEQLETL 537 Query: 710 -DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 +L A+E +E L Y P L IVG+EAL++W HP G + +F+ +AE +I Sbjct: 538 GELHRALEQNEFRLFYQPQYDLSSGRIVGVEALLRWLHPHKGLVPPGDFIGLAERSALIV 597 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++L R W D+ I +N++++ + + ++S+T P + Sbjct: 598 PIGKWVLREACRQARRWLDEGFEFG-RIAVNVSARQCFADSFLADLTTILSETALPPEYL 656 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L ES+ M E +LL L GISL +DDFGT S L YL +P DT+K + S + Sbjct: 657 QLELLESMAMNTREEIGILLRELATRGISLAIDDFGTGYSSLVYLKDLPVDTLKIDRSFL 716 Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 AI+R+I+ M + + ++ + + E + L +GC +Q +A P Sbjct: 717 ADCGTDSPDDAIVRAIVAMGRALGLDVVMEGVETEKQLAFLQEIGCHQVQGFLLARPQPA 776 Query: 947 NSIL 950 ++ Sbjct: 777 EQLV 780 >gi|253996028|ref|YP_003048092.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253982707|gb|ACT47565.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 836 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 138/563 (24%), Positives = 248/563 (44%), Gaps = 18/563 (3%) Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 + + +A S D + D + TI G ++ + G R Sbjct: 275 ALKNAETSLRIAATAFESSDGILITDAGCSILQVNSAFTTITGYSAEDVVGKNPRILSSG 334 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D+ ++ + D G E R + + I I + + +G + Y+ + Sbjct: 335 RH--DQLFYQALWDRV--NTTGTWCGEIWNRRKNGDIYPERITISEVKDKDGKVTNYVSV 390 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI+E K S E I AF D LT +PNR LDR+ S+ + ++ +D+D Sbjct: 391 FTDISESKASSEQIEHLAFYDPLTNLPNRLLLLDRVRQAFSSSSRTGK-KGALLFVDLDH 449 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKI 630 +K +ND LG + GD +L R+ ++ D +AR G+ F ++L + + Sbjct: 450 FKVLNDTLGHSTGDLLLKLQAERLSHCVRAGDTVARFGGDEFVVVLEDLDRNATEAAAIA 509 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + ++ P + T+SIG ++ + ++LK A+++MY AK G N Sbjct: 510 EQIGNKILSTLHEPCQFGTHQYQSTSSIGITLFSGDEHEIEDLLKQADISMYQAKKAGRN 569 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + F + V ++ +L A+E +L L Y + ++ +VG EALI+W HP+ Sbjct: 570 TLRFFDPAMQEKLSVRASLESELRYAIEKQQLALYYQVQVD-DNQRMVGAEALIRWIHPE 628 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ IAEE +I + +++ + W + I +N+++ Sbjct: 629 RGTVSPIEFIPIAEESALILDVGHWVINTACMQLAEWAKSVEKKHLMIAVNVSAHQFRAL 688 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + Q I SR+KL +ESV++ + + + L+ +G+ L+LDDFGT S Sbjct: 689 DFVQSTQQAIDLHKIDASRLKLELTESVILEDVDDVIAKMHALKALGVKLSLDDFGTGYS 748 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL +P D VK + S + ++++II +A N +IA+ + E+++ Sbjct: 749 SLSYLKKLPLDQVKIDQSFVRDLAYDPNDAIMVKTIIDLANNFRINVIAEGVETELELDI 808 Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949 L GC Q P+ + Sbjct: 809 LKGYGCRLYQGYLFGRPVPIEQL 831 Score = 47.6 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 33/257 (12%), Positives = 70/257 (27%), Gaps = 12/257 (4%) Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-GYERAVLLIPA 343 I S + L+ + P + + ++ I+ + Y A Sbjct: 37 IALSYFSIPFGLWYFAKKRPDIPYRWLMVVFGVFIVACGVTHIFDIVNIWYPSYWASAYA 96 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL-IVILIGFTVIQHVLATGYFSQ-GIF 401 + +A+ + + P+ VL + ++ + Sbjct: 97 KAFTGVVSFATAVAVWWIMPLALKAPSAQSLQVLNQALARSHAELETRVQQRTAELTSAL 156 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM--HGPIRNWLPYIHIN 459 + R S A+ V+ DI V + + + + Sbjct: 157 NQSHRLSEALDHIPAFVYIKDINGKYVYANRMTLDFFKCSVDDLVQIDEGKYFSARTLEK 216 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS--NSNGDILRYIGIAN 517 R +D V R E + D++ + P+ ++ I GI+ Sbjct: 217 SR-----SVDKSVIERGEDACEEIEAVSDDDKKRTFLQIKTPIYENEADRKIWGLCGIST 271 Query: 518 DITEQKKSLEGILCNAF 534 DIT K + + A Sbjct: 272 DITALKNAETSLRIAAT 288 >gi|119945428|ref|YP_943108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] gi|119864032|gb|ABM03509.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] Length = 674 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 148/552 (26%), Positives = 265/552 (48%), Gaps = 16/552 (2%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFV 472 S + + D + + I G +S G + L +H F + + Sbjct: 119 SQEGMMVTDASKIILRVNHAFTHITGYSSDDAVGQTPSLLKSGMH---NKAFYATMWKKI 175 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G + E R + + + +RI + N+ G + Y+ DIT K + I Sbjct: 176 -NSTGLWEGEILTRRKNGEIYPEYLRITAVKNAQGIVTNYVATRTDITASKAASNEIEKL 234 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 AF D LT +PNR+ F+DRL L LS T R ++ +D+D++K +ND LG +GD +L Sbjct: 235 AFYDPLTQLPNRRLFIDRLNQALALS-THSRQRGALLFLDLDQFKTLNDTLGHDIGDLLL 293 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINL 647 +T R+ L+ D +AR G+ F ++L + + + + D A + S+ P L Sbjct: 294 KKVTERLSASLRESDTVARFGGDEFVVLLENLSTYSIEAAAQTRDIATKISLSLNQPYQL 353 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706 L+ T SIG + ++T+ E+LK A++AMY +K +GGN + F ++ Sbjct: 354 LDHVYHNTPSIGATLFIGHQLTAEELLKQADIAMYQSKAQGGNTLRFFDQMMQKAIIARV 413 Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ +L A++ + L Y + + + +G E LI W HP+ G IS F+ +AE++ Sbjct: 414 DLQNELRQAIKQQQFQLYYQIQVD-SNSQPLGAEVLISWQHPERGRISPRHFIPLAEDIG 472 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++LE + + +W++ + + +N+++K L + E + A + + +P Sbjct: 473 LILPIGQWVLETVCAQLKTWQEDPLTEDLVLAVNVSAKQLHQVDFVEQVIATLQRHSTNP 532 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 +R+KL +ES+++ N + L KIGI +LDDFGT S L YL +P D +K + Sbjct: 533 ARLKLELTESILLNNITDIIAKMKALNKIGIRFSLDDFGTGYSSLQYLKMLPLDELKIDQ 592 Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + AI+ +II +A +++ +IA+ + L + GC Q + P Sbjct: 593 SFVRNIATDSSDRAIVHTIITIASSLDMNVIAEGVETNAQRLFLQKKGCLRYQGYLFSKP 652 Query: 944 LGFNSILKLLKE 955 + + +LK Sbjct: 653 VPIKELEAILKR 664 >gi|114046737|ref|YP_737287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] gi|113888179|gb|ABI42230.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] Length = 878 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 142/561 (25%), Positives = 268/561 (47%), Gaps = 15/561 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA + + V D + I G + + G R + H Sbjct: 323 EEQLTLATNVFKHTLEGVVITDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRH-- 380 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 ++ F + + + G+ E R D I I + + GD+ ++ + +DI Sbjct: 381 EKAFFDAMWNHLLE--TGKWNGEIWNRRKDGTIFPQNITISTIYDELGDVRYFVAVFSDI 438 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK+S + A+ D LT +PNR + +L L + N + + ID+D +K I Sbjct: 439 SAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRL-NAQLATVFIDVDLFKHI 497 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ L+ D+L+R+ G+ F ++ + A +R+ Sbjct: 498 NDSFGHSIGDEMLVELAKRLRCRLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQ 557 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TAS+G + + + + +L+NA+ AMY AK G N+ + S Sbjct: 558 VFEQPFVVSTGDHLRLTASMGVSIYPNDGSNADTLLRNADAAMYRAKSEGRNNFAFYTES 617 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L + +G+EAL++W+ P G IS Sbjct: 618 LTKQSIEHLKLQSALYGALEQNALYLMYQPKLDLASRKTIGVEALLRWNDPILGQISPGV 677 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I I L+++E + W + P I +N+A + L + E ++ Sbjct: 678 FIPVAEKIGLIYDIGLWVIETACLQGVRWLAE-GTPFGRIAVNVAGQQLQRSSFVEDVKR 736 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T + ++L +ESV+M NP+ + L L +GI L++DDFGT S L+YL + Sbjct: 737 ILTQTGLPATCLELEVTESVMMHNPDVAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 796 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ I+A+ + + + LT+ CD Sbjct: 797 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLEIVAEGVETQAQAEFLTQNLCDQ 856 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + PL + L + Sbjct: 857 AQGYLFSRPLLPADVEAFLAK 877 Score = 38.8 bits (89), Expect = 5.1, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 3/117 (2%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 +W + + L + G + F + Sbjct: 217 IWVKNTEGVYTICNHSVEKAWELPRSEIVGKTDE--DLFGKEIAEIFLNGDRLAIEAGTP 274 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + E N+ W+ P + ++G + IG+ +I++ K+ +E L A Sbjct: 275 IIVAECLDGEKQNKHLWLETLKIPATTADGALAGVIGMTRNISKHKE-VEEQLTLAT 330 >gi|229020569|ref|ZP_04177311.1| Sensory box protein [Bacillus cereus AH1273] gi|229026787|ref|ZP_04183119.1| Sensory box protein [Bacillus cereus AH1272] gi|228734510|gb|EEL85172.1| Sensory box protein [Bacillus cereus AH1272] gi|228740733|gb|EEL90989.1| Sensory box protein [Bacillus cereus AH1273] Length = 688 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 151/566 (26%), Positives = 273/566 (48%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 127 EGASALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLLH 184 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D + + L S R L E R + + ++++ I P+ N +++ G Sbjct: 185 FIDPQDHELLKKSLQSTKEGRPQTL--EIRTKEKEGYYYYLHITFIPIF-INKEVVGMFG 241 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L TIL+ + + N VM +D+D Sbjct: 242 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQNNTN-DVAVMFLDLD 300 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L + A A Sbjct: 301 RFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIA 360 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E++VT SIG A + +E++KNA++AMY AK G N Sbjct: 361 EQILTILNKPYFIKDEELSVTPSIGIAMFPEYGTDVTELMKNADMAMYRAKANGKNRFIF 420 Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F +++ ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 421 FSKEMSVAQNELHFLEGELSKALQQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIV 480 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 481 SPAQFIPLAEETGFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHADLIP 539 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 540 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 599 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 600 LTKYPINTLKIAREFICGITNSPLEEAIIASIIKLSKELNLEVIAEGVETEEQWKFLHEQ 659 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ + P+ + LL E+ Sbjct: 660 NCDHIQGFLFSKPVSSQDVWMLLHEK 685 >gi|114321822|ref|YP_743505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114228216|gb|ABI58015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 840 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 140/597 (23%), Positives = 267/597 (44%), Gaps = 17/597 (2%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRD 426 L+G L+ + A + + + LA + S + + D Sbjct: 242 GLLGFQDLLAGAEQSYLKDLRRALEQRDKALAQSRKHLQLAERVIDSSLEGIVITDAHAR 301 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 P + G + + G L H +F + + +G + E Sbjct: 302 IEFVNPAFTHLTGYSLEEVAGRTPAVLSSGRHP---PSFYREMWQAL-QEQGYWRGEIWN 357 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R + ++ I ++N +GD Y G+ DIT +++ I A+ D LT +PNR+ Sbjct: 358 RRKSGALYLELLTITAITNDDGDTTHYAGLFTDITHIRENERQIRQLAYYDPLTRLPNRR 417 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 DRL+ + + R VM ID+D +K++ND LG AVGD++L+ ++ R+ E L+ Sbjct: 418 LLDDRLSLAIKHAHRHRQ-RLAVMFIDLDHFKQVNDTLGHAVGDELLLRVSERLREHLRE 476 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D LARL G+ F +L + + ++I+ P + + + V SIG + + Sbjct: 477 DDTLARLGGDEFLALLPDLQEVDEAIRVTQRLIEAISQPYTIGDHDFRVGCSIGLSLYPD 536 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSE-LYL 722 + +++NA+ AMY +K G N + + + +++ ++ L E E L + Sbjct: 537 DGESPDALIRNADGAMYRSKTEGRNTYRLYAPEMDTRAKNQLALETALRDTAETGEGLSI 596 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y PI + EAL++W HP G ++ EF+ +AE +I + ++ + + Sbjct: 597 HYQPIFDWRTGALHSAEALLRWHHPTRGAVAPGEFIPLAERSGLIIPLGQAVMRMVCTQL 656 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W+ P+ + IN+++K +EL ++ ++ + +P + +ES +M + E Sbjct: 657 KRWQAAGLR-PVPVAINLSAKQFWQDELPGFIRKMLQRCDLNPGLMGFELTESTLMHDIE 715 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI---AIL 899 R L LR +G S+ +DDFGT S L+YL +P T+K + S ++ R AI+ Sbjct: 716 RGLDTLAALRGMGCSVAIDDFGTGYSSLTYLQRLPVTTLKIDRSFVSDLGTCRKGGCAIV 775 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKE 955 ++ +A+ +E ++A+ + E ++ L R +Q P+ ++ L+ Sbjct: 776 AAVTGLARELELQVVAEGVETEAQLRALDRYQVALVQGFKTGRPVPADAFSEAYLRA 832 >gi|24372022|ref|NP_716064.1| sensory box protein [Shewanella oneidensis MR-1] gi|24345889|gb|AAN53509.1|AE015491_1 sensory box protein [Shewanella oneidensis MR-1] Length = 1491 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 141/569 (24%), Positives = 267/569 (46%), Gaps = 12/569 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + + A + + V D+ + I+G S+ G + Sbjct: 925 LRRQLEDEVSLLAQAFENTSEGVLILDVDENIRVANHAAQHIIGSEQKSLVGLSFSQFVQ 984 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +D T + + + E + + + + + M + N + + Y+ + Sbjct: 985 M----KDGLSTEVAQLL-GQETSWTGERELVGQNGLVCPVWLNVSVMQSVNQNAIHYVVV 1039 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DITE+K++ + A D LTG+PNR F +RL + + + + ++ +D+D+ Sbjct: 1040 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQAAEQNGE-KLALLFLDLDR 1098 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G ++GD +LV + R+ + +L R G+ F I+L + I A Sbjct: 1099 FKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLKNVKELSDINHLAE 1158 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + I P L RE ++ SIG + W + +KNA+LAMYHAK G + + + Sbjct: 1159 QLLAQIVAPFRLFGREFYISTSIGISIWPDDAMQPEAFIKNADLAMYHAKEEGRGNFKYY 1218 Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752 ++ + ++ DL A+E E L Y P I + ++ +G+EALI+W HP G + Sbjct: 1219 SSERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRGDKFIGMEALIRWQHPVDGFV 1278 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AE ++ I+ ++L D W Q P + +NI++ + + Sbjct: 1279 RPDIFIKVAEACGLVVDIDRWVLRCACLDGARWAKQTI-EPFKMSVNISAVHFRQPDFID 1337 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 G++ ++ T S + L +E V+M + ++ L +L +GI + +DDFGT S L+Y Sbjct: 1338 GVKKILDATHMPASSLCLEITEGVLMKELQVAKTHLKQLDDLGIEVAIDDFGTGYSSLAY 1397 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L DT+K + S + AI+ SII +A+N++ T+IA+ + +++L Sbjct: 1398 LRNFEVDTLKIDRSFLIDIASNGADQAIVSSIIELARNLKLTVIAEGVETVEQLEQLFSR 1457 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPL 959 GC +Q + A P+ + K L+ ++PL Sbjct: 1458 GCYIVQGYYFAKPMSVSDFEKYLQSQYPL 1486 Score = 101 bits (252), Expect = 6e-19, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ +I + + + + V +Q + +R ++ GS +W+W Sbjct: 776 LLLVFSIIALGLAWYRQRQVRTFMAMNQALTESDDRLRQSLRGSDSDLWEWHRDTQCFYL 835 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +LG + + + +H DR+ + + R + E+R D Sbjct: 836 DNRGY-VLGNHANEIVLTLETLP--VHPLDREKVLIQWNRMLSGDLDRFEAEYRYHRRDG 892 Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP++ + +I R GI +DIT +++ + + A Sbjct: 893 NWGWLRVRGRPVARNKQTQEIERVAGIYSDITLRRQLEDEVSLLA 937 >gi|320105855|ref|YP_004181445.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Terriglobus saanensis SP1PR4] gi|319924376|gb|ADV81451.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Terriglobus saanensis SP1PR4] Length = 696 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 256/577 (44%), Gaps = 8/577 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +++ + ++ + +R + + GD V D+ + + G Sbjct: 122 RALRNAVERKSIEDALYVEKDRALVTLNSIGDAVLCTDLSGKIIFLNLVAEALTGWKRDE 181 Query: 445 MHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPM 502 G I R L + R + + + P+ Sbjct: 182 ALGKPLAEVFVIIDGETRQPAADPLKKAIEQNRAVSIASNSLLLRRGGGEATIEDSSAPI 241 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + +G ++ + + +D++ + + A D +T +PNR DR++ + + Sbjct: 242 HDRSGAVIGAVIVFHDVSVARAMTIEMTYAAHHDAVTALPNRLLLNDRISHAITTAQRHK 301 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + VM +D+D +K IND LG AVGD +L ++ +R+ ++ D + R G+ F ++L Sbjct: 302 Q-KFAVMFVDLDHFKSINDSLGHAVGDKLLQAVAKRLQASVRASDTVGRHGGDEFIVLLP 360 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 A + +++ P + + +TA+IG + + ++ +++NA+LAMY Sbjct: 361 EIEEENDSEISAKKILAALSEPFLFDDVTLQITATIGISIYPRDGKDANSLIQNADLAMY 420 Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G + V F +R ++ L A+E +E L Y P + L +I G EA Sbjct: 421 EAKENGRDQVHFFSDEMKLQAIERQFVESGLRRALEQNEFLLYYQPKVNLKSGKITGAEA 480 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W P G + +F+ +AE +I I ++L + R W + + + I IN+ Sbjct: 481 LIRWQEPHRGLLLPDQFIRVAENRGLIIPIGRWVLHEVCRQARLW-ELTSGVVLPISINV 539 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + +L D + +G++A +++T +P I+ +E +++ + S +L L+ +GI + + Sbjct: 540 SEAELRDTDFIQGVRAALAETGLTPRSIQFELTEGILLKDLRTSIAVLNELKLMGIHMAV 599 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL + +K + S + + ++ +II MAK ++ +IA+ + Sbjct: 600 DDFGTGYSSLSYLHQFAINVLKIDKSFVHLLTADPRNSTLICAIIAMAKGLKYRVIAEGV 659 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E L + GC+ Q + PL +L+ + Sbjct: 660 ETETQRDFLQKQGCEEGQGYLFSKPLPAAEFRELIHK 696 >gi|239787445|emb|CAX83917.1| Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) [uncultured bacterium] Length = 686 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 164/605 (27%), Positives = 282/605 (46%), Gaps = 12/605 (1%) Query: 358 ITKRLDNDIIQPALVGGLV-LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 IT D++ + A G V I I + ++++ + + + S +G+ Sbjct: 86 ITGLNDDESVDRAFEAGAVDFITKPIHWAILRNRVHYLLTNIEAQRNLSLASRVYDNTGE 145 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475 + D ++ P I G + G N L H D F L + + Sbjct: 146 GIVVTDPYGMILSVNPAFTRITGFEAFEAVGRNMNMLKSGRHGGD---FYLKLWQALSHE 202 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 GR Q EF R D I + + G I YI + +D+T K+S E +L Sbjct: 203 -GRWQGEFYNRRKDGSIFPQWSNISAIHSPTGRIENYISVFSDLTAIKESEENLLFVTGH 261 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D LTG+PNR F +RL L+ +A V+++D+D++K +N+ +G VGD +++ + Sbjct: 262 DALTGLPNRHLFHERLGFALEEAA-HAGEMVWVLLLDLDRFKVVNETMGHDVGDTLILEV 320 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 +RR+ L L RL G+ FG+I+ S S A A AM + P L + E V Sbjct: 321 SRRLASLSHVKGSLGRLGGDEFGVIIASAGESQIAAQTAQAMLDVLKTPFMLRDMEYFVG 380 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCL 713 ASIG + + +++N + A+YHAK RG N+ + +R + + ++ L + Sbjct: 381 ASIGIGVYPLDGADAKTLMQNIDAALYHAKERGRNNFQFYRNEMNTRAMNLIRMETSLRV 440 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+E E L + P + L + G+EALI+W+ P G +S EF+ +AEE +I + L+ Sbjct: 441 ALEKDEFELYFQPQMHLSSGRLAGVEALIRWNRPGLGMVSPGEFIPVAEETGLIIPMGLW 500 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 L + SW P + +N++ + + + + ++L + Sbjct: 501 ALTDACQRAFSWISA-GHAPFRVAVNLSGIQFEQPDFVNLVTQTLKASGLDHQWLELELT 559 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893 ES+ MG+ E + + L L +G++L +DDFGT S L YL P DT+K + S + E Sbjct: 560 ESIAMGDVEETLIKLKSLSSVGVALAIDDFGTGFSSLKYLKRFPIDTLKIDQSFVRNCAE 619 Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 AI+R+ I +A ++ ++IA+ + E ++ L GCD IQ + PL ++++ Sbjct: 620 DVEDAAIIRAFIGLAHSLGLSVIAEGVETEEQLEFLKSHGCDEIQGYIYSRPLSEAALME 679 Query: 952 LLKER 956 L+ Sbjct: 680 FLRSH 684 >gi|304412454|ref|ZP_07394060.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|307307113|ref|ZP_07586851.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] gi|304349096|gb|EFM13508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|306910352|gb|EFN40783.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] Length = 1490 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 139/563 (24%), Positives = 265/563 (47%), Gaps = 12/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + A + + V D+ I+G+ S + G + Sbjct: 925 QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSADLVGQSFTQFVQM 984 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D + + + E + A Q + + + M ++NG + Y+ + Sbjct: 985 N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1039 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K++ + A D LTG+PNR F RL + + + ++ +D+D++ Sbjct: 1040 SDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1098 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV + R+ + +L R G+ F I+L + N+ +I A Sbjct: 1099 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDEINHIAER 1158 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + + I P L RE ++ SIG + W + +KNA+LAMYHAK G + + + Sbjct: 1159 LLEQIVAPFKLYGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1218 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753 ++ + ++ DL A+E E L Y P I + +++++G+EALI+W HP G I Sbjct: 1219 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1278 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AE +I I+ ++L + W + + +NI++ + E Sbjct: 1279 PDIFIKVAEACGLIVDIDRWVLRQACVQGAHWAKRYGAT-FKLSVNISAVHFRQPDFIED 1337 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q ++ +T + + L +E V+M ++ L RL+ +GI + +DDFGT S L+YL Sbjct: 1338 IQRILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1397 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + +T+K + S + AI+ SII +A+N++ ++A+ I ++++ G Sbjct: 1398 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1457 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 C IQ + A P+ + L+ Sbjct: 1458 CYIIQGYYFAKPMCVADFERYLE 1480 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ +I + + + + + + + +R ++ GS +W+W Sbjct: 775 LLLLFSIIALSLAWYRQRQINTFKQMNLALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 834 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +LG + + + +H DR+ DS + R + E+R + D Sbjct: 835 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 891 Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP++ + +I R GI +DIT Q++ + + A Sbjct: 892 NWGWLRVRGRPVARNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 936 >gi|218900427|ref|YP_002448838.1| sensory box/GGDEF family protein [Bacillus cereus G9842] gi|218543433|gb|ACK95827.1| sensory box/GGDEF family protein [Bacillus cereus G9842] Length = 909 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 176/870 (20%), Positives = 354/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + S F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L + Y+ N L + ++ + A F +Y++ ++ + Sbjct: 107 YL------LFLVTFAFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL---FMYLH 274 T + +V L Y +D FL +NL L + LSS+LI++ +Y + Sbjct: 161 FTTSYIDIFVQLTYPMVDLLFLLIGINLLFKPLSLLPKKVGALLSSALILYATIDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + ++ + + + Sbjct: 221 IKYFIPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILI--FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 +L I + I + + + +++ L+ + Q L Sbjct: 281 ITLILFILVEYVFGPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ I Sbjct: 401 --YYSLIYEEDLEEMINSFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKE-KI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR++F L + + VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIENYKKKPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G Sbjct: 575 VQKMADIIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL +A+ N E +LVY P I +I+G EALI+W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPIALVNKEFHLVYQPQIDTTTNKIIGAEALIRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+IS EF+ I EE + + ++L+ + W + I +N+++K+ Sbjct: 695 LLGDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-ILGYQNLKISVNLSAKEFRQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT Sbjct: 754 DQLIENISQILNNVSVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL N +K L++ Sbjct: 874 FLQKHNCKYMQGYYFSKPLTSNQFIKFLQK 903 >gi|117919610|ref|YP_868802.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] gi|117611942|gb|ABK47396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] Length = 878 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 143/561 (25%), Positives = 268/561 (47%), Gaps = 15/561 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA + + V D + I G + + G R + H Sbjct: 323 EEQLTLATNVFKHTLEGVVITDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRH-- 380 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 ++ F + + + G+ E R D I I + + GD+ ++ + +DI Sbjct: 381 EKAFFDAMWNHLLE--TGKWNGEIWNRRKDGTIFPQNITISTIYDELGDVRYFVAVFSDI 438 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK+S + A+ D LT +PNR + +L L + N + + ID+D +K I Sbjct: 439 SAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRL-NAQLATVFIDVDLFKHI 497 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ L+ D+L+R+ G+ F ++ + A +R+ Sbjct: 498 NDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQ 557 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TAS+G + + + +L+NA+ AMY AK G N+ + S Sbjct: 558 VFEQPFVVSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTES 617 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L+ + +G+EAL++W+ P G IS Sbjct: 618 LTKQSFEHLKLQSALYGALEQNALYLMYQPKLDLVSRKTIGVEALLRWNDPILGQISPGV 677 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I I L++LE + W + P I +N+A + L + E ++ Sbjct: 678 FIPVAEKIGLIYDIGLWVLETACLQGVRWLTE-GKPFGRIAVNVAGQQLQRSSFVEDVKR 736 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T + ++L +ESV+M NP+ + L L +GI L++DDFGT S L+YL + Sbjct: 737 ILTQTGLPATCLELEVTESVMMHNPDVAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 796 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ I+A+ + + + LT+ CD Sbjct: 797 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLEIVAEGVETQAQAEFLTQNLCDQ 856 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + PL + L + Sbjct: 857 AQGYLFSRPLLPADVEAFLAK 877 >gi|153002435|ref|YP_001368116.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151367053|gb|ABS10053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS185] Length = 1497 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 139/563 (24%), Positives = 265/563 (47%), Gaps = 12/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + A + + V D+ I+G+ S + G + Sbjct: 932 QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSTDLVGQSFTQFVQM 991 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D + + + E + A Q + + + M ++NG + Y+ + Sbjct: 992 N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1046 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K++ + A D LTG+PNR F RL + + + ++ +D+D++ Sbjct: 1047 SDITERKQTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1105 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV + R+ + +L R G+ F I+L + N+ I A Sbjct: 1106 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDDINHIAER 1165 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + + I P L RE ++ SIG + W + +KNA+LAMYHAK G + + + Sbjct: 1166 LLEQIVAPFKLYGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1225 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753 ++ + ++ DL A+E E L Y P I + +++++G+EALI+W HP G I Sbjct: 1226 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1285 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AE +I I+ ++L + W + + +NI++ + E Sbjct: 1286 PDIFIKVAEACGLIVDIDRWVLRQACVQGAHWAKRYGST-FKLSVNISAVHFRQPDFIED 1344 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q+++ +T + + L +E V+M ++ L RL+ +GI + +DDFGT S L+YL Sbjct: 1345 IQSILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1404 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + +T+K + S + AI+ SII +A+N++ ++A+ I ++++ G Sbjct: 1405 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1464 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 C IQ + A P+ + L+ Sbjct: 1465 CYIIQGYYFAKPMCVADFERYLE 1487 Score = 104 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ +I + + + + + +Q + +R ++ GS +W+W Sbjct: 782 LLLLFSIIALSLAWYRQRQINTFKQMNQALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 841 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +LG + + + +H DR+ DS + R + E+R + D Sbjct: 842 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 898 Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP++ + +I R GI +DIT Q++ + + A Sbjct: 899 NWGWLRVRGRPVARNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 943 >gi|119493186|ref|ZP_01624061.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106] gi|119452751|gb|EAW33928.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106] Length = 1653 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 147/575 (25%), Positives = 271/575 (47%), Gaps = 17/575 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTT--TPDIATILGLASGSMHG 447 + + + G+ ++ D+ D P + + + G Sbjct: 1079 ERQQAEAQLRENEQFLQSIYQGAAVSIFVVDVLESGDFRYVGLNPIHEQLTQFTTAQLKG 1138 Query: 448 PIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 I +D + + + + ++ P+ + Sbjct: 1139 KTP---EQILPASYAKVVRQHYIDCVTAKKTISYEEVMPFQE---SISHWLTQLTPICDR 1192 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 N I R +G + +ITE+K + E + NA+ D+LT +PNR F++RL + T Sbjct: 1193 NNHIYRIVGTSINITERKLAEEKLRYNAYHDSLTSLPNRPFFMERLQEAIQQVKTQKGCL 1252 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 +V+ D+D +K IND LG A+GD +L++LT R+ L+ DILAR G+ F I+L Sbjct: 1253 FSVLFFDLDDFKYINDSLGHAIGDQLLIALTDRLRSCLRKTDILARFGGDEFTILLGGIQ 1312 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ A +++ + +P L ++ ASIG A T+ E+L++A++AMY AK Sbjct: 1313 QIDQVIKVAQNIQQELNLPFVLGSHQVFTNASIGIALVTADYQQPEEILRDADIAMYSAK 1372 Query: 686 HRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G F R+ ++ DL A+E + + Y PI+ L + I G EALI+ Sbjct: 1373 AQGQGKSAIFNRQMHLKMLERLQLETDLRQAIEQKQFQVYYQPIVCLKTDNITGFEALIR 1432 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIAS 802 W HP +S ++F+ I E +I I ++L + + +W +Q P + I +N++ Sbjct: 1433 WKHPNGNFVSPAKFIPITEITGLIVEIGQWVLHQACLQMKTWHEQFPNFPNLTISVNLSG 1492 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L + ++ + + ++ +T +KL +ES++M NP + LL +++ I L+LDD Sbjct: 1493 RQLREPDVVDKIDDILQETGLKRDCLKLEITESMLMDNPSAVKSLLKQIKSRQIKLSLDD 1552 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P DT+K + + + + + AI ++I+ +A+N+ +IA+ I Sbjct: 1553 FGTGYSSLSYLHSFPIDTLKIDRAFVVHANSEFKNKAITQAIVTLAQNLGMEVIAEGIET 1612 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +++L ++ C++ Q + PL LL+ Sbjct: 1613 TDQLEQLKQLKCEFGQGYLFSKPLTQADAETLLQS 1647 Score = 68.8 bits (167), Expect = 5e-09, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 13/148 (8%) Query: 387 IQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDI---VRDRVTTTPDIATILGL 440 +Q + + ER L A+ + + + D + I I G Sbjct: 583 LQAIANILATAVEKVESTERLRLLERAINFTSNGILITDPNQPDNPIIYANSAIERITGF 642 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIR 498 + M G + + + ++ + + AD W+ + Sbjct: 643 SPSEMIGYNPRFFQQ-----NNRDQAGINELRQAVQQAKECNVILQNYRADGTPIWIELY 697 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL 526 I P+ N G + +IG+ NDITE++++ Sbjct: 698 ISPVFNDAGLLTHFIGVQNDITERRQTE 725 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 32/207 (15%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI------QHVLATGYFSQGIFSDG 404 + N + L+GG + I +L+G + + +Q + Sbjct: 244 LQLASNLTLFKTQNLPLSEILLGGGMTISLLVGISTFLANLYREQAKKLHKINQDFLEEI 303 Query: 405 ERQSLAVLG--------------SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + A+ S D++ P T LG + Sbjct: 304 HLREAALHQYQKVEQERDCLFLLSPDLLCIAGFDSYFKRINPCFETTLGYTQAQLLAQP- 362 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + ++H DR + + + +Q+E R R + + W+ + P + Sbjct: 363 -LITWVHPEDRAETQIKWQELLTGK--SIQFENRYRCQEGSYIWLSWKATPSL----ETS 415 Query: 511 RYIGIANDITEQKK----SLEGILCNA 533 +A +ITE+K+ + A Sbjct: 416 LVYAVARNITERKQVETLLRSRVHQQA 442 Score = 58.0 bits (139), Expect = 9e-06, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 41/148 (27%), Gaps = 8/148 (5%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ V + + + R + + D + D I Sbjct: 707 LLTHFIGVQNDITERRQTEVALQASEARLRGLLDIAQDGIISIDQQDRIQLFNQGAEQIF 766 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G +S ++ G L + + + + E R + Sbjct: 767 GYSSETVIGQP---LDLLIPQ--QYLQAYHSENIDQSLNK-PLEIIGRRQNGTEFPAEAS 820 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL 526 + + + G + + I DI+ +K++ Sbjct: 821 VSKLELAEG--IFFTIILRDISNRKQAE 846 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 20/203 (9%), Positives = 54/203 (26%), Gaps = 8/203 (3%) Query: 334 YERAVLLIPAWILIFIWFI--GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 + LI W+ + + I + I+ + ++ +++V Sbjct: 888 NRSSSELIGYWLGSLCGKVEQATEVTIVHSPERLIMAEMQMVNIIWEGKPATLASLRNVT 947 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV----RDRVTTTPDIATILGLASGSMHG 447 Q + + V+ + + GL S + G Sbjct: 948 ERYEAMQKVRQTRNFLQTLIDHLPVAVFVKEGKPKHFGQFTFWNKTSERLFGLKSEQVIG 1007 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + + + E V + ++ + P+ + Sbjct: 1008 KTVH--ELFPPEQAKRMIQQDQEALNWGLMLDISEESVNSLNSGRRILHTVKVPLYDDEM 1065 Query: 508 DILRYIGIANDITEQKKSLEGIL 530 + + I DITE++++ + Sbjct: 1066 EPEHLLCICEDITERQQAEAQLR 1088 >gi|89094950|ref|ZP_01167881.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] gi|89080816|gb|EAR60057.1| PAS:GGDEF protein [Oceanospirillum sp. MED92] Length = 892 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 144/563 (25%), Positives = 258/563 (45%), Gaps = 21/563 (3%) Query: 401 FSDGER-QSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYI 456 ER +A S + + D + + G + G +L Sbjct: 324 RKRHERELHIAATAFDSQEGMLITDAEHRILRVNNAFTRVTGYEAEEAIGNTPAFLQSGK 383 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H D F + + + Q E + + + + I + S G+I Y+G Sbjct: 384 HSED---FYQTMMESLS-KNNYWQGEVWNQRKSGEIYPQHLTITAVQTSAGEITNYVGAF 439 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT++K+ I AF D+LTG+PNR+S +RL + L S V ID+D + Sbjct: 440 TDITQRKQDEADIHQLAFYDSLTGLPNRRSLQERLDSALS-SCRHTRQLGAVFFIDLDNF 498 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIA 631 K +ND G GD +LV + R+ ++ D++ARL G+ F +IL + ++ Sbjct: 499 KNLNDTAGHDQGDKLLVEVANRLNSCVRNADMVARLGGDEFIVILENLGVDESNVLAQVK 558 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 D + +I P+ + + T SIG A ++ + E++K +++AMY AK G N Sbjct: 559 DIVAKVILTIQAPLTIGTQAYHPTCSIGIALFSEKDFS-DEVMKRSDMAMYQAKSSGKNT 617 Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F + DL A+ N +L L Y P R ++G EAL++W HP Sbjct: 618 YRFFDPVAEEALCSLARMDADLRFALSNQQLELHYQPQYRCQT--LIGAEALLRWKHPDR 675 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S +EF+ +AE+ +I I +++ + + + W+++ +FI +N++++ + Sbjct: 676 GMVSPAEFIPLAEDTGLILPIGEWVIRQACKQLQQWQERPETAELFIAVNVSARQFCQDN 735 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 E ++ L++ S ++KL +ES+V+ + E + + LR GI LDDFGT S Sbjct: 736 FVESVRQLLNTYGVSAEKLKLELTESLVLMDVEDTIQKMQALRSYGIRFALDDFGTGYSS 795 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LS+L +P D +K + S + + I+++II M +N+ ++A+ + + + L Sbjct: 796 LSHLKRLPLDQIKIDRSFIRDVPEDQDDSEIVQAIIAMGQNLGLNVLAEGVETDEQLAFL 855 Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950 T + C IQ + P + Sbjct: 856 TELDCLDIQGFLLGRPSSIDKFE 878 Score = 58.8 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 40/345 (11%), Positives = 99/345 (28%), Gaps = 24/345 (6%) Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271 ++ +L +A ++ + D ++ + IA++ + Sbjct: 1 MSGDILLPLVNNVALLLAMGVLFDAFAFNEAKPSLPKRITSGLILGCIAIAIMSMPLSIT 60 Query: 272 ---YLHWNRWHAKVGYITFSGIACIAILFCMSFY-YPMVTASIARITLASIVLYYTYFII 327 + V + F I + + + L + Sbjct: 61 SGVIIDTRSILLSVSGLFFGVIPTVIAASMAAVFRIMEGGQGTIAGLLIIMTSAGIGIYC 120 Query: 328 YHG--------MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379 Y +KGY+ ++ + + + + + L + L ++I P +V + V Sbjct: 121 YQWKQRLGHEVIKGYQLYLMGLTVHVSMMVCLLVLPYSTLGLLLSEITLPIIVIFPLATV 180 Query: 380 ILIGFTVIQHVL-----ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 +L G Q A + R D++++ DI + Sbjct: 181 LLGGLLSQQISRKKAEAALRESERTSNHARHRLEATFSAIPDLLFEMDIEGRYLACHASD 240 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQFH 493 L + G + +I +++ + + Q +V Sbjct: 241 PDDLVAKPEELIGK--SVFDFIPLDEAQIIVEAIREADLKGISKGRQVTLQVGR---GLR 295 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF-QDN 537 + + + +I ++ DITE+K+ + A D+ Sbjct: 296 EFELSVSRKHDDESSEHHFIVLSRDITERKRHERELHIAATAFDS 340 >gi|209546934|ref|YP_002278852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538178|gb|ACI58112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 730 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 140/582 (24%), Positives = 260/582 (44%), Gaps = 8/582 (1%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + + I S + + D++W D+ + + Sbjct: 139 AAATTLLAFSRDITERKQAEDAINSVRTQLLSVLQTMPDMIWVKDMNGVYLLCNHTFERL 198 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMI 496 G+A + G L I F+ + + L E V + + Q + Sbjct: 199 TGMAEAEVVGKTD--LELFDIERARFFQQSDKAAIKAGECILSDEEWVVSQENGQTILLE 256 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 R P+ ++ G+++ +G+A D+TE S + I AF D LT +PNR F DRL ++ Sbjct: 257 TRKVPVIDAAGEVVGVLGVARDVTELNVSRQKIHQMAFYDPLTSLPNRSLFNDRLRQMIT 316 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + + R +M+IDID +K +ND +G VGDD+L R+ ++ D +ARL G+ Sbjct: 317 SAGSRGQ-RAGLMLIDIDHFKVVNDTMGHPVGDDLLCQAAARLNASVRDHDTVARLGGDE 375 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L + + A + L +E+ V+ S+G A + +++++K Sbjct: 376 FAILLPDISQGDDLGRIANNILDKFRERFLLDGQEVFVSCSVGIALYPDDSADANDLVKY 435 Query: 677 AELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK G N + +R+ ++ DL A+E EL L Y P + L Sbjct: 436 ADSAMYLAKRSGRNSFRFYSKDLTASAEERMRLESDLRRAIERGELELHYQPKVLLDSGA 495 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG EAL++W HP+ G I F+ +AE+ +I + ++L + + P Sbjct: 496 MVGCEALLRWRHPEMGMIPPVRFIPVAEDTGLIVELGRWVLHEACQTAAELNADSRSPH- 554 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + IN++ K L + + +I +T +++ +ES+++ + + L LR + Sbjct: 555 KVAINLSVKQFQSAGLVKSIAQIIDETGCRAEWVEIEITESLLLDQKDETLQALSELRSM 614 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII 914 G S+ +DDFGT S L+YL P DT+K + S + + + ++++I+ +A+ + +++ Sbjct: 615 GFSIAIDDFGTGYSALNYLARFPIDTLKIDRSFINSTDRRNEELVKAILSIARCLGQSVV 674 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKE 955 A+ + L GC Q + + I+ L+ Sbjct: 675 AEGVETAEQAAFLVANGCGTAQGFLYSKAVPKADIIALWLRS 716 Score = 53.0 bits (126), Expect = 3e-04, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 42/140 (30%), Gaps = 4/140 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + + E + D++++ D + +L + G Sbjct: 23 DIAEHKQAERELKKALEFAEGIIAAIPDVLFEVDEDGRYLQVWTRNPELLAQQKEMLLGR 82 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG- 507 N + + L + R+ + + W + I +++ Sbjct: 83 TVN--DVLAPDQAAIAMEALRDAGKEGVAYGRC-IRISLPNGETRWFELSIAKRPSADPA 139 Query: 508 DILRYIGIANDITEQKKSLE 527 + + DITE+K++ + Sbjct: 140 AATTLLAFSRDITERKQAED 159 >gi|332304717|ref|YP_004432568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172046|gb|AEE21300.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] Length = 960 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 163/968 (16%), Positives = 352/968 (36%), Gaps = 38/968 (3%) Query: 16 LILVLFLLWMVSPSF-AIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74 ++L++ L + + P+N+S+S ++L ++ V Q+ ++ Sbjct: 1 MLLIVMQLSQAVSAQVELTPVNVSNSAAPINLMEHSQWLV-ADNRVQLSDIQELTTWRSE 59 Query: 75 IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI-ISVTPS 133 + W L + S S I + + R+ + D R I + Sbjct: 60 FSPQPLNANQS-LWGKVTLTSES-SNKPFFISIDNPRIDALDIYILDERDRIINSYRMGT 117 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWEPNFYKDTVNSFTLY 191 + V + I +++ P + L D ++ Sbjct: 118 SRPLDNGPFAHRLFVIPLDIPYAQPRNIYVKVRDNGPLVFAFTLQTETALLDKEQRNSIV 177 Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251 +I G +++ ++ + Y + RS F + Y+ + F +V+ SG Sbjct: 178 FSLISGALAMMVLYFLVTYTLLRS---PVRFWFSVASTAYLLL-FLNSQGVVSYLSGYNA 233 Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA 311 S I + L + R I+ ++ Sbjct: 234 YIDNISTILCALLLFSLAKITFTIFRPLPTYYRYFLYATGWISAASAFVLNSYHQILLVS 293 Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-----NDI 366 ++V I Y + + LI + K L + Sbjct: 294 GAAALAVVTIAVLAIFYRYKGHHISNRMFALGLTLIALTTAAHTGLYLKWLAFPEQLSLT 353 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + ++ G+VLI + I Q D ++ + + + + + Sbjct: 354 LSALIIIGIVLIAVAIAAHEKVIAFRHYTEQQDAIRDLQQFVDMFEDAPEGRFITSLDGE 413 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + +A I G + + + ++ + +L + + L E + + Sbjct: 414 LLRANRAMAKIFGYEDVAHMKAQLDSVSTLYAQSHER--ELLLGELHKNQSTLGKEIKGQ 471 Query: 487 AADNQFHWMIIRIRPMSNSNGDILR--------YIGIANDITEQKKSLEGILCNAFQDNL 538 NQ W+++ + +S G G DI++QK + + I A D L Sbjct: 472 TRQNQPLWLLVSAQLSDSSKGLAKGDGTSSDKIIYGSILDISKQKAADQNIEYMASHDTL 531 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG RQ F RL ++ + + + T++ ++ID++K IND G GD +L ++ Sbjct: 532 TGFYQRQEFEKRLHAAINQAKQEQD-ELTLLHVNIDQFKAINDTYGHKAGDAILRQFSQL 590 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + +++ +++ RL G+ FGI+L N + + ER +++ SI Sbjct: 591 MLKIVTVDNMIGRLGGDEFGILLTGSNAQNSFMLANKLLNTVQNYDFSWEERRLSIGISI 650 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS----DRVMIKEDLCLA 714 G SW +S ++L A+ A Y AK G N + ++ + + ++ + A Sbjct: 651 GQVSWNEKVTSSEQLLSMADSACYMAKTLGRNRLHTYSSTDKQIAKYESQLSWLPRIQHA 710 Query: 715 VENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 + ++ L + + + E L++ + +EF+ AE + I+ + Sbjct: 711 LTHNGFELHMQTYMPMTSIAQGHHYEILLRLVDEHDQRVLPNEFLPAAERYNLSAKIDRW 770 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +++ + + IN++ + L + +L + + K S+I + Sbjct: 771 VIDTYFTWLNQNPQHKEDL-VRCNINLSGQSLGNQDLKLFILSAFEKYHVPHSKICFEIT 829 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891 ES+ + + + + + +G + LDDFG+ S +YL +P D VK +G + Sbjct: 830 ESMAILKLDETIEFINTFKALGCTFALDDFGSGFSSYNYLKNLPVDQVKIDGEFVKSILI 889 Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL- 950 +A++ SI +A ++ IA+ + + + EL ++G D++Q V P +++ Sbjct: 890 DSVDMAMVTSIKDIASAMKIQTIAEYVESKEIMVELGKIGVDFVQGFGVNKPAPLHTLKD 949 Query: 951 --KLLKER 956 +LLK + Sbjct: 950 DDQLLKSK 957 >gi|332528689|ref|ZP_08404666.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC 19624] gi|332041755|gb|EGI78104.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC 19624] Length = 968 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 144/608 (23%), Positives = 259/608 (42%), Gaps = 35/608 (5%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 I + + L+ + + + Q + R S Sbjct: 371 FRIIGEDGWERWLLGHAINRLEGDHLVAYGSVSDITDRKLAEQRLQDSEARFRSLTDLSS 430 Query: 416 DIVWDWDIVRDRVTT-----TPDI---ATILG---LASGSMHGPIRNWLPYIHINDRDNF 464 D W+ D + + A ILG G+++ +W Sbjct: 431 DWYWETDEQLRFIHFVGYQQNKILRSEAEILGKTRWEIGALNMSEEDW------------ 478 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + R+ E A Q +W+ I P+ ++ Y GI DI+++K+ Sbjct: 479 -AVHRQVLESRQPFRDLELLRMGAHRQQYWVSISGAPIFDARQRFRGYRGIGRDISDRKR 537 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + AF D LTG+PNR+ LDRL A + +D+D +K +ND LG Sbjct: 538 AEGETQRLAFYDTLTGLPNRRLLLDRLAQAQAACARTKR-HGALFFLDLDNFKDLNDTLG 596 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRK 639 VGD +L + +R+ L+ D ARL G+ F ++L+ + + K Sbjct: 597 HDVGDLLLKQVAQRLLSCLRESDTAARLGGDEFVVMLLELDEDENEAAAHAERVGEKILK 656 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P L RE + SIG ++ E+LK A+LAMY AK G N + F Sbjct: 657 RLNAPYELAGREHNSSPSIGLTVFSGGAQGVDELLKRADLAMYQAKAAGRNTLRFFDPQM 716 Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + + D+ AV+N EL L Y P++ + G EAL++W+HP+ G ++ F Sbjct: 717 QAAVLARAALDADMRQAVQNQELLLHYQPVVDAAGG-VRGYEALLRWNHPRRGVLAPGSF 775 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+ +I I ++L +++W + + + +N++++ + + + A+ Sbjct: 776 IGLAEQSGLILPIGQWVLRAACHQLVTWSRGLDTQGLSLAVNVSARQFRQRDFVDQVLAV 835 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 I +T +P R++L +ES+++ E + + LR G+ +LDDFGT S L+YL +P Sbjct: 836 IDETGVNPQRLRLELTESLLISEVEDAIRKMAELRARGVRFSLDDFGTGYSSLNYLKRLP 895 Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S ++ + I+R+I+ +A+++ +A+ + E L GC Sbjct: 896 LDALKIDRSFVSDVLTDPNDAVIVRTILALAQSMGLQTVAEGVETEGQRDFLRDNGCTLF 955 Query: 936 QDSHVASP 943 Q P Sbjct: 956 QGYLFGRP 963 Score = 77.3 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 8/168 (4%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDI 434 + F VI V A + + +++ ++ D +P + Sbjct: 264 GSFLDFGVILDVTAETEAALVLREQLAFIEKITSHVPLMLFLYERRGDGTEVFPFLSPGV 323 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 + G+ + +H DRD R +D+ + G +EFR+ D W Sbjct: 324 RKLFGVEAEEARRDASLLFNRLHPEDRDGVRHSMDAA-HFDGGIWSHEFRIIGEDGWERW 382 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC-NAFQDNLTGI 541 ++ ++ GD L G +DIT++K + + + A +LT + Sbjct: 383 LL--GHAINRLEGDHLVAYGSVSDITDRKLAEQRLQDSEARFRSLTDL 428 Score = 63.4 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 9/180 (5%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412 ++ +D L + V G T V+A + + + + +L Sbjct: 118 INASSLDGLRASDGRHVLLSMEDITAVRDTGGTSPSGVVAQNLANDRLAAQLDLYALTEE 177 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + W D V +P + + G + +M + IH D + + Sbjct: 178 LARVGHWSSD--GKSVYFSPGLQKMSGAQTPAML-TVEEARRRIHPEDLQIYLEA-REAM 233 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R +E+R+ + W RI NS+G L + G+ D+T + ++ + Sbjct: 234 DGR----VFEYRIMGPEGGVSWRRARIHRHCNSDGSFLDF-GVILDVTAETEAALVLREQ 288 >gi|90020307|ref|YP_526134.1| triosephosphate isomerase [Saccharophagus degradans 2-40] gi|89949907|gb|ABD79922.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 855 Score = 532 bits (1371), Expect = e-148, Method: Composition-based stats. Identities = 137/573 (23%), Positives = 255/573 (44%), Gaps = 8/573 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ A + ER LA+ G+ +WDW I + + + G+ Sbjct: 275 LISFVNITAETEAHTALEKASERLRLALDGASIGIWDWYISDAEMIWDDQMYRLYGMEPR 334 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 W H +D L + ++ + EFRV D + R + Sbjct: 335 QYISVREAWEHVAHPDDNQRVLDELGELLKTKKDTIS-EFRVLLPDKSIRHLRAYARAVL 393 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + +G + R +G+ D+T++ ++ E + AF D LT +PNR +F +L + L+ Sbjct: 394 DEDGLVQRVVGMNWDVTKEVEAEERLAHIAFTDELTSLPNRLAFSKKLKNTMKLAEKYHG 453 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++++D+D +K IND G VGD ++ + R+ E+L + LAR+ G+ F +IL + Sbjct: 454 -KVAMLIVDLDHFKDINDSYGHPVGDSLICEVVTRLKEVLVGDEYLARIGGDEFALILDN 512 Query: 624 ENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ ++K +A PI L + S+G A + + ++K A+LAM+ Sbjct: 513 VRSHDAALHYSRRIQKIMAEPIYLMEGPVVNARVSMGVALFPDDGEDAVALIKAADLAMH 572 Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N V ++ S ++E+L A+ + EL L Y PII L E+IVG EA Sbjct: 573 QAKKSGRNTVLPYKQEYSSSLEKKIFLEEELRSAIRDEELMLYYQPIIDLSTEKIVGCEA 632 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W +S +F+ +AEE +I + ++ + + W+ +I +N+ Sbjct: 633 LLRWIDRAGKFVSPVDFIPVAEESGLIYELGNWINATAFKQLKLWQTLHTDMK-YISVNV 691 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L + + + +Q L+ P I+L +E + ++ L L ++G L + Sbjct: 692 SPHQLQNADFVKDIQRLLDIHNVDPRHIQLEITEGTFLQESLNTQSQLRILGEMGFRLAI 751 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL D +K + S + I+++II M ++ + + + Sbjct: 752 DDFGTGYSSLAYLKRFAVDVIKIDRSFVMDLEDDPADRDIVKAIIAMTTSLGFDTLVEGV 811 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + +GC Y Q P + + Sbjct: 812 ETREQSLIVGALGCGYGQGYLYGKPTFADDYAE 844 >gi|254459357|ref|ZP_05072778.1| ggdef domain protein [Campylobacterales bacterium GD 1] gi|207083970|gb|EDZ61261.1| ggdef domain protein [Campylobacterales bacterium GD 1] Length = 744 Score = 532 bits (1371), Expect = e-148, Method: Composition-based stats. Identities = 138/584 (23%), Positives = 264/584 (45%), Gaps = 18/584 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + Q + +Q + D V D+ + +L Sbjct: 166 AVRMIGTHRDITNIQEMQLKYSQQVQIIEQIHDSVISTDLNGYITSWNKGSQILLEYTEE 225 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 M + D + + + G + R+ ++ + + + Sbjct: 226 EMLTKHVS--SLFLEEDHKALQEGTQELIKH--GEYHADKRLVKKSGDIIFVSLSLSILK 281 Query: 504 NSNGDILRYIGIANDITEQKKSLEGI-------LCNAFQDNLTGIPNRQSFLDRLTTILD 556 + G+ +G DIT++K++ E + A D LT +PNR F +RL ++ Sbjct: 282 DEKGNPTALVGYCQDITKRKEAEEKLYEQKNILHYQAHHDELTQLPNRTFFNERLEQAIE 341 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + + + ID+D +K+IND LG VGD VL R+ ++ D L+RL G+ Sbjct: 342 KAKRN-KTLIALFYIDLDHFKQINDSLGHEVGDIVLKITAERLKNKIRKEDTLSRLGGDE 400 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +I+ N + ++ A + + + PI + + +++SIG + + + +LK Sbjct: 401 FTLIIEELNIAKDVSLLAQKIIEDLEKPIYIDTHTLYISSSIGISIYPDDDTDAKNLLKY 460 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK G N+ + + + V ++ L A++N E + Y P + + Sbjct: 461 ADSAMYKAKEEGRNNFQFYSSEMTELAFEHVAMEASLRQALQNEEFVVYYQPQMDGRTDR 520 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG+EAL++W+HP G + +F+ IAE+ +I I+ ++++ ++W P + Sbjct: 521 LVGMEALVRWNHPTLGLVQPYKFIPIAEKNGLIVQIDQWVMKSAMTQFVAWYKDGLNPGV 580 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N+A K L + + M L+ T P I+L +ES +M NP+ + +L ++ ++ Sbjct: 581 -LAMNLAVKQLQKKDFIDTMSNLLKSTQCKPEWIELEVTESQIMTNPQEAIKILKQISEM 639 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 GI L +DDFGT S LSYL +P D +K + + + E+ + I +S+I ++K++ Sbjct: 640 GIELAVDDFGTGYSSLSYLKRLPIDKLKIDRTFIQDLPDDEEDVGITKSVIALSKSLNLK 699 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKE 955 +IA+ + + L GC IQ + P+ N + + LK Sbjct: 700 VIAEGVETDEQKNFLVENGCQNIQGYLYSKPITANEMKERFLKN 743 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 7/145 (4%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 ER LA+LGS D +WDW+I D + +P +LG + + +W +H D + Sbjct: 61 HERIELALLGSNDGLWDWNITDDSIYFSPRWKEMLGFKDDELPNEMPSWQDRVHPEDLQS 120 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 ++ + + R+R + + W + R + + NG +R IG DIT + Sbjct: 121 ALDEIEKNINGETDYYENIHRIRHKNGDWIWTLDRGKVQLDENGKAVRMIGTHRDITNIQ 180 Query: 524 KSLEGILCNAF-----QDNL--TGI 541 + D++ T + Sbjct: 181 EMQLKYSQQVQIIEQIHDSVISTDL 205 >gi|307822245|ref|ZP_07652477.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307736811|gb|EFO07656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 742 Score = 532 bits (1371), Expect = e-148, Method: Composition-based stats. Identities = 143/562 (25%), Positives = 247/562 (43%), Gaps = 10/562 (1%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + + + L + + D ++ + G + + L N Sbjct: 182 VQELQLAATIYLALDEAIMVADANNQIISVNEAFTRLTGYTAAEAINQSTSLLKSGRQN- 240 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F + + G Q E + + I + + G+++ + + +DIT Sbjct: 241 -EAFYQEMWHLL-NTTGHWQGEIWNLRKNGGEFIGWLSISTIYSDTGEVVHRVAMFSDIT 298 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++K++ + I A D LTG+PNR+ F DRL + + + + V+ +D+D++K IN Sbjct: 299 DKKQTEDIIRKQADFDLLTGLPNRRLFYDRLQQAIKKAKR-EGQKLAVLFLDLDQFKDIN 357 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L + +R+ ++ D LAR G+ F IIL + + I A + S Sbjct: 358 DTLGHEIGDRLLNEVAQRLDACIRDSDTLARPGGDEFIIILDNLDEFNSIERVANCILGS 417 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +A+P L V+ SIG + + E++K A+ AMY AK +GG F S Sbjct: 418 MALPFQLEHESCYVSLSIGITLFPDDAVVVDELVKKADQAMYAAKRQGGKRFCYFAPSMQ 477 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ I DL A+ N + ++ Y PI+ L +I EALI+W HP G IS +EF+ Sbjct: 478 AAADSRLRITNDLRNALANQQFWVAYQPIVDLATGDIHKAEALIRWQHPTQGLISPAEFI 537 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQAL 817 IAE+ MI I ++ + A+ ++ WR + + P I +N + ++ G Sbjct: 538 PIAEDTGMIVEIGEWVFHQAAKQVLKWRSK-HHPHFQISVNKSPVQFESQHDNINGWFEH 596 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + I + +E ++M L R G+ ++LDDFGT S +SYL Sbjct: 597 LQHLELPGASITVEITEGLLMDASSIVSEKLLIYRDTGMQVSLDDFGTGYSSMSYLKKFD 656 Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + T + ++I MA + +IA+ I L + GCDY Sbjct: 657 IDYLKIDQSFVRNVTTDSTDRTLCETMIMMAHKLGMKVIAEGIETAEQRDFLMQAGCDYG 716 Query: 936 QDSHVASPLGFNSILKLLKERF 957 Q + P+ L R Sbjct: 717 QGYLFSRPVPAEEFELLFHPRN 738 Score = 41.9 bits (97), Expect = 0.55, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 8/160 (5%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 LV +++ ++ A ER + + + Sbjct: 39 LVHELLVHQVELVMQNEALQEARATTEIALERYTELFDFAPTAYFTLAADGGIHQANFRG 98 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG+ G + + ++ ++ R F+ L++ + Q E ++ W Sbjct: 99 ELLLGIERGKIV--RKQFINHVSGEYRQVFKRFLETVFTGEGAQ-QCEITLQ-VGGIPIW 154 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + I + + DI+EQK++++ + A Sbjct: 155 VSIEATV----DASRKTCLASMIDISEQKRNVQELQLAAT 190 >gi|78776728|ref|YP_393043.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans DSM 1251] gi|78497268|gb|ABB43808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas denitrificans DSM 1251] Length = 707 Score = 532 bits (1371), Expect = e-148, Method: Composition-based stats. Identities = 146/545 (26%), Positives = 263/545 (48%), Gaps = 10/545 (1%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 S D + D + V+ + G + + G L D + ++ + S + Sbjct: 169 SSDGIVITDKNNNIVSVNKSFEKLTGYSKEEIIGKNPKLLSS-GWGDEEFYKNMWSSLLS 227 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + E R D + + I + + N DI+ YIG++ DITE K E I A Sbjct: 228 N--DLWRDELWDRKKDGSLYAIEQTIICVRDKNQDIVNYIGMSRDITEAKNKEEKIHQLA 285 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 F D LT +PN + F + + S +N ++ +D+D +K +ND LG +GD +L+ Sbjct: 286 FYDFLTKLPNAKLFQQEVEAYIK-STHYNNETFAILFLDLDNFKWVNDSLGHQIGDLLLI 344 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + ++ E++ I++RL G+ F I+ EN I+ A + S+ PI + RE+ Sbjct: 345 EIAAKLKEIISQDSIISRLGGDEFVILAPYENLLT-ISQLANTILCSVKDPIKVQNREVN 403 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--L 711 V+ SIG + + + +++LKNA+ AMY +K+RG N F + ++ D L Sbjct: 404 VSWSIGISLYPQNGENYNDLLKNADAAMYESKNRGKNTFRYFNDMMNQDAMYRLELDTKL 463 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+ N+ +L Y P + +G+EALI+W G I+ +F+ IAEE I I Sbjct: 464 RYAITNNSFFLNYQPKYSFEHGKTIGVEALIRWIDKDLGFIAPDKFIPIAEESSYINEIG 523 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 +++++ D+ + PI I IN++ K L + + L+ ++ PS ++ Sbjct: 524 SWVMKQALNDLKIINSKL-SSPISISINVSGKQLEHESFYDEARTLLKESGIEPSLVEFE 582 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-- 889 +E+ +M N + +L +++ +G+ +++DDFGT S +SYL +P DT+K + + Sbjct: 583 ITETSIMQNIDHVVDILKKIKMLGVKISIDDFGTGYSSMSYLKKLPIDTLKIDREFIKEL 642 Query: 890 GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 E +I+ +II +AK+ + T +A+ + E L + CD Q + PL + + Sbjct: 643 EIDEDSKSIVNAIIALAKSFKLTTVAEGVENEEQKLILDGLNCDMTQGYLYSRPLSLDDL 702 Query: 950 LKLLK 954 L L Sbjct: 703 LAFLS 707 Score = 88.5 bits (218), Expect = 5e-15, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 1/125 (0%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A + W +I + + + + I GL + N+ ++H +DR Sbjct: 41 AQEIAQIGHWKLNINTNELFWSDETYRIFGLKPKEVKPSYENFFTFVHEDDRSLVNDAYI 100 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + R+ D + ++ R + +G++++ IG +DITE+ + + + Sbjct: 101 KSLE-DKSPYSIIHRIITKDKKLKYVEERCVHKLDESGNVVKSIGTVHDITERVEHEKEL 159 Query: 530 LCNAF 534 + Sbjct: 160 EIASN 164 >gi|26986961|ref|NP_742386.1| sensory box protein [Pseudomonas putida KT2440] gi|24981574|gb|AAN65850.1|AE016213_6 sensory box protein [Pseudomonas putida KT2440] Length = 631 Score = 532 bits (1371), Expect = e-148, Method: Composition-based stats. Identities = 149/622 (23%), Positives = 280/622 (45%), Gaps = 13/622 (2%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A+ ++ + + + + + L L + + V VL+ L+ + +L Sbjct: 13 ALYVVLSILWLALAEVMLHSMTDDPLALTVGRQINVVVWVLLSALLIYVSRVRLLNFIGH 72 Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + D ER +A + + V D V I G + G + Sbjct: 73 GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSK 132 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 H ++ + + +G E R + + I + + G++ Y Sbjct: 133 FKSGHHG-LAFYQEVFATLAE--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHY 189 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + +DI+ K S + + A D LTG+PNR F DRL L + + ++++D Sbjct: 190 VAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRG-CALLLLD 248 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D ++ IND LG +GD +L + R+GE+L LARL G+ FG+++ + + Sbjct: 249 LDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGK 308 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + + P + ++AS+G + + S + + ++L+NA+ A+Y AK G Sbjct: 309 LAQCIIERMREPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACY 368 Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + ++ +L A+E EL + + P+ L VG+E L++W HP+ G Sbjct: 369 ALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRG 428 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + EF+ IAE +I I+ ++L + R ++ W+ Q F+ +NI+S+ +EL Sbjct: 429 LVPPGEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAQGRQLA-FVGVNISSRLFGQHEL 487 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ T +P+ ++L +ES VM +PE + L RLR++G++L +DDFGT S L Sbjct: 488 YRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSL 547 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 L +P +K + + G E IAI+R II +A+++ + A+ I L Sbjct: 548 LRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLL 607 Query: 929 RMGCDYIQDSHVASPLGFNSIL 950 + C Q P+ + Sbjct: 608 QEECQLGQGYWFGRPVPAEDLR 629 >gi|313202137|ref|YP_004040795.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441453|gb|ADQ85559.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 923 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 149/604 (24%), Positives = 273/604 (45%), Gaps = 20/604 (3%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-------QSLAVLGSGD 416 N V +L V+L+ +Q ++ + ++ R ++ + Sbjct: 315 NTRWIAFGVAATLLCVMLVILWNVQMRRQVRMRTEALHAEIARREQTEAYLKISSRMARV 374 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W + + + ++ I + + L + R L+ + + Sbjct: 375 GSWVLSLPEKTLYWSEEVLDIHECPP-EFAPTLDSALAFYPEEWRSRIVQALEECL-QKG 432 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 E + ++ W+ I + + + +G+I R G DI+ QK + I AF D Sbjct: 433 DSFDEELPILTCKDKLLWIRIIGQAVYDLHGNITRIEGAIQDISAQKVAESRIQHLAFYD 492 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +LT +PNRQ F+DRL L SA V+ ID+D +K +ND +G +GD +L + Sbjct: 493 SLTSLPNRQLFIDRLEHTLAYSARTSK-SGAVLFIDLDNFKTLNDTMGHDLGDMLLQQVA 551 Query: 597 RRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIAMPINLLERE 651 RI L+ D +AR G+ F ++L + + + + + S A P E Sbjct: 552 MRIAGCLRESDTVARFGGDEFVVLLHELSGNHQEAAAQARLVSEKILISFAHPFQFSGYE 611 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 +ASIG + T E+LK A+LAMY +K G N + F +DRV ++E Sbjct: 612 HHTSASIGVTLFDQQPTTVDEILKRADLAMYQSKAAGRNVIRFFDPEMQALIADRVEMEE 671 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 DL + N E +L Y P + ++G EAL++W +PK G I S F+ +AE+ +I + Sbjct: 672 DLRNGLRNDEFFLCYQPQVDNQ-GRLLGAEALLRWRNPKRGMIPPSTFIPLAEDSGLIVS 730 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 + +++ + ++ W Q + + +N+++K L + + + +++ T +P R+K Sbjct: 731 VGNWVMYAACKQLVLWAQQPLTSSLTLAVNVSAKQLRQMDFVDQIVEVLNVTGANPKRLK 790 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES+++ N E + L+ IG+ ++DDFG S LSYL +P D +K + S + Sbjct: 791 LELTESLMVNNIEDVIAKMTELKNIGVGFSIDDFGIGYSSLSYLKLLPLDQLKIDQSFVR 850 Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 + I R+II + K++ +IA+ + + L GCD Q + P+ + Sbjct: 851 DVLTDPNDAVIARTIIALGKSLNLQVIAEGVETLSQREFLDNYGCDAYQGYLFSKPVPAD 910 Query: 948 SILK 951 + Sbjct: 911 EFER 914 >gi|83310380|ref|YP_420644.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82945221|dbj|BAE50085.1| Predicted signal transduction protein containing a membrane domain [Magnetospirillum magneticum AMB-1] Length = 831 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 136/568 (23%), Positives = 256/568 (45%), Gaps = 14/568 (2%) Query: 398 QGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + ER SL + + ++ D + P I G A+ G L Sbjct: 22 EELSQQVERLSLYQAVFDNAFEGMFATDAANRIIAVNPAFTAITGYAAEEAIGNDPRMLS 81 Query: 455 -YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 H D ++ + D G+ Q E R D + + + I ++G + R I Sbjct: 82 SGFH--DPAFYQEMWDQL--STTGQWQGEVVDRHKDGRPVRLWLSITSQRGADGKVARRI 137 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + D+TE +++ E + + D LT +PNR FLDRL L L+ + + ++ I + Sbjct: 138 AVFRDVTEARETAEQLWQRSNFDPLTELPNRNLFLDRLLQALVLAGR-EGSKVAMLFIGL 196 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K IND LG +GD VL RR L+ D AR G+ F ++L + ++ Sbjct: 197 DGFKNINDSLGHWIGDKVLQEAARRFQNCLRQGDTAARFGGDEFTVVLSGVRATAEVEAV 256 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 ++ + + P + I ++ SIG W +++NA A+ AK G N Sbjct: 257 IRSVLEVLQEPFVVEHHHILISCSIGVCMWPGDGEDVDSLMRNATAALQQAKQAGRNTFR 316 Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + R + ++L A+ E +LV+ P++ + ++ EAL++W + G Sbjct: 317 FFTPAMDARAQARSRLADELSGALSQGEFHLVFQPLVDVKSGKVNAAEALLRWHNRYLGV 376 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S +F+ +AEE+ +I+ I ++L R+ + W+ I I +NI+ + ++ Sbjct: 377 VSPDQFVPLAEEIGLIRPIGEWLLTAACREALVWQGMGLGE-INIAVNISPRQFQQGDIV 435 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ + T P + + +E +++ N E + +R +G+SL++DDFGT S LS Sbjct: 436 GIIRRALEDTRLPPWLLTIEITEGLLLSNGEEILAKMEAIRTLGVSLSVDDFGTGYSSLS 495 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P D +K + S + ++ +II + ++ ++A+ + + + +T Sbjct: 496 YLKSFPVDVLKIDRSFIADMGDHSDDATMVEAIIALGHSLHLEVVAEGVETKQQLDFITA 555 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957 GCD Q + + PL + + ER Sbjct: 556 QGCDVAQGYYFSPPLSGPRFREFVLERL 583 >gi|217962790|ref|YP_002341366.1| sensory box/GGDEF family protein [Bacillus cereus AH187] gi|217065868|gb|ACJ80118.1| sensory box/GGDEF family protein [Bacillus cereus AH187] Length = 909 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 173/870 (19%), Positives = 351/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNLKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 + + +V L Y D F +NL L + L S+LI++ Y + Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR++F + + S + VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G Sbjct: 575 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 N L E + +I+ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL + +K L++ Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 903 >gi|229033933|ref|ZP_04188887.1| Sensory box/GGDEF [Bacillus cereus AH1271] gi|228728359|gb|EEL79381.1| Sensory box/GGDEF [Bacillus cereus AH1271] Length = 909 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 169/868 (19%), Positives = 351/868 (40%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F + + Sbjct: 52 SYILYFSNRKEGLPRLFWTILSVGTLSYFIGDIVVAYQRLILKDYYTF----VDASDFFY 107 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 ++ + + +Y + L+ I + A F +Y++ ++ + + Sbjct: 108 LLFLISFAFAFLY----EIIYNRDLLEKLF-MICDICIIVTAQFTLSYYLLIERTIHVSS 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D F +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMADLLFFLIGINLLFKPLSLLSKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + + ++ + + + Sbjct: 223 YFTPEYSMFTVTPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + M + + +++ L+ + Q L T Sbjct: 283 LIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRRQNKILLLAQMQFNSELEKQIELRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + ++ D + + + + E R + +++ + P+ N I Sbjct: 401 YYSLMYEEDLEEIISAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKN-HISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F + + S VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEVSKR-PFAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ L LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERLSTPNMKLARLAGDEFTILIENYKKRPDVK 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G N Sbjct: 577 KIADTIVVAMNEPFEIENQHLHISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL LA+ N E YLVY P I + ++I+G EALI+W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALIRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ N+ Sbjct: 697 GDIPPCEFIPIVEETPQVVPLGHWVLKESCRQLKIWH-TFGYQDLKISVNLSAKEFQQND 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + +++ P + L +E + M + + + L +L++ GI ++DDFGT S Sbjct: 756 LISDISQILTDVNVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL + +K L++ Sbjct: 876 QKNNCKYMQGYYFSKPLTSHQFIKFLQK 903 >gi|171058506|ref|YP_001790855.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170775951|gb|ACB34090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 1069 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 147/587 (25%), Positives = 278/587 (47%), Gaps = 13/587 (2%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTT 431 VL I F VL T + +R L S + ++ D + +T Sbjct: 467 AVLSARRIVFQGRDAVLTTLAPINHLKQLEQRLELWAKVFETSSEGIFIVDAQQRILTAN 526 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 + G + G L + R ++++++ RG Q E R+ Sbjct: 527 WALTRSTGHDLIELMGGDPAEL-LAGADARQTWQSLVERV--QTRGSWQGEVRICRRAGG 583 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + + + G + ++ + DIT++K+S I A D LT +PNR ++RL Sbjct: 584 DYPAWLLANAVRDRAGHVSHWVCTSIDITDRKESERRIRFLAEHDVLTELPNRALCIERL 643 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 L + + V+ ID+D++K IND LG VGD +L S+ +R+ + ++ D ++R Sbjct: 644 RLALQQARRTGQ-KVAVLFIDLDRFKNINDSLGHHVGDGLLRSVAQRLVDGVRAGDTVSR 702 Query: 612 LSGNRFGIILISENNSLKIADFA-IAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 L G+ F ++L + ++A + + P + EI V+ S+G + + Sbjct: 703 LGGDEFVVVLNGLADIEEVAHVVEQRLIPRVRQPHGVQGAEIHVSCSVGISVFPDDAQDI 762 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPII 728 E+++ A++AMY AK +G N + F + + + + L AV +L L Y P I Sbjct: 763 DELMRQADVAMYQAKAQGRNGAQFFTAEMNQRAQARLMVENHLRSAVAQGQLSLHYQPRI 822 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 + D + G+E L++W P+ G++ F+ +AEE +I I +++E I WR Q Sbjct: 823 HVADGRVAGVEGLLRWHSPELGHVPPDRFIPVAEETGLIIEIGAWVIEAACAQIERWRGQ 882 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + + IN+++ L D L + ++A + + P +++L +ES++M + + L Sbjct: 883 GLQE-VAVSINLSALQLRDPGLLDVLRASLERHAVPPGQLELELTESILMDQVDAHLVTL 941 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 LR++G+ L++DDFGT S L+YL P D +K + S + + +AI+++II + Sbjct: 942 HALRELGLRLSIDDFGTGYSSLNYLTRFPIDQLKIDRSFVRDMLDDPRDLAIIKAIIGLG 1001 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + ++A+ + E++++ L GCD +Q H A P+ ++ L Sbjct: 1002 HTLGLKVVAEGVERELEVQALRAAGCDELQGYHFARPMAADTATAWL 1048 >gi|254000173|ref|YP_003052236.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253986852|gb|ACT51709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 950 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 149/604 (24%), Positives = 273/604 (45%), Gaps = 20/604 (3%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-------QSLAVLGSGD 416 N V +L V+L+ +Q ++ + ++ R ++ + Sbjct: 342 NTRWIAFGVAATLLCVMLVILWNVQMRRQVRMRTEALHAEIARREQTEAYLKISSRMARV 401 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W + + + ++ I + + L + R L+ + + Sbjct: 402 GSWVLSLPEKTLYWSEEVLDIHECPP-EFAPTLDSALAFYPEEWRSRIVQALEECL-QKG 459 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 E + ++ W+ I + + + +G+I R G DI+ QK + I AF D Sbjct: 460 DSFDEELPILTCKDKLLWIRIIGQAVYDLHGNITRIEGAIQDISAQKVAESRIQHLAFYD 519 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +LT +PNRQ F+DRL L SA V+ ID+D +K +ND +G +GD +L + Sbjct: 520 SLTSLPNRQLFIDRLEHTLAYSARTSK-SGAVLFIDLDNFKTLNDTMGHDLGDMLLQQVA 578 Query: 597 RRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIAMPINLLERE 651 RI L+ D +AR G+ F ++L + + + + + S A P E Sbjct: 579 MRIAGCLRESDTVARFGGDEFVVLLHELSGNHQEAAAQARLVSEKILISFAHPFQFSGYE 638 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 +ASIG + T E+LK A+LAMY +K G N + F +DRV ++E Sbjct: 639 HHTSASIGVTLFDQQPTTVDEILKRADLAMYQSKAAGRNVIRFFDPEMQALIADRVEMEE 698 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 DL + N E +L Y P + ++G EAL++W +PK G I S F+ +AE+ +I + Sbjct: 699 DLRNGLRNDEFFLCYQPQVDNQ-GRLLGAEALLRWRNPKRGMIPPSTFIPLAEDSGLIVS 757 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 + +++ + ++ W Q + + +N+++K L + + + +++ T +P R+K Sbjct: 758 VGNWVMYAACKQLVLWAQQPLTSSLTLAVNVSAKQLRQMDFVDQIVEVLNVTGANPKRLK 817 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES+++ N E + L+ IG+ ++DDFG S LSYL +P D +K + S + Sbjct: 818 LELTESLMVNNIEDVIAKMTELKNIGVGFSIDDFGIGYSSLSYLKLLPLDQLKIDQSFVR 877 Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 + I R+II + K++ +IA+ + + L GCD Q + P+ + Sbjct: 878 DVLTDPNDAVIARTIIALGKSLNLQVIAEGVETLSQREFLDNYGCDAYQGYLFSKPVPAD 937 Query: 948 SILK 951 + Sbjct: 938 EFER 941 >gi|94263467|ref|ZP_01287280.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1] gi|93456197|gb|EAT06336.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1] Length = 935 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 142/586 (24%), Positives = 252/586 (43%), Gaps = 17/586 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + ++ +++ E + + + D V+ A G Sbjct: 347 MLESLAEYLAPLLAARLESRRAEELVARILETIDEGFIIIDHEFKIVSANRAYAESAGYP 406 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIR 498 + G + H D+ + D V + A + ++ + Sbjct: 407 LAEIIGRHCYQVS--HQIDQPCYLNGEDCAVQHVFNTGEPRTAVHTHYTAAGEPLYVETK 464 Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 P+ + G + R I + DIT++K + I AF D LT +PNR+ F DRL + Sbjct: 465 AYPLERDDLGTVRRAIEVVTDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAISA 524 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 SA V+ +D+D +K +ND G VGD +L +RI E ++ D ++R G+ F Sbjct: 525 SARSGQ-HGAVLFLDLDNFKTLNDTRGHDVGDLLLTMAAKRIQETVREDDTVSRQGGDEF 583 Query: 618 GIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 ++L + + A A +R ++ P +L E + SIG + + E Sbjct: 584 MVLLNNLSPDRHAAISQAGRVAEKIRAALDQPFDLDGYEHHIGVSIGIGLFMGHDTSVDE 643 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730 +LK A+ AMY AK+ G N V F + DL A+ + L Y P Sbjct: 644 LLKRADAAMYQAKNAGRNQVRFFDPEMQAELEQASALVMDLRQAIWQGQFQLHYQPQTA- 702 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 D I+G EAL++W HP+ G +S +F+ +AEE +I AI ++L+ + +W D Sbjct: 703 NDGRIIGAEALLRWTHPERGPVSPMQFIPLAEESNLILAIGRWVLQEACGQLAAWADLPA 762 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + +N++++ E ++ +++ T P +KL +ES+VM + + Sbjct: 763 AGNCKLAVNVSARQFRQPEFVAEIRRILAATGADPKLLKLELTESIVMTELADTVSKMHE 822 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 LR +GI ++DDFGT S L+ L +P + +K + + + AI+ +II M + Sbjct: 823 LRDLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMGRT 882 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 ++ +IA+ + + + L R GCD Q + P+ LL Sbjct: 883 LDFQVIAEGVETKEQLATLARYGCDAYQGYLFSRPVPAAKFAHLLS 928 Score = 44.6 bits (104), Expect = 0.083, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 15/173 (8%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A + +R + D AT+LG ++ R Sbjct: 51 ALRKSQLELEESRDRYVELYDFAPVGYVTLDPKGRIREANLTAATMLGSERSRLYQ--RG 108 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII--RIRPMSNSNGDI 509 ++ + + L + R R + E ++ D + + R + +G+ Sbjct: 109 LGRFVSQECLEPWYLHLAAA-RQRDDRQECELLLQRDDKKTTFFAHLASKRVVKEESGE- 166 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 DIT++K++ A L +F +R+ I ++ Sbjct: 167 RFIHTTLTDITQRKET--ETELAAHHRKL-------AFRNRIAQIFLTRGHEE 210 >gi|152992783|ref|YP_001358504.1| hypothetical protein SUN_1192 [Sulfurovum sp. NBC37-1] gi|151424644|dbj|BAF72147.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1223 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 138/558 (24%), Positives = 264/558 (47%), Gaps = 17/558 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 Q+ + D V D+ + +LG + M G + ++ D + + Sbjct: 670 QAQILEQIHDAVISTDLDNKIIHWNHGATELLGYDASEMIGRN---IDILYPED-ELKKA 725 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-- 524 G + + R + + + + + + + I+ + DI+++K+ Sbjct: 726 QWMKMQTLLYGSYRDQIRKQTKEGKMIYTDVSASVLRDEKKRIIGITRYSQDISQKKEIE 785 Query: 525 -----SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + + A+ D LT +PNR F DRL + + N + V ID+D +K I Sbjct: 786 LELLEQTKQLNFQAYHDPLTQLPNRTLFNDRLEQTITYAHRH-NEKFGVFFIDLDNFKLI 844 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +GD+VL ++ R + ++ D L+RL G+ F +++ N A A M Sbjct: 845 NDTLGHHLGDEVLKIVSHRFSKCIREEDTLSRLGGDEFTVLVHELNTPESAAKIAGKMMG 904 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 S+ + + + + VTASIG + + + +++LK A+ AMY AK G N+ + + Sbjct: 905 SLKEEVVVEGQTLHVTASIGISLYPRDAVYKNDLLKYADSAMYKAKEVGRNNYQFYSSEM 964 Query: 700 F--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 ++ ++++L A+ ++L + Y P I + +VGLEAL++W+HP+ G I F Sbjct: 965 TNLAMEKATMEKELRKAIAKNQLRVYYQPQINARNRSVVGLEALVRWEHPEKGLILPDAF 1024 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I+ ++ +++ + D++ W P I + +N+ L+ +Q Sbjct: 1025 IPLAEETGLIREMDYYVMHQAMSDMVEWYHIGLNPGI-LSLNLPISQLMKENFFYTLQNT 1083 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 I KT + + +E+ VM NP+ S L L ++GI +++DDFGT S L+YL +P Sbjct: 1084 ILKTGFKVKWLTFEITETQVMLNPKHSIKKLYMLNQMGIKISIDDFGTGYSSLAYLKRLP 1143 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI ++I +A+++ IIA+ + ++ L GC I Sbjct: 1144 VDKLKIDKTFIFDLPYNTEDCAITNAVIALAESLHLEIIAEGVEHRDQVRYLLENGCYII 1203 Query: 936 QDSHVASPLGFNSILKLL 953 Q H + P+ + + L Sbjct: 1204 QGYHYSRPIPKQEMTQYL 1221 Score = 76.9 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 6/150 (4%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLAS 442 +Q + E Q A+ W+ D+ + + I L Sbjct: 403 MQEAQKEFQKLEEKTRVIEAQKEALHRIQQIGHFGSWEIDLKHNTAQWSKRSYDIYQLDP 462 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + +L + DR L S + + RVR D + ++I + + Sbjct: 463 ENTQPTLDTFLSRVVKKDRHIAYEGLRSLQDGKVKSVS--LRVRREDGEIITVLINAKML 520 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532 + G+ R +G DITEQ + + Sbjct: 521 FDKQGEPDRIVGTTLDITEQLRLKQENKEL 550 >gi|126659426|ref|ZP_01730560.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110] gi|126619262|gb|EAZ89997.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110] Length = 643 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 157/580 (27%), Positives = 278/580 (47%), Gaps = 13/580 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIR 450 Q + +R + D+VW +++ T+ G + Sbjct: 64 ELRMNEQALRLSQKRLHSILGSIDDVVWSIVPQTNQILYLNHATETVYGRPITDFLDNLN 123 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W I+ +D+ + + Y+ G E+R+ + HW+ +R R + ++ + + Sbjct: 124 LWTEIIYPDDQQRVKES--QQLLYKTGIQDIEYRILWPNQTIHWIRVRSRLIKDNQENPI 181 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 R G+ +ITE K+ E + +A DNLTG+PNR +DRL L DDN R V+ Sbjct: 182 RIDGLTTEITEHKQIKEQLRHDALHDNLTGLPNRTLLMDRLEQGLKRCQRDDNRRFAVLF 241 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D++K IND LG GD +L+ L+ R + L+ D L+RL G+ F I+L + +N + Sbjct: 242 LDLDRFKLINDSLGHLTGDQLLIVLSHRFSQCLRAEDTLSRLGGDEFVILLENLSNIDEA 301 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-----SKITSSEMLKNAELAMYHAK 685 A + + PI L EI ++ SIG + +E+L++A+ AMY AK Sbjct: 302 IAIADRIHNILKEPILLQSEEIFISVSIGIVFGGEKPVYNNPDQVAELLRDADTAMYRAK 361 Query: 686 HRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G E F+ S + +L A+E E + Y PII L + I G EAL++ Sbjct: 362 AKGPGTSEVFQPSMHTHVVKRLQVANELQKAIEREEFIVYYQPIISLESDRIDGFEALVR 421 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIAS 802 W H + G I+ ++F+ IAEE I I+ ++L + W+ Q P+ + +N++S Sbjct: 422 WQHQEKGLIAPTDFIPIAEETEAILKIDKWVLRHACTQLGLWQQQFPNIQPLTMSVNLSS 481 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K L + E + ++++T +KL +ES VM +L +++ I L LDD Sbjct: 482 KHLTKPDFIEVLDKILAETGLREKSLKLEITESFVMEQSPTVLDILDEIKQRKIELCLDD 541 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL F+ +K + S + + ++++I+ +A + ++A+ + Sbjct: 542 FGTGYSSLSYLDCFSFNILKIDRSFIKRLVGENDKCEMIKAIVNLAVTLNMKVVAEGVET 601 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 + +L + C Y Q + PL +I +LL+++ ++ Sbjct: 602 NVQRDKLKALKCSYGQGYGLFPPLDSQTISRLLEKQNTII 641 >gi|152993212|ref|YP_001358933.1| signal transduction protein [Sulfurovum sp. NBC37-1] gi|151425073|dbj|BAF72576.1| signal transduction protein [Sulfurovum sp. NBC37-1] Length = 958 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 150/586 (25%), Positives = 278/586 (47%), Gaps = 11/586 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDG--ERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 ++ I + +IQ++ + I ++ + GD + D + ++ P Sbjct: 371 IVPIFMDGELIQYLAIKLDVTAYIRQQKILQQAATVYENIGDGIVITDENKKIISINPAF 430 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 + + G + G + + D+ + + + GR D + Sbjct: 431 SDLFGYTKEELVGKEPMIIMSL-KEDKVFYGNMWHQLLT--AGRWSGRVENVTKDGKVLP 487 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + N DI YI I ++ E K A+ D+LTG+PNR SF R+ I Sbjct: 488 VWLTIAVVRNEKQDIQNYIAIYTNLEEIIKMETKANYLAYHDSLTGLPNRSSFEMRINEI 547 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L ++ + + V+ ID+D++K IND LG +GD++L+ L RI L +LAR+ G Sbjct: 548 LSVADI-EKDKIAVLFIDLDRFKVINDTLGHHIGDEMLIELAHRIQTQLDNDTLLARIGG 606 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F +I+ + + + + A + I PI++ + TASIG A + +E++ Sbjct: 607 DEFVVIMKLKMHKKEAGEQAEKLLDVIREPIDIQNYHLNTTASIGIAIYPDDGKDKNEIV 666 Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+A+ AMYHAK +G + + + R+ ++++L A+E EL L + P L Sbjct: 667 KHADSAMYHAKEKGKDTFQFYTKQLSLDVEARLNLEQELLHAIERKELLLHFQPQYALES 726 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I+G+EAL++W + + G +S +F+ IAEE +I +I F+ E + + W+ + Sbjct: 727 RNIIGVEALLRWKNEQLGIVSPEKFIGIAEETGLIVSIGYFVFEEACKTYMHWQKEGIDI 786 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I IN++S + ++ E +Q +I + +I++ +E +M + +L LR Sbjct: 787 D-SISINMSSIQFREEDIFERLQEIILRIGIPAHKIEIEITERFIMEYSTINLTILEDLR 845 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AIL-RSIIPMAKNIE 910 IG +++DDFGT S +SYL + DT+K + S +T A++ ++II ++K++ Sbjct: 846 NIGCKISIDDFGTGYSSMSYLKRLALDTIKIDKSFITDLPHDSHDAMVSKAIIALSKSLG 905 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +IA+ I L + GCD Q + A P+ + E Sbjct: 906 YQVIAEGIETPEQEAFLKKNGCDIGQGFYFAKPMTSEDFISFFNEY 951 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 12/166 (7%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + G ++ L+ F +I + ++ + + A+ S +++ D R Sbjct: 250 IGIGFFVLAFLMLFLLILSYIRVKKNAKELLA----FRYAIENSDNVIVITDAQRHIEYV 305 Query: 431 TPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 G + G N L + N LDS + Q E + Sbjct: 306 NDAFELRTGYKKEEVLGENPNILKSDLVSPEIYKNLNETLDS-----GEKWQGELINKRK 360 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 D + + I P+ +G++++Y+ I D+T + + + A Sbjct: 361 DGSLIYEKVSIVPIF-MDGELIQYLAIKLDVTAYIRQQKILQQAAT 405 >gi|324329249|gb|ADY24509.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 909 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 174/870 (20%), Positives = 351/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNLKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 + + +V L Y D F +NL L + L S+LI++ Y + Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGEAIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR++F + + S + VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G Sbjct: 575 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 N L E + +I+ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL + +K L++ Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 903 >gi|71277969|ref|YP_270582.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71143709|gb|AAZ24182.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 1086 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 150/563 (26%), Positives = 267/563 (47%), Gaps = 14/563 (2%) Query: 401 FSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 E LA S + + D + + P ++ I G +S + G N Sbjct: 515 RQQEEDLKLADIVYQNSSEAMMITDSKNEIIAINPALSEITGYSSSELIGKNPNVFSS-G 573 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + + ++ + + G Q E + + + + I + + G++ R I + + Sbjct: 574 KQNPEFYQLMWEEIK--LTGTWQGEIWNTKKNGKEYPEWLSISTIYDDYGNVFRRIALFS 631 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+KK IL A D+LT +PNR F+DRL + +S N + ++ ID+D +K Sbjct: 632 DITEKKKKDALILRQAKYDSLTNLPNRIMFIDRLEQEIKVSHR-KNQKFALIFIDLDNFK 690 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 KIND G GD +L+ +RI ++ D +ARL G+ F I+L + + + Sbjct: 691 KINDTRGHVYGDALLIEAGKRITHCIREVDTVARLGGDEFTILLSDIADIHNVESICQKV 750 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++++ P + + ++AS+G + + ++ E+LKNA+ AMY AK+ G N F Sbjct: 751 LQTLSEPFFISKMYTYISASLGVTIYPNDASSTLELLKNADQAMYLAKNLGRNRFCYFTA 810 Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S D + + DL A+ ++L + Y PI+ L I EAL++W HP G +S + Sbjct: 811 SMQEEALDHLELINDLRKAISLNQLEVFYQPIVELQTGVIRKAEALLRWKHPVRGMVSPA 870 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGM 814 EF+ +AEE +I I ++ ++ + I + +DQ I I +N + ++ + + + Sbjct: 871 EFIPLAEESGLIIEIGDWVFKQTVQHINTCKDQLG-LDIQISVNKSPVQFRESIDQLDWL 929 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A +++ I + +E ++M N + L + R GI L++DDFGT S LSYL Sbjct: 930 -AYLAENQLPGENIVIEITEGLLMNNNTSTMERLSKFRSAGIGLSMDDFGTGYSSLSYLK 988 Query: 875 YIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 D +K + S ++ +II MA+ + +IA+ I + ++ L GC Sbjct: 989 KFALDYLKIDQSFTRNIAPGSEDMILSEAIITMAQKLGLKVIAEGIETKEQMELLIGAGC 1048 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 DY Q + + P+ L+LL Sbjct: 1049 DYGQGYYFSRPIPAEDFLQLLAS 1071 Score = 65.0 bits (157), Expect = 6e-08, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 7/214 (3%) Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV--LIVI 380 I + + I L I I +T + + + L I Sbjct: 315 LIVSIGFSSALFLIVLYFIIGLHLSTIRSINSLTKVTGKFYGGDLDARVTLDTHDELNNI 374 Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 +GF + + S R + S +W I + G+ Sbjct: 375 ALGFNEMATSFQNLMIDKEEISS--RLRAIIDNSPIGIWFTGIDGRYHFVNKTFCNLAGI 432 Query: 441 ASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 M + + + + + + +E + ++ + + + I Sbjct: 433 KEEDMLNTPSSNLAELLGDEIAHHCLDSDKAALAQDSPHVSFET-IPRSNAKPYILEITK 491 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + N+ G+++ IGI+ DIT K+ E L A Sbjct: 492 VKLKNAQGEVVGLIGISKDITN-KRQQEEDLKLA 524 >gi|289208760|ref|YP_003460826.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] gi|288944391|gb|ADC72090.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] Length = 706 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 145/584 (24%), Positives = 271/584 (46%), Gaps = 18/584 (3%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 +L H ++ + + ER L V S DIV+ D + Sbjct: 117 LLATVRNALHKKDLEDANRHMRARLERSERLHRLIVNNSPDIVFILDRDGRFRFVNSRVH 176 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF----RVRAADNQ 491 +LG + + L + +D + + E R A + Sbjct: 177 ELLGYSRQDLLDT--RVLDLVETDDHEKAEYFFEQAGRSHAHIRSVELALKPREMARTRR 234 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + + S+ G+ L Y G A DIT++K+S I A+ D LT +PNR F DR+ Sbjct: 235 YFEVAVWPTAASDDTGETLVY-GTARDITDRKESEAFINFQAYHDLLTRLPNRALFRDRV 293 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 + + + VM ID++++K IND LG +GD +L ++ +R+ ++ D L+R Sbjct: 294 DVAIAQAQRQGHP-LAVMFIDLNRFKVINDSLGHTIGDRLLQAVAQRLLGCIRKGDTLSR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITS 670 G+ F ++L + D A + +S+ P +L E+ V ASIG A + T Sbjct: 353 FGGDEFTLLLPQISRQEAAVDVAEKILESLNEPFHLGGDHELYVGASIGIAIYPEGGDTL 412 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPII 728 ++++A++AMY K+ G N + F R+ +++DL A+E E +++Y P + Sbjct: 413 ETLIRHADIAMYREKNTGKNGIRLFAPEMHGNTPHRLQLEQDLRKALEREEFHILYQPQV 472 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 +++G+EAL++W+HP G + +EF+ +AE+ +I ++ L DI Sbjct: 473 DGETGQLLGVEALVRWNHPDRGMLGPAEFIPVAEDTRLIVDLDRATLRNALGDIRKAHQH 532 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 P + + +N++ + ++ +G+ L+ +T + +++ +ES++M + + L Sbjct: 533 V--PNLRLAVNLSPVLIERDDFVDGVLGLLVETGFPAELLEIEITESLLMSDTHDTVAKL 590 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAK 907 RL + G+ + +DDFGT S LSYL +P T+K + S A I+ +I+ MA+ Sbjct: 591 NRLCEAGVQVAVDDFGTGYSSLSYLQKLPVHTLKIDRSFTLTICTDGEACIVNAIVSMAR 650 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++ I+A+ + + L R+GC +Q P +L+ Sbjct: 651 GLQMNIVAEGVETAAQQEYLRRLGCPMMQGFLFGHPSPLADLLQ 694 >gi|113971088|ref|YP_734881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113885772|gb|ABI39824.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 1009 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 151/563 (26%), Positives = 261/563 (46%), Gaps = 12/563 (2%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T I G + + G L Y +N Sbjct: 451 IEESLKLSALVYDNSSEAMSVLDETGVIITVNAAFTEITGYSESEIRGQHIRML-YCDLN 509 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + +G Q E R R +N+ + + + I +++ +G R + + +DI Sbjct: 510 GHGFYTEMNNEIRE--KGEWQGEMRQRRKNNEEYVIWLTINTINDKDGQPYRRVALFSDI 567 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K+S I A D LTG+PNR+ L+ L + + + N +M +D+D +K++ Sbjct: 568 TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIRSADRNRN-HFALMFLDLDYFKEV 626 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ R+ ++ D++ARL G+ F ++L + + I A + + Sbjct: 627 NDTLGHAMGDLLLIETANRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILR 686 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 I+ P L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 687 RISEPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ + E++ EAL++W HP+ G +S +EF Sbjct: 747 QEYAKYRMRLIQDLRQAVVNKEFELHYQPIVTMGTGEVLKAEALLRWFHPERGQVSPAEF 806 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR WR + I I +N + D L Sbjct: 807 IPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVE-IQISVNKSPIQFRDEGTLLHNWLE 865 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 866 LLQELDVTGTGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 926 DIDYLKIDQSFTRHIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLNAGCDY 985 Query: 935 IQDSHVASPLGFNSILK--LLKE 955 Q + P+ LLKE Sbjct: 986 GQGYLFSKPVSAAEFTSQYLLKE 1008 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ V A + + + E+ L + S VWDWDI D + A ILG Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNARSADILGC 365 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ R W+ I DR +++ + + + E+R++ + W++ + Sbjct: 366 DIDMLNANSRQWMDSIVPEDRPKVLHSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGK 425 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + ++N + LR G DITE K E + +A D Sbjct: 426 VVSRDTNNNALRMCGTYTDITEAKLIEESLKLSALVYD 463 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 42/320 (13%), Positives = 97/320 (30%), Gaps = 16/320 (5%) Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYIT 286 V Y +I + L + + + + S+ ++ V + Sbjct: 20 VFLYDAIPKKHQRQYFLLWRLGIGLLIGGIGVTIMSTPWMYEPGIIFDTRSVLLCVTGLF 79 Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK--------GYERAV 338 F G+ + + Y + + + LA I+ +I+ + G E Sbjct: 80 FGGLPTVVAVIITGAYRYSIGGAAMWVGLAVIISSGLIGVIWRQYRKSYLANISGREIFS 139 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 I++ +WF L + + I+ P L + +L ++ Q Sbjct: 140 FAFVVHIVMLLWFFLLPSHVAIPVLQKIMLPVLTIYPLATWLL--SRLLSRRFELERDEQ 197 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 D + + + + P + +L + + W H Sbjct: 198 IRLQDDFLFRSQFNVGNIGIAITGVDQKWIKVNPRLCQMLKYSEDELLH--MTWKQLTHP 255 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D + + + + + + R A D+ + + + +N +L I D Sbjct: 256 DDIEADIVKFELMLAGKIDNYEMDKRFIAKDSAIVYTHMTVAC-KRANHQVLLVIAGYLD 314 Query: 519 ITEQKKSLEGILCNAFQDNL 538 +T Q +L A ++ L Sbjct: 315 VTAQ--TLADREVLASREQL 332 >gi|77463595|ref|YP_353099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides 2.4.1] gi|77388013|gb|ABA79198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides 2.4.1] Length = 833 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 141/589 (23%), Positives = 256/589 (43%), Gaps = 21/589 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F +I+ V + + R + ++W D V + G + Sbjct: 245 FGIIEDVHERRTTVEQLRESEARFRAFADDAPVMIWVTDTEGRNVFVSRSWLGATGQSLD 304 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G W+ +H +DRD I + R EFR+R D + W+I P Sbjct: 305 EALGT--GWIDAVHPDDRDATAAITREAMRRRIA-YTNEFRIRRKDGGWCWVIDVGHPRL 361 Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556 ++G + YIG DI+ ++++ + + A D LTG+PNR F D + Sbjct: 362 LADGTFIGYIGCCVDISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAV- 420 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 ++ V+++D+D +K +ND G VGD VL + R+ ++ D +ARL G+ Sbjct: 421 -ASLAPERSVAVLMLDLDGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDE 479 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +I + + D A + +I+ P +L V AS+G A ++ E+++ Sbjct: 480 FAVIQTPIRSEQEACDLARRLIAAISKPFDLEGAVPEVGASVGIAFARGHGDSAEEIMRY 539 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G F + R +K L A+ EL + Y P+I L D + Sbjct: 540 ADVALYAAKQAGRGTFRVFDEATDTHLQSRQKMKAALRAALGLGELSVFYQPLIGLRDGQ 599 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + EAL++W G I+ +F+ +AEE +I + ++L W D + Sbjct: 600 VTACEALMRWHRKGAGWITPDQFIPLAEEAGLIGDMGDWVLHEACAQAARWPDS-----V 654 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ L + + + + + P R++L +ESV++ +R+ +L LR + Sbjct: 655 SVAVNLSPLQFHGGALVDQVASALRASGLPPERLQLEITESVLLDPTDRNIGVLQDLRAL 714 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912 G + +DDFGT S L YL PFD +K + S + + R AIL+++ + ++++ Sbjct: 715 GAKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPDAREALAILKAVAGLGRSLDMR 774 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + + + + G D Q + PL I + P + Sbjct: 775 TTVEGVETQAQLDCAIAEGVDEAQGYFFSRPLPAPGIASFISGCLPKRR 823 Score = 71.9 bits (175), Expect = 5e-10, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 10/168 (5%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 + G L+V T ++ + + + + Sbjct: 104 RRFLVSRRPAGEHLVVTFFEITDLRET------EGVLRQREAHLRNLLELHPVAPFSFTA 157 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + I GL +G+ + W +H DR + R V + E Sbjct: 158 DGVLSDLSDRLVAITGLPAGT--RHVDAWWAAMHPCDRRDLRRAWIRSVRGGQ-SFDAEH 214 Query: 484 RVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 R++ D + W RI + + + R+ GI D+ E++ ++E + Sbjct: 215 RLQMPDGAYRWFRARIVARPRDQDQRVDRWFGIIEDVHERRTTVEQLR 262 >gi|330806854|ref|YP_004351316.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374962|gb|AEA66312.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 635 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 140/637 (21%), Positives = 274/637 (43%), Gaps = 16/637 (2%) Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389 M+ ++L W+ + + + ++ L ++ Sbjct: 8 AMRVALLYLVLSVIWLQLTGYLSTSFFDQFADRQRWLLINGYAWALFSAGLVFLARARIS 67 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448 + + + + V D V I G + G Sbjct: 68 RFFAKGEHGADRERLRQAAAVFDCTREGVLVTDRNGLIVHVNRAFIAITGYVRDEVLGQR 127 Query: 449 IRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + H + L+S +G E R + + IR + + +G Sbjct: 128 PSLFKSGRHGPEFYRDMFASLNS-----QGEWSGEIWNRRKSGEIYPQWQTIRVIRDDSG 182 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ Y+ + +DI+ K S + A D LTG+PNR F DR L + Sbjct: 183 EVSHYVAVFSDISAIKDSEHELAYLAHHDPLTGLPNRLLFSDRTEQALASAQLHKRG-CA 241 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++++D+D +K IND LG VGD++L + R L LARL G+ F +++ + + Sbjct: 242 LLLLDLDHFKNINDSLGHNVGDELLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQP 301 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A A + ++ P+ + + + ASIG + + +++ ++L+NA+ A++ AK+ Sbjct: 302 GQAAALARRILDALKEPLRFDDHALFINASIGISLFPGDALSAGQLLRNADSALFKAKNA 361 Query: 688 GGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + + + ++ +L A++ EL + Y P+ L ++G+EAL++W+ Sbjct: 362 GRDGYALYTEELTAHAQQRVEIAFELRRALQQQELRVHYQPVHELATSRLIGVEALVRWE 421 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G +S +EF+ IAE +I ++ +++++ R + W+ F+ +N++S+ Sbjct: 422 HPTRGLVSPAEFIPIAERTGLIAQVDAWVMDQACRQMCQWQQAGVALS-FVAVNVSSRLF 480 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 EL + + ++ T P ++L +ES VM +PE + + RLR++G+ L +DDFGT Sbjct: 481 ARRELYDQVAQVLHDTGLDPGCLELEVTESAVMEDPEVALEQMHRLRELGVRLAIDDFGT 540 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L L +P +K + + G E AI+R II +A ++ + A+ I Sbjct: 541 GYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVIIALAHSMGMQVHAEGIEQCEQ 600 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 L C+ Q P+ ++L +R P++ Sbjct: 601 AAFLLGQACELGQGYWFGRPV-AAALLDW--DRVPVI 634 >gi|126462427|ref|YP_001043541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhodobacter sphaeroides ATCC 17029] gi|126104091|gb|ABN76769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides ATCC 17029] Length = 833 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 142/589 (24%), Positives = 256/589 (43%), Gaps = 21/589 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F +I+ V + + R + ++W D V + G + Sbjct: 245 FGIIEDVHERRTTVEQLRESEARFRAFADDAPVMIWMTDTEGRNVFVSRSWLGATGQSLD 304 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G W+ +H +DRD + RR EFR+R D + W+I P Sbjct: 305 EAMGT--GWIDVVHPDDRD-ATASITRDAMRRRIAYTNEFRIRRKDGGWCWVIDVGHPRL 361 Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556 ++G + YIG DI+ ++++ E + A D LTG+PNR F D + Sbjct: 362 LADGTFIGYIGCCVDISARRQAEEDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAV- 420 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 ++ V+++D+D +K +ND G VGD VL + R+ ++ D +ARL G+ Sbjct: 421 -ASLTPERSVAVLMLDLDGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDE 479 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +I + + D A + +I+ P +L V AS+G A ++ E+++ Sbjct: 480 FAVIQTPIRSEQEACDLARRLIAAISKPFDLEGAVPEVGASVGIAFARGRGDSAEEIMRY 539 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G F + R +K L A+ EL + Y P+I L D + Sbjct: 540 ADVALYAAKQAGRGTFRVFDEATDTHLQSRQKMKAALRAALGLGELSVFYQPLIGLRDGQ 599 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + EAL++W G I+ +F+ +AEE +I + ++L W D + Sbjct: 600 VTACEALMRWHRKGAGWITPDQFIPLAEEAGLIGDMGDWVLHEACAQAARWPDS-----V 654 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ L + + + + + P R++L +ESV++ +R+ +L LR + Sbjct: 655 SVAVNLSPLQFHGGALVDQVASALRASGLPPERLQLEITESVLLDPTDRNIGVLQDLRAL 714 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912 G + +DDFGT S L YL PFD +K + S + + R AIL+++ + ++++ Sbjct: 715 GAKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPDAREALAILKAVAGLGRSLDMR 774 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + + + + G D Q + PL I + P + Sbjct: 775 TTVEGVETQAQLDCAIAEGVDEAQGYFFSRPLPAPGIASFISGCLPKRR 823 Score = 73.8 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 10/168 (5%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 + G L+V T ++ + + + + Sbjct: 104 RRFLVSRRPAGEHLVVTFFEITDLRET------EGVLRQREAHLRNLLELHPVAPFSFTA 157 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + I GL +G+ + W +H DR + R V + E Sbjct: 158 DGVLSDLSDRLVAITGLPAGT--RHVDAWWAAMHPGDRRDLRRAWIRSVRGGQ-SFDAEH 214 Query: 484 RVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 R++ D + W R+ + + + R+ GI D+ E++ ++E + Sbjct: 215 RLQMPDGAYRWFRARVVARPRDQDQRVDRWFGIIEDVHERRTTVEQLR 262 >gi|46201536|ref|ZP_00054870.2| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 822 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 138/592 (23%), Positives = 265/592 (44%), Gaps = 13/592 (2%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 L + V+ + + + +G+ ++ D R + Sbjct: 225 RLTITAMREGSDNELRFTVAVVEDVTEKKRLEDHMRLAATVFESTGEGLFVTDEKRRIIH 284 Query: 430 TTPDIATILGLASGSMHGPIRNWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P + G + + G +L H D L G+ Q E R Sbjct: 285 VNPAFTELTGYPADEVIGRTPKFLASGRHKPEFYDQVFKTLAE-----TGKWQGEIWNRR 339 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + + I + + GD+ Y+ + +DIT +K+ E + A D LT +PNR F Sbjct: 340 KTGEMFAEWLNISVVRDERGDLTNYVAVFSDITSRKQDEERLNYQANHDPLTRLPNRTLF 399 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL+ L + + + ++ ID+D +K++ND LG GD +L + R+ ++ D Sbjct: 400 QERLSRALTRAHRNQTI-VALLFIDLDFFKQVNDTLGHLAGDILLQQVAERLSSCVRQGD 458 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +ARL+G+ F +IL A A + +A P +L E +++SIG A + S Sbjct: 459 TVARLAGDEFTVILEEITEPRDCAVVAHKILSLMAEPFDLQGHEARISSSIGVALYPSDS 518 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + ++K A+ AMY AKH+G N +++ +R+ ++ L AVE E L Y Sbjct: 519 GDAQTLIKLADAAMYRAKHQGRNACRFHSESINAQAFERLALESALRHAVERQEFLLHYQ 578 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI ++V +EAL++W H +G I ++F+ +AEE +I + F+LE R SW Sbjct: 579 PIFDARSGQVVAVEALLRWRHQDFGLIMPNQFLPLAEETGLIGPVGKFVLEEACRQTKSW 638 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 D + + +N++++ L EL E + + + + P ++L ES ++ + Sbjct: 639 LDA-GYSGLKVGVNLSNRQLRAPELIEDIASALEASGLPPGALELDVPESAIIDKGQDVD 697 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903 + + + +G+ + +D FG+ S S+L +P +T+K + + + + I+ +I+ Sbjct: 698 AIFTQFKSLGVRMAIDAFGSGYSSFSFLRKLPSNTLKIDQGFVRDAAAGAEESEIVTAIV 757 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +A+ + +++A I E + L + D +Q A P+ + + L+ Sbjct: 758 AVARGLHLSVVAPSIETEEQLAHLGKYDFDMVQGFLFAHPMPAEELTEFLRS 809 Score = 97.7 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 3/151 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 I++ + + R +G V D + P ++G + Sbjct: 116 RAIRYAIGRSTADAALRQSESRFRALFDNAGTGVVLSDARGAYIHCNPAFCAMVGYSDAE 175 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS- 503 + + H +D D + + + R + R D W+ + I M Sbjct: 176 L--QTMTYRDLTHPDDIDTHSQMREDMMAGRIDSYELTKRYIRRDGAAVWVRLTITAMRE 233 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534 S+ ++ + + D+TE+K+ + + A Sbjct: 234 GSDNELRFTVAVVEDVTEKKRLEDHMRLAAT 264 >gi|114048322|ref|YP_738872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] gi|113889764|gb|ABI43815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] Length = 1009 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 151/563 (26%), Positives = 261/563 (46%), Gaps = 12/563 (2%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T I G + + G L Y +N Sbjct: 451 IEESLKLSALVYDNSSEAMSVLDETGVIITVNAAFTEITGYSESEIRGQHIRML-YCDLN 509 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + +G Q E R R +N+ + + + I +++ +G R + + +DI Sbjct: 510 GHGFYTEMNNEIRE--KGEWQGEMRQRRKNNEEYVIWLTINTINDKDGQPYRRVALFSDI 567 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K+S I A D LTG+PNR+ L+ L + + + N +M +D+D +K++ Sbjct: 568 TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIRSADRNRN-HFALMFLDLDYFKEV 626 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ R+ ++ D++ARL G+ F ++L + + I A + + Sbjct: 627 NDTLGHAMGDLLLIETANRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILR 686 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 I+ P L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 687 RISEPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ + E++ EAL++W HP+ G +S +EF Sbjct: 747 QEYAKYRMRLIQDLRQAVVNKEFELHYQPIVTMGTGEVLKAEALLRWFHPERGQVSPAEF 806 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR WR + I I +N + D L Sbjct: 807 IPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVE-IQISVNKSPIQFRDEGTLLHNWLE 865 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 866 LLQELDVTGTGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 926 DIDYLKIDQSFTRHIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLNAGCDY 985 Query: 935 IQDSHVASPLGFNSILK--LLKE 955 Q + P+ LLKE Sbjct: 986 GQGYLFSKPVSAAEFASQYLLKE 1008 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ V A + + + E+ L + S VWDWDI D + A ILG Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNARSADILGC 365 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ R W+ I DR +++ + + + E+R++ + W++ + Sbjct: 366 DIDMLNANSRQWMDSIVPEDRPKVLHSIEAHIRGETPQHKMEYRLKTLNRNIRWILDTGK 425 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + ++N + LR G DITE K E + +A D Sbjct: 426 VVSRDTNNNALRMCGTYTDITEAKLIEESLKLSALVYD 463 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 42/320 (13%), Positives = 97/320 (30%), Gaps = 16/320 (5%) Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYIT 286 V Y +I + L + + + + S+ ++ V + Sbjct: 20 VFLYDAIPKKHQRQYFLLWRLGIGLLIGGIGVTIMSTPWMYEPGIIFDTRSVLLCVTGLF 79 Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK--------GYERAV 338 F G+ + + Y + + + LA I+ +I+ + G E Sbjct: 80 FGGLPTVVAVIITGAYRYSIGGAAMWVGLAVIISSGLIGVIWRQYRKSYLANISGREIFS 139 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 I++ +WF L + + I+ P L + +L ++ Q Sbjct: 140 FAFVVHIVMLLWFFLLPSHVAIPVLQKIMLPVLTIYPLATWLL--SRLLSRRFELERDEQ 197 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 D + + + + P + +L + + W H Sbjct: 198 IRLQDDFLFRSQFNVGNIGIAITGVDQKWIKVNPRLCQMLKYSEDELLH--MTWKQLTHP 255 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D + + + + + + R A D+ + + + +N +L I D Sbjct: 256 DDIEADIVKFELMLAGKIDNYEMDKRFIAKDSAIVYTHMTVAC-KRANHQVLLVIAGYLD 314 Query: 519 ITEQKKSLEGILCNAFQDNL 538 +T Q +L A ++ L Sbjct: 315 VTAQ--TLADREVLASREQL 332 >gi|114775460|ref|ZP_01451028.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1] gi|114553571|gb|EAU55952.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1] Length = 1123 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 153/601 (25%), Positives = 280/601 (46%), Gaps = 13/601 (2%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 L + L +I +L + Q + + V + + Sbjct: 527 LGLLHLQLQPEGPTPQEFLRFCQQAAEIISEMLLREHIRQALEESENKHRQLVETTPMGI 586 Query: 419 WDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 + P T+LG + +G + G L +I +DR+ L + Sbjct: 587 VIYS-NNKICYINPAAVTMLGASGAGEILGQ--AVLSFIVPDDREAASADLHTLQQGGYV 643 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + E R + D W +R P+ + ++ + DI+ +K++ E + ++ D Sbjct: 644 QPTEE-RFQRLDGSTFWGELRGVPVEYESQPAVQLL--IQDISSRKEAQEQLRLLSYSDE 700 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ + DR+ ++ +++ +D+D++K IND G A GD VL ++ Sbjct: 701 LTGLPNRRLYSDRVEQACSMARRRKR-PISLLFLDLDRFKLINDTRGHACGDMVLKTVAN 759 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ + L+ D AR+ G+ F ++L E K A + ++ PI + +E+ + AS Sbjct: 760 RLLQTLRVSDTAARMGGDEFAVLLP-ETEPDKALRVAGKLIAALNQPILIGNQELIIGAS 818 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVE 716 IG AS+ + +LK+A+ AMY+AK H S + + R+ +++ L LA Sbjct: 819 IGLASFPADGEDGETLLKHADSAMYYAKQNRLNIHCFSSVMEAVAQRRMQLEDSLRLAAG 878 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 + +L L Y L + I G+E+L++W HP+ GNIS EF+ +AEE +I++I + + Sbjct: 879 SGQLSLHYQSQHSLAEGTITGMESLMRWHHPELGNISPGEFIPLAEETGLIRSITAWAIT 938 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 +R + W + P I INI++ +L+ L + LI + P I++ +E+ Sbjct: 939 EASRQALVWEEAGIRPE-RISINISAAELMQQNLASEILTLIRGSGAKPEWIEIEITETA 997 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 M PE ++ L + G+S+ +DDFGT S L+YL +P D +K + + + + Sbjct: 998 AMNQPETGIGIMRELVEGGVSIAIDDFGTGYSSLAYLKQLPADHLKIDIAFIRNLPDDAE 1057 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 I+R+II MA + T++A+ + + + L + GCD IQ + PL + +L Sbjct: 1058 DAVIVRTIIAMAHALGMTVVAEGVETQAQLDFLRQEGCDGIQGYLLGKPLPADETSTMLA 1117 Query: 955 E 955 Sbjct: 1118 N 1118 Score = 46.1 bits (108), Expect = 0.032, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 9/135 (6%) Query: 403 DGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--- 457 ER LA + + + + D + P + G + L H Sbjct: 303 SAERHKLAAVIDHALESILVTDEEGRILLANPASNELFGYDEQTWQELSVLKLLMDHNAS 362 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 N+ + + + + E + R D + I + +N R + Sbjct: 363 PTSLHNWLS--EQAGNHSSTGVVREMQGRRRDGSIFPCEVAIHAFTAANKR--RCSIVVR 418 Query: 518 DITEQKKSLEGILCN 532 D+TE + Sbjct: 419 DMTELTRRQWVQTTL 433 >gi|121998228|ref|YP_001003015.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Halorhodospira halophila SL1] gi|121589633|gb|ABM62213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halorhodospira halophila SL1] Length = 698 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 134/587 (22%), Positives = 261/587 (44%), Gaps = 13/587 (2%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + ++ L L + ++ + + + + + D + D Sbjct: 105 GGRLWFEIVLTPLHLDDETLCCATLRDISRRKEMERRLQLSAK----VFTATRDGILITD 160 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + I G A + G L H +D D +R + +S +++G E Sbjct: 161 ADSRILQVNDAFTRITGYAEEELLGRTPRVLQSGH-HDADFYRVMWESI--HQQGSWSGE 217 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 R + I ++ + G+++ +I + +D+TE K+S E + A+ D LTG+ Sbjct: 218 LWDRTKYGTLQPKWVTISKVTGAYGEVINFIAVFSDLTELKRSQERLQFQAYHDALTGLA 277 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F DR+ L+ S + + V+ ID+D +K +ND LG GD +L + R+ Sbjct: 278 NRLLFKDRMARALERSRQSEE-QLAVLFIDLDHFKDVNDSLGHTAGDRILRQVAHRLQAR 336 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L D LARL G+ F I L + A + + + P +R SIG + Sbjct: 337 LGADDTLARLGGDEFSICLAEIRDHRDALACAETVHQELERPFQYSQRWFQCRCSIGISM 396 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSEL 720 + + T E+++NA+ A+++AK G N + R+ + +++ ++ EL Sbjct: 397 YPDNGETVEELIRNADSALHNAKAEGRNTTCFYAEELTERAQRRLDLAQEMRQGLQRGEL 456 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 + + L +VG+EAL++W HP+ G ++ F+ +AEE+ + A+ +L + + Sbjct: 457 IPYFQHQVDLTTGRVVGIEALVRWHHPERGLLTPGAFIPVAEEVGTMAALGEDILLQACQ 516 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 +W DQ + +N+++ + ++ + ++ + +T ++L +ES +M Sbjct: 517 QGRTWLDQRREFG-RVAVNLSAAQFHNGDIEKTVRRTLEQTGLPAQCLELEITESTIMDL 575 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 R+ L LR+ G+SL++DDFGT S L YL +P + VK + + T + +I Sbjct: 576 SPRTLERLAALRRAGVSLSIDDFGTGYSSLLYLKRLPINRVKIDRGFIWDMGTTPESRSI 635 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + +I+ +A + ++A+ + +L GC Q A P Sbjct: 636 VDTILQLAHVLGLEVVAEGVETIQQRDQLIDAGCRVAQGFLWARPEP 682 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 10/126 (7%) Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHG-PIRNWLPYIHIND---RDNFRTI 467 S D + V P A +LG + G P I + D +++ Sbjct: 26 QSEDGMLVL-RDGHFVACNPAAARMLGWDDPQQLIGLRPEAISPQIQPDGASAADRVQSL 84 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L + V R E+ + + W I + P+ + + DI+ +K+ Sbjct: 85 LRAAVSEGAQRF--EWIHTSPEGGRLWFEIVLTPLHLDDETL--CCATLRDISRRKEMER 140 Query: 528 GILCNA 533 + +A Sbjct: 141 RLQLSA 146 >gi|73539725|ref|YP_294245.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia eutropha JMP134] gi|72117138|gb|AAZ59401.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia eutropha JMP134] Length = 835 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 150/567 (26%), Positives = 251/567 (44%), Gaps = 12/567 (2%) Query: 392 ATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 A + + LA + D V D+ P + G G Sbjct: 265 ALRERDEALLESAYHLKLADRVFQATLDGVMVTDLNGVIERVNPAFTQLTGYTQAEAIGR 324 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L + F L + G + E R + + + + I + +G Sbjct: 325 TPKMLSSGKQS--AAFYQSLWRQLRENGG-WKGEIWNRRKNGELYLEYLSISGIYGQHGR 381 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 Y I +DIT+++ E + A D LT +PNR F +RL A R V Sbjct: 382 CTHYAAIFSDITQRRMDEERLNHLAMHDALTSLPNRTLFSERLKQA-IARAKRAARRVAV 440 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 M ID+D++K IND +G VGD+ L + RR+ E ++ D +ARL G+ F +I+ + Sbjct: 441 MFIDLDRFKLINDTMGHGVGDEALKVIARRLKEAIRESDTVARLGGDEFTVIIEDVEDIR 500 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 +A A A+ + PI+ R + VT SIG + + I ++L A+ AMY AK G Sbjct: 501 HVAQIAQALLNVVGQPIDAHGRTVFVTPSIGISIYPDDGIDRKQLLMQADRAMYEAKEEG 560 Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N+ F +R+ ++ +L A+ E L Y P+ L +IV +EAL++W H Sbjct: 561 KNNFRFFATQMTSSSMERITLESELRNALAAGEFRLHYQPVFDLRSGDIVSVEALLRWQH 620 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P G ++ F+ AEE +I I ++L R W D+ I +N++++ Sbjct: 621 PTRGLLAPGAFITTAEESALIVPIGAWVLREACRQARIWMDEGFEFG-RIAVNLSARQCR 679 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 + + ++S P+R++L ES+ M + LL L + G+SL +DDFGT Sbjct: 680 HAQFLHDLTTILSDAGVPPTRLQLELVESMAMTGNGVTESLLDELAQRGVSLAIDDFGTG 739 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924 S YL +P D +K + S + +R ILR+++ MA ++ T++A+ + + Sbjct: 740 YSSFIYLQTLPVDMLKVDRSFLAAIDGRRRDGTILRAMVAMAHSLGLTVVAEGVEQAEQV 799 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951 + L +GCD Q +A P+ + Sbjct: 800 QFLREIGCDRGQGFFLARPVPAEQFRR 826 >gi|320354834|ref|YP_004196173.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfobulbus propionicus DSM 2032] gi|320123336|gb|ADW18882.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfobulbus propionicus DSM 2032] Length = 1093 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 156/580 (26%), Positives = 260/580 (44%), Gaps = 14/580 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILG 439 G +H LA E A S + + D + P I G Sbjct: 500 GDQERRHNLAVIRDITKRKQAEEELVFAAKVFDNSIEGIVVTDADATILQVNPAFTVITG 559 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 G L F + + + R G+ E R + + + + I Sbjct: 560 YGPAEAIGQNPRMLKS--DKHLPAFYQAMWNQLA-REGQWAGELWNRRKNGEVYPEWLTI 616 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + N G + YIG+ +DITE K+ E + A D LT +PNR DRL L Sbjct: 617 SAIRNPLGRVTHYIGLFHDITELKRQQEALEHQAQHDALTNLPNRVLLNDRLAMALARMK 676 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 +++ ++ +D+D +K IND G GD++LV L+RR+ E L+ D LAR G+ F I Sbjct: 677 R-KSVKAALLFLDLDHFKNINDGFGHVAGDNLLVELSRRLKEQLRIGDTLARQGGDEFLI 735 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L ++ + A+ + S+ P + + E + ASIG + ++KNA++ Sbjct: 736 LLPEVDSVDDVGLVALRLLNSLRQPFHHQDIEYFIGASIGVTIAPDDGTDADTLIKNADM 795 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G N+ + F ++ L +E EL L + P++ +I G Sbjct: 796 AMYRAKQLGRNNYQFFTPELDAQAHRRISLESKLRRGIEQGELELHFQPVVSSGSGKIHG 855 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W H + I+ EF+ +AEE +I + ++L A +W+D + Sbjct: 856 AEALVRWRH-EGELIAPGEFIPLAEESGLILPLGEWVLRTAAGRARAWQDAGYRLG--LS 912 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN++S+ D EL + A+++ T P R+ +ES++M +R++ +LG LR IG Sbjct: 913 INLSSRQFTDQELVKLYLAVLADTGLEPGRLYFEITESLLMKEIDRAQHILGALRDIGGK 972 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 LDDFGT S L+YL +P D +K + S + AI+ +I+ +A+ + I+A Sbjct: 973 FYLDDFGTGYSSLAYLKRLPLDGLKIDRSFIRDIESDADSRAIVEAIVSLAQTLHLAIVA 1032 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + L MG IQ + P+ LL++ Sbjct: 1033 EGVETTEQLGFLQGMGPMLIQGYLASPPVPAERFDALLRQ 1072 Score = 82.3 bits (202), Expect = 4e-13, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 58/168 (34%), Gaps = 3/168 (1%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + ++ + + +L+ F + + + + + V D Sbjct: 363 VLAGVLLAGMGVGVLLLFFNARLAHEVQKRTAALAASERSFRAFFELASVGVAQVDARTG 422 Query: 427 R-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 R + I+G + M R++ + D R V R E R Sbjct: 423 RFLRINRKYCDIVGYSEQEML--ERSFRDITYPEDILLDRQQRRDLVAGRIPEFTVEKRY 480 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + W++I + P+ + + + + + DIT++K++ E ++ A Sbjct: 481 IHKNGSIVWVLISVSPLWSGDQERRHNLAVIRDITKRKQAEEELVFAA 528 >gi|288962778|ref|YP_003453072.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510] gi|288915044|dbj|BAI76528.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510] Length = 819 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 145/589 (24%), Positives = 272/589 (46%), Gaps = 13/589 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 L L LI+ + T + + G + + E + + + + + Sbjct: 229 TGLSIALALILRMGLVTHSRALELAGVMTASLRLREEERQQLLTQAPLGIALVGADGVLM 288 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 P A G + G D+ L++ + G+L+ + + Sbjct: 289 ECNPAFAAAAGRPPRDLLGTDARLRFG----DQAAV-FALEAALQGESGKLESDQPLVLG 343 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 + + +P++ S+G + + A DI E++++ + I A D LT +PNR Sbjct: 344 -GRRSHFSLHFQPVT-SDGVLKFVLAFAEDIGEKRRAEQHIQYLAHFDALTSLPNRVLLY 401 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 DR+ L + D + V+ ID+D++K IND LG + GD+VL S+ RR+ L+ D Sbjct: 402 DRIAQALREARRD-GTKVAVLFIDLDRFKIINDSLGHSFGDEVLRSVARRLQAGLRDSDT 460 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 + RL G+ F I+L A A + +A P + + VT SIG + + Sbjct: 461 VGRLGGDEFLIVLRRVTEPADAARVAEKVVAHLASPFPVGGQSFVVTPSIGISLYPDDAD 520 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHP 726 + E+++ A++AMYHAK +G N +R+ ++ L A+ +L+LVY P Sbjct: 521 DAEELIRCADIAMYHAKEQGRNGFRFVTREMGAKSRERMDLEGSLRRAIREGQLFLVYQP 580 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + + IVGLEALI+W HP+ G I F+ +AEE ++ A+ ++L I WR Sbjct: 581 QVDTLTGRIVGLEALIRWRHPEEGLILPGRFLPVAEETGLVVAMGDWVLFEACAQIRRWR 640 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 + + + +NI+ D +L + + S +++ +ES ++G+ E + Sbjct: 641 QRF-DLSVPVAVNISGAQFRDGQLPAKIAHALDVHGLSGPELEIEVTESTLIGDVEAAAA 699 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIP 904 L L++ G+ + LDDFGT S LSYL +P D +K + S + + ++ R+I+ Sbjct: 700 TLMALKERGVLIALDDFGTGYSSLSYLHRLPIDKLKIDRSFIRDLATGDSDASVPRAIVG 759 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + +++ ++IA+ + + ++ L + C+ Q + P+ + + +LL Sbjct: 760 LGRSLGLSVIAEGVETQEQLQLLRDLACESYQGFLFSRPIPADEVERLL 808 >gi|295400746|ref|ZP_06810723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] gi|294977327|gb|EFG52928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] Length = 842 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 152/810 (18%), Positives = 332/810 (40%), Gaps = 37/810 (4%) Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLG---Y 231 L+ ++ T+ + + V+ +AI + + + S + + +V Sbjct: 36 LYFVAEANQYLSLHTILEFLSVTVSLSIAIQGWMIFPQHLSRYRLWYSVVFLIVGIIDLL 95 Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIA 291 ++ + + L+ + S L+ + ++F ++ + ++ F Sbjct: 96 HTLSYKGMPGLIVVESSPQKATWFWVAARLTQACMLFFIIFFPDRQVQSRQKKTMFIFSV 155 Query: 292 CIAILFCMSFYYPMVTASI-------------ARITLASIVLYYTYFIIYHGMKGYERA- 337 ++ I + + T +++ K + Sbjct: 156 LYVLVISYIIIRYEQKLPILVVDGKGTTNLKNFLEYIIILFYASTAYMLLCSYKKQPKKA 215 Query: 338 -VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATG 394 + LI A++ + + + + + G + + + T+ + A Sbjct: 216 HLDLILAFVFLILSEFLFTLYKNVYDLQNFLGHLYKGISYIYFMKGIYIATIKEPYDAQK 275 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + G+ V D + + +LG + G Sbjct: 276 KAEEELKKREKYLKTITSSLGEGVIVLDKDKKITFINQEAERLLGYQKNELLGK--ALFQ 333 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRV-----RAADNQFHWMIIRIRPMSNSNGDI 509 IH ++ L + L+ +RV D + PM + NG++ Sbjct: 334 KIHCGS-EHQCDSLRECPLCQTAELKKAYRVEEDFFVRKDGTLLPIAYVSTPMIDDNGEV 392 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + + + +ITE+KK E I A+ D LT +PNR+ +++L L + N R ++ Sbjct: 393 IGSVIVFRNITERKKYDEKIKYQAYHDALTDLPNRRYLIEKLKNELKKAEEH-NSRIAIL 451 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +K IND G +GD +L ++ +R+ ++ +ARL G+ F ++L + Sbjct: 452 YLDLDNFKNINDSFGHVMGDLLLKNVAQRL-TMIHPDCFIARLGGDEFAVLLSGND--FN 508 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 I + A +S+ PI L +E+ +T S+G + + ++++A++AMY AK +G Sbjct: 509 IEEIACKTIQSLNQPIKLENKEVFITTSVGISVYPKDGDDEMTLIRHADMAMYDAKKKGK 568 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + + I++ L A+E E+ L Y PII + + I+GLEAL +W+HP Sbjct: 569 NQFSFYTAELEQQKIRKSKIEQLLRTAIERKEVSLCYQPIIDTVSKRIIGLEALARWNHP 628 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G+I ++EF+ +AEE I ++ +L+ + + + +++ +N++ + L Sbjct: 629 EIGDIPANEFIAVAEENGQIVSLGKHILKTALQHLKQLHEIGFDY-LYVSVNLSLRQLRH 687 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 +E + L+ K S +++ +E + + + + + L+ IG+ + +DDFG Sbjct: 688 HEFTALISQLLQKNKLQASHLEIEITEHIALSDEKCVIHNIQELKDIGVRIAIDDFGVGY 747 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S + YL DT+K + S + + + ++I A N+ ++A+ + + Sbjct: 748 SSIGYLRTFSVDTLKIDKSFIFDVATNPNTAQLTSALITFAHNLNLQVVAEGVESAEQLC 807 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C+ IQ + P+ F ++ LL Sbjct: 808 FLEQHHCNKIQGYLFSPPVSFEQLVSLLHS 837 >gi|126176100|ref|YP_001052249.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS155] gi|125999305|gb|ABN63380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS155] Length = 1497 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 139/563 (24%), Positives = 264/563 (46%), Gaps = 12/563 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + A + + V D+ I+G+ S + G + Sbjct: 932 QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSADLVGQSFTQFVQM 991 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D + + + E + A Q + + + M ++NG + Y+ + Sbjct: 992 N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1046 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K++ + A D LTG+PNR F RL + + + ++ +D+D++ Sbjct: 1047 SDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1105 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV + R+ + +L R G+ F I+L + N+ I A Sbjct: 1106 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDDINHIAER 1165 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + + I P L RE ++ SIG + W + +KNA+LAMYHAK G + + + Sbjct: 1166 LLEQIVAPFKLYGREFYISTSIGISIWPDYAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1225 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753 ++ + ++ DL A+E E L Y P I + +++++G+EALI+W HP G I Sbjct: 1226 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1285 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AE +I I+ ++L + W + + +NI++ + E Sbjct: 1286 PDIFIKVAEACGLIVDIDRWVLRQACVQGAHWAKRYGAT-FKLSVNISAVHFRQPDFIED 1344 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q ++ +T + + L +E V+M ++ L RL+ +GI + +DDFGT S L+YL Sbjct: 1345 IQRILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1404 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + +T+K + S + AI+ SII +A+N++ ++A+ I ++++ G Sbjct: 1405 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1464 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 C IQ + A P+ + L+ Sbjct: 1465 CYIIQGYYFAKPMCVADFERYLE 1487 Score = 104 bits (260), Expect = 7e-20, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ +I + + + + + +Q + +R ++ GS +W+W Sbjct: 782 LLLLFSIIALSLAWYRQRQINTFKQMNQALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 841 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +LG + + + +H DR+ DS + R + E+R + D Sbjct: 842 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 898 Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP++ + +I R GI +DIT Q++ + + A Sbjct: 899 NWGWLRVRGRPVTRNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 943 >gi|53804274|ref|YP_114093.1| sensory box protein [Methylococcus capsulatus str. Bath] gi|53758035|gb|AAU92326.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus str. Bath] Length = 819 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 151/820 (18%), Positives = 308/820 (37%), Gaps = 57/820 (6%) Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232 Y W P V S + ++ L Y R ++ L + Sbjct: 19 CYAWVPELLWLHVISDLVIAAAYCAISIAL------LYFAKRRRDVVFRSVFLLFGLFIL 72 Query: 233 ---SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL------------FMYLHWNR 277 F + + + + I+ L N+ Sbjct: 73 ACAGTHFMGAWTVWYPAYWTDGAIKVITAAVSFGTAILVWPLIPRALEIPSPRQLLELNQ 132 Query: 278 WHA-----------KVGYITFSGIACIAILFC-MSFYYPMVTASIARITLASIVLYYTYF 325 A ++ + + C+ + + + + Sbjct: 133 HLASEVSERKQAEQRLRMLIDAEPECVKTVGADGTLLDMNRAGLQMIEAESIEEVRGKPI 192 Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 + ER ++ L I L V G Sbjct: 193 TSLVAPQDVERFKAFNQR--VLAGESGILEFQIIGLKGGRRW---LESHAVPFASRPGAP 247 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + + R + + + + D + I G S + Sbjct: 248 DAVLAVTRDVTERKLAEEAVRLAATAFETSEAIMITDAAGIVQRVNSGYSAITGYTSDEI 307 Query: 446 HGPIRNWLPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G +L H + + + + E R + + + I+ + Sbjct: 308 VGTPSEFL---HPGGEEGKTSPRAILEALKG-TDCWKGELTARRKNGDVCPVWLSIKAVR 363 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 N + Y+ DI+E+K++ + I A+ D LTG+PNR+ FL+RL + S + + Sbjct: 364 NDEQILTHYVVTFVDISERKRAQQEIEQLAYFDPLTGLPNRRLFLERLNQAIGESCVNGS 423 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R +++ +D+D++K +ND G VGD +L + R+ E + ++ARL G+ F I+L Sbjct: 424 -RCSLLFVDLDRFKHLNDARGHTVGDQLLRKVAERLSEGVGRGGMVARLGGDEFVILLNG 482 Query: 624 ENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 + + D A +R + P L + VTASIG A + ++ ++LK A+ Sbjct: 483 LDEEFESACRRTMDVAENLRVILQRPFVLSSGQHYVTASIGTAIYPFDTDSADDLLKAAD 542 Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK G N V ++ + R+ ++ D+ A+E E L + + IV Sbjct: 543 MAMYEAKASGRNTVRAYASTMQAAAETRLTLERDMHAALERREFRLYLQSQVDG-NGRIV 601 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W+HP G + +F+ +AEE +I I ++ E++ + + + + + Sbjct: 602 GAEALLRWEHPTEGILLPDKFIALAEETGLILPIGEWVFEQVCHENVRLSQAGHR--LSL 659 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +NI+ + + + +Q ++ +T +P + +E +++ + + + + L ++GI Sbjct: 660 SVNISPRRFQQADFLDHVQRILKRTGANPHDLIFEITEGLLVSDFDDAIAKMSFLERLGI 719 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 ++DDFGT S L+YL +P +K + + +A++++I+ MA ++ + Sbjct: 720 RFSVDDFGTGYSSLAYLKRLPLSELKIAQTFVNDLPDDPSDVALVQTILSMAYHLNLETV 779 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + ++ L GC Q + + PL + L Sbjct: 780 AEGVETRAQLEFLKARGCTRFQGYYFSPPLPATEFFEKLA 819 >gi|119899670|ref|YP_934883.1| signaling protein [Azoarcus sp. BH72] gi|119672083|emb|CAL95997.1| hypothetical signaling protein [Azoarcus sp. BH72] Length = 952 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 142/566 (25%), Positives = 267/566 (47%), Gaps = 14/566 (2%) Query: 397 SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-P 454 Q ++ R + AV + D V D+ V + G + + G +L Sbjct: 391 EQRQATELLRLNSAVIESTHDGVVLTDLDGAIVAVNRAFTEVTGYSRDEVVGQNPRFLQS 450 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H DR + ++ + G Q E R + + + + + N G + Y+G Sbjct: 451 GRH--DRGFYLSMWAALKE--AGHWQGELWNRRKNGELFPEWLTLNAVRNEVGHVTHYVG 506 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI++ K++ + + A D LT +PNR L RL LD + R VM +D+D Sbjct: 507 VFTDISKLKQTEDRLDYLAHHDPLTDLPNRLLVLSRLEHALDGAQRR-GCRVAVMFLDLD 565 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND LG A GD++L ++ R+ L+ D L RL G+ F ++L A A Sbjct: 566 RFKTVNDSLGHAAGDELLRAVAARLRGALREEDTLGRLGGDEFMVLLEHVEAPADAAVVA 625 Query: 635 IAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + + +A P L E+ + ASIG + + +++NA+ AMY AK +G N Sbjct: 626 KNLVEVLAAPFALSNGHEVFIRASIGISFYPDDGDDFMTLVRNADAAMYRAKAQGRNTYG 685 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + ++R+ ++ L A+E+ E + Y P++ + D ++G EAL++W Sbjct: 686 FYTEDLIRSATERLALETRLRRALEHDEFVVYYQPVLGVKDGRLLGAEALVRWKPQGEPM 745 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S + F+ +AEE +I A+ ++L R + W D + +N++++ ++ Sbjct: 746 VSPAAFIPVAEETGLIVALGEWVLRDACRQVREWIDAGYAFG-QVAVNLSAEQFRRQDVS 804 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + ++++T ++++L +ES ++ E + LL RL++ G+ L +DDFGT S L+ Sbjct: 805 AMLATVLAETGLPATQLELEITESSLLEAGEHAVGLLERLKQQGVGLAIDDFGTGYSSLA 864 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL D +K + S + +AI +I+ MA+ ++ + A+ + GE ++ L Sbjct: 865 YLKRFSIDKLKIDRSFVQDIADDSNDLAIASAIVAMARALDMAVQAEGVEGEAQLELLRG 924 Query: 930 MGCDYIQDSHVASPLGFNSIL-KLLK 954 +GC Q + PL + + L+ Sbjct: 925 LGCGSYQGYLCSPPLPADEFEARFLR 950 Score = 91.2 bits (225), Expect = 8e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 17/162 (10%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-----VTTTPDIATILGLASGSMH 446 + + +R + S + ++ + R + ++ + G + Sbjct: 262 ELVRERAALRTMTQRLEEVLDCSPSV--NYTLTRGEEGWVGTWMSHNLTRMTGFSVAEAL 319 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 W +H +D + + + G +E+R+R AD W+ +R + + Sbjct: 320 AQ-GWWARTVHPDDLERASRAVRAV--EEDGHYVHEYRIRCADGGVRWIRDELRAVRDEG 376 Query: 507 GDILRYIGIANDITEQKKSLEGIL-----CNAFQDN--LTGI 541 G ++R G+ DITEQ+++ E + + D LT + Sbjct: 377 GRVVRVAGVWIDITEQRQATELLRLNSAVIESTHDGVVLTDL 418 >gi|114320714|ref|YP_742397.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114227108|gb|ABI56907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 1017 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 149/582 (25%), Positives = 283/582 (48%), Gaps = 17/582 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATI 437 + F ++ + ++ ER A+ + + + D+ V P I Sbjct: 423 ITHFVAVREDITESKRAESAIRLRER---ALESTANGILISDLRLRDNPIVYVNPAFERI 479 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G + G +L +D+D + S + RR R D W Sbjct: 480 TGYPRDEVVGRNGRFLVR---DDKDQPGLEEIRSALRSRREA-HAVIRNYRKDGTLFWNE 535 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + + P+ +G + + + ND+TE+K+ + D LTG+PNR +DRL L Sbjct: 536 LFVAPVREDDGAVHYMVSVINDVTERKRYQAELEQRTHYDALTGLPNRNLLVDRLHQALL 595 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + ++ +D+D+++ IN+ LG A GD +L ++ R+ L+ D +AR+ G+ Sbjct: 596 YARRSGR-HVALLNVDLDRFQIINESLGHAAGDQLLRTVADRLTAALRGFDTVARMGGDE 654 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L N+ A +++++A I++ +++ ++ S+G+ + ++++ Sbjct: 655 FNIVLTELRNTRDAELLAGELQEALAPSISVTGQDVFLSVSVGYTVFPDDGDGPEDLIRR 714 Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A +AM+ AK +GG + + R + +R+ ++ DL A+E EL L P + L Sbjct: 715 ASVAMHEAKRQGGGVIIRYSERSEPRQINRLTLESDLQRAIERGELRLHLQPQVDLDTGA 774 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + G EAL++W+HP+ G +S +F+ +AEE+ +I + ++LE +A + W+ Q P + Sbjct: 775 MSGAEALLRWEHPRHGLVSPMQFIPLAEEVGLIIPMGRWVLETVATQLAHWQQQGL-PVV 833 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +NI+++ L EL E ++ ++ +PS ++L +ES++ NPE + +L L+ + Sbjct: 834 PVALNISARQFLHAELVEDVRQILEGHGVAPSLLELELTESLMARNPEVAVQILRELKAM 893 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETT 912 G+ L LDDFGT S L++L P DT+K + S + E AI+ + I MA ++ Sbjct: 894 GLRLALDDFGTGYSSLAHLKRFPIDTLKIDQSFVRHVNEDGDDAAIINATIRMAHSLGLN 953 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 ++A+ + E ++ L R CDY Q + PL L Sbjct: 954 VVAEGVEREDQLEHLKRQRCDYAQGYFFSRPLSLERFAARLA 995 Score = 85.0 bits (209), Expect = 6e-14, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 57/192 (29%), Gaps = 10/192 (5%) Query: 340 LIPAWILIFIWFIGLWMAITKRL---DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 L + G + L D VL + + Sbjct: 254 FSAICALPLVAGRGGEGPVFGVLVIHSRDPSALDAAAVRVLDNLAANLSHGVWAQRLRGR 313 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + S+ + + A S V D P + G A + G L Sbjct: 314 QRRMRSELRKHARATENSPVSVLITDAEARIEYVNPSFTRLTGYAPEEVIGRDPRMLGSG 373 Query: 457 H--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H +R + ++ R Q + R D Q W I P+ ++G I ++ Sbjct: 374 HTPPE---VYRELWETVRAGRT--WQGTVQNRRKDGQLIWERQVISPLRAADGTITHFVA 428 Query: 515 IANDITEQKKSL 526 + DITE K++ Sbjct: 429 VREDITESKRAE 440 >gi|229142041|ref|ZP_04270566.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] gi|228641330|gb|EEK97636.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] Length = 891 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 173/870 (19%), Positives = 351/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 34 SYILYFSNLKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 88 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 89 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 142 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 + + +V L Y D F +NL L + L S+LI++ Y + Sbjct: 143 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 202 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 203 IKYFTPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISV 262 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 263 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 322 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 323 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 382 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 383 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 437 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR++F + + S + VM Sbjct: 438 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 496 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + Sbjct: 497 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 556 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G Sbjct: 557 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 616 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 617 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHP 676 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L R + W + I +N+++K+ Sbjct: 677 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 735 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 N L E + +I+ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 736 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 795 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 796 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 855 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL + +K L++ Sbjct: 856 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 885 >gi|313683571|ref|YP_004061309.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313156431|gb|ADR35109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 974 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 151/599 (25%), Positives = 258/599 (43%), Gaps = 12/599 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L N + L ++ V + Q + V D++W Sbjct: 381 ILVNVVSITFLDHPYMMAVYRDITEQKKADQTLRERQQELAKQTAFLRTLVSTIPDLIWL 440 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D + P + + G ++ FR ++ + Sbjct: 441 KDTEGTYLACNPMFERLYNAKESEIIGKND--FDFVDPELAQFFRENDNAAMRLGASHHN 498 Query: 481 YEFRVRAADNQFHWMIIRI-RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 EF ++ AD + I PM + +G ++ +G+A DI+E+KK E + A D LT Sbjct: 499 EEF-LQFADGSYAGTFDTIKTPMKDPSGKVIGILGVARDISERKKHEEQLEILANFDPLT 557 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+ NR L +D + D + +++ D+D++K IND G + GD++L ++ R Sbjct: 558 GLANRGLLHAHLQNSIDKANRD-KTQLALLMFDLDRFKDINDSYGHSAGDELLQMVSERF 616 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASI 658 L+ D++ARL G+ F ++L + A M ++A L I V AS Sbjct: 617 TSRLREGDLIARLGGDEFAVVLENITRPEDAGRLAQEMLGTLAEAYRLSAGALIHVGASA 676 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVE 716 G + ++ +L++A+ A+Y AK G + S R I+ + L A+ Sbjct: 677 GIVLFPDHGSDAAILLQHADAALYKAKAEGRGVYHYYTDELTDSARQRIECETRLRRAIL 736 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 N E + Y P + + IVG EALI+W+ P G +S +EF+ IAEE+ +I I ++L Sbjct: 737 NQEFEVYYQPQVHIQTGRIVGAEALIRWNSPVKGLVSPAEFIPIAEEIGLIGEIGEWVLN 796 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 R W D + + + +N+++ + + ++ + K+ Y R++L +ES Sbjct: 797 ETCRQGKIWLDMGHR--LTLAVNVSAHQVRHQNVPHMVEEALKKSGYPADRLELELTESA 854 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 +M E + +L LR GI L +DDFGT S LSYL P D +K + S + Sbjct: 855 LMQREEETVEMLHSLRAHGIRLAIDDFGTGYSSLSYLKRFPIDVLKIDKSFVDDIPYERD 914 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +AI+ +II M + + ++A+ I L GC Q + PL KLL Sbjct: 915 DMAIVSAIIAMGQALGFQVLAEGTERIEQIDFLREKGCTMYQGYFKSQPLRATEFEKLL 973 >gi|307823577|ref|ZP_07653806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307735562|gb|EFO06410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 882 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 140/549 (25%), Positives = 253/549 (46%), Gaps = 13/549 (2%) Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 D + D + I G ++ + G N L +D+ + ++ +S R Sbjct: 336 DAMLVTDANNVILKVNQAFTRITGYSAEEVIGKTPNLLSS-GQHDKTFYSSMWESI--NR 392 Query: 476 RGRLQYEFRVRAADNQFH--WMIIRIRPMSNSNGD-ILRYIGIANDITEQKKSLEGILCN 532 Q E R + + W+II + + + Y+ +DIT +K + E I Sbjct: 393 TDAWQGEIWNRRKNGEMFPEWLIITAVKEPDEKNEHVNNYVASFSDITSRKAAEEEIKQL 452 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 AF D LT +PNR+ +RL +D+ D R ++++D+D++K +ND LG GD++L Sbjct: 453 AFYDPLTQLPNRRLLQERLKHSIDVERRDGK-RLALLMLDLDRFKAVNDSLGHLAGDELL 511 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LERE 651 + RI L+ D++ARL G+ F ++L ++ A A + + P L + Sbjct: 512 QQVAVRISARLRDVDMVARLGGDEFVVLLEDIAHAEDAARVAAEIIFVLGKPFQLTQSSD 571 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKE 709 + + ASIG + + + ++ +A+ A+Y AK +G F +R+ ++ Sbjct: 572 VQIGASIGISLYPEHGASYEMLMDHADAALYQAKDQGRGCYAYFSEDQTLAARERIALET 631 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L A+E EL + Y P + + IVG EAL++W P I F+ IAEE +I Sbjct: 632 RLRRAIEQGELRVFYQPQMDIESGRIVGAEALVRWQDPIEELIPPLRFIPIAEETGLILE 691 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I ++L R W D PP+ + +N++ + ++ + +++T + ++ Sbjct: 692 IGAWVLRETCRQGRLWLDAGL-PPLTLAVNVSPQQFRRGDISALVATALNETGFPAEYLE 750 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES ++ N + LL +LR GI L +DDFGT S L+YL + P D +K + S + Sbjct: 751 LEMTESGLLENQDNVMALLNKLRSQGIRLAIDDFGTGFSSLAYLKHFPLDVLKIDKSFID 810 Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 + + I +II M + ++A+ + + L CD Q + P+ Sbjct: 811 DIPNLQDDMEIAATIIAMGHILGFKVLAEGVETPEQLAFLREKKCDSYQGYIKSPPVPAE 870 Query: 948 SILKLLKER 956 + LL+E+ Sbjct: 871 AFALLLREQ 879 Score = 74.6 bits (182), Expect = 8e-11, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 69/221 (31%), Gaps = 9/221 (4%) Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380 T+ + + + + + + + L+ ++ + Sbjct: 112 ILTFLTQWLAFHILDTDMRMAKVVLAVQSGVPLNQAKEQADQEMSGAMKVLIETMLSMFD 171 Query: 381 LIGFTVIQ---HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPD 433 + +Q V+ Q +R +V+ + D Sbjct: 172 ALSSRTMQLAKEVVERQKAEQASQDALDRLQKIASQVPGLVFQFQLFPDGSSRIPYANEA 231 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 I ++ ++ + L +H +D +NF+T + E+R++ D Sbjct: 232 IRSLYRVSPEEVSEDAAKVLAALHPDDLENFKTSFK-VSARDLTPWRQEYRLKFDDAPVC 290 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 W+ P ++G +L + G DIT+ K++ + A Sbjct: 291 WLFGNALPQRQADGSVL-WHGFITDITKHKQTEVELRIAAT 330 >gi|117928688|ref|YP_873239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidothermus cellulolyticus 11B] gi|117649151|gb|ABK53253.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidothermus cellulolyticus 11B] Length = 949 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 159/713 (22%), Positives = 292/713 (40%), Gaps = 25/713 (3%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 L ++ + + + +F L W + + + + + Sbjct: 214 PFLALFLIGAGVIVCELGDLFSLRPLALGEWSPRHPSYLLAVAGRLVLGLAVLSRTAERA 273 Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 + I + + L +LI + + + + ++ Sbjct: 274 DLVQLRRREYIAVLTPVLPV------------LAVGSLLIAAAVMRVSLRPATLILLGVL 321 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 L+ + + + + + + V S DI+ D Sbjct: 322 GILLLLAWLAARLDQLLLSRTLEHRVVERTLALRTHAKWFRSLVQNSSDIITIVDPSGVI 381 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 TP +LG +M G ++ + D IL V R EF +R Sbjct: 382 RYQTPSATRVLGYDPNAMVGQ--RFVSLVAPADVHRLEAILLDAVLRPRSTHTIEFAMRH 439 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 A + I + + + DI + D++E+K+ + AF D LTG+ NR F Sbjct: 440 AAGHWRETETVITSLVD-DHDIRGLVLNTRDVSERKELERQLTRQAFSDPLTGLANRALF 498 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +R+ L + V+ +D+D +K +ND G AVGD +L + R+ ++ D Sbjct: 499 ANRVEHALSERSRQPG-EVAVLFLDLDGFKGVNDAQGHAVGDHLLTLVADRLRRCVRPSD 557 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +ARL G+ F I+++ D A +++++A P L RE+T+ ASIG A Sbjct: 558 TVARLGGDEFAILVVGPQAEAHGVDVAERVQRALAEPFLLSGREVTLAASIGIAVTDDGT 617 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYH 725 T ++L+NA+LAMY AK FR + RV + DL A+ EL L Y Sbjct: 618 ETVDQLLRNADLAMYRAKSSRKGTYVRFRTEMHDALLARVQTETDLRHALSRRELVLHYQ 677 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + L ++VG+EALI+W HP G I +F+ +AEE ++++I + + R W Sbjct: 678 PTVNLRTGQVVGVEALIRWYHPTRGLIQPMDFIGMAEETGLVESIGAWAIRECCRQGARW 737 Query: 786 RD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 + + +N++ + L L + ++ +++T P + + +E++++ E + Sbjct: 738 QRYAQPGGVFHVAVNVSGRQL-HPRLPDIVRTALTETGMPPGALVIEVTENILVKRSEEA 796 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-----AIL 899 +L +L+ G+ + +DDFGT S LSYL P D +K + S + T++ ++ Sbjct: 797 IAVLRQLKSFGVRVAIDDFGTGYSSLSYLARFPVDVLKIDKSFVEQITDRNSGTEGTELV 856 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 R+I+ + + + +A+ I L M CDY Q + PL I L Sbjct: 857 RTILHLGRALRLGTVAEGIETREQYAALLAMSCDYGQGYLFSRPLPAEGIDTL 909 >gi|264677649|ref|YP_003277555.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni CNB-2] gi|262208161|gb|ACY32259.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni CNB-2] Length = 822 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 133/593 (22%), Positives = 267/593 (45%), Gaps = 17/593 (2%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 Q L GL+++V + + + ++ ER + + GD V D Sbjct: 236 QSGLQAGLLMLVTDVTDRKLAET--------SLHNEKERLRITLNSIGDAVIATDAEGRV 287 Query: 428 VTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRV 485 P + G ++ PI +P D + + + R + ++ Sbjct: 288 NFLNPIAEAMTGWYGRRAIGVPIEQVMPLRDSFDGHVLQNPIYLALKEQRIVGMALNSQI 347 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 D + + P+ + G + I + +D++E + + A D LT +PNR Sbjct: 348 ACRDGRVLEVEDSAAPIWDQAGKLTGAIIVFHDVSEARAMALKMTHLAHHDPLTNLPNRM 407 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 DR + L + + + + ++D+D +K IND +G ++GD +L+ L +R+ + ++ Sbjct: 408 LLQDRTSQALQQAGRNGG-QVALFILDLDHFKTINDSVGHSIGDQLLLQLAKRLQQFVRN 466 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D ++R G+ F I++ + +++ + ++ A P L ++ SIG + + Sbjct: 467 GDTISRQGGDEFIILIPEIRHVDEVSQLGERLLEACAEPFLLDGVRYDLSMSIGISLYPD 526 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723 + ++A+ AMY AK G F R M++ + +AV + + Sbjct: 527 DADNQEALYRHADAAMYQAKQEGRGRFRFFSQEIEHTLYARHMLERHMRVAVAEGDFEVH 586 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P I L +++VG EAL++W IS ++F+ +AEE +I + +L + ++ Sbjct: 587 YQPKIDLASQQVVGAEALVRWRRQDGSLISPAQFIPLAEETGLIVPLGRSVLLKACQEGR 646 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W +Q + I I +N+++ L + + +I +T P ++L +E V+ + + Sbjct: 647 RWHEQGYL--IHIAVNVSAVQLAKSNFTAMVSEIIEQTGIMPGYLELEITEGVLAKDVKN 704 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + ++ L KIG+S+++DDFGT S LSYL P D +K + S + AI+ + Sbjct: 705 TFAIINELHKIGVSISIDDFGTGYSSLSYLKQFPIDVLKIDQSFTREILTEKSSAAIVAA 764 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 II MA ++ ++A+ + + + L +MGC +Q + PL + + L+ Sbjct: 765 IINMAHGLDLRLVAEGVETQAQAELLQQMGCTVMQGYLYSRPLMPERLTEYLQ 817 >gi|307823946|ref|ZP_07654174.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307735240|gb|EFO06089.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 760 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 148/551 (26%), Positives = 231/551 (41%), Gaps = 12/551 (2%) Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 L G+ + D VT P + G + G L H N + F I+ Sbjct: 213 LVYQAIGEAIMVADADNRIVTVNPAFTELTGYSLQEAVGQSTTLLKSGHQN--EAFYQIM 270 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + G Q E R + + + I + + + + +DIT+QK + + Sbjct: 271 WHALET-TGHWQGEIWNRRKSGEIYLEWLTINTVYDDQNKVRHRVATFSDITDQKHAEQT 329 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 I A D+LTG+PNR F +RL + S + +D+D +K +ND LG G Sbjct: 330 IWQQANFDSLTGLPNRHLFYERLEQEMKKSRRVGLPLAL-LFLDLDHFKDVNDTLGHCKG 388 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L + +R+ ++ D +ARL G+ F IIL I A + + P L Sbjct: 389 DLLLKEMAQRLLNCVRSTDTVARLGGDEFTIILAELQEQDSIERLAQDILCQLTKPFELA 448 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVM 706 V+ SIG + ++KNA+ AMY AK +G N F +S R+ Sbjct: 449 GEIAYVSVSIGITLYPEDTDDIDVLIKNADQAMYAAKDQGRNCRHYFTISMQEAALTRMR 508 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 + DL A+ + +L Y PI+ L I EALI+W HP G IS ++F+ +AE M Sbjct: 509 LINDLRNALVERQFWLAYQPIVELTTGFIHKAEALIRWQHPTRGLISPADFIPVAETTGM 568 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELCEGMQALISKTLYS 824 I I ++ A+ WR + + I IN + DN + + + Sbjct: 569 IIDIGEWVFREAAQQAAQWRTKHHNE-FQISINKSPVQFQKEDNGHLAWFEH-LRELGLP 626 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++M L R GI ++LDDFGT S LSYL D +K + Sbjct: 627 GESVVIEITEGLLMDAGALITGQLLAFRDAGIQVSLDDFGTGYSSLSYLKKFDIDYLKID 686 Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + +A+ +II MA + +IA+ I + L GCDY Q + Sbjct: 687 QSFTRNLSPDANDLALCEAIIVMAHKLGIKVIAEGIETQEQCDLLMAAGCDYGQGYLFSK 746 Query: 943 PLGFNSILKLL 953 P+ KLL Sbjct: 747 PVAAGEFEKLL 757 >gi|70729435|ref|YP_259173.1| sensory box protein [Pseudomonas fluorescens Pf-5] gi|68343734|gb|AAY91340.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas fluorescens Pf-5] Length = 1114 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 146/587 (24%), Positives = 271/587 (46%), Gaps = 26/587 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 T ++ + + + E+ + A S D + + R + + G + Sbjct: 538 VTNLRDITQQQRSEAALKASEEKFAKAFHSSPDAISITERDTGRYLEVNDGFCRLTGHRN 597 Query: 443 GSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G W + + L + + + E R + + + Sbjct: 598 DEVIGRTMYQIGIWAE-------EAQLSTLLAELQIKGRVHHLEMLGRNKRGEILTLEVS 650 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + P++ + + A D++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 651 VEPITL--NETPCLLMTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 708 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F Sbjct: 709 KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFV 767 Query: 619 IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 ++L + ++ A +R+ ++ P+ L + + VT SIG A T +++ Sbjct: 768 VLLSGLEGTRNEVSEQVRQLADTLRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPTDL 827 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 LK A++A+Y AK G N + F + S+R+ ++ DL LA+ E + + P + Sbjct: 828 LKRADIALYRAKDSGRNTTQMFHNTMQKAASERLRMETDLRLALSRGEFSVHFQPQVDAR 887 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 D IVG EAL++W HP+ G S +EF+ + E+ +I + ++L+ DQ + Sbjct: 888 DNRIVGAEALVRWQHPELGAQSPTEFIKVLEDSGLILEVGTWILDEACLAFSQLIDQKLV 947 Query: 792 PP--IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P + +NI+ + + E ++ + S +KL +E +V+ N E + + Sbjct: 948 DPQHFSLCVNISPRQFRQTDFVERVEHSLHAYALPSSLLKLEITEGIVIQNLEDTINKMR 1007 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 RL+K+G+S +DDFGT S L+YL +P DT+K + S + + I+R+I+ MA+ Sbjct: 1008 RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVRDATHDPNDAEIIRAIVAMAR 1067 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 ++ +IA+ + ++ L + C Q + PL + KLL+ Sbjct: 1068 SLNLKVIAEGVETPQQLEFLQGLECHLYQGFLHSRPLPLSEFKKLLE 1114 Score = 113 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 75/497 (15%), Positives = 161/497 (32%), Gaps = 45/497 (9%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + A ++ + I+ V +L F + Q + ER Sbjct: 251 AASLEVQFRASNGQIHDGILSAQKVELEGKAYLLSTFLDTSERKRS---EQALKDSQERL 307 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 LA+ + WDW I + + A + GL H + + +R++ R Sbjct: 308 DLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLEPIPFHESFDAFFEGVPTEERNSMRDA 367 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S G Q +RV+ D ++ R R + G LR G DITEQ + + Sbjct: 368 YRSLREGPAGNYQLTYRVQLEDGSSRYLESRARLYRDEQGSPLRMAGTLLDITEQVEREQ 427 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 ++ + ++ ++ +S V +++ ++ +IN Sbjct: 428 RLITS---------------EEKFASLFQVSPD----PICVTLLETGQFIEINSSFTQTF 468 Query: 588 G---DDVLVSLTRRIGELLKFPDILARLSG-------NRFGIILISENNSLKIADFAIAM 637 G D+VL +IG L R+ N +++ +N + + Sbjct: 469 GWTLDEVLNRSAEQIGLWEDAAPRLRRIEQVIREQALNNVAVVVHHKNGQPLTCIISSRL 528 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 P + A+ +S+ ++ ++ A+ + G ++E Sbjct: 529 ITVDKQPCIVTNLRDITQQQRSEAALKASEEKFAKAFHSSPDAISITERDTGRYLEVNDG 588 Query: 698 SSFRSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + + E L + + LE L + + + Sbjct: 589 FCRLTGHRNDEVIGRTMYQIGIWAEEAQLSTLLAELQIKGRVHHLEMLGRNKRGEILTLE 648 Query: 754 SSEFMLIAEELC--MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 S + E ++ A ++ +L+ R A P+ N+ ++ LL + L Sbjct: 649 VSVEPITLNETPCLLMTARDVSLLKNA---QAQIRHLAYHDPLT---NLPNRALLMDRLS 702 Query: 812 EGMQALISKTLYSPSRI 828 + + AL+ + + + Sbjct: 703 QQI-ALLKRHNLRGALL 718 Score = 96.9 bits (240), Expect = 2e-17, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 2/139 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 H + Q + + + A+ G+ W WDI +++ + + G Sbjct: 37 HAVDPRESEQSWENAPQLLA-ALNGARLGAWYWDIESGQISWSRGTQALFGFDPRQPLPE 95 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +L + I DR S + R+R D HW+ I + + +G Sbjct: 96 NLEYLDLLPIEDRARTIRAFHSVLAGAPLEHAMHHRIRWPDGSLHWLEINGSVLPDKHGK 155 Query: 509 ILRYIGIANDITEQKKSLE 527 R IG+ +IT Q++ E Sbjct: 156 P-RMIGVIREITHQRQREE 173 >gi|71281214|ref|YP_268031.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71146954|gb|AAZ27427.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 685 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 141/576 (24%), Positives = 260/576 (45%), Gaps = 11/576 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I+ + + + ER + + WDWDI + + T + I G+ Sbjct: 108 FTVCSIRLLSEQELVASTMQKLHERLEFSQSLAHVGTWDWDITNETLAWTDETYRIFGVK 167 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 +L YIH +DR ++ + + RV + ++ + + Sbjct: 168 PQEFKATYEAFLFYIHADDRQAVIDAVNDAINNDS-SYSIKHRVIRPSGEIREVLEKGQV 226 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + NG R IG DITE +S E + A D T +PNR + + + + Sbjct: 227 LRDENGKASRIIGAVLDITELNQSKEKLEKLAHYDEKTQLPNRVLCRKEIEIRISHALLN 286 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + + ++ ID+D +K IND G GD+ L +++++ ++ LA L G+ F II Sbjct: 287 NK-KFAILFIDLDHFKNINDTQGHLAGDEFLHEMSQKLLTIIPKGMFLAILGGDEFIIIT 345 Query: 622 ISENNSLKIADFAIAMRKSIAMPIN----LLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++ +I + + K + + I I +TASIG A + + + +L +A Sbjct: 346 DYSDDEEEIKNKVTRLAKQLILLIPTKKSYENFSIDITASIGIALYPNHGNNFTSLLSSA 405 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY K+ G N+ + + + + D+ ++ + + Y L +E+ Sbjct: 406 DNAMYQVKNTGRNNYAMYHPDIEQKRLRELQLISDMRTGLKKGQFTVHYQAKQSLKTDEL 465 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G EALI+W H GNI EF+ +AE +I I F+LE+ I W+ + + Sbjct: 466 IGCEALIRWQHHTLGNIPPLEFISLAESSGLIIPIGKFVLEQSCLFIKQWQAH-SDKSLV 524 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+++ L D E + +I+ S I+L +ES++M N E + L L++IG Sbjct: 525 VSVNVSALQLKDPLFKEEVLQVINSAGISGHNIELELTESLLMENIEATIQTLHDLKEIG 584 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913 +S+++DDFGT S LSYL +P DT+K + S + + I+ + I +A ++ Sbjct: 585 VSISIDDFGTGYSSLSYLQKLPVDTLKIDKSFIDSLSSSDEDTWIVINTISLASGLKLKT 644 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 +A+ + + L +GCD +Q + P+ N Sbjct: 645 VAEGVETQEQKSILADLGCDILQGYLYSKPIPKNEF 680 >gi|152999858|ref|YP_001365539.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151364476|gb|ABS07476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS185] Length = 1015 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 149/568 (26%), Positives = 263/568 (46%), Gaps = 10/568 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T + + G + L Y +N Sbjct: 452 IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYREFEVRDQHIRLL-YCDLN 510 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 RD + + + +G+ Q E R + + + + + I +++ G R + + +DI Sbjct: 511 GRDFYTQMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K++ I A D LTG+PNR+ L+ L++ + + + N ++ +D+D +K++ Sbjct: 569 TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ R+ ++ D++ARL G+ F ++L S ++ I A + + Sbjct: 628 NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMDDHKGIERVAENILR 687 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 688 RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ L E+ EALI+W H + G +S +EF Sbjct: 748 QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR +WR + + I I +N + D L Sbjct: 808 IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 867 LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 927 DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962 Q + P+ + + PLV Sbjct: 987 GQGYLFSRPVPAAEFTQKYLQDPPLVSR 1014 Score = 110 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 2/159 (1%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 L+ + + Q + + E+ L + S VWDWDI DR+ A ILG Sbjct: 306 ALLVIAGYLDITSQALADQEVLASREQLELVLSSSDLGVWDWDIRHDRIERNARSADILG 365 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 ++ R W+ I DR +++ + + + E+R+ + + W++ Sbjct: 366 CDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTLNRKVRWILDTG 425 Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + + ++N + LR G DIT+ K E + +A D Sbjct: 426 KVVSRDANDNALRMCGTYTDITDAKLIEESLKLSALVYD 464 Score = 81.2 bits (199), Expect = 8e-13, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 74/273 (27%), Gaps = 10/273 (3%) Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 + + + F G+ + + Y + + I + IV +I+ Sbjct: 65 FFDTRSVILCISGLFFGGLPTFIAVVMTALYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386 + A + L + + L N I P L + ++ + Sbjct: 125 RKSYLANISGREIFLFAYAVHIIMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184 Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q D + I + + P + +L + + Sbjct: 185 LLSRRFELECDEQIRLQDDFLFRSQFNVGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 W H +D ++ + + + + R D + + + Sbjct: 245 L--RMTWAQITHPDDLESDTLQFELMLRGEIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + L I DIT Q +L A ++ L Sbjct: 303 SNTALLVIAGYLDITSQ--ALADQEVLASREQL 333 >gi|229020519|ref|ZP_04177266.1| Sensory box/GGDEF [Bacillus cereus AH1273] gi|228740790|gb|EEL91041.1| Sensory box/GGDEF [Bacillus cereus AH1273] Length = 885 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 179/857 (20%), Positives = 352/857 (41%), Gaps = 34/857 (3%) Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGA--VVTFIMEISTPNLPQ 172 S F L + R+ D F ++P + F++ + L + Sbjct: 41 SRLFWIPLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSDFFYLLFLISFAFAFLYE 97 Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLG 230 I +++ N + + + A F +Y++ ++ I T + +V L Sbjct: 98 I-IYDRNLLEQLSTICDI-------CIIVTAQFTLSYYLLIERTIHIFTTSYIDMFVQLT 149 Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITF 287 Y D FL +NL L + L S+LI++ Y + + + T Sbjct: 150 YPMADLLFLLIGINLLFRPLFLLPKQVGALLGSALILYATTDAIYAYIKYFQPEHSMFTV 209 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 + + ++ + + + ++ I + Sbjct: 210 APFYQVTLVLVAIACILHTKEPEKQEQVLLTPRLGESIRLSLPYISVVMLIVFILVENVF 269 Query: 348 F-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLATGYFSQ---GIFS 402 I IGL + L ++ L+L + Q L T + ++ Sbjct: 270 APIVVIGLMVTFAFVLIRHMLVRRQNKILLLAQMQFNSELEKQIELRTEDLVEQKNELYH 329 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + + D ++ D+ + + T+LG + + + ++ D + Sbjct: 330 NQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLE 387 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + E R + +++ + P+ I + DITE Sbjct: 388 EIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGVYLMIKDITES 444 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K+ E I A+ D LT + NR+SF L + + VM ID+D++K IND Sbjct: 445 KQQQEQINFLAYHDTLTELANRRSFHQHLEKAIARAKVSKRP-FAVMFIDLDRFKVINDT 503 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD +L+++ +R+ + LARL+G+ F I++ + + A + ++ Sbjct: 504 LGHRVGDLLLIAVAKRLERISTQNMKLARLAGDEFTILIENYKKRTDVKRIADMIVVAMN 563 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P + + + ++ SIG A + + +L++A++AMY AK++G N + ++ Sbjct: 564 EPFEIENQHLHISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKK 623 Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 I++DL LA+ N+E YLVY P I +I+G EALI+W HP G+IS EF+ I Sbjct: 624 MERKARIEKDLPLALVNNEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPI 683 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 EE + + ++L R + W+ + + +N+++++ N+L E + ++ Sbjct: 684 VEETPQVVPLGHWVLRESCRQLKIWQS-FGYTSLKMSVNLSAREFQQNQLIENISRILKD 742 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P + L +E + M + + + L +L++ GI ++DDFGT S L+YL P DT Sbjct: 743 VEIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDT 802 Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + AI+ +I+ +A + +++A+ I E +K L + C+Y+Q Sbjct: 803 LKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLKKNNCNYMQGY 862 Query: 939 HVASPLGFNSILKLLKE 955 + + PL ++ L++ Sbjct: 863 YFSKPLTSKEFIRFLQK 879 >gi|91776976|ref|YP_546732.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] gi|91710963|gb|ABE50891.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s) [Methylobacillus flagellatus KT] Length = 1238 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 138/622 (22%), Positives = 271/622 (43%), Gaps = 37/622 (5%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---GIFSDGERQSLAVLG 413 L ++ V + ++ V A + + E+ L + Sbjct: 620 WSMPILSSNQQVLGTFAVYSREVRVPEQREMELVSACSHIAGIAIERHHSEEQLKL-LET 678 Query: 414 S----GDIVW--DWDIVR----DRVTTTPDIATILGLASGSMHGPIRNWLPYIHI----N 459 S DIV + D + ++G + + G +L Sbjct: 679 SIARLNDIVLIAEADSEGKQNPRIIFVNKAFERLMGYTAEEVLGKDPGFLDG--PNTQME 736 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + +L ++ E + + W+ + I P++NS G ++ + DI Sbjct: 737 ELWRVKALLKQ-----GESVRTELVNYRKNGEEIWLEMDILPIANSAGVFTHWVSVQRDI 791 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE+K + I AF D LT +PNR LDRL L S ++ +D+D +K + Sbjct: 792 TERKAAESRIQHLAFYDMLTNLPNRLLLLDRLEQALLNSMRLKR-SGALLFLDLDNFKTL 850 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFA 634 ND G GD +L + +R+ ++ D +ARL G+ F +++ + + + + + A Sbjct: 851 NDTHGHDFGDMLLEQVAQRLLNSVRITDTVARLGGDEFVVVVENLSEQGCNAAQEASLVA 910 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + +++ P L E + SIG A + ++T E+LK A+LAMY AK G N Sbjct: 911 DKILLALSQPFRLSGYEHYSSCSIGVALFCNEQQVTVDELLKRADLAMYEAKAAGRNTFR 970 Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + ++EDL A+ E+ L Y P + ++G EAL++W+HP+ G Sbjct: 971 FFDPAMQALITKRAAMEEDLRQALRRDEMRLYYQPQVD-SQGSLLGAEALVRWEHPQQGL 1029 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S + F+ +AEE +I I ++L +++W + + + +N++++ L ++ Sbjct: 1030 LSPAAFIELAEETGLILPIGEWVLRTACMQLVAWAGRPETAGLVLSVNVSARQLHQHDFI 1089 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + +++ +T +P +KL +ES ++ N E + L+ +G+ ++DDFGT S L+ Sbjct: 1090 DRVFSILKETGANPQSLKLELTESTLVENIEEMITKMNILKAMGVGFSMDDFGTGYSSLA 1149 Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P +K + S + +I+++II + + ++A+ + + L + Sbjct: 1150 YLKRLPLSQLKIDRSFVRDVLVDSNDASIVQTIIALGHGLGIEVVAEGVESWEQQQFLEK 1209 Query: 930 MGCDYIQDSHVASPLGFNSILK 951 GC Q P + + Sbjct: 1210 HGCLEYQGYLFGRPQPAEQLER 1231 Score = 76.9 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 55/401 (13%), Positives = 117/401 (29%), Gaps = 83/401 (20%) Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRL-----------DNDIIQPALVGGLVLIV 379 + RA A + + ++ L N + AL G+V + Sbjct: 289 LGRMSRARWDFIAHTFAELGLVEPGYSLDGFLWKDGDDATNPLVNWFMAGALFTGIVAGL 348 Query: 380 ILI------------GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 +L+ + + V + S E+ L + + + Sbjct: 349 VLLWNLQIRRRVRERTQALHEEVRQRRMVEMELQSSQEQVRLTFHSASAGIAMTSVDGQF 408 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS------FVGYRRGRLQY 481 + P I+G + + +H D ++ R LD+ + + R Sbjct: 409 LLVNPAFCEIVGYSEDEL--------KKMHCRDLNDGRNELDAWKNRQWLLEGKIDRSVV 460 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E R + W+ I + +G I + +I +QK+ + Sbjct: 461 EKRYTTKSGRSVWVRISASLIKGPDGSPRNLIKVVENIEQQKRQETLQVEQ--------- 511 Query: 542 PNRQSFLDR-----------LTTILDLSATDDNLRPTVMVID-----------------I 573 + L+R L T+ L +L ++M++D + Sbjct: 512 ---RHLLERIAAGAVLDDVLLATVTLLEEQYPDLMFSIMLLDKANAFARGIALRLPKRYL 568 Query: 574 DKYKKIN-----DVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNS 627 DK K + G A + V + +LL LAR G R + +++ Sbjct: 569 DKLKGLQIGPAAGSCGTAAYERRTVVVADIQQDLLWRNYRDLARRFGLRACWSMPILSSN 628 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 ++ + + +P ++ + I + Sbjct: 629 QQVLGTFAVYSREVRVPEQREMELVSACSHIAGIAIERHHS 669 >gi|53802775|ref|YP_115468.1| sensory box protein/response regulator [Methylococcus capsulatus str. Bath] gi|53756536|gb|AAU90827.1| sensory box protein/response regulator [Methylococcus capsulatus str. Bath] Length = 710 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 137/577 (23%), Positives = 255/577 (44%), Gaps = 16/577 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + + + S + + + V P + G + G Sbjct: 133 RRLQREIAEHKAAREQLQVAGMVFSASSEGMLLVNADNRIVAVNPAFVALTGYGPEDVVG 192 Query: 448 P-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + H F + + + G + E R + + + + I + + Sbjct: 193 KDPKLLQSGRH---GPAFYQAMWAALEA-TGTWRGEIWNRRRNGEEYAEHLTINTIYDEA 248 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G + + + +DITE+K S I + D LT +PNR+ +RL + + D R Sbjct: 249 GKVHLRVALFSDITEKKASEALIEFQSCYDALTRLPNRRLLAERLALASERAHRDRG-RV 307 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL--ARLSGNRFGIILISE 624 ++ ID+D +K++ND LG GD +LV + R+ ++ + + ARL G+ F +I+ Sbjct: 308 ALLYIDLDHFKEVNDTLGHHQGDALLVQVAHRVRRCVRESETVTVARLGGDEFTVIVPDF 367 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ A A+ S++ P L ++ V+ASIG + + +L+NA+ AMY A Sbjct: 368 EGMDEVERLARAIIDSLSEPFRLGDQLAHVSASIGITVFPDDAADTDGLLRNADQAMYAA 427 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N ++F R+ + + + L AV+ +L L Y PI+ L + EAL+ Sbjct: 428 KRAGRNGYQAFNPEMQRAMSMRVRLSQALRDAVQAGQLRLHYQPIVELASGRVRKAEALL 487 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+HP++G +S + F+ IAE+ I I ++ ER A WR + + IN++ Sbjct: 488 RWEHPEFGEVSPAAFIPIAEDCGSIHCIGDWVFERAACQAARWRSRFG-TDFQVSINVSP 546 Query: 803 KDLLD--NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + ++ + + S + L +E+++M + L + R G+ + L Sbjct: 547 RQFQAGGRDFGRWLER-LGELGLDGSMLALEITETLLMDTDQAIADKLAQFRAAGVQIAL 605 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL D +K + + + T + L +I+ MA + +IA+ + Sbjct: 606 DDFGTGYSSLAYLKEFRIDYLKIDRTFVRDMTPDSKSFLLSEAIVTMAHRLGLKVIAEGV 665 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R+GCDY Q + PL ++ LL+ Sbjct: 666 ETPQQYALLERIGCDYFQGYLFSRPLPEDAFEGLLRS 702 >gi|302872893|ref|YP_003841529.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caldicellulosiruptor obsidiansis OB47] gi|302575752|gb|ADL43543.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caldicellulosiruptor obsidiansis OB47] Length = 1016 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 141/563 (25%), Positives = 269/563 (47%), Gaps = 11/563 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + E+ V D++++ DI + ++ + + + WL Y+H + Sbjct: 449 LQEEKEKYKFLVENVSDLIFELDINQKKIELYGKLKDSFDVDIICSTKSLLVWLEYLHED 508 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 DR + ++ +FRV+ ++ W+ IR + + + + + D Sbjct: 509 DRGKVFRKFQDAIFLGDEDVELDFRVKDKCGRWRWLSIRAHINYDEQKNPEKIVAVCVDW 568 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T +K+ + I A+ D LTG+PNR+ F + L L + + V++IDID +K I Sbjct: 569 TAKKEYEDRIEHIAYYDTLTGLPNRKLFEEILEDWLKKT-ETEKSTGAVVLIDIDNFKDI 627 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADFAIA 636 ND+ G GD+ L ++ ++ E LK AR+ G+ F +IL ++ +F Sbjct: 628 NDIYGHEAGDEYLKAIGEKVLEYLKKLEVKTFFARVGGDEFAVILHGLAKKEQVIEFCAQ 687 Query: 637 MRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + K I + +R + +AS+G + + E+ +N ++A+ AK G N + Sbjct: 688 LLKIFESEIYIESIDRHLFTSASMGVSFYPDDGKNVKEIFRNVDMALSSAKDNGKNDFQI 747 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ I+++L A+E + L Y P+I L D EI +EAL++W+ P G + Sbjct: 748 FMPFILMKNLKKIGIEKNLKKAIEEDQFELYYQPVINLKDMEIHSVEALLRWNLPGKGMV 807 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S EF+ +AEE +I I ++E+ D+ +W + + + IN++ + + Sbjct: 808 SPLEFIPVAEESGLIVKIGEMVIEKAFSDLKNWERKGIDY-LHMAINLSVRQFKTKFFID 866 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ LI + P +I +E+ + N + S +L L ++GI +DDFGT S L Y Sbjct: 867 VVKKLIERYSVDPQKISFEITETGAVENFDVSLKILSFLCQMGIKFMIDDFGTGYSSLIY 926 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P VK + S ++ +++ AI+ I+ MA I+ ++A+ + + +++ L + Sbjct: 927 LRRLPIGGVKIDKSFISEIESSKESRAIVEGIVLMAHKIDLKVVAEGVETKKELEVLKEV 986 Query: 931 GCDYIQDSHVASPLGFNSILKLL 953 GCD+ Q + PL + KLL Sbjct: 987 GCDFAQGYLFSKPLPKTEVEKLL 1009 Score = 64.6 bits (156), Expect = 8e-08, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 2/164 (1%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 N + + L +I + TV+ + G + L + IV ++ Sbjct: 258 NRETIFSFLFILAIIFFAVSITVLVMIKINKRLEHGKRAYEIYAQLLADNANAIVLTLNL 317 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + + G S + G W+ + + + L + + +E Sbjct: 318 KGEIIYFNNFAQQLTGYKSEEVVGKK--WVDIFIPSHKREYMENLFKKIAEEKILNNHEN 375 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + D + W++ + + + I DIT+ KK+ Sbjct: 376 EIITKDGEIKWILWNNALIESPYLNEPLIISTGLDITQIKKTQR 419 >gi|114564926|ref|YP_752440.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114336219|gb|ABI73601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 1487 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 142/568 (25%), Positives = 257/568 (45%), Gaps = 17/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--P 454 + + S+ + A + + + D+ ++ + IL + G + L Sbjct: 926 QRTLESEANLLAQAFENTSEGMLILDMKKNIKISNAAANLILAAKKSDLAGKPFSDLVFE 985 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + D + + E +D + + + M N NG L Y+ Sbjct: 986 TVEPFDMEEVFD--------KERFWTGECEFNCSDGSRCPVWVNVSTMFNMNGSALHYVV 1037 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + +DITE+K + + A D LTG+ NR F RL +++ + ++ +D+D Sbjct: 1038 VFSDITERKHNELHLRRLANNDMLTGLANRAMFSRRLGQVIETAKQQKET-LALLFLDLD 1096 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND G ++GD +LV R+ L +L R G+ F I+L + I A Sbjct: 1097 RFKHVNDSYGHSMGDALLVEAASRLQSCLSEEHLLCRFGGDEFVILLRDAKDVDTINHIA 1156 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + K I P L RE ++ SIG + W+ T ++KNA+LAMYHAK G H + Sbjct: 1157 KQLLKQIETPFKLYGREFFISTSIGISIWSDDDQTPETLIKNADLAMYHAKEEGRGHFQY 1216 Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGN 751 + ++ + I+ DL A+ +E L Y P I IVG+EALI+W HPK G Sbjct: 1217 YSAERNAEALYHLRIEADLHRAILCNEFELYYQPQIDVDQQNSIVGVEALIRWKHPKDGM 1276 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 ++ F+ IAE +I I+ ++L + D W Q I + +N+++ + Sbjct: 1277 VNPDVFIGIAESCGLIVEIDRWVLTQACLDGADWH-QRYQSEITVSVNVSAMHFRQPDFI 1335 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + A + +T + + +E V+M + + L L ++GI + +DDFGT S L+ Sbjct: 1336 DFLTATLHQTGMPARCLSVEITEGVLMKEIDIASQHLRALEQLGIDVAIDDFGTGYSSLA 1395 Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL + +K + S + + AI+ SII +A+N+ ++A+ + + ++ + Sbjct: 1396 YLRSFQVNILKIDRSFLIHIDTHQADQAIVSSIIELARNLSLEVVAEGVETSEQLAQVVQ 1455 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957 GC IQ + A P+ + +K + Sbjct: 1456 RGCHIIQGYYFAKPMPKAELELDIKRQM 1483 Score = 82.7 bits (203), Expect = 3e-13, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 7/151 (4%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + + ER ++ GS +W+W ++ +LG + Sbjct: 791 RQRQIHRFKQMNHALVESDERLRQSLKGSDSDLWEWHASTQVLSLDNR-GGVLG--PDTH 847 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPMSN 504 +P IH +D + ++ V + + E+R R D+Q+HW+ I+ R + Sbjct: 848 INVKLEDIP-IHQDDVERITSVWQDLVNGKVEMIDAEYRYRNQHDHQWHWLRIKGRAIEV 906 Query: 505 S--NGDILRYIGIANDITEQKKSLEGILCNA 533 NG ++ G+ DIT+Q+ A Sbjct: 907 DINNGRLIYAAGMYTDITQQRTLESEANLLA 937 >gi|94495787|ref|ZP_01302366.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingomonas sp. SKA58] gi|94424479|gb|EAT09501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingomonas sp. SKA58] Length = 854 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 150/746 (20%), Positives = 297/746 (39%), Gaps = 32/746 (4%) Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN 276 + ++L L LV G + L+I + Sbjct: 20 SFFHIARLWPLILLSKMCVILILGLLVFRQQGWSQFLLLGLMFLVDGMLMILPRQD-RFR 78 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + ++ L ++ + + + + ++ + G R Sbjct: 79 SLLPHIQTWAMLPMLFLSGLSYSAWIAGALGWTQTASPALTALSQLVVALLVACIVGDRR 138 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF-----TVIQHVL 391 + I ++ + ++ L+ V V + Sbjct: 139 ----LLGMSYFLGLLIAAFIGSAGLIPIGLLSSGLLVMAVATVRQASVDRDRAMAMHRQD 194 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 S + + ER W+ D + + + L GS+ G + Sbjct: 195 LRAQRSDRLLQEHER------SGRGWFWETDRQGSLTYISDTLCETMNLPCGSLIGRV-- 246 Query: 452 WLPYIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + DR L + R G + + + W I +P+ N G Sbjct: 247 FTDILRPGDRQAGDGERTLGFHLSARTGFSEIPVCAALSK-EERWWSISGQPVFNEYGQF 305 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + G D+TE ++S + A D+LTG+ NR L L + T+M Sbjct: 306 HGFRGSGTDLTEMRRSQAEVTRLAQYDSLTGLANRIQMLRSLEQAVAARHGRPG-ECTLM 364 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++D+D++K +ND LG GD +L +++R+ ++ ++ R G+ F I+L ++ Sbjct: 365 MLDLDRFKSVNDSLGHPAGDTLLRQVSQRLQRVVGEKGLVGRQGGDEFKILLPRHHDKSS 424 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A A+ ++A P + + + SIG + +T+ +++NA+LA+Y AK G Sbjct: 425 LELLAKAIIATVAEPYTIEGTSVVIGVSIGVSMSPQDGVTAEALIRNADLALYAAKGDGR 484 Query: 690 NHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + DR ++EDL A+ L+LVY P++ E+I G EAL++W+H Sbjct: 485 GVHRFYAPEMHADAEDRRKLEEDLRHALAADGLHLVYQPVVSSRTEQITGYEALLRWNHA 544 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G IS + F+ IAE+ +I + ++L D W + I + +N++ + Sbjct: 545 TRGPISPALFIPIAEDTGLIGPLGEWVLRTACLDAAQWPE-----GIRVAVNVSPTQFAN 599 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + ++ +P R++L +ESV + + + + RL+ +G+ L LDDFGT Sbjct: 600 PGFPSTVMNALAAAQLAPERLELEITESVFLNDDSDTDSMFARLKSLGVRLALDDFGTGY 659 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L YL PFD +K + S + G+ + AI+++I+ +A+ ++ A+ + ++ Sbjct: 660 SSLGYLKKAPFDKIKIDQSFVRGAAIKGSRNSAIIKAIVSLAEALDMDTTAEGAETQDEL 719 Query: 925 KELTRMGCDYIQDSHVASPLGFNSIL 950 + ++GC +IQ P+ +L Sbjct: 720 ALIRQLGCSHIQGYIYGRPMPMEDVL 745 >gi|94265262|ref|ZP_01289021.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93454243|gb|EAT04559.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 989 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 145/586 (24%), Positives = 273/586 (46%), Gaps = 13/586 (2%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPD 433 L + + + + + + ER L A+ S D V D+ ++ P Sbjct: 256 LYGLPATLEQVAQLRQLQDEQRALRASEERHRLQVAALNASRDGVVITDLEPKIISVNPA 315 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 TI G + G + L H +DR ++++ G Q E R D + + Sbjct: 316 FTTITGYHEKEVRGKSPSLLKSGH-HDRAFYQSMWAQLKQQ--GFWQGEVWNRRKDGEVY 372 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 ++ I + + G+ Y+G+ D+T ++S E + A D+LTG+PNR L Sbjct: 373 PELLSISTVYDEAGEPSHYVGVKTDLTNLRRSEERLQHLAHHDHLTGLPNRLLLEALLEH 432 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L+ + + + R V+V++ D+++ IN+ +G A GD++LV++ +R+ +L+ D LARL+ Sbjct: 433 ALERAQREQS-RLAVLVLNCDRFRTINESVGYAAGDELLVAVVKRLQSILRAEDTLARLA 491 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSE 672 G+ F ++L ++ ++ + + + P L E+ + AS+G + + T + Sbjct: 492 GDEFALVLEGLDDYREVEFTLQRLWQVLEQPFALPDGYEVHIQASVGISFYPQDDDTVAG 551 Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 +L A+ A+ AK GGN + + ++ L A++ E L Y P + L Sbjct: 552 LLVRADGAVNQAKDGGGNRCYYATSTLNEESRRGLELEAALRRALQQREFLLYYQPKVAL 611 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 I G EALI+W P G ++ EF+ AE +I A+ ++++ R + WR++ Sbjct: 612 AGGRITGAEALIRWQRPGHGLVAPGEFIPAAERSGLIVAMGAWVIDEGCRQLRRWREEGL 671 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + + +N+++ L ++ +++ + ++ L +ES++M PE + + Sbjct: 672 G-DLRLAVNVSASQFRAPGLVTALKQALAEHRVAAGQLTLELTESMLMSEPEAAIARMEE 730 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 L+ +G+ L LDDFGT S + L P D +K + S + G + I SII MA Sbjct: 731 LKALGVGLALDDFGTGYSSFANLSRFPIDQLKIDRSFVEGIVSSPDAATIAASIIAMAHQ 790 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + ++A+ + + L R GCD IQ + PL +LL+ Sbjct: 791 MRLKVVAEGVENQPQANYLRRNGCDEIQGFLFSKPLPAADFARLLE 836 >gi|302878206|ref|YP_003846770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302580995|gb|ADL55006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 908 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 146/588 (24%), Positives = 277/588 (47%), Gaps = 19/588 (3%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 G V +V++ ++ + + + + V +D + Sbjct: 332 GQAVGVVMVFHDVSKRYA-----LLAELRAARAQFETLFEQLPEGVLLFDENLAVIMHNR 386 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 + A +L +S + + +D+ + + GR +E R R + Sbjct: 387 EAARLLEYSSKETLQLRVFDIEAM--DDQAAIVARREKL--QQTGRDDFESRYRTRSGRL 442 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 + + ++ + +G I + + DITEQK++ I A+ D LTG+PNR+ DRL+ Sbjct: 443 LEVDVSVQVVQLPDGRIA-FQTLFRDITEQKQAALQIEHLAYHDQLTGLPNRRLLHDRLS 501 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 + + D + V+ +D+D +K +ND LG GD +L + R+ ++ D LAR+ Sbjct: 502 HAISSAVRRD-AQLAVIYLDLDHFKDVNDSLGHGTGDALLQVVAERLLGCIRADDTLARM 560 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F ++L N++ + A + ++ P+ + E+ +T S+G + + E Sbjct: 561 GGDEFVLMLNDLNDADSASTAAEKIMHELSRPVCIGGDELRITPSLGISLCPGDGRDADE 620 Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 +LK A+ A+Y AK +G + +RV ++ L A+E E L Y P + L Sbjct: 621 LLKYADAALYQAKQQGRATYRFYTQALHDQSVERVQLERLLRHALERHEFELYYQPQVDL 680 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 D I+G EALI+W+HP G +S F+ IAE +I I ++++ R W DQ Sbjct: 681 RDGRIIGCEALIRWNHPGMGQVSPGRFIPIAEHSGLIIDIGNWVMQEACRQPKRWHDQGR 740 Query: 791 MPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + N++++ + EL + ++A ++++ +R+++ +ES+++ +P+ +L Sbjct: 741 D--IKVSFNVSARQFMRPAELMQSLKAALAESGVDATRMEVELTESLLL-DPQGMGEVLH 797 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAK 907 +R +GI L LDDFGT S LSYL P + +K + S ++ + ++++II MA Sbjct: 798 EIRALGIQLALDDFGTGYSSLSYLRRFPINILKIDQSFVSDADNNPDDAEMVKTIIGMAH 857 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 N+ +++A+ I E L GC Q H + P+ +LL+ Sbjct: 858 NLRMSVVAEGIETEAHRALLAMQGCRVGQGYHYSRPVPAEEFSRLLQR 905 Score = 66.1 bits (160), Expect = 3e-08, Method: Composition-based stats. Identities = 30/292 (10%), Positives = 78/292 (26%), Gaps = 46/292 (15%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-R 450 + I R GD V D+ + +LG G G + Sbjct: 215 QVYRALREIVLSDARIRAIYQAIGDAVLVADMQGRVESINATAQKLLGWREGEARGRLIS 274 Query: 451 NWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 ++ + + +S + + +R D + P+ + +G Sbjct: 275 EVFELYDVHHQQRVESPAESVLRDGCPIPMSNGMMLRRRDGSELAVEDSAAPVRDEHGQA 334 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + + + +D++++ L + R F + V+ Sbjct: 335 VGVVMVFHDVSKRYALLAELRAA-----------RAQFETLFEQL----------PEGVL 373 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 + D + I + R+ E + R+ + + ++ Sbjct: 374 LFD-ENLAVI-----------MHNREAARLLEYSSKETLQLRV------FDIEAMDDQAA 415 Query: 630 IADFAIAMRKSIAMPINL-----LEREITVTASIGFASWTSSKITSSEMLKN 676 I ++++ R + V S+ +I + ++ Sbjct: 416 IVARREKLQQTGRDDFESRYRTRSGRLLEVDVSVQVVQLPDGRIAFQTLFRD 467 >gi|229175975|ref|ZP_04303471.1| Sensory box/GGDEF [Bacillus cereus MM3] gi|228607468|gb|EEK64794.1| Sensory box/GGDEF [Bacillus cereus MM3] Length = 887 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 174/870 (20%), Positives = 353/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 30 SYILYFSNRKEGLPRLFWTVLSVGTLSYFIGDMVVAYQRLILKDYYTF---VDPSD--FF 84 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 85 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 138 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 + + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 139 SSTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLSKKVGALLGSALILYATTDAIYAY 198 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 199 IKYFTPEYSMFTVTPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISV 258 Query: 335 ERAVLLIPAWILI--FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + + + + +++ L+ + Q L Sbjct: 259 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 318 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 319 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 378 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + + E R + +++ + P+ + I Sbjct: 379 --YYSLTYEEDLEEIISAFHRVKKGK--SISLEVRAYHKNRDIYYLHVTAVPIFLKD-HI 433 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR++F + + S VM Sbjct: 434 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEISKR-PFAVM 492 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ L LARL+G+ F I++ + Sbjct: 493 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERLSTPNMKLARLAGDEFTILIENYKKRPD 552 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G Sbjct: 553 VKKIADTIVAAMNEPFEIESQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 612 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EALI+W HP Sbjct: 613 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALIRWKHP 672 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 673 LLGDIPPCEFIPIVEETPQVVPLGHWVLKESCRQLKIWH-TFGYTDLKISVNLSAKEFQQ 731 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M N + + L +L++ GI ++DDFGT Sbjct: 732 DHLIENISQILTDIKVDPKHVTLELTERIAMINEKETLSRLKQLKEYGIQTSIDDFGTGY 791 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 792 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 851 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL + +K L++ Sbjct: 852 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 881 >gi|169827638|ref|YP_001697796.1| hypothetical protein Bsph_2091 [Lysinibacillus sphaericus C3-41] gi|168992126|gb|ACA39666.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 581 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 138/551 (25%), Positives = 270/551 (49%), Gaps = 12/551 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468 + + D + V P + G + G +H + + + Sbjct: 27 IFENVSEGIMITDEYKKIVMVNPAFEFVTGYKRDDVVGKTPAVLQSGVH--ELPFYLEMW 84 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + G Q E R + + I ++N G + Y GI D++E+K Sbjct: 85 EQIRQE--GIWQGEIWNRRKTGDVYPEWLTIVCVTNDEGKVTNYCGIFTDLSERKIVENE 142 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + D+LT + NR ++++R+ +L+ SA +++ V +D+D++K+IND LG AV Sbjct: 143 LEKRLLTDSLTEVSNRFAYIERMDNLLESTSAISHSVQHAVYFLDLDRFKQINDTLGHAV 202 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L+ + +R+ +LLK DI+AR G+ F I L + N + A FA + +I P+ + Sbjct: 203 GDSILIEVAKRLKQLLKNKDIIARYGGDEFVITLTNVKNVKEAAKFAEQIISNIEKPMMI 262 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705 +E+ ++ SIG + + + E++ A+ AM ++K G N + + Sbjct: 263 NGQEVFISTSIGVSVYPVDGRNTEELINCADRAMTYSKKNGLNGYSFYFDELQTDAQRVL 322 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ +L A++N E L + P I + +E+I GLEAL++W++ + G +S EF+ AEE Sbjct: 323 LLDSELRRAIDNREFELHFQPKICMDNEQIQGLEALVRWNNERLGFVSPGEFIPYAEETG 382 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I ++ +LE+ +I + I + INI+S + + +Q ++ + Sbjct: 383 LIIPLSEVILEKACEAVIQMQKYGW--KIPVAINISSIHFKQHNFLDSIQTILERYNMPA 440 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 + ++ +E VM + + L RL+++G +++DDFGT S LSYL P D +K + Sbjct: 441 NNFEIEVTERTVMNSANETVSKLVRLKQLGFKISIDDFGTGYSSLSYLVRFPLDCLKIDR 500 Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + +++ A++ +II M+ ++ ++A+ + + L +M CD IQ + + P Sbjct: 501 SFIQHIGSLDEKQAVVDAIIQMSHRLKMKVVAEGVEQAQQVDILRKMNCDIIQGYYYSKP 560 Query: 944 LGFNSILKLLK 954 L N +++ ++ Sbjct: 561 LPLNDLMEFME 571 >gi|104780809|ref|YP_607307.1| sensory box protein [Pseudomonas entomophila L48] gi|95109796|emb|CAK14501.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas entomophila L48] Length = 1124 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 144/585 (24%), Positives = 266/585 (45%), Gaps = 18/585 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLA 441 T ++ + + + E+ + A S D + + + + G + Sbjct: 541 SVTTLRDITQQQRAEAALKASEEKFAKAFHSSPDAIIITERQSGCYLEVNDGFCRLTGYS 600 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + G + I +D+ L + + R E R + + + P Sbjct: 601 ATEVVGRSVYDI-GIWADDKQR--AALLNELRERGRVHHREMLGRNKRGDILTVEVSVEP 657 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + S + + A D++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 658 I--SLNETDCLLLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 715 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F ++L Sbjct: 716 -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 774 Query: 622 ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 K+ + A +R+ +A P++L + + VT SIG A T +++LK Sbjct: 775 SGLEGSRELVESKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKR 834 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N + F + S+R+ ++ DL LA+ EL L + P + D Sbjct: 835 ADIALYRAKDSGRNTTQLFHSTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 894 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792 IVG E L++W HP+ G ++F+ + EE +I + ++L+ + Sbjct: 895 IVGAEVLLRWHHPQLGQQPPAQFIQVLEESGLILEVGSWILDEACDACARMLEDGLIDAD 954 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + N+ E + + + L +E +V+ N E + + L+ Sbjct: 955 DFSLCVNISPRQFRQNDFVERVLRSLDDYRLPRRMLTLEITEGIVIQNLEDTISKMSELK 1014 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 + G+S +DDFGT S L+YL +P D +K + + + + I+R+I+ MA+++E Sbjct: 1015 RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQTFVRDAPVDPNDAEIVRAIVAMARSLE 1074 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + ++ L R+GC Q + PL ++L E Sbjct: 1075 LAVIAEGVELTEQLEFLERLGCHLYQGYLHSRPLPLPEFRQMLME 1119 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 G+ L + + Q + ER LA+ + WDW I + + Sbjct: 276 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 335 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 A + GLA H + + ++R+ R S G Q ++V+ + Sbjct: 336 ARAAQLHGLAPVPFHESFDAFFEGVPEDERNVMRQAYRSLREGPAGNYQITYQVQLENGT 395 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ R R + +G+ LR G DIT+Q + + Sbjct: 396 TRFIESRARLYRDEHGNPLRMAGTLLDITDQVEREQR 432 Score = 94.2 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + + A+ G+ W WDI RV+ + + G ++L + Sbjct: 48 SEQAWQNAPQLLAALNGARLGAWLWDIDSGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 107 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR R + V R+R D HW+ I ++NG IG+ Sbjct: 108 PEEDRARTRQAFQAVVNGEPVEQAMRHRIRWPDGSVHWLEINGSLTHDANGHPQ-MIGVI 166 Query: 517 NDITEQKK 524 +I+ Q++ Sbjct: 167 REISRQRE 174 Score = 45.7 bits (107), Expect = 0.037, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 45/159 (28%), Gaps = 12/159 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + Q + + E+ + S D + + + P + I G + Sbjct: 417 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFSQIFGWET 476 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G L + + + I V + +I R + Sbjct: 477 DQVIGRTAEEL-GLWAESSERAQRIERVIRDQALS--NVAVGVNHRNGTPLTCVISSRLI 533 Query: 503 SNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ 535 + + + DIT+Q+++ E AF Sbjct: 534 -SVDNQPCS-VTTLRDITQQQRAEAALKASEEKFAKAFH 570 >gi|229158861|ref|ZP_04286919.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] gi|228624845|gb|EEK81614.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] Length = 887 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 173/868 (19%), Positives = 349/868 (40%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 30 SYILYFSNMKEGLPRLFWTILSVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 84 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L+E +D + + I I + A F +Y++ ++ I + Sbjct: 85 YLLFLISFAFAF-LYEIIHNRDLLEKLFMICDICI---IVTAQFTLSYYLLIERTIHISS 140 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D F +NL L + L S+LI++ Y + Sbjct: 141 TSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 200 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + + ++ + + + Sbjct: 201 YFIPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISVVM 260 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + M + + +++ L+ V Q L T Sbjct: 261 LIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQVQFNSELEKQIELRTE 320 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 321 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 378 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + D + + + E R + +++ + P+ N I Sbjct: 379 YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKN-HISG 435 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F + + S + VM + Sbjct: 436 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEIS-KVPFAVMFL 494 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 495 DLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPDVK 554 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G N Sbjct: 555 KIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 614 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL LA+ E YLVY P I + ++I+G EAL++W HP Sbjct: 615 SSLYTKELYKKMERKARIEKDLPLALVKEEFYLVYQPQIDISTKKIIGAEALLRWKHPLL 674 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+I EF+ I EE + + ++L R + W + I +N+++K+ N Sbjct: 675 GDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQNN 733 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + + +I+ P + L +E + M + + + L +L++ GI +DDFGT S Sbjct: 734 LIKNILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTAIDDFGTGYSS 793 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 794 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 853 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL + +K L++ Sbjct: 854 QKNNCKYMQGYYFSKPLTSHQFIKFLQK 881 >gi|313499909|gb|ADR61275.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida BIRD-1] Length = 1098 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 144/583 (24%), Positives = 264/583 (45%), Gaps = 18/583 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441 T ++ + + S E+ + A S D + + R + + G + Sbjct: 515 SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYS 574 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + G + I +D+ L + + R E R + + + P Sbjct: 575 TDEVIGHTVYEI-GIWADDKQRG--ALLAELRERGRVHHREMLGRNKRGDILTVEVSVEP 631 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 ++ ++ + A D+++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 632 ITL--NEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F ++L Sbjct: 690 -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748 Query: 622 ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 K+ + A +R+ +A P++L + + VT SIG A T +++LK Sbjct: 749 SGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKR 808 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N + F + S+R+ ++ DL LA+ EL L + P + D Sbjct: 809 ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792 IVG E L++W HP G S+F+ + EE +I + ++L+ Sbjct: 869 IVGAEVLLRWHHPLLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 928 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + N+ + + + L +E +V+ N E + + L+ Sbjct: 929 DFSLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMRELK 988 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 + G+S +DDFGT S L+YL +P D +K + S + + I+R+I+ MA++++ Sbjct: 989 RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLD 1048 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + + L R+GC Q + PL ++L Sbjct: 1049 LAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLLEFRQML 1091 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 55/157 (35%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 G+ L + + Q + ER LA+ + WDW I + + Sbjct: 250 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 A + GL H + + +R++ R S G Q +RV+ + Sbjct: 310 ARAAQLHGLPPIPFHESFDAFFEGVPEQERNSMRQAYRSLREGPAGNYQITYRVQLENGT 369 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ R R + G LR G DIT+Q + + Sbjct: 370 SRYIESRARLYRDDQGAPLRMAGTLLDITDQVEREQR 406 Score = 94.2 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + + A+ G+ W WDI RV+ + + G ++L + Sbjct: 22 SEQAWQNAPQLLAALNGARLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 81 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR R + + V R+R D HW+ I + +G IG+ Sbjct: 82 PEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQ-MIGVI 140 Query: 517 NDITEQKK 524 +IT Q++ Sbjct: 141 REITRQRE 148 Score = 45.7 bits (107), Expect = 0.042, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 15/166 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + Q + + E+ + S D + + + P G +S Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSS 450 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + + + + I + + + +I R + Sbjct: 451 AQVLGRTAEEI-GLWAESVERAKRIEQVIREQALSNVAVV--LNHRNGDPLTCVISSRLI 507 Query: 503 SNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539 + + + DIT+Q+++ E AF D +T Sbjct: 508 TVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551 >gi|127511747|ref|YP_001092944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella loihica PV-4] gi|126637042|gb|ABO22685.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella loihica PV-4] Length = 837 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 12/568 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + E + S + V D + + I G + + G R Sbjct: 275 RNITSHKAAQEQLELAANIFENSVEGVVITDASGNIIEVHGAFTEITGYSRDEVLGENPR 334 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 H D+ F + S + G+ E R + + I M + + Sbjct: 335 ILNSGRH--DKAFFERLWRSLLTN--GKWHGEIWNRRKSGAIYPEQLTISSMYGDDHQVR 390 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + DI+ QK+S + + + D LT +PNR L L +A ++ ++ Sbjct: 391 YFVAVFADISAQKQSEKELARLVYHDPLTKLPNRMMLSANLEQELRHAAREE-TELALIF 449 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND G GD +LV + RR+G+ L LARL + F +L + + Sbjct: 450 IDVDLFKHINDSYGHVTGDAILVEVARRLGQKLGEEATLARLGSDEFIAVLPHVESDDSV 509 Query: 631 ADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + +R++ P L + + +TAS+G A + + +L+NA+ AM+ AK G Sbjct: 510 SLMVSRLREAFDAPFLLDDEGSVRLTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGR 569 Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N+ + S + + ++ L A+ YLVY P + L + VG EAL++W+ P Sbjct: 570 NNYAFYTQSLTLASVEHLKLQSALHDAINKDAFYLVYQPKLALGTGQCVGFEALLRWEDP 629 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G IS + F+ +AE + +I I L++L++ A W + I +N+A L Sbjct: 630 QLGTISPAIFIPVAENIGLINEIGLWVLKQAATQGAQWLAEGKRFG-RISVNVAGPQLQQ 688 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + C ++ ++ + P ++L +ES +M +P +L +L ++G+ L++DDFGT Sbjct: 689 KQFCAQVKRVLDEAGLPPEYLELEVTESCMMSDPLAVIEVLKQLGELGVELSVDDFGTGY 748 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL +P +K + S + AI +++I + + IIA+ + Sbjct: 749 SSLNYLKRLPIHKLKIDQSFIRDIPRDGNNTAIAKAVIALGHALNLCIIAEGVETPEQAA 808 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 L GCD Q + P + + L Sbjct: 809 FLEAAGCDQAQGYLYSKPRMVEELAEFL 836 Score = 56.9 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 2/128 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 L + + VW D+ V + G + + + + F Sbjct: 167 LQLFIDSLQEHVWMKDVAGRYVLINHSVEIAWGRSKEQLLNRTDD--EIFSPELAEEFVQ 224 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + E + D W+ P+ + +G + IGI+ +IT K + Sbjct: 225 GDYESIVRGVQVTAAECEAKDIDQSNSWLETTKVPVVSPDGTLEGVIGISRNITSHKAAQ 284 Query: 527 EGILCNAF 534 E + A Sbjct: 285 EQLELAAN 292 >gi|242278952|ref|YP_002991081.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio salexigens DSM 2638] gi|242121846|gb|ACS79542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio salexigens DSM 2638] Length = 1040 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 139/566 (24%), Positives = 269/566 (47%), Gaps = 12/566 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + IF R S + D + V T + G ++ M N Sbjct: 470 AERKIFRHKSRFMQLFESSPQAIALTDSKGNVVDTNRAFNKLFGYSTEEMAPCCEN---- 525 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + + R L +G + E R + + + I P + +I I Sbjct: 526 LSPTNTGKIRANLKKILGGET--YRTEDMRRHKNGRLIPVSILGYPFLYNE-EISGTFII 582 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+++K+ + + D+LTG+PNR FL+RL LD+S V+++DID Sbjct: 583 YDDISQRKEYERRLSYQSLHDSLTGLPNRTFFLERLEETLDMSRKIPERTFAVLMLDIDM 642 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K+IND LG GD++L+ + +RI L+ D +AR+ G+ F +++ + + Sbjct: 643 FKRINDSLGHQAGDELLIEVGKRIKCCLRPVDTVARMGGDEFAVLIEDFSTPQMVIQIIR 702 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 +R I P+++ RE+ +++SIG TSS ++++A+++MY AK +G N + F Sbjct: 703 DIRNEIRKPMSISSREVVISSSIGIVFKTSSYEHPEHIIRDADISMYKAKEQGVNKFKVF 762 Query: 696 RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + ++I+ ++ + +E + + P+ + + + G EAL++W+HP+ G ++ Sbjct: 763 NKTMHEKALQSLLIETEIRQGIPENEFFPYFQPVYSMQNRNLAGFEALVRWNHPERGFLT 822 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCE 812 + + +AEE +I ++ +L R + +W +F+ +N++ L +L E Sbjct: 823 PDQIIPVAEETGLIVELDRIILFEACRFMSAWIRLYPNANDLFLTVNLSPSQLSKPDLAE 882 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ ++ +T +KL +ES +M S L L ++ ++GI L +DDFGT S L+ Sbjct: 883 AIETIVQETKIPADNLKLEITESAIMERNAASSLNLKKIGEMGIRLAVDDFGTGYSSLAQ 942 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P TVK + S ++ + + I+R++ + ++ +IA+ + + L + Sbjct: 943 LQRFPASTVKIDRSFVSHMASDHESLEIVRAVNALGHSLSMDVIAEGVETREQLILLKDI 1002 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GCDY+Q + P KL+K R Sbjct: 1003 GCDYVQGYYFDKPQTNEDAEKLVKMR 1028 Score = 63.0 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 48/160 (30%), Gaps = 9/160 (5%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 +++ + L + + ++ + ++ P +A I+ Sbjct: 326 LMVAISEQVAAALLRRQAEEALLESEKKFRSIFENATVAIFQISAAGRVTVANPALAAIM 385 Query: 439 GLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G M +++ + + + L + RV + + W+ + Sbjct: 386 GYDNVDEMLAENDLASRFLY--NHEGRQKFLKRLLTDGAVNGML-LRVNHRNGKEKWVTV 442 Query: 498 RIRPMSNSNGDILRYIGIANDIT-----EQKKSLEGILCN 532 R +S G+ + Y G A D T E+K Sbjct: 443 NARTSYDSRGNPVLYTGTAFDSTLEIVAERKIFRHKSRFM 482 Score = 43.0 bits (100), Expect = 0.22, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 12/135 (8%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH----INDRDNF 464 + D + + V P + + + ++ G + IH D Sbjct: 52 ILHFIPDPAFIINKEGVIVAWNPALEQLTNTKAENVIGNGNFEHINLIHGKRTPGLIDLV 111 Query: 465 R------TILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 I + R L E ++ + + + ++ P+ ++NG + I Sbjct: 112 NGCDEIGEIEYGAISRRGRALAAEICIQDLGNRKSTNLWVQAAPILDANGKTIGAIESLR 171 Query: 518 DITEQKKSLEGILCN 532 DI+ +K++ L Sbjct: 172 DISARKQTENINLIL 186 >gi|56752384|ref|YP_173085.1| hypothetical protein syc2375_d [Synechococcus elongatus PCC 6301] gi|56687343|dbj|BAD80565.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 1238 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 151/623 (24%), Positives = 272/623 (43%), Gaps = 17/623 (2%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFS 402 + I + + Q ++ ++ + + A G I + Sbjct: 615 MASLSGAIANGFSTWSEQYRFLRQDGTYAHVLDRGYIVRDENGRAIRAVGAMQDISAIVA 674 Query: 403 DGERQSL---AVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 E+ L A+ +G+ + D + P I G ++ + G +L + Sbjct: 675 ANEQLRLWLRAIESTGNSIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGL 734 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + + + + R D W I + P+ + G + + Sbjct: 735 --ETQQAELEEMRRALEE-GTYCEVTLRSYRKDGSLFWNQISLAPVRDQKGHLTHMVASQ 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D++E K E +L A D LTG+PNR FLDRL + V+ ID+D + Sbjct: 792 TDVSESKAFEEMLLQQATHDALTGLPNRLLFLDRLDQAAARA-RGGGSPIAVLFIDLDNF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND + GD VL R+ + ++ + +ARLS + F I+L + K A Sbjct: 851 KAINDGFSHSEGDAVLQIAAGRLQQCIQEHETVARLSSDEFVILLTDLDVQSKARVKAAM 910 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 ++ +A P ++ I +TASIG A++ + SE+L+ A+LA+ AK +G N SF Sbjct: 911 IQSLMAKPFEVMGNPIELTASIGVATFPHDGQSGSELLQAADLAVCAAKQQGKNLWCSFS 970 Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R+ I++DL A+ ++ L L + P + L+ ++G E L++W+HP+ G ++ Sbjct: 971 EAMREQLRSRIDIEKDLRQALIDNSLELYFQPQVDLVTHRLLGFETLVRWNHPERGLVAP 1030 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ IAEE +I AI L+++ + W D + NI+++ + + + Sbjct: 1031 GEFIPIAEESDLIDAIGLWVMRAAGLTLRRWIDHEGFTG-SLSFNISARQFIRQNIFLKL 1089 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ + P ++++ +ES ++ +PER L R +G + LDDFGT S L YL Sbjct: 1090 FDVLQEFQIPPHQLEIELTESSLIESPERFVQWLQEARSMGFQVALDDFGTGYSSLGYLK 1149 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P + +K + S + AI+++I+ MAK ++ IA+ + L +GC Sbjct: 1150 RLPINALKIDRSFIRDLPHDHDDQAIVQAIVAMAKVLKLRTIAEGVERLEQAAFLEAIGC 1209 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 D +Q PL L L Sbjct: 1210 DAVQGFFYGPPLPEAEALAFLHR 1232 Score = 99.3 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 5/149 (3%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + Q + ER L + D VWD +++ + + + + + + G + Sbjct: 532 FRDISDRVMSRQLLEEMAERFQLVTRATNDAVWDRNLLTNEIWYSANYSRLFGGEEKEIT 591 Query: 447 GPI-----RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + W + + R+ L + ++R D + ++ R Sbjct: 592 QKLVQTVDLQWRDRLDPDQRERIMASLSGAIANGFSTWSEQYRFLRQDGTYAHVLDRGYI 651 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 + + NG +R +G DI+ + E + Sbjct: 652 VRDENGRAIRAVGAMQDISAIVAANEQLR 680 Score = 48.0 bits (113), Expect = 0.008, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 1/101 (0%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W+ D+ V T+P + +LG S + WL + ++DR +D+ + R Sbjct: 199 GYWELDVQSQLVQTSPLVNRLLGKPSDQCLFSWQQWLEHFQLSDRLRLEQAIDTGMQTGR 258 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +Q + + + + +R + + G++ G+ Sbjct: 259 -PIQATYALASDSQDRQLVELRAVIVRDLAGNVRSLRGVLE 298 >gi|126173574|ref|YP_001049723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS155] gi|125996779|gb|ABN60854.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS155] Length = 1015 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 149/568 (26%), Positives = 262/568 (46%), Gaps = 10/568 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T + + G + L Y +N Sbjct: 452 IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYREFEVRDQHIRLL-YCDLN 510 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 RD + + + +G+ Q E R + + + + + I +++ G R + + +DI Sbjct: 511 GRDFYTQMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K++ I A D LTG+PNR+ L+ L++ + + + N ++ +D+D +K++ Sbjct: 569 TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ R+ ++ D++ARL G+ F ++L S + I A + + Sbjct: 628 NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENILR 687 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 688 RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ L E+ EALI+W H + G +S +EF Sbjct: 748 QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR +WR + + I I +N + D L Sbjct: 808 IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 867 LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 927 DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962 Q + P+ + + PLV Sbjct: 987 GQGYLFSRPVPAAEFTQKYLQDPPLVSR 1014 Score = 110 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 2/159 (1%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 L+ + + Q + + E+ L + S VWDWDI DR+ A ILG Sbjct: 306 ALLVIAGYLDITSQALADQEVLASREQLELVLSSSDLGVWDWDIRHDRIERNARSADILG 365 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 ++ R W+ I DR +++ + + + E+R+ + + W++ Sbjct: 366 CDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTLNRKVRWILDTG 425 Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + + ++N + LR G DIT+ K E + +A D Sbjct: 426 KVVSRDANDNALRMCGTYTDITDAKLIEESLKLSALVYD 464 Score = 81.5 bits (200), Expect = 6e-13, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 74/273 (27%), Gaps = 10/273 (3%) Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 + + + F G+ + + Y + + I + IV +I+ Sbjct: 65 FFDTRSVILCISGLFFGGLPTFIAVVMTALYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386 + A + L + + L N I P L + ++ + Sbjct: 125 RKSYLANISGREIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184 Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q D + I + + P + +L + + Sbjct: 185 LLSRRFELERDEQIRLQDDFLFRSQFNVGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 W H +D ++ + + + + R D + + + Sbjct: 245 L--RMTWAQITHPDDLESDALKFELMLRGEIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + L I DIT Q +L A ++ L Sbjct: 303 SNTALLVIAGYLDITSQ--ALADQEVLASREQL 333 >gi|313202388|ref|YP_004041046.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441704|gb|ADQ85810.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 1150 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 143/578 (24%), Positives = 262/578 (45%), Gaps = 13/578 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 IQ ++ + E LA S + + D + +T P + + G + Sbjct: 575 TIQGIIISSENISARKQAEEELRLAHTVFEHSSEAMLVTDADNNIITINPAFSEMTGYSL 634 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G L ++ ++ + ++ G + E R + + + I + Sbjct: 635 EEVIGKNPKILSS-GRQGKEFYQELWNTL--ETSGEWRGEIWNRRKSGEEYAEWLAINNI 691 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +G + R + + +DITE+K++ I A D LT +PNR+ F DRL + S D Sbjct: 692 YGEDGKLFRRVALFSDITEKKRADALIWNQANYDLLTQLPNRRLFSDRLQQEIKKSQ-HD 750 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + + ++ ID+D++K++ND LG + GD +L+ + RI LK D + RL G+ F +I+ Sbjct: 751 HSQFALLFIDLDRFKEVNDTLGHSHGDYLLIEASHRIQRHLKETDTVGRLGGDEFTVIIA 810 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + A + ++A P +L + ++ASIG + TS+E+LKNA+ AMY Sbjct: 811 NLPDPSVMTLIAQRVLDALAAPYDLEGEIVYLSASIGITVFPEDATTSAELLKNADQAMY 870 Query: 683 HAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N F + + + DL A+ ++ + + PI+ L + I EA Sbjct: 871 EAKKNGRNRFSFFTPMMQAMAQARMRMMRDLRNALGLNQFTVYFQPIVDLSSQRIYKAEA 930 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G IS +EF+ +AEE +I I ++ ++ A+ + + +N Sbjct: 931 LIRWQHPELGFISPAEFIPLAEETGLIHEIGDWVFQQSAQLVKQCIPIVGD-DFQVSVNK 989 Query: 801 ASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 + D +S S I + +E +++ L R G+ + Sbjct: 990 SPVQFRDRAHSHHDWMEYLSGLGLSGHNIVVEITEGLLLNADSGISDKLLHFRDAGMQVA 1049 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL D +K + S + + + +A+ +I MA ++ +IA+ Sbjct: 1050 IDDFGTGYSSLSYLKKFDIDYLKIDQSFVRNLSGEGEDLALCEAIATMAHKLDLRVIAEG 1109 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L ++GCDY Q + P+ + + LL+ Sbjct: 1110 VETTAQRDLLAQIGCDYGQGYLFSRPVPADEFMLLLER 1147 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 3/175 (1%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L +G L L+ ++ + + + + + +R + G+ W+ Sbjct: 301 LLPYSRYIAPALGLLSLVGAIVLLWIFLLRRSVKTKTAELANQHQRLQQIIDGTAAGTWE 360 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 WDI P A +LG + + H +D + L++ + Sbjct: 361 WDIRSGDCIVNPRWAEMLGYTPDELEPCTADSCRALCHPDDLEQLVQALEAHLRGETDYF 420 Query: 480 QYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 E R R + + W+ R R +S G+ L G +IT+ K + E L A Sbjct: 421 ASESRRRHKNGHWIWVADRGRVTRRSSQGEALTMSGTRLEITKLKLA-ETTLKQA 474 Score = 69.2 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 5/140 (3%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + E+Q + + + V +D + + G GS+ G Sbjct: 467 AETTLKQAVEQQKMFIQQAPICVAMFDRDMRYLACSNQWQEEFGHQQGSLLGLNHYD--- 523 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 +H + + +R + R + + +R AD Q W I P + + I I Sbjct: 524 VHPDIPEKWRLAHQRALAGERLEEEEDLWIR-ADGQHLWTRWMITPWMDDSQTIQGIIIS 582 Query: 516 ANDITEQKKSLEGILCNAFQ 535 + +I+ +K++ E + A Sbjct: 583 SENISARKQAEEELR-LAHT 601 >gi|291613650|ref|YP_003523807.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291583762|gb|ADE11420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 912 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 142/570 (24%), Positives = 241/570 (42%), Gaps = 14/570 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + + + S + + D + P I G A + G Sbjct: 341 FDREVQRKAAEQSLQLAASIYENSSEGMMITDADNLIMAINPAFTRITGYAMEDVIGKNP 400 Query: 451 NWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L H D D ++ + + + G+ E R + + + I + N +G + Sbjct: 401 GILKSGRH--DMDFYQAMWNEIL--GTGKWIGEIWDRRKSGEVYPKWLTINTVFNDDGKV 456 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 I + DI+++K+S E I A D+LTG+PN + F DRL + S + L V+ Sbjct: 457 HHRIALFTDISQKKESEELIWRQANFDHLTGLPNWRMFHDRLEQEIKKSRRVE-LPLAVV 515 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +K++ND +G A GD +L R+ ++ D +ARL G+ F ++L ++ Sbjct: 516 FLDLDHFKEVNDTMGHATGDLLLKEAALRLSSCVRESDTVARLGGDEFALLLGELSDQDS 575 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 I + + P L ++ SIG + S +L+NA+ AMY AK+ G Sbjct: 576 IERVNECILNKFSAPFQLGNELAYISVSIGVTIYPSDATEIEALLRNADQAMYAAKNSGR 635 Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + + +R+ + DL A+ + LVY PI+ L I EALI+W HP Sbjct: 636 NRSCYYTQAMQSVAQNRMSLSNDLHKALAQDQFRLVYQPIVELETGSIHKAEALIRWQHP 695 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G +S ++F+ IAE+ +I I ++ + A + WR I I IN + Sbjct: 696 NRGLVSPADFIPIAEQSGLIIQIGDWVFRQAANQVKHWRGAYGK-DIQISINKSPVQFKS 754 Query: 808 NE--LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + + + S + +ES++M + L IG+ + LDDFGT Sbjct: 755 DSNTHLAWFEH-LKELDLSGGCFAIEITESLLMDASDTIVSKLMAFGNIGMQVALDDFGT 813 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL D +K + S + +A+ ++I MA + +IA+ + Sbjct: 814 GYSSLSYLKKFDIDYIKIDQSFVRNLAPDSSDLALCEAMIMMAHKLGIKVIAEGVETSEQ 873 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L GCDY Q + PL L+ Sbjct: 874 RDLLRTAGCDYGQGYLFSRPLSTEDFEGLV 903 >gi|217974179|ref|YP_002358930.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217499314|gb|ACK47507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS223] Length = 1015 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 149/568 (26%), Positives = 262/568 (46%), Gaps = 10/568 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T + + G + L Y +N Sbjct: 452 IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYREFEVRDQHIRLL-YCDLN 510 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 RD + + + +G+ Q E R + + + + + I +++ G R + + +DI Sbjct: 511 GRDFYTKMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K++ I A D LTG+PNR+ L+ L++ + + + N ++ +D+D +K++ Sbjct: 569 TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ R+ ++ D++ARL G+ F ++L S + I A + + Sbjct: 628 NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENILR 687 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 688 RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ L E+ EALI+W H + G +S +EF Sbjct: 748 QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR +WR + + I I +N + D L Sbjct: 808 IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 867 LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 927 DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962 Q + P+ + + PLV Sbjct: 987 GQGYLFSRPVPAAEFTQKYLQDPPLVSR 1014 Score = 111 bits (279), Expect = 5e-22, Method: Composition-based stats. Identities = 64/410 (15%), Positives = 134/410 (32%), Gaps = 50/410 (12%) Query: 174 YLWEPNFYKDTVNSFTLYRGIIIG-VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232 ++++P + DT + G+ G + + +A+ +T+ Y R S+ + V+ Sbjct: 58 WIYQPGVFFDTRSVILCISGLFFGGLPTFIAVVMTVLY---RISIGGAGMWIGVGVIVSS 114 Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292 + + + +++ F++L + +T + Sbjct: 115 GLIGVIWRQYRKSYLANISGREIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTI 174 Query: 293 IAILFCMSFYYPMVTASIARI------------TLASIVLYYTYFIIY-----------H 329 I + + R + + Sbjct: 175 FPIATWLLSRLLSRRFELERDEQIRLQDDFLFRSQFNAGNIGIAITGIDQKWIKVNPRLC 234 Query: 330 GMKGYERAVLLIPAWIL------IFIWFIGLWMAITKRLDND------IIQPALVGGLVL 377 M Y A LL W + + + + +DN I++ V + Sbjct: 235 QMLKYSEAELLRMTWAQITHPDDLETDALKFELMLQGDIDNYEMDKRFIVKDGSVVYTHM 294 Query: 378 IVI---------LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 V L+ + A + Q + + E+ L + S VWDWDI DR+ Sbjct: 295 TVACKRGGNNAVLLVIAGYLDITAQAFADQEVLASREQLELVLSSSDLGVWDWDIRHDRI 354 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 A ILG ++ R W+ I DR +++ + + + E+R+ Sbjct: 355 ERNARSADILGCDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTL 414 Query: 489 DNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + + W++ + + ++N + LR G DIT+ K E + +A D Sbjct: 415 NRKVRWILDTGKVVSRDANDNALRMCGTYTDITDAKLIEESLKLSALVYD 464 Score = 86.5 bits (213), Expect = 2e-14, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 72/273 (26%), Gaps = 10/273 (3%) Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 + + + F G+ + Y + + I + IV +I+ Sbjct: 65 FFDTRSVILCISGLFFGGLPTFIAVVMTVLYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386 + A + L + + L N I P L + ++ + Sbjct: 125 RKSYLANISGREIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184 Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q D + I + + P + +L + + Sbjct: 185 LLSRRFELERDEQIRLQDDFLFRSQFNAGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 W H +D + + + + + R D + + + Sbjct: 245 L--RMTWAQITHPDDLETDALKFELMLQGDIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 N +L I DIT Q + A ++ L Sbjct: 303 NNAVLLVIAGYLDITAQ--AFADQEVLASREQL 333 >gi|167032524|ref|YP_001667755.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166859012|gb|ABY97419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 1098 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 143/583 (24%), Positives = 267/583 (45%), Gaps = 18/583 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441 T ++ + + S E+ + A S D + + R + + G + Sbjct: 515 SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEINDGFCRLTGYS 574 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + G + I +D+ + L + + R E R + + + P Sbjct: 575 AAEVVGHTVYEI-GIWADDKQR--SALLAELRERGRVHHREMLGRNKRGDILTVEVSVEP 631 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 ++ ++ + A D+++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 632 ITL--NEVDCLLLNARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F ++L Sbjct: 690 -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748 Query: 622 ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 K+ + A +R+ +A P++L + + VT SIG A T +++LK Sbjct: 749 SGLEGSRELVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKR 808 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N + F + S+R+ ++ DL LA+ EL L + P + D Sbjct: 809 ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792 IVG E L++W HP+ G ++F+ + EE +I + ++L+ Sbjct: 869 IVGAEVLLRWHHPQLGQQPPAQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 928 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + N+ + + +KL +E +V+ N E + + L+ Sbjct: 929 DFSLCVNISPRQFRQNDFVGRVLRSLDDYRLPRHMLKLEITEGIVIQNLEDTISKMRELK 988 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 + G+S +DDFGT S L+YL +P D +K + + + I+R+I+ MA++++ Sbjct: 989 RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQTFVRDAPIDPNDAEIVRAIVAMARSLD 1048 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + ++ L R+GC Q + PL ++L Sbjct: 1049 LAVIAEGVELTEQLEFLERLGCHLYQGYLHSRPLPLPEFRQML 1091 Score = 108 bits (271), Expect = 4e-21, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 55/157 (35%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 G+ L + + Q + ER LA+ + WDW I + + Sbjct: 250 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 A + GL H + + +R++ R S G Q +RV+ Sbjct: 310 ARAAQLHGLPPIPFHESFDAFFEGVPEQERNSMRQAYRSLREGPAGNYQITYRVQLESGI 369 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ R R + G+ LR G DIT+Q + + Sbjct: 370 SRYIESRARLYRDEQGNPLRMAGTLLDITDQVEREQR 406 Score = 94.2 bits (233), Expect = 1e-16, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + + A+ G+ W WDI RV+ + + G ++L + Sbjct: 22 SEQAWQNAPQLLAALNGARLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 81 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR R + + R+R D HW+ I + G IG+ Sbjct: 82 PEEDRARTRQVFQAVFNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPQGRPQ-MIGVI 140 Query: 517 NDITEQKK 524 +IT Q++ Sbjct: 141 REITRQRE 148 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 23/178 (12%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442 VI+ + + + +R + S + + + + G Sbjct: 137 IGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRHDGMIFEVNQHFEDMFGWPG 196 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G L ++ R + G L E + RA + H I+ + Sbjct: 197 SQVIGKTSLELGLWVNPEQRHQVMESTRA----NGGPLIMEVQFRATSGKVHDGILCTQG 252 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I D TE+K++ A +D+ +RL LD + Sbjct: 253 IELEG--VTFLISTFVDTTERKRAE-----QALKDS----------QERLDLALDSAQ 293 Score = 43.8 bits (102), Expect = 0.14, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 46/170 (27%), Gaps = 23/170 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + Q + + E+ + S D + + + P G Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWNG 450 Query: 443 GSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G W I + + I + V + +I Sbjct: 451 EQVLGRTAEEIGLWAESI-----ERAQRIERVIREQALSNVAVV--VNHRNGAPLTCVIS 503 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539 R ++ + + DIT+Q+++ E AF D +T Sbjct: 504 SRLITVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551 >gi|327478848|gb|AEA82158.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 943 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 136/563 (24%), Positives = 266/563 (47%), Gaps = 12/563 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + S E+Q LA + + + + + T+ G + + G + Sbjct: 386 ELRSQAEQQRLAATVFEAASEGIVIMNDRYRVLAVNDACCTLSGYSREELLGHSVARIAG 445 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + + R G Q E + + +++R + ++NG + + Sbjct: 446 -SPES-QRQYETMREALE-RHGHWQGELIETRKSGEVYPQWVQLREVRDANGSVTHVVAF 502 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D++ ++K E + D+LTG+ NR +RL + V+ ID+D+ Sbjct: 503 VSDLSVRRKIEERLRYLTHYDDLTGLANRGLLKERLQEACQRVRRNGR-NMAVLYIDLDR 561 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +N+ LG D +L ++RR+ + L D +ARLSG+ F ++L + + +A Sbjct: 562 FKLLNESLGHEAADALLREVSRRLSQTLGEADTIARLSGDEFVVLLDAYGSLSGLAHLGS 621 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + I PI + E+E+ ++ASIG + + + +L+ A AM AKH GGN ++ F Sbjct: 622 RLLQRIRKPIVIGEQELVISASIGVSLLPDNSRDAEVLLRQASTAMQQAKHLGGNTLQFF 681 Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + ++ L A+E +L + Y P + L D+ + EAL++W HP+ G ++ Sbjct: 682 TDRPQASGMHYLQLENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPQRGLVT 741 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 ++F+ +AEE +I + F+L R W+ + I + +N++ K L Sbjct: 742 PADFIPLAEETGLIIPLGEFVLREACRQARRWQQEGLA-DIRVSVNLSVKQLRQGNFVSL 800 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ ++ +T P+ ++L +ES ++ + + + + +LR +G+ L +DDFGT S LSYL Sbjct: 801 VRQVLEETGLPPAMLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYL 860 Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P D VK + S ++ + + AI R+II M ++E ++A+ + + + L Sbjct: 861 KRFPVDYVKIDRSFISEVEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANL 920 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 CD IQ ++ P+ +LL+ Sbjct: 921 CDEIQGYLLSPPVPAEQFAELLR 943 Score = 118 bits (295), Expect = 7e-24, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 100/275 (36%), Gaps = 27/275 (9%) Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG----MKGYERAVLL 340 +T + + + ++ + A + A L ++ +G+ ++ Sbjct: 127 VTQALLYGLMGSVVLAASVAYGVSLPAFFSFAVPCLLPAGLLLMTSGEPLQQGWGVLAMI 186 Query: 341 IPAWILIFIWFI--GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 + A + + W I + +I +RL + L +L G + V + Q Sbjct: 187 VLATLSLIAWQISRLVTDSIEQRLHRQRLIERLEKAGREADLLNG-RLATEVEQRRHAEQ 245 Query: 399 GIFS------------------DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + S R +LA+ S +WDWD+ +RV + + + G+ Sbjct: 246 QLRSAYDGLEQRVAERTAELGESEARLTLALEASDLGLWDWDLQNNRVHHS-RMQVVFGI 304 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + +G + LP IH +D R L + + E+R AD + R R Sbjct: 305 GLENRYGKDGSRLPDIHPDDLQRVRATLIAHLKGETESFVIEYRALCADGSELCLEDRGR 364 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + ++NG LR IG DI+E + E A Sbjct: 365 VIQRDANGRALRMIGTRRDISELRSQAEQQRLAAT 399 >gi|170724151|ref|YP_001751839.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] gi|169762154|gb|ACA75470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida W619] Length = 631 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 151/623 (24%), Positives = 285/623 (45%), Gaps = 15/623 (2%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI-VILIGFTVIQHVLATGY 395 A+ L+ + + + + + L L + + V VL LI FT + + G Sbjct: 13 ALYLVLSILWLVLSEVVLRSMSEDPLALAVGRQINVVLWVLSSAALIFFTRARLLNFIGV 72 Query: 396 FSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451 ++ D R +A + + V D V I G + G Sbjct: 73 GARLRSEDRARLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVLGQRPSK 132 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + H D ++ I + +G E R + + IR + + G++ Sbjct: 133 FKSGRH--DVPFYQQIYATLAE--KGEWSGEIWNRRKSGEIYPQWQTIRAIHDDGGEMTH 188 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ + +DI+ K + + + A D LTG+PNR F DR L + + ++++ Sbjct: 189 YVAVFSDISAIKHTEQELAYLAHHDPLTGLPNRLLFSDRAEQALASAQANKRG-CALLLL 247 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D ++ IND LG +GD +L + R+ E++ LARL G+ FG++ + + Sbjct: 248 DLDHFQSINDGLGHTIGDQLLKLVGERLAEVVGNGVTLARLGGDEFGVLAENCQQVGQAG 307 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A A+ + + P + + ++ S+G + + S +++ ++L+NA+ A++ AKH G Sbjct: 308 KLAQALIERMREPFDFDGHRLFISVSVGISLFPSDALSAEQLLRNADSALFKAKHNGRAC 367 Query: 692 VESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + ++ +L A+ EL + Y P+ L ++VG+EAL++W HP+ Sbjct: 368 YALYTEELTAHAQHRVETAGELRRALAQDELRVFYQPVFHLFTSKMVGVEALVRWQHPQR 427 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + SEF+ IAE +I I+ ++L R ++SW+ + F+ +NI+S+ E Sbjct: 428 GLVPPSEFIPIAERTGLIADIDAWVLREACRQMVSWQADGRLLE-FVAVNISSRLFGQRE 486 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ +T PS +++ +ES VM +PE + L RLR++G++L +DDFGT S Sbjct: 487 LYRQVAGVLHETGLDPSLLEVEVTESAVMEDPEVALEQLHRLRELGLNLAIDDFGTGYSS 546 Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L L +P +K + + G + +AI+R II +A+++ + A+ I + L Sbjct: 547 LLRLKRLPVQKLKIDQGFVAGLPMDDDDVAIVRVIIALARSMGMQVHAEGIEQPEQARFL 606 Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950 C Q P+ + Sbjct: 607 LEQQCQLGQGYWFGRPVPAEGLR 629 >gi|288961804|ref|YP_003452114.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510] gi|288914084|dbj|BAI75570.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510] Length = 701 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 135/565 (23%), Positives = 242/565 (42%), Gaps = 14/565 (2%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E+ L D + D P + G + Sbjct: 138 ERKQHEEKIRLLATVFDSVADGILIVDPELTVQAINPAYEIMTGFQREELLRRPLVLFA- 196 Query: 456 IHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + F + + GR Q E + + + NG + Y+ Sbjct: 197 --PGSHERDFIDAIWTTARQ-SGRWQGEVTSFRHSGDAFAAALSVTSVRAPNGVLEHYVL 253 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 DI+++K I A D LT +PNR +RL + + + V +D++ Sbjct: 254 TIADISQRKSQEHQIRYQASFDRLTDLPNRWLVCERLEEAIIRAQR-GKSKVAVAFLDLN 312 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K++ND LG GD++L + RR+ + D + RL G+ F I+ + A Sbjct: 313 RFKQVNDTLGHHAGDELLKLVARRMRNCTRMTDTVGRLGGDEFLIVAPDAADRSAGARLV 372 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHV 692 + S++ P ++ +E+ ASIG A + T+ ++L+NA+LAMYHAK Sbjct: 373 EKVLYSMSEPFSVHNQELFCGASIGIAFYPDDGDTADQLLRNADLAMYHAKRNPEHKYVF 432 Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + ++ DL A E L + P I L +G EALI+W HP G + Sbjct: 433 YDSGMRERSGFTLGLESDLRRASGGDEFELHFQPKIDLAGNITIGAEALIRWRHPVRGMV 492 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S +EF+ +AEE MI I + L R + W ++ P + +N++ + D L Sbjct: 493 SPAEFIPLAEETGMIWEIGAWTLIESCRRLADWIERGLPIP-SVSVNLSPRQFQDARLVG 551 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 +++++ R++L +E ++G+ E++ +L L+ IG+ L++DDFGT S L+Y Sbjct: 552 FVRSVVEAAGIPAERLELELTEGAMIGDIEKAVTILNGLKDIGVRLSIDDFGTGYSSLAY 611 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P DT+K + S + + AI+ +I+ +A+++ IA+ + + L + Sbjct: 612 LKRFPIDTLKIDRSFVRDIVKSTTDPAIVGTIVNLAESLGFDTIAEGVETHEQAEMLRQQ 671 Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955 C IQ ++ PL + L+ Sbjct: 672 RCTRIQGYLISRPLPVDQFEAFLRN 696 Score = 93.9 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 4/139 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHIND 460 E+ + + ++ + + P +A I G + + + + ++++ Sbjct: 20 ETEEQYRSIFENAVEGIYQTTVDGRYLRVNPALAEIYGYASPEDLIANLTDIACQLYVD- 78 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R + + L +E RV D W+ R + + G I Y G DIT Sbjct: 79 -PGKREAFADLMARQDRVLSFEARVFRRDGSIIWISESARCVRDPAGRIRYYEGTVQDIT 137 Query: 521 EQKKSLEGILCNAF-QDNL 538 E+K+ E I A D++ Sbjct: 138 ERKQHEEKIRLLATVFDSV 156 >gi|89901044|ref|YP_523515.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89345781|gb|ABD69984.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 853 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 144/588 (24%), Positives = 273/588 (46%), Gaps = 16/588 (2%) Query: 382 IGFTVIQHVLATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + ++ L + + E+ + S + + + +P G Sbjct: 263 LELARLRFSLEQLVAQRTALLNKSEEKYRILADYSPNWEYWMAPDGSYLYVSPACVHESG 322 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHWMII 497 A IH +D + + + G + FR++A D W+ Sbjct: 323 YAPQDFFDNAELMDTIIHPDD----LSAWNKYGPAAAGTVSEPLIFRIKAKDGGERWIEH 378 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + +++G L G DI+++ ++ + + +D LTG+PNR F + L L Sbjct: 379 VSNRVLDTSGRSLGQRGSHRDISKRHETEQRLDFYINRDPLTGLPNRVLFREFLGRTLQR 438 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + D + + ++++++D + +N LG + GD +L+ ++R+ LL D +AR+SG+ F Sbjct: 439 AERDQS-QFALLIVNLDNFNSVNQSLGHSQGDQLLIEASKRLRTLLPDLDAVARISGDEF 497 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 IIL N+ I A M ++ +P NL + + V ASIG + + S + NA Sbjct: 498 NIILNQGENAPPIDLVAQRMIDALGIPFNLNDSSVYVGASIGISMYPSDGRDVETLQSNA 557 Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 A++ AK RG + F + R+ ++ L +VE EL L Y P + L+ EI Sbjct: 558 AAALHQAKSRGRGMLRFFSMEMMGRSKARLTLEAALRQSVERDELRLYYQPQVDLISGEI 617 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG+EAL++W H + G I +EF+ +AEE + + ++L R I W P+ Sbjct: 618 VGVEALVRWQHAERGLIPPNEFIPLAEESGYVVTLGDWVLRTACRQIKQW--AGLGLPLR 675 Query: 796 -ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N+++ L +L E ++ + +T +P ++L +ES VM + ERS L L+ + Sbjct: 676 QVAVNVSAVQLSRGKLVESVKDALQETGIAPGMLELEITESSVMLDRERSLETLASLKAL 735 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ L++DDFGT S L+YL + D +K + + + AI++++I + ++ Sbjct: 736 GVQLSIDDFGTGYSSLAYLQQLEVDKLKIDIAFVRDMTTNSNNAAIVKAVIALGHSLGLE 795 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 II + + + L + CD +Q V+ P+ + + ++ P+V Sbjct: 796 IIGEGVETADQARHLRTLRCDIMQGYMVSRPIPGAEMTQFMRTFKPVV 843 >gi|117921369|ref|YP_870561.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] gi|117613701|gb|ABK49155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] Length = 1009 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 149/556 (26%), Positives = 255/556 (45%), Gaps = 10/556 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T I G + + G L Y +N Sbjct: 451 IEESLKLSALVYDNSSEAMSVLDETGVIITVNAAFTAITGYSESEIRGQHIRLL-YCDLN 509 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + +G Q E R R +N+ + + + I + + +G R + + +DI Sbjct: 510 GHGFYTEMNNEIRE--KGEWQGEMRQRRKNNEEYVIWLTINTIKDKDGQPYRRVALFSDI 567 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K+S I A D LTG+PNR+ L+ L + + + N +M +D+D +K++ Sbjct: 568 TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKSADRNRN-HFALMFLDLDYFKEV 626 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ R+ ++ D++ARL G+ F ++L S + I A + + Sbjct: 627 NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMVDHKGIERVAEHILR 686 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 687 RIAEPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV + E L Y PI+ + E++ EAL++W HP+ G +S +EF Sbjct: 747 QEYAKYRMRLIQDLRQAVVSKEFELHYQPIVTMTTGEVLKAEALLRWFHPERGYVSPAEF 806 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR WR I I +N + D L Sbjct: 807 IPVAEDTGLIVEIGNWVFEQAARQSALWRKTFG-VDIQISVNKSPIQFRDEGTLLHNWLE 865 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ K + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 866 LLQKLDVTGTGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 926 DIDYLKIDQSFTRNIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLTAGCDY 985 Query: 935 IQDSHVASPLGFNSIL 950 Q + P+ Sbjct: 986 GQGYLFSKPVSATEFA 1001 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 2/158 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ V A + + + E+ L + S VWDWDI D + A ILG Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNARSADILGC 365 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ R W+ I DR +++ + + + E+R++ + W++ + Sbjct: 366 DIDMLNANSRQWMDSIVAEDRPKVLHSIEAHIRGETLQHKMEYRLKTLNRDIRWILDTGK 425 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + ++N + LR G DITE K E + +A D Sbjct: 426 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 463 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 36/318 (11%), Positives = 93/318 (29%), Gaps = 12/318 (3%) Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYIT 286 V Y +I + L + + + + S+ ++ V + Sbjct: 20 VFLYDAIPKKHQRQYFLLWRLGIGLLIGGIGVTIMSTPWMYEPGIIFDTRSVLLCVTGLF 79 Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 F G+ + + Y + + + L I+ +I+ + A + Sbjct: 80 FGGLPTAIAVVMTAIYRISIGGAAMWVGLGVIISSGLIGVIWRQQRKSYLANISGREIFS 139 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL------IGFTVIQHVLATGYFSQGI 400 + + L + + P L ++ ++ + + ++ Q Sbjct: 140 FAFVVHIVMLLWFFLLPDKVAIPVLQKIMLPVLTIYPLATWLLSRLLSRRFELERDEQIR 199 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 D + + + + P + +L + + W H +D Sbjct: 200 LQDDFLFRSQFNVGNIGIAITGVDQKWIKVNPRLCQMLKYSEDELLH--MTWKQLTHPDD 257 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + + + + + R A DN + + + +N +L I D+T Sbjct: 258 VEADIVKFELMLAGKIDNYEMDKRFIAKDNSIVYTHMTVAC-KRANHQVLLVIAGYLDVT 316 Query: 521 EQKKSLEGILCNAFQDNL 538 Q +L A ++ L Sbjct: 317 AQ--TLADREVLASREQL 332 >gi|289677665|ref|ZP_06498555.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 639 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 148/624 (23%), Positives = 277/624 (44%), Gaps = 19/624 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394 + + + + L + + Q + G VL+ ++ F + A Sbjct: 14 LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWVLLSTVMIFIARDRLKAIVGGE 73 Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + D +R LA + + V D V I G + + G Sbjct: 74 ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133 Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + H L S G+ E R + + IR + +G Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQA 188 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ + +DIT K+S + + A D LT +PNR DR++ L + ++ Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALL 247 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 V+D+D ++ IND LG +GD+VL + R+ L +ARL G+ F +++ + + + Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLKALADSGMTVARLGGDEFALLVKNCKHMVH 307 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A A + + P + ++ V+ASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVSASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 367 Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + + RV + +L A+E +L + Y P+ L+ I +EAL++W HP Sbjct: 368 EGFALYTEELTAQAQQRVQLASELRQAIEQDQLRVFYQPVYDLVTGRICAVEALVRWQHP 427 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G +S +F+ IAE+ +I I+ ++L R + +W + + +N++S+ Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 486 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ + ++++T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT Sbjct: 487 GDVDRRVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L L +P +K + + G IAI+R++I +A ++ ++A+ I Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 606 Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949 L GC+ Q A P+ SI Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630 >gi|77918660|ref|YP_356475.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544743|gb|ABA88305.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM 2380] Length = 734 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 138/592 (23%), Positives = 272/592 (45%), Gaps = 20/592 (3%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 +L+ + V+ H+L + + + R SLA + W ++ + + ++L Sbjct: 117 LLLRYRVM-HMLRSARLCEDLRVSQARISLAQRIAHLGHWHFNFKTKDFVCSDAVLSLLD 175 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + L IH +D+ + L++ + R Q +R+ + + + Sbjct: 176 RRDDISVHNPESLLRNIHPDDKPRVQAALENAI-GNRQPYQENYRI-NVQGEERRINSQG 233 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 +N NG+ GI D+T+ + + I A D LTG+ R+ F+++L + L+ Sbjct: 234 EIQTNGNGEPEAITGIIQDVTDIYHAEQKIFRLAHFDALTGLAKRKFFMEKLAEAVFLT- 292 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-----------FPDI 608 + + VM++D+D++K+IN+ LG GD +L + +RI L+ Sbjct: 293 EHGHGQLAVMILDLDRFKRINENLGHVPGDQILRKMAKRIQRSLQQCHVLYPSSLTEDHC 352 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 +AR GN F I+L ++ ++ A + K IA P E+ +T SIG + Sbjct: 353 IARFGGNEFAILLPEVQDTHQVNRIAGHLLKDIAQPFTFDNCEVLITTSIGICLFPEGSD 412 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHP 726 ++++NA++A+ AK +G + + S + DR++++ DL A++N E L + P Sbjct: 413 DQQDIIRNADIALRQAKSQGRDTFRLYHPSMGKPTQDRLILENDLRNALKNDEFVLYFQP 472 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + + +++G E LI+W HP+ G F+ +A E +I I+ ++L + I W+ Sbjct: 473 QVDIRSGQLLGAETLIRWQHPQQGLKLPGAFLPLALESGLIIEIDQWVLRQACAQIARWQ 532 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 + + +N++ + + + ++ ++ +++ +E+ +M N ++ Sbjct: 533 AAGYD-KLRLSVNVSGQLFAQEGVAALISDIVRQSGIPTGALEIELTENTLMQNNAQTIS 591 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 L L+++G ++ +DDFGT S LSYL P DT+K + S + IAI R+II Sbjct: 592 TLTDLKQLGTNIAIDDFGTGYSSLSYLKNFPIDTLKIDRSFIRDLENAPGDIAITRTIIA 651 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + +N+ T I + I L +GC Q A P + L ++ Sbjct: 652 LGENLGLTTICEGIETHQQKDLLVDLGCYIGQGYLFARPENLEAFSLRLAQQ 703 >gi|170720732|ref|YP_001748420.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] gi|169758735|gb|ACA72051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida W619] Length = 1098 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 146/583 (25%), Positives = 267/583 (45%), Gaps = 18/583 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441 T ++ + + S E+ + A S D + + R V + G + Sbjct: 515 SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYVEVNDGFCRLTGYS 574 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + G L I +D+ + L + R E R + + + P Sbjct: 575 TAEVIGHSVYEL-GIWADDKQR--SALLVELKERGRVHHREMLGRTKRGDILTVEVSVEP 631 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + S + + A D+++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 632 I--SLNETDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLRRH 689 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F ++L Sbjct: 690 -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748 Query: 622 ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 K+ + A +R+ +A P++L + + VT SIG A T +++LK Sbjct: 749 SGLEGSREAVENKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKR 808 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N + F + S+R+ ++ DL LA+ EL L + P + D Sbjct: 809 ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMESDLRLALARGELALHFQPQVDARDNR 868 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792 IVG E L++W HP+ G ++F+ + EE +I + ++L+ Sbjct: 869 IVGAEVLLRWHHPQLGQQPPAQFIQVLEESGLILEVGSWILDEACDACSRMLTDGLIDAD 928 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + N+ + + + +KL +E +V+ N E + + L+ Sbjct: 929 DFSLCVNISPRQFRQNDFVQRVLRSLDDYRLPRHMLKLEITEGIVIQNLEDTISKMRELK 988 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 + G+S +DDFGT S L+YL +P D +K + + + + I+R+I+ MA++++ Sbjct: 989 RHGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQTFVRDAPVDSNDAEIVRAIVAMARSLD 1048 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + ++ L R+GC Q + PL ++L Sbjct: 1049 LAVIAEGVELTEQLEFLERLGCHLYQGYLHSRPLPLPEFRQML 1091 Score = 111 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 55/157 (35%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 G+ L + + Q + ER LA+ + WDW I + + Sbjct: 250 TQGIELEGVTFLLSTFVDTSERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 A + GL H + + ++RD R S G Q +RV+ + Sbjct: 310 ARAAQLHGLDPIPFHESFDAFFEGVPQDERDGMRQAYRSLREGPEGNYQITYRVQLENGA 369 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ R R + G+ LR G DIT+Q + Sbjct: 370 SRYIESRARLYRDEQGNPLRMAGTLLDITDQVERELR 406 Score = 95.8 bits (237), Expect = 4e-17, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 1/133 (0%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A S+ + + + A+ G+ W WDI RV+ + + G + Sbjct: 17 ANPQESEQAWQNAPQLLAALNGARLGAWLWDIDSGRVSWSRGTQALFGFDPQRPLPNDID 76 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 +L + DR R + + V R+R D HW+ I + G Sbjct: 77 YLDLLPEEDRARTRQLFQAVVNGEPAEKAMRHRIRWPDGSLHWLEINGSLTHDRQGRPQ- 135 Query: 512 YIGIANDITEQKK 524 IGI +IT Q++ Sbjct: 136 MIGIIREITRQRE 148 Score = 49.2 bits (116), Expect = 0.004, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 53/178 (29%), Gaps = 23/178 (12%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442 +I+ + + + +R + S + + + + G Sbjct: 137 IGIIREITRQRERETALINSEKRFATLFHLSPNAILLTRRQDGMIFEVNQHFEDMFGWPG 196 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G L + R S G E ++RA+ + H I+ + Sbjct: 197 EQVIGKTSLELGLWVTPEQRHQVLDSTRS----SSGPTIMEVQLRASSGKIHDGILCTQG 252 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + + D +E+K++ A +D+ +RL LD + Sbjct: 253 IELEG--VTFLLSTFVDTSERKRAE-----QALKDS----------QERLDLALDSAQ 293 Score = 44.2 bits (103), Expect = 0.12, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 47/170 (27%), Gaps = 23/170 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + + + E+ + S D + + + P G ++ Sbjct: 391 AGTLLDITDQVERELRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTHTFGWSA 450 Query: 443 GSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G W I + + I + V + +I Sbjct: 451 EQVIGRTAEKIGLWAESI-----ERAQRIERVIREQALSNVAVV--VNHRNGSPLTCVIS 503 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539 R + + + + DIT+Q+++ E AF D +T Sbjct: 504 SRLI-SVDNHPCS-VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551 >gi|95931184|ref|ZP_01313906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95132746|gb|EAT14423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 951 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 151/602 (25%), Positives = 278/602 (46%), Gaps = 26/602 (4%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 ++G V+I +I + V + V + + L + +GD + D Sbjct: 360 AYVVLGLFVVIGAVISWLVRRQVRQMFLLQRD-------KELILNAAGDGIVGVDRTGRA 412 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--- 484 P A +LG + + + + ++ R+ R Sbjct: 413 SFVNPAAARMLGYDAEDFLRRYVVETIPVVLANGEHVMEQDHPISQTRQLEQGLCVRSDL 472 Query: 485 --VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-------CNAFQ 535 R D + P+ S G + I D+T Q+++ E + + Sbjct: 473 DAFRRRDGTIISVEYVATPLIGSAGQHEGAVLIFKDLTRQQQAEERLEEKKQLLDHMSNH 532 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D+LTG+PNR+ F DRL ++ + + +V+ ID+D++KKIND LG +GD +L+S+ Sbjct: 533 DSLTGLPNRRLFQDRLYHAIERARRSSS-EMSVLFIDLDRFKKINDSLGHELGDKLLISV 591 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 RR+ L+ D LARL G+ F +IL ++S A A + ++ ++ + VT Sbjct: 592 ARRMQSHLRRSDTLARLGGDEFVVILEESSHSHFAAVIARNLLNELSEAFDVESHRLFVT 651 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCL 713 ASIG + + ++ +A+ AMYHAK RG N+ + + D + ++ L Sbjct: 652 ASIGISRYPYDAEDVVGLMSSADAAMYHAKSRGRNNFQFYAPEMNGRAQDFLEMETQLRD 711 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+ + + Y P + D+ +VG EAL++W+HP+ G + +F+ +AEE I I + Sbjct: 712 ALALEQFEVYYQPQYDMRDQTLVGAEALLRWNHPERGMVPPGDFIALAEETGAIVPIGEW 771 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +L ++ R W D+ P+ + +NI+ L + ++ ++ ++ ++L + Sbjct: 772 VLMQVCRQNRQWMDEGL-TPVRVAVNISIAQFRS-NLSQTLEQVLEQSGMPAELLELEIT 829 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891 ES++M + E + LL L++ G+ +++DDFGT S LSYL +P D +K + S + Sbjct: 830 ESMLMEDEEETITLLNELKEKGLHISIDDFGTGYSSLSYLRKLPVDKLKIDRSFIAHVVH 889 Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + AI SII + +N++ I+A+ + E L + C Q A P+ ++ Sbjct: 890 NQSDAAITGSIIALGQNMDLRILAEGVEHEEQRDFLLQHRCYIAQGFLYARPMTAEDFVR 949 Query: 952 LL 953 LL Sbjct: 950 LL 951 >gi|117918886|ref|YP_868078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] gi|117611218|gb|ABK46672.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] Length = 1487 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 137/566 (24%), Positives = 268/566 (47%), Gaps = 12/566 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + + A + + V D+ + I+G + G + Sbjct: 924 LQRQLEDEINLLAQAFENTSEGVLILDVDENIRVANHAAQQIIGSEQHDLVGQSFSQFVQ 983 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +D T + + + E + + + + + M +++ + Y+ + Sbjct: 984 M----KDGLSTEVHQLL-GQDSSWTGERELVGQNGLVCPVWLNVSVMQSASDSSVHYVIV 1038 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DITE+K++ + A D LTG+PNR F RL + + + ++ +D+D+ Sbjct: 1039 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQTAQQTGE-KLALLFLDLDR 1097 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G ++GD +LV + R+ + +L R G+ F I+L + NN +I A Sbjct: 1098 FKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLRNANNLNEINHIAE 1157 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + I P L RE ++ SIG + W + +KNA+LAMYHAK G + + + Sbjct: 1158 RLLAQIVAPFKLFGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFKYY 1217 Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752 ++ + ++ DL A+E E L Y P I + ++ +G+EALI+W HPK G I Sbjct: 1218 SSERNAQALYHLRLEADLRKAIEREEFELYYQPQIDILRGDKFIGMEALIRWRHPKEGYI 1277 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AE ++ I+ ++ R D W + P + +NI++ + E Sbjct: 1278 RPDIFIKVAEACGLVVEIDRWVFRRACLDGAKWVKRCAA-PFKLSVNISAVHFRQPDFIE 1336 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 G++ +++ T S + L +E V+M + ++ L +L+++GI + +DDFGT S L+Y Sbjct: 1337 GLKKILADTQMPTSSLGLEITEGVLMKEVQAAKSHLTQLKELGIEVAIDDFGTGYSSLAY 1396 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L + +T+K + S + AI+ SII +A+N++ T++A+ + ++++ Sbjct: 1397 LRHFDVNTLKIDRSFLIDIATNSADQAIVSSIIELARNLKLTVVAEGVETVEQLEQVFSR 1456 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GC +Q + A P+ + L ++ Sbjct: 1457 GCYIVQGYYFAKPMSVTEFERYLLQK 1482 Score = 102 bits (254), Expect = 4e-19, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ +I + + + + V +Q + +R ++ GS +W+W Sbjct: 775 LLLIFSIIALSLAWYRQRQVRTFMTMNQALTESDDRLRQSLRGSDSDLWEWHRDTQSFYL 834 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +LG + + + +H DRD +S + R + E+R + Sbjct: 835 DNR-GAVLGNHANEIVVTLETLP--VHPEDRDKALGQWNSMLAGEIDRFEAEYRYQRRSG 891 Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP+S + +I R GI +DIT Q++ + I A Sbjct: 892 NWGWLRVRGRPVSRNRTTHEIERVAGIYSDITLQRQLEDEINLLA 936 >gi|330823090|ref|YP_004386393.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|329308462|gb|AEB82877.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicycliphilus denitrificans K601] Length = 888 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 136/566 (24%), Positives = 266/566 (46%), Gaps = 15/566 (2%) Query: 400 IFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455 + + ERQ LA + + + V D ++ P + +LG + G R + Sbjct: 328 LRTAEERQRLASTVLDNAVEGVVVADAHARILSINPVVTRVLGYTEEELLGRNPRVFQSG 387 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D+ + T+ ++ R G Q E R + + + + + ++ G + Y+ + Sbjct: 388 RH--DKAFYETMWEAVR--RTGHWQGEIWNRRKNGEIFPERMSLSAVRDAQGAVTHYVCM 443 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+++K + + + +D+LTG+PNR F+++L L + + V+++++D+ Sbjct: 444 FSDISQEKAQHQRLEFLSHRDSLTGLPNRAWFVEQLGQALCQAQVHGE-QMAVLLLNLDR 502 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G AVGD+VL +T ++ L+ D++ R++G+ ++ + +S A A Sbjct: 503 FKDVNDSYGHAVGDEVLRHITAQVCMSLRPGDLVGRMAGDEIAVLARNLRHSDGAAAVAQ 562 Query: 636 AMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 M + + P E+ S+G + + T+ ++L+ A A+Y AK RG Sbjct: 563 YMIAAASKPWRTPDGIEVVAGVSVGISMFPEHARTAEQLLQGAHSAVYGAKARGRGAHCF 622 Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F S +R+ I+ L A+ L L Y P + + IVG EAL++W P+ G I Sbjct: 623 FDESMIQAARERLEIEARLRSALAQGHLRLYYQPQVDIATGRIVGAEALLRWLDPEEGVI 682 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S + F+ +AE +I + ++++ WR P I + +N++ ++ Sbjct: 683 SPARFISVAETSGVIGPLGRWVMQEACSQGQRWRAAGL-PGIRLAVNVSPYQFQLTDVAA 741 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + + P ++L +ES + PE R +L RL+ +G+ + +DDFGT S L++ Sbjct: 742 CAAQALEDSGLPPHCLELELTESALAERPEAMRQVLQRLQALGVRIAVDDFGTGYSSLAH 801 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + + + +AI +II M +++ T++A+ + + L Sbjct: 802 LKRFPIDALKIDQGFIRDIPSSADDMAISATIIAMGRSLGLTVLAEGVETPEQLAFLRAR 861 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GCD Q + P+ LL+ + Sbjct: 862 GCDSYQGYLCSRPVPAEQFGALLQAQ 887 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 2/140 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + LA+ GSG +WDWD+ + R+T + + +L + N L Sbjct: 203 AARAALARSENILRLALDGSGSGMWDWDLAQRRITGSQGLLRLLRYRGAEL-PRGLNLLR 261 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H DR + + G R++ D + W R + ++ G R+ G Sbjct: 262 RVHPEDRHRLHRAVQRAIAA-GGSFDETARLQRFDGSYCWFQARGQCHRDAQGRPERFSG 320 Query: 515 IANDITEQKKSLEGILCNAF 534 I D+T+ + + E + Sbjct: 321 ILADLTDLRTAEERQRLAST 340 >gi|228988525|ref|ZP_04148613.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771205|gb|EEM19683.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 891 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 173/868 (19%), Positives = 349/868 (40%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 34 SYILYFSNMKEGLPRLFWTILSVGTLSYFIGDIVVTYQRLILKDYYTF---VDPSD--FF 88 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L+E +D + + I I + A F +Y++ ++ I + Sbjct: 89 YLLFLISFAFAF-LYEIIHNRDLLEKLFMICDICI---IVTAQFTLSYYLLIERTIHISS 144 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D F +NL L + L S+LI++ Y + Sbjct: 145 TSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 204 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + + ++ + + + Sbjct: 205 YFIPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISVVM 264 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + M + + +++ L+ V Q L T Sbjct: 265 LIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQVQFNSELEKQIELRTE 324 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 325 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 382 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + D + + + E R + +++ + P+ N I Sbjct: 383 YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKN-HISG 439 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F + + S + VM + Sbjct: 440 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEIS-KVPFAVMFL 498 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 499 DLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPDVK 558 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G N Sbjct: 559 KIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 618 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL LA+ E YLVY P I + ++I+G EAL++W HP Sbjct: 619 SSLYTKELYKKMERKARIEKDLPLALVKEEFYLVYQPQIDISTKKIIGAEALLRWKHPLL 678 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+I EF+ I EE + + ++L R + W + I +N+++K+ N Sbjct: 679 GDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQNN 737 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + + +I+ P + L +E + M + + + L +L++ GI +DDFGT S Sbjct: 738 LIKNILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTAIDDFGTGYSS 797 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 798 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 857 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL + +K L++ Sbjct: 858 QKNNCKYMQGYYFSKPLTSHQFIKFLQK 885 >gi|89902813|ref|YP_525284.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89347550|gb|ABD71753.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 1052 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 138/574 (24%), Positives = 254/574 (44%), Gaps = 18/574 (3%) Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRN 451 +Q ++ E R + S + D + + I G ++ G R Sbjct: 484 ADITQRRQTEAELRIAAIAFESEQGMAITDPQGVMLRVNRAFSAITGYSAPEAVGQNPRL 543 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 H D + + DS V R G Q E R + + + I + + G Sbjct: 544 LSSGRH--DAAFYAAMWDSLV--REGAWQGEIWNRRKNGEVFPEWLTISAVKDPAGQATH 599 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ D++ +K + + I AF D LTG+PNR+ LDRL L A + ++ I Sbjct: 600 YVATFTDLSTRKSAEDQIKSLAFYDTLTGLPNRRLLLDRLKQALASGARHRR-QGALLYI 658 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-----SENN 626 D+D +K +N+ G VGD +L + +R+ L+ D +AR G+ F ++L S Sbjct: 659 DLDDFKTLNNTYGHDVGDQLLQEVAQRLSHYLRAGDTVARPGGDSFVVLLEALSTNSVEA 718 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAK 685 + + + +R +++ P + + TASIG + + E LK AELAMY AK Sbjct: 719 ATEAENTGEKIRLALSQPYQIADHAHRSTASIGVTLFDDRQQEGIDEPLKRAELAMYQAK 778 Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + F ++ DL AV +++ L Y + ++ G+EAL++ Sbjct: 779 TAGRNTLRFFDPQMQTAVMAMAALEADLREAVRSNQFLLYYQAQVSGE-RQVAGVEALVR 837 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G + +EF+ +AE+ +I + ++LE + +W Q + + +N+++ Sbjct: 838 WQHPVRGLVPPAEFIPLAEQTGLILPLGQWVLETACAQLAAWASQPERAHLTVAVNVSAL 897 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + + A + + +P R+KL +ES+++ + E + L++ G+ +LDDF Sbjct: 898 QFHQADFVAQVLAALKRAGANPQRLKLELTESLLVHDAEDVIAKMITLKEQGVGFSLDDF 957 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P + +K + + AI + ++ +A + ++IA+ + E Sbjct: 958 GTGYSSLSYLKRLPLNQLKIDQGFVRDILHDANDAAIAKMVVALADTLGLSVIAEGVETE 1017 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GC Q + L ++ +++ Sbjct: 1018 AQRDFLAAQGCHAYQGHLYSRALPIDAFEAFMRQ 1051 Score = 85.4 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 78/249 (31%), Gaps = 22/249 (8%) Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 + +G A+L + P+ + S++ +++ +K A LL A Sbjct: 274 LPAAGWVLAAVLPTAEAFAPVRAMQQRMLLATSLLTLLAGLVVWWTIKRQL-APLLATAR 332 Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 L + + D I + G L+ + Sbjct: 333 RLAAMADEKQALRALPVTHPDEIGQVVKGFNRLLG-------------------TLGQRE 373 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 + S ++ D +AT+ G + G ++ +H R+ Sbjct: 374 ALLQQILDTSSVAIFLVDRQGRITKANQRMATLFGYPLHELQG--MEYVALVHPAQRETG 431 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R + + + + E AD W + + + NG+ +G+ DIT++++ Sbjct: 432 RKNMLALLDSALQSVDLERLYWRADQTEFWGHLTGQRFVDGNGEEQGLVGVIADITQRRQ 491 Query: 525 SLEGILCNA 533 + + A Sbjct: 492 TEAELRIAA 500 >gi|332558451|ref|ZP_08412773.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides WS8N] gi|332276163|gb|EGJ21478.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sphaeroides WS8N] Length = 830 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 141/589 (23%), Positives = 256/589 (43%), Gaps = 21/589 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F +I+ V + + R + ++W D V + G + Sbjct: 242 FGIIEDVHERRTTVEQLRESEARFRAFADDAPVMIWVTDTEGRNVFVSRSWLGATGQSLD 301 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G W+ +H +DRD I + R EFR+R D + W+I P Sbjct: 302 EALGT--GWIDAVHPDDRDATAAITRDAMRRRIA-YTNEFRIRRKDGGWCWVIDVGHPRL 358 Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556 ++G + YIG DI+ ++++ + + A D LTG+PNR F D + Sbjct: 359 LADGTFIGYIGCCVDISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAV- 417 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 ++ V+++D+D +K +ND G VGD VL + R+ ++ D +ARL G+ Sbjct: 418 -ASLAPERSVAVLMLDLDGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDE 476 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +I + + D A + +I+ P +L V AS+G A ++ E+++ Sbjct: 477 FAVIQTPIRSEQEACDLARRLIAAISKPFDLEGAVPEVGASVGIAFARGRGDSAEEIMRY 536 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G F + R +K L A+ EL + Y P+I L D + Sbjct: 537 ADVALYAAKQAGRGTFRVFDEATDTHLQSRQKMKAALRAALGLGELSVFYQPLIGLRDGQ 596 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + EAL++W G I+ +F+ +AEE +I + ++L W D + Sbjct: 597 VTACEALMRWHRKGAGWITPDQFIPLAEEAGLIGDMGDWVLHEACAQAARWPDS-----V 651 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ L + + + + + P R++L +ESV++ +R+ +L LR + Sbjct: 652 SVAVNLSPLQFHGGALVDQVASALRASGLPPERLQLEITESVLLDPTDRNIGVLQDLRAL 711 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912 G + +DDFGT S L YL PFD +K + S + + R AIL+++ + ++++ Sbjct: 712 GAKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPDAREALAILKAVAGLGRSLDMR 771 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + + + + G D Q + PL I + P + Sbjct: 772 TTVEGVETQAQLDCAIAEGVDEAQGYFFSRPLPAPGIASFISGCLPKRR 820 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 10/168 (5%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 + G L+V T ++ + + + + Sbjct: 101 RRFLVSRRPAGEHLVVTFFEITDLRET------EGVLRQREAHLRNLLELHPVAPFSFTA 154 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + I GL +G+ + W +H DR + R V + E Sbjct: 155 DGVLSDLSDRLVAITGLPAGT--RHVDAWWAAMHPGDRRDLRRAWIRSVRGGQ-SFDAEH 211 Query: 484 RVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 R++ D + W R+ + + + R+ GI D+ E++ ++E + Sbjct: 212 RLQMPDGAYRWFRARVVARPRDQDQQVDRWFGIIEDVHERRTTVEQLR 259 >gi|254457729|ref|ZP_05071157.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] gi|207086521|gb|EDZ63805.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] Length = 595 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 147/583 (25%), Positives = 270/583 (46%), Gaps = 34/583 (5%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT--ILGLASGSMHGPIRNWLPYIHIN--- 459 E L D++W D+ + I ++ + G + Sbjct: 14 ELLKLLTQQLPDMLWVKDLNGKYLYANKAICDGLLMAKDTDEPIGKGDVFFALREREANS 73 Query: 460 DRDNFRTILDSFVGYRRGRLQ-------YEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D+ N+ T + + ++ E+ + ++ + P + +G + Sbjct: 74 DKLNWHTFGELCFNSDQVVIENGEAMKFEEYGNVK--GELLYLEVYKAPFYDEDGKTIGT 131 Query: 513 IGIANDITEQKKSL--------------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 +G DIT KK+ E + A D+LT +PNR F+DRL ++++ Sbjct: 132 VGAGRDITNLKKTQLDLEKNLKILDEQREQLEYQANHDSLTDLPNRVLFMDRLQQSINIA 191 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 DN + ++ ID+D +K+IND LG VGD VL+ ++RR+ ++ D L+RL G+ F Sbjct: 192 QRYDN-KVALLFIDLDHFKEINDSLGHGVGDKVLIEVSRRMKNQMRKSDTLSRLGGDEFC 250 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 IIL + ++D + +++ P+ + + V SIG + + + ++S +LKNA+ Sbjct: 251 IILNDIIDIEDMSDIITSGMEALKEPMEINGHTLYVGMSIGVSVYPNDGNSASSLLKNAD 310 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMY AK G N + + ++ L A+E EL + + P I + ++V Sbjct: 311 AAMYKAKGDGRNTYCFYDEAMTERAFERVFLETALRKALEEDELVVYFQPQIDARENKLV 370 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G+EAL++W+HP G I +F+ +AE MI ++ ++++ W P + Sbjct: 371 GMEALVRWEHPIMGFIYPDKFIPLAEITGMIVQLDRLVMKKALTQFKKWDKAGLNPG-KL 429 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+A K + +N+ E ++ ++ S I+ +E+ +M NPE S L +L +GI Sbjct: 430 ALNLAIKQIEENDFIEFIENILDCEDCSYKNIEFELTENQIMNNPEASIETLQKLSDLGI 489 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 S+ +DDFGT S L+YL +P D +K + S + AI ++II + ++ +I Sbjct: 490 SIAIDDFGTGYSSLAYLKRLPIDKLKIDRSFIKDLPQDADDAAITKTIISLCSSLNLKVI 549 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 A+ + E + + GC +IQ + + PL + K L E Sbjct: 550 AEGVETEKQKNFILQNGCQFIQGYYYSRPLSIEDMTKYLIEHN 592 >gi|119947315|ref|YP_944995.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] gi|119865919|gb|ABM05396.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 727 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 148/568 (26%), Positives = 270/568 (47%), Gaps = 17/568 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + L + + + + D + P +L ++ G + Y HI Sbjct: 141 ELKRVKDHNELLLKSTAEGIISLDPMGKINFANPAAKQLLMYNDDTILG-----IDYAHI 195 Query: 459 NDRDNFRTILDSFVGY-----RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 DN + + +R + D + P+ +N + + Sbjct: 196 QGTDNLTSPFKDCALHHTALSKRIIHDDQQSFHCFDGSSFPVEFTASPICKTNSESSGIV 255 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + DI+E+KK+ + + A D LTG+PNR F L+ + S N + ++ +D+ Sbjct: 256 LVFQDISERKKTEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRSDRRKN-KLALLFLDL 314 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LKIAD 632 D++K++ND LG VGD +L + +R+ ++RL G+ F +IL N+ K A Sbjct: 315 DRFKQVNDSLGHDVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMVILEEVNSESHKAAK 374 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A M S+ P N+L RE+ ++ SIG A + S +LK A++AMY AK +G N+ Sbjct: 375 LAQKMITSLDAPFNILGREVLISTSIGIALCSGSTQCIDSLLKRADMAMYRAKEQGRNNF 434 Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + S + ++ L A++ E +L Y P + +I+GLEAL++W Sbjct: 435 QFYTAELQQQASKSIELENRLRHALQRKEFFLHYQPQVDTNSGQIIGLEALLRWQPDGQA 494 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNE 809 IS EF+ +AEE +I I ++L + W + P + + +N++ + L Sbjct: 495 LISPEEFIPVAEEAGLIVPIGEWVLREACSQLHRWHRSGLLSPTVKMAVNLSVRQLEHTS 554 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ +T PS+++L +E+ VM +P+ +L + +GI L+LDDFGT S Sbjct: 555 LLSTLTQILQETGLKPSQLELEITETAVMKDPDLVVNILHSIHAMGIQLSLDDFGTGYSS 614 Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P +K + S + ++ AIL SII +++N++ T++A+ + + + L Sbjct: 615 LRYLKLLPLHVLKIDRSFINDIGGKQRDQAILESIIYLSRNLDLTVVAEGVETQEQLDFL 674 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 +R C IQ +++ P +I KLL + Sbjct: 675 SRFNCHSIQGYYISKPKSAANIEKLLHK 702 >gi|119897648|ref|YP_932861.1| EAL/GGDEF/PAS/PAC-domain-containing signalling protein [Azoarcus sp. BH72] gi|119670061|emb|CAL93974.1| EAL/GGDEF/PAS/PAC-domain containing signalling protein [Azoarcus sp. BH72] Length = 947 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 150/610 (24%), Positives = 261/610 (42%), Gaps = 18/610 (2%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG--------YFSQGIFSDGERQS 408 RL+ ++ A+ + +IV L + I A+ + + + + Sbjct: 330 TARHRLEFTLLLLAVASTVAVIVSLAFSSWIGRRFASYRGEIAQRNAALEAKNRELQLAA 389 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + + D +T A + GL + ++ G L H D + I Sbjct: 390 RVFECGNEAMMVLDADHRFITVNSACAQLAGLDAAALRGRPAAQLLNDH--DGAGWERIA 447 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 G E VR D + + + NS G Y+G D++ K++ Sbjct: 448 RELAEQ--GAWSGEVTVRREDGPTLPAQLSVSAVLNSAGGATHYVGALTDMSAHKQTEAL 505 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LT +PNR DR + +A D L ++ ID+D++K +ND LG +VG Sbjct: 506 LRHMAEYDALTDLPNRSLLHDRARAAIQGAARTDRL-AALLFIDLDRFKNVNDSLGHSVG 564 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L +R+ LL D +AR G+ F ++L + A+ A + + + P + Sbjct: 565 DALLRQAAKRLASLLHGGDTIARPGGDEFVMLLAEITDRAVAANRAAQIIDAFSTPFRVE 624 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706 E++VT SIG A + + +L+NA+ AMYHAK G N F +R+ Sbjct: 625 HYELSVTPSIGIAIAPDDGVDADTLLRNADAAMYHAKESGRNTYRFFTDEMSLRVRERLE 684 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A+ E + Y P L D I+G EAL++W HP+ G I+ F+ +AE+ + Sbjct: 685 LENLLRQAMSRDEFEVFYQPQFGLSDHRILGCEALVRWRHPERGLIAPERFIPLAEDTGL 744 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I AI +LE WR I + +N + + E + ++++T Sbjct: 745 IVAIGRRVLETACHTAQGWRAAGLG-DIPVAVNASPVQIHHGNFAETVAEVLAETGLPAR 803 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 +++ +ES +M + L L+ +G+ L +DDFGT S L+YL D +K + S Sbjct: 804 LLEIELTESTLMADAAPVAATLAALQDMGVRLAIDDFGTGYSSLAYLKRFQLDKLKIDRS 863 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + I +II +A+++ ++IA+ + + L GC Q + P+ Sbjct: 864 FINDLPGDPDDANITVAIIGIARSLGMSVIAEGVETAAQERFLVDQGCAEGQGYLFSPPV 923 Query: 945 GFNSILKLLK 954 S+ LL Sbjct: 924 PVESMTALLA 933 >gi|327440733|dbj|BAK17098.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Solibacillus silvestris StLB046] Length = 582 Score = 529 bits (1363), Expect = e-147, Method: Composition-based stats. Identities = 141/576 (24%), Positives = 272/576 (47%), Gaps = 14/576 (2%) Query: 387 IQHVLATGYFSQGIFSD---GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + Q + E + + D R ++ + G Sbjct: 1 MSELKSNRSIMQELALSQFPKELIERVFENIAEGIMITDRYRRILSINVAFEFVTGFKLE 60 Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G +H DR + + + G Q E R + + + I + Sbjct: 61 EVQGEKPSILQSGVH--DRAFYIDMWKQI--GKTGIWQGEIWNRRKTGELYPEWLTILAI 116 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATD 561 + G I Y GI D++E+K + + + D+LT + NR ++++R+ +L+ Sbjct: 117 KDEAGKITNYCGIFTDLSERKIVEDELEKRSLHDSLTEVCNRFAYIERMKALLEVTENQM 176 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++ V+ ID+D++K++ND+LG A+GD +L+ +++R+ L+K DILAR G+ F I L Sbjct: 177 TPIQHAVLFIDLDRFKQVNDMLGHAIGDQLLIEVSKRVKALVKNKDILARFGGDEFVITL 236 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + + A FA + + PI + ++++ ++ S+G + + + T+ ++L A+ AM Sbjct: 237 ANIQHPREAAKFAEQVLRVFEAPIKVHDQDVYISTSMGISIYPADGTTTEQLLNRADRAM 296 Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 +K G N + + + + + +L A+EN E L Y P I EIVG+E Sbjct: 297 SFSKDNGRNCYSFYFDELETDSNRVLTLDSELRKAIENREFTLAYQPKISTEKNEIVGIE 356 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+ K G +S +EF+ AEE +I ++ + E P + I +N Sbjct: 357 ALVRWNSEKLGFVSPAEFIEHAEESGLIIPLSELIFELACEGYHQLVSA-GYPNVPIAVN 415 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++S + +Q ++ + S ++ +E VM + + + L +LR++G L+ Sbjct: 416 VSSIHFQQQSFLDSVQTILERNNTSAQSFEIEVTERTVMNSAQETVSKLVKLRQLGFKLS 475 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S + + + AI+ +II MA ++ ++A+ Sbjct: 476 IDDFGTGYSSLSYLVRFPLDVLKIDRSFIQHICSLDDKQAIVDAIIQMAHRLKMKVVAEG 535 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + ++ L MGCDYIQ + + PL ++ + Sbjct: 536 VETSQQVELLKSMGCDYIQGYYYSKPLPMEELIDFI 571 >gi|91786338|ref|YP_547290.1| diguanylate cyclase/phosphodiesterase [Polaromonas sp. JS666] gi|91695563|gb|ABE42392.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Polaromonas sp. JS666] Length = 989 Score = 529 bits (1363), Expect = e-147, Method: Composition-based stats. Identities = 144/542 (26%), Positives = 249/542 (45%), Gaps = 14/542 (2%) Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 V G + + L R + + S + + + + E + Sbjct: 453 QIVFVNDAFERHTGYTRDEVLSRMPGMLQG--PGTRQDELARIFSALQQWK-QARGELVI 509 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 D W+ + I ++ NGD+ ++ + DIT++K + E I AF D LT +PNRQ Sbjct: 510 YRKDGGSFWVDLEIVSVAAQNGDLTHWVAVGRDITQRKAADEKIHHLAFYDPLTELPNRQ 569 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 LDRL L +M ID+D +K +ND +G + GD +L + R+ ++ Sbjct: 570 LLLDRLEQALADCTITRQ-EGVLMFIDLDNFKILNDTVGHSKGDLLLQKVAVRLKGCVRK 628 Query: 606 PDILARLSGNRFGIILISENNSLKIAD-----FAIAMRKSIAMPINLLEREITVTASIGF 660 D +ARL G+ F ++L + A A + ++ P +L + T+SIG Sbjct: 629 LDTVARLGGDEFVVMLQDLGTQPEAATRKAQIVAEKVLATLREPYDLAGYQHYSTSSIGV 688 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENS 718 + + + + SE+LK A+LAMY AK G N V F S + DL + Sbjct: 689 TPFNARQGSVSELLKQADLAMYQAKTMGRNTVCFFDPDMQASVSANAALSTDLRAGLREH 748 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 + + Y P + ++ I G+EAL++W HP+ G +S +EF+ +AEE +I + ++LE+ Sbjct: 749 QFLVHYQPQVD-REQRITGVEALLRWKHPQRGMVSPAEFIPVAEETGLILPLGQWVLEQA 807 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 + W+ + + I +N++ + + + + A I T P +KL +ES++ Sbjct: 808 CLQLAVWQKRPETAGLSIAVNVSVRQFRHPDFVDMVMAAIKHTGIQPHNLKLELTESLLA 867 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896 E + +G L+ +G++L LDDFG S LSYL +P D +K + S + S Sbjct: 868 DRMEIAIAKMGTLKALGVTLALDDFGMGYSSLSYLKRLPLDQLKIDKSFIADVFSDPNDA 927 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 AI +II +A+++ +IA+ + E L +GC Y Q PL ++ Sbjct: 928 AICSAIISLAQSLGLDVIAEGVETEAQRSFLAGLGCGYYQGFLFCPPLPIAEFEAFMQGA 987 Query: 957 FP 958 P Sbjct: 988 AP 989 Score = 81.2 bits (199), Expect = 7e-13, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 10/195 (5%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG------IFSDG 404 + M R D AL +V + LA + + Sbjct: 126 GVLAVMDAAARACRDGDLDALNILGRQVVAQLDLRRQHKFLADRSAEREQQSRMRLQHSE 185 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 R +A+ + W ++ D +T + + ILG S +M + L + R Sbjct: 186 NRLHIAMRTAQMGNWSLNLADDSLTLSSEFPAILG-TSAAMPQTLEELLLHYAAESRGRL 244 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R ++ + E ++ A + W+ I + + G I R G DI +K+ Sbjct: 245 RHVISEC-ARKGTPFDEEAQMLTAQDGRRWVRIIGEVVRDGQGAITRIQGALQDINARKQ 303 Query: 525 SLEGILCNAFQDNLT 539 + E L A + LT Sbjct: 304 AQEETLRLAMR--LT 316 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 37/233 (15%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +Q + A + R + + + D + +L ++ Sbjct: 293 GALQDINARKQAQEETLRLAMRLTTTLASITEAFVTLDREGRFTYLNQESERLLQRSTAE 352 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G W + R + + R ++++E+ A + W+ +R P Sbjct: 353 LLGQ-EIWQDF-GEEVSGRLRQHIQRALATNR-QVEFEY-FDAPLGK--WLEVRAYPF-- 404 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI--LDLSATDD 562 D++E++ S E ++ TGI RL I + ++ Sbjct: 405 ----AEGLAVYFRDVSERRNSQEQLMLLE-----TGIA-------RLNDIVVIVEASPHH 448 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVG---DDVLVSLTRRIGELLKFPDILARL 612 P ++ +ND G D+VL + + D LAR+ Sbjct: 449 GSGPQIVF--------VNDAFERHTGYTRDEVLSRMPGMLQGPGTRQDELARI 493 >gi|39996049|ref|NP_952000.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|39982814|gb|AAR34273.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA] gi|298505072|gb|ADI83795.1| sensor diguanylate cyclase/phosphodiesterase, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 842 Score = 529 bits (1363), Expect = e-147, Method: Composition-based stats. Identities = 151/652 (23%), Positives = 294/652 (45%), Gaps = 19/652 (2%) Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 + L ++ +++ G A+L+ L+ +++ I+ Sbjct: 190 ITLALFTLSAASAVALLFAMGGGTLSAILISRPIALLQEGV--------EQVGQGILDTR 241 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + + + + I + + D + D + Sbjct: 242 IDISGNNEIGRLAGAFNRMTTELRAAKDEITTARNYLDNVICSMADALLVVDTNGTVMNV 301 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 P + +LG + G R++ + D + ++I+ + E R+ Sbjct: 302 NPALCGLLGYRENELIG--RSFSSIL--ADGGHGQSIIAEMAEQGQVP-DRELLYRSRQG 356 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + +++ M N +G++ + IA+D+ E+K+S E I A+ D LTG+PNR F DR Sbjct: 357 ELIPVVLSGGAMRNQDGEVCGIVCIAHDMRERKRSEEEIRRLAYFDPLTGLPNRALFQDR 416 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 ++ L ++ ++ ++ +D+D++K IND LG A+GD +L S+ R+ ++ D LA Sbjct: 417 VSHALAVARREEGA-VALLFLDLDRFKDINDTLGHAMGDLLLTSVADRLKAHVRVSDTLA 475 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL + F +IL + ++ A ++ + +L +E+ ++ SIG A + S Sbjct: 476 RLGDDEFVVILTGARDERGVSIVAQSLLDLLTPSFDLEGKEVFISTSIGIALFPSDGEDG 535 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPII 728 + +L A++A++ AK G N + R DR +++ L A+ N E YL Y P I Sbjct: 536 NVLLSRADMALHAAKEAGRNVYRFYSDDMNRSAQDRRGLEDRLRRALANEEFYLDYQPQI 595 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 + I G+EAL++W+HP+ G I F+ AEE+ I+ I ++L +W++ Sbjct: 596 DMRTGGIFGVEALLRWNHPEEGLIPPGRFIPAAEEMGFIRRIGEWVLRAACLQCRAWQES 655 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 PP+ + +N++ + + ++ +T P+ ++L +ES ++ + + L Sbjct: 656 GL-PPVRVAVNVSGHQFNQPGFIDMVDRVLEETGLDPTLLELELTESTLLEGARDTIMTL 714 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 L+ GI L +DDFGT S LSYL + P D +K + S + AI+ +II MA Sbjct: 715 IDLKVRGIHLAIDDFGTGYSSLSYLKHFPIDRLKIDRSFVRDIVSDLDDRAIVEAIIAMA 774 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 ++ ++A+ + E +++ L GCD +Q + P+ + L P Sbjct: 775 HSLGLRVLAEGVEREEELELLRERGCDEVQGYYFGRPMSARDLEARLMAALP 826 >gi|291613404|ref|YP_003523561.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291583516|gb|ADE11174.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 830 Score = 529 bits (1363), Expect = e-147, Method: Composition-based stats. Identities = 163/576 (28%), Positives = 268/576 (46%), Gaps = 15/576 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 ++ + + +LA S W++D++ T ++ + + G + Sbjct: 253 EVVKRTEELARTNDELALAAKMSTLGYWEYDVLAREFTFNDQYYSLHFTTASEVGGYRLS 312 Query: 452 WLPY----IHINDRDNFRTILDSFVGYRRGRL--QYEFRVRAADNQFHWMIIRIRPMSNS 505 + + IH D + + + E R AD WM IR + S+ Sbjct: 313 YEDFAKRFIHHEDTQRISDHIQFELDSSEADFVVETEIRTLCADGSMRWMRIRFKSQSDE 372 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 +G + G++ DITE+K+S E I A D LTG+PNR+ F DRL + S + L Sbjct: 373 HGRKYKLTGVSQDITEKKRSEETIWQQANFDPLTGLPNRRMFQDRLEHEIKKSNR-EGLP 431 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 +M ID+DK+K++ND LG GD +LV +RI ++ D +ARL G+ F +IL + Sbjct: 432 LALMFIDLDKFKEVNDTLGHDKGDILLVEAAQRISGCVRESDTVARLGGDEFTVILSELD 491 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ I A A+ +++ P L E V+ASIG + + ++ NA+ AMY +K Sbjct: 492 DANSIERIAQAIIQALVAPFLLAEEVAFVSASIGITLYPNDAPNLELLMSNADQAMYASK 551 Query: 686 HRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N F S + +R+ + DL A+ ++ L YHPI+ L I EALI+ Sbjct: 552 SAGRNRFSYFTPSMQAAALNRMHLINDLRDALSRNQFRLHYHPIVELSSGNIHKAEALIR 611 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 WDHP G I+ +EF+ +AEE MI I ++ R ++ R++ + P I +N + Sbjct: 612 WDHPVRGLINPAEFVALAEESGMIVEIGDWVFRESVRQVLRLREE-HHPEFQISVNKSPI 670 Query: 804 DLLDNE--LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 +++ + + + + I + +E +++ E + L LR GI + LD Sbjct: 671 QFRNDDRYFRDWLPH-LQQLGLPGECITIEITEGLLLDATESVQAKLLDLRDAGIQVALD 729 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL D +K + S + T + + +II MA + +IA+ I Sbjct: 730 DFGTGYSSLSYLKKFDIDYIKIDRSFVRNLTATSDDMVLCEAIIVMAHKLGLKVIAEGIE 789 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 LT GCDY Q + PL + +LK Sbjct: 790 TATQRHLLTAAGCDYGQGHFFSRPLPSHEFESMLKN 825 >gi|206975811|ref|ZP_03236722.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|206745905|gb|EDZ57301.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] Length = 604 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 145/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 43 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 100 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L R L E R + + ++++ I + P N +++ G Sbjct: 101 FIDPKDHDLLQKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 157 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 158 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 216 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 217 RFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 276 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + + ++KNA++AMY AK G N Sbjct: 277 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFIF 336 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++++G EALI+W HPK G + Sbjct: 337 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIV 396 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 397 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 455 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 456 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 515 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 516 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 575 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 576 NCDHIQGFFISKPVSSKDVWRLLHKK 601 >gi|312112576|ref|YP_003990892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] gi|311217677|gb|ADP76281.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] Length = 842 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 154/810 (19%), Positives = 334/810 (41%), Gaps = 37/810 (4%) Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLG---Y 231 L+ ++ T+ + + V+ +AI + + + S + + +V Sbjct: 36 LYFVAEANQYLSLHTILEFLSVTVSLSIAIQGWMIFPQHLSRYRLWYSVVFLIVGIIDLL 95 Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIA 291 ++ + + L+ + S L+ + ++F ++ + ++ F Sbjct: 96 HTLSYKGMPGLIVVESSPQKATWFWVAARLTQACMLFFIIFFPDRQVQSRQKKTMFIFSV 155 Query: 292 CIAILFCMSFYYPMVTASI-------------ARITLASIVLYYTYFIIYHGMKGYERA- 337 ++ I + + T +++ K + Sbjct: 156 LYVLVISYIIIRYEQKLPILVVDGKGTTNLKNFLEYIIILFYASTAYMLLCSYKKQPKKA 215 Query: 338 -VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATG 394 + LI A++ + + + + + G + + + T+ + A Sbjct: 216 HLDLILAFVFLILSEFLFTLYKNVYDLQNFLGHLYKGISYIYFMKGIYIATIKEPYDAQK 275 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + G+ V D + + +LG + G Sbjct: 276 KAEEELKKREKYLKTITSSLGEGVIVLDKDKKITFINQEAERLLGYQKNELLGK--ALFQ 333 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRV-----RAADNQFHWMIIRIRPMSNSNGDI 509 IH ++ L + L+ +RV D + PM + NG++ Sbjct: 334 KIHCGS-EHQCDSLRECPLCQTAELKKAYRVEEDFFVRKDGTLLPIAYVSTPMIDDNGEV 392 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + + + DITE+KK E I A+ D LT +PNR+ +++L L + N R ++ Sbjct: 393 IGSVIVFRDITERKKYDEKIKYQAYHDALTDLPNRRYLIEKLKNELKKAEEH-NSRIAIL 451 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +K IND G +GD +L ++ +R+ ++ +ARL G+ F ++L + Sbjct: 452 YLDLDNFKNINDSFGHVMGDLLLKNVAQRL-TMIHPDCFIARLGGDEFAVLLSGND--FN 508 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 I + A +S+ PI L +E+ +T S+G + + ++++A++AMY AK +G Sbjct: 509 IEEIACKTIQSLNQPIKLENKEVFITTSVGISVYPKDGDDEMTLIRHADMAMYDAKKKGK 568 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + + I++ L A+E E+ L Y PII + ++I+GLEAL +W+HP Sbjct: 569 NQFSFYTAELEQQKIRKSKIEQLLRTAIERKEVSLCYQPIIDTVSKQIIGLEALARWNHP 628 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G+I ++EF+ +AEE I ++ +L+ + + + +++ +N++ + L Sbjct: 629 EIGDIPANEFIAVAEENGQIVSLGKHILKTALQHLKQLHEIGFDY-LYVSVNLSLRQLRH 687 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 +E + L+ K S +++ +E + + + + + L+ IG+ + +DDFG C Sbjct: 688 HEFTALISQLLQKNKLQASHLEIEITEHIALSDEKCVIHNIQELKDIGVRIAIDDFGVGC 747 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S + YL DT+K + S + + + ++I A N+ ++A+ + + Sbjct: 748 SSIGYLRTFSVDTLKIDKSFIFDVATNPNTAQLTSALITFAHNLNLQVVAEGVESAEQLC 807 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C+ IQ + P+ F ++ LL Sbjct: 808 FLEQHHCNKIQGYLFSPPVSFEQLVSLLHS 837 >gi|160874481|ref|YP_001553797.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160860003|gb|ABX48537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS195] gi|315266718|gb|ADT93571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS678] Length = 1015 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 149/568 (26%), Positives = 262/568 (46%), Gaps = 10/568 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T + + G + L Y +N Sbjct: 452 IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYREFEVRDQHIRLL-YCDLN 510 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 RD + + + +G+ Q E R + + + + + I +++ G R + + +DI Sbjct: 511 GRDFYIKMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K++ I A D LTG+PNR+ L+ L++ + + + N ++ +D+D +K++ Sbjct: 569 TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ R+ ++ D++ARL G+ F ++L S + I A + + Sbjct: 628 NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENILR 687 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 688 RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ L E+ EALI+W H + G +S +EF Sbjct: 748 QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR +WR + + I I +N + D L Sbjct: 808 IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 867 LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 927 DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962 Q + P+ + + PLV Sbjct: 987 GQGYLFSRPVPAAEFTQKYLQDPPLVSR 1014 Score = 111 bits (279), Expect = 5e-22, Method: Composition-based stats. Identities = 64/410 (15%), Positives = 133/410 (32%), Gaps = 50/410 (12%) Query: 174 YLWEPNFYKDTVNSFTLYRGIIIG-VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232 ++++P + DT + G+ G + + +A+ +T Y R S+ + V+ Sbjct: 58 WIYQPGVFFDTRSVILCISGLFFGGLPTFIAVVMTALY---RISIGGAGMWIGVGVIVSS 114 Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292 + + + +++ F++L + +T + Sbjct: 115 GLIGVIWRQYRKSYLANISGGEIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTI 174 Query: 293 IAILFCMSFYYPMVTASIARI------------TLASIVLYYTYFIIY-----------H 329 I + + R + + Sbjct: 175 FPIATWLLSRLLSRRFELERDEQIRLQDDFLFRSQFNAGNIGIAITGIDQKWIKVNPRLC 234 Query: 330 GMKGYERAVLLIPAWIL------IFIWFIGLWMAITKRLDND------IIQPALVGGLVL 377 M Y A LL W + + + + +DN I++ V + Sbjct: 235 QMLKYSEAELLRMTWAQITHPDDLETDALKFELMLQGDIDNYEMDKRFIVKDGSVVYTHM 294 Query: 378 IVI---------LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 V L+ + A + Q + + E+ L + S VWDWDI DR+ Sbjct: 295 TVACKRGGNNAVLLVIAGYLDITAQAFADQEVLASREQLELVLSSSDLGVWDWDIRHDRI 354 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 A ILG ++ R W+ I DR +++ + + + E+R+ Sbjct: 355 ERNARSADILGCDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTL 414 Query: 489 DNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + + W++ + + ++N + LR G DIT+ K E + +A D Sbjct: 415 NRKVRWILDTGKVVSRDANDNALRMCGTYTDITDAKLIEESLKLSALVYD 464 Score = 88.1 bits (217), Expect = 7e-15, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 73/273 (26%), Gaps = 10/273 (3%) Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 + + + F G+ + + Y + + I + IV +I+ Sbjct: 65 FFDTRSVILCISGLFFGGLPTFIAVVMTALYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386 + A + L + + L N I P L + ++ + Sbjct: 125 RKSYLANISGGEIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184 Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q D + I + + P + +L + + Sbjct: 185 LLSRRFELERDEQIRLQDDFLFRSQFNAGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 W H +D + + + + + R D + + + Sbjct: 245 L--RMTWAQITHPDDLETDALKFELMLQGDIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 N +L I DIT Q + A ++ L Sbjct: 303 NNAVLLVIAGYLDITAQ--AFADQEVLASREQL 333 >gi|146309526|ref|YP_001189991.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas mendocina ymp] gi|145577727|gb|ABP87259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas mendocina ymp] Length = 960 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 140/580 (24%), Positives = 274/580 (47%), Gaps = 12/580 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++ +L T + Q LA + + ++ D + + + G Sbjct: 380 AGRVRRMLGTRRDVSARRQQEQEQRLAATVFEAASEGIFILDPDYRVLAVNRAFSAVTGY 439 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + G R I + ++ + G Q E + + +++ Sbjct: 440 SREEVVG--RTVTSLIGSREMRRQYQMIRQELDG-SGSWQGELIETRKSGELYPQWLQLN 496 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + +++G +G D+T ++++ E + + D LTG+ NR F +RL + Sbjct: 497 LVRDASGRPSHIVGFFADLTARREAEERLRYLSHYDELTGLANRSLFKERLHEASQRARQ 556 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ ID+D++K +ND LG V D +L ++RR+ + + D +ARLSG+ F I+ Sbjct: 557 SGR-SIALVHIDLDRFKLLNDSLGHEVADQLLRQMSRRLTQAVPEADCIARLSGDEFAIL 615 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L + + +A A + + +P+++ E+ V+AS+G + ++ A +A Sbjct: 616 LDAYGSLSSLARVASRLLAKLRLPMDVGGHELVVSASLGISLLPDYAREIGALISQANMA 675 Query: 681 MYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 + HAKH GGN + F + R+ ++ L A+E +L + Y P + L D+++ Sbjct: 676 VQHAKHLGGNTFQFFTDNLQACTLERLQLENQLRKAIEEGQLEVFYQPKLNLADDQLNAA 735 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP+ G ++ EF+ +AEE +I I F+L + R W+ Q I + + Sbjct: 736 EALVRWRHPQQGLVAPGEFIGLAEETGLIAPIGEFVLRQACRQARQWQQQGLAE-IRVSV 794 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI+ L L ++ ++ +T +P ++L +ES ++ N + + +LR++G+ L Sbjct: 795 NISVYQLRQGNLTSLVRQVLEETGLAPQYLELELTESQLLDNVDSVVVTFRQLRELGVKL 854 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAK 916 +DDFGT S LSYL P VK + + + + + AI R+II MA ++E ++A+ Sbjct: 855 AIDDFGTGYSSLSYLKRFPVHYVKIDQTFIRDLSPGGEDAAITRAIIAMAHSLELKVVAE 914 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + + L CD IQ ++ P+ + +LL+ + Sbjct: 915 GVETQAQMDFLKSQNCDEIQGYLISRPVEAAAFAELLRAQ 954 Score = 134 bits (337), Expect = 8e-29, Method: Composition-based stats. Identities = 58/380 (15%), Positives = 122/380 (32%), Gaps = 31/380 (8%) Query: 185 VNSFTLYRGIIIGVASLLAIFLT--IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 + LY+G + +L + L + S+ L+ + ++L + + Sbjct: 30 ERTRLLYQGSRLPTLLMLLVGLACSLLLWREGSAPLLAGWLAWVLLLVLLRLTQVNAFNA 89 Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 WR +S + F + G+ AIL Y Sbjct: 90 ALPSRQAESYWRRNFLFGAGASGLTLAFAVIVLVPPDVFYQQALVYGLIAAAILSASVAY 149 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW---------FIG 353 ++A + + + + ++ + +I L+ + + Sbjct: 150 AVSLSAFLTFALPCLLPSAAFLLLSDNSLQRGWGLLSVILFLALLVVAWQVNRLVQRSLL 209 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVIL------------------IGFTVIQHVLATGY 395 + N GL + + V + L Sbjct: 210 QRFHNQALIANLEHAKQRAEGLNEELAREVEQRRRAERELRGAHGELEMRVAERTLELDE 269 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + R +LA+ S +WDWD+ D+V + + + GL + +R+ P Sbjct: 270 ATHALGKSQARLALALEASELGLWDWDLESDQVHHS-HLRELFGLEPEQVQVMLRDLTPR 328 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIG 514 +H +D R L + R Q E+RVR D + W+ R R + ++ G + R +G Sbjct: 329 LHPDDLPRLRRALVEHMKGRSEDYQIEYRVRHVDGHWVWVEDRGRAVERDAAGRVRRMLG 388 Query: 515 IANDITEQKKSLEGILCNAF 534 D++ +++ + A Sbjct: 389 TRRDVSARRQQEQEQRLAAT 408 >gi|330970417|gb|EGH70483.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 639 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 148/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI--VILIGFTVIQHVLATGY 395 + + + + L + + Q + G L+ V++ + G Sbjct: 14 LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGE 73 Query: 396 FS-QGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + D +R LA + + V D V I G + + G Sbjct: 74 AQFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133 Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + H L S G+ E R + + IR + +G Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQP 188 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ + +DIT K+S + + A D LT +PNR DR++ L + ++ Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSRRGCALL 247 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 V+D+D ++ IND LG +GD+VL + R+ L ++RL G+ F +++ + + + Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHMVH 307 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A A + + P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 367 Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + + RV + +L A+E EL + Y P+ L+ I +EAL++W HP Sbjct: 368 EGFALYTEELTAQAQQRVQLASELRQAIEQDELRVFYQPVYDLVTGRICAVEALVRWQHP 427 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G +S +F+ IAE+ +I I+ ++L R + +W + + +N++S+ Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 486 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ + ++++T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT Sbjct: 487 GDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L L +P +K + + G IAI+R++I +A ++ ++A+ I Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 606 Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949 L GC+ Q A P+ SI Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630 >gi|46201519|ref|ZP_00054892.2| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 804 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 135/562 (24%), Positives = 253/562 (45%), Gaps = 14/562 (2%) Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHIN 459 ER SL + + ++ D + P I G + G + L H Sbjct: 1 MERLSLYQAVFDNAFEGMFATDCDNRIIAVNPAFTAITGYTAEEAVGNDPHMLSSGFH-- 58 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 DR + + G Q E R D + + + I ++ G R I + D+ Sbjct: 59 DRAFYEEMWAKLSS--TGLWQGEVIDRHKDGRPVRLWLSISSQRDAEGKTARRIAVFRDV 116 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE +++ E + + D LT +PNR FLDRL L L+ + + ++ I +D +K I Sbjct: 117 TEARETAEQLWQRSNFDPLTELPNRNLFLDRLLQALVLAGR-EGSKAAMLFIGLDGFKNI 175 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +GD VL +RR L+ D AR G+ F ++L + ++ ++ + Sbjct: 176 NDSLGHWIGDKVLQEASRRFQNCLRQGDTAARFGGDEFTVVLSGIRATAEVEAVIRSVLE 235 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697 + P + I ++ SIG W +++NA A+ AK G N F + Sbjct: 236 VLQEPFTVEHHHILISCSIGVCLWPGDGEDVEALMRNATAALQQAKQAGRNTFRFFTPAM 295 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + R + ++L A+ E +LV+ P++ + ++ EAL++W + G +S +F Sbjct: 296 DARAQARSRLADELSSALAQGEFHLVFQPLVDVKTGKVNAAEALLRWHNRYLGVVSPDQF 355 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE+ +I+ I ++L R+ + W+ I I +NI+ + ++ ++ Sbjct: 356 VPLAEEIGLIRPIGEWLLTAACREALVWQGMGLGE-INIAVNISPRQFQQGDIVGIIRRA 414 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T P + + +E +++ N E + +R +G+SL++DDFGT S LSYL P Sbjct: 415 LEETRLPPWLLTIEITEGLLLSNGEEILAKMETIRALGVSLSVDDFGTGYSSLSYLKSFP 474 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + ++ +II + ++ ++A+ + + + +T +GCD Sbjct: 475 VDVLKIDRSFIADMGEHSDDATMVEAIIALGHSLHLEVVAEGVETQHQMDFITNLGCDVA 534 Query: 936 QDSHVASPLGFNSILKLLKERF 957 Q + PL + + ER Sbjct: 535 QGYFFSPPLSAARFREFVLERQ 556 >gi|186683815|ref|YP_001867011.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc punctiforme PCC 73102] gi|186466267|gb|ACC82068.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc punctiforme PCC 73102] Length = 824 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 158/577 (27%), Positives = 277/577 (48%), Gaps = 12/577 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q + + + V + DI+ ++ V P I + G+++ Sbjct: 244 VLVFQDITERKQILAALARRQQEFKALVENAPDIISRFNTQLRYVYVNPAIEKVTGISAE 303 Query: 444 SMHGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G L + R + F + + + A Q R+ P Sbjct: 304 TFIGKTNAELNL--PEEFCRMCDRKLGQVFQTKQETEFECTLAIAA---QTRHYHTRLVP 358 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 S+ + + I+ +IT K + ++ +AF D LT +PNR F++RL L L+ Sbjct: 359 ELASDESVYFVLSISRNITALKLAEAQLIHDAFHDILTSLPNRALFMERLERALMLAKRR 418 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + V+ +D+D++K +ND LG +GD +L +L RR+ ++ D +ARL G+ F I+L Sbjct: 419 ADYTFAVLFLDLDRFKVVNDSLGHMIGDQLLTALARRLENCVRAGDTVARLGGDEFTILL 478 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 NN + +++ L E+ T SIG S ++L++A++AM Sbjct: 479 DDINNINDAIGVVERIHEALTSAFTLSGYEVFTTVSIGIVVSKGSYNLPEQILRDADIAM 538 Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G E F + + + + ++ DL AVE E + Y PI+ L +I+G E Sbjct: 539 YRAKALGKARHEIFDSTMYTQITKLLELEMDLRRAVERQEFQVYYQPIVLLETCKIIGFE 598 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILI 798 AL++W HP+ G + F+ IAEE +I + ++L R + +W+ Q PP+ I + Sbjct: 599 ALVRWQHPQHGLVPPESFIPIAEETGLIIPLGYWVLGEACRQMRAWQIQFPTDPPLTISV 658 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++K L +L E + ++ +T S +KL +ESV+M N + + +L +L+++ I L Sbjct: 659 NLSTKQFLQPDLIEQINQIMQETALEASNLKLEITESVLMENIQSATFMLLQLQQMNIQL 718 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAK 916 LDDFG S LSYL P +K + S +T G+ + + I+++II +A+++ +IA+ Sbjct: 719 HLDDFGIGYSSLSYLHRFPSHALKIDRSFITKIGANGENLEIVQAIITLAESLNIDVIAE 778 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I + +L M C Y Q + PL SI L+ Sbjct: 779 GIETVEQLSQLRAMKCKYAQGYFFSQPLDSKSIETLI 815 Score = 68.1 bits (165), Expect = 8e-09, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 2/142 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SG 443 I+ L+ + I + + + + GD V D P + G S Sbjct: 114 FTIEITLSKHRTEKKIKQNEQWLTTVLKSIGDAVITSDASGTVTFMNPIAEELTGWNYSD 173 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + H R + + + L + + + + I + Sbjct: 174 AFGKEATEVFNIAHEETRIIIESPITQVLQSGITVGLPEQTILITKNGAEIPIDDSIAAI 233 Query: 503 SNSNGDILRYIGIANDITEQKK 524 + NG+I + + DITE+K+ Sbjct: 234 KDDNGNITGAVLVFQDITERKQ 255 >gi|304409445|ref|ZP_07391065.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|307303803|ref|ZP_07583556.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] gi|304351963|gb|EFM16361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|306912701|gb|EFN43124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] Length = 1015 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 149/568 (26%), Positives = 263/568 (46%), Gaps = 10/568 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T + + G + + L Y +N Sbjct: 452 IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYRAFEVRDQHIRLL-YCDLN 510 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 RD + + + +G+ Q E R + + + + + I +++ G R + + +DI Sbjct: 511 GRDFYTQMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K++ I A D LTG+PNR+ L+ L++ + + + N ++ +D+D +K++ Sbjct: 569 TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ R+ ++ D++ARL G+ F ++L S + I A + + Sbjct: 628 NDTLGHAMGDLLLIETAIRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENILR 687 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 688 RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ L E+ EALI+W H + G +S +EF Sbjct: 748 QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR +WR + + I I +N + D L Sbjct: 808 IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 867 LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 927 DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962 Q + P+ + + PLV Sbjct: 987 GQGYLFSRPVPAAEFTQKYLQNPPLVSR 1014 Score = 110 bits (274), Expect = 2e-21, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 2/159 (1%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 L+ + + Q + + E+ L + S VWDWDI DR+ A ILG Sbjct: 306 ALLVIAGYLDITSQALADQEVLASREQLELVLSSSDLGVWDWDIRHDRIERNARSADILG 365 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 ++ R W+ I DR +++ + + + E+R+ + + W++ Sbjct: 366 CDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTLNRKVRWILDTG 425 Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + + +++ + LR G DIT+ K E + +A D Sbjct: 426 KVVSRDAHDNALRMCGTYTDITDAKLIEESLKLSALVYD 464 Score = 81.9 bits (201), Expect = 5e-13, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 74/273 (27%), Gaps = 10/273 (3%) Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 + + + F G+ + + Y + + I + IV +I+ Sbjct: 65 FFDTRSVILCISGLFFGGLPTFIAVVMTALYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386 + A + L + + L N I P L + ++ + Sbjct: 125 RKSYLANISGREIFLFAYAVHIIMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184 Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q D + I + + P + +L + + Sbjct: 185 LLSRRFELERDEQIRLQDDFLFRSQFNVGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 W H +D ++ + + + + R D + + + Sbjct: 245 L--RMTWAQITHPDDLESDALQFELMLQGEIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + L I DIT Q +L A ++ L Sbjct: 303 SNTALLVIAGYLDITSQ--ALADQEVLASREQL 333 >gi|157373981|ref|YP_001472581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] gi|157316355|gb|ABV35453.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] Length = 817 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 135/570 (23%), Positives = 257/570 (45%), Gaps = 12/570 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448 + + + E S + V D + T + I G + + G Sbjct: 253 LSRNISQHKAVQEQLELSGRVFENSVEGVMITDRDGKIIETYGAFSEITGYSREEVLGKN 312 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + H D+ + + + +GR E R + ++ + M +G Sbjct: 313 PSMFSSGRH--DKAFYDDLWTGLLH--KGRWHGEIWNRRKNGAIFPQLVTLSSMLGDDGL 368 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + ++ + DI+ QKK+ E + A+ D LT +PNR + ++ L + + + Sbjct: 369 VRYFVAVFTDISAQKKNEEQLAHLAYHDPLTNLPNRMTLTAQIEQELRHAQ-YQGSQLAI 427 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + ID+D +K+IND G +GD++LV L R+ D LAR+ G+ F ++ S Sbjct: 428 VFIDVDLFKQINDSFGHLMGDEILVELANRLTAQKGAEDTLARIGGDEFVVLFPGGGGSE 487 Query: 629 KIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ +R++ P ++ E + + +TAS+G + + +L+NA+ A + AK Sbjct: 488 ELTLALSKLREAFEQPFSVGENDQVRLTASMGVSVYPHDGKDGYTLLRNADAAKHRAKQD 547 Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 N + S + + ++ L +A+E +LVY P + + VG EAL++W Sbjct: 548 SRNSYAFYTESLTLESREHLKLQSALHMALEEGNFHLVYQPKLNFNSLKTVGFEALLRWR 607 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 P G+IS F+ IAE++ +I AI ++L + W +Q I +NIA + + Sbjct: 608 DPVLGDISPGVFIPIAEKIGLINAIGSWVLRAACLQGVKWIEQGKTFG-RIAVNIAGQQI 666 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + E ++ ++++T + ++L +ES +M +PE + L L +GI L++DDFGT Sbjct: 667 KRSSFVEEVKQILNETGFPAQSLELEVTESFMMSDPEVAIRDLRVLGDLGIELSVDDFGT 726 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL +P +K + S + AI +++I + + +IA+ + E Sbjct: 727 GYSSLNYLKKLPIHKLKIDQSFVRDIPSDANNTAIAKAVIALGHALNLQVIAEGVETEEQ 786 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L GCD +Q + P ++ + L Sbjct: 787 ADFLRESGCDEVQGYLYSRPQLPEALQQFL 816 Score = 51.9 bits (123), Expect = 5e-04, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 2/124 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 L + + VW DI V + G + + + F Sbjct: 147 LQLFIDSLKEHVWMKDIEGRYVIFNRSVEKSWGKTREEIMNKTDE--ELFVADLAEEFIQ 204 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + E + A+ +W+ P+ +G + IG++ +I++ K Sbjct: 205 ADTEAINKGEQITAGECEGQHAEIDRYWLETAKVPVVTDDGCLKGVIGLSRNISQHKAVQ 264 Query: 527 EGIL 530 E + Sbjct: 265 EQLE 268 >gi|89092543|ref|ZP_01165496.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) withPAS/PAC sensor [Oceanospirillum sp. MED92] gi|89083055|gb|EAR62274.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) withPAS/PAC sensor [Oceanospirillum sp. MED92] Length = 878 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 139/567 (24%), Positives = 248/567 (43%), Gaps = 14/567 (2%) Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + E+ LA + + + D + I G + G + L H Sbjct: 318 ASIEQLRLAGIAFSSTNEGIMITDKRNRIIDINRAYMNISGYGRDELIGKNPSILRSEHH 377 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIAN 517 + + F + + R Q E R + + + I + + N + ++ + Sbjct: 378 S--NEFYQSIWKSLEEER-HWQGEIWNRLKNGEVVPHWVNINAVHDPNTDALTHFVSVIA 434 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI+ K S E + A D LT +PNR F RL L + + +D+D++K Sbjct: 435 DISNIKASEEKLSHLAHHDALTNLPNRLLFSARLDHALTHREASEK--IVMFHLDLDRFK 492 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG GD +L+ +T R+ +L D LAR+ G+ F I++ + A + Sbjct: 493 HINDSLGHKYGDQLLLQVTERLKGVLSDKDTLARVGGDEFAILVEELEHVSDAESIADRL 552 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +++ P L ++ TASIG A + K+A++A+ AK G N+ F+ Sbjct: 553 VEAMEQPFTLDGKDYFTTASIGLALAPDHGDDIDTLTKHADIALNQAKDSGRNNFAFFQP 612 Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + ++ +L A+ ++ L Y P + IVG EALI+W HP+ G I + Sbjct: 613 ELSETVQEWIKLEPELRKALAENQFQLHYQPQVDSTGTAIVGAEALIRWHHPEMGIIPPN 672 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ IAEE+ ++ I +++ + WR + + IN+A + L + Sbjct: 673 QFLPIAEEIGLMNKIGEWVMNTALEQLSFWRSRGL-IGFRLAINLAGDQITKQNLPMVVM 731 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++L E+ +M + E + +LR++G+ L+LDDFGT S LSYL Sbjct: 732 QALEHFQIPAEMLELEILETFLMEHEEEATSTFKQLRELGVHLSLDDFGTGYSALSYLKK 791 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P VK + SL+ AI +++I +A ++ T+ A+ + + L CD Sbjct: 792 LPITKVKIDQSLVRDIPEDPNDEAIAKAVILLAHTLDLTVCAEGVETRAQREFLESENCD 851 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLV 960 +Q + P+ N+ LLK+ L Sbjct: 852 QLQGYLFSKPIEANAFTNLLKKHNKLA 878 Score = 71.1 bits (173), Expect = 8e-10, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 6/156 (3%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW-----DWDIVRDRVTTTPDI 434 +L I ++ + SQ ER + + V D ++ + P I Sbjct: 170 LLEAAANIAGIVLNRFSSQENLQHKERLLENITQAMPGVVYQYHLDDELKQSFTYIGPGI 229 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 TI G+ + + + +H +DR + + +EFRV + Q HW Sbjct: 230 ETISGITAEAAIEDFSEFWEQVHPDDRSGLWASIVHTGKHGLA-WSHEFRVFHKNGQMHW 288 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + P + + L + GI DIT +K S+E + Sbjct: 289 VRGSALPSKLGSQEGLLWNGIILDITPEKASIEQLR 324 >gi|222098772|ref|YP_002532830.1| sensory box/ggdef family protein [Bacillus cereus Q1] gi|221242831|gb|ACM15541.1| sensory box/GGDEF family protein [Bacillus cereus Q1] Length = 909 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 174/856 (20%), Positives = 348/856 (40%), Gaps = 34/856 (3%) Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175 F L + + R+ D F ++P F + L I Sbjct: 66 RLFWAILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FFYL------LFLISF 114 Query: 176 WEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGY 231 Y+ N L + +I + A F +Y++ ++ I + + +V L Y Sbjct: 115 AFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHISSTSYIDIFVQLTY 174 Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFS 288 D F +NL L + L S+LI++ Y + + + T + Sbjct: 175 PMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIKYFTPEYSMFTIT 234 Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348 + + ++ + + + + ++ I + Sbjct: 235 PLYQVTLVLVAIACILHTKEPERQEQVLLTPKFGEAIRLSLPYISVVMLIVFILVEYVFA 294 Query: 349 IWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---GIFSD 403 + M + + +++ L+ + Q L T + ++ + Sbjct: 295 PIIVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELRTEDLVEQKNELYHN 354 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + D ++ D+ + + T+LG + + + + D + Sbjct: 355 QQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLTYEEDLEE 412 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + E R + +++ + P+ + I + DITE K Sbjct: 413 IVNAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESK 469 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + E I A+ D LT + NR++F + + S + VM +D+D++K IND L Sbjct: 470 QQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVMFLDLDRFKVINDTL 528 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L+++ +R+ + LARL+G+ F I++ + + A + ++ Sbjct: 529 GHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPDVKKIADTIVAAMNE 588 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P + + + ++ SIG A + + +L++A++AMY AK++G N + ++ Sbjct: 589 PFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNGSSLYTKELYKKM 648 Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I++DL LA+ N E YLVY P I + ++I+G EAL++W HP G+I EF+ I Sbjct: 649 ERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHPLLGDIPPCEFIPIV 708 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE + + ++L R + W + I +N+++K+ N L E + +I+ Sbjct: 709 EETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQNNLIENILQIITDV 767 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P + L +E + M + + + L +L++ GI ++DDFGT S L+YL P DT+ Sbjct: 768 KVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDTL 827 Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + AI+ +I+ +A + +++A+ I E +K L + C Y+Q + Sbjct: 828 KVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGYY 887 Query: 940 VASPLGFNSILKLLKE 955 + PL + +K L++ Sbjct: 888 FSKPLTSHQFIKFLQK 903 >gi|260902608|ref|ZP_05911003.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] gi|308109632|gb|EFO47172.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] Length = 811 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 141/552 (25%), Positives = 261/552 (47%), Gaps = 17/552 (3%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + + I G ++ + G N L H +D Sbjct: 267 QLSLASKIFNNSQEGMVITDSNANIIDVNNAFSQITGFSAEEVIGKNPNILRSGHHDD-- 324 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F L + + G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 325 AFYQQLWQQLETK-GQWKGEFINRKRDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR + L +++ + +DID +K IND Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQ-----PFATLFLDIDHFKHINDS 438 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F I+L + + + ++ Sbjct: 439 MGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGDSPLLETLSSILGVFR 498 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P +L + + ++ SIG A + + S +LKNA+ AMY AK G N + Sbjct: 499 RPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 558 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V I+ L A+E +L+LVY P L I+G+EAL++W+HP++G + ++F+ Sbjct: 559 KSVSHVRIQSALHEAIEKEQLHLVYQPQYNLAQNAIIGVEALVRWEHPEFGLVPPADFIP 618 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I+ I ++L+ W + I +N+++ L + ++ ++ Sbjct: 619 IAEKTGLIQNIGEWVLKDACLQGTDWLARGVQFG-KIAVNVSALQLQQSRFINKLKTILR 677 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + R++L +ES ++ +P+++ L +L ++GI ++LDDFGT S LSYL +P + Sbjct: 678 ETGFPAHRLELEITESFLLIDPKQAIASLNQLCELGIEISLDDFGTGYSSLSYLKGLPIN 737 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ + AI+ +II M + ++A+ I + L GC Y Q Sbjct: 738 KLKIDRSFVSDVPNDNDSNAIVNAIIAMGTTLSLKVVAEGIETPEQVAYLVDKGCIYGQG 797 Query: 938 SHVASPLGFNSI 949 + P+ + Sbjct: 798 YLFSPPVAAEKL 809 Score = 45.3 bits (106), Expect = 0.047, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%) Query: 421 WDIVRDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W D + + ++ + G + F V Sbjct: 160 WIKTTDGLYAMTNRSVEQAWKKSNDDIVGKND--FDLFSAERAEKFIDADRLVVATGTQN 217 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + E R +N W+ P+ N GD++ +G+ +IT ++K +E L A Sbjct: 218 IVEECRQIDENNNPTWLETIKSPVRNQAGDLIGILGMTRNIT-RRKMVETQLSLA 271 >gi|330976493|gb|EGH76544.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 639 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 147/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394 + + + + L + + Q + G L+ ++ F + A Sbjct: 14 LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGE 73 Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + D +R LA + + V D V I G + + G Sbjct: 74 ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133 Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + H L S G+ E R + + IR + +G Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQA 188 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ + +DIT K+S + + A D LT +PNR DR++ L + ++ Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALL 247 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 V+D+D ++ IND LG +GD+VL + R+ L +ARL G+ F +++ + + + Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLKALADSGMTVARLGGDEFALLVKNCTHMVH 307 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A A + + P + ++ V+ASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVSASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 367 Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + + RV + +L A+E +L + Y P+ L+ I +EAL++W HP Sbjct: 368 EGFALYTEELTAQAQQRVQLASELRQAIEQDQLRVFYQPVYDLVTGRICAVEALVRWQHP 427 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G +S +F+ IAE+ +I I+ ++L R + +W + + +N++S+ Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 486 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ + ++++T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT Sbjct: 487 GDVDRRVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L L +P +K + + G IAI+R++I +A ++ ++A+ I Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 606 Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949 L GC+ Q A P+ SI Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630 >gi|260220680|emb|CBA28474.1| hypothetical protein Csp_A07390 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 897 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 129/570 (22%), Positives = 249/570 (43%), Gaps = 16/570 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 Q I G + + D + D+ T ++G + + Sbjct: 324 RQIRQDRQAIEEAGLYRQAILDSMVDGLVTLDLNGRIHTFNNAACRMMGRDPEA--PRPQ 381 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + N + LD E R A+ + + + ++ D Sbjct: 382 TLSELLGTQLPLNVQGHLDLLSTVDGIEGASAEVNGRHANGAIRPISVSASRIPHTEHDT 441 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ DIT+Q++ E I AF D LTG+PNR+ +DR+ + SA +M Sbjct: 442 --FVVTLRDITQQRQDEEEIRRLAFYDPLTGLPNRRLLMDRVRQAMVNSARLGQ-HGALM 498 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN--- 626 +D+D +K +ND LG VGD++L + R+ ++ D +ARL G+ F ++L ++ Sbjct: 499 FLDLDHFKLLNDTLGHDVGDELLQQVAYRLRNCVREGDSVARLGGDEFVVLLEGLSDNRT 558 Query: 627 --SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + ++A+P +L T SIG + T ++LK A++AMY A Sbjct: 559 DAANQAEVVAHKILDALALPYSLRGHGYNSTPSIGIVVFMEDHETMDDLLKKADVAMYQA 618 Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F + + +++ L ++ E L Y I G EAL+ Sbjct: 619 KAAGRNTARFFDPVMQAAVTTHAELAKEIRLGLQRHEFVLHYQVQID-SQGRCTGAEALV 677 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+H G +S + F+ +AEE MI + +++E + ++ W + +N+++ Sbjct: 678 RWNHRVRGLVSPAHFIPLAEETGMILPLGEWVMESACQQLVEWSRNPMTAHWTLAVNVSA 737 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L E ++ + ++ ++KL +ES+++ + E + + ++++G+S +LDD Sbjct: 738 SQLAQPEFVASVREALQRSGAPAGQLKLELTESMLVDDVEDIIVKMMAIKELGVSFSLDD 797 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +P +K + S + + I R+++ + ++ T+IA+ + Sbjct: 798 FGTGYSSLSYLKRLPLSQLKIDQSFVRDVLTDPSDAVIARTVVALGHSLGLTVIAEGVET 857 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 L M CD Q + P ++++ Sbjct: 858 AEQRDALAAMQCDAFQGYYFGRPAPADALI 887 Score = 46.1 bits (108), Expect = 0.028, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIAT----ILGLASGSMHGPI--RNWLPYIHINDRDNF 464 + G ++ D + LG + + + L H D + F Sbjct: 44 LEGVPVPLFVKDTQGHVIYVNRTWRQSMAPALGGSPAAAVSDVLSAEQLASFHQRDLEAF 103 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQF--HWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + E + Q + + P+ +++G +G DITEQ Sbjct: 104 SA-------GTTVTHEDEV---KGNGQQSARHTLTTLVPLFDADGQPSLIVGSTVDITEQ 153 Query: 523 KKSLEGI 529 ++ + Sbjct: 154 RQLQQQN 160 >gi|229916945|ref|YP_002885591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Exiguobacterium sp. AT1b] gi|229468374|gb|ACQ70146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Exiguobacterium sp. AT1b] Length = 819 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 173/804 (21%), Positives = 303/804 (37%), Gaps = 46/804 (5%) Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV---NLPSGELL 251 I+ +A + + +R + WVV G S+ G + Sbjct: 26 ILSIAVAIFAAGVALDISSRLKYAKHASRLGWVVAGAFSLGLGIWAMHFIGMLAFHLNDD 85 Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHA--KVGYITFSGIACIAILFCMSFYYPMVTAS 309 + + LS + W H + + F + M + Sbjct: 86 VTYHLGIVLLSIVPAVVASGLAFWIISHPETRPIQLVFGAFLISVGVVSMHYIGMEAMQM 145 Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI---------FIWFIGLWMAITK 360 A +T ++ + + + + IP I M Sbjct: 146 NAILTYDPVMWVASAIVAFVASLVGLYILFYIPNVSRFHWRRLASSVLIGVAVSGMHYVG 205 Query: 361 RLDNDII---------------QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 L + V+ + + + Sbjct: 206 MGAARFTPMEGAAKPVSDYAVDSTLLAYVIAASVMTLFILMYISLRTASQLEAQSEELEL 265 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + + + D + D R + + G + M G + + I R+ Sbjct: 266 KFESIIESASDAIIVADHNRTILQWNQGATDLFGYTTDEMVGQ--SIVAIIPERFREAHE 323 Query: 466 TILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + R+ E D + + + G + + I DI+E+ Sbjct: 324 RGMRRYEATGEKRVIGQTVELIGLRKDGVEVPIEMSLGTWKTDKG--IFFSSIIRDISER 381 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K+ I + D LTG+PNR+ F DRL +L S ++ + ID+D +K IND Sbjct: 382 KRIEAQINDLVYLDPLTGLPNRRLFSDRLDALLGQSQSEQ---FALYYIDLDNFKVINDR 438 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G ++GD L +T RI ++ D LARL G+ F I+ ++L A + + Sbjct: 439 FGHSIGDQFLKQVTTRIQSTIQKTDTLARLGGDEFIILSPDTKSNLAAHR-AQELINVLH 497 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P L E+ ASIG + S T+ E++KNA++AMY AK G N + F S Sbjct: 498 PPFELENEEVFTGASIGISLHPSDGDTAEELIKNADIAMYRAKADGKNGYQFFTNELNES 557 Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + L + E + Y P I+L E ++G+EAL++W+HP+ G IS EF+ I Sbjct: 558 VSRRSNLSMALRKGIGRGEFTVHYQPQIQLETEMVIGMEALVRWNHPELGMISPGEFIPI 617 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE I + F+L R +W+D + PP + +NI++ +L E + ++ Sbjct: 618 AEETGSIHRLGEFVLNEACRQNKAWQDASI-PPFRVAVNISAVQFAQKDLPEVVSRALAA 676 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + ++L +ESV + + +R+ + L +G+ L++DDFGT S LSYL P DT Sbjct: 677 SGLEAQYLELELTESV-IQSADRAIETMHELVALGVHLSIDDFGTGYSSLSYLKLFPIDT 735 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + EK A++++II MA ++ +IA+ + E + L C+ Q Sbjct: 736 LKIDQHFTKNIESDEKDAALVKTIIRMAHELDLNVIAEGVETENQVAFLKAESCNQAQGY 795 Query: 939 HVASPLGFNSILKLLKERFPLVKN 962 PL I ++ + Sbjct: 796 FYNRPLPAEEIEVFFQQYKKASSS 819 >gi|171058297|ref|YP_001790646.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170775742|gb|ACB33881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 771 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 162/692 (23%), Positives = 301/692 (43%), Gaps = 23/692 (3%) Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335 R +V T + + A +F + + + +A+ L + G Sbjct: 55 RRQAGRVSTRTLTALIAHAGVFA-TLWGAVPGWMLAQANAGQHALLAGSLTGMLCIGGVT 113 Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH-VLATG 394 A + A+ + + L ++ + + A+ V++ G ++ V A Sbjct: 114 LAAVPAAAYAYLGGLSLSLIVSQFMQPSAQLGAGAVQWAGCAAVMVGGVLMMSRTVRARV 173 Query: 395 YFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 G+ L + D++W D + +A LG + G Sbjct: 174 QAEMQAEHQGQLIGLLLRDFGEQGSDLLWQIDERGCLSQVSRRLADALGRPLAELQGRPL 233 Query: 451 -----NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + DRD + + + + + Q W + +P+ N Sbjct: 234 LEVLTELQQGLSDIDRDATQMLQTCLIEGQ--PFRDVLMPMRVKGQPRWWSLTAKPLVNE 291 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G + + G+A D+T+ + + + A D LTG+ NR F L L + Sbjct: 292 RGVAMGWRGVARDVTQARMADRRMAWLAHFDTLTGLTNRAHFRVLLEAALQQA-RSPEQG 350 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 VM +D+D +K +ND LG GD +LV + RR+ + D++ RL G+ F ++L + Sbjct: 351 GAVMCLDLDHFKTVNDTLGHPTGDALLVEVARRLKAAVGPGDVVGRLGGDEFAVLLRNAA 410 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + +I+ A + ++ P L ++ V SIG A + + E++++A+LA+Y AK Sbjct: 411 DVQQISATAQRILDALREPCAALGAQVPVRLSIGIARFAQDGASVDELMQHADLALYDAK 470 Query: 686 HR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G + R+ R++++ DL A++ +L L Y P + L E+ G EAL++ Sbjct: 471 ASAPGSMKFFAPRMGEQVRRRLVLERDLREAIDKQQLSLHYQPKVDLQTWEVTGFEALLR 530 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP+ GNI SEF+ +AE+ +I I ++L + + W P+ + INI+ Sbjct: 531 WRHPEHGNIPPSEFIPVAEDSGLILPIGEWVLTQACQQAARWPA-----PMQVAINISPV 585 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 ++ L E + + + +P R++L +ESV + + L LRK+G+ + LDDF Sbjct: 586 QVMAQNLPEAVGRALKASGLAPRRLELEITESVFINETRGTVDRLHALRKVGVQIALDDF 645 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL PFDT+K + + + + AI+R+I+ +AK++ + +A+ + Sbjct: 646 GTGYSSLAYLRRFPFDTLKIDRAFVREVLLSRDARAIVRNILALAKSLRMSTVAEGVEEP 705 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L GCD +Q V+ P+ + + L Sbjct: 706 AQASVLGNEGCDLVQGFLVSRPMPADEVTGFL 737 >gi|66043357|ref|YP_233198.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63254064|gb|AAY35160.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 639 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 148/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394 + + + + L + + Q + G L+ ++ F + A Sbjct: 14 LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGE 73 Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + D +R LA + + V D V I G + + G Sbjct: 74 ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133 Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + H L S G+ E R + + IR + +G Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQP 188 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ + +DIT K+S + + A D LT +PNR DR++ L + ++ Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSRRGCALL 247 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 V+D+D ++ IND LG +GD+VL + R+ L ++RL G+ F +++ + + + Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHMVH 307 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A A + + P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 367 Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + + RV + +L A+E EL + Y P+ L+ I +EAL++W HP Sbjct: 368 EGFALYTEELTAQAQQRVQLASELRQAIEQDELRVFYQPVYDLVTGRICAVEALVRWQHP 427 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G +S +F+ IAE+ +I I+ ++L R + +W + + +N++S+ Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 486 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ + ++++T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT Sbjct: 487 GDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L L +P +K + + G IAI+R++I +A ++ ++A+ I Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 606 Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949 L GC+ Q A P+ SI Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630 >gi|229164297|ref|ZP_04292229.1| Sensory box protein [Bacillus cereus R309803] gi|228619180|gb|EEK76074.1| Sensory box protein [Bacillus cereus R309803] Length = 730 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 167/735 (22%), Positives = 316/735 (42%), Gaps = 36/735 (4%) Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308 +LI ++ + ++I + + A + T + LF ++ + Sbjct: 2 WVLIGYFVAQSLVIYAVISLYRREKYSSSRIALIIGFTIILVYGYVHLFRLNAGMKSSSE 61 Query: 309 SIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGLWMA 357 I ASI+L I+Y K ++ ++P + +I + Sbjct: 62 VSYLIHTASILLIGLSSILYILDKPIRHETKTKYYRFDYVRFILPYFSIII--TFAFIVL 119 Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL------------ATGYFSQGIFSDGE 405 +I L L+ + L + Q ++ + + + Sbjct: 120 QPWDDQFMLIGLVLSLILLFLRQLYMWKDNQALIDTYEKLTTQLEDEVEEGASALSKSEQ 179 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R D V+ ++ + ++ + + L +I D + + Sbjct: 180 RYKSLFEDHPDAVFSLNMNGIFQRSNQACESLF--TAYYCEVASYSLLHFIDPKDHELLK 237 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L R L E R + + ++++ I + P N +++ GIA DIT + Sbjct: 238 RALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEK 294 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + + AF D LTG+PNR+ F L +L + T N VM +D+D++KKIND LG Sbjct: 295 QKQVEHLAFHDALTGLPNRRKFEKDLKAMLTTAQTSAN-DIAVMFLDLDRFKKINDRLGH 353 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L+ + +R+ L+ DI+AR G+ F I+L + + A + + P Sbjct: 354 DVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFIAEQILTILNKPF 413 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 + + E+++T SIG A + +E++KNA++AMY AK G N F + Sbjct: 414 FIKDEELSITPSIGIAMYPDYGTNVTELMKNADMAMYCAKANGKNRFVFFSKEMSIAQNE 473 Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 474 SNFLEGELSKALQQNEFFLEYQPQVHTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEE 533 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 I + ++L + + W +Q + + +N++ +L + ++ +T Sbjct: 534 TGFIIELGNWILHKACSEAKKWHNQ-GFSHLKVGVNLSVVQFNHPDLISTISKVLEETKL 592 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P + + +ES+ + L L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 593 KPEALDIEITESIAINQNHSVVAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKI 652 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + G + AI+ SII ++K + +IA+ + E L CD+IQ + Sbjct: 653 AREFICGITNSPLEEAIIASIIKLSKELNLEVIAEGVETEEQWNFLRAQNCDHIQGFFFS 712 Query: 942 SPLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 713 KPVSNKDVWMLLHKK 727 >gi|256380853|ref|YP_003104513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Actinosynnema mirum DSM 43827] gi|255925156|gb|ACU40667.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Actinosynnema mirum DSM 43827] Length = 720 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 139/575 (24%), Positives = 262/575 (45%), Gaps = 14/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + A + + R + + D+ + + +LG M Sbjct: 151 LDARDQAEAALRASEARFRAMFTEAAIGIGIADVEGRILDVNQALQDMLGFGVEEMRQH- 209 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 N +H D + + D R + E R R AD + W + + + + +GD Sbjct: 210 -NIRDLMHPEDGPSVWRLYDQLTAGERDHYRAEKRFRRADGEQVWTHLTLSLVRDDHGDP 268 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + + D+T++ + A D LTG+PNR FLDRL+ + R + Sbjct: 269 QYQVAMIEDVTDRHLLQNRLRYQALHDPLTGLPNRALFLDRLSRVFGNPDKH---RAGLC 325 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSL 628 +D+D +K IND LG +GD +LV + RR+ + ++AR+ G+ F I++ + Sbjct: 326 YLDLDGFKVINDSLGHDIGDQLLVEVGRRLDRSVSGDGKLVARMGGDEFVILVEDSTRTD 385 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 I A + + + PI + E+TV+ASIG ++ +++++A++ +Y AK G Sbjct: 386 DIVAVADRVLRELESPIRIGGHELTVSASIGIVERGLEGTSAPDLVRDADITLYWAKADG 445 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 + + + + + A+E E Y+ Y P++RL + +VG+EAL++W H Sbjct: 446 KSRWALYDPDRNAKEIARFTLSATMPAALERDEFYVDYQPLVRLENARVVGVEALVRWQH 505 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P++G ++ F+ +AEE +I + ++L + W D+ ++ +N+A + Sbjct: 506 PEFGRLAPDRFIELAEETGLIVPLGRWVLRKACEQGRRWLDEFAELAPYVSVNLAVRQSR 565 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D EL ++ ++ +T P ++L +ES +MG + L L +G+ + +DDFGT Sbjct: 566 DPELVRDVKRILDETGLPPRHLQLELTESAIMGTADEPLEALRALSDMGVRIAIDDFGTG 625 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS------TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 S L+YL ++P +K GS M G I+ +++ +A + + A+ + Sbjct: 626 YSNLAYLKHLPVHELKIAGSFMEGLRAADEEDPVDAQIVSTLVQLAHALGLGVTAEGVET 685 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 K L R+GCD Q A P+ I ++L+ Sbjct: 686 PSQAKRLHRIGCDTGQGWFYAKPMAPEGIDEMLRR 720 >gi|217962838|ref|YP_002341416.1| sensory box/GGDEF family protein [Bacillus cereus AH187] gi|217065154|gb|ACJ79404.1| sensory box/GGDEF family protein [Bacillus cereus AH187] Length = 604 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 145/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 43 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 100 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L R L E R + + ++++ I + P N +++ G Sbjct: 101 FIDPKDHDLLQKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 157 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 158 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 216 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 217 RFKKINDRLGHGVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 276 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + + ++KNA++AMY AK G N Sbjct: 277 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFVF 336 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++++G EALI+W HPK G + Sbjct: 337 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIV 396 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 397 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 455 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 456 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 515 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 516 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 575 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 576 NCDHIQGFFISKPVSSKDVWRLLHKK 601 >gi|118581126|ref|YP_902376.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118503836|gb|ABL00319.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] Length = 629 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 139/488 (28%), Positives = 253/488 (51%), Gaps = 7/488 (1%) Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R Q E+R + ++ W++ + + + G LR +G DI E+K++ + + A Sbjct: 2 RDTYQVEYRRKTKTGEWKWILAYGKVVARDEAGAPLRMLGTIADIHERKQNEQQLAYLAT 61 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LTG+ +R DRL L + + V+++D+D++K IND LG GD++L + Sbjct: 62 HDELTGLASRALLYDRLEQSLYYARRSGRI-LAVLLLDLDRFKVINDSLGHEFGDNLLKA 120 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + R+ ++++ D AR G+ F I+L + + A + + + P + +E+TV Sbjct: 121 VALRLQQVIREGDTAARFGGDEFVILLAEVADPDDVGMLAGRILRCLEPPHLIDGKEVTV 180 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LC 712 +AS+G + + + +++NA++AMY AK GG F + ++ + L Sbjct: 181 SASLGISLFPRDSDDDATLIRNADIAMYRAKREGGGSFSFFSPEMNQRAMETLETENALR 240 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++ SE L Y P + L ++G EAL++W HP+ G + +EF+ +AEE +I + Sbjct: 241 QALDRSEFLLHYQPKVELATGRMIGCEALVRWLHPQRGMVPPNEFIPLAEETGLIVPLGN 300 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L R + +W+D+ P + + +N++++ +L + ++ T P ++L Sbjct: 301 WVLTEACRQVRAWQDERL-PIVSVAVNLSARQFRAGKLPWLVANVLLATGLDPCWLELEM 359 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +ES+VM NPER+ L+ L+ IG+ L++DDFGT S L+ L P D +K + S +T Sbjct: 360 TESLVMDNPERAIALMRELKDIGVRLSMDDFGTGYSSLASLSRFPIDYLKIDRSFVTDIV 419 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 I SII +A ++ +IA+ + E + L + GCD IQ + PL N Sbjct: 420 TNPHSATIAASIIDIAHRMQLQVIAEGVEAEAQLGYLRKHGCDQIQGYFFSRPLAANDFA 479 Query: 951 KLLKERFP 958 LL++ P Sbjct: 480 ALLRKNTP 487 >gi|119944290|ref|YP_941970.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] gi|119862894|gb|ABM02371.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 980 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 130/579 (22%), Positives = 271/579 (46%), Gaps = 9/579 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + + + + + + + +D+ ++ + + + +LG+ Sbjct: 402 FLLGISEDITERNAAKKALEESEHSLRESQRIARLGSYLFDLRSNQWSGSEILDNLLGID 461 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIR 500 + + W IH +DR V ++ E+R++ D W+ Sbjct: 462 AD-YQRTMEGWAQLIHPDDRSRIDHYFKEDVLNQKKSFNQEYRMKRQNDQAVRWVHGLGE 520 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 ++ G + G DITE+K + + A D LTG+PNR D++T + L+ Sbjct: 521 LEFDNQGSPILMKGTIQDITERKLAEAHLQALANFDQLTGLPNRFMLKDKITYLFTLARR 580 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + N T+M +D+D +K +ND LG +GD +L+ + +R+ ++ D+++R+ + F ++ Sbjct: 581 N-NESLTMMFLDLDHFKNVNDTLGHVIGDRLLIEIAKRLKSAIREVDLVSRIGSDEFILL 639 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + ++ + A + +++++P E+ +TA+IG A + + ++KNA+ A Sbjct: 640 FPN-TDADSALNIATKLIETVSLPTVFEHHELFITATIGIAIYPNDGEEFETLIKNADTA 698 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 M AK N F + +K + A+ +E+ + Y P I + I+G Sbjct: 699 MSQAKRYSRNTFHFFTEEMQVHLQRKLKIVNAMRHALLRNEMQVHYQPQISAVKGHIIGA 758 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP+ G+IS EF+ IAE I AI ++L + W+++ P+ + + Sbjct: 759 EALLRWRHPELGDISPGEFIPIAESSGQIVAIGEWVLRTAIDQMKVWQNEGLA-PMVVAV 817 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++ L + ++++K + ++L +E++ M +P+++ ++ +L GI + Sbjct: 818 NLSALQFKQANLIGMIISMLNKAQLAHQYLELELTEAITMDDPQQAINIMNQLHAKGIRM 877 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S LSYL +K + S + A++ +II MAKN+ IA+ Sbjct: 878 SIDDFGTGYSSLSYLKQFKVYKLKIDQSFICNLARDSDDRAMVHAIIDMAKNLGMQTIAE 937 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++ L GC+ IQ + + + + + K+ Sbjct: 938 GVETAEQLEFLRLHGCNEIQGYYFSKAIPADEFSRFAKQ 976 Score = 48.4 bits (114), Expect = 0.007, Method: Composition-based stats. Identities = 42/363 (11%), Positives = 104/363 (28%), Gaps = 32/363 (8%) Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS-------IDFGFLSKLVNLPSGEL 250 ++ ++A + R L + V + + + + V + Sbjct: 66 ISIIIAALIFAVGWTGRKRKLPGNIVLLASVFLGVGILDFSHILSYPGMPDYVTPSNPNK 125 Query: 251 LIWRACSE-IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309 I + I + L++F+ + + + + I +A I+ + P + Sbjct: 126 TIGFWLAARILSTIGLLLFVILPIRLSSFRFFRYLILSIILAATGIVHWLILMNPDFLSH 185 Query: 310 IARITLASIVLYYT-----------YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 + A + ++ + + + + Sbjct: 186 LFFTPQAGLSALKINTEYIIIGLTLITVLLLLQQMHRPQTYHASSLLTGLCIIAMSEFFF 245 Query: 359 TKRLDNDIIQ-----PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVL 412 T D I V + I I TVI+ ++ + +R + Sbjct: 246 TLYADLTDIYNISGHLYKVIAYLFIYRAIFITVIERPYHNLELAKTQLREKKRLLDDIIE 305 Query: 413 GSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 ++ D+ R++ + G + ++ G + D F Sbjct: 306 NIPTAIFLKDVNNLRLSLINKSTEKLFGHSRETILGQSDY--DFFPKEQADFFTNKDRET 363 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ---KKSLEG 528 + R E + + + +++ + + +GI+ DITE+ KK+LE Sbjct: 364 IERRTLLEIPEEIIDTPFGS-RTLYTKKIIITDEHNNPKFLLGISEDITERNAAKKALEE 422 Query: 529 ILC 531 Sbjct: 423 SEH 425 >gi|319761223|ref|YP_004125160.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317115784|gb|ADU98272.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 888 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 137/566 (24%), Positives = 266/566 (46%), Gaps = 15/566 (2%) Query: 400 IFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455 + + ERQ LA + + + V D ++ P + +LG + G R + Sbjct: 328 LRTAEERQRLASTVLDNAVEGVVVADAHARILSINPVVTRVLGYTEEELLGRNPRVFQSG 387 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D+ + T+ ++ R G Q E R + + + + + ++ G + Y+ + Sbjct: 388 RH--DKAFYETMWEAVR--RTGHWQGEIWNRRKNGEIFPERMSLSAVRDAQGAVTHYVCM 443 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+++K + + C + D+LTG+PNR F+++L L + + V+++++D+ Sbjct: 444 FSDISQEKAQHQRLECLSQCDSLTGLPNRAWFVEQLGQALCQAQVHGE-QMAVLLLNLDR 502 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G AVGD+VL +T ++ L+ D++ R++G+ ++ + +S A A Sbjct: 503 FKDVNDSYGHAVGDEVLRHITAQVCMSLRPGDLVGRMAGDEIAVLARNLRHSDGAAAVAQ 562 Query: 636 AMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 M + + P E+ S+G + + T+ ++L+ A A+Y AK RG Sbjct: 563 HMIAAASKPWRTPDGIEVVAGVSVGISMFPEHARTAEQLLQGAHSAVYGAKARGRGAHCF 622 Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F S +R+ I+ L A+ L L Y P + + IVG EAL++W P+ G I Sbjct: 623 FDESMIQAARERLEIEARLRSALAQGHLRLYYQPQVDIAMGRIVGAEALLRWLDPEEGVI 682 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S + F+ +AE +I + ++++ WR P I + +N++ ++ Sbjct: 683 SPARFISVAETSGVIGPLGRWVMQEACSQGQRWRAAGL-PGIRLAVNVSPYQFQLTDVAA 741 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + + P ++L +ES + PE R +L RL+ +G+ + +DDFGT S L++ Sbjct: 742 CAAQALEDSGLPPHCLELELTESALAERPEAMRQVLQRLQALGVRIAVDDFGTGYSSLAH 801 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + + + +AI +II M +++ T++A+ + + L Sbjct: 802 LKRFPIDALKIDQGFIRDIPSSADDMAISATIIAMGRSLGLTVLAEGVETPEQLAFLRAR 861 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GCD Q + P+ LL+ + Sbjct: 862 GCDSYQGYLCSRPVPAEQFGALLQAQ 887 Score = 97.7 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 2/151 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V+Q + + LA+ GSG +WDWD+ + R+T + + +L Sbjct: 192 LCVLQDMGEINAARAALARSENILRLALDGSGSGMWDWDLAQRRITGSQGLLRLLRYLGP 251 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + N L +H DR + + R++ D + W R + Sbjct: 252 EL-PRGLNLLRLVHPEDRHRLHRAVQRAIAA-GVSFDEAARLQRFDGSYCWFQARGQCHR 309 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++ G R+ GI D+T+ + + E + Sbjct: 310 DAQGRPERFSGILTDLTDLRTAEERQRLAST 340 >gi|229118797|ref|ZP_04248147.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] gi|228664667|gb|EEL20159.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] Length = 909 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 184/855 (21%), Positives = 341/855 (39%), Gaps = 30/855 (3%) Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIY 174 S F L + S R+ D F ++P + L Sbjct: 65 SRLFWIILSVGALSYFIGDIVVSYQRLILKDYYTF---VDPSDFFYLL------FLISFA 115 Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGYI 232 L + I + A F +Y++ ++ + T + +V L Y Sbjct: 116 LAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIEQTIHVFTTSYIDIFVQLTYP 175 Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFSG 289 D FL +NL L + L S+LI++ Y + + T + Sbjct: 176 MADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDAIYAYIKYFTPAYSMFTVTP 235 Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF- 348 + ++ + + + + ++ I A + Sbjct: 236 FYQVVLVLAAIACILHTKEPEKQEQVLLKPKFGESIRLSLPYISVVMLIIFILAEYVFAP 295 Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSDG 404 I IGL + T L + L+L + Q L T + ++ + Sbjct: 296 IVVIGLIITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTEDLVEQKNELYHNQ 355 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 + D ++ D+ + + T+LG + + + I+ D + Sbjct: 356 QMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEI 413 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + E R + +++ + P+ + I + DITE K+ Sbjct: 414 INAFHRVKKGN--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESKQ 470 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 E I A+ D LT + NR++F L + + VM +D+D++K IND LG Sbjct: 471 QQEQINFLAYHDTLTELANRRAFHQYLEKAIARAKIS-KSSFAVMFLDLDRFKVINDTLG 529 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 VGD +L+++ +R+ L LARL+G+ F I++ + + A + ++ P Sbjct: 530 HRVGDLLLIAVAKRLERLSTQHMKLARLAGDEFTILIENYKKRTDVKKIADMIVAAMNKP 589 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 + + + ++ SIG A + + +L++A++AMY AK++G N + ++ Sbjct: 590 FEIENQHLRISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKKIE 649 Query: 705 V--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 I++DL LA+ N E YLVY P I +I+G EALI+W HP G+IS EF+ I E Sbjct: 650 RKARIEKDLPLALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVE 709 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E + + ++L+ + W + I +N+++K+ N+L E + +++ Sbjct: 710 ETPQVVPLGHWVLKEACLQLKIWH-TFGYQNLKISVNLSAKEFQQNQLIENISQILNDVQ 768 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P + L +E + M N + + L +L++ GI +DDFGT S L+YL P DT+K Sbjct: 769 VDPKHVTLELTERIAMINEKETLSRLKQLKEYGIQTAIDDFGTGYSSLAYLSIFPIDTLK 828 Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + AI +I+ +A + ++IA+ I E +K L + C Y+Q + Sbjct: 829 VPREFTQLADHRPEERAIFSTILSLANTLNLSVIAEGIETEKQLKFLQKNNCKYMQGYYF 888 Query: 941 ASPLGFNSILKLLKE 955 + PL +K L++ Sbjct: 889 SKPLTSKQFIKFLQK 903 >gi|330941311|gb|EGH44171.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 628 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 147/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394 + + + + L + + Q + G L+ ++ F + A Sbjct: 3 LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGE 62 Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + D +R LA + + V D V I G + + G Sbjct: 63 ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 122 Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + H L S G+ E R + + IR + +G Sbjct: 123 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQA 177 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ + +DIT K+S + + A D LT +PNR DR++ L + ++ Sbjct: 178 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALL 236 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 V+D+D ++ IND LG +GD+VL + R+ L +ARL G+ F +++ + + + Sbjct: 237 VVDLDNFRNINDSLGHNIGDEVLKAAAERLKALADSGMTVARLGGDEFALLVKNCTHMVH 296 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A A + + P + ++ V+ASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 297 AAALAQQVINAFKAPYPIAGHQLFVSASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 356 Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + + RV + +L A+E +L + Y P+ L+ I +EAL++W HP Sbjct: 357 EGFALYTEELTAQAQQRVQLASELRQAIEQDQLRVFYQPVYDLVTGRICAVEALVRWQHP 416 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G +S +F+ IAE+ +I I+ ++L R + +W + + +N++S+ Sbjct: 417 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 475 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ + ++++T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT Sbjct: 476 GDVDRRVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 535 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L L +P +K + + G IAI+R++I +A ++ ++A+ I Sbjct: 536 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 595 Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949 L GC+ Q A P+ SI Sbjct: 596 FLLSNGCELGQGYWFARPMAAQSI 619 >gi|77920645|ref|YP_358460.1| sensory box-containing protein [Pelobacter carbinolicus DSM 2380] gi|77546728|gb|ABA90290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter carbinolicus DSM 2380] Length = 847 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 139/575 (24%), Positives = 261/575 (45%), Gaps = 10/575 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F + + + ++ + + + + D + +D R+ P + +LG Sbjct: 278 FCLCRDITERCEANKALLAREQDFRSLAENAPDAIVRYDRQLRRLYINPVLERLLGQDKA 337 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G D ++ L+ ++ E + D W R P Sbjct: 338 TLLGKP---FENHAPVDMTAYQDALEKTFQTGLQQVT-EVQYPLPDGTLGWFHARFEPEF 393 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + +GI DITE + E AF D LTG+PNR F R + + D Sbjct: 394 AEDATVKSVMGIVRDITELVEQRELAQHLAFTDMLTGLPNRALFEKRFKEAAAEAKSTD- 452 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++++D+D +K +ND LG GD++L +T R+ + D +AR+ G+ F I+L Sbjct: 453 CPFALLMLDLDHFKDVNDSLGHNCGDELLRQVTARLSHCVNECDTIARMGGDEFAILLAE 512 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 S + A + ++A P + +E+ ++ SIG A + E+ A+ AMY Sbjct: 513 SRGSDEAGQVADLILSTLAQPFFIESQELFISGSIGIAFFPHDSANLDELFTYADTAMYS 572 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AKH+G N+ + + R ++ + L A N EL L Y P ++L D +VG+EAL Sbjct: 573 AKHKGRNNFQCYDQELTRHVSAKLSLGASLRYACVNHELQLYYQPKVQLKDGRVVGVEAL 632 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP G ++ F+ IAEE +I I ++L+ + + + P + +N++ Sbjct: 633 LRWWHPVLGMLTPDRFISIAEETGLIVEIGEWVLKTACQAAVDFNR-NATAPFKVAVNLS 691 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L N+L ++A++ T ++ +ES+++ + + L LR +GI++ +D Sbjct: 692 CRQFLQNDLAATIEAILKTTGCRGEWLECEITESLMIEDNPQVAKTLEALRSLGITIAID 751 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P D +K + S + ++ +++ I + N+E I+A+ + Sbjct: 752 DFGTGYSALNYLSRFPIDVLKIDRSFINHIDTDPCKVGLVKVFIALGTNLEMQIVAEGVE 811 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L ++GC Q P F +++ L Sbjct: 812 TVSESASLQKLGCGLAQGYLFGKPQPFKALMATLS 846 Score = 55.3 bits (132), Expect = 5e-05, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 16/159 (10%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPD 433 + + L F V++ + Q + + L + S + D + P Sbjct: 144 IQWLDKLFVFCVVKDISQQKLQQQRLQQELTLWQLLMERSKGGIAVIDGETLKVLDVNPA 203 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRD--NFRTILDSFVGYRRGRLQ---YEFRVRAA 488 A +LG G M G +H + D R ++S + + +E ++ Sbjct: 204 FAEMLGYEPGEMLG--------MHPWEWDACRSRAQIESRAFSSQVSYEEYFFETIMKRK 255 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 D + + PM + + DITE+ ++ + Sbjct: 256 DGTLRNVEVNSLPMMVGDRK--HVFCLCRDITERCEANK 292 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 13/137 (9%) Query: 388 QHVLATGYFSQGIFSDGERQSLA-VLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSM 445 A S+G F + LA + S D + D V A +LG + + Sbjct: 33 ARDFAGSGVSEGTFQETGALHLAFMESSIDGIVIMDGASGGVVEANAAFAEMLGYSMEEL 92 Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMS 503 + +W D + L + ++E R R D Q + I + Sbjct: 93 RRLHVWDW-------DAQWSKDELRLIIANTGFSNQRFETRHRRKDGQILDVEISATKIQ 145 Query: 504 NSNGDILRYIGIANDIT 520 + L + DI+ Sbjct: 146 WLDK--LFVFCVVKDIS 160 >gi|325271650|ref|ZP_08138151.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] gi|324103222|gb|EGC00568.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] Length = 1098 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 140/583 (24%), Positives = 265/583 (45%), Gaps = 18/583 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441 T ++ + + S E+ + A S D + + R + + G + Sbjct: 515 SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITECNSGRYLEVNDGFCRLTGYS 574 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + G + I +D+ L + + R E R + + + Sbjct: 575 AAEVVGQTVYEI-GIWADDKQRG--ALLAELRERGRVHHREMLGRNKRGDILTVEVSVER 631 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 ++ ++ + A D+++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 632 ITL--NEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F ++L Sbjct: 690 -NLRGALLFLDLDHFKHINDSLGHPVGDAVLKIITARLEASVRLEDTVARLGGDEFVVLL 748 Query: 622 ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 ++ + A +R+ +A P++L + + VT SIG A T +++LK Sbjct: 749 SGLEGSRELVEAQVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKR 808 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N + F + S+R+ ++ DL LA+ EL L + P + D Sbjct: 809 ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792 IVG E L++W HP+ G ++F+ + EE +I + ++L+ Sbjct: 869 IVGAEVLLRWHHPQLGQQPPAQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 928 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + + +KL +E +V+ N E + + L+ Sbjct: 929 DFSLCVNISPRQFRQADFVGRVLRSLDDYRLPRKMLKLEITEGIVIQNLEDTISKMRELK 988 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 + G+S +DDFGT S L+YL +P D +K + S + + I+R+I+ MA++++ Sbjct: 989 RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDATVDPNDAEIVRAIVAMARSLD 1048 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + ++ L ++GC Q + PL ++L Sbjct: 1049 LAVIAEGVELTEQLEFLEQLGCYLYQGYLHSRPLPLAEFRQML 1091 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 56/157 (35%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 G+ L + + Q + ER LA+ + WDW I + + Sbjct: 250 TQGIELEGVTFLISTFVDTSERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 A + GL H + + +R++ R S G Q +RV+ + Sbjct: 310 ARAAQLHGLPPIPFHESFDAFFEGVPEQERNSMRQAYRSLREGPAGNYQITYRVQLENGV 369 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ R R + G+ LR G DIT+Q + + Sbjct: 370 SRYIESRARLYRDDQGNPLRMAGTLLDITDQVEREQR 406 Score = 94.2 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 1/128 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + + A+ G+ W WDI RV+ + + G ++L + Sbjct: 22 SEQAWQNAPQLLAALNGARLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADADYLDLL 81 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR R + + R+R D HW+ I + +G IG+ Sbjct: 82 PEEDRARTRQVFQAIFNGEPVERAMRHRIRWPDGSLHWLEINGSLTHDQHGRPQ-MIGVV 140 Query: 517 NDITEQKK 524 +IT Q++ Sbjct: 141 REITRQRE 148 Score = 44.6 bits (104), Expect = 0.085, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 50/178 (28%), Gaps = 23/178 (12%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442 V++ + + + +R + S + + + + G Sbjct: 137 IGVVREITRQREREAALINSEKRFATLFHLSPNAILLSRRHDGMIFEVNQHFEDMFGWPG 196 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G L ++ R + ++ +FR + + + Sbjct: 197 SQVIGKTSLELGLWVNPEQRQQVIESTRA--NGDPQIMEVQFRAISGKVHDGILCTQGIE 254 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I D +E+K++ A +D+ +RL LD + Sbjct: 255 LEG----VTFLISTFVDTSERKRAE-----QALKDS----------QERLDLALDSAQ 293 Score = 43.8 bits (102), Expect = 0.14, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 23/170 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + Q + + E+ + S D + + + P G +S Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQNFGWSS 450 Query: 443 GSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G W I + + I + V +I Sbjct: 451 EQVLGRTAEEIGLWAESI-----ERAQRIERVIREQALSNVAVV--VNHRSGAPLTCVIS 503 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539 R ++ + + DIT+Q+++ E AF D +T Sbjct: 504 SRLITVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551 >gi|221639437|ref|YP_002525699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodobacter sphaeroides KD131] gi|221160218|gb|ACM01198.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodobacter sphaeroides KD131] Length = 816 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 143/589 (24%), Positives = 256/589 (43%), Gaps = 21/589 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F +I+ V + + R + ++W D V + G + Sbjct: 228 FGIIEDVHERRTTVEQLRESEARFRAFADDAPVMIWVTDTEGRNVFVSRSWLGATGQSLD 287 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G W+ +H +DRD I + R EFR+R D + W+I P Sbjct: 288 EALGT--GWIDAVHPDDRDATAAITRDAMRRRIA-YTNEFRIRRKDGGWCWVIDVGHPRL 344 Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556 ++G + YIG DI+ ++++ + + A D LTG+PNR F D + Sbjct: 345 LADGTFIGYIGCCVDISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAV- 403 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 ++ V+++D+D +K +ND G VGD VL + R+ ++ D +ARL G+ Sbjct: 404 -ASLAPERSVAVLMLDLDGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDE 462 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +I + + D A + +I+ P +L V AS+G A ++ E+++ Sbjct: 463 FAVIQTPIRSEQEACDLARRLIAAISKPFDLEGAVPEVGASVGIAFARGRGDSAEEIMRY 522 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G F + R +K L A+ EL + Y P+I L D + Sbjct: 523 ADVALYAAKQAGRGTFRVFDEATDTHLQSRQKMKAALRAALGLGELSVFYQPLIGLRDGQ 582 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + EAL++W G I+ +F+ +AEE +I + ++L W D + Sbjct: 583 VTACEALMRWHRKGAGWITPDQFIPLAEEAGLIGDMGEWVLHEACAQAARWPDS-----V 637 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ L + + A + + P R++L +ESV++ +R+ +L LR + Sbjct: 638 SVAVNLSPLQFHGGALVDQVAAALRASGLPPERLQLEITESVLLDPTDRNIGVLQDLRSL 697 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912 G + +DDFGT S L YL PFD +K + S + + R AIL+++ + +++E Sbjct: 698 GAKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPDAREALAILKAVAGLGRSLEMR 757 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + + + + G D Q + PL I + P + Sbjct: 758 TTVEGVETQAQLDCAIAEGVDEAQGYFFSRPLPAPGIASFISGCLPKRR 806 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 10/168 (5%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 + G L+V T ++ + + + + Sbjct: 87 RRFLVSRRPAGEHLVVTFFEITDLRET------EGVLRQREAHLRNLLELHPVAPFSFTA 140 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + I GL +G+ + W +H DR + R V + E Sbjct: 141 DGVLSDLSDRLVAITGLPAGT--RHVDAWWAAMHPGDRRDLRRAWIRSVRGGQ-SFDAEH 197 Query: 484 RVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 R++ D + W R+ + + + R+ GI D+ E++ ++E + Sbjct: 198 RLQMPDGAYRWFRARVVARPRDQDQQVDRWFGIIEDVHERRTTVEQLR 245 >gi|218249057|ref|YP_002374428.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218169535|gb|ACK68272.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 726 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 145/644 (22%), Positives = 289/644 (44%), Gaps = 10/644 (1%) Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376 + G + +L+ + + +T + D + + Sbjct: 74 LPGFNGLQALKMLQEAGQKIPFILVTGSLGEEAAVECMKAGVTDYIVKDRLFQLPTILMR 133 Query: 377 LIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 + Q V+ ++ + + +R + + DI+ +P + Sbjct: 134 SLEEFALRREQQRVMEERRQAEIALRASEKRFRALIENASDIILIVAPDSQLTYASPSVE 193 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHW 494 +LG + S+ G + IH +++ D +L +FRVR + + Sbjct: 194 RVLGYDASSLTGQ--RFFDLIHPDEQGEIIGFFDKIKETSNLSQLLPDFRVRTQKDTWVI 251 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + R + + + + ++ +DITE+ ++ E + +A D LTG+ NR + L +L Sbjct: 252 LEAIARNLQD-DPAVGGFVVNCHDITERHQTAEQLRYDASHDKLTGLANRSALLKQLKRA 310 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 ++ ++ +D+D++K IND LG +GD +L + +R+ + D+LAR G Sbjct: 311 IEQKKRRKEDHFALLFLDLDRFKVINDGLGHLMGDQLLKEMAKRLQRCHREGDLLARFGG 370 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F L + A + +++ P L +E+ ++ASIG + +ML Sbjct: 371 DEFVFFLKEIRQQEQAIVVAERIHQALREPFILNHQEVFISASIGITLSADHYDSPEQML 430 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A+ AMY AK RG F + ++ ++ DL A++ EL + Y PI L Sbjct: 431 RDADTAMYWAKARGQGGHTIFAPTMHLSALKQLHLESDLRQAIQRQELVVYYQPIFSLDT 490 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 ++IVG EAL++W P+ I ++F+ +AEE +I I+ ++L+ + + W+ + Sbjct: 491 QKIVGAEALVRWQPPEKPLIPPNDFIPLAEETGLILEIDHWVLKSACQQLYQWQQEFKTL 550 Query: 793 -PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 P FI +N++ K L E + I +T + +K+ +E+V + N +L +L Sbjct: 551 APQFISVNLSPKQFSQPNLTEKIVQTIKETGLAEQCLKIEITETVFLENSTSVLEILCQL 610 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909 +++ I + LDDFGT S LSYL P +++K + + ++ + K I+R + +A + Sbjct: 611 QQLNIQICLDDFGTGYSSLSYLHQFPLNSLKLDRTFVSRLGKTNKNDTIVRIVATLANEL 670 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + +IA+ I I+ L +G + Q + P+ NS ++ L Sbjct: 671 DLELIAEGIEEIEQIQLLHYLGYQWGQGYCFSPPVDSNSFIEFL 714 >gi|81300525|ref|YP_400733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942] gi|81169406|gb|ABB57746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942] Length = 1238 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 152/623 (24%), Positives = 273/623 (43%), Gaps = 17/623 (2%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFS 402 + I + + Q ++ ++ + + A G I + Sbjct: 615 MASLSGAIANGFSTWSEQYRFLRQDGTYAHVLDRGYIVRDENGRAIRAVGAMQDISAIVA 674 Query: 403 DGERQSL---AVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 E+ L A+ +G+ + D + P I G ++ + G +L + Sbjct: 675 ANEQLRLWLRAIESTGNSIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGL 734 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + + + + R D W I + P+ + G + + Sbjct: 735 --ETQQAELEEMRRALEE-GTYCEVTLRSYRKDGSLFWNQISLAPVRDQKGHLTHMVASQ 791 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D++E K E +L A D LTG+PNR FLDRL + V+ ID+D + Sbjct: 792 TDVSESKAFEEMLLQQATHDALTGLPNRLLFLDRLDQAAARA-RGGGSPIAVLFIDLDNF 850 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND + GD VL R+ + ++ + +ARLS + F I+LI + K A Sbjct: 851 KAINDGFSHSEGDAVLQIAAGRLQQCIQEHETVARLSSDEFVILLIDLDVQSKARVKAAM 910 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 ++ +A P ++ I +TASIG A++ + SE+L+ A+LA+ AK +G N SF Sbjct: 911 IQSLMAKPFEVMGNPIELTASIGVATFPHDGQSGSELLQAADLAVCAAKQQGKNLWCSFS 970 Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R+ I++DL A+ ++ L L + P + L+ ++G E L++W+HP+ G ++ Sbjct: 971 EAMREQLRSRIDIEKDLRQALIDNSLELYFQPQVDLVTHRLLGFETLVRWNHPERGLVAP 1030 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ IAEE +I AI L+++ + W D + NI+++ + + + Sbjct: 1031 GEFIPIAEESDLIDAIGLWVMRAAGLTLRRWIDHEGFTG-SLSFNISARQFIRQNIFLKL 1089 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ + P ++++ +ES ++ +PER L R +G + LDDFGT S L YL Sbjct: 1090 FDVLQEFQIPPHQLEIELTESSLIESPERFVQWLQEARSMGFQVALDDFGTGYSSLGYLK 1149 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P + +K + S + AI+++I+ MAK ++ IA+ + L +GC Sbjct: 1150 RLPINALKIDRSFIRDLPHDHDDQAIVQAIVAMAKVLKLRTIAEGVERLEQAAFLEAIGC 1209 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 D +Q PL L L Sbjct: 1210 DAVQGFFYGPPLPEAEALAFLHR 1232 Score = 99.3 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 5/149 (3%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + Q + ER L + D VWD +++ + + + + + + G + Sbjct: 532 FRDISDRVMSRQLLEEMAERFQLVTRATNDAVWDRNLLTNEIWYSANYSRLFGGEEKEIT 591 Query: 447 GPI-----RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + W + + R+ L + ++R D + ++ R Sbjct: 592 QKLVQTVDLQWRDRLDPDQRERIMASLSGAIANGFSTWSEQYRFLRQDGTYAHVLDRGYI 651 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 + + NG +R +G DI+ + E + Sbjct: 652 VRDENGRAIRAVGAMQDISAIVAANEQLR 680 Score = 48.0 bits (113), Expect = 0.008, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 1/101 (0%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W+ D+ V T+P + +LG S + WL + ++DR +D+ + R Sbjct: 199 GYWELDVQSQLVQTSPLVNRLLGKPSDQCLFSWQQWLEHFQLSDRLRLEQAIDTGMQTGR 258 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +Q + + + + +R + + G++ G+ Sbjct: 259 -PIQATYALASDSQDRQLVELRAVIVRDLAGNVRSLRGVLE 298 >gi|88858416|ref|ZP_01133058.1| hypothetical protein PTD2_13539 [Pseudoalteromonas tunicata D2] gi|88820033|gb|EAR29846.1| hypothetical protein PTD2_13539 [Pseudoalteromonas tunicata D2] Length = 847 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 147/571 (25%), Positives = 286/571 (50%), Gaps = 12/571 (2%) Query: 393 TGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 +Q + + + LA + S D V D P T+ G ++ + G Sbjct: 268 LSQRNQALKTSQKNLFLAKQIINASLDGVMITDNKGTIFQVNPAFTTLTGYSAEDVVGQT 327 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + L + F + + R Q E + + + + + I + + D Sbjct: 328 PSLLSSGKHD--KIFYDHMWQCLR-REHMWQGEIWNKKKNGEVYLEWLTIIEIKEPDDDE 384 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 L Y I +DITE+KK+ + I+ A+ D LT +PNR+ F DRL L + D N + VM Sbjct: 385 LLYAAIFSDITERKKAEKRIISLAYFDELTHLPNRRLFSDRLEMALATAHRD-NSKLAVM 443 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +K+IND +G VGD +L + R+ ++ D LARL G+ F +++ ++ + Sbjct: 444 FLDLDHFKQINDTMGHNVGDILLRQVAERLQACVREGDTLARLGGDEFTLLITEISDVEQ 503 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + FA + + P L ++++T SIG A + I S +LK+A++AMY +K G Sbjct: 504 LTIFAHKLIHQLQAPFKLNGLDVSITTSIGAAVYPDDGIDSQSLLKHADVAMYRSKDLGR 563 Query: 690 NHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ +++ +R+ ++ A+ +E L + P I + + GLEAL++W P Sbjct: 564 NSFQLYKPAMNARSLERLAMESKFKKALRTNEFKLCFQPQIDAKHQRLTGLEALVRWQSP 623 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G+IS ++F+ +AE L +I ++++++ + + I W D+ +P + IN+++ Sbjct: 624 ELGSISPAQFIPLAENLGLIVELDIWVINKACQQIRLWLDE-GVPFAKVSINVSALHFSQ 682 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L +Q + P +++ +E+ + + ++ +L L+K+G+ + LDDFGT Sbjct: 683 GNLVLAVQNALHYWHVDPHWVEIEITETSFISSLPEAKKVLTNLKKLGVKIALDDFGTGY 742 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL +P DTVK + S + ++ I+ +II +AK++ ++A+ + ++ Sbjct: 743 SALSYLTQLPIDTVKIDASFIAKVPDEYGNSQIVTAIIALAKSLRLGLVAEGVEKAAQLR 802 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L ++ C IQ + + PL ++ + ++ Sbjct: 803 FLEQLECYVIQGFYFSKPLYPCEYVRFIAQK 833 >gi|157376469|ref|YP_001475069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] gi|157318843|gb|ABV37941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] Length = 1020 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 144/556 (25%), Positives = 249/556 (44%), Gaps = 12/556 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + + S + + D + + +T I G G + L + Sbjct: 453 ESLQLAASVYNNSSEAMSVQDSLGNIITINSAFTDITGYLEGEVLSKHIRILEC---DRT 509 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + GR Q E ++ + + I + ++ G++ R + + +DITE Sbjct: 510 SKNQYEQMNMQITQTGRWQGEVWLKHKSGTEFIVWLTINTILDNKGEVYRRVALFSDITE 569 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K++ I A D LTG+PNR+ L+ L T L S + +M +D+D +K++ND Sbjct: 570 KKQAEHIIWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKK-HFALMFLDLDYFKEVND 628 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG +GD +LV +R+ ++ D++ARL G+ F ++L + + + A + + Sbjct: 629 SLGHDIGDLLLVETAKRLKGCIRESDVVARLGGDEFTVVLSAIQDHKGVERVAENILSRL 688 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 A P NL ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 689 AEPFNLDNESAYISASIGITLYPDDASSIDGLLKHADQAMYAAKEQGRNRYHYFTPSMQE 748 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 R+++ DL A+ E + Y PII L D ++ EALI+W HP G +S EF+ Sbjct: 749 YAKYRMLLIRDLRKAIIRKEFEIYYQPIIELTDSKVFKAEALIRWHHPVRGVVSPGEFIP 808 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEGMQAL 817 +AEE +I I ++ E+ A+ WR++ I I IN + D + ++ Sbjct: 809 VAEETGLIIEIGNWVFEQAAKQSAMWRERFG-VAIQISINKSPIQFRDEGESFVDWIEQ- 866 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + K + I + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 867 LKKLNLESNGICVEITEGLLLDASMGVSEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFD 926 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + + +II MA + +IA+ + E K L GCDY Sbjct: 927 IDYLKIDQSFTRNLETDSNDVTLCEAIIVMAHKLGMKVIAEGVETEYQKKILFEAGCDYG 986 Query: 936 QDSHVASPLGFNSILK 951 Q + P+ Sbjct: 987 QGYLFSKPIPVADFEA 1002 Score = 118 bits (296), Expect = 5e-24, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 1/153 (0%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + + + + E+ +L + S +WDWD+ D+V A +LG Sbjct: 307 LVIAGLLDITSQKQAESAMSKSQEQLALVLDSSELGLWDWDLKSDKVDRNDYCAKLLGSG 366 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 ++ R W+ IH DR +D + + E+R+ + W++ R + Sbjct: 367 VEELNDDGRLWINAIHPQDRLEVLHAMDKHLKGENPQYTVEYRLNTFSGETRWILDRGKV 426 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 ++NG LR G DIT++K+ E + A Sbjct: 427 ASKDANGAPLRVCGTNTDITDRKRGEESLQLAA 459 Score = 71.9 bits (175), Expect = 6e-10, Method: Composition-based stats. Identities = 41/340 (12%), Positives = 93/340 (27%), Gaps = 47/340 (13%) Query: 203 AIFLTIFYM---VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEI 259 A+ L + ++ V R F V I ++ I Sbjct: 14 ALLLAMVFVYDAVPRKQRHEYFFLWRISVGTVIGGITVTTMMTHWEYQP--GVFFDARSI 71 Query: 260 ALSSSLIIF-------------LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 L S + F ++ +L + I +L S++ Sbjct: 72 ILGISGLFFGGLPTFVAMVIASVYRFLE----GGSGWWAGIGIIFSSGLL--GSYWRYYR 125 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + IA ++ + + ++ +W L + + + I Sbjct: 126 KSFIADLSFKELYAFGFIL------------------QVITLLWMFVLPFEMAISILSRI 167 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 PAL+ + V+L + + Q D + + + Sbjct: 168 SFPALIVYPIAFVLLGLLLSRRLEIERDAKIQ--LQDDFIFRSQFNVGNIGIAISSVDQH 225 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + P + +L + ++ W + +D + + + + + R Sbjct: 226 WIKVNPRMCQMLQYTEEELL--LKTWAEMTYFDDLQTDLNLFNRMLDGEFDEYEMDKRYV 283 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 A D + + + N + I DIT QK++ Sbjct: 284 AKDGSIVYTHLTVACQR-VNNQVQLVIAGLLDITSQKQAE 322 >gi|86749282|ref|YP_485778.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86572310|gb|ABD06867.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 818 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 137/560 (24%), Positives = 259/560 (46%), Gaps = 17/560 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + E L G+ +W +D + G + +R L I Sbjct: 260 SLKKREESFRLLFDGNPMPMWVFDAATTEFLNVNDAAVQHYGYDRDAF---LRMTLREIW 316 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 D + L + +R AD ++ R + ++ + ++ Sbjct: 317 PRD-EWAAHSLALLQVGDSYQSGGNWRHLKADGTEIQVMTFGRRVVFNDRE--GFLVAVV 373 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+TE++K+ I A D LT +PNR + +RL L+ + R V+ ID+D +K Sbjct: 374 DVTERRKAEAKIAHMAHHDGLTNLPNRALYQERLQQALEQA-RGGGGRVAVLCIDLDLFK 432 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND G +GD +L + R+ + D++ARL G+ F ++L S + + +D A + Sbjct: 433 NVNDSFGHPMGDRLLRCVADRLRAQIGGNDLVARLGGDEFAVVLASVASPNEASDVAARL 492 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + ++ P ++ E+ + ASIG A ++++A++A+Y AK GG F Sbjct: 493 IELVSAPYDMDGLEVVIGASIGIALAPGDGDDCDVLMRSADMALYRAKAAGGGCHHFFEK 552 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 R + ++ DL A E L Y P+I L ++ + G EAL++W HP+ G +S + Sbjct: 553 EMDRQAQRRRDMERDLRHAFARGEFDLHYQPLIDLAEDRVSGFEALLRWHHPERGMVSPA 612 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ IAE++ +I + ++L + + W + + I +N++ L + + Sbjct: 613 DFIPIAEDIGLIVGLGEWVLRQACLEAARWPN-----DVKIAVNLSPVQFRSRNLVQVVI 667 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++++ SP R++L +ES+ + + E + L +LR +G+ +++DDFGT S LSYL Sbjct: 668 SALAQSGLSPRRLELEITESLFLADSEANLATLHQLRSLGVRISMDDFGTGYSSLSYLRS 727 Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + T +AI+R+I + +++ T +A+ + + L GC Sbjct: 728 FPFDKIKIDRSFVKDLTERPDCLAIVRAIAGLGRSLNITTLAEGVETVEQLDALRAEGCH 787 Query: 934 YIQDSHVASPLGFNSILKLL 953 +Q + I LL Sbjct: 788 EVQGFLFSPARPAAEIAGLL 807 >gi|157373187|ref|YP_001471787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sediminis HAW-EB3] gi|157315561|gb|ABV34659.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sediminis HAW-EB3] Length = 836 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 142/570 (24%), Positives = 276/570 (48%), Gaps = 16/570 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + +R AV S + +WDW+++ D V + +LG S + ++ W + Sbjct: 262 EKQLNDSQQRWLFAVEVSRNGIWDWNLITDEVFLSDRWKEMLGYHSDELKDELKTWQAML 321 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGI 515 H D+ L ++ + R++ + W++ R + +S G +R IG Sbjct: 322 HPEDKAEALNTLHKYLNGEVEEFESVHRLKHKSGHYIWVLDRGMIVDWDSKGRPVRMIGT 381 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D+++ ++ + I+ D LT + NR++ LD L I + + VID+D Sbjct: 382 HTDVSDDVRNQQAIMHQINHDLLTDLANRRALLDELYRI---KEQKQSGSVALFVIDLDN 438 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA---- 631 +K IND LG GD +L+ + R+ ++ARLS + F I+ ++ +A Sbjct: 439 FKMINDALGHHHGDRLLIQVAARLSSYFSNNALIARLSADEFVILAQGLSDDQSVAKRRT 498 Query: 632 -DFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGG 689 A +R+ I ++ + + ++AS+G S I ++L++A+LAM+ AK +G Sbjct: 499 MALASQIRQMIGRSFHINNQTLNISASVGICVLDKLSDIDPEQVLQHADLAMHQAKEQGR 558 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + + R + ++IK +L A+E ++L LVY PI+ + EI+ EAL++W HP Sbjct: 559 DAHVVYSADMERVAQNSLLIKSELKNAIELNQLSLVYQPIVD-REGEIICAEALLRWQHP 617 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + GNI S F+ +AE +I+ I ++L + I + + I IN++++ Sbjct: 618 EKGNIPPSSFIPVAEGSELIQDIGHWVLSETCQYIKRLQGEDVELG-SIAINVSARQFNH 676 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ E + +I + I+L +E ++ N + R + L++ GIS+ +DDFGT Sbjct: 677 DDFVESLLGVIRQQGLGAGSIELELTEYALLTNLDIIRQRMEVLKEAGISIAIDDFGTGY 736 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL +P +K + + ++ + +I+ +II MA ++ ++A+ + + + Sbjct: 737 SSLSYLQSLPLSRLKLDAAFVSQIGVNDASNSIVIAIINMAHSLNLQVVAEGVETQQQYE 796 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + CD Q PL ++ ++ +K Sbjct: 797 FLLQHDCDTFQGYLFNRPLTADNFIRAVKS 826 >gi|254459398|ref|ZP_05072819.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales bacterium GD 1] gi|207084011|gb|EDZ61302.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales bacterium GD 1] Length = 835 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 148/571 (25%), Positives = 270/571 (47%), Gaps = 12/571 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + + + + A + W D+ + ++ + + I G+ G+ Sbjct: 271 EDLDESRKREEELQKKETAMNEAQSIARVGSWSIDLKTNTLSWSNECYNIFGIEHGTQM- 329 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 ++ IH +D++N D + + + E RV + W+ + + + + +G Sbjct: 330 NYELFVEMIHKDDKENALLAWDEALKG--AKFEIEHRVIVGS-ETKWVREKAKFVIDEDG 386 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 I+ IG DITE+K+ + A D LTG NR L ++ ++ + Sbjct: 387 TIVSGIGTVQDITERKQYENKLERLANFDTLTGFANRTFLFSYLQKVVHRCKRNNKI-AA 445 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++V+D+D +K IND G +GD++L + +R+ ++ D +ARL G++F IIL NNS Sbjct: 446 LLVLDMDHFKDINDSYGHDIGDELLALIAKRLSTRIRGGDFIARLDGDKFAIILEDINNS 505 Query: 628 LKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A FA + + + P L E+ + ++ G + T+ E+++ A+ A+Y K Sbjct: 506 DDAAMFAKEIMEEVEKPFYLSNTSEVHICSTAGIVIAPENAETAEELIQFADTALYKGKK 565 Query: 687 --RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 RGG S ++ + + L A+E+SE L Y P + + + IVG EALI+W Sbjct: 566 DKRGGISYYSDELTELAKKHIELATRLRRAIEHSEFELYYQPQVHIKSKRIVGAEALIRW 625 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 + P G IS ++F+ +AEE +I AI +++ R W D+ + I +N+++ Sbjct: 626 NDPIHGLISPNDFIPLAEETGLIGAIGEWVIRDACRQGKLWIDKGYN--LSISVNVSANQ 683 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L + + + + +T ++ ++ + +ES VM E + +L +R GI L +DDFG Sbjct: 684 LRHQNITRLIDSTLKETGFTADKLVIELTESAVMQREEEAVAMLHAIRAKGIRLAIDDFG 743 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S SYL P D +K + S + +AI+++II M + I+A+ Sbjct: 744 TGYSSYSYLKRFPIDILKIDKSFIDEVPFENDDMAIVKAIIAMGSALGYKILAEGTEHIE 803 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I L GC Y Q + + PL + KLL Sbjct: 804 QIDFLEEHGCQYYQGYYKSKPLKTSEFEKLL 834 >gi|313200984|ref|YP_004039642.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312440300|gb|ADQ84406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 869 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 142/563 (25%), Positives = 248/563 (44%), Gaps = 11/563 (1%) Query: 398 QGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + D R + L S + + D ++ P + G + + G L Sbjct: 311 RKVAEDKMRLATLVFENSSEAIMVVDAESQILSVNPAFTEMTGYTAQEVVGKTPKILAS- 369 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR + + + G+ Q E R + + + + I + N +G+++R + + Sbjct: 370 GKQDRKFYEEMW--HLLDSNGKWQGEVWNRRKNGESYAEWLTIDTIYNEHGEVIRRVALF 427 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT+ K++ E I A D LTG+PNR+ DRL + + + + V+ +D+D++ Sbjct: 428 SDITKNKQNQEVIWRQANFDQLTGLPNRRMLHDRLNQEILKADRNHQM-LAVLFLDLDRF 486 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND G +GD +L R+ ++ D +ARL G+ F +IL + + D A + Sbjct: 487 KEVNDTYGHLMGDQLLQESAHRLLHSVRECDTVARLGGDEFVVILSGLQDKDVVQDIAQS 546 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + K P L V+ SIG + + KNA+ AMY AK+ G N F Sbjct: 547 ILKKFDTPFQLDNDLTHVSVSIGITIYPEDGNAGEVLFKNADQAMYVAKNNGRNRYSYFT 606 Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 S +R+ + DL LA+ + L Y PI+ L ++ EAL++W HP G I Sbjct: 607 ASMQAHAQNRMRLSNDLHLALPGQQFELYYQPIVELATGQVHKAEALLRWQHPTRGMIPP 666 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEG 813 F+ +AEE +I I ++ AR + + + I IN + + E Sbjct: 667 DNFIPLAEETGLIVDIGNWVFYEAARQVKRLQS-LHHASFQISINKSPVQFHNETHGHEA 725 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + + I + +E ++M E L R G+ + LDDFGT S LSYL Sbjct: 726 WISFLLMNDLPRQSIVVEITEGLLMHTDESISAQLLGFRDAGVQVALDDFGTGYSSLSYL 785 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 D +K + + + +A+ +I+ MA ++ +IA+ I E + L ++G Sbjct: 786 KKFDIDYLKIDRIFVRNLSRNSSDMALCEAIVMMAHKLDIKVIAEGIETEEQRELLQQIG 845 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 CD+ Q + PL + L+ Sbjct: 846 CDFGQGYLFSPPLPAPAFEAYLR 868 Score = 63.8 bits (154), Expect = 2e-07, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 52/146 (35%), Gaps = 3/146 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +++ + + + + + + W++D+ + T ++A I G+ Sbjct: 177 AIVRDITERLRVVEKLRESEQLLAHMSAIAHIGGWEFDVETGIGSWTREVAHIHGVEFKD 236 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + L + R+ + + + + E + A W+ P Sbjct: 237 -NISAEFGLGFYEAESREKIEAAIQQAIDHGK-PYDLELELVTARGIRKWVRTVCTPHI- 293 Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530 +G +L+ G DI+++K + + + Sbjct: 294 IDGRVLKLQGSFQDISDRKVAEDKMR 319 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 13/198 (6%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 Y + + + +W + + L L+ IL+ ++ H++ Sbjct: 9 RYAAIRIPLIYCVFAVLWIMASDQILALLLPEAASITHFQTLKGLLFILLTAALLYHLI- 67 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 Q + + R + + + D + +D V + G M Sbjct: 68 ---HRQQLLAS--RYNSLTVHANDSILLFDHQGKLVDANDRALRMYGYTREQMQHIHA-- 120 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + + ++R+ + + + E + AD + + + G Sbjct: 121 -RQLLPDATSDWRSCFLAEAQHNGIIFESEH--KHADGSTFSVEVSACLLKI--GGSDYI 175 Query: 513 IGIANDITEQKKSLEGIL 530 I DITE+ + +E + Sbjct: 176 QAIVRDITERLRVVEKLR 193 >gi|253998885|ref|YP_003050948.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253985564|gb|ACT50421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 869 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 142/563 (25%), Positives = 248/563 (44%), Gaps = 11/563 (1%) Query: 398 QGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + D R + L S + + D ++ P + G + + G L Sbjct: 311 RKVAEDKMRLATLVFENSSEAIMVVDAESQILSVNPAFTEMTGYTAQEVVGKTPKILAS- 369 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR + + + G+ Q E R + + + + I + N +G+++R + + Sbjct: 370 GKQDRKFYEEMW--HLLDSNGKWQGEVWNRRKNGESYAEWLTIDTIYNEHGEVIRRVALF 427 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT+ K++ E I A D LTG+PNR+ DRL + + + + V+ +D+D++ Sbjct: 428 SDITKNKQNQEVIWRQANFDQLTGLPNRRMLHDRLNQEILKADRNHQM-LAVLFLDLDRF 486 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND G +GD +L R+ ++ D +ARL G+ F +IL + + D A + Sbjct: 487 KEVNDTYGHLMGDQLLQESAHRLLHSVRECDTVARLGGDEFVVILSGLQDKDVVQDIAQS 546 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + K P L V+ SIG + + KNA+ AMY AK+ G N F Sbjct: 547 ILKKFDTPFQLDNDLTHVSVSIGITIYPEDGNAGEVLFKNADQAMYVAKNNGRNRYSYFT 606 Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 S +R+ + DL LA+ + L Y PI+ L ++ EAL++W HP G I Sbjct: 607 ASMQAHAQNRMRLSNDLHLALPGQQFELYYQPIVELATGQVHKAEALLRWQHPTRGMIPP 666 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEG 813 F+ +AEE +I I ++ AR + + + I IN + + E Sbjct: 667 DNFIPLAEETGLIVDIGNWVFYEAARQVKRLQS-LHHASFQISINKSPVQFHNETHGHEA 725 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + + I + +E ++M E L R G+ + LDDFGT S LSYL Sbjct: 726 WISFLLMNDLPRQSIVVEITEGLLMHTDESISAQLLGFRDAGVQVALDDFGTGYSSLSYL 785 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 D +K + + + +A+ +I+ MA ++ +IA+ I E + L ++G Sbjct: 786 KKFDIDYLKIDRIFVRNLSRNSSDMALCEAIVMMAHKLDIKVIAEGIETEEQRELLQQIG 845 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 CD+ Q + PL + L+ Sbjct: 846 CDFGQGYLFSPPLPAPAFEAYLR 868 Score = 63.8 bits (154), Expect = 2e-07, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 52/146 (35%), Gaps = 3/146 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +++ + + + + + + W++D+ + T ++A I G+ Sbjct: 177 AIVRDITERLRVVEKLRESEQLLAHMSAIAHIGGWEFDVETGIGSWTREVAHIHGVEFKD 236 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + L + R+ + + + + E + A W+ P Sbjct: 237 -NISAEFGLGFYEAESREKIEAAIQQAIDHGK-PYDLELELVTARGIRKWVRTVCTPHI- 293 Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530 +G +L+ G DI+++K + + + Sbjct: 294 IDGRVLKLQGSFQDISDRKVAEDKMR 319 Score = 58.8 bits (141), Expect = 5e-06, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 13/198 (6%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 Y + + + +W + + L L+ IL+ ++ H++ Sbjct: 9 RYAAIRIPLIYCVFAVLWIMASDQTLALLLPEAASITHFQTLKGLLFILLTAALLYHLI- 67 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 Q + + R + + + D + +D V + G M Sbjct: 68 ---HRQQLLAS--RYNSLTVHANDSILLFDHQGKLVDANDRALRMYGYTRDQMQHIHA-- 120 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + + ++R+ + + + E + AD + + + G Sbjct: 121 -RQLLPDAASDWRSCFLAEAQHNGIIFESEH--KHADGSTFSVEVSACLLKI--GGSDYI 175 Query: 513 IGIANDITEQKKSLEGIL 530 I DITE+ + +E + Sbjct: 176 QAIVRDITERLRVVEKLR 193 >gi|119773284|ref|YP_926024.1| sensory box protein [Shewanella amazonensis SB2B] gi|119765784|gb|ABL98354.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella amazonensis SB2B] Length = 1069 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 140/563 (24%), Positives = 264/563 (46%), Gaps = 12/563 (2%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 R + S + + D P + I G + + G + L H N Sbjct: 501 RQALVRAAAVFEYSAEGIMVTDADNHIELINPAFSQITGYSIEEVKGRNPSILSS-HRNP 559 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + +S G+ + E R D + + + I + + G I+ +IG+ DI+ Sbjct: 560 PHLYDAMWESLRS--TGKWEGEIWNRRKDGEVYPEYLAITLVRDDEGQIVHHIGLFMDIS 617 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 +K+ + I A D LT +PNR+ +RL L ++ D + VMV+D+D++K IN Sbjct: 618 RRKQYEQDIWYKANFDTLTDLPNRKLLSERLGHELKMAEHDGR-KLAVMVLDLDRFKYIN 676 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G GD +L ++ +R+ ++ D +ARL G+ F I+L + +A + +S Sbjct: 677 DTQGHDCGDLLLKAVAKRLQTVMGSTDFIARLGGDEFVIVLPRLAQEHAVEQYAKRLLQS 736 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P + + ++V+AS+G + + +L NAE AMY AK G NH + F Sbjct: 737 MGDPFKVEQGSMSVSASLGIGLYPQDGLDVETLLSNAETAMYGAKDEGRNHFKYFTQEMN 796 Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + + DL AV N E L Y P++ + E+ LEAL++W P+ G +S F+ Sbjct: 797 LALIERLGMERDLRRAVANDEFCLFYQPVVDMESGEVTSLEALLRWQDPEQGLVSPVRFI 856 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELCEGMQA 816 +AE++ ++ + +++++ D+ + + IN+++ L E +++ Sbjct: 857 PVAEDMGLMGELGQWVMDKALADLARLHTLGFG--LSMAINVSACQCHCKRQSLDEQLRS 914 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 +S+ +P + + +ES+++ N L +R +G ++ LDDFGT S LSYL Sbjct: 915 ALSRHGIAPRHLHVEITESLLLDNSHHCLDTLNNIRDLGCAIYLDDFGTGYSSLSYLKKF 974 Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + E +++R+I+ M+K++ ++A+ I + L +G + Sbjct: 975 PISAIKIDKSFVEQLPGCESDASLVRAIVNMSKSLGMKLVAEGIESKDQQAFLQALGSQF 1034 Query: 935 IQDSHVASPLGFNSILKLLKERF 957 Q + PL F +L L+ Sbjct: 1035 GQGYLYSRPLPFEELLPWLERHQ 1057 >gi|229064998|ref|ZP_04200296.1| Sensory box protein [Bacillus cereus AH603] gi|228716299|gb|EEL68011.1| Sensory box protein [Bacillus cereus AH603] Length = 735 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 168/734 (22%), Positives = 318/734 (43%), Gaps = 32/734 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + + + T + LF ++ + Sbjct: 6 AWILIGYFIAQSLVIYAVISLYRRERYSSSRISLIIGFTIILVYGYIHLFQLNTGMGTSS 65 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGLW- 355 I ASI+L I+Y K ++ ++P + +I + + Sbjct: 66 EVSYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFAVIQ 125 Query: 356 ------MAITKRLDNDIIQPALVGGL---VLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 M I L ++ + +++ Q + +R Sbjct: 126 PWDDKFMLIGLVLSLVLLFLRQLFMWKDNQVLIDTYEQLTTQLEGEVEEGVSALSKSEQR 185 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + +I D + + Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDPQDHELLKK 243 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++ + I P+ N +++ GIA DIT + Sbjct: 244 SLQITKEGRPQTL--EIRTKEKEGYYYHLHITFIPIF-INREVVGMFGIARDITTLYEKQ 300 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L TIL+L+ + N VM +D+D++KKIND LG Sbjct: 301 KQVEHMAFHDALTGLPNRRKFEKDLKTILNLAQNNTN-DVAVMFLDLDRFKKINDRLGHD 359 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ DI+AR G+ F I+L + + A + + P Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFIAEQILTILNKPYF 419 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + + E++VT SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 420 IKDEELSVTPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 480 HFLEGELSKALQQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 540 GFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHADLISTISKVLEETELK 598 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + L L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 599 PEALDIEITESIAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E K L CD+IQ + Sbjct: 659 REFICGITNSPLEEAIIASIITLSKELNLEVIAEGVETEEQWKFLHEQNCDHIQGFLFSK 718 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 719 PVSSKDVWMLLHKK 732 >gi|284041608|ref|YP_003391948.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] gi|283945829|gb|ADB48573.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] Length = 763 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 162/728 (22%), Positives = 292/728 (40%), Gaps = 21/728 (2%) Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292 + + + L L L I + + + + Sbjct: 40 GLLILLWAHVPALFVFALATGNPLQHALLEVVPIALCALVGQREQLGRRGRAAAVTIGLL 99 Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352 + + + A + + Y + Y GY V+L + + Sbjct: 100 TCSAVLVHLWDGTIEAHFHYFVMVVALAAYEEWFPYLLAFGY---VVLQHGLMGMMEPDS 156 Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412 G + +GF + A + + +R A Sbjct: 157 VYAHGTDDDRSPWFWAAIHGG----FIAALGFASMVTWRANESVRAHLAASEQRFHRAFD 212 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + + + +A++ G +G + +R W + D R + Sbjct: 213 DAPIGMALIGLDGRFREVNRSLASLTGYGAGKLV-QLRLW--DLSPAD---VRAEDHAAW 266 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G E R + AD W + R + + +G ++ D+T +K+ + + Sbjct: 267 PPSAGMEAVEQRFQRADGTIGWGLWRYSLVQDESGIASHWVVQLLDVTSRKQFEQQLAHQ 326 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D LTG+PNR RL LDL+ D+ V+ +D+D +K IND LG GD +L Sbjct: 327 AHHDPLTGLPNRALLTKRLQEALDLAREHDSG-VAVIFVDLDNFKVINDSLGHDAGDRLL 385 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 +++ R+ +L+ D+LAR G+ + L ++ A M ++ P L + Sbjct: 386 RNVSERLRRVLRPEDLLARFGGDELAVCLERVADTEPANRIADRMATALRAPFVLDGEQR 445 Query: 653 TVTASIGFASWTSSKIT--SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIK 708 VTAS G A +L++A+ AMY AK RG E F + DR+ ++ Sbjct: 446 FVTASFGIALARPEDPDRSPDTLLRDADAAMYRAKERGKARTEIFDASMRRRAVDRLELE 505 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 L A+ ++L +VY P + L IV +EAL++W+HP+ G IS + F+ IAE+ +I Sbjct: 506 SGLREALARNQLRVVYQPEVSLESGRIVAVEALLRWEHPQHGPISPARFIPIAEQSGLIV 565 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++L R W ++ + + +N++ + L ++L ++ I R+ Sbjct: 566 PIGAWVLREACRQAAHWNAESGGDGVVVAVNLSVRQLGASDLEATVRGAIDGARLPADRL 625 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY-IPFDTVKFNGSL 887 L +ES VM +P + L L+++G+ L +DDFG S LS+L +P D +K + S Sbjct: 626 CLEITESAVMADPAAAIESLQTLKRVGVKLAIDDFGVGYSSLSHLRELLPIDVLKIDRSF 685 Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + G E+ AI+ +I+ +A+++ +A+ + L M C Q H A P Sbjct: 686 IDGVVLREEDRAIVTAIVQLARSLGVDAVAEGVETSDQAAALRAMHCPIAQGFHFARPQP 745 Query: 946 FNSILKLL 953 + +LL Sbjct: 746 PADVAQLL 753 >gi|126651165|ref|ZP_01723375.1| hypothetical protein BB14905_00845 [Bacillus sp. B14905] gi|126592003|gb|EAZ86069.1| hypothetical protein BB14905_00845 [Bacillus sp. B14905] Length = 581 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 141/551 (25%), Positives = 270/551 (49%), Gaps = 12/551 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468 + + D + V P + G + G +H + + + Sbjct: 27 IFENVSEGIMITDEYKKIVMVNPAFEFVTGYKRDDVVGKTPAVLQSGVH--ELPFYLEMW 84 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + G Q E R + + I ++N G++ Y GI D++E+K Sbjct: 85 EQIRQE--GIWQGEIWNRRKTGDVYPEWLTIVCVTNDEGEVTNYCGIFTDLSERKIVENE 142 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + D+LT + NR ++++R+ +L+ SA +++ V +D+D++K+IND LG AV Sbjct: 143 LEKRLLTDSLTEVSNRFAYIERMDNLLESTSAISHSVQHAVYFLDLDRFKQINDTLGHAV 202 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L+ + +R+ LLK DI+AR G+ F I L + N + A FA + SI P+ + Sbjct: 203 GDSILIEVAKRLKHLLKNKDIIARYGGDEFVITLTNVKNVKEAAQFAEQIISSIEKPMMI 262 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705 +E+ ++ SIG + + + E++ A+ AM ++K G N + + Sbjct: 263 NGQEVFISTSIGVSVYPVDGKNTEELINCADRAMTYSKKNGLNGYSFYFDELQTDAQRVL 322 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ +L A++N E L + P I + +E+I GLEAL++W++ + G +S EF+ AEE Sbjct: 323 LLDSELRRAIDNREFELHFQPKIYMDNEQIQGLEALVRWNNERLGFVSPGEFIPYAEETG 382 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I ++ +LE+ +I + I + INI+S E +QA++ + Sbjct: 383 LIIPLSEVILEKACEAVIQMQQYGW--KIPVAINISSIHFKQQNFLESIQAILERYNMPA 440 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 + ++ +E VM + + L RL+++G +++DDFGT S LSYL P D +K + Sbjct: 441 NNFEIEVTERTVMNSANETVSKLVRLKQLGFKISIDDFGTGYSSLSYLVRFPLDCLKIDR 500 Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + +++ A++ +II M+ ++ ++A+ + + L +M CD IQ + + P Sbjct: 501 SFIQHIGSLDEKQAVVDAIIQMSHRLKMKVVAEGVEQAQQVDILRKMNCDIIQGYYYSKP 560 Query: 944 LGFNSILKLLK 954 L N +++ ++ Sbjct: 561 LPLNDLMEFME 571 >gi|299069558|emb|CBJ40830.1| putative signal transduction protein eal-ggdef domains [Ralstonia solanacearum CMR15] Length = 914 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 142/580 (24%), Positives = 264/580 (45%), Gaps = 11/580 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + +G+ ER LAV + V + + IL + G + G Sbjct: 328 AVQKDATERGLAESEERYRLAVSHLNEGVLIQTLDGVVLAANASAERILRVRPGQLVGRN 387 Query: 450 R-NWLPYI---HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 R + + + H D L + + + W + I P+ Sbjct: 388 RLDMMQRVVNEHGKDVALDVLPSKLVRQSGEPILGRIYGMVLKTGELIWARVNIIPIRRH 447 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + DIT+ K++ + + A D LTG+ NR F+ L ++ + D++ Sbjct: 448 GDAAPSSIMVSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDAAIERA-RDESR 506 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + +D+D++K +ND G A GD +L S R+ + + D++ARL G+ F I++ Sbjct: 507 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 566 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 +IA A + ++ P + + + SIG A + I+ S++L++A+ AMY A Sbjct: 567 VEGKRIAQLAERLLSAMREPFDTVNGRYYLGVSIGVALYPHDGISGSDLLRSADAAMYRA 626 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + + + ++ L A +NSEL LVY P L IVG EAL+ Sbjct: 627 KQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEALL 686 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+ K G +S +EF+ +AEE +I I ++L R + W + +N+++ Sbjct: 687 RWNSVKLGAVSPAEFIPVAEETGLIVPIGEWVLRRACEQAVQWYQALGY-DFRMAVNLSA 745 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ ++ +++T P+ +++ +ES++MG + R + L GI +++DD Sbjct: 746 RQFQTGDVVPTIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 805 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P VK + S + G +A+ +I+ MA+ + T+ A+ + Sbjct: 806 FGTGYSSLSYLQRFPISNVKIDRSFILGIPGDPDSVALTEAIVAMARALGMTVTAEGVED 865 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++ L + GC IQ ++ P+ + +LL+ +V Sbjct: 866 ADQVEFLAKAGCQEIQGYYIGKPVTADGFDRLLRAHLAVV 905 Score = 38.0 bits (87), Expect = 7.1, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 26/112 (23%), Gaps = 4/112 (3%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + V +L + IH +D L E Sbjct: 55 VDGRIVQGNQAATHLLAAPVPEWLAGV-ALTSVIHPDDVGLVMPSLSRAAAGSVPADPIE 113 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R+ AD + +G + + + + +LE A Sbjct: 114 HRLVRADFTHVLVTSEAAR-CTHDGQPAVMLVLREAGS--RHALERNAVQAR 162 >gi|224825197|ref|ZP_03698303.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] gi|224602868|gb|EEG09045.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] Length = 709 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 136/587 (23%), Positives = 272/587 (46%), Gaps = 15/587 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + A +Q + + V S D+++ D ++G + Sbjct: 130 LALQRRSLARANLAMAQQLHTSERMHRSLVEASPDLIFTLDERFCFTFANERTHGLIGYS 189 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF--HWMIIRI 499 + G + L + D + R +L +R G+ EFR+ + + + Sbjct: 190 PQELLGQ--SLLDLVLPVDAERVRYVL----EHRTGQRAIEFRIASRGGEIAERHFEASL 243 Query: 500 RPMSNSNGDIL-RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 P++ + R G+A D+T++K + + A+ D LTG+PNR F DRL + + Sbjct: 244 VPVALDLPQLSSRLYGVARDVTDKKHAEHRMAYLAYHDLLTGLPNRALFRDRLGLAIMQA 303 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + V+ +D+D++K ND G GD++L + +R+ +L+ D LARL G+ F Sbjct: 304 KRKGR-QVAVLFVDLDRFKLANDTFGHIKGDELLKQVGQRLQCVLRECDTLARLGGDEFT 362 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I+L + A A + K +A P ++ ++ +T SIG A + +L++A+ Sbjct: 363 ILLPDLSGKEDAALLAGKLVKEVAAPFSIDGDDVFLTVSIGIAVFPDDGDDIETLLRHAD 422 Query: 679 LAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY K +G N F + + S R+ ++ ++ A+E + L Y P + I+ Sbjct: 423 IAMYQVKAQGKNGFGFFLPVMDAAASQRLRMENEVRRALELEQFELYYQPQVEFDSRRII 482 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP G + F+ + EE+ ++K + +++ER + + W+ + Sbjct: 483 GCEALIRWPHPTRGLVPPGAFLGVIEEIGLMKPLTYWVIERACQTLREWKLAGLELS-RM 541 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+ + L+D++ + + A + + ++ +E+ + + + L L L + GI Sbjct: 542 SVNVPPEVLVDDDFYDYLIATVDRYGIRRQSFEIEITENAFIADQQAMSLKLAGLAEEGI 601 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914 + +DDFGT+ S LSYL ++P T+K + S + ++ I+R+I+ +A + ++ Sbjct: 602 RVAIDDFGTQYSSLSYLRHLPVTTLKIDQSFVREIEAGKEDSPIVRAIVAIAAGLNLNLV 661 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 A+ + E+ L +G +Q P+ + +LL + ++ Sbjct: 662 AEGVETEVQADYLGSLGAVEMQGYLFGKPMPASDFRRLLHQEAAVMS 708 >gi|229136167|ref|ZP_04264920.1| Sensory box protein [Bacillus cereus BDRD-ST196] gi|228647326|gb|EEL03408.1| Sensory box protein [Bacillus cereus BDRD-ST196] Length = 735 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 168/734 (22%), Positives = 317/734 (43%), Gaps = 32/734 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + + + T + LF ++ + Sbjct: 6 TWILIGYFIAQSLVIYAVISLYRRERYSSSRISLIIGFTIILVYGYIHLFQLNTGMGTSS 65 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGLW- 355 I ASI+L I+Y K ++ ++P + +I + + Sbjct: 66 EVSYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFVVIQ 125 Query: 356 ------MAITKRLDNDIIQPALVGGL---VLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 M I L ++ + +++ Q + +R Sbjct: 126 PWDDKFMLIGLVLSLVLLFLRQLYMWKDNQVLIDTYEQLTTQLEDEVEEGVSALSKSEQR 185 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + +I D + + Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDPQDHELLKK 243 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++ + I P+ N +++ GIA DIT + Sbjct: 244 SLQITKEGRPQTL--EIRTKEKEGYYYHLHITFIPIF-INKEVVGMFGIARDITTLYEKQ 300 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L TIL+L+ N VM +D+D++KKIND LG Sbjct: 301 KQVEHMAFHDALTGLPNRRKFEKDLKTILNLAQNTTN-DVAVMFLDLDRFKKINDRLGHD 359 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ DI+AR G+ F I+L + + A + + P Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFMAEQILTILNKPYF 419 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + + E++VT SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 420 IKDEELSVTPSIGIAMYPDYGNDVTELMKNADMAMYRAKANGKNRFIFFSKEMSIAQNEI 479 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 480 HFLEGELSKALQQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 540 GFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHADLISTISKVLEETELK 598 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + L L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 599 PEALDIEITESIAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E K L CD+IQ + Sbjct: 659 REFICGITNSPLEEAIIASIITLSKELNLEVIAEGVETEEQWKFLHEQNCDHIQGFLFSK 718 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 719 PVSSKDVWMLLHKK 732 >gi|163943036|ref|YP_001647920.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] gi|163865233|gb|ABY46292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] Length = 892 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 178/843 (21%), Positives = 336/843 (39%), Gaps = 73/843 (8%) Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 K L+ +++ + I L + + ++ A+ + ++ YI + Sbjct: 54 AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---LHWNRWHAKVGYITFSGIACI 293 GF K + S L + I + I F + L R ++ Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDLSSFRMLTTDTWVLIGYFIAQ 173 Query: 294 AILFCMS-------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 +++ Y + I T+ + Y F + GM+ LI + Sbjct: 174 SLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHLFQLNAGMETSSEVSYLIHTASI 233 Query: 347 IFIWFIGLWMAITKRLDN------------DIIQPALVGGLVLIVILI------------ 382 + I + + K + + I P + ++I Sbjct: 234 LLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFVVIQPWDDKFMLIGL 293 Query: 383 -------------------------GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417 Q + +R D Sbjct: 294 VLSLVLLFLRQLYMWKDNQVLIDTYEQLTTQLEDEVEEGVSALSKSEQRYKSLFEDHPDA 353 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + ++ + + +I D + + L R Sbjct: 354 VFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDPQDHELLKKSLQITKEGRPQ 411 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 L E R + + ++ + I P+ N +++ GIA DIT + + + AF D Sbjct: 412 TL--EIRTKEKEGYYYHLHITFIPIF-INKEVVGMFGIARDITTLYEKQKQVEHMAFHDA 468 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ F L TIL+ + N VM +D+D++KKIND LG GD +L+ + + Sbjct: 469 LTGLPNRRKFEKDLKTILNTAQNTTN-DVAVMFLDLDRFKKINDRLGHDFGDLLLIEVAK 527 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ DI+AR G+ F I+L + + A + + P + + E++VT S Sbjct: 528 RLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFMAEQILTILNKPYFIKDEELSVTPS 587 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715 IG A + +E++KNA++AMY AK G N F +++ ++ +L A+ Sbjct: 588 IGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFIFFSKEMSIAQNEIHFLEGELSKAL 647 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE I + ++L Sbjct: 648 QQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W +Q + + +N++ ++L + ++ +T P + + +ES Sbjct: 708 RTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNRSDLIPTISKVLEETELKPEALDIEITES 766 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 + + L L+ +GI +++DDFGT S L+YL P +T+K + G + Sbjct: 767 IAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITNSP 826 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ SII ++K + +IA+ + E K L CD+IQ + P+ + +LL Sbjct: 827 LEEAIIASIITLSKELNLEVIAEGVETEEQWKFLHEQNCDHIQGFLFSKPVSSKDVWRLL 886 Query: 954 KER 956 ++ Sbjct: 887 HKK 889 >gi|212633073|ref|YP_002309598.1| sensory box protein [Shewanella piezotolerans WP3] gi|212554557|gb|ACJ27011.1| Sensory box protein [Shewanella piezotolerans WP3] Length = 1073 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 142/569 (24%), Positives = 269/569 (47%), Gaps = 13/569 (2%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + ++ S S + + + P I G + G + L H Sbjct: 500 ARTSLQQASAVFEHSSEGIMVTNADNRIELVNPAFTKITGYTLEEVKGQKPSVLSSNHHQ 559 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 F + L + + E + D + + I + N+ G I +YIG+ D+ Sbjct: 560 --PEFYSQLWHSITT-TNHWEGEIWNKRKDGNVYPEYLSITAVENAQGQISQYIGLFLDV 616 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + K+ + + + D+LT +PNR F RL +D ++ N + V ID+D++K I Sbjct: 617 SNHKQYEQDLWYKSNYDSLTKLPNRHQFSSRLQHAIDGASQT-NSQVAVFFIDLDRFKFI 675 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 N++ G A G+++L R+ +L D +AR G+ F II N A + Sbjct: 676 NELHGHAAGNEILKQSATRLESVLGPEDSIARFGGDEFVIISPQHNAIETAEQLAHKLVD 735 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P+ L E ++AS+G A + +L+N+E AMY AK G H + F Sbjct: 736 VLVQPLKLDAIESNISASVGIAFYPEDGQDIEMLLRNSETAMYQAKRDGRAHFQYFSPEM 795 Query: 700 FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ +++ L AV+ SE YL Y P++ + + +EALI+W P++G IS + F Sbjct: 796 NVEMLERMQLEQRLRKAVKKSEFYLEYQPVVDMTHGTVSSVEALIRWRDPEFGIISPALF 855 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE---LCEGM 814 + IAEE +I+ + ++L + D+ SW Q +M + I IN++ + +++ + + Sbjct: 856 IPIAEETGLIEPLGEWVLNQALADLSSWHAQGHM--LKIAINVSGRQCINSNGLSFYQVL 913 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + + + + + + +ES+++ + S +L +R +G+ + LDDFGT S LSYL Sbjct: 914 EEALLRHKIAAHYVHIEITESLLIEDKPYSLEILQSIRNLGVDIYLDDFGTGYSALSYLN 973 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P +K + S + + ++ ++++I+ M +++E T++A+ I E L +GC Sbjct: 974 QFPISVIKIDKSFIDNATVSQSDAKLVKAIVMMGQSLEMTLVAEGIETEEQWDFLQSLGC 1033 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVK 961 +Y Q ++ PL ++L L+ + + Sbjct: 1034 NYAQGYLMSKPLSSENLLTFLENETAINR 1062 >gi|149182637|ref|ZP_01861106.1| hypothetical protein BSG1_13231 [Bacillus sp. SG-1] gi|148849660|gb|EDL63841.1| hypothetical protein BSG1_13231 [Bacillus sp. SG-1] Length = 737 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 151/563 (26%), Positives = 277/563 (49%), Gaps = 20/563 (3%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHIND 460 ++ V S DI+ V + +LG S+ G + L D Sbjct: 179 ESEDQYRSLVEMSPDIIAVIR-DGKFVYMNAAGSRVLGAKDPDSLIG--EDILKVASEKD 235 Query: 461 RDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 R + + R G L +E + D + P+ + ++ +G DI Sbjct: 236 VGMIRKSISEYSERVRAGNLIFEIKATRFDGVEIDAEVSAMPILYGSKPAIQIVG--RDI 293 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE+KK+ E I A+ D LT +PNR F RL +L+ S + ++ +D+D++K I Sbjct: 294 TERKKTEETIREMAYYDTLTSLPNRNMFKLRLNKLLESS---PSTSLAILFLDLDRFKVI 350 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G + GD +LV + R+ ++L + R G+ F ++L + ++ K A ++ + + Sbjct: 351 NDTKGHSTGDRLLVKVADRLTDVLNKEGEVFRQGGDEFILLLDN-SDKEKAASLSVRILQ 409 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 S PI++ ++ VT SIG + + + ++K+A+ AMY AK RG N+ + + + Sbjct: 410 SFTKPIDISGQDFFVTPSIGISMYPDDGMDQETLIKHADTAMYLAKDRGKNNFQFYNRNL 469 Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ ++ +L A+E +L L Y P + L E++G+EALI+W+HP G +S +EF Sbjct: 470 NRNTTRKMDLENELRKALELQQLVLFYQPKVNLETGEVLGVEALIRWEHPTLGMVSPAEF 529 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I I ++L R W+ I + +NI+ + L D++ + +Q Sbjct: 530 IPLAEETGLIVPIGKWVLWEACRQSKEWKKSGIGC-ISVAVNISVRQLQDDDFVQHVQQA 588 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + T PS ++L +ES +M + E+S +L +L+ +G+++++DDFGT S L+ L ++P Sbjct: 589 MKDTGLEPSLLELEITES-IMQDFEKSSRILNKLKNLGVTISIDDFGTGYSSLTNLRFLP 647 Query: 878 FDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 D +K + S + K +I+++II + N+ IIA+ + E + L + C Sbjct: 648 IDHIKIDKSFVDDIIDHSKHSKNGSIVKTIIDLGHNMNFNIIAEGVEEEEQVDFLLQNSC 707 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 Q + PL + ++E Sbjct: 708 SIGQGYFYSRPLPPEQLEAYIRE 730 Score = 88.9 bits (219), Expect = 5e-15, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 4/187 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS--QGIFSDGE 405 ++ + + L + I + I + + + G F + + + Sbjct: 3 IVFIVVFIQIVQLILGLYFPVENFFNLFIQIALTITTLSLVYFMLKGIFKTTKELSESNQ 62 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + + +W D+ + + T I + G + W I D + Sbjct: 63 KLNHIFESVDVAIWSHDLKSNNLLITQGIEKLYGREMEDFYKDFYLWKKVILPEDLQSLE 122 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + +R+ D W+ R P + G+++ + + DIT++K+S Sbjct: 123 GRQEVLQNGETCT--STYRITKPDGNVRWIQDRGIPTLDEKGNLIYFSSVLFDITDRKES 180 Query: 526 LEGILCN 532 + Sbjct: 181 EDQYRSL 187 >gi|163750968|ref|ZP_02158200.1| sensory box protein [Shewanella benthica KT99] gi|161329258|gb|EDQ00256.1| sensory box protein [Shewanella benthica KT99] Length = 1104 Score = 527 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 138/554 (24%), Positives = 259/554 (46%), Gaps = 12/554 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + D + + A + + V D + TI+G + ++G + L Sbjct: 555 LQRQLEDDVKLLAQAFGNTSEGVLIMDAAERIKVSNKAAQTIVGASDKQLNGKFFSELIL 614 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + D +L + E + + + M S G+I Y+ + Sbjct: 615 VKEGRADEIVHLL-----QQGVSWTGEREFLREQGGPCPVWLNVSAMLGSKGNITHYVAV 669 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DITE+K++ + A D LTG+PNR F RL + SA + ++ +D+D+ Sbjct: 670 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSTRLAQSI-HSAEHSGEKLALIFLDLDR 728 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G ++GD +LV R+ + L R G+ F I+L +N I Sbjct: 729 FKHVNDSYGHSMGDALLVEAANRLQSCITEEHTLCRFGGDEFVILLRDASNLDTINHICA 788 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + I P L RE ++ SIG + W + ++KNA+ AMYHAK G + + F Sbjct: 789 QLLEQIKTPFELYGREFFISTSIGVSLWPDDARQAEVLIKNADQAMYHAKEEGRGNFQYF 848 Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752 + ++ +L A+E E L Y P + + ++++G+EAL++W H + G + Sbjct: 849 SSERNLEALYHLRLEAELRKAIERDEFELHYQPQVDILKGDKLIGMEALLRWRHHEDGLV 908 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 + F+ +AE +I I+ ++L + + W Q+ + +NI++ + E Sbjct: 909 RTDIFIKVAESCGLIVDIDRWVLRQACLQGVIW-SQSYDEIFKLSVNISAVHFRQADFIE 967 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 G++ ++++T P + +E V+M + ++ L LR +GI + +DDFGT S L+Y Sbjct: 968 GVKKILAETGLDPHLLGFEITEGVLMKELDTAKEHLRELRVLGIEVAIDDFGTGYSSLAY 1027 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L + DT+K + S + E AI SII +A+N++ ++A+ + + ++++ Sbjct: 1028 LRHFDVDTLKIDRSFLVDIATNEADQAIASSIIELARNLKLNVVAEGVETKEQLEQIFSR 1087 Query: 931 GCDYIQDSHVASPL 944 GC IQ + + PL Sbjct: 1088 GCYVIQGYYFSKPL 1101 Score = 95.4 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 9/182 (4%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 ++ L+ L+ I + I + V A + + ER ++ GS Sbjct: 391 FVKQYWWQMTWVKSLLLFTLLCICVGIILYRQRQVKAFKRINTALVESEERLRQSLKGSN 450 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY--IHINDRDNFRTILDSFVG 473 +W+W + A G I L IH DRD +S + Sbjct: 451 SELWEWRQDSQMFSLENQWAE-----KEDDRGNIILRLEGFPIHREDRDQVLNAWESMLK 505 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMS--NSNGDILRYIGIANDITEQKKSLEGILC 531 R E+R R D + W + RP+ +G ILR GI +DIT Q++ + + Sbjct: 506 GSSDRFDVEYRHRREDKSWGWTRVSGRPVEVNAESGRILRVAGIYSDITLQRQLEDDVKL 565 Query: 532 NA 533 A Sbjct: 566 LA 567 >gi|163748444|ref|ZP_02155698.1| sensory box protein [Shewanella benthica KT99] gi|161332022|gb|EDQ02699.1| sensory box protein [Shewanella benthica KT99] Length = 819 Score = 527 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 144/570 (25%), Positives = 263/570 (46%), Gaps = 12/570 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448 V + + + E S + V D + + T + I G + + G Sbjct: 255 VARNISQHKAVQEELEITGRIFENSVEGVLITDRKGEILETYGAFSEITGYSKDEVVGKN 314 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 R + H D+ F + + +G+ E R + ++ + +S + + Sbjct: 315 PRMFSSGRH--DKAFFTELWSRLIH--KGKWHGEIWNRRKNGAVFPQMLTVSSVSGEDSE 370 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + ++ + +DIT QKKS + A+ D LT +PNR + + + + + TV Sbjct: 371 VRYFVAVFSDITLQKKSEAELAHQAYHDPLTQLPNRMALISLIEQDIRHAEVQQGQLATV 430 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 ID+D +K IND G GD +LV L R+ L D LAR+ G+ F ++L + Sbjct: 431 -FIDVDFFKHINDSFGHLAGDKILVELAGRLTSLKGAEDTLARIGGDEFVVLLPQVEGNE 489 Query: 629 KIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ +RK+ P + + E I +TAS+G + + S +L+NA+ A + AK Sbjct: 490 ELTLALSKLRKAFEQPFIIDDNEPIRLTASMGVSVFPHDGKDSYTLLRNADSAKHRAKLD 549 Query: 688 GGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + S + + ++ L A++ +LVY P + + E G EAL++W Sbjct: 550 GRNSYAFYTESLTQESREHLKLQSALHAALDKQNFHLVYQPKLDFVTMETTGFEALLRWC 609 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 P GN+S ++F+ IAE++ +I I L++L++ + + W Q I +N+A + L Sbjct: 610 DPVLGNVSPAKFIPIAEKIGLINEIGLWVLKQACQQGVKWISQGKKFG-RIAVNVAGQQL 668 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + ++ ++ +T + S ++L +ES +M +PE L RL ++GI L++DDFGT Sbjct: 669 QRTSFVDEVKQVLQETGFPASALELEVTESFMMSDPEVVIRDLQRLGEMGIELSIDDFGT 728 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL +P +K + S + AI +++I + + + +IA+ + E Sbjct: 729 GYSSLSYLKKLPIHKLKLDQSFVKDLPLDLDNAAIAKAVIALGQALNLKVIAEGVENEAQ 788 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L GCD Q + P+ ++ L Sbjct: 789 ATFLRDNGCDEAQGYLYSKPMLPEALNDFL 818 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 2/124 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 L + + +W D + + G + + + F Sbjct: 149 LQLFIDSLKEHIWIKDTSGRYMVCNQSVERAWGKTREEIINKTDE--EIFVADLANEFIQ 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + E + D +W+ P+ +G++L +G+A +I++ K Sbjct: 207 SDRDAIHKGIQITTEECKGLIEDVDKYWLETSKVPLLTEDGELLGVVGVARNISQHKAVQ 266 Query: 527 EGIL 530 E + Sbjct: 267 EELE 270 >gi|238762320|ref|ZP_04623291.1| Sensory box-containing diguanylate cyclase [Yersinia kristensenii ATCC 33638] gi|238699305|gb|EEP92051.1| Sensory box-containing diguanylate cyclase [Yersinia kristensenii ATCC 33638] Length = 834 Score = 527 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 137/558 (24%), Positives = 267/558 (47%), Gaps = 17/558 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + ER + D +W+ D + TI GL+ G + L Sbjct: 280 ALIASEERFRHMAEAATDWLWETDANLRITYLSQRFTTITGLSVERWLGRNLDSLLNC-- 337 Query: 459 NDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 D R+ L + + R LQ + +A + +P+ N + + + G + Sbjct: 338 -DHIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRVYAKPII-KNDENIGFRGTVS 393 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT++ ++ E I + D+LTG+PNR + L + L + ++ +D+DK+K Sbjct: 394 DITQEIEAQERIQHLSLHDSLTGLPNRMRMKEFLESKLRNLTAAPH-PLVILNVDLDKFK 452 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND G GD VL ++ R+ L+ D++AR G+ F +I+ ++ +I D + Sbjct: 453 PVNDTFGHMAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIITGLSSIKEIEDLCTRV 512 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 I P + +++I ++ASIG A + + E+L+ A++AMY AK+ G N + Sbjct: 513 IDRIESPYIINDQDIFISASIGIALAPQDSMQAEELLRFADIAMYEAKNSGRNRWSFYSS 572 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 ++ L A++++E L Y P R+ ++ G EAL++W+HP G + Sbjct: 573 EMNDRLMQRSELERFLRQAIKHNEFNLYYQPRYRIAGTKLTGAEALVRWNHPVLGLLMPD 632 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AEE +I AI+ + + + +D +W + + +NI++ + L E ++ Sbjct: 633 QFIALAEETGLITAISDWTMLQACQDAATWPAS-----LIVSVNISAIEFRSQHLIERVR 687 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T R++L +E +++ + + + + L+ +G+ L++DDFGT S L+YL Sbjct: 688 QVLRQTGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRLSMDDFGTGYSSLNYLRR 747 Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + T+ R +I+ II + + T+ A+ + ++ L + CD Sbjct: 748 FPFDGLKIDKSFIDELTQSREGQSIVEGIINLGHALSMTVTAEGVETTEQLEHLQALMCD 807 Query: 934 YIQDSHVASPLGFNSILK 951 Q + P+ N +L Sbjct: 808 EAQGYLLGKPMKLNELLN 825 >gi|229014517|ref|ZP_04171635.1| Sensory box protein [Bacillus mycoides DSM 2048] gi|228746867|gb|EEL96752.1| Sensory box protein [Bacillus mycoides DSM 2048] Length = 675 Score = 527 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 147/562 (26%), Positives = 266/562 (47%), Gaps = 11/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R D V+ ++ + ++ + + +I Sbjct: 118 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDP 175 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + L R L E R + + ++ + I P+ N +++ GIA D Sbjct: 176 QDHELLKKSLQITKEGRPQTL--EIRTKEKEGYYYHLHITFIPIF-INKEVVGMFGIARD 232 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT + + + AF D LTG+PNR+ F L TIL+L+ + N VM +D+D++KK Sbjct: 233 ITTLYEKQKQVEHMAFHDALTGLPNRRKFEKDLKTILNLAQNNTN-DVAVMFLDLDRFKK 291 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L + + A + Sbjct: 292 INDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFIAEQIL 351 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + + E++VT SIG A + +E++KNA++AMY AK G N F Sbjct: 352 TILNKPYFIKDEELSVTPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFIFFSKE 411 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +++ ++ +L A++ +E L Y P + ++I+G EAL++W HPK G +S ++ Sbjct: 412 MSIAQNEIHFLEGELSKALQQNEFSLEYQPQVNTKTKQIIGFEALVRWKHPKLGIVSPAQ 471 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I + ++L + W +Q + + +N++ L + Sbjct: 472 FIPLAEETGFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHAYLISTISK 530 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES+ + L L+ +GI +++DDFGT S L+YL Sbjct: 531 VLEETELKPEALDIEITESIAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKY 590 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + G + AI+ SII ++K + +IA+ + E K L CD+ Sbjct: 591 PINTLKIAREFICGITNSPLEEAIIASIIKLSKELNLEVIAEGVETEEQWKFLHEQNCDH 650 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ + P+ + LL ++ Sbjct: 651 IQGFLFSKPVSSKDVWMLLHKK 672 >gi|294141998|ref|YP_003557976.1| sensory box protein [Shewanella violacea DSS12] gi|293328467|dbj|BAJ03198.1| sensory box protein [Shewanella violacea DSS12] Length = 1018 Score = 527 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 150/557 (26%), Positives = 254/557 (45%), Gaps = 15/557 (2%) Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 E LA S + + D +T + I G + + L Sbjct: 452 EESLKLAASVYNNSSEAMSVQDRQGKIITINSAFSEITGYLENEVIDQHIDILRC---ER 508 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + S G+ Q E ++ + + + + I + +S G++ R + + +DIT Sbjct: 509 TNKTQFEQMSLQIIETGKWQGEIWLKHKNATEYIVWLTINTIYDSRGEVYRRVALFSDIT 568 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ I A D LTG+PNR+ L+ L T L S + +M +D+D +K++N Sbjct: 569 EKKQAEHIIWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKQ-HLALMFLDLDYFKEVN 627 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG VGD +LV +R+ ++ D++ARL G+ F ++L + ++ + A + Sbjct: 628 DTLGHDVGDLLLVETAKRLKSCIRESDVVARLGGDEFTLVLSAIDDHKGVDRVAANILTR 687 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 ++ P NL ++ASIG + + +LK+A+ AMY AK G N F S Sbjct: 688 LSEPFNLGNDTAFISASIGITLYPDDASSIESLLKHADQAMYAAKDLGRNRFHYFTASMQ 747 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+++ DL AV N E + Y PII L + EI EALI+W HP+ G +S EF+ Sbjct: 748 EEARYRMILIRDLRQAVNNKEFEIFYQPIIDLPNGEIHKAEALIRWHHPERGLVSPGEFI 807 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEGMQA 816 +AEE +I I ++ + A+ WRD+ + + I IN + D + + Sbjct: 808 PVAEETGLIIEIGNWVFSQAAKQCAHWRDKYGVE-LQISINKSPVQFRDEGDSFEDWIVQ 866 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + + + + I + +E +++ L R GI ++LDDFGT S L+YL Sbjct: 867 -LKELKLASNSICVEITEGLLLDASMGVSEKLLAYRDAGIQVSLDDFGTGYSSLAYLKKF 925 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + + +II MA + T+IA+ + E LT+ GCDY Sbjct: 926 DIDYLKIDQSFTRNLESDTDDVTLCEAIIVMAHKLGMTVIAEGVETEYQRDILTKAGCDY 985 Query: 935 IQDSHVASPLGFNSILK 951 Q + P+ Sbjct: 986 GQGYLFSRPIPAADFED 1002 Score = 121 bits (305), Expect = 4e-25, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + S E+ +L + S +WDWDI ++V A +LG + + R W+ Sbjct: 320 QAESAMRSSQEQLALVLSSSELGLWDWDIKTNKVDRNERCAELLGCSVYEIQHNERIWIN 379 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYI 513 IH DR +D+ + + E+R+ A + W++ + + ++ G LR Sbjct: 380 GIHPQDRVAVLHSVDAHLKGDTVQHSIEYRLVALSGETRWILDSGKVVSRDAKGVPLRMC 439 Query: 514 GIANDITEQKKSLEGILCNA 533 G DIT++K+ E + A Sbjct: 440 GTHTDITDRKRVEESLKLAA 459 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 35/325 (10%), Positives = 81/325 (24%), Gaps = 19/325 (5%) Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI----IFLFMYLHWNR 277 + V + + F+ V + + I + Sbjct: 5 VIYSLVQNAALLLAMVFVYDAVPRKQQNEYFFIWRLSVGAVIGGITIMTMMTPWEYQTGV 64 Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIA--RITLASIVLYYTYFIIYHGMKGYE 335 + I L + I + + + ++ + Y+ Sbjct: 65 FFDTRSVILAISGLFFGALPTFIAVSIAAVYRLMEGGIAVWAGLGVIISSGLFGSLWRYK 124 Query: 336 RAV---------LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 R L + +IL + +++ N ++Q +L L+ V + Sbjct: 125 RKAAIADLSYKELYLFGFILNLLSLSWMFILPFDMAINILMQLSLPVLLIFPVATTLLGL 184 Query: 387 IQHVLATGYFSQGIF-SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + I D + + + V P + +L + Sbjct: 185 LLSRRLEIERDAKIQLQDDFMFRSQFNIGNIGIGISTVDQHWVKVNPRVCQMLKYTQAEL 244 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 W+ H D + + + + R A D + + + Sbjct: 245 LTK--TWVEMTHFEDLQTDLLQFERMLQGEIDEYEMDKRFVAKDGSIVYTHLTVACQR-V 301 Query: 506 NGDILRYIGIANDITEQKKSLEGIL 530 N + I DIT QK++ + Sbjct: 302 NAKVQLVISGLLDITSQKQAESAMR 326 >gi|94270720|ref|ZP_01291807.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1] gi|93450693|gb|EAT01779.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1] Length = 941 Score = 527 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 142/587 (24%), Positives = 250/587 (42%), Gaps = 17/587 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + ++ +++ E + + + D V+ A G Sbjct: 348 MLASLAEYLAPLLAARLESRRAEELVARVLETIDEGFIIIDHEFKIVSANRAYAESAGYP 407 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIR 498 + G + H D+ + D V + A + ++ + Sbjct: 408 LAEVIGRHCYQVS--HQIDQPCYLNGEDCAVQHVFNTGEPHTAVHTHYTAAGEPLYVETK 465 Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 P+ + G + R I + DIT++K + I AF D LT +PNR+ F DRL Sbjct: 466 AYPLERDDLGTVRRAIEVVTDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAFSA 525 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 SA V+ +D+D +K +ND G VGD +L R+ E ++ D ++R G+ F Sbjct: 526 SARSGQ-HGAVLFLDLDNFKTLNDTRGHDVGDLLLTMAAERLQEAVRANDTISRQGGDEF 584 Query: 618 GIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 ++L + + A A +R ++ P +L E + SIG + + + E Sbjct: 585 MVLLNNLSPERHAAISQAGRVAEKIRAALDQPFDLDGYEHHIGVSIGLSLFLGHDTPADE 644 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730 + K A+ AMY AKH G N V F + DL A+ + L Y P Sbjct: 645 LFKRADAAMYQAKHAGRNQVRFFDPEMQAELEQASALVVDLRQAIWQGQFQLHYQPQTA- 703 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 D I+G EAL++W HP+ G +S +F+ +AEE +I AI ++LE + +W D Sbjct: 704 NDGRIIGAEALLRWRHPERGPVSPMQFIPLAEESNLILAIGRWVLEEACGQLAAWADLPA 763 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + +N++++ E ++ +++ T P +KL +ES+VM + + Sbjct: 764 AGNCKLAVNVSARQFRQPEFVAEIRRILAATGADPKLLKLELTESIVMTELADTVSKMQE 823 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 LR +GI ++DDFGT S L+ L +P + +K + + + AI+ +II M + Sbjct: 824 LRDLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMGRT 883 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ +IA+ + + + L R GCD Q + P+ LL Sbjct: 884 LDIQVIAEGVETKEQLATLARYGCDAYQGYLFSRPVPAAQFAHLLTS 930 >gi|229105893|ref|ZP_04236518.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] gi|228677524|gb|EEL31776.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] Length = 909 Score = 527 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 183/854 (21%), Positives = 340/854 (39%), Gaps = 30/854 (3%) Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175 F L + S R+ D F ++P + L L Sbjct: 66 RLFWIILSVGALSYFIGDIVVSYQRLILKDYYTF---VDPSDFFYLL------FLISFAL 116 Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGYIS 233 + I + A F +Y++ ++ + T + +V L Y Sbjct: 117 AFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIEQTIHVFTTSYIDIFVQLTYPM 176 Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFSGI 290 D FL +NL L + L S+LI++ Y + + T + Sbjct: 177 ADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDAIYAYIKYFTPAYSMFTVTPF 236 Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF-I 349 + ++ + + + + ++ I A + I Sbjct: 237 YQVVLVLAAIACILHTKEPEKQEQVLLTPKFGESIRLSLPYISVVMLIIFILAEYVFAPI 296 Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSDGE 405 IGL + T L + L+L + Q L T + ++ + + Sbjct: 297 VVIGLIITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTEDLVEQKNELYHNQQ 356 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 D ++ D+ + + T+LG + + + I+ D + Sbjct: 357 MFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEII 414 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + E R + +++ + P+ + I + DITE K+ Sbjct: 415 NAFHRVKKGN--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESKQQ 471 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I A+ D LT + NR++F L + + VM +D+D++K IND LG Sbjct: 472 QEQINFLAYHDTLTELANRRAFHQYLEKAIARAKIS-KSSFAVMFLDLDRFKVINDTLGH 530 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L+++ +R+ L LARL+G+ F I++ + + A + ++ P Sbjct: 531 RVGDLLLIAVAKRLERLSTQHMKLARLAGDEFTILIENYKKRTDVKKIADMIVVAMNKPF 590 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 + + + ++ SIG A + + +L++A++AMY AK++G N + ++ Sbjct: 591 EIENQHLRISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKKIER 650 Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 I++DL LA+ N E YLVY P I +I+G EALI+W HP G+IS EF+ I EE Sbjct: 651 KARIEKDLPLALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVEE 710 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 + + ++L+ + W + I +N+++K+ N+L E + +++ Sbjct: 711 TPQVVPLGHWVLKEACLQLKIWH-TFGYQNLKISVNLSAKEFQQNQLIENISQILNDVQV 769 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P + L +E + M N + + L +L++ GI +DDFGT S L+YL P DT+K Sbjct: 770 DPKHVTLELTERIAMINEKETLSRLKQLKEYGIQTAIDDFGTGYSSLAYLSIFPIDTLKV 829 Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + AI +I+ +A + ++IA+ I E +K L + C Y+Q + + Sbjct: 830 PREFTQLADHRPEERAIFSTILSLANTLNLSVIAEGIETEKQLKFLQKNNCKYMQGYYFS 889 Query: 942 SPLGFNSILKLLKE 955 PL +K L++ Sbjct: 890 KPLTSKQFIKFLQK 903 >gi|207728363|ref|YP_002256757.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] gi|206591609|emb|CAQ57221.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] Length = 636 Score = 527 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 152/567 (26%), Positives = 263/567 (46%), Gaps = 23/567 (4%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 V + + D R P A +LG++ ++ G I++ D +D Sbjct: 57 MVNALTEGLLVCDAQRRVTYANPSAARLLGVSLDTLVGLRLPEAVGAAIDEFDTPIRDID 116 Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513 + R +L F +R D + W+ P+ G+ + Sbjct: 117 WPDGDVLADGRPQLNQIFGLRCLDGRTVWVSTNWTPLYAEAGEPATASPAGRHAQPYAVL 176 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DIT+ +++ + I A D LTG+ NR + DRL L L+ + R +VM +D+ Sbjct: 177 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-GTRVSVMFLDL 235 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K IND LG GD +L + R+ + D +ARL G+ F ++L S + + Sbjct: 236 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGMGTRRV 294 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + +I P ++ +E+ V SIG A + +L+ A+ AMY AK RG N+ + Sbjct: 295 AERILAAIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 354 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 +F S R I+ L A + +E Y Y P + + IVG+EALI+W+ +G Sbjct: 355 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSADFGR 414 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + +F+ AEE +I I+ ++L + WR +P + + IN++ + +L Sbjct: 415 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 473 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ ++ + ++L +E +++ + LL LR +G+SL LDDFGT S LS Sbjct: 474 GMVRGALTNSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSLS 533 Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + S + +R AI R+II MA+ + +A+ + ++ L Sbjct: 534 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLRE 593 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD Q + PL ++ L++E Sbjct: 594 IGCDEYQGYLLTRPLEPAAMHDLVREH 620 >gi|94265329|ref|ZP_01289085.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93454186|gb|EAT04510.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 989 Score = 527 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 145/586 (24%), Positives = 273/586 (46%), Gaps = 13/586 (2%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPD 433 L + + + + + + ER L A+ S D V D+ ++ P Sbjct: 256 LYGLPATLEQVAQLRQLQDEQRALRASEERHRLQVAALNASRDGVVITDLEPKIISVNPA 315 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 TI G + G + L H +DR ++++ G Q E R D + + Sbjct: 316 FTTITGYHEKEVRGKSPSLLKSGH-HDRAFYQSMWAQLKQQ--GFWQGEVWNRRKDGEVY 372 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 ++ I + + G+ Y+G+ D+T ++S E + A D+LTG+PNR L Sbjct: 373 PELLSISTVYDEAGEPSHYVGVKTDLTNLRRSEERLQHLAHHDHLTGLPNRLLLEALLEH 432 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L+ + + + R V+V++ D+++ IN+ +G A GD++LV++ +R+ +L+ D LARL+ Sbjct: 433 ALERAQREQS-RLAVLVLNCDRFRTINESVGYAAGDELLVAVVKRLQSILRAEDTLARLA 491 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSE 672 G+ F ++L + ++ + +++ P L E+ + AS+G + + T + Sbjct: 492 GDEFALVLEGLGDYREVEFTLQRLWQALEQPFALPDGYEVYIQASVGISFYPQDDDTVAG 551 Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 +L A+ A+ AK GGN + + ++ L A++ E L Y P + L Sbjct: 552 LLVRADGAVNQAKDGGGNRCYYATSTLNEESRRGLELEAALRRALQQREFLLYYQPKVAL 611 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 I G EALI+W P G ++ EF+ AE +I A+ ++++ R + WR++ Sbjct: 612 AGGRITGAEALIRWQRPGHGLVAPGEFIPAAERSGLIVAMGAWVIDEGCRQLRRWREEGL 671 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + + +N+++ L ++ +++ + ++ L +ES++M PE + + Sbjct: 672 G-DLRLAVNVSASQFRAPGLVTALKQALAEHRVAAGQLTLELTESMLMSEPEAAIARMEE 730 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 L+ +G+ L LDDFGT S + L P D +K + S + G + I SII MA Sbjct: 731 LKTLGVELALDDFGTGYSSFANLSRFPIDQLKIDRSFVEGIVSSPDAATIAASIIAMAHQ 790 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + ++A+ + + L R GCD IQ + PL +LL+ Sbjct: 791 MRLKVVAEGVENQPQANYLRRNGCDEIQGFLFSKPLPAADFARLLE 836 >gi|254687210|ref|ZP_05151068.1| sensory box/GGDEF family protein [Bacillus anthracis str. CNEVA-9066] gi|254724703|ref|ZP_05186486.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055] gi|254755818|ref|ZP_05207850.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum] gi|254762158|ref|ZP_05214004.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia 94] Length = 604 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 43 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 100 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L + E R + + ++++ I + P N +++ G Sbjct: 101 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 157 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 158 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 216 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG +GD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 217 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 276 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 277 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 336 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 337 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIV 396 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 397 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 455 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 456 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 515 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 516 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 575 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 576 NCDHIQGFFISKPVSSKDVWRLLHKK 601 >gi|331007322|ref|ZP_08330521.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC1989] gi|330418884|gb|EGG93351.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC1989] Length = 703 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 147/574 (25%), Positives = 260/574 (45%), Gaps = 15/574 (2%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + SLAV S V D P G + G + Sbjct: 127 ARVAQRQAEQKVSILSLAVEQSPVSVIITDADGIIEYVNPKFEYTSGYLAEEAIGRQLGF 186 Query: 453 L---PYIHINDRDNFR-----TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 H +L + + + GR E D +W + I P++N Sbjct: 187 TLLSNASHAGKAAKAEEKTEGQVLWAHIRQQ-GRWGGEQCSVHKDGMLYWEYVNISPLAN 245 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +++R++ + DIT ++ E + A+ D LTG+PNR ++ ++ + S+ + +L Sbjct: 246 EEQEVIRFVSVQEDITVRRSYEEQLKNQAYYDELTGLPNRTLIMETISHAIA-SSYNTSL 304 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 ++ ID+D +K +ND LG ++GD++LV R+ + +L R G+ F ++L Sbjct: 305 PLALLCIDLDHFKNVNDTLGHSIGDELLVQAASRLAGTISSVQLLGRTGGDEFFVLLPEI 364 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 I + + P + E +T SIG A++ S +LKNAELAMY A Sbjct: 365 EGEQAIQAMVDNIMQMFVEPFIINEYPHYITVSIGAANYPEHSTDSHTLLKNAELAMYQA 424 Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F ++ ++RV I+ L +EL L+Y PII E+V EAL+ Sbjct: 425 KKAGRNQCQLFSEAINIQLNERVAIESGLRGVAARNELELLYQPIIDSNTNEVVKCEALL 484 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W G + F+ IAE+ +IK + +++++ +D+ + Q + INI+ Sbjct: 485 RWKTSDGGYVMPDVFIPIAEDTGLIKQLGEWVIQQACKDLK-YLQQHINANMKFAINISP 543 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + + + A + + SP ++L +ESV++ + ++ L L GI L++DD Sbjct: 544 NQLKETSFSQVIAAKMEEYQLSPEALELEITESVLINDLGETKANLEALCDKGIRLSIDD 603 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L YL PF T+K + S ++ + +II MA N++ ++A+ + Sbjct: 604 FGTGYSSLGYLQKYPFSTLKIDRSFVSQIEINNNNSKLTETIITMAHNLDMKVVAEGVET 663 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 E + L R CD+IQ + P+ +++ L+ Sbjct: 664 EGQQQFLKRCQCDFIQGYLYSRPVKLELLVEKLR 697 >gi|229164248|ref|ZP_04292181.1| Sensory box/GGDEF [Bacillus cereus R309803] gi|228619188|gb|EEK76081.1| Sensory box/GGDEF [Bacillus cereus R309803] Length = 885 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 175/868 (20%), Positives = 354/868 (40%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 28 SYILYFSNMKKGLPRLFWMILSVGTLSYFIGDIVVAYQRLILKDFYTF---VDPSD--FF 82 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + T L+E + L+ I + A F +Y++ ++ + T Sbjct: 83 YLLFLTSFALAF-LYEI--IYNRDLLEKLF-MICDICIIVTAQFTLSYYLLIERTIHVFT 138 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y +D FL +NL L + L S+LI++ Y + Sbjct: 139 TSYIDIFVQLTYPMVDLLFLLIGINLLFRPLSLLPKRVGALLGSALILYATTDAIYAYIK 198 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + T + + + ++ + + + + Sbjct: 199 YFTPDYSMFTVTPLYQVVLVLVAIACILHTKEPEKQEQVLLTPKFGESIRLSLPYVSVVM 258 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQP---ALVGGLVLIVILIGFTVIQHVL 391 ++ I + + M + + +++ L+ + + + + Sbjct: 259 LIVFILVENVFAPIVVIGLMITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTE 318 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 ++ + + D ++ D+ + + T+LG + + Sbjct: 319 DLVKQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 376 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + I+ D + + E R + +++ + P+ I Sbjct: 377 YYSLIYEEDLEEIIHAFHHVKKG--SSISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISG 433 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR+SF L + + VM + Sbjct: 434 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRSFHQYLEKAIARAKLTKRP-FAVMFL 492 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ RR+ ++ LARL+G+ F I++ + + Sbjct: 493 DLDRFKVINDTLGHRVGDLLLIAVARRLEQISTSNMKLARLAGDEFTILIENYKKKPDVQ 552 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + +L++A++AMY AK+RG N Sbjct: 553 KIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGKNG 612 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL LA+ N E YLVY P I + ++I+G EALI+W HP Sbjct: 613 SSLYTKELYKKIERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALIRWKHPLL 672 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+IS EF+ I EE + + ++L+ + W+ + + +N+++K+ N+ Sbjct: 673 GDISPCEFIPIVEETPQVIPLGHWVLKESCYQLRMWQ-TLGYTDLKMSVNLSAKEFQQNQ 731 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + ++ + +P + L +E + M N + + L L +L++ GI ++DDFGT S Sbjct: 732 LIENISQILQEVKVNPKSVTLELTERIAMINEQETLLRLKQLKEYGIHTSIDDFGTGYSS 791 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K L Sbjct: 792 LAYLSIFPIDTLKIPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 851 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y+Q + + PL ++ L++ Sbjct: 852 QKNNCKYMQGYYFSKPLTSKQFIRFLQK 879 >gi|319425658|gb|ADV53732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens 200] Length = 1018 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 149/557 (26%), Positives = 258/557 (46%), Gaps = 10/557 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T + I G + + G L Y IN Sbjct: 451 IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSDITGYKAKEVCGQHIRLL-YCDIN 509 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 RD + + ++ ++G+ Q E R + + + + + I + + G R + + +DI Sbjct: 510 GRDFYDKMNNAI--NQKGQWQGEMLQRRKNGEEYVIWLTINTIKDKEGMPYRRVALFSDI 567 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K++ I A D LTG+PNR+ L+ L + + + + ++ +D+D +K++ Sbjct: 568 TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKNADRNQD-HFALLFLDLDYFKEV 626 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +GD +L+ R+ ++ D++ARL G+ F ++L + + I A + + Sbjct: 627 NDTLGHEMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILR 686 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E +TASIG + + +LK+A+ AMY AK +G N F S Sbjct: 687 RIAEPYLLGEETAYITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ L E+ EALI+W H + GN+S EF Sbjct: 747 QEYAKYRMRLIQDLRQAVSNKEFELHYQPIVSLTTGEVAKAEALIRWTHAERGNVSPGEF 806 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR +WRD+ I I +N + D L Sbjct: 807 ISVAEDTGLIVEIGNWVFEQAARQSAAWRDELG-VDIQISVNKSPIQFRDEGALLHNWLE 865 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 866 LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 926 DIDYLKIDQSFTRHIDTDTNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLSAGCDY 985 Query: 935 IQDSHVASPLGFNSILK 951 Q + P+ + Sbjct: 986 GQGYLFSKPIAAIDFAQ 1002 Score = 113 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 2/158 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ V A + + + E+ L + S VWDWDI DR+ A ILG Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDRIERNARSADILGC 365 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ R W+ I DR +++ + + + E+R+ + Q W++ + Sbjct: 366 DIDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETPQHKMEYRLNTLNRQVRWILDTGK 425 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + ++N + LR G DITE K E + +A D Sbjct: 426 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 463 Score = 69.2 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 78/263 (29%), Gaps = 14/263 (5%) Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 I+ + L ++ + + + + +I + Y ++ L + Sbjct: 75 ISGLFFGGLPTLIAVALTGFYRLSIGGDAMWIGVAVIVSSGLIGVIWRQYRKSYLANISA 134 Query: 345 --ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-------IGFTVIQHVLATGY 395 +L F + + + M + + L+ L L V+ + ++ Sbjct: 135 KEMLCFAYTVHIVMLLWFFTLPLPVALPLLAKLSLPVLTVYPLATWLLSRMLSRRFELER 194 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 Q D + I + + P + +L + W Sbjct: 195 DEQIRLQDDFLFRSQFTVGNIGIAITGIDQKWMKVNPHLCQMLKYTENELLN--MTWKQL 252 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H +D + + + + + + R A D + + + +N +L I Sbjct: 253 THPDDIEADIVKFELMLAGKIDNYEMDKRFIAKDGSIVYTHMTVAC-KRANNRVLLVIAG 311 Query: 516 ANDITEQKKSLEGILCNAFQDNL 538 D+T Q +L A ++ L Sbjct: 312 YLDVTAQ--TLADREVLASREQL 332 >gi|254490544|ref|ZP_05103730.1| hypothetical protein MDMS009_876 [Methylophaga thiooxidans DMS010] gi|224464288|gb|EEF80551.1| hypothetical protein MDMS009_876 [Methylophaga thiooxydans DMS010] Length = 1123 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 150/648 (23%), Positives = 285/648 (43%), Gaps = 15/648 (2%) Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 +I++ + R+ + F+ + L + + L + Sbjct: 472 LIFNPTNSFIRSASTNLTQFALIGGFLLTGLFAFLFLSITGRTHRISTEVTLRTEELSEA 531 Query: 386 VIQHV---LATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + + + + ++ L A + + + D + + + I G Sbjct: 532 TKRAQDSEMRIRDVLKEMQLTEQKLLLSDVAFNSTSEAMMITDKSKKIIVVNSAFSDITG 591 Query: 440 LASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G ++L + +D + + G + E + R D + Sbjct: 592 YDGTEVIGRYPSFLVSGLTKSDFQQLSESFAAAMKAY-GIWRGEIQCRHKDKTMFPAYVS 650 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + +++G+I +G+ +DI+E K++ I +A D LT +PNR+ F DRL + Sbjct: 651 MSAVYDTDGNICNMVGVFSDISEVKEAQAKIERHANYDILTDLPNRRLFTDRLQQAILRC 710 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 N + +M +D+D++K +ND LG GD +L + RI ++ D +ARL G+ F Sbjct: 711 GRH-NEKLCLMFLDLDRFKDVNDTLGHEFGDQLLKQMAVRIQACVREVDTVARLGGDEFT 769 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 IIL + + A + I PI + E+ + VT S+G + I S +++NA+ Sbjct: 770 IILSEFDGKSHAVNIAQKLISEIEKPITVQEQTLRVTTSVGITFYPDDAIDSGMLIQNAD 829 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE-I 735 AMY AK GG+ + + S I +L A+E E+ + Y P+I E Sbjct: 830 RAMYAAKDMGGSAFKFYTTELELSWLSRTFILNELEAAIEKGEIEVYYQPLIPANTETAC 889 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 EAL++W HP+ G IS ++F+ AE + MI+ I+ F+ ++ + I +W+ + Sbjct: 890 QSAEALVRWQHPERGLISPADFLPQAERMGMIEKIDDFVFSQVCQQIKTWQANGIG-DVH 948 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N ++ + + A I + + I L +ESV+M S LL +LR+ G Sbjct: 949 VSVNRSAHNFGNQRGRLDWLAYIREQGINAGLITLEITESVLMRRHAESGHLLKKLRQAG 1008 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 + + +DDFGT S LSYL + D +K + S + + AI+ +I MA+++ + Sbjct: 1009 VQIAVDDFGTGYSSLSYLKEMDIDYLKIDRSFIRDLEADDNDRAIIEAITGMARHLGIEV 1068 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 IA+ + + L ++GC ++Q A P+ + + L +K Sbjct: 1069 IAEGVETLSQKEILEKIGCHWLQGYFFAKPMPVDVFEEFLASANNALK 1116 >gi|71907538|ref|YP_285125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71847159|gb|AAZ46655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 832 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 130/589 (22%), Positives = 257/589 (43%), Gaps = 33/589 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIATILG 439 + + + + V + W D+ + ++LG Sbjct: 244 IVLSRDITDRKNAEHALRESESLMRAIVDNTPVEYWARDLEGRCIMENALVVEHWGSLLG 303 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + ++ ++ + E++V Q + Sbjct: 304 KRPED---------SGVSPDELAVWQENNRRVYEGEVIEAEVEYQV---GGQTRIFNNVV 351 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 P+ +G + +G DIT++K++ E I AF D+LT +PNR+ DRL L SA Sbjct: 352 APIK-VDGQTIGIVGFNQDITDRKRNEEEIHRLAFYDSLTHLPNRRLMFDRLEHALIGSA 410 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 +++ID+D +K +ND G VGD++L+ + +R+ ++ D ARL G+ F + Sbjct: 411 RR-KSHGALLLIDLDNFKFLNDTHGHEVGDELLLEVAKRLKTCIRQGDTAARLGGDEFVV 469 Query: 620 ILISENNSL----KIADFAIAMRKSIAMPINLL------EREITVTASIGFASWTSSKIT 669 IL + + + A ++ + P +L+ + +SIG A + + +T Sbjct: 470 ILEDIDGAGNGTIQAELIAGHIQAQLNHPFSLVRPPERLSIDYRCASSIGIALFDDTMVT 529 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPI 727 + E+L+ A+ AMY AK G N + F + R ++ +L A++ + +L + Sbjct: 530 AKELLRRADTAMYQAKAAGRNTLRFFDPEMQAAVTHRAALETELRKAIDEQQFHLCFQVQ 589 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + G EAL++W+HP G I + F+ +AEE +I I ++L R + +W Sbjct: 590 MD-QSGRPTGGEALLRWEHPTRGTIPPASFIPLAEETGLIVPIGQWVLATACRQLAAWSQ 648 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 Q + + +N++++ + ++ L+ +T +R+KL +ES+++ + E Sbjct: 649 QPETSGLTLAVNVSARQFRQARFTDQLRDLLLQTGAPATRLKLELTESMMLEDTEAIIGR 708 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPM 905 + L+++GI +LDDFGT S L+YL +P + +K + S + + AI +I+ + Sbjct: 709 MAELKQLGIRFSLDDFGTGYSSLAYLKRLPLNQLKIDQSFVRDVLTDPNDAAIAETIVAL 768 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + +IA+ + + + L +GC Q PL + L+ Sbjct: 769 GNILGLEVIAEGVETDAQWRFLANVGCKNYQGYLFGRPLPLLEFEQFLQ 817 Score = 51.9 bits (123), Expect = 6e-04, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 52/148 (35%), Gaps = 5/148 (3%) Query: 381 LIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 ++G + + + + + + + + D++++ DI + + +L Sbjct: 115 IVGLASVATDITDRKRQELELIALKNKFAATLQALPDLMFELDIEGQFLDCHAQQSKLLV 174 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + M G + + + F L + F++ + + + Sbjct: 175 GSPSDMVGKTVH--EVLPPDVAAIFIQSLHEAMEQGISTGSQ-FQLDLPEGSRRFELSVA 231 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLE 527 + S+ + +I ++ DIT++K + Sbjct: 232 QKASDGDHQP-HFIVLSRDITDRKNAEH 258 Score = 47.6 bits (112), Expect = 0.011, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 4/116 (3%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + +LG + + G + L ++ D + Sbjct: 26 VFAKNLNGLYIYANEMAGIMLGRPAPEILGRKDSELF---ASELAGRMQTCDDKLLASGE 82 Query: 478 RLQYEFRVR-AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 E + + + + + G I+ +A DIT++K+ ++ Sbjct: 83 SASCEIWLPDRGHGGERCYWLVRKVLRDKKGQIVGLASVATDITDRKRQELELIAL 138 >gi|224826409|ref|ZP_03699511.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] gi|224601510|gb|EEG07691.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] Length = 1072 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 156/576 (27%), Positives = 271/576 (47%), Gaps = 13/576 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMH 446 V Q I + + A+ S + V D + P I G A ++ Sbjct: 481 VEQDITAQQVIDLELRVRQRAIEASVNAVLITDNRRPDNPIIYVNPAFERITGYARATVI 540 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G +L + T + + R R D W +R+ P+ +S Sbjct: 541 GRNCRFLQG--RDTAQPELTAIRRALENRHEGKAL-LRNYRKDGSMFWNELRVAPVRDSQ 597 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G++ YIG+ ND+TE K+ E + A D LTG+PNR DRL + ++ + R Sbjct: 598 GEVSHYIGVLNDVTEAKRYQEELERQANFDTLTGLPNRNLLQDRLGQGIAVA-RSKDERF 656 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V ++D+D +K +ND LG +GD +L+ + RRI + ++RL G+ F ++L Sbjct: 657 AVALLDLDNFKYVNDSLGHTLGDALLIEVARRIESSVPALATVSRLGGDDFVLLLPGVKT 716 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + ++ + + P+ L E+ ++ASIG + + E+L NA+ AMY AK Sbjct: 717 AEQLDLALKNVTDQLNQPVELSGTELFLSASIGCCFYPDDGSSVDELLSNADTAMYQAKA 776 Query: 687 RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G + V F ++ RV ++ L A+ EL + Y P + L + + G EAL++W Sbjct: 777 LGKSQVRCFALHMNDRVQRRVELEGALRRAIAQDELTMYYQPQLDLQSDRLCGFEALLRW 836 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 + IS EF+ IAEE +I+ I+ +++ + R + WR + P + INI++ Sbjct: 837 RRGER-LISPLEFIPIAEETGLIREIDRYVIRAVFRQVEEWRAEGLDPG-EVAINISALS 894 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L + + + A ++ P IKL +ES++M N + ++ ++ L+ + + ++DDFG Sbjct: 895 LQEAGIVPYIAAEMASRRLPPDAIKLEVTESLLMKNVDTAQQVMSELKALHLKWSIDDFG 954 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL PFD +K + S + + ++ R+II MA+++ +IA+ + Sbjct: 955 TGYSALSYLRRYPFDQLKIDKSFIDDVNVNPENASMTRAIISMARSLRIAVIAEGVENRE 1014 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + L GCD IQ + + PL + L R P Sbjct: 1015 QLGFLVEAGCDQIQGYYYSPPLTAEACRPWLIHRGP 1050 Score = 55.3 bits (132), Expect = 5e-05, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 11/167 (6%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 +L + + + L +V + + + + VW Sbjct: 330 QLAVALARARMFESLESLVAERTRALRSEMGERARAEAALRQSEALLHKVLETLPVGVWV 389 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWL----PYIHINDRDNFRTILDSFVGYRR 476 D + + I G G+ P R W I +DR+ RT + + Sbjct: 390 TDEKGGILLHNSEGERIWGANPGT--EPQRRWYGPQGQQIATDDRELLRT-----IRHDG 442 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 ++ + D ++ P+++ + + I + DIT Q+ Sbjct: 443 TVHNLVRQILSFDGAARTVLDAEVPLTDDDDQVRGGILVEQDITAQQ 489 >gi|24373074|ref|NP_717117.1| sensory box protein [Shewanella oneidensis MR-1] gi|24347254|gb|AAN54561.1|AE015596_1 sensory box protein [Shewanella oneidensis MR-1] Length = 998 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 151/556 (27%), Positives = 262/556 (47%), Gaps = 10/556 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T I G + + G + Y +N Sbjct: 442 IEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMM-YCDLN 500 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + ++ + D +G Q E R R +N+ + + + I + + +G R + + +DI Sbjct: 501 GHEFYQQMNDDIRN--KGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDI 558 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K+S I A D LTG+PNR+ L+ L+ + + + N +M +D+D +K++ Sbjct: 559 TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRN-HFALMFLDLDYFKEV 617 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A+GD +L+ R+ ++ D++ARL G+ F ++L S + I A + + Sbjct: 618 NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILR 677 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 678 RIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 737 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + DL AV N E L Y PI+ + E++ EAL++W HP+ G++S +EF Sbjct: 738 QEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEF 797 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR WR + I I +N + D L Sbjct: 798 IPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVE-IQISVNKSPIQFRDEGALLHNWLE 856 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 857 LLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 916 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S E + +II MA + +IA+ + E + L R GCDY Sbjct: 917 DIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDY 976 Query: 935 IQDSHVASPLGFNSIL 950 Q + P+ + Sbjct: 977 GQGYLFSKPVSASEFA 992 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 2/158 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ + V A + + + E+ L + S VWDWDI D + A ILG Sbjct: 297 LLVISGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILGC 356 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ R W+ I DR +++ + + + E+R++ + W++ + Sbjct: 357 DIDMLNANSRQWMDSIVAEDRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGK 416 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + ++N + LR G DITE K E + +A D Sbjct: 417 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 454 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 38/318 (11%), Positives = 92/318 (28%), Gaps = 12/318 (3%) Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYIT 286 V Y +I + L + + +A+ S+ ++ V + Sbjct: 11 VFLYDAIPKKHQRQYFLLWRLGIGVLIGGIGVAIMSTPWMYEPGIIFDTRSVLLCVSGLF 70 Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 F G+ + + Y + + + I+ +I+ + A + I Sbjct: 71 FGGLPTAIAVVITALYRLSIGGVAMWVGVGVIITSGLIGVIWRHYRKAHLASISGTEVIS 130 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL------IGFTVIQHVLATGYFSQGI 400 + ++ L + P L + I+++ + ++ Q Sbjct: 131 FAFLVHLVMLSWFFLLPGQHVVPVLSKITLPILLIYPLATWLLSRLLSRRFELERDEQIR 190 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 D + I + + P + +L + + W H +D Sbjct: 191 LQDDFLFRSQFNIGNIGIAITGIDQKWIKVNPRLCQMLKYSEDELLH--MTWKQLTHPDD 248 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 D + + + + R A + + + + +N +L I D+T Sbjct: 249 LDADVAKFEQMLAGNIDNYELDKRFIAKNGSLVYTHMTVAC-KRTNHQVLLVISGYLDVT 307 Query: 521 EQKKSLEGILCNAFQDNL 538 Q +L A ++ L Sbjct: 308 AQ--TLADREVLASREQL 323 >gi|114320798|ref|YP_742481.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114227192|gb|ABI56991.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 1052 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 143/558 (25%), Positives = 253/558 (45%), Gaps = 11/558 (1%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDR 461 + S V V D P I G + G R + + Sbjct: 495 ALRKLSAVVEQGPGAVMITDPQGVIEYVNPAFERITGYTAEEAVGQTPRIIQSGLMPSSW 554 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 +R + + R EF R + W + P+ + G I YI I D+TE Sbjct: 555 --YREMWAAL--NRGEPWWGEFHNRRKTGELFWEAGVVFPLRDDQGGITHYIAIKQDVTE 610 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-SATDDNLRPTVMVIDIDKYKKIN 580 +K + + +A D +TG+PNR +DRL T + + ++V+D+ +++KIN Sbjct: 611 RKDAERRLEYHATHDTVTGLPNRALAMDRLETAVRRLAHRRGRGSGALLVLDLSQFRKIN 670 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 + LG A GD++L + R+ L D L R G+ F +IL + + A A+ + Sbjct: 671 ESLGHASGDELLCRIAERLQGALGPHDTLCRPGGDEFLVILPELRTARQAEQVAKALLAT 730 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVS 698 + P+ L ++EI + A +G + SS +L+NA A+ AK RG + Sbjct: 731 LKAPLVLADQEIFMDARVGVTLFPEDGTDSSTLLRNAYAALSQAKQVARGDFRFFKPEAN 790 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++ L A+E L+LV+ P++ G E L++W + G +S EF+ Sbjct: 791 ERAHRWLALEGRLRRALEQETLHLVFQPLVDARTLRPTGFETLLRWTLEEHGPVSPGEFI 850 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I + ++L + + WR Q + +N++ + ++ ++ + Sbjct: 851 PMAEETGLIIPMGEWVLRKACQQAARWRAQTGHC-YRMAVNVSPIQITGSDFVATVRTSL 909 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T ++L +E +++G R L LR +G+ L+LDDFGT S LSYL +PF Sbjct: 910 RRTGLPAECLELEITERMLLGGQRRVLQSLQALRDLGVGLSLDDFGTGYSALSYLRQMPF 969 Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + S + G+ + +L SII MA+ + ++A+ + E + L R GCD +Q Sbjct: 970 SVLKIDRSFVQGAAAGPRGEQLLCSIIGMAQGLGLRVVAEGVETEAQVALLQREGCDLLQ 1029 Query: 937 DSHVASPLGFNSILKLLK 954 H A P+ ++ +LL+ Sbjct: 1030 GYHFARPMAAEAVTRLLQ 1047 Score = 63.4 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 7/191 (3%) Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 + F +G V +P +L + ++ R Sbjct: 278 ALARGEAFGRALEYRGQGYLVAFVP--MLDARGEVVGYVVGYGRTGALGSLKHQFYAGAA 335 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +L+ +L +G D R + ++ +D T+ Sbjct: 336 FALLLVLGAGGVLLRFLAVQRGRLQDEARLRAISDTMNEGMYVFDGEGRITHVNRAAETL 395 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTI----LDSFVGYRRGRLQYEFRVRAADNQFH 493 LG + + G + L + H + + V R +L E R D Sbjct: 396 LGYRASELIGAHAHDLFHAHGPEGQYMPAAECPVYRAAVRGERLQLDSE-WFRRRDGSHV 454 Query: 494 WMIIRIRPMSN 504 + I P+ + Sbjct: 455 PVQIFGAPIGD 465 >gi|114049083|ref|YP_739633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] gi|113890525|gb|ABI44576.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] Length = 1466 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 136/571 (23%), Positives = 269/571 (47%), Gaps = 12/571 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + + A + + V D+ + I+G ++ G + Sbjct: 903 LQRQLEDEINLLAQAFENTSEGVLILDVDENIRVANHAAQQIIGSEQHNLVGQSFSQFVQ 962 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +D + + + E + + + + + M +++ L Y+ + Sbjct: 963 M----KDGLSAEVHQLL-GQDSSWTGERELVGQNGVICPVWLNVSVMQSASDSSLHYVIV 1017 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DITE+K++ + A D LTG+PNR F RL + ++ + ++ +D+D+ Sbjct: 1018 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQMAQQSGE-KLALLFLDLDR 1076 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G ++GD +LV + R+ + +L R G+ F I+L + NN +I A Sbjct: 1077 FKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLRNANNLNEINHIAE 1136 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + I P L RE ++ SIG + W + +KNA+LAMYHAK G + + + Sbjct: 1137 RLLAQIVAPFKLFGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFKYY 1196 Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752 ++ + ++ DL A+E E L Y P I + ++ +G+EALI+W HPK G I Sbjct: 1197 SSERNAQALYHLRLEADLRKAIEREEFELYYQPQIDILRGDKFIGMEALIRWRHPKEGYI 1256 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AE ++ I+ ++ R D W + + +NI++ + + Sbjct: 1257 RPDIFIKVAEACGLVVEIDRWVFRRACLDGAKWVKRCA-TQFKLSVNISAVHFRQPDFID 1315 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 G++ +++ T S + L +E V+M + ++ L +L+++GI + +DDFGT S L+Y Sbjct: 1316 GIKKILADTQMPASSLGLEITEGVLMKEVQAAKSHLTQLKELGIEVAIDDFGTGYSSLAY 1375 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L + +T+K + S + AI+ SII +A+N++ T++A+ + ++++ Sbjct: 1376 LRHFDVNTLKIDRSFLIDIATNSADQAIVSSIIELARNLKLTVVAEGVETVEQLEQVFSR 1435 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 GC +Q + A P+ + L ++ L Sbjct: 1436 GCYIVQGYYFAKPMSVTDFERYLLQKSTLSS 1466 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ +I + + + + V +Q + +R ++ GS +W+W Sbjct: 754 LLLVFSIIALSLAWYRQRQVRTFMAMNQALTESDDRLRQSLRGSDSDLWEWHRDTQSFYL 813 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 ++LG + + + +H DR +S + R + E+R + Sbjct: 814 DNR-GSVLGSHANEIVATLETLP--VHPEDRGKALAQWNSMLAGEIDRFEAEYRYQRRSG 870 Query: 491 QFHWMIIRIRPM-SNSNGDIL-RYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP+ N ++ R GI +DIT Q++ + I A Sbjct: 871 NWGWLRVRGRPVARNKQTQVIERVAGIYSDITLQRQLEDEINLLA 915 >gi|257062144|ref|YP_003140032.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256592310|gb|ACV03197.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 726 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 144/644 (22%), Positives = 288/644 (44%), Gaps = 10/644 (1%) Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376 + G + +L+ + + +T + D + + Sbjct: 74 LPGFNGLQALKMLQEAGQKIPFILVTGSLGEEAAVECMKAGVTDYIVKDRLFQLPTILMR 133 Query: 377 LIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 + Q V+ ++ + + +R + + DI+ +P + Sbjct: 134 SLEEFALRREQQRVMEERRQAEIALRASEKRFRALIENASDIILIVAPDSQLTYASPSVE 193 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHW 494 +LG + S+ G + IH +++ D +L +FRVR + + Sbjct: 194 RVLGYDASSLTGQ--RFFDLIHPDEQGEIIGFFDKIKETSNLSQLLPDFRVRTQKDTWVI 251 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + + + + ++ +DITE+ ++ E + +A D LTG+ NR + L +L Sbjct: 252 LEAIAKNLQ-EDPAVGGFVVNCHDITERHQTAEQLRYDASHDKLTGLANRSALLKQLKRA 310 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 ++ ++ +D+D++K IND LG +GD +L + +R+ + D+LAR G Sbjct: 311 IEQKKRRKEDHFALLFLDLDRFKVINDGLGHLMGDQLLKEMAKRLQRCHREGDLLARFGG 370 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F L + A + +++ P L +E+ ++ASIG + +ML Sbjct: 371 DEFVFFLKEIRQQEQAIVVAERIHQALREPFILNHQEVFISASIGITLSADHYDSPEQML 430 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A+ AMY AK RG F + ++ ++ DL A++ EL + Y PI L Sbjct: 431 RDADTAMYWAKARGQGGHTIFAPTMHLSALKQLHLESDLRQAIQRQELVVYYQPIFSLDT 490 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 ++IVG EAL++W P+ I ++F+ +AEE +I I+ ++L+ + + W+ + Sbjct: 491 QKIVGAEALVRWQPPEKPLIPPNDFIPLAEETGLILEIDHWVLKSACQQLYQWQQEFKTL 550 Query: 793 -PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 P FI +N++ K L E + I +T + +K+ +E+V + N +L +L Sbjct: 551 APQFISVNLSPKQFSQPNLTEKIAQTIKETGLAEQCLKIEITETVFLENSTSVLEILCQL 610 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909 +++ I + LDDFGT S LSYL P +++K + + ++ + K I+R + +A + Sbjct: 611 QQLNIQICLDDFGTGYSSLSYLHQFPLNSLKLDRTFVSRLGKTNKNDTIVRIVATLANEL 670 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + +IA+ I I+ L +G + Q + P+ NS ++ L Sbjct: 671 DLELIAEGIEEIEQIQLLHYLGYQWGQGYCFSPPVDSNSFIEFL 714 >gi|207739719|ref|YP_002258112.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] gi|206593101|emb|CAQ60007.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] Length = 636 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 152/567 (26%), Positives = 263/567 (46%), Gaps = 23/567 (4%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 V + + D R P A +LG++ ++ G I++ D +D Sbjct: 57 MVNALTEGLLVCDAQRRVTYANPSAARLLGVSLDTLVGLRLPEAVGAAIDEFDTPIRDID 116 Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513 + R +L F +R D + W+ P+ G+ + Sbjct: 117 WPDGDVLADGRPQLNQIFGLRCLDGRTVWVSTNWTPLYAEAGEPATASPAGRHAQPYAVL 176 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DIT+ +++ + I A D LTG+ NR + DRL L L+ + R +VM +D+ Sbjct: 177 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-GTRVSVMFLDL 235 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K IND LG GD +L + R+ + D +ARL G+ F ++L S + + Sbjct: 236 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGMGTRRV 294 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + +I P ++ +E+ V SIG A + +L+ A+ AMY AK RG N+ + Sbjct: 295 AERILAAIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 354 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 +F S R I+ L A + +E Y Y P + + IVG+EALI+W+ +G Sbjct: 355 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSADFGR 414 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + +F+ AEE +I I+ ++L + WR +P + + IN++ + +L Sbjct: 415 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 473 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ ++ + ++L +E +++ + LL LR +G+SL LDDFGT S LS Sbjct: 474 GMVRGALTNSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSLS 533 Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + S + +R AI R+II MA+ + +A+ + ++ L Sbjct: 534 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLRE 593 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD Q + PL ++ L++E Sbjct: 594 IGCDEYQGYLLTRPLEPAAMHDLVREH 620 >gi|325983415|ref|YP_004295817.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nitrosomonas sp. AL212] gi|325532934|gb|ADZ27655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nitrosomonas sp. AL212] Length = 753 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 152/592 (25%), Positives = 266/592 (44%), Gaps = 17/592 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 L ++ IG +I L ++ ++ + S + + D + + Sbjct: 169 HRLPSAFHRKLLKIGSFIIGIALEQQKINEQLYLSSK----VFENSTEAIMIADANKIII 224 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 +T + I G + + G + + I H F + V G Q E R Sbjct: 225 STNKALHIITGFTAEEVIGKPTSIVTSIRHS---TKFFQKIWLSVKQ-SGHWQGEVWNRH 280 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + + + I + + G I Y+ ++IT++KKS E I A D+LTG+PNR F Sbjct: 281 KYGREYPAWLNISSVLSKKGSICYYLINFSNITDKKKSDEIIWRQANYDSLTGLPNRNMF 340 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 DRL+ + +A + V+ ID+D++K++ND G +VGD +LV +R+ ++ D Sbjct: 341 YDRLSHDIKNAART-GMLLAVLFIDLDRFKEVNDSFGHSVGDALLVEAAKRLNGCVRETD 399 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +ARL G+ F IIL N+ + + P +L + VTASIG + + Sbjct: 400 TVARLGGDEFTIILNGINDQHCAERIIQMILLELTKPFHLNAKLAYVTASIGVTFFPADA 459 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYH 725 ++ ++KNA+ AMY AK+ G N F + + R I +L A+ +L+L+Y Sbjct: 460 GSAEILMKNADQAMYAAKNNGRNCCSYFTSNMRKATETRSRIAYELRHALREQQLFLMYQ 519 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI++L I EAL++W HP+ G +S EF+ IAEE +I I ++ ++ + +W Sbjct: 520 PIVKLATGSIHKAEALVRWQHPERGTVSPVEFISIAEESNLISEIGDWVFKQAVNQVAAW 579 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + I IN + K + + + I + +E++++ E Sbjct: 580 QANY-NTNFQISINKSPKQFISK--MSDWVNHLHEQKLDGHSIIVEITENLLLDVHELVV 636 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903 L R G+ + +DDFGT S LSYL D +K + S ++ + ++I Sbjct: 637 KQLLNFRDAGVQVAIDDFGTGYSSLSYLKKFDIDYLKIDQSFISNLDSRSNDRILCEAVI 696 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 MA + +IA+ + + + L MGCDY Q + PL + L++ Sbjct: 697 TMAHRLGMKVIAEGVETDSQKQLLIAMGCDYGQGYFFSKPLTTENFEVFLQQ 748 >gi|148548982|ref|YP_001269084.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148513040|gb|ABQ79900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida F1] Length = 1098 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 144/583 (24%), Positives = 265/583 (45%), Gaps = 18/583 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441 T ++ + + S E+ + A S D + + R + + G + Sbjct: 515 SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEINDGFCRLTGYS 574 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + G + I +D+ + L + + R E R + + + P Sbjct: 575 TADVIGHTVYEI-GIWADDKQR--SALLAELHERGRVHHREMLGRNKRGDILTVEVSVEP 631 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 ++ ++ + A D+++ K + I A+ D LT +PNR +DRL+ + L Sbjct: 632 ITL--NEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 NLR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F ++L Sbjct: 690 -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748 Query: 622 ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 K+ + A +R+ +A P++L + + VT SIG A T +++LK Sbjct: 749 SGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKR 808 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N + F + S+R+ ++ DL LA+ EL L + P + D Sbjct: 809 ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792 IVG E L++W HP G S+F+ + EE +I + ++L+ Sbjct: 869 IVGAEVLLRWHHPLLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 928 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + N+ + + + L +E +V+ N E + + L+ Sbjct: 929 DFSLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMRELK 988 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 + G+S +DDFGT S L+YL +P D +K + S + + I+R+I+ MA++++ Sbjct: 989 RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLD 1048 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + + L R+GC Q + PL ++L Sbjct: 1049 LAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLLEFRQML 1091 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 55/157 (35%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 G+ L + + Q + ER LA+ + WDW I + + Sbjct: 250 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 A + GL H + + +R++ R S G Q +RV+ + Sbjct: 310 ARAAQLHGLPPIPFHESFDAFFEGVPEQERNSMRQAYRSLREGPAGNYQITYRVQLENGT 369 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ R R + G LR G DIT+Q + + Sbjct: 370 SRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQR 406 Score = 94.2 bits (233), Expect = 1e-16, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 S+ + + + A+ G+ W WDI RV+ + + G ++L + Sbjct: 22 SEQAWQNAPQLLAALNGARLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 81 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR R + + V R+R D HW+ I + +G IG+ Sbjct: 82 PEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQ-MIGVI 140 Query: 517 NDITEQKK 524 +IT Q++ Sbjct: 141 REITRQRE 148 Score = 46.1 bits (108), Expect = 0.027, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 15/166 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + Q + + E+ + S D + + + P G +S Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSS 450 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + + + + I + + + +I R + Sbjct: 451 EQVLGRTAEEI-GLWAESVERAKRIEQVIREQALSNVAVV--LNHRNGAPMTCVISSRLI 507 Query: 503 SNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539 + + + DIT+Q+++ E AF D +T Sbjct: 508 TVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551 >gi|229170057|ref|ZP_04297748.1| Sensory box protein [Bacillus cereus AH621] gi|228613404|gb|EEK70538.1| Sensory box protein [Bacillus cereus AH621] Length = 735 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 165/734 (22%), Positives = 317/734 (43%), Gaps = 32/734 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + + + T + LF ++ + Sbjct: 6 TWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHLFQLNAGMETSS 65 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGLW- 355 I ASI+L I+Y K ++ ++P + +I + ++ Sbjct: 66 EVSYLIHTASILLIGLSSILYILDKPIQHKTKTKYYRFDYVRFILPYFSIIITFSFIVFQ 125 Query: 356 -----MAITKRLDNDIIQPALVGGL----VLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 + + + I+ + ++ Q + + +R Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQR 185 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + +I D + + Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDPQDHELLKK 243 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++ + I P+ N +++ GIA DIT + Sbjct: 244 SLQITKEGRPQTL--EIRTKEKEGYYYHLHITFIPIF-INKEVVGMFGIARDITTLYEKQ 300 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L TIL+ + N VM +D+D++KKIND LG Sbjct: 301 KQVEHMAFHDALTGLPNRRKFEKDLKTILNTAQNTTN-DVAVMFLDLDRFKKINDRLGHD 359 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ DI+AR G+ F I+L + + A + + P Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFMAEQILTILNKPYL 419 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + + E++VT SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 420 IKDEELSVTPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFIFFSKEMSIAQNEI 479 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 480 HFLEGELSKALQQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 540 GFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHADLISTISKVLEETELK 598 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + L L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 599 PEALDIEITESIAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E K L CD+IQ + Sbjct: 659 REFICGITNSPLEEAIIASIIKLSKELNLEVIAEGVETEEQWKFLHEQNCDHIQGFLFSK 718 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 719 PVSSKDVWMLLHKK 732 >gi|328471642|gb|EGF42519.1| hypothetical protein VP10329_00765 [Vibrio parahaemolyticus 10329] Length = 811 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 141/552 (25%), Positives = 261/552 (47%), Gaps = 17/552 (3%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + + I G ++ + G N L H +D Sbjct: 267 QLSLASKIFNNSQEGMVITDSNANIIDVNNAFSQITGFSAEEVIGKNPNILRSGHHDD-- 324 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F L + + G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 325 AFYQQLWQQLETK-GQWKGEFINRKRDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR + L +++ + +DID +K IND Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQ-----PFATLFLDIDHFKHINDS 438 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F I+L + + + ++ Sbjct: 439 MGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGDSPLLETLSSILGVFR 498 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P +L + + ++ SIG A + + S +LKNA+ AMY AK G N + Sbjct: 499 RPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 558 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V I+ L A+E +L+LVY P L I+G+EAL++W+HP++G + ++F+ Sbjct: 559 KSVSHVRIQSALHEAIEKEQLHLVYQPQYNLAQNAIIGVEALVRWEHPEFGLVPPADFIP 618 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I++I ++L+ W + I +N+++ L + ++ ++ Sbjct: 619 IAEKTGLIQSIGEWVLKDACLQGTDWLARGVQFG-KIAVNVSALQLQQSRFINKLKTILR 677 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + R++L +ES ++ +P+ + L +L ++GI ++LDDFGT S LSYL +P + Sbjct: 678 ETGFPAHRLELEITESFLLIDPKLAIASLNQLCELGIEISLDDFGTGYSSLSYLKGLPIN 737 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ + AI+ +II M + ++A+ I + L GC Y Q Sbjct: 738 KLKIDRSFVSDVPNDNDSNAIVNAIIAMGTTLSLKVVAEGIETPEQVAYLVDKGCIYGQG 797 Query: 938 SHVASPLGFNSI 949 + P+ + Sbjct: 798 YLFSPPVAAEKL 809 Score = 45.3 bits (106), Expect = 0.051, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%) Query: 421 WDIVRDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W D + + ++ + G + F V Sbjct: 160 WIKTTDGLYAMTNRSVEQAWKKSNDDIVGKND--FDLFSAERAEKFIDADRLVVATGTQN 217 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + E R +N W+ P+ N GD++ +G+ +IT ++K +E L A Sbjct: 218 IVEECRQIDENNNPTWLETIKSPVRNQAGDLIGILGMTRNIT-RRKMVETQLSLA 271 >gi|89901264|ref|YP_523735.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89346001|gb|ABD70204.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 735 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 150/580 (25%), Positives = 280/580 (48%), Gaps = 21/580 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + S + V S DI++ D + +LG + + G + Sbjct: 158 ENRHIAWQLESSERKYRYLVDSSPDIIYTLDHEGRFTFVNDRVQQLLGFSREELIG--EH 215 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMS------ 503 + I +D + + G R E R+ R A + + +S Sbjct: 216 YSVLIQEDDVLRANYVFNEGRGDYRLSRNVELRLKSRHAKGEVRTFTHELMTISFNASDT 275 Query: 504 -----NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 ++ ++ G+A DIT++K++ E I A+ D LT +PNR F DRL + + Sbjct: 276 SQEPDSTQQELFGTYGVARDITDRKRADELITYQAYHDILTDLPNRVLFKDRLGLAVLQA 335 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 +D +M ID+D++K +ND LG +GD +L R+ L+ D LARL G+ F Sbjct: 336 KRND-ASLALMFIDLDRFKLVNDTLGHVIGDKLLQQAAIRLKACLRSGDTLARLGGDEFT 394 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 +L ++ A + + P L + + ++ASIG A + ++ E+++N++ Sbjct: 395 AVLPELSDRQDAVLIAEKFLECLRQPFQLAGQSVHISASIGIAIYPGDGESTDELIRNSD 454 Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMYH K G N F S ++ ++ L LA+E EL + Y P + + ++IV Sbjct: 455 IAMYHMKAEGKNGHSFFDRSMLDASCQKIELEHSLRLALERGELEMYYQPQVDVRTQKIV 514 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W+HP+ G + + +F+ AEE +I I +MLE I D++ W P+ + Sbjct: 515 GAEALMRWNHPERGFLGAGDFLPFAEENGLIIPITDWMLEAICLDLLDWNAAGG-EPVRL 573 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ + L + + ++ ++ + S+I++ +E++ + NP+ + L +L ++G+ Sbjct: 574 SLNLSPQYLDRGDFFDKLKNALTLHHINASQIEVEVTENICIHNPQTAIEQLNKLCQLGV 633 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTII 914 S+ +DDFGT S LSYL P T+K + S + ++ +II +AK + ++ Sbjct: 634 SVAIDDFGTGYSSLSYLHRFPIHTIKIDRSFVMKIQNDNSQCPVVLAIISIAKGLSLNLV 693 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + ++ + L R GC+ +Q PL +L LL+ Sbjct: 694 AEGVETQVQERYLERSGCNTMQGYLYHKPLSQKKMLALLR 733 >gi|146292356|ref|YP_001182780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella putrefaciens CN-32] gi|145564046|gb|ABP74981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens CN-32] Length = 1018 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 149/557 (26%), Positives = 258/557 (46%), Gaps = 10/557 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T + I G + + G L Y IN Sbjct: 451 IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSDITGYKAKEVCGQHIRLL-YCDIN 509 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 RD + + ++ ++G+ Q E R + + + + + I + + G R + + +DI Sbjct: 510 GRDFYDKMNNAI--NQKGQWQGEMLQRRKNGEEYVIWLTINTIKDKEGMPYRRVALFSDI 567 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K++ I A D LTG+PNR+ L+ L + + + + ++ +D+D +K++ Sbjct: 568 TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKNADRNQD-HFALLFLDLDYFKEV 626 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +GD +L+ R+ ++ D++ARL G+ F ++L + + I A + + Sbjct: 627 NDTLGHEMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSTMADHKGIERVAEHILR 686 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E +TASIG + + +LK+A+ AMY AK +G N F S Sbjct: 687 RIAEPYLLGEETAYITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ L E+ EALI+W H + GN+S EF Sbjct: 747 QEYAKYRMRLIQDLRQAVSNKEFELHYQPIVSLTTGEVAKAEALIRWTHAERGNVSPGEF 806 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR +WRD+ I I +N + D L Sbjct: 807 ISVAEDTGLIVEIGNWVFEQAARQSAAWRDELG-VDIQISVNKSPIQFRDEGALLHNWLE 865 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 866 LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 926 DIDYLKIDQSFTRHIDTDTNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLVSAGCDY 985 Query: 935 IQDSHVASPLGFNSILK 951 Q + P+ + Sbjct: 986 GQGYLFSKPIAAIDFAQ 1002 Score = 113 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 2/158 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ V A + + + E+ L + S VWDWDI DR+ A ILG Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDRIERNARSADILGC 365 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ R W+ I DR +++ + + + E+R+ + Q W++ + Sbjct: 366 DIDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETPQHKMEYRLNTLNRQVRWILDTGK 425 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + ++N + LR G DITE K E + +A D Sbjct: 426 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 463 Score = 68.8 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 78/263 (29%), Gaps = 14/263 (5%) Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 I+ + L ++ + + + + +I + Y ++ L + Sbjct: 75 ISGLFFGGLPTLIAVALTGFYRLSIGGDAMWIGVAVIVSSGLIGVIWRQYRKSYLANISA 134 Query: 345 --ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-------IGFTVIQHVLATGY 395 +L F + + + M + + L+ L L V+ + ++ Sbjct: 135 KEMLCFAYTVHIVMLLWFFTLPLPVALPLLAKLSLPVLTVYPLATWLLSRLLSRRFELER 194 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 Q D + I + + P + +L + W Sbjct: 195 DEQIRLQDDFLFRSQFTVGNIGIAITGIDQKWMKVNPHLCQMLKYTENELLN--MTWKQL 252 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H +D + + + + + + R A D + + + +N +L I Sbjct: 253 THPDDIEADIVKFELMLAGKIDNYEMDKRFIAKDGSIVYTHMTVAC-KRANNRVLLVIAG 311 Query: 516 ANDITEQKKSLEGILCNAFQDNL 538 D+T Q +L A ++ L Sbjct: 312 YLDVTAQ--TLADREVLASREQL 332 >gi|71909657|ref|YP_287244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71849278|gb|AAZ48774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 739 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 137/572 (23%), Positives = 254/572 (44%), Gaps = 16/572 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + D ++A S + D+ + + + G ++ G L Sbjct: 159 RRRMEHDLRIAAIAFE-SQAAIMVTDVNQRILRVNQAFTKLTGYSAEEAIGQTPGMLKS- 216 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D D + + S + G Q E R + + + I + + G + Y+ Sbjct: 217 GRQDADFYAAMWCSL--GQCGHWQGEIWNRRKNGEIFPEWLTISGVRDGRGKVTHYVSTF 274 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+ K + I AF D LT +PNR+ L+RL + +++IDID + Sbjct: 275 SDISNLKVAESEIHHLAFYDPLTAMPNRRLLLNRLDQACVSAKRSGQF-GALLIIDIDHF 333 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IA 631 K +ND LG VGD +LV + RR+ ++ D AR G+ F ++L + + Sbjct: 334 KTLNDTLGHDVGDHLLVEVARRLSACIREGDTAARQGGDEFVVMLEELGSEQEGAAVQAE 393 Query: 632 DFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A +R +A P L E +ASIG + + + T +LK A++A+Y AK G N Sbjct: 394 IVAEKIRLELARPYLLNGDTEYFRSASIGISLFFGQEKTIDILLKQADIALYKAKDAGRN 453 Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + F + +R ++ L A+ E L P + ++G EAL++W P Sbjct: 454 AIRFFDTAMQTTLDERAELEAGLRRALVRDEFVLYVQPQVD-AVRRLIGAEALLRWQPPG 512 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 ++ ++F+ +AEE +I I +++L++ ++ W D +F+ +N++++ Sbjct: 513 RAMVAPNDFIPLAEETGLIVPIGIWVLDQACAELRRWADDPRSASLFLSVNVSARQFRQA 572 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + +++ +P +KL +ES+++ N E + LR IG+ +LDDFGT + Sbjct: 573 DFVAQVADALARHGANPRLLKLELTESLLLDNVEEVIEKMQALRTIGVRFSLDDFGTGYA 632 Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL PF+ +K + S + AI+R+II M + +++A+ + ++ Sbjct: 633 SLSYLKRFPFEQLKVDRSFIRDININPDDAAIVRAIIAMGNTLRLSVVAEGVEDDLQHAY 692 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 L + C Q P+ F+ L P Sbjct: 693 LVKHECSLFQGYLFGRPMSFDDFRASLGSEPP 724 Score = 61.5 bits (148), Expect = 7e-07, Method: Composition-based stats. Identities = 38/318 (11%), Positives = 84/318 (26%), Gaps = 70/318 (22%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 +G + + +LG + G L H+ D + L Sbjct: 34 IFEHAGRAIILTNPDGLISYFNRAAQQMLGYTPEEVVGRETPLL--FHLADEISACARLY 91 Query: 470 SFVGYRRG---------------RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 S R + ++ D + + + + ++ G + Y+G Sbjct: 92 SCEPDGTPPAGFGVFISRLKLKIRDEADWTYVRKDGSHLPVSLAVSVLRDAKGGVQGYLG 151 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA+DI+E++ R+ L ++A + +MV D++ Sbjct: 152 IASDISERR--------------------------RMEHDLRIAAIAFESQAAIMVTDVN 185 Query: 575 -KYKKINDVL---------------------GIAVGDDVLVSLTRRIGELLKFPDILARL 612 + ++N G D +I R Sbjct: 186 QRILRVNQAFTKLTGYSAEEAIGQTPGMLKSGRQDADFYAAMWCSLGQCGHWQGEIWNRR 245 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 I + D + ++ ++ ++ + A + + Sbjct: 246 KNGE---IFPEWLTISGVRDGRGKVTHYVSTFSDISNLKVAESEIHHLAFYDPLTAMPNR 302 Query: 673 --MLKNAELAMYHAKHRG 688 +L + A AK G Sbjct: 303 RLLLNRLDQACVSAKRSG 320 >gi|77458934|ref|YP_348440.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1] gi|77382937|gb|ABA74450.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1] Length = 873 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 147/613 (23%), Positives = 279/613 (45%), Gaps = 20/613 (3%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV-LATGYFSQGIFSDGER 406 + +G + + L + AL + F +Q A ++ + + ER Sbjct: 259 LLPTLGPALLVLMALTVWFFRHALRSS---RYVDDSFEAMQASNQALLASNRALEASEER 315 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + D +W+ D + + + G G L D + Sbjct: 316 FRAVAEAASDWIWEVDEALSITYLSTRFSAVTGYPQAQWIGKHIGHLLVCDTTPLDLWLK 375 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 LD L+ +R + Q + RP+ S ++ Y G A+DIT++ + Sbjct: 376 KLDE--ESNASDLRCTYR--DREGQQRHCRLSARPIVEST-AVVGYRGTASDITDEVAAH 430 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 I + D LTG+PNR L L L +V++ID+D +K IND LG Sbjct: 431 AQIQHLSLHDALTGLPNRNKLSRYLDDALLLKEHAP--PLSVLMIDLDNFKPINDSLGHP 488 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL + R+ E + DI+ARL G+ F ++L + +I F + S+ PI Sbjct: 489 AGDAVLQEVAGRLRECTRDHDIVARLGGDEFVVVLCGMDTHQEIDRFCTRLIGSLHQPIL 548 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDR 704 ++ + + AS+G A +SE+++ A++A+Y AK G N F +S R Sbjct: 549 FEQQPLHIGASVGIALSRRHGYVASELIRCADIALYQAKSEGKNTWCYFEAHMSDQIQTR 608 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +++DL A+ N+E L + P ++ +EIV +EAL++W HP G + F+ +AE+ Sbjct: 609 RQMEDDLRRALTNNEFVLHFQPRYKVDGKEIVSVEALVRWQHPVKGLLGPDLFIPLAEQT 668 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + ++L ++W I + +N++ +++ E ++ ++ T + Sbjct: 669 DLIVPLGRWVLREACETALTWPA-----DILLSVNLSPAQFAISDVVEDVREVLVGTRFP 723 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 SR++L +E+V++ + + + + L+++G+ L +DDFGT S L YL PFD +K + Sbjct: 724 ASRLELEITENVMLNDTDGALTTMTALKELGVRLNMDDFGTGYSSLGYLRAYPFDGIKID 783 Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + + A++++II + K + T+ A+ + E + L + C+ +Q +++ Sbjct: 784 KRFIASISTGANDRAVVQAIIGLGKAMGLTVTAEGVETEEQLDILGKDQCNEVQGYYMSR 843 Query: 943 PLGFNSILKLLKE 955 P+ + LL+ Sbjct: 844 PIDRAAFASLLQA 856 >gi|292492175|ref|YP_003527614.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291580770|gb|ADE15227.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 845 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 127/569 (22%), Positives = 261/569 (45%), Gaps = 9/569 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R S+ + S D V D + G+ + G Sbjct: 276 RVEQRQQRLSVILEASTDFVGFSDNEGIAQYVNQAGCRLAGMTAEEAVGQPITVFT---P 332 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + R+G + E + + + + I S G++ + +A D Sbjct: 333 DWANIIIQNEGLPAAKRQGWWRGETALLHREGREIPVSQLILAHRTSEGEVEFFSTVARD 392 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+E K + A D+LTG+PNR DRL + + V+ +D+D++K Sbjct: 393 ISEHKAYESQLEYQANYDSLTGLPNRNLLQDRLEHAIAHARRIRQG-VAVLFLDLDRFKM 451 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG VGD +L ++ R+ ++ D ++RL G+ F ++L A + Sbjct: 452 VNDSLGHDVGDALLKAVAERLRGCVRDEDTVSRLGGDEFVLVLEELRGGEMSRLIANKIL 511 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++ P L + + AS+G + ++ + +LK+A+ A++ AK +G + S+ Sbjct: 512 AALQAPFALEGQTFRINASVGISLFSRDGKDALTLLKSADTALHWAKAQGRGCIRSYTSE 571 Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +R+ +++ L A+E E L Y PI+ L +V +EAL++W HP+ G + ++ Sbjct: 572 MNAQVVERLTMEQSLRQALEREEFVLQYQPIMDLQTGSMVAVEALLRWQHPQLGVVPPAK 631 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEEL ++ + ++L W+D P + + +N++++ + +L + + Sbjct: 632 FIPLAEELGIMPTVGEWVLRTACLQARRWQDAGL-PMLTMSVNLSTQQFIQVDLTDRVAH 690 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T PS + + +ES +M + E + L +++ + L++DDFGT S L +L Sbjct: 691 ILDETGLPPSCLAIEITESQIMQDVESAIASLRAFKEMKVHLSIDDFGTGYSSLIHLKRF 750 Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P + +K + T + I+ ++I +A ++ ++A+ + E ++ L GC+ Sbjct: 751 PLNRLKIGKDFIHDFTKTPEDETIVLAVISLAHSLGLKVVAEGVETEEQLRFLWENGCEE 810 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKNT 963 +Q + + PL + + LL+E L + Sbjct: 811 MQGHYFSRPLPASEMEVLLQENRQLPLRS 839 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 95/287 (33%), Gaps = 11/287 (3%) Query: 253 WRACSEIALSSSLIIFLFMYL----HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308 + + ++ +F YL R G+ T + + + A Sbjct: 4 FIDLGSEIFRTGFLLAIFGYLLWVGRTRRSLPPRGWNTLLSGFGLLVFGSLLDITDEFEA 63 Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368 + + + + GY +L + W+ + R + Sbjct: 64 LNPFFIVGNTHIQALLEKVVIFPLGYLLLLLGLMRWMPAVHGL---SREVESRKQVERAL 120 Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 A V + + + V + + R + S +++ + + V Sbjct: 121 EATVETRTGELKAANLALAEEVAVRRQAQEFLEITRARLEHLLTASPAVIYCCKVGGNYV 180 Query: 429 --TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + ++ ++G W+ ++H D++ L + + RG+ YE+R R Sbjct: 181 NTFVSENVQALVGYKPKDFIEDSCFWINHVHPRDQERVAADLGALLQ--RGKACYEYRFR 238 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 D + W+ ++ + +++G L +G DIT++K+ + + Sbjct: 239 HQDGSYLWIHDELQLVRDADGQPLEIVGYWVDITDRKRVEQRQQRLS 285 >gi|46579825|ref|YP_010633.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449240|gb|AAS95892.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234168|gb|ADP87022.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris RCH1] Length = 997 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 148/566 (26%), Positives = 272/566 (48%), Gaps = 8/566 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 Q + +R + + ++ + P +A + G + + + Sbjct: 417 ERRSVEQALRRAEQRYRGIFENAVEGIFQIAPDGMLLRGNPAMAEMFGYSDIESLREVGS 476 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + +EFR R +++ W+ + R +++++ L Sbjct: 477 MAEAMFAE--ATSSDVFFHQLEMTGNVSGFEFRARHREDRELWLRVNARRVADAHDATLF 534 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y G DIT +S + + A+ D LTG+PNR FLD L + +A + TV+ + Sbjct: 535 YEGFLTDITISHRSRQQLAHQAYHDPLTGLPNRLLFLDHLQLAMQRAARRTDAMFTVLYL 594 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG +GD +L + + ++ D +AR G+ F I+L N Sbjct: 595 DLDRFKIINDSLGHGIGDALLREVACTLRRCVRDVDTVARFGGDEFAILLEDTGNCAGAV 654 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A +R+S+A P+N+ E+ TASIG T +T ++L++A+ AMY AK G + Sbjct: 655 RIARRIRESLAQPVNIAGHEVFTTASIGIVLQTRDYLTPEDILRDADTAMYRAKEMGKSR 714 Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F + ++ DL AVE EL L YHPI+ L D + G E+L++W Sbjct: 715 FKVFNARMREDTLRLMALETDLRFAVERGELSLRYHPIVDLEDGSLHGFESLLRWRRGN- 773 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 ++S +EF+ +AE+ +I I F++E + R + +W+D A I + +NI+ + L+ Sbjct: 774 EDVSPAEFIPVAEDAGLIADIGAFVIEDVCRQVAAWQDTACDCGI-VHVNISGRQLMRPG 832 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + ++ + + S ++ +ESV++ + + ++ +LR++GI L LDDFGT S Sbjct: 833 FAQMVDEILRRHGIAGSCLRFEVTESVLVRHGTLAVSVMHQLRELGIRLCLDDFGTGYSS 892 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P +++K + S + G E A++R I+ + ++ ++A+ + E L Sbjct: 893 LGYLRRLPVESLKIDRSFVWGMEKDEAGRALVRGILTLGLHLGLEVVAEGVETEEQAVLL 952 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGC Y Q A PL + + Sbjct: 953 RDMGCRYGQGFLYAKPLLSERVPPFV 978 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 27/204 (13%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL-------GSGDIVWDWDIVRDRVTT 430 + ++GF G + A+ G G+ + + + Sbjct: 227 LARVMGFMAADLARFVGGLEAEVKRSTGELRTALGELSAIVGGMGEGLLVVSAEGLVLRS 286 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRA 487 A++ L + LP +D R L S R E+ Sbjct: 287 NEAFASLFCLEPFGCPVALDALLPLSGQDDSGLRGVLEDALQSMARGEAARHSGEYPFIC 346 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D W+ I P++ G + + D+T + ++ A +D Sbjct: 347 GDGVRRWVGCTIEPVT-IGGKPC-IVCLVQDVTARNEAQ-----QALRDA---------- 389 Query: 548 LDRLTTILDLSATDDNLRPTVMVI 571 D+L + D +++ Sbjct: 390 YDKLEAEVASRTRDLRRANAQLLL 413 >gi|113968775|ref|YP_732568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113883459|gb|ABI37511.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 1494 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 136/571 (23%), Positives = 269/571 (47%), Gaps = 12/571 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + + A + + V D+ + I+G ++ G + Sbjct: 931 LQRQLEDEINLLAQAFENTSEGVLILDVDENIRVANHAAQQIIGSEQHNLVGQSFSQFVQ 990 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +D + + + E + + + + + M +++ L Y+ + Sbjct: 991 M----KDGLSAEVHQLL-GQDSSWTGERELVGQNGVICPVWLNVSVMQSASDSSLHYVIV 1045 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DITE+K++ + A D LTG+PNR F RL + ++ + ++ +D+D+ Sbjct: 1046 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQMAQQSGE-KLALLFLDLDR 1104 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G ++GD +LV + R+ + +L R G+ F I+L + NN +I A Sbjct: 1105 FKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLRNANNLNEINHIAE 1164 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + I P L RE ++ SIG + W + +KNA+LAMYHAK G + + + Sbjct: 1165 RLLAQIVAPFKLFGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFKYY 1224 Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752 ++ + ++ DL A+E E L Y P I + ++ +G+EALI+W HPK G I Sbjct: 1225 SSERNAQALYHLRLEADLRKAIEREEFELYYQPQIDILRGDKFIGMEALIRWRHPKEGYI 1284 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AE ++ I+ ++ R D W + + +NI++ + + Sbjct: 1285 RPDIFIKVAEACGLVVEIDRWVFRRACLDGAKWVKRCA-TQFKLSVNISAVHFRQPDFID 1343 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 G++ +++ T S + L +E V+M + ++ L +L+++GI + +DDFGT S L+Y Sbjct: 1344 GIKKILADTQMPASSLGLEITEGVLMKEVQAAKSHLTQLKELGIEVAIDDFGTGYSSLAY 1403 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L + +T+K + S + AI+ SII +A+N++ T++A+ + ++++ Sbjct: 1404 LRHFDVNTLKIDRSFLIDIATNSADQAIVSSIIELARNLKLTVVAEGVETVEQLEQVFSR 1463 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 GC +Q + A P+ + L ++ L Sbjct: 1464 GCYIVQGYYFAKPMSVTDFERYLLQKCTLSS 1494 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 5/165 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+ +I + + + + V +Q + +R ++ GS +W+W Sbjct: 782 LLLVFSIIALSLAWYRQRQVRTFMAMNQALTESDDRLRQSLRGSDSDLWEWHRDTQSFYL 841 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 ++LG + + + +H DR +S + R + E+R + Sbjct: 842 DNR-GSVLGSHANEIVATLETLP--VHPEDRGKALAQWNSMLAGEIDRFEAEYRYQRRSG 898 Query: 491 QFHWMIIRIRPM-SNSNGDIL-RYIGIANDITEQKKSLEGILCNA 533 + W+ +R RP+ N ++ R GI +DIT Q++ + I A Sbjct: 899 NWGWLRVRGRPVARNKQTQVIERVAGIYSDITLQRQLEDEINLLA 943 >gi|144901003|emb|CAM77867.1| Sensory box/GGDEF family protein [Magnetospirillum gryphiswaldense MSR-1] Length = 840 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 146/604 (24%), Positives = 274/604 (45%), Gaps = 9/604 (1%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + + + L + + + + + E S + D+V Sbjct: 236 IGASFPLELSLNAMELGGQRLFVAIAHDITERKAAEEELRKQKEWLSTLINAMPDLVCFK 295 Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRL 479 D + I GL HG L ++ + ++ D + + Sbjct: 296 DGKGKWLVANKFYLDIAGLDHVDYHGRTSADLAHMSRGFGEFMLTGSLSDERAWQEKKPV 355 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 YE + D + P+ +G + + D+TE+K + I A D+LT Sbjct: 356 AYEKELPTPDGGAKVFDVIKIPLYEEDGARRGLVMVGRDVTERKLAAARIHHLAHHDSLT 415 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR F +RL T L + + + +M +D+DK+K IND LG +GD +L ++ +R+ Sbjct: 416 GLPNRVLFQERLRTALAQAKRLGH-KVALMFLDLDKFKDINDTLGHHLGDLLLKAVAKRL 474 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 ++ D +ARL G+ F ++L + ++ ++ A ++ SI+ P L E E+ + SIG Sbjct: 475 LRCVRETDTVARLGGDEFAVVLTNLDDPEGASNVAESIIASISEPFGLDEHEVNTSTSIG 534 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717 + + S +LKNA+LAM+ +K G N+ + + ++ DL +A+ Sbjct: 535 ITIFPDDAVDSEVLLKNADLAMFRSKAEGRNNYHFYVAEMDAEIQARKVVEHDLRVALGT 594 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 +L + Y P+I + E+VG EALI+W HP G +S EF+ IAE +I + ++L R Sbjct: 595 DQLEMHYQPLIEMKTGEVVGCEALIRWKHPTRGWVSPVEFIPIAERTDLIVPLGRWILHR 654 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESV 836 W PP I +N++ ++ L + ++ +T + P +++L +E + Sbjct: 655 SCLQGRDWARAGL-PPQKIAVNLSPVQFKNHTALLAMIADILDQTGFPPDQLQLEITEGI 713 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 M N E + +L +LR +G+ +++DDFGT S L+YL P D +K + S + Sbjct: 714 AMQNVEATVDVLRQLRDMGVLISIDDFGTGYSSLNYLKRFPVDKLKIDRSFVVDIGLHPD 773 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A++ +I+ + ++ T + + + + L G D Q + A L + + ++ Sbjct: 774 NAAVVNAIVTLGHSLGTRVNVEGVETIEQLDFLKAHGVDEAQGFYFAKALPPDEFARFVR 833 Query: 955 ERFP 958 E+ P Sbjct: 834 EKSP 837 Score = 51.1 bits (121), Expect = 9e-04, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 45/163 (27%), Gaps = 17/163 (10%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDG-ERQSL-------AVLGSGDIVWDWDIVRDRVT 429 ++ + T + H A E L V + D + + T Sbjct: 124 LIQVFDVTTMSHREALLRQQARTMQALAENYRLSELHNRAIVDNTADAIVTFGEDGAIGT 183 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 P I G + G L R ++ E R Sbjct: 184 YNPAAIRIFGYDPYEIVGKSVGLL-------IPGVLGKSGQLETERFLDIRAEVVGRRKI 236 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + + M G ++ IA+DITE+K + E + Sbjct: 237 GASFPLELSLNAM--ELGGQRLFVAIAHDITERKAAEEELRKQ 277 >gi|157373575|ref|YP_001472175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] gi|157315949|gb|ABV35047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] Length = 1485 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 135/563 (23%), Positives = 256/563 (45%), Gaps = 12/563 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + D + + A + + V D + TI+G + + + L Sbjct: 924 AQRQLEDDVKLLAQAFGNTSEGVLILDASERIKVSNKAAQTIIGSDARVLTHKYFSDLMV 983 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 D +LD E + + + + M GDI Y+ + Sbjct: 984 AKEGRSDEIAHLLDQ-----GVSWTGEREFVCTNGSSCPVWLNVSTMLGGKGDITHYVAV 1038 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DITE+K++ + A D LTG+PNR F RL + + + ++ +D+D+ Sbjct: 1039 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSTRLAQSIHRA-EHSGEKLALIFLDLDR 1097 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G ++GD +LV R+ + L R G+ F +++ +N KI Sbjct: 1098 FKHVNDSYGHSMGDALLVEAASRLQSCISEEHTLCRFGGDEFVLLIRDADNIDKINHVCT 1157 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + I P L RE ++ SIG + W ++KNA+ AMYHAK G + + F Sbjct: 1158 ELLVQIEAPFELFGREFFISTSIGVSLWPDDTRQPEVLIKNADQAMYHAKEEGRGNFQYF 1217 Query: 696 RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752 + ++ +L A+E E L Y P + + ++++G+EAL++W H K G + Sbjct: 1218 SSERNAEALYHLRLEGELRKAIERDEFELHYQPQVDILRGDKLIGMEALLRWRHHKDGLV 1277 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 + F+ +AE +I I+ ++L + W + + +NI++ + + Sbjct: 1278 RTDVFIKVAESCGLIIDIDRWVLRQACVQGALWANSY-KENFKLSVNISAVHFRQPDFID 1336 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 G+++++ +T PS + +E V+M ++ L LR++GI + +DDFGT S L+Y Sbjct: 1337 GVRSILEETKIPPSALGFEITEGVLMKELHIAKDHLRDLRELGIDVAIDDFGTGYSSLAY 1396 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L + DT+K + S + E AI SII +A+N++ ++A+ + + ++++ Sbjct: 1397 LRHFDVDTLKIDRSFLIDIATNETDQAIASSIIELARNLKLNVVAEGVETKDQLEQVFSR 1456 Query: 931 GCDYIQDSHVASPLGFNSILKLL 953 GC IQ + + PL + + + Sbjct: 1457 GCYVIQGYYFSKPLTVSDMESYM 1479 Score = 90.4 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 11/178 (6%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF----SQGIFSDGERQSLAVLGSGDIV 418 G ++ V+ IG VI + + + +R ++ GS + Sbjct: 763 QFWWQTQWFNGLILFTVLCIGIGVIVYRQRQVKAFKLVNSALVESEDRLRQSLKGSDSEL 822 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRG 477 W+W + A + + +H +++D ++ + Sbjct: 823 WEWRHDTQMFSLENRGAK----RKEDRKNKLLKLKDFPVHRDEKDKVLASWNNMIEGYSD 878 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMS--NSNGDILRYIGIANDITEQKKSLEGILCNA 533 R E+R R D + W +R RP+ ++G ILR GI +DIT Q++ + + A Sbjct: 879 RFDVEYRYRREDKTWGWTRVRGRPVELDPASGKILRVAGIYSDITAQRQLEDDVKLLA 936 >gi|313679060|ref|YP_004056799.1| diguanylate cyclase/phosphodiesterase with pas/pac and gaf sensor(s) [Oceanithermus profundus DSM 14977] gi|313151775|gb|ADR35626.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Oceanithermus profundus DSM 14977] Length = 1034 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 152/566 (26%), Positives = 271/566 (47%), Gaps = 12/566 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 ++ V Q + ER + + DI D +P + +LG + Sbjct: 472 MRDVTEARRLEQALARSEERFRTILQNTSDITAVLDEEMRIRYISPAVEAVLGHKVRDLV 531 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G IH +DR L + + + FR+R+A + W+ +R R + +N Sbjct: 532 G--LTVGESIHPDDRPAAERSLRAALEDPSRPIHVTFRIRSASGETRWLEVRGRNLL-AN 588 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + + A DITE K I A+ D LTG+ NR+ +R+ + Sbjct: 589 PAVRGILVSARDITEHKVYEAQIEHMAYYDALTGLANRRMLRERVEEAIRELG--GGGGF 646 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 + ID+D++K +ND LG +GD +LV + RR+ E D+LARL G+ FG +L ++ Sbjct: 647 AFVYIDLDRFKNVNDTLGHDIGDALLVQVARRLEEQTGPGDVLARLGGDEFG-LLARRDD 705 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + A + +++ P N+ I V+ S G A + + T ++L++A++AMY AK Sbjct: 706 QEGVLELAQRLIQALRPPFNVEGHHIHVSGSAGIALYPTDGETFEQLLRHADIAMYRAKD 765 Query: 687 RGGN-HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 + S ++ + +R ++ DL A+++ L L Y PI + E+ GLEAL++W+ Sbjct: 766 DKVHLQFYSPHLNVYTHERFQLETDLRTAMQSGSLILYYQPIQNVQ-GEMRGLEALVRWE 824 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G I EF+ + EE + + +L + R I WR PP+++ +N+ L Sbjct: 825 HPTRGQIFPEEFLPLIEEAGLATGFDRQILTQAVRQIARWR--GAEPPVWVSVNVGYASL 882 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 LD ++ L + P R+ + +E+ +PE+++ +LG L+++G+ L LDDFG Sbjct: 883 LDPGFLGFLEQLFKEEQVEPERLLIEVTETQASRDPEQTKRVLGHLKELGVQLALDDFGQ 942 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL P D +K + + ++G K I+R I+ +A + ++A+ + E Sbjct: 943 GYSSLSYLSDFPIDLIKIDRAFISGVPFRTKDAGIVRMIVALASQLGIDVLAEGVETETQ 1002 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSI 949 + L +G Y+Q ++ L + Sbjct: 1003 REWLQHVGVHYLQGYAISEALPPAEL 1028 Score = 54.6 bits (130), Expect = 1e-04, Method: Composition-based stats. Identities = 20/195 (10%), Positives = 54/195 (27%), Gaps = 17/195 (8%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPA---------LVGGLVLIVILIGFTVIQHVLATG 394 +++ +G + + + A G ++ V+ + + Sbjct: 295 RLMLEASGVGSILLLPLLIGGAFWGFAGFELTETNRRFGHEMIRVLRTAAASLAAGIERV 354 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 ++ + +GD + D + I GL++ + L Sbjct: 355 ERTRELSVQRSLLERINEAAGDGILAVDAQWRPLFYNRRFLEIWGLSAEELSAEGSAGLS 414 Query: 455 YIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + + F +L + E R+ D + + G+ Sbjct: 415 VLTRRTKNPKRFAEVLLELHERPDRNVHIELRL--KDGRIL----QASSAPLDGGETGGR 468 Query: 513 IGIANDITEQKKSLE 527 + D+TE ++ + Sbjct: 469 VWFMRDVTEARRLEQ 483 Score = 48.0 bits (113), Expect = 0.008, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 14/164 (8%) Query: 342 PAWILIFIWF-IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-- 398 +WIL+F+ + + +A T R + L + + +G G Sbjct: 5 LSWILLFVSAALIVGLAGTWRKRRSALLTGLGLAFTALGLALGGGAGWAATGLGLALIVW 64 Query: 399 GIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + R S A+ S D R R+ + ++ +LG + +HG + I+ Sbjct: 65 AVVAPRPRASSRALELSVD-------ERGRLVRSRNLEALLGWVTEEVHGEP--FAGLIY 115 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 DR + + + + E R A + W+ + + P Sbjct: 116 PEDRPLWEKVQEQVLETGEAT-TLELRAVHAAGRLVWLRVFVEP 158 >gi|28896866|ref|NP_796471.1| hypothetical protein VP0092 [Vibrio parahaemolyticus RIMD 2210633] gi|260364666|ref|ZP_05777261.1| PAS domain protein [Vibrio parahaemolyticus K5030] gi|260877767|ref|ZP_05890122.1| signal transduction protein [Vibrio parahaemolyticus AN-5034] gi|260895583|ref|ZP_05904079.1| signal transduction protein [Vibrio parahaemolyticus Peru-466] gi|28805074|dbj|BAC58355.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088549|gb|EFO38244.1| signal transduction protein [Vibrio parahaemolyticus Peru-466] gi|308090043|gb|EFO39738.1| signal transduction protein [Vibrio parahaemolyticus AN-5034] gi|308112621|gb|EFO50161.1| PAS domain protein [Vibrio parahaemolyticus K5030] Length = 811 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 141/552 (25%), Positives = 260/552 (47%), Gaps = 17/552 (3%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + + I G ++ + G N L H +D Sbjct: 267 QLSLASKIFNNSQEGMVITDSNANIIDVNNAFSQITGFSAEEVIGKNPNILRSGHHDD-- 324 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F L + + G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 325 AFYQQLWQQLETK-GQWKGEFINRKRDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR + L +++ + +DID +K IND Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQ-----PFATLFLDIDHFKHINDS 438 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F I+L + + + ++ Sbjct: 439 MGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGDSPLLETLSSILGVFR 498 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P +L + + ++ SIG A + + S +LKNA+ AMY AK G N + Sbjct: 499 RPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 558 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V I+ L A+E +L+LVY P L I+G+EAL++W+HP++G + ++F+ Sbjct: 559 KSVSHVRIQSALHEAIEKEQLHLVYQPQYNLAQNAIIGVEALVRWEHPEFGLVPPADFIP 618 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I+ I ++L+ W + I +N+++ L + ++ ++ Sbjct: 619 IAEKTGLIQNIGEWVLKDACLQGTDWLARGVQFG-KIAVNVSALQLQQSRFINKLKTILR 677 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + R++L +ES ++ +P+ + L +L ++GI ++LDDFGT S LSYL +P + Sbjct: 678 ETGFPAHRLELEITESFLLIDPKLAIASLNQLCELGIEISLDDFGTGYSSLSYLKGLPIN 737 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ + AI+ +II M + ++A+ I + L GC Y Q Sbjct: 738 KLKIDRSFVSDVPNDNDSNAIVNAIIAMGTTLSLKVVAEGIETPEQVAYLVDKGCIYGQG 797 Query: 938 SHVASPLGFNSI 949 + P+ + Sbjct: 798 YLFSPPVAAEKL 809 Score = 45.3 bits (106), Expect = 0.051, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%) Query: 421 WDIVRDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W D + + ++ + G + F V Sbjct: 160 WIKTTDGLYAMTNRSVEQAWKKSNDDIVGKND--FDLFSAERAEKFIDADRLVVATGTQN 217 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + E R +N W+ P+ N GD++ +G+ +IT ++K +E L A Sbjct: 218 IVEECRQIDENNNPTWLETIKSPVRNQAGDLIGILGMTRNIT-RRKMVETQLSLA 271 >gi|229099734|ref|ZP_04230660.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] gi|228683704|gb|EEL37656.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] Length = 909 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 183/854 (21%), Positives = 340/854 (39%), Gaps = 30/854 (3%) Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175 F L + S R+ D F ++P + L L Sbjct: 66 RLFWIILSVGALSYFIGDIVVSYQRLILKDYYTF---VDPSDFFYLL------FLISFAL 116 Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGYIS 233 + I + A F +Y++ ++ + T + +V L Y Sbjct: 117 AFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIEQTIHVFTTSYIDIFVQLTYPM 176 Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFSGI 290 D FL +NL L + L S+LI++ Y + + T + Sbjct: 177 ADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDAIYAYIKYFTPAYSMFTVTPF 236 Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF-I 349 + ++ + + + + ++ I A + I Sbjct: 237 YQVVLVLAAIACILHTKEPEKQEQVLLTPKFGESIRLLLPYISVVMLIIFILAEYVFAPI 296 Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSDGE 405 IGL + T L + L+L + Q L T + ++ + + Sbjct: 297 VVIGLIITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTEDLVEQKNELYHNQQ 356 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 D ++ D+ + + T+LG + + + I+ D + Sbjct: 357 MFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEII 414 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + E R + +++ + P+ + I + DITE K+ Sbjct: 415 NAFHRVKKGN--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESKQQ 471 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I A+ D LT + NR++F L + + VM +D+D++K IND LG Sbjct: 472 QEQINFLAYHDTLTELANRRAFHQYLEKAIARAKIS-KSSFAVMFLDLDRFKVINDTLGH 530 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L+++ +R+ L LARL+G+ F I++ + + A + ++ P Sbjct: 531 RVGDLLLIAVAKRLERLSTQHMKLARLAGDEFTILIENYKKRTDVKKIADMIVVAMNKPF 590 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 + + + ++ SIG A + + +L++A++AMY AK++G N + ++ Sbjct: 591 EIENQHLRISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKKIER 650 Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 I++DL LA+ N E YLVY P I +I+G EALI+W HP G+IS EF+ I EE Sbjct: 651 KARIEKDLPLALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVEE 710 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 + + ++L+ + W + I +N+++K+ N+L E + +++ Sbjct: 711 TPQVVPLGHWVLKEACLQLKIWH-TFGYQNLKISVNLSAKEFQQNQLIENISQILNDVQV 769 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P + L +E + M N + + L +L++ GI +DDFGT S L+YL P DT+K Sbjct: 770 DPKHVTLELTERIAMINEKETLSRLKQLKEYGIRTAIDDFGTGYSSLAYLSIFPIDTLKV 829 Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + AI +I+ +A + ++IA+ I E +K L + C Y+Q + + Sbjct: 830 PREFTQLADHRPEERAIFSTILSLANTLNLSVIAEGIETEKQLKFLQKNNCKYMQGYYFS 889 Query: 942 SPLGFNSILKLLKE 955 PL +K L++ Sbjct: 890 KPLTSKQFIKFLQK 903 >gi|71908953|ref|YP_286540.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71848574|gb|AAZ48070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 655 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 154/639 (24%), Positives = 290/639 (45%), Gaps = 23/639 (3%) Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ-----------PALVGGLVLIVILIG 383 + VL +++ IGL + I R I P L+++ +L+ Sbjct: 17 RKFVLFAMGAVVLVWCLIGLDLWIASRHAAAKISFLPGETTPSELPTWKLFLLVLSVLLT 76 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V+Q + + + Q L V + + + D + ++ I G A Sbjct: 77 ALVVQAYRQLLATKRQVEAGLALQRLIVDHASEAMMLTDSAQRILSVNSAFEQITGYAGK 136 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G L H + R + D G + E R D + +RI + Sbjct: 137 DVFGKTPTMLSAGH-QGLASHRNVWDFVAEN--GSWEGEIWDRRKDGTIYPKQMRITAIC 193 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + ++ + +DI+E + E + A D LT +PNR + L T+L+ + T Sbjct: 194 EDGVQLSHFVAVFSDISESRAQAERLEYLARHDPLTNLPNRLALDAHLDTLLEGA-TPGI 252 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R +++ID+D +K IND LG GD +L L RR+G + L RL G+ F +++ Sbjct: 253 NRLALLIIDLDNFKTINDSLGHHAGDRLLSELARRLGAQMDLTKRLFRLGGDEFVVVVDQ 312 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 N + + + I P N+ + T+SIG + + + +++NA+ AMY+ Sbjct: 313 LINEEAVIELVQQLAGGIGDPCNIDGHVLHCTSSIGISLYPEDGRDAQALIRNADTAMYY 372 Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + F +++ + R+ ++ +L A+ ++L L Y P I L+ ++VG+EAL Sbjct: 373 AKANGRNNHKFFTEPMNAAANKRLHLESELWCALAENQLVLYYQPQIDLLSGKVVGVEAL 432 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP G I +EF+ +AEE +I + ++L R W D + +NI+ Sbjct: 433 VRWRHPLRGLIPPAEFIPVAEECGLILPLGHWVLLTACRQAREWLDAGIDMG-EMAVNIS 491 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + E +QA++++T R++L +ES +M + + L +LR +GI L +D Sbjct: 492 AHQFRQPEFISSVQAILAETGLPTGRLELEITESTIMHEVDAAIQTLAQLRAMGIKLAID 551 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P D +K + S + + +++ SI+ + +++ ++A+ + Sbjct: 552 DFGTGYSSLAYLRRFPLDRLKIDRSFLADVETDPDAASLVTSIVLLGRSLGLQLVAEGVE 611 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL---KLLKE 955 + L + C+ +Q H P+ ++ + L+ Sbjct: 612 NFAQAEFLRTLECERVQGFHFYQPVCAEEVVGVGRFLEN 650 >gi|229076515|ref|ZP_04209476.1| Sensory box/GGDEF [Bacillus cereus Rock4-18] gi|228706607|gb|EEL58819.1| Sensory box/GGDEF [Bacillus cereus Rock4-18] Length = 909 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 183/854 (21%), Positives = 341/854 (39%), Gaps = 30/854 (3%) Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175 F L + S R+ D F ++P + L L Sbjct: 66 RLFWIILSVGALSYFIGDIVVSYQRLILKDYYTF---VDPSDFFYLL------FLISFAL 116 Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGYIS 233 + I + A F +Y++ ++ + T + +V L Y Sbjct: 117 AFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIEQTIHVFTTSYIDIFVQLTYPM 176 Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFSGI 290 D FL +NL L + L S+LI++ Y + + T + Sbjct: 177 ADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDAIYAYIKYFTPAYSMFTVTPF 236 Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF-I 349 + ++ + + + + ++ I A + I Sbjct: 237 YQVVLVLAAIACILHTKEPEKQEQVLLTPKFGESIRLLLPYISVVMLIIFILAEYVFAPI 296 Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSDGE 405 IGL + T L + L+L + Q L T + ++ + + Sbjct: 297 VVIGLIITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTEDLVEQKNELYHNQQ 356 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 D ++ D+ + + T+LG + + + I+ D + Sbjct: 357 MFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEII 414 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + E R + +++ + P+ + I + DITE K+ Sbjct: 415 NVFHRVKKGN--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESKQQ 471 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I A+ D LT + NR++F L + + VM +D+D++K IND LG Sbjct: 472 QEQINFLAYHDTLTELANRRAFHQYLEKAIARAKIS-KSSFAVMFVDLDRFKVINDTLGH 530 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L+++ +R+ L LARL+G+ F I++ + + A + ++ P Sbjct: 531 RVGDLLLIAVAKRLERLSTQHMKLARLAGDEFTILIENYKKRTDVKKIADMIVVAMNKPF 590 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 + + + ++ SIG A + + +L++A++AMY AK++G N + ++ Sbjct: 591 EIENQHLRISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKKIER 650 Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 I++DL LA+ N E YLVY P I +I+G EALI+W HP G+IS EF+ I EE Sbjct: 651 KARIEKDLPLALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVEE 710 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 + + ++L+ + W + I +N+++K+ N+L E + +++ Sbjct: 711 TPQVVPLGHWVLKEACLQLKIWH-TFGYQNLKISVNLSAKEFQQNQLIENISQILNDVQV 769 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P + L +E + M N + + L +L++ GI +DDFGT S L+YL P DT+K Sbjct: 770 DPKHVTLELTERIAMINEKETLSRLKQLKEYGIRTAIDDFGTGYSSLAYLSIFPIDTLKV 829 Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + AI +I+ +A + ++IA+ I E +K L + C Y+Q + + Sbjct: 830 PREFTQLADHRPEERAIFSTILSLANTLNLSVIAEGIETEKQLKFLQKNNCKYMQGYYFS 889 Query: 942 SPLGFNSILKLLKE 955 PL +K L++ Sbjct: 890 KPLTSKQFIKFLQK 903 >gi|186470454|ref|YP_001861772.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] gi|184196763|gb|ACC74726.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] Length = 1061 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 144/562 (25%), Positives = 265/562 (47%), Gaps = 10/562 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E + S + + D R +T G + + G + + Sbjct: 499 MEQRLELWAKVFEASSEAILILDQERRLLTANASFYRATGYRAEDIAGKPPAF--IVAGA 556 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + T L + V R E ++R + + I + + G + YI DI Sbjct: 557 NSGAVITALATLVD-RSSSWNGEAQIRRRQGGDYPAWLMISAVRDKRGSVSHYICTLIDI 615 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++KKS I A D LT +PNR F RL +LD + R V+ ID+D++K I Sbjct: 616 TDRKKSEARIEFLAEHDVLTELPNRALFTKRLGVVLDNAKHAQQ-RVAVLFIDLDRFKDI 674 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-FAIAMR 638 ND LG +GD +L S++RR+ + ++ D ++RL G+ F ++L ++ +A + Sbjct: 675 NDSLGHHIGDGLLRSVSRRLVQAVRSGDTVSRLGGDEFTMVLADAGSAADVARTIDERLL 734 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + + V S+G A + +++NA+ AMY AK G N V+ F Sbjct: 735 PLVREPHAIGGVTLQVACSVGVALYPDDGADIETLMQNADAAMYQAKAAGRNLVKFFSPD 794 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ + A+E EL L Y P + +V +E L++W HP+ G ++ S+ Sbjct: 795 MAERARQRLALEACMRTAIERRELRLAYQPCLDAQTGALVSVEGLLRWTHPQLGAVTPSQ 854 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE +I I +++++ R + WR+ + + IN+++ L D +L E ++ Sbjct: 855 FIPIAEETRLIIPIGAWVIDQACRQLARWRNAEMGE-LRMSINLSAIQLRDADLVETLRH 913 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + +P R++L +E+V+M + E + +R +G+ L+LDDFGT S LSYL Sbjct: 914 SLVTHGVAPQRLELEITETVLMDSAENYLDAICAIRALGVKLSLDDFGTGYSSLSYLNRF 973 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + + + +A++++II + + ++A+ + E + L +GCD Sbjct: 974 PLDRLKIDRAFVRDMLDAPADLAVIKAIIELGHELGLRVVAEGVESEDEANTLRSIGCDE 1033 Query: 935 IQDSHVASPLGFNSILKLLKER 956 +Q ++ L + ++R Sbjct: 1034 LQGFLYSAALSAEELETWAQQR 1055 >gi|120599648|ref|YP_964222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sp. W3-18-1] gi|120559741|gb|ABM25668.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. W3-18-1] Length = 1018 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 148/557 (26%), Positives = 258/557 (46%), Gaps = 10/557 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I + +L S + + D +T + I G + + G L Y IN Sbjct: 451 IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSDITGYKAKEVCGQHIRLL-YCDIN 509 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 RD + + ++ ++G+ Q E R + + + + + I + + G R + + +DI Sbjct: 510 GRDFYDKMNNAI--NQKGQWQGEMLQRRKNGEEYVIWLTINTIKDKEGMPYRRVALFSDI 567 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K++ I A D LTG+PNR+ L+ L + + + + ++ +D+D +K++ Sbjct: 568 TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKNADRNQD-HFALLFLDLDYFKEV 626 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +GD +L+ R+ ++ D++ARL G+ F ++L + + I A + + Sbjct: 627 NDTLGHEMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILR 686 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA P L E +TASIG + + +LK+A+ AMY AK +G N F S Sbjct: 687 RIAEPYLLGEETAYITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + +DL AV N E L Y PI+ L E+ EALI+W H + G++S EF Sbjct: 747 QEYAKYRMRLIQDLRQAVSNKEFELHYQPIVSLTTGEVAKAEALIRWTHAERGSVSPGEF 806 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816 + +AE+ +I I ++ E+ AR +WRD+ I I +N + D L Sbjct: 807 ISVAEDTGLIVEIGNWVFEQAARQSAAWRDELG-VDIQISVNKSPIQFRDEGALLHNWLE 865 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + + + +E +++ L R G+ ++LDDFGT S L+YL Sbjct: 866 LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + E + L GCDY Sbjct: 926 DIDYLKIDQSFTRHIDTDTNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLSAGCDY 985 Query: 935 IQDSHVASPLGFNSILK 951 Q + P+ + Sbjct: 986 GQGYLFSKPIAAIDFAQ 1002 Score = 114 bits (285), Expect = 1e-22, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 2/158 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ V A + + + E+ L + S VWDWDI DR+ A ILG Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLNSSDLGVWDWDIRNDRIERNARSADILGC 365 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ R W+ I DR +++ + + + E+R+ + Q W++ + Sbjct: 366 DIDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETPQHKMEYRLNTLNRQVRWILDTGK 425 Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536 + ++N + LR G DITE K E + +A D Sbjct: 426 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 463 Score = 68.8 bits (167), Expect = 5e-09, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 78/263 (29%), Gaps = 14/263 (5%) Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 I+ + L ++ + + + + +I + Y ++ L + Sbjct: 75 ISGLFFGGLPTLIAVALTGFYRLSIGGDAMWIGVAVIVSSGLIGVIWRQYRKSYLANISA 134 Query: 345 --ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-------IGFTVIQHVLATGY 395 +L F + + + M + + L+ L L V+ + ++ Sbjct: 135 KEMLCFAYTVHIVMLLWFFTLPLPVALPLLAKLSLPVLTVYPLATWLLSRLLSRRFELER 194 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 Q D + I + + P + +L + W Sbjct: 195 DEQIRLQDDFLFRSQFTVGNIGIAITGIDQKWMKVNPHLCQMLKYTENELLN--MTWKQL 252 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H +D + + + + + + R A D + + + +N +L I Sbjct: 253 THPDDIEADIVKFELMLAGKIDNYEMDKRFIAKDGSIVYTHMTVAC-KRANNRVLLVIAG 311 Query: 516 ANDITEQKKSLEGILCNAFQDNL 538 D+T Q +L A ++ L Sbjct: 312 YLDVTAQ--TLADREVLASREQL 332 >gi|325982844|ref|YP_004295246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] gi|325532363|gb|ADZ27084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] Length = 576 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 139/555 (25%), Positives = 256/555 (46%), Gaps = 8/555 (1%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 FSD + + ++ D + GL+ + G + Sbjct: 21 FSDVSKFQELIDLLPIAIFIKDTESKLLAINKACELQWGLSFKDLQGTDAS--QIFPPAQ 78 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 ++F E + Q + +P+ +++G L IG+ DIT Sbjct: 79 MEHFLAKDQEVFESGCQIDFEETMWNSMLKQNRMVHTFKKPICDTSGKPLYLIGMFVDIT 138 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ ++ + IL A D LTG+PNR DR+ L+ + R ++ ID+D +K IN Sbjct: 139 ERHRAEQRILEMATYDILTGLPNRALLKDRIERALEHGNRNRQ-RVALLFIDLDNFKVIN 197 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG VGD +L ++ R +++ D +AR G+ F ++L + ++ A + + Sbjct: 198 DSLGHDVGDKLLQAVAARFVSIVRGEDTVARQGGDEFIVLLSNLESAFDAEAVAQKILNA 257 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699 + + + +E+ ++ SIG + + +L+N+++AMYHAK G N+ E F+ Sbjct: 258 LQLHFLIDGKELHISGSIGISLFPDDGEDIWTLLRNSDIAMYHAKKNGRNNCEFFKPEMN 317 Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 +R ++ L A++ EL L Y PI+ + + G E L++W HP G I +F+ Sbjct: 318 RQAKERHSMEVALRNALKRDELLLHYQPIVNVNGGKADGFEVLLRWQHPGDGLIYPVKFI 377 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE MI I +++ + I +W++Q P + IN+++ L E + ++ Sbjct: 378 RLAEETGMIIPIGEWLMRQSCLQIKAWQEQGYEVP-RLAINLSAIQFRQKTLMENIVRIL 436 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T + + L +ES ++ + E + L +L ++GI +++DDFGT S LS+L Sbjct: 437 DETGVTGHYLTLEITESELIEDVEETIKTLRQLSELGIEISIDDFGTGYSNLSFLKRYQI 496 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +T+K + S + AI+ +I+ MA + +IA+ + E + L GC Q Sbjct: 497 NTLKIDRSFVRDIPDDPDDTAIIDAILVMAHALGLQVIAEGVENEQQLAYLALHGCTRFQ 556 Query: 937 DSHVASPLGFNSILK 951 + + PL I K Sbjct: 557 GFYFSKPLPAIEIEK 571 >gi|71908454|ref|YP_286041.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71848075|gb|AAZ47571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 714 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 263/577 (45%), Gaps = 14/577 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445 ++ + + R S ++ + P +A + G + ++ Sbjct: 143 LEDITDRVQAQIQLTETELRYRSIFENSVVGMFQSTESGRYLAANPALARLYGYSTPEAL 202 Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + ++ R++F+ ++ R + E + D W+ + Sbjct: 203 ISSLADIASGLYVDPQRREDFKQLIQR--DGRVTNFESE--ITCRDGSRIWIAEHAHAVR 258 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +++G L Y G DITE+ + + A D LTG+PNR DRL + L+ + Sbjct: 259 SADGSFLYYEGTVEDITERHRYQSVLQHQATHDPLTGLPNRNLLEDRLAQAVQLARRKSS 318 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + + +D+D +K IND LG A GD +L+ ++ R+ L+ D +AR G+ F +IL Sbjct: 319 -KVALAFVDLDNFKVINDSLGHAAGDQLLIEISSRLRAALRGLDTVARYGGDEFVLILGE 377 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + + SI P+ L + + SIG + + +L+ A++AMYH Sbjct: 378 QTSMADTMHLLERVLVSIQAPLALEGHGLRINCSIGVSVFPDDAQDLDGLLRVADVAMYH 437 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + + DR ++ L A+EN+EL +VY P + + G EAL Sbjct: 438 AKESGKGQYCFYTRDLNQAAQDRFSLETALGSAIENNELTVVYQPKVDGE-GMVRGFEAL 496 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+ G ++ F+ +AEE I AI +L R +W + + + +N++ Sbjct: 497 VRWNSAGRGLVTPDRFIPLAEETGQILAIGEQVLYAACRTAANWP-LIDGQALSVAVNLS 555 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ L + L + ++ + P ++L +ES++MG+ E + +L ++ +G+ + +D Sbjct: 556 ARQLREPGLPGLVADALAVSGLPPECLELEVTESMIMGDMEHNIRVLKSIKALGVRIAVD 615 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P DT+K + S ++G A+ +II + K ++ I+A+ + Sbjct: 616 DFGTGYSSLAYLQRLPIDTLKIDRSFVSGCNRGGKAMAIPHAIIFLGKTLDLHIVAEGVE 675 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + L GC+ Q + PL ++ L+ + Sbjct: 676 TDEERAILAVCGCNEFQGYLFSRPLQSAAVDTYLQAK 712 Score = 75.4 bits (184), Expect = 5e-11, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 3/100 (3%) Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 ++ +P + G + + G +N L + H DR R + + + R E+R+ Sbjct: 56 LSVSPGCHELTGFRADDLVGKQQNSLESLAHPEDRAAVRGTILAALET-GSRYSIEYRIV 114 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 D + W+ R + + G + G DIT++ ++ Sbjct: 115 CRDGEEKWVQERGVGLRDEAGRQV-LEGYLEDITDRVQAQ 153 >gi|307822007|ref|ZP_07652239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307736573|gb|EFO07418.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 845 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 147/572 (25%), Positives = 281/572 (49%), Gaps = 23/572 (4%) Query: 400 IFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-Y 455 + + LA + + + V D T I G + G + Sbjct: 275 LRDSLKSLGLAKKIIDNTQEGVITTDKYVVIQTCNAGFTKITGYTEEEVIGKTPGIISSG 334 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIG 514 H D++ + + + + G Q E R + + + ++ I + + +I Y Sbjct: 335 RH--DKNFYYAMWEKI--NKYGFWQGEIWNRRKNGEVYPELLTITEIRDDETNEISNYAA 390 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +DI++ K E I AF D LT +PNR+ DRL L ++ ++ ID+D Sbjct: 391 IFSDISQLKSDEEEIKRLAFYDPLTELPNRRLLNDRLAQELAITGRSGK-NGALLFIDLD 449 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LK 629 +K IN+ LG + GD VLV + R+ ++ D +AR+S + F +IL N + Sbjct: 450 HFKNINETLGHSAGDRVLVEVAYRLKLRVRDCDTVARISSDEFVVILTELNEQIGLACNE 509 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRG 688 A ++++I +++ ++ +++SIG A ++ + ++LK A AMY AK G Sbjct: 510 ARYIAEKLQQTICQVYSVMNHKLYISSSIGIAMFSENSDIPPDDLLKQAGTAMYRAKESG 569 Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N ++ F+ S +R++I+++L A++ ++L L Y P + ++G EALI+W+H Sbjct: 570 RNMLQFFQDSMQEAAMERMLIEKELRQALDENQLSLYYQPQVDYH-GTLMGAEALIRWNH 628 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 PK G I +F+ IAEE +I+A+ ++LE+ + W P + INI+ + Sbjct: 629 PKKGFIPPDKFIPIAEECGLIQAVGAWVLEQSFIHLRQWDRLQVHLP-HLAINISPRQFY 687 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 ++ + L+ + SPSRI L F+E ++M + + + + +L+K+G + ++DDFGT Sbjct: 688 HDDFMGILGRLVKQYQISPSRIMLEFTEGLLMNDVDVAIDKIKQLKKLGYTFSIDDFGTG 747 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL ++P D +K + S + E + +II +A+++ ++A+ + ++++ Sbjct: 748 YSSLSYLKHLPVDQLKIDKSFVEDITKNEDDAVFVGTIIAIARHMNLGVVAEGVESKMEL 807 Query: 925 KELTRMGCDYIQDSHVASPLGFNS-ILKLLKE 955 + L + GC Q + + PL + L++ Sbjct: 808 EFLKQNGCLCYQGYYFSKPLPEDQFFEHWLRK 839 >gi|289208212|ref|YP_003460278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] gi|288943843|gb|ADC71542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] Length = 842 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 156/793 (19%), Positives = 316/793 (39%), Gaps = 37/793 (4%) Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL------SKLVNLPSG 248 + V + +F +++ +R L+ T +A L +DF L + S Sbjct: 55 LFAVVVAIGVFAVAYHVRDRRR-LMATLVLATAFLAVGLLDFLHLMTYPQMPDFITPNSS 113 Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY------ 302 + I+ + + + ++ R +G + L Sbjct: 114 QQTIFFWLAARLVGALALLLYVALPLVPRSQGPAPRGMLAGALVLVALLAWVGLWHEQRI 173 Query: 303 -------YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 + IA + + T I+ + +R + + A L+ + ++ Sbjct: 174 PALFIPGEGLTPFKIALEGVVVALHAATLVILLLRPQLMQRPGMPLVAAALMILMASEVF 233 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA----TGYFSQGIFSDGERQSLAV 411 + L + + + ++ I+ V A + I +R + Sbjct: 234 FTLYDNLSDGFFVLGHIYKVAAYALIYWAVFIESVRAPMAQLRAAHRDIELRQQRYEQLI 293 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILD 469 + D V D + ++ + G + G L + + R D Sbjct: 294 DTAPDGVLVTDGGGTILMANRNLERLFGYPRRHLIGQPVENLIPERLREHHRSVRLQQGD 353 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + G++ + R R D + I + + G R DIT++++ I Sbjct: 354 NISERTMGQIP-DLRGRRLDGTEFPVDISLNAFEDQGGR--RITAFIRDITDRQRREARI 410 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D+LTG+PNR DRL + ++ ++ R VM++D+D +K IND G GD Sbjct: 411 QHQATHDSLTGLPNRWLLHDRLAQSIAHASRHEH-RIAVMLLDLDHFKMINDTFGHHEGD 469 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 ++L + +R+ + + R G+ F I+L + L++ + + P + Sbjct: 470 ELLREVAQRLKDAAGTDATIGRFGGDEFMILLPEITDELQVGERGQEILAQFDRPFHTGP 529 Query: 650 -REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706 R+ + +AS+G A + ++ +++ A++AMY AK G N + + + Sbjct: 530 TRQFSSSASLGIALFPQDARDANTLVRYADMAMYEAKRSGRNTYAFYSEHLDAQVRAEQQ 589 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++E L A+E+ +L L + P+I + EAL++W+ P+ G + S F+ AE + Sbjct: 590 LQERLKHALEHDQLALHFQPLIDAHSGAVTAAEALLRWNDPELGAVPPSRFIPSAEANGL 649 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + +++ R + + W I IN+++ +L + A + + SP Sbjct: 650 ILPLGDWVIRRACQQLADW--AQLDVDTSICINVSALQFRQPDLVSRLAAALKEAGASPE 707 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 +++ +E+V M + +R L L+ +G+ ++LDDFGT S L+YL +P D +K + S Sbjct: 708 HLEIEVTETVAMADVALTREHLSGLKALGVRVSLDDFGTGYSSLAYLKSLPIDKIKIDRS 767 Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + G R A ILRS++ + ++ ++A+ + + L R GCD Q + L Sbjct: 768 FIAGIGHDRDAEMILRSVMGLGHSLHLKLVAEGVETAEQLAFLRREGCDLYQGWFYSPAL 827 Query: 945 GFNSILKLLKERF 957 + + Sbjct: 828 SVEEFRATVHSQL 840 >gi|119944283|ref|YP_941963.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] gi|119862887|gb|ABM02364.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 647 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 133/575 (23%), Positives = 255/575 (44%), Gaps = 17/575 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + E +A S + ++ D + I G ++ + G Sbjct: 78 EKEKLAAELVIALE-FRIAATAFESQEGMFITDANNRILRVNKAYIRISGYSAEEVIGQK 136 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 ++ ++ + DS + E + + + I + ++NG + Sbjct: 137 PKLFSS-GRQEKVFYKAMWDSI--NSTDAWEGEIWNSRKNGDIYPGHMTITAVKDTNGMV 193 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 Y+ + DIT K + E I A+ D LT +PNR+ L + + ++ Sbjct: 194 SNYVAMIIDITLDKAASEEINNLAYFDPLTKLPNRRL-LLDELNLALTINARTHQYGALL 252 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----E 624 ID+D K +N+ G VG+ +L +T R+ E ++ D +ARL N F ++L + Sbjct: 253 FIDLDHLKTLNNTRGHDVGNLLLKQVTTRLTESVREGDTIARLGCNEFVVVLENLSPQAI 312 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + ++ P +L + T SIG + ++ S E+LK A++AMY + Sbjct: 313 KATAQTKQMAKKILFTLTQPYSLNAIKYHCTLSIGATIFNGHELGSEELLKQADIAMYQS 372 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F + + + ++ +L A++ ++ L Y + + +G EALI Sbjct: 373 KDAGRNSLCFFNQTMLEAITIRAEMENELHKAIKQNQFQLYYQIQVNG-SGQALGAEALI 431 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G IS F+ +AEE +I I ++L+ + W+ + + +N+++ Sbjct: 432 RWQHPERGQISPFNFIPLAEETGLILPIGQWVLDTACAQLKKWQQNPLTQDLVLAVNVSA 491 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K + E ++ + + P R+KL +ES+++ N + + LRKIGI +LDD Sbjct: 492 KQFHQEDFIEQVKTTLQRHQIIPDRLKLELTESMLVENISDIIIKMNTLRKIGILFSLDD 551 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L YL +P + +K + S + I+R+II M+ ++ +IA+ + Sbjct: 552 FGTGYSSLQYLKRLPINQLKIDQSFVRDLITDAHDRIIVRTIIAMSHSLGIDVIAEGVET 611 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + L GC + Q + P+ + LLK Sbjct: 612 VEEKQFLLNKGCTHYQGYLFSKPVPIDEFEALLKS 646 >gi|187926396|ref|YP_001892741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12J] gi|241665883|ref|YP_002984242.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12D] gi|187728150|gb|ACD29314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12J] gi|240867910|gb|ACS65570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12D] Length = 916 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 139/580 (23%), Positives = 264/580 (45%), Gaps = 11/580 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + +G+ ER LA+ + V IL + G + G Sbjct: 330 AIQKDNVERGLAESEERYRLAISNLHEGVVIISPDGVVQAANASAERILRVRPGQLVGRN 389 Query: 450 R-NWLPYIHINDRDNFRTILD---SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-N 504 R + + + + + + + + + W+ I P+ + Sbjct: 390 RLDPIQRVVDEYGKEIGSTMMPSGQVLRTGEPIFGRVYGLLLKTGELMWVRQNIIPIRRH 449 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + DIT+ K++ + + A D LTG+ NR F+ L + ++ + D++ Sbjct: 450 AEPTPSSVMLSFADITDIKRAEQRLRHLAAHDALTGLTNRSFFIAHLESAIESA-RDESR 508 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + +D+D++K +ND G A GD +L S R+ + + D++ARL G+ F I++ Sbjct: 509 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQR 568 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 +IA A + +++ P + + + SIG A + I+ S++L++A+ AMY A Sbjct: 569 VEGKRIALLAERLLQAMREPFDTVNGRYYLGVSIGVALYPHDGISGSDLLRSADAAMYRA 628 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + + + ++ L A EN+EL LVY P L IVG EAL+ Sbjct: 629 KQNGRNRAQFYTAELNARLQRRYMLENALRDARENNELQLVYQPKYDLASHRIVGAEALL 688 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+ K G IS EF+ +AEE +I I ++L R + W + + +N+++ Sbjct: 689 RWNSAKLGAISPVEFIPVAEETGLIVPIGAWVLRRACEQAVIWYEALGY-DFRMAVNLSA 747 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ ++ ++ + P+ +++ +ES++MG + R + L GI +++DD Sbjct: 748 RQFQAGDVVPMIEQTLADSGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 807 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P VK + S +TG +A+ +I+ MA+ + T+ A+ + Sbjct: 808 FGTGYSSLSYLQRFPISNVKIDRSFITGIPHDPDSVALTEAIVAMARALGMTVTAEGVED 867 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++ L + GC IQ ++ P+ +LL+ +V Sbjct: 868 ADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLSVV 907 Score = 47.3 bits (111), Expect = 0.013, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 7/122 (5%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 S D V + V P A +LG + G IH +D L V Sbjct: 49 SSDAVLLT-VDGRLVQANPAAARLLGAQDPAQLAG--LQLAGLIHPDDVAQVVPRLAGMV 105 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 E R+ AD + G + + ++ + +LE Sbjct: 106 SSGVSAQPVEHRLVRADYTHVLVASEAAA-CEHEGQPAVMLVLREAVS--RHALERHAVQ 162 Query: 533 AF 534 A Sbjct: 163 AR 164 >gi|291288785|ref|YP_003505601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Denitrovibrio acetiphilus DSM 12809] gi|290885945|gb|ADD69645.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Denitrovibrio acetiphilus DSM 12809] Length = 1019 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 144/565 (25%), Positives = 272/565 (48%), Gaps = 15/565 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 I + E+ LA + D + + V+ ++ G + + G R + P Sbjct: 460 EIKNAEEKTLLASKVFDNTLDGIMIVKKDGEIVSCNKAFSSTTGYSEEEIIGKNARMFRP 519 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 IH + F L + ++ G+ E + D + ++ + NS G+I +I Sbjct: 520 GIHPD---YFYEDLWKNL-FKYGKWDGEVWQKKKDGEIFPTLMSCSSIRNSEGEITEFIS 575 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + +DITEQK+ E I A D+LTG+PNR F D+L + +M +D+D Sbjct: 576 VLHDITEQKRYEEQIKYQATHDSLTGLPNRIYFTDKLAEQI--PKNHLPSCIGIMFLDLD 633 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND LG GD VL + RI + PD+ AR SG+ F + N + + Sbjct: 634 RFKNLNDTLGHTTGDKVLEIIAERIRNTVHGPDMAARFSGDEFTVFFTGVKNQDALIEMV 693 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + K I+ P+++ E+ + S G + + + +T+SE++KNAE+AMY AK G N+++ Sbjct: 694 KNVTKRISEPLHIQGYELFIQTSAGISVYPDNGLTASELIKNAEIAMYQAKQTGKNNIQL 753 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + DR +++ L A+EN E L Y P I L + ++G+EAL++W +P+ G I Sbjct: 754 YTDGLDETIRDRFIMESKLNRAIENDEFSLHYQPKIDLATDSVMGMEALLRWHNPELGFI 813 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ ++E+ +I I ++++R D + + I IN++ + + L E Sbjct: 814 PPDKFIPLSEDSGLILPIGEWVMKRALSDTAKLHKE-GFADLKIAINLSLRQFMKKGLVE 872 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ I + ++ +E++ + ++ + + I +DDFGT S + Y Sbjct: 873 FVEKSIETAGLNNRNVEFEITENIFTEDLSTISRIMNEISNLNIKFAIDDFGTGYSSIGY 932 Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P T+K + S ++ S +I+ S+I M+K++ ++A+ E + L M Sbjct: 933 LKKMPISTLKIDRSYISKIDSDTDSESIVSSVILMSKSLGLNVVAEGAETESQVNMLKDM 992 Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955 GC +Q + P+ ++ L+ ++ Sbjct: 993 GCSIVQGYYYGKPMPYDEFLEFVRN 1017 Score = 39.5 bits (91), Expect = 2.5, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 6/114 (5%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 + WD + + + G S +M G + + I + + L++ Sbjct: 361 IATWDRNGNITLFNNALEKLSGYDSSNMLGKHLSHIYNIFP----HAKVALENNDTDVSS 416 Query: 478 RLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 Q+E + + + +++ I + S+ I DITE K + E L Sbjct: 417 SAQFESALTHRESGENSYILWNITDIF-SDTKYAGTILQGIDITEIKNAEEKTL 469 >gi|120602704|ref|YP_967104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris DP4] gi|120562933|gb|ABM28677.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris DP4] Length = 997 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 148/566 (26%), Positives = 272/566 (48%), Gaps = 8/566 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 Q + +R + + ++ + P +A + G + + + Sbjct: 417 ERRSVEQALRRAEQRYRGIFENAVEGIFQIAPDGMLLRGNPAMAEMFGYSDIESLREVGS 476 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + +EFR R +++ W+ + R +++++ L Sbjct: 477 MAEAMFAE--ATSSDVFFHQLEMTGNVSGFEFRARHREDRELWLRVNARRVADAHDATLF 534 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y G DIT +S + + A+ D LTG+PNR FLD L + +A + TV+ + Sbjct: 535 YEGFLTDITISHRSRQQLAHQAYHDPLTGLPNRLLFLDHLQLAMQRAARRADAMFTVLYL 594 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG +GD +L + + ++ D +AR G+ F I+L N Sbjct: 595 DLDRFKIINDSLGHGIGDALLREVACTLRRCVRDVDTVARFGGDEFAILLEDTGNCAGAV 654 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A +R+S+A P+N+ E+ TASIG T +T ++L++A+ AMY AK G + Sbjct: 655 RIARRIRESLAQPVNIAGHEVFTTASIGIVLQTRDYLTPEDILRDADTAMYRAKEMGKSR 714 Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F + ++ DL AVE EL L YHPI+ L D + G E+L++W Sbjct: 715 FKVFNARMREDTLRLMALETDLRFAVERGELSLRYHPIVDLEDGSLHGFESLLRWRRGN- 773 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 ++S +EF+ +AE+ +I I F++E + R + +W+D A I + +NI+ + L+ Sbjct: 774 EDVSPAEFIPVAEDAGLIADIGAFVIEDVCRQVAAWQDTACDCGI-VHVNISGRQLMRPG 832 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + ++ + + S ++ +ESV++ + + ++ +LR++GI L LDDFGT S Sbjct: 833 FAQMVDEILRRHGIAGSCLRFEVTESVLVRHGTLAVSVMHQLRELGIRLCLDDFGTGYSS 892 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P +++K + S + G E A++R I+ + ++ ++A+ + E L Sbjct: 893 LGYLRRLPVESLKIDRSFVWGMEKDEAGRALVRGILTLGLHLGLEVVAEGVETEEQAVLL 952 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGC Y Q A PL + + Sbjct: 953 RDMGCRYGQGFLYAKPLLSERVPPFV 978 Score = 51.5 bits (122), Expect = 8e-04, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 27/204 (13%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL-------GSGDIVWDWDIVRDRVTT 430 + ++GF G + A+ G G+ + + + Sbjct: 227 LARVMGFMAADLARFVGGLEAEVKRSTGELRTALGELSAIVGGMGEGLLVVSAEGLVLRS 286 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRA 487 A++ L + LP +D R L S R E+ Sbjct: 287 NEAFASLFCLEPFGCPVALDALLPLSGQDDSGLRGVLEDALQSMARGEAARHSGEYPFIC 346 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D W+ I P++ G + + D+T + ++ A +D Sbjct: 347 GDGVRRWVGCTIEPVT-IGGKPC-IVCLVQDVTARNEAQ-----QALRDA---------- 389 Query: 548 LDRLTTILDLSATDDNLRPTVMVI 571 D+L + D +++ Sbjct: 390 YDKLEAEVASRTRDLRRANAQLLL 413 >gi|226939565|ref|YP_002794638.1| hypothetical protein LHK_00636 [Laribacter hongkongensis HLHK9] gi|226714491|gb|ACO73629.1| Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Laribacter hongkongensis HLHK9] Length = 759 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 143/573 (24%), Positives = 267/573 (46%), Gaps = 16/573 (2%) Query: 388 QHVLATGYFSQGIFSDGER-QSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + V+ + ER LA S + + D +T P I G Sbjct: 181 ERVIVGVGLDISARLETERTLQLAATVFENSSEGILLTDADGTLITVNPAFTRITGYTEE 240 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G H+ + ++ S + G Q E R D + + + + + + Sbjct: 241 QALGRRSRMFRTDHVG-QATNMQMMQSLAEH--GHWQGEMFDRHRDGRLYPVWLSLSAVY 297 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + + Y+G+ DI+ +K + + ++ A D LT + NR + +L I Sbjct: 298 DED-RVSNYVGVFTDISRRKAAEDRLVFLASHDPLTRLLNRDALFRKLEDICLSGIEQ-- 354 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V+ ID+D++K IND G A GD++L + R+ ++ +LAR G+ F ++L Sbjct: 355 -SFAVLFIDLDRFKLINDSFGHATGDNLLRIVAARLSFVVGSNALLARQGGDEFTLLLED 413 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + D A + ++ PI L +E+ +TASIG A ++ +L++A+ A+Y Sbjct: 414 TGQRTAVIDMANRLLDELSQPITLENQELHITASIGIALAPEHGKDAATLLRHADTALYR 473 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N F + + R+ ++ L A+ ++L L Y P I + +VG+E L Sbjct: 474 AKDAGKNTFAFFTHTLHGLSNQRLALENALRHALPRNQLTLAYQPQIDPHRQRLVGVEVL 533 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G +S + F+ +AEE +I I ++LE R + +W + +N++ Sbjct: 534 LRWHHPELGQVSPATFIPLAEETGLILPIGRWVLETACRQLAAWDTAGFSVG-HVAVNLS 592 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + D L ++A++S + + R++L +ES ++ NP + L+ L+++G+ L++D Sbjct: 593 AHQFNDPGLTHHLKAVLSDSGLAARRLELEVTESTLINNPTAAIALMTELKELGVRLSID 652 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+ L P DT+K + + ++G +AI +II MAK + +++A+ + Sbjct: 653 DFGTGYSSLAQLKRFPLDTLKIDRTFVSGIPADASDLAITEAIIAMAKKLSLSVVAEGVE 712 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 L R G + IQ + PL ++ Sbjct: 713 TADQRDFLARCGSELIQGYFYSPPLAAEALHSF 745 >gi|307823551|ref|ZP_07653780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307735536|gb|EFO06384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 1218 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 139/562 (24%), Positives = 260/562 (46%), Gaps = 19/562 (3%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R + + + + D + + I G ++ G L + + F Sbjct: 660 RIAAIAFETQEAMMITDTHQVILKVNQAFVRITGYSAEEAIGQTPALLKSGYQD--AKFY 717 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + R G Q E R + I I ++N+ G+++ Y+G +DI++ KK+ Sbjct: 718 QTMWESL-VRDGYWQSEIWNRRKCGDVYPERITITAVTNAEGNVVNYVGTFDDISQHKKA 776 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I F D+LT +PNR+ L+RL +++ D + +M++D+D++K IND LG Sbjct: 777 EETIHDLVFYDSLTKLPNRRLLLERLKHSIEVERRDGK-QLALMMLDLDRFKVINDSLGY 835 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARL---------SGNRFGIILISENNSLKIADFAIA 636 GD++L + RI L+ DI+ARL G+ F ++L ++ A A Sbjct: 836 LAGDELLQQVATRIATRLRKVDIVARLRKVDLLAHLGGDEFIMLLEDITHTEDAARVAEQ 895 Query: 637 MRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ P L EI +TAS+G + + ++ A+ A+ AK G + Sbjct: 896 VIAILSKPFYLSQGDEIHITASVGISLYPQHGDNPDTLISYADAALNKAKAEGRGCFAYY 955 Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 R+ ++ L A+E EL + Y P + ++ I+G EAL++W P G I+ Sbjct: 956 SEDLTLAARQRIALEARLRKAIEQQELRVFYQPQVDIVTGRIIGAEALVRWLDPIEGLIA 1015 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AEE +I I ++L R W D PP+ + +N+++ +++ Sbjct: 1016 PIHFIPLAEETGLILEIGAWVLRETCRQGRQWLDAGL-PPLTLAVNVSAHQFRRSDIGAL 1074 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++++T + +++L +ES +M + + LL LR G+ +DDFGT S L+YL Sbjct: 1075 VTTVLNETGFPAEQLELEMTESGLMESQSKVMGLLNDLRSQGVRFAIDDFGTGYSSLAYL 1134 Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + P D++K + S + + + I +II M + ++A+ + + L G Sbjct: 1135 KHFPLDSLKIDKSFIDDIPHLQDDMEIAATIIAMGHMLGFKVLAEGVETVEQLAFLQDKG 1194 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 CD Q + P+ + ++LL Sbjct: 1195 CDAYQGYLKSKPVPADEFVRLL 1216 Score = 70.4 bits (171), Expect = 2e-09, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 7/174 (4%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + A + + + V+ + Q + R + D + + Sbjct: 494 GSTKTVLANASSIKQSLGSVHLVVLYDINERKKAEQKVLEREARYRAVTYSASDAIITTN 553 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-- 480 + TI G + G L + D ++ + + Sbjct: 554 SAGNITGWNRGAETIFGYTETEVSGQPLTLL--MPPRYHDPHLIGMERVLSGGVSHINDK 611 Query: 481 -YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 E D + + + S G GI DITE+K++ + A Sbjct: 612 TVELAGLRKDGSEFPLELSLAKWEASEG--WFVTGIIRDITERKQAEADLRIAA 663 Score = 56.9 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 23/210 (10%), Positives = 53/210 (25%), Gaps = 11/210 (5%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 + I I + ++ + G + +G + + Sbjct: 335 YFLIGIYYAMIGSIQSLTRSARVFAGGDMRERINLGTRDELRQVGDSFNEMADGFNALLA 394 Query: 399 GIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 D R + S + D ++ P G + W Sbjct: 395 ARLEDKASETRLRSIIDASPVPMVLNDDQQNITFLNPAFIQTFGYTLEDIPTLTDWWAKA 454 Query: 456 I-HINDRDNFRTILDSFVG---YRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 R+ + + + + E +R ++ + S G + Sbjct: 455 SPDPEYREWMAATWQTTLETVLHDDSQFNPVELNIRCHSGSTKTVLANASSIKQSLGSVH 514 Query: 511 RYIGIANDITEQKKSLEGI-LCNAFQDNLT 539 + DI E+KK+ + + A +T Sbjct: 515 LVV--LYDINERKKAEQKVLEREARYRAVT 542 >gi|120554062|ref|YP_958413.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Marinobacter aquaeolei VT8] gi|120323911|gb|ABM18226.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] Length = 819 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 150/576 (26%), Positives = 270/576 (46%), Gaps = 11/576 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + ++ + ++ + S A+ S V D + + G + + Sbjct: 240 MRERLIDDVTRRERDEAEIRKFSKAIDQSPSSVLICDRQWRIEYANRKFSQLTGNSPSEI 299 Query: 446 HGPIRNWLPYIHIN-DRDNFRTILD--SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + I D R + R G Q E + + +W + + P+ Sbjct: 300 IGKHPS--SLIDPGVDSHEARQLWKSIRLQVQRVGVWQGEVNSTRKNGERYWEQLVVTPI 357 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 ++NG+ Y+ + DI+ +K+ + +L A D LTG+PNR LDRL L + D+ Sbjct: 358 KDNNGESTGYLILGEDISIRKRYEQQLLRQANYDILTGLPNRMLALDRLKLALAQARRDE 417 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + + VM +D+D +K IND LG GD +L+ RRI L+ +ARL G+ F ++L Sbjct: 418 S-KVGVMFLDLDNFKHINDTLGHDAGDTLLIEAARRISSCLRGTSTVARLGGDEFLVVLP 476 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 N + A + K+ A P L +E+ VT SIG A++ S +L++A+ AMY Sbjct: 477 GLNGPDASSQVAERILKTFAPPFMLSGQEVFVTTSIGIATFPDDSDNSGTLLQHADAAMY 536 Query: 683 HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AKH+G + F +R+ ++ + A+E E L + PI+ +V EA Sbjct: 537 EAKHKGKSAYARFTPEMSEVSHERLQMESHMRKALELGEFELYFQPIVDTASGGLVAAEA 596 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W++P G + F+ +AEE +I I ++++ + W+ I I +N+ Sbjct: 597 LLRWNNPAMGMVMPDRFIPLAEETGLIIPIGEWVVKEACQAAYCWQAMTGRE-ISIAVNV 655 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + D + + ++ + P ++L +E +++ N + +L +L K+GI L++ Sbjct: 656 SPRQFRDPGFTDAIMRALNDSNLRPELLELEITERLILDNSIETADILKQLDKVGIRLSV 715 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL PFDT+K + S + + +++R+II MA ++ ++A+ + Sbjct: 716 DDFGTGYSALSYLKSYPFDTLKIDKSFVQDVLKENEDASLVRAIINMAHSLGLKVVAEGV 775 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 E L CDY Q + PL + L+ Sbjct: 776 EEEDLTHFLKAEHCDYSQGYFYSRPLPEQDFIHWLE 811 >gi|16127324|ref|NP_421888.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] gi|221236127|ref|YP_002518564.1| sensory box/GGDEF family protein [Caulobacter crescentus NA1000] gi|13424748|gb|AAK25056.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] gi|220965300|gb|ACL96656.1| sensory box/GGDEF family protein [Caulobacter crescentus NA1000] Length = 748 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 142/620 (22%), Positives = 270/620 (43%), Gaps = 19/620 (3%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 L L + L I+ A V V+ + + ++ Sbjct: 87 MALADFTTDSLSYRASDLLRGFIVTEAGRYLGVGTVLALLQAANETNRRGVEALALAKAE 146 Query: 404 GERQSL----AVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 ER V +V+ V LG + G IH Sbjct: 147 VERAQTFMTGIVEAMPAMVFVKRADDHSYVLLNRAGEKTLGFKRDEVIGKTDAD---IHD 203 Query: 459 NDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + +R + + R+ E V D + + + N+ G +G++ Sbjct: 204 AELAALYRERDRAVLDSGEVRVIEEDHVPRKDGGMAILRTKKIALLNAEGRAEYLLGVSE 263 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI E+K++ I A D LT +PNR F L L + + V +D+D++K Sbjct: 264 DIAERKRAEAQIARLAHYDPLTDLPNRVLFQKSLGEALARRSRKGDA-LAVHFVDLDRFK 322 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG +GD +L R+ ++ D +ARL G+ F I+ ++S A + Sbjct: 323 TVNDTLGHPLGDALLKIAAERLRGCVREGDTVARLGGDEFAIVQTGLDDSNGATRLAARI 382 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696 +++A P +L + + AS+G + + + E+LK A++A+Y AK G F Sbjct: 383 VEAMAAPFDLQGHHVVIGASVGVSLAPTDGDDADELLKKADMALYRAKADGRGAYHFFER 442 Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + R ++ DL A++ E L Y P+ L DE + G EAL++W HP+ G +S + Sbjct: 443 AMDEQLQARRALELDLRRALQAGEFELFYQPLYHLGDERVTGCEALLRWRHPERGMVSPA 502 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AEE+ +I + ++L R + +W + + + +N++ D L + Sbjct: 503 DFIPLAEEIGLIVQLGEWVLRRACAEAANWPEH-----VRLAVNLSPAQFRDRGLVRTVV 557 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ + R++L +ESV++ + + + +L L+ +G+ +++DDFGT S LSYL Sbjct: 558 SALAASGLPAQRLELEITESVLLQDSQANMTMLHDLKALGVRISMDDFGTGYSSLSYLRS 617 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + + + +AI+++++ + ++ A+ + + + L + GC Sbjct: 618 FPFDKIKIDQTFVRDILHDSDAMAIIKAVLDLGASMGVVTTAEGVETQAQLDALRQQGCA 677 Query: 934 YIQDSHVASPLGFNSILKLL 953 IQ ++ P + I K+L Sbjct: 678 EIQGYFISRPAPASEIAKML 697 >gi|83313253|ref|YP_423517.1| hypothetical protein amb4154 [Magnetospirillum magneticum AMB-1] gi|82948094|dbj|BAE52958.1| Hypothetical 918 kDa protein Y4LL [Magnetospirillum magneticum AMB-1] Length = 833 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 140/596 (23%), Positives = 266/596 (44%), Gaps = 10/596 (1%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 L + + + I H + ++ + + E + + D++ D + Sbjct: 237 LSLASMELGGQRLYVAIGHDITLRKANEAELVNQKEWLTTLINALPDLICFKDGKGRWLV 296 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQYEFRVRA 487 ++GL+ G L + N ++ T D L YE + Sbjct: 297 ANQFYLDLVGLSGVDYVGRTGPELARLSHNFQEFLTTAKETDERAWKDGKPLSYEKAMET 356 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + P+ +G + + D+TE+K + I A D LT +PNR F Sbjct: 357 PSRGTKVFDMLKIPLFKPDGRRSGLVLVGRDVTERKLAAARIQHLAHHDALTELPNRVLF 416 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL L + + +M +D+DK+K IND LG VGD +L ++ +R+ ++ D Sbjct: 417 QERLRQSLAQAKRS-GWKLALMFLDLDKFKDINDTLGHHVGDLLLRAVAKRLTRCVRETD 475 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +ARL G+ F +IL + ++ + A ++ IA P L E E+ + SIG + Sbjct: 476 TVARLGGDEFAVILTNLDDLEGASRVAESIIAGIADPFGLDEHEVRTSTSIGITLYPDDS 535 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725 I + ++LKNA+LAM+ +K G N+ + R I+ DL A+ +L L Y Sbjct: 536 IDADQLLKNADLAMFRSKAEGRNNYHFYVAQMDAEVRARKLIENDLRQALGTEQLELHYQ 595 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P++ + IVG EAL++W+HP G + EF+ I E +I + ++L R + W Sbjct: 596 PLVEMSSRRIVGCEALLRWNHPTRGWVPPGEFIPIIERSDLIGPLGRWILHRACQQGREW 655 Query: 786 RDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 + P+ I +N++ + + ++ +T ++P +++L +E + M N + + Sbjct: 656 QRDGL-EPMKIAVNLSPAQFKQTQSIIAMVADILDQTGFAPDQLQLEITEGIAMQNVDAT 714 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 +L LR +G+ +++DDFGT S L+YL P D +K + S + A++ +I Sbjct: 715 IEVLQSLRAMGVVISIDDFGTGYSSLNYLKRFPVDKLKIDRSFVVDIGLHPDNAAVVEAI 774 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + + ++ T + + I + + L D Q + + + + L++ + P Sbjct: 775 VNLGHSLRTRVNVEGIETKEQLDFLQAHKVDEAQGFYFSKAVPADQFAHLVRTKSP 830 Score = 43.8 bits (102), Expect = 0.14, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 45/167 (26%), Gaps = 19/167 (11%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 + V + + Q ++ V + D + + Sbjct: 121 TGLIQIFDVTSMASRETLLRQQARTMEALAENYRLSELHNRAIVDNTADAIVTFGEDGGI 180 Query: 428 VTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 T P I G A + G + L I + F+ +R E Sbjct: 181 GTYNPSAERIFGYAPPEIVGKQISLLIPELIKPD----------PFLDHRT-----EVVG 225 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + + M G Y+ I +DIT +K + ++ Sbjct: 226 VRKTRAHFPLELSLASM--ELGGQRLYVAIGHDITLRKANEAELVNQ 270 >gi|228955548|ref|ZP_04117551.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804110|gb|EEM50726.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 536 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 136/535 (25%), Positives = 255/535 (47%), Gaps = 11/535 (2%) Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + + T+LG + + + I+ D + + E R Sbjct: 3 GNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEMINAFHRVKKGY--SISLEIR 58 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 + +++ + P+ I + DITE K+ E I A+ D LT + NR Sbjct: 59 AYHKNRDIYYLHVTAVPIFLKE-KISGVYLMIKDITESKQQQEQINFLAYHDTLTELANR 117 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 ++F L + + VM +D+D++K IND LG VGD +L+++ +R+ + Sbjct: 118 RAFHQHLEQAIARAKISKK-PFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKRLERIAT 176 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 LARL+G+ F I++ + + A + ++ P + + + ++ SIG A + Sbjct: 177 SNMKLARLAGDEFTILIENYKKKPDVQKIADRIVAAMNEPFEIENQHLQISPSIGIAIYP 236 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYL 722 + + +L++A++AMY AK++G N + ++ I++DL +A+ N E YL Sbjct: 237 EAGEDALSILQHADMAMYEAKNKGKNGSSLYTKELYKKMERKARIEKDLPIALVNKEFYL 296 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 VY P I +I+G EALI+W HP G+IS EF+ I EE + + ++L+ + Sbjct: 297 VYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVEETPQVVPLGHWVLQEACLQL 356 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W + I +N+++K+ ++L E + +++ P + L +E + M + + Sbjct: 357 KIWH-TFGYQNLKISVNLSAKEFRQDQLIESISQILNDVQVDPKYVTLELTERIAMIDEK 415 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILR 900 + L L +L++ GI ++DDFGT S L+YL P DT+K + AI+ Sbjct: 416 ETLLRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVS 475 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +I+ +A + +++A+ I E +K L + C Y+Q + + PL N +K L++ Sbjct: 476 TILSLANTLNLSVVAEGIETEKQLKFLQKHNCKYMQGYYFSKPLTSNQFIKFLQK 530 >gi|329938501|ref|ZP_08287926.1| sensory box/GGDEF family protein [Streptomyces griseoaurantiacus M045] gi|329302474|gb|EGG46365.1| sensory box/GGDEF family protein [Streptomyces griseoaurantiacus M045] Length = 715 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 136/579 (23%), Positives = 251/579 (43%), Gaps = 14/579 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A G +Q + + R G+ + D+ + + + + G + Sbjct: 135 EAISAAALKAQGVVAQALHASEARFRAVFEGAAIGISIADLEGNVLEVNGALLRMFGGSE 194 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + H D + V R E D W + + + Sbjct: 195 GLLRDRNVAEWS--HPEDAPQVWRLYQELVRGEREHYHVEKPFYRPDGTVLWTNLTVSLL 252 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +++G + + D TE++ + A D LTG+PNR F +RL L + Sbjct: 253 RDADGAPQYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALS---AGE 309 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIIL 621 R + +D+D +K IND LG A GD +LV + R+ +++ARL G+ F + Sbjct: 310 GQRFGLCYLDLDGFKTINDSLGHAAGDRLLVEVADRLQGCATAPGEMVARLGGDEFVALT 369 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + D A + +++ P+ + RE+ V SIG + + +E+L++A++ M Sbjct: 370 TGPDTERGVDDLADRIMNALSGPVRIDGRELLVRGSIGVVEGPAGERGPAEVLRSADITM 429 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK GGN E + + L A++ E ++ Y P++RL D E+ G E Sbjct: 430 YRAKSAGGNRYELADPEADARAITRHGLTTALPAALDRGEFFIEYQPLVRLDDGEVHGAE 489 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILI 798 AL++W HP+ G + F+ +AE +I + ++LE R W+ Q P+ + + Sbjct: 490 ALVRWLHPQHGVLGPDRFIGLAEHTGLIVPLGRWVLEESVRQARDWQRQHGEDFPLRVNV 549 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ L L ++ +T P + L +ES ++G + L RL ++G+ + Sbjct: 550 NLSPCQLTHPGLVSDTVEILERTGVEPEALCLEVTESALIGADDDLLKPLRRLAEMGVDI 609 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTI 913 LDDFGT S L+ L +P +K + S G + I+ I+ +A +++ T+ Sbjct: 610 ALDDFGTGYSNLANLRRLPVSILKLDRSFTQGMQQYPADPVDLKIVEGIVTLAHSLDLTV 669 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + ++L +GCD Q + A P + + +L Sbjct: 670 TVEGVETGAQAEQLRVLGCDTAQGWYYARPGPPDRLREL 708 >gi|302186773|ref|ZP_07263446.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 639 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 149/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394 + + + + L + + Q + G L+ ++ F + A Sbjct: 14 LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIIGGE 73 Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + D +R LA + + V D V I G + + G Sbjct: 74 ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133 Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + H L S G+ E R + + IR + +G Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQA 188 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ + +DIT K+S + + A D LT +PNR DR++ L + ++ Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALL 247 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 V+D+D ++ IND LG +GD+VL + R+ L +ARL G+ F +++ + + + Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVARLGGDEFALLVKNCTHMVH 307 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A A + + P + ++ VTASIG + + +T+ ++L+NA+ A++ AK+ G Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKNDGR 367 Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + + RV + +L A+E EL + Y P+ L+ I +EAL++W HP Sbjct: 368 EGFALYTEELTAHAQQRVQLASELRQAIEQDELRVFYQPVYDLVSGRICAVEALVRWQHP 427 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G +S +F+ IAE+ +I I+ ++L R + +W + +N++S+ Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLADGVSIA-SVAVNVSSRLFSR 486 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ + ++++T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT Sbjct: 487 GDVDRQVAKVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L L +P +K + + G IAI+R++I +A ++ ++A+ I Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRTVIALASSLGMRVLAEGIEHASQAS 606 Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949 L GC+ Q A P+ SI Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630 >gi|332529256|ref|ZP_08405219.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC 19624] gi|332041266|gb|EGI77629.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC 19624] Length = 1045 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 149/585 (25%), Positives = 265/585 (45%), Gaps = 25/585 (4%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + S+AV + VW WD R+ +LG ASGS+ R + IH D Sbjct: 462 RDQQQLLSIAVESAALGVWQWDFASGRLEVNERFYALLGYASGSLELTARTLVDLIHPED 521 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDI 519 D L + + R + + RVR AD ++ WM+ + + G R G+ D+ Sbjct: 522 LDAMSRALRANLRDSRRPVHVQMRVRHADGRWRWMLFSGTVVSRDGRGRAARMAGVCYDV 581 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK+ E + +A D+LT +PNR L R+ LD + + V+ +D D++K++ Sbjct: 582 SAQKELEEQLRQSARIDSLTHLPNRAELLRRIRAALDRARREPGYGFAVLFMDFDRFKQV 641 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPD------------------ILARLSGNRFGIIL 621 ND LG + GD++L + R+ E L+ D + AR+ G+ F ++L Sbjct: 642 NDTLGHSAGDELLRQIAGRLQESLRAGDAFVQASDIDVLTGQPAQQLAARIGGDEFVVLL 701 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + L A + +++A P + ++ TASIG + T +L++A++AM Sbjct: 702 DNIRSDLDAKVVATRLLQTLAEPYEIGGHRVSSTASIGIVTPTHMADDPDSVLRDADIAM 761 Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK +G E F D ++ DL A+ E+ +VY P+I L + +E Sbjct: 762 YEAKRQGRGRYELFEPSLRKRVHDDAELENDLRQALARDEIRVVYQPLIDLATGRLASVE 821 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILI 798 AL +W HPK G IS F+ +AE +I + +L +++ R P + + Sbjct: 822 ALARWHHPKRGLISPLAFIPVAEGSGLIGPLGERVLRTACHELVRLRQMLGDRAPQTVSV 881 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ L + + L+ T P + L +ES+ + E + +L + +G++L Sbjct: 882 NVSRAQLRQTDFVARLSELLRSTGIGPEALMLEVTESLAAQD-EGVQSVLREVSALGVAL 940 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAK 916 +LDDFGT S LS L +P + VK + S ++ + + ++ + I MAK + +A+ Sbjct: 941 SLDDFGTGYSSLSCLHALPVNQVKVDRSFVSEALDSNYHRVMIEATIRMAKALHLQTVAE 1000 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 I + +G + Q + PL + ++ + Sbjct: 1001 GIETLEQAALMQYLGINKGQGYLYSHPLNAGELEAWAGQQAAHTR 1045 Score = 61.1 bits (147), Expect = 1e-06, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 5/132 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 +L + + V D + GL + G L +D + Sbjct: 222 LALVAERTANWVAMLDGAGRVLWCNDAFLRGKGLPREQVIGVQGVLLGQ--ADDGEAREQ 279 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L + R ++ E RAAD + W+ + +P+ + G+ +A DITE Sbjct: 280 ALLEELRQGR-PVRTEILHRAADGREVWLDVDYQPIRGAEGEPQGCTLVATDITE--AQS 336 Query: 527 EGILCNAFQDNL 538 + + A D + Sbjct: 337 QRLRLRALIDAV 348 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 13/138 (9%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-- 456 S R + V D+ + A +LGL ++ G + + Sbjct: 333 EAQSQRLRLRALIDAVPVGVVLQDLEGRVLDCNVLAAEMLGLPVDTLVGRVGLSAQGVTT 392 Query: 457 -------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + D + L + R + + W++ +P+ ++ G + Sbjct: 393 VRADMTPYPEDERPTQRTLRTGQPLRAESVG----IVLPGAPVRWLLTNTQPLRDAAGHM 448 Query: 510 LRYIGIANDITEQKKSLE 527 D+TEQ+ + Sbjct: 449 TGVASSVIDVTEQRDQQQ 466 >gi|94270288|ref|ZP_01291701.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1] gi|93450865|gb|EAT01886.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1] Length = 941 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 139/587 (23%), Positives = 248/587 (42%), Gaps = 17/587 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + ++ +++ E + + + D V+ A G Sbjct: 348 MLASLAEYLAPLLAARLESRRAEELVARVLETIDEGFIIIDHEFKIVSANRAYAESAGYP 407 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIR 498 + G + H D+ + D V + A + ++ + Sbjct: 408 LAEVIGRHCYQVS--HQIDQPCYLNGEDCAVQHVFNTGEPHTAVHTHYTAAGEPLYVETK 465 Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 P+ + G + R I + DIT++K + I AF D LT +PNR+ F DRL Sbjct: 466 AYPLERDDLGTVRRAIEVVTDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAFSA 525 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 SA V+ +D+D +K +ND G VGD +L R+ ++ D ++R G+ F Sbjct: 526 SARSGQ-HGAVLFLDLDNFKTLNDTRGHDVGDLLLTMAAERLQVAVRANDTISRQGGDEF 584 Query: 618 GIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 ++L + + A A +R ++ P +L E + SIG + + + E Sbjct: 585 MVLLNNLSPERHAAISQAGRVAEKIRAALDQPFDLDGYEHHIGVSIGLSLFLGHDTPADE 644 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730 + K A+ AMY AKH G N V F + DL A+ + L Y P Sbjct: 645 LFKRADAAMYQAKHAGRNQVRFFDPEMQAELEQASALVVDLRQAIWQGQFQLHYQPQTS- 703 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 D I+G EAL++W HP+ G +S +F+ +AEE +I I ++L+ + +W D Sbjct: 704 NDGRIIGAEALLRWRHPERGPVSPMQFIPLAEESGLILPIGHWVLQEACGQLAAWADLPA 763 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + +N++++ E ++ +++ T P +KL +ES+VM + + Sbjct: 764 AGNCKLAVNVSARQFRQPEFVAEIRRILAATGADPKLLKLELTESIVMTELADTVSKMQE 823 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 LR +GI ++DDFGT S L+ L +P + +K + + + AI+ +II M + Sbjct: 824 LRDLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMGRT 883 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ +IA+ + + + L R GCD Q + P+ LL Sbjct: 884 LDIQVIAEGVETKEQLATLARYGCDAYQGYLFSRPVPAAQFAHLLTS 930 >gi|257094133|ref|YP_003167774.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046657|gb|ACV35845.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1006 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 138/560 (24%), Positives = 248/560 (44%), Gaps = 14/560 (2%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 ER + S ++ D + I G A+ G L + +F Sbjct: 452 ERIAATAFESQQGMFITDANAVILRVNQAFTDITGYAADECIGQTPKLLSSGRHD--ASF 509 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + R G Q E R + + I + + +G + Y+ D++ K Sbjct: 510 YAAMRESIE-RNGVWQGEIWNRRKNGDVFPEWLTISSVRDGDGVVTHYVSALTDMSAHKA 568 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + E I AF D LTG+PNR+ DRL + S + + ++ ID+D +K +ND LG Sbjct: 569 AQEEIRHLAFYDALTGLPNRRLLHDRLRVAIASSVRSER-QGALLFIDLDNFKTLNDTLG 627 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMRK 639 +GD +L + +R+ ++ D +ARL G+ F ++L + + A + K Sbjct: 628 HDMGDRLLQQVGQRLSSSVREGDTVARLGGDEFVVMLENLGERPEEAAGQSRIVGEKIIK 687 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P +L + T S+G + ++ E++K A+LAMY AK G N + F Sbjct: 688 LLNRPYDLSGHDYHNTPSVGITLFGGQQVGIDELMKRADLAMYEAKASGRNALRFFDPRM 747 Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 I++DL AV +L Y P + +++G EAL++W H + G +S +EF Sbjct: 748 QAVVTARADIEKDLRAAVGRQSFFLAYQPQVD-ASGQVIGAEALLRWQHQQRGTVSPAEF 806 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I + L++LE W + + +N++++ + + A+ Sbjct: 807 IPVAEETGLILPLGLWVLETACAQAALWAARPGRERFTVSVNVSARQFRQANFVDQVLAV 866 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++++ P +KL +ES+++ N + + L+ G+ +LDDFGT S LSYL +P Sbjct: 867 LARSGAHPRNLKLELTESMLLDNVQDIIAKMSALKARGVGFSLDDFGTGYSSLSYLKQLP 926 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + I R+II +A+ + ++IA+ + L GC Sbjct: 927 LDQLKIDQSFVRDLLTDPNDEVIARTIIALARTLGLSVIAEGVESVEQQDALAAQGCLAY 986 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + PL L+ Sbjct: 987 QGYLFSRPLALADFEAFLRR 1006 Score = 101 bits (251), Expect = 8e-19, Method: Composition-based stats. Identities = 47/377 (12%), Positives = 106/377 (28%), Gaps = 28/377 (7%) Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239 + T + G+ + + + + + + VL + G Sbjct: 87 SWVAVTGVSTFFGGLRALLVVAYPLLILMGGWLLGLR--AAAVLASLTVLAIVGFVVGDA 144 Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL--------HWNRWHAKVGYI------ 285 + P + + A S ++ + + R + + Sbjct: 145 WAWLPTPPPTPAVMHGLVQGACSLVALLLIVFLVRSYQSRIDDVRRLASDLAQRTAELQA 204 Query: 286 -------TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + + ++ + ++A RI + + +R Sbjct: 205 READLNRAQAVANVGSWVYDLVSGRIDMSAETCRILGLPTGTVGSLDAFMARVHPDDRDT 264 Query: 339 LLIPAWILIFIWFIGLWMA-ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397 L A + + + I Q A V L Q + A Sbjct: 265 LQQAAAAALRGEPFDNELRLVFGETTRWITQRAEVEFDEEGKPLRSLGTTQDITARKQLE 324 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + E L G+ + D+ R+ +P G + G +H Sbjct: 325 ASLREQKEFFRLISESIGEHIAVLDLQGQRLYNSPSYGQFFGDTRD-LRGSDS--FADVH 381 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DR+ + + RG+ + E+R+ D M R + + G+ R + ++ Sbjct: 382 PEDRERVKRVFRQTTETGRGQ-EIEYRLVRNDGSVRHMASAGRVLGDRQGEAARVVVVSR 440 Query: 518 DITEQKKSLEGILCNAF 534 D+TE+K++ + A Sbjct: 441 DVTERKQAEQWERIAAT 457 >gi|257093702|ref|YP_003167343.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046226|gb|ACV35414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1542 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 155/566 (27%), Positives = 267/566 (47%), Gaps = 17/566 (3%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 E+ LA + + V D + +T +T+ G + G R Sbjct: 975 ARKRAEEQLRLAALVFDRASEGVMVTDTEQRILTINDSFSTLTGYTRQEVVGKTPRLLRS 1034 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 R+ + + D R G Q E R + + + + I + + NG ++ Y+G Sbjct: 1035 DRMP--REFYAEMWDKV--TRLGVWQGEIWNRRKNGEPYLEWLSINTVKDKNGKVVNYVG 1090 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + +DIT+ ++S + I A D LTG+PNR F DRL L + V+ ID+D Sbjct: 1091 MFSDITKVRESQQRIEYLATHDELTGLPNRALFNDRLNLALAHAERS-RESVGVVFIDLD 1149 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K +ND LG GD +L R+ E ++ D +ARL G+ F ++L++ + + A Sbjct: 1150 NFKVVNDTLGHETGDKLLKQAAMRLLECVRAEDTVARLGGDEFVVLLVN-ADRQQATLTA 1208 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ + E E ++ASIG + + ++ +++NA+ AMY AK G N Sbjct: 1209 ERLLTGLSTSYHFGEHECFISASIGLSMFPEDASDANSLMRNADSAMYRAKDHGKNGFRF 1268 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F S S R+ ++ L A+EN EL++ Y P +RL + +VG EAL++W + I Sbjct: 1269 FSADLASQASKRLALETGLRRAIENGELFVHYQPQVRLECDTVVGAEALVRWRY-NGEVI 1327 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ IAE+ +I AI+ ++L R II W PP+ I +NI+++ + + Sbjct: 1328 DPVVFIPIAEQSHLIFAIDDWVLGEACRQIIEWDRAGL-PPLRISVNISARHFRKDGMAA 1386 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++S SP R+ + +E V+M + +R++ +L L + G+ +++DDFGT S LSY Sbjct: 1387 DLMDIVSAHGVSPQRLCIEITEGVLM-DVDRAQRMLAELVESGLRISIDDFGTGFSSLSY 1445 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +K S + G AI II +A+ + +++ + I EL Sbjct: 1446 LKRFPIHELKIARSFVDGISTDADDRAIASVIISLARQLGMSVVGEGIERTGQHAELEAF 1505 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GC Q A PL ++ + R Sbjct: 1506 GCHRGQGFLYAQPLAPDAFADWVLAR 1531 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 7/168 (4%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 I P L + +++ F + ++ R + S ++ D Sbjct: 828 IAPLLRDTQRIAGVILLFADNTSLYEVERSARETQV---RLQAVMNNSVSLMAVKDAPGR 884 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 P G A+G + G L D FR + R+G ++ E + Sbjct: 885 YQFANPKFEQTFGFATGEVIGKTD--LQLFPEAVSDLFRESELEAIRLRKG-IEREESLP 941 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 A + H++++R P+ + +G I A DIT +K++ E + A Sbjct: 942 LAAGERHFLVVRF-PLFDDDGAITGLCFQATDITARKRAEEQLRLAAL 988 >gi|144899939|emb|CAM76803.1| protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum gryphiswaldense MSR-1] Length = 913 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 147/571 (25%), Positives = 265/571 (46%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + S AV S V P I G A+ ++ G L + Sbjct: 342 QKKAETSLNLLSQAVEQSPVAVAVVTDQGLVEYVNPAHQRITGHAADTVIGHP---LAGL 398 Query: 457 HI-NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + R F + + R E V A D + W I P++ +I ++ + Sbjct: 399 YPGQSRAWFGEMWQALC--RGADWGGEVPVVAEDGKLRWQQIFASPVAPQGHEITHHLVV 456 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D++ +K+ IL A D LT +PNR LDRLT + + D R ++ +D+D Sbjct: 457 VEDVSLRKEQDRKILHQALYDGLTDLPNRAMALDRLTVATEEA-RDAGTRVGLLFVDLDD 515 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG GD++L+ + R+ + + ++AR G+ F +IL + + A Sbjct: 516 FKGINDSLGHEYGDELLILASERLCQAVGEGGMVARFGGDEFLVILP-LVSPEQAEWAAD 574 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ P + R++ TASIG A + T +L+NA++AMY +K G N F Sbjct: 575 RIVQAFVEPFTISRRDLITTASIGVALYPEDGRTPQTLLRNADIAMYQSKLAGRNRYCCF 634 Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 R++ R+ ++ +L AV +L+L + P++ + + G+EAL++W++P+ G++ Sbjct: 635 TARMNDEAEARLRLESELRRAVGTEQLFLHFQPLVHVESGRVAGIEALLRWNNPELGSVP 694 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ AE +I I +L + + + W Q P + + +N++ + D + Sbjct: 695 PDRFIPQAETCGLIVPIGRDVLRQACQTALPWL-QGGHPDLLLCVNVSPRQFQDGAFLDD 753 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ ++ +T + ++L +E +++ LL L +G+ L +DDFGT S LSYL Sbjct: 754 VRTILRETGFPAGNLELEITEGLLLKERGDIDGLLQGLHDMGVHLAIDDFGTGYSSLSYL 813 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PF T+K + S M G +R ++ +I+ MA + +IA+ + + L +G Sbjct: 814 ERYPFHTLKIDRSFMIGMLERHERKVLVDTIVAMATGLGLKVIAEGVETAEQLARLRAIG 873 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 CD Q + P+ I LL RF L + Sbjct: 874 CDLAQGYLFSRPVPAEQIFALLDNRFGLDER 904 Score = 72.7 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 4/121 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D V + +P++ +LG + + G + + + +DR Sbjct: 112 LDIILGRLPDAVISVGGDGRILWVSPNVRRLLGYDATELVGHDVSVIYAV-ASDRKVV-- 168 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 LD + ++ EF+ RA D W++ + + G G+ DI+E + Sbjct: 169 -LDLVRAGQGEAVRVEFQARAKDGSDVWVVAYGCAVFDDQGRFNGVRGVLRDISENHRMR 227 Query: 527 E 527 + Sbjct: 228 K 228 Score = 55.0 bits (131), Expect = 7e-05, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 10/142 (7%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 V++ + + + +R + + + + + G Sbjct: 215 GVLRDISENHRMRKTLEDSEDRFRRLSDVTNEAI-CIHFQGRILDCNRAFHDLFGYERAD 273 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + W IH +D R ++ YE R D M I + Sbjct: 274 FD-TLTAW-NVIHTDDLPLAREMVRIQYQKP-----YEVRGVRKDGSVFPMEIHSKESWM 326 Query: 505 SNGDILRYIGIANDITEQKKSL 526 GD+ + D+TEQKK+ Sbjct: 327 --GDVAVRVTCIRDLTEQKKAE 346 >gi|229170009|ref|ZP_04297701.1| Sensory box/GGDEF [Bacillus cereus AH621] gi|228613434|gb|EEK70567.1| Sensory box/GGDEF [Bacillus cereus AH621] Length = 885 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 182/857 (21%), Positives = 347/857 (40%), Gaps = 34/857 (3%) Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIY 174 S F L + R+ D F ++P F + L I Sbjct: 41 SRLFWITLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSD--FFYL------LFLIS 89 Query: 175 LWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLG 230 Y+ L + I + A F +Y++ ++ I T + +V L Sbjct: 90 FAFAFLYEIIYGRDLLEQLFTICDICIIVTAQFTLSYYLLIERTIHIFTTSYIDMFVQLT 149 Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITF 287 Y D FL +NL L + L S+LI++ Y + + + T Sbjct: 150 YPMADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAYIKYFQPEHSMFTV 209 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 + + + +L + + + + ++ I + Sbjct: 210 APLYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISVVMLIVFILVENVF 269 Query: 348 F-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFS 402 I IGL + L + L+L + Q L T + ++ Sbjct: 270 APIVVIGLMVTFAFVLIRHTLVRRQNKILLLAQMQFSLELEKQIELRTEDLVEQKNELYH 329 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + + D ++ D+ + + T+LG + + + ++ D + Sbjct: 330 NQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLE 387 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 T + + E R + +++ + P+ I + DITE Sbjct: 388 EIITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGAYLMIKDITES 444 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K+ E I A+ D LT + NR+SF +L + + VM +D+D++K IND Sbjct: 445 KQQQEQINFLAYHDTLTELANRRSFHQQLEKAIARAKISKRP-FAVMFLDLDRFKVINDT 503 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD +L+++ +R+ + LARL+G+ F I++ + A + S+ Sbjct: 504 LGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRDVQKIADMIVLSMN 563 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P + + + ++ SIG A + + +L++A++AMY K++G N + ++ Sbjct: 564 EPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGKNGSSLYTKELYKK 623 Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 I++DL LA+ N E +LVY P + + +I+G EALI+W HP G+IS EF+ I Sbjct: 624 MERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHPLLGDISPCEFIPI 683 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 EE + + ++L R + W+ + + +N+++K+ N+L E + ++ Sbjct: 684 VEETPQVIPLGHWVLRESCRQLKIWQS-FGYTNLKMSVNLSAKEFQQNQLIENISQILKD 742 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P + L +E + M + + + L +L++ GI ++DDFGT S L+YL P DT Sbjct: 743 VKIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDT 802 Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + AI+ +I+ +A + +++A+ I E +K L + C Y+Q Sbjct: 803 LKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGY 862 Query: 939 HVASPLGFNSILKLLKE 955 + + PL +K L++ Sbjct: 863 YFSKPLTSKQFIKFLQK 879 >gi|91794728|ref|YP_564379.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91716730|gb|ABE56656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella denitrificans OS217] Length = 1479 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 136/575 (23%), Positives = 268/575 (46%), Gaps = 13/575 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + + S+ + A + + + D + + I Sbjct: 909 IARVAGIYSDISVQRELESEINLLAQAFENTTEGMLILDANETVIISNLAANLIFTTKPN 968 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + L + +D + E + D + I I M Sbjct: 969 ELIGLSLSELVR-----KSEINLSVDGLL-GNGTSWNGERELLRRDKRTFPAWINISMMK 1022 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 N I Y+ + +DI+E+K++ + A D LTG+ NR F RLT I+ + +D Sbjct: 1023 AENSLIKHYVLVFSDISERKQNELNLRYLANNDVLTGLANRAMFTRRLTQIISFATLNDE 1082 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ +D+D++K +ND G ++GD +LV RR+ L ++ R G+ F I+L Sbjct: 1083 -KLALLFLDLDRFKHVNDSYGHSMGDALLVEAARRLQSCLTENHLVCRFGGDEFVILLRD 1141 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + I A ++ K+I P L RE ++ SIG + W I ++KNA+LAMYH Sbjct: 1142 AGDIDGINHVADSLLKTIEQPFKLEGREFFISTSIGISVWPDDSIDPETLIKNADLAMYH 1201 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEA 740 AK G + + + + ++ DL A+E E L Y P + + + +VG+EA Sbjct: 1202 AKEEGRGNFQYYSSERNAEALYHLRLEADLRKAIERDEFTLNYQPQVDILHQDRVVGVEA 1261 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G I F+ +AE +I I+ ++ ++ +D W + + +N+ Sbjct: 1262 LIRWHHPEDGLIRPDIFIKVAESCGLIVDIDRWVFKQACQDAARWHTEF-EQSYKLSVNV 1320 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + +G++ ++++T S + + +E V+M ++ L +L+ +G+ +++ Sbjct: 1321 SAVSFRQADFIDGLKDILTETGMPASLLTVEITEGVLMKELHVAKAHLRKLKALGVKVSI 1380 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL + +++K + S + + AI+ SI+ +A+N++ ++A+ + Sbjct: 1381 DDFGTGYSSLAYLRHFEVNSLKIDRSFLIDIGVNKADQAIVSSIVELARNLKLEVVAEGV 1440 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++++ GC IQ + A P+ N + L Sbjct: 1441 ESHEQLEQVFSRGCYLIQGYYFAKPMARNELEIYL 1475 Score = 96.2 bits (238), Expect = 3e-17, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 8/177 (4%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 + +L + I +L + + V +Q + +R A+ GS + Sbjct: 763 WWQSQWFKWLVSLCIFIAFISML--WYRHRQVERFKKINQALVDSDDRLRQALRGSDSDL 820 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W+W + + +LG + LP +H NDRD R + + + Sbjct: 821 WEWRSDTQMIYLDNNAG-LLG--DADFVHCPLSELP-VHENDRDRVRGEWIALLEDKGEL 876 Query: 479 LQYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + E+R D W+ +R R + G I R GI +DI+ Q++ I A Sbjct: 877 FESEYRYYRPDGSCGWLRVRGRAVDYQPGTGAIARVAGIYSDISVQRELESEINLLA 933 >gi|121608322|ref|YP_996129.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Verminephrobacter eiseniae EF01-2] gi|121552962|gb|ABM57111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Verminephrobacter eiseniae EF01-2] Length = 836 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 141/580 (24%), Positives = 257/580 (44%), Gaps = 14/580 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + R S D W+ D D+ ++ G+ Sbjct: 252 VRTFADVSDYLRVENQLRDSEARFRSLSDLSSDWYWEHDAQGRFTQLAGDL-SVNGMPLS 310 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G R + + N + + + ++ E + R AD HW+ + P+ Sbjct: 311 AVLGRTRWEIGAL--NMTEADWAAHRAVLAAQQPFRDLELQRRRADGSMHWISVSGVPVQ 368 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++G Y G+ DIT +K++ I AF D LTG+PNR+ LDRL ++ T N Sbjct: 369 GADGTPRGYRGVGRDITGRKQAEGQIERLAFYDALTGLPNRRLLLDRLQHA-TVAVTRSN 427 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ ID+D +K +ND LG GD +L +R+ ++ D +AR G+ F ++L Sbjct: 428 TQGALLFIDLDNFKSLNDTLGHDAGDHLLQQAAQRLKACVREVDTVARFGGDEFVVLLAG 487 Query: 624 ENNSLKIADFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 + + A + S+ P L T SIG A + E+LK A+ Sbjct: 488 LSAAAAQASAEAAQVAKHIAASLGQPYALGGAVHHSTPSIGIALFGPQACRVDELLKQAD 547 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 LAMY AK G N F + ++ DL ++ EL L Y P++ + Sbjct: 548 LAMYQAKAAGRNTQRFFDPEMQAAASHRSALEADLRRGLQQRELVLHYQPMVDGQ-GRLQ 606 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W+HP+ G + +EF +AE+ +I + ++LE +++W A + Sbjct: 607 GAEALVRWNHPQRGLMPPAEFTPLAEQTGLILPLGQWVLETACAQLVAWSRSALTRAFSL 666 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ + + + + A + + +P R+ + +ES+++ + + + +LR G+ Sbjct: 667 SVNVSVRQFRQADFVQQLLATLEASGANPERLTIELTESLLLNDVQDIIARMQQLRCHGL 726 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 LDDFGT S LS L +P D +K + S + AI+RSI+ +A+++ ++ Sbjct: 727 GFALDDFGTGYSSLSQLKRLPLDQIKIDRSFVRDLPADAGDGAIVRSILALAQSLGLAVV 786 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + ++ L GC Q H P+ ++ + Sbjct: 787 AEGVETRAQLEFLQHHGCQTFQGYHFGRPMPPEALAHRFQ 826 >gi|88811676|ref|ZP_01126930.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator [Nitrococcus mobilis Nb-231] gi|88791067|gb|EAR22180.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator [Nitrococcus mobilis Nb-231] Length = 818 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 137/559 (24%), Positives = 259/559 (46%), Gaps = 20/559 (3%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS------MHGPIRNWLPYIHIN 459 R + + + D V D+ + ++LGLA + W Sbjct: 260 RLTATLEATTDFVAIADLQGHLLYANAARRSVLGLAPEDKVGICTLSDGHTEWAS----- 314 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + E + D + I +G++ + IA +I Sbjct: 315 -AKLMSKAIPTAMQE--DTWSGELALIDRDGLEIPVSEVIIAHRGPDGEVQFFSAIARNI 371 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 +E+K+ E + A D LT +PNR LDR+ L + ++ R V+ +D+D++K+I Sbjct: 372 SERKRLEEELAYRASHDALTCLPNRSLLLDRMQQALAYARRYNH-RVGVLFVDLDRFKRI 430 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG GD +L ++ RI + ++ D ++R G+ F +I +S +A +RK Sbjct: 431 NDTLGHHAGDTILRTVAERICQGVRRSDTVSRHGGDEFVVIAAQVFDSNDLASIVSKIRK 490 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +++ PI + R++ +T SIG A + + +LKNA+ AMY AK G N + + Sbjct: 491 TVSEPIKVKNRQVVLTCSIGIALYPFDGEDTDTLLKNADTAMYQAKENGRNDFQYYTKEM 550 Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + + ++E+L AV+ E L Y P + L + LEALI+W HP+ G ++ F Sbjct: 551 NAQSHEMLNLEEELRRAVKAGEFVLHYQPQVDLQTGALSRLEALIRWQHPERGMLAPGTF 610 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + + EE +I+ + +++ R W++ PP+ + +N++ + + + E ++ + Sbjct: 611 IPVLEETGLIEPVGEWVVREAVRQCAVWKEMEL-PPVTVAVNLSVRQFANLNIAEAIERI 669 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +++ P+ ++L +ESV+M + L L + G+ + +DDFGT L YL +P Sbjct: 670 VTEAGIPPACLELEITESVLMADAFDGAEALRALSQRGLRVAVDDFGTGYCALHYLRRLP 729 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +T+K + S ++ AI+ +II + ++ ++A+ + L R+GCD Sbjct: 730 VNTLKVDHSFVSDLEGDPTTAAIVSAIITLGHDLGCKVVAEGVETLAQCNHLHRLGCDLA 789 Query: 936 QDSHVASPLGFNSILKLLK 954 Q P I LL+ Sbjct: 790 QGYLYYRPCPPEEIEPLLQ 808 Score = 71.1 bits (173), Expect = 9e-10, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 47/163 (28%), Gaps = 10/163 (6%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 ++ ++ S A+ + + V+ + P + G Sbjct: 112 LVPAVRRELREAKLRRERVRAQKQLQKLSRAIEQTAECVFITNPDGIIEYVNPAFERLTG 171 Query: 440 LASGS-MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 S M R H +R + + G + R + + Sbjct: 172 FTSEEAMRNSPRILRSGQHSA--SFYRDMWRTLKDG--GVFRGMVINRRKNGALFYEEKV 227 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-----AFQD 536 I P+ +SNG I ++ +I+++ ++ A D Sbjct: 228 ITPIKDSNGVITHFVSTGQNISDRMEAETIRKRLTATLEATTD 270 >gi|323487729|ref|ZP_08092987.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Planococcus donghaensis MPA1U2] gi|323398463|gb|EGA91251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Planococcus donghaensis MPA1U2] Length = 776 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 162/748 (21%), Positives = 333/748 (44%), Gaps = 35/748 (4%) Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273 + + + L ++++ L + + +LII Sbjct: 34 GEARIFNQIGIVLSYLAWLALGIFSYVNLELYDPKIAYLIIFLLYPIFTINLIIL----- 88 Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 + A + + + I + + F + + Sbjct: 89 ----HSHRFKKYYQPMTAISNGVAGVGILFIGHIILKNDILAICGITVVSLFSFFILRQR 144 Query: 334 YERAVLLIPAWILI-FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ +V+ + ++ I +G L ++ + G ++ T +Q+ L Sbjct: 145 FKISVMTTLIYAIVNQILLVGTSEVAMFSLFMWMLLITCIVGGNILERANRKTFLQNKLR 204 Query: 393 TGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 ++ + D ++ ++ IV + D + T P + G + Sbjct: 205 RIAEAENLDKDKFLTNMFNLVSVPIIVAEEDHQ--ILETNPASNKLFGREQQYL------ 256 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + ++R +L F+ R +E + + ++ + + I Sbjct: 257 -IDLLAPSERRRMT-LLKGFLK-RTPIHNFEAELVDQEGHIISTLVNVNFVEREGKKIS- 312 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 I DI+++KK+ E A+ D LTG+PNR F ++L + ++L V+ I Sbjct: 313 -ICAIQDISDRKKAEEESTYLAYHDTLTGLPNRLQFTEKLNSFVELEQE-----IAVLFI 366 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+DK+K +ND G VGD +L + +R+ + DI++R+ G+ F IIL+ +++ Sbjct: 367 DLDKFKMVNDTRGHTVGDKLLQQIAKRLISCVSRGDIVSRIGGDEFTIILLGRT-KFEVS 425 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + + I PI + + E+ + +SIG + + S ++KN+++AMY++K GGN+ Sbjct: 426 RIVERILEEIRKPIFIDQHELYLRSSIGISFYPSDGENIESLIKNSDIAMYNSKVLGGNN 485 Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F S S RV ++E+L A++N+EL + Y P I + G EALI+W HP+W Sbjct: 486 YKFFTNSMNSSFEERVNLEENLHTALDNNELVMYYQPQIDPKTGCMYGAEALIRWIHPEW 545 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + F+ IAEE +I I ++L + + W DQ P I +N++ K ++++ Sbjct: 546 GIVPPDRFIPIAEETGLIIPIGEWVLRTACKQAVEWNDQYGR-PFHIAVNLSVKQFVNSD 604 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + ++ ++ +T +P+ ++L +ESV + N E ++ +L+K+G+ +++DDFGT S Sbjct: 605 IVDTVERVLEETGLNPNILELELTESVFLENTESMIAIMNKLKKLGVRISIDDFGTGYSS 664 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL +P D++K + S + ++ + +I+ +II +A+ ++ +A+ + Sbjct: 665 LSYLKDLPIDSIKIDQSFIRNLSKSKKTNSIISTIISLAQKLDLKSVAEGVETLEQYNYF 724 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 GCD Q + + P+ + I LL Sbjct: 725 KEEGCDLAQGYYFSRPVPVDQIASLLDR 752 >gi|311235119|gb|ADP87973.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris RCH1] Length = 584 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 152/540 (28%), Positives = 259/540 (47%), Gaps = 10/540 (1%) Query: 419 WDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W+ TP I G + IH +D +R + Sbjct: 44 WECWESPEGRVHFVTPACQRISGFGIDNFRAHHLFIEGLIHPDDLPAWRRH-REMLTASL 102 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + + E R+R A+ W+ + R +++ +G+ L DIT++K L + A+ D Sbjct: 103 PKAEVEIRIRTAEGGEKWLAVTSRNLTDGHGEPLGIRSSLRDITDRKMVLSQLRHQAWHD 162 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LTG+PNR LDRL L A + V+ +D+D++K +ND LG A GD VL Sbjct: 163 PLTGLPNRALCLDRLDRALGRLARGNGELCAVVFLDLDRFKLVNDTLGNAAGDRVLRETA 222 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 RR+G + D ++RL + F I++ + +R++ P ++ R + VTA Sbjct: 223 RRLGTATRSTDTVSRLGSDEFIILIEDLRGEDEARATLGRLREAQRAPFDIDGRHLRVTA 282 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLA 714 S+G + E+L+NA +AM+HAK GG+ F S D + ++ DL A Sbjct: 283 SMGVVLAR--GGNADEVLRNANIAMHHAKEHGGDAASFFHASMLEEALDLMQLEIDLHRA 340 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 +EN E +LVY PI+ ++D I G EAL++W HP+ G + F+ +AE +I + Sbjct: 341 LENDEFFLVYQPIVSVVDRRITGFEALLRWRHPERGVVGPDAFIALAEHSGLIHLLGRKA 400 Query: 775 LERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 L+ R + WR + + +N++++ L + E + + + P +KL + Sbjct: 401 LDEACRTLAKWRRVDQLFDGLTMHVNLSARQLSQTHIVEQVAEALRDSCLPPHLLKLEVT 460 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892 E+++M NP+ + +L RLR IG+ + +DDFGT S LSYL P DT+K + S ++ T Sbjct: 461 ETMLMENPDYANAVLCRLRDIGVGVCVDDFGTGYSSLSYLQRFPIDTLKVDRSFVSRMTR 520 Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + I++++I +A ++ ++A+ + E L + C Y Q A PL + Sbjct: 521 EPGQFKIVQAVIALAHSLGLEVVAEGVEDEEQRIMLLGLACRYAQGFLFAKPLAAEDVPA 580 >gi|330952247|gb|EGH52507.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 565 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 141/561 (25%), Positives = 259/561 (46%), Gaps = 16/561 (2%) Query: 398 QGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453 + D +R LA + + V D V I G + + G + Sbjct: 3 ERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPSKFK 62 Query: 454 PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 H L S G+ E R + + IR + +G + Sbjct: 63 SGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRCIKGEDGQARHF 117 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + +DIT K+S + + A D LT +PNR DR++ L + ++V+D Sbjct: 118 VAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALLVVD 176 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D ++ IND LG +GD+VL + R+ L ++RL G+ F +++ + + + A Sbjct: 177 LDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHMVHAAA 236 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 237 LAQQVINAFKAPYPIGGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKTDGREGF 296 Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + RV + +L A+E +L + Y P+ L+ I +EAL++W HP G Sbjct: 297 ALYTEELTAHAQQRVQLASELRQAIEQDQLRVFYQPVYDLVTGRICAVEALVRWQHPTRG 356 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 +S +F+ IAE+ +I I+ ++L R + +W + + +N++S+ ++ Sbjct: 357 MVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSRGDV 415 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++++T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT S L Sbjct: 416 DRRVAEVLNETGLDPAFLELEVTESAVMEDPEQAIKQLHRLRELGLSLAIDDFGTGYSSL 475 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 L +P +K + + G IAI+R++I +A ++ ++A+ I L Sbjct: 476 LRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRTVIALASSLGMRVLAEGIEHASQASFLL 535 Query: 929 RMGCDYIQDSHVASPLGFNSI 949 GC+ Q A P+ SI Sbjct: 536 SNGCELGQGYWFARPMAAQSI 556 >gi|87199053|ref|YP_496310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Novosphingobium aromaticivorans DSM 12444] gi|87134734|gb|ABD25476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Novosphingobium aromaticivorans DSM 12444] Length = 769 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 173/769 (22%), Positives = 329/769 (42%), Gaps = 45/769 (5%) Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN-LPSGELLIWRACSEIALSSSLIIF 268 + R + + L ++ + + LL+ +++ S F Sbjct: 14 WGRLRGLQYSSLARLTFARLMAHAVAALLVLQTFGGRVHPALLVGWMALLVSVLISGARF 73 Query: 269 LFMYLHWNRW-----HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 + +R I+ +A L + F A + +L Sbjct: 74 DRSLVDADRRRVSRQEMHRQTISSLFVALAWALPMLVFGPFGDAAGRMTLWTVLAMLMTG 133 Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 + + M P ++F +G+ + + A+ V+IV + Sbjct: 134 MAVTFAAM----------PMATVLFSGVVGVSAVAAFLFEGEYTAAAVSTVFVVIVSVGA 183 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILG 439 V + L G+ E SL + G D +W D R + +P A LG Sbjct: 184 VEVARTFLGARVAEAGMAEKSEVVSLLLREFEEGDADWLWQVDANRRIRSVSPRFAFALG 243 Query: 440 LASGSMHGPIR-------NWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 + G W + H + D L + R R Sbjct: 244 ADPEDLEGKPLIQVIAGPAWEDGHFHSSLHD-----LAERLKRRESFSNLLVRA-TLHGS 297 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 W + P + NG + + G+ +D+TEQ++S E I A D LTG+PNR + L Sbjct: 298 HRWWELSASPKVDDNGTFVGFRGVGSDVTEQRESAEKIAYLARYDTLTGLPNRLMLTEAL 357 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 + S ++ID+D++K +ND LG VGD +L ++ R+ ++K ++ R Sbjct: 358 GDAMGYS-EKWRSNCAFLMIDLDRFKAVNDTLGHLVGDQLLAMVSDRMTRIIKDGEVCGR 416 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F +++ +S +IA+ A A+ +++ P + + V AS+G A T Sbjct: 417 LGGDEFAVVVRDVADSQRIAELADAIIATLSQPYEVDHHMLYVGASVGSAIGPRDGATVE 476 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIR 729 +L+NA+LA+Y AK GG ++ + +R ++ L A+E SE LV+ P++ Sbjct: 477 TLLRNADLALYRAKDEGGGSHCTYEPALHAHAEERRKLEFSLRHALERSEFGLVFQPVVD 536 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 E +V EAL++W+ + G++S ++F+ +AE+ +I I ++L ++ ++W Sbjct: 537 ATSEAVVSFEALLRWNSEEHGSVSPAKFIPLAEDTRLIVPIGEWVLRMACQEAMNWP--- 593 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P + I +N++ + LLD E + ++ + P R+++ +ES+ + + +++ L Sbjct: 594 --PHVKIAVNVSGEQLLDPYFAETVVGALAASGLPPHRLEIEVTESIFVRDATVAQMTLE 651 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG---STEKRIAILRSIIPMA 906 L IG + LDDFGT S L YL + F T+K + S + G + +AI+R+++ MA Sbjct: 652 NLMGIGCGVALDDFGTGYSSLGYLRKMRFSTIKVDRSFVQGAAKDNPESLAIVRAVVAMA 711 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +++ + A+ + E +++ + R+GC IQ + P+ L + Sbjct: 712 DSLDMSTTAEGVETEAELETIRRLGCKKIQGYYFGRPMSAADARGLFSQ 760 >gi|229136118|ref|ZP_04264871.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] gi|228647277|gb|EEL03359.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] Length = 734 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 156/736 (21%), Positives = 314/736 (42%), Gaps = 20/736 (2%) Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFS 288 L ++ I L + ++L ++ + I +++ I+ + + + T + Sbjct: 4 LLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAY----IKYFQPEHSMFTVA 59 Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348 + + +L + + + + ++ I + Sbjct: 60 PLYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISVVMLIVFILVENVFA 119 Query: 349 -IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSD 403 I IGL + L ++ L+L + Q L T + ++ + Sbjct: 120 PIVVIGLMVTFAFVLIRHMLVRRQNKILLLAQMQFSLELEKQIELRTEDLVEQKNELYHN 179 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + D ++ D+ + + T+LG + + + ++ D + Sbjct: 180 QQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLEE 237 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 T + + E R + +++ + P+ I + DITE K Sbjct: 238 IITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGAYLMIKDITESK 294 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + E I A+ D LT + NR+SF +L + + VM +D+D++K IND L Sbjct: 295 QQQEQINFLAYHDTLTELANRRSFHQQLEKAIARAKISKR-PFAVMFLDLDRFKVINDTL 353 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L+++ +R+ + LARL+G+ F I++ + A + S+ Sbjct: 354 GHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRDVQKIADMIVLSMNE 413 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P + + + ++ SIG A + + +L++A++AMY K++G N + ++ Sbjct: 414 PFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGKNGSSLYTKELYKKM 473 Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I++DL LA+ N E +LVY P + + +I+G EALI+W HP G+IS EF+ I Sbjct: 474 ERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHPLLGDISPCEFIPIV 533 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE + + ++L R + W+ + + +N+++K+ N+L E + ++ Sbjct: 534 EETPQVIPLGHWVLRESCRQLKIWQS-FGYTNLKMSVNLSAKEFQQNQLIENISQILKDV 592 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P + L +E + M + + + L +L++ GI ++DDFGT S L+YL P DT+ Sbjct: 593 KIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDTL 652 Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + AI+ +I+ +A + +++A+ I E +K L + C Y+Q + Sbjct: 653 KVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGYY 712 Query: 940 VASPLGFNSILKLLKE 955 + PL +K L++ Sbjct: 713 FSKPLTSKQFIKFLQK 728 >gi|227818393|ref|YP_002822364.1| hypothetical protein NGR_b01450 [Sinorhizobium fredii NGR234] gi|227337392|gb|ACP21611.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 820 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 135/580 (23%), Positives = 258/580 (44%), Gaps = 21/580 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + ++++ + R + ++W + G + Sbjct: 237 YGTVENIDDRRKALEAAKESEARFRAIADDAPVMIWVTGEDGADDYHSRLWLETTGQTAE 296 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G WL +H DR+ RR ++ E+R++ A W+I +P Sbjct: 297 QAAGK--GWLNAVHPEDRNAVERAFYQAFE-RRKSVRMEYRLKRAGGGSAWVIDIGQPRF 353 Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556 ++G L ++GIA DITE++ + + I A D LTG+PNRQ + + D Sbjct: 354 ATDGKFLGFVGIALDITERRNAEQERLLAQKQIHHMARHDALTGLPNRQFLREEFERLSD 413 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 A R ++ +D+D +K +ND G A GD +L + R+ L+ DIL RL G+ Sbjct: 414 QIAA--GTRIAILCLDLDGFKAVNDAYGRATGDLLLRRVAERLQNCLRQSDILCRLGGDE 471 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F ++ + N++ + A + I P L + + +G A+ E++K Sbjct: 472 FVVLRVGINSNAEARLLAQQLIDVIEAPYELAGTHVDLGVIVGLAAAPKGDQPVDELIKA 531 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+ AK G + + ++ L A+ N +L + Y P++ L + Sbjct: 532 ADVALDRAKSGGRGTYVQYEPEMDAHLQAVQQMRVSLRQALANGDLEVHYQPLVDLHTGK 591 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I EAL +W HP+ +S +EF+ +AEE +I ++ ++L + + + W P + Sbjct: 592 ITTFEALARWPHPERDQVSPAEFIPVAEETGLIGSLGEWILRQACTEALKWP-----PHV 646 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ + L + ++ +T SR++L +ESV++ + + + +L +R++ Sbjct: 647 SVAVNLSPLQFRNQGLAATVGDILEETGLEASRLQLEITESVLLDDCDGNLQILKAIRRL 706 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912 G+ + +DDFGT S L YL PFD +K + S +T + R AI+R++ + +++ Sbjct: 707 GVKIAIDDFGTGFSSLGYLRTFPFDKIKVDRSFITDLPDGRESLAIVRAVAAIGRSLGIV 766 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + + + G D Q +A PL KL Sbjct: 767 TTVEGVERQRQFDVIKAEGFDEAQGYLIARPLPAEQATKL 806 Score = 91.2 bits (225), Expect = 7e-16, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 4/146 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + I + + E V + W D + P G A Sbjct: 110 VIVATILDFTERRRAESELHASEEHYRSLVELHPQVPWTADPSGQVLEIGPRWEN-TGFA 168 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G W H +D D + + L EFR+ AA+ + W R Sbjct: 169 PNEALG--EGWAKATHPDDLDPVQQAWAKSLET-GEPLDIEFRLAAAEGGYSWYRSRAAT 225 Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527 +G ILR+ G +I +++K+LE Sbjct: 226 RRAEDGSILRWYGTVENIDDRRKALE 251 Score = 38.4 bits (88), Expect = 5.5, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 5/131 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D ++G G + G IH + Sbjct: 7 FEAILNAIPVPIIVKDEQFRFSFLNEAACALVGRRPGDLIGCTDYD---IHPTAEADRIR 63 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR--YIGIANDITEQKK 524 +D V + E + + ++ R + G+ + D TE+++ Sbjct: 64 EMDKRVLCTGEEVSIEAEIVVTGGELRTLLTRTCRAELTRGNTSENVIVATILDFTERRR 123 Query: 525 SLEGILCNAFQ 535 + + + Sbjct: 124 AESELHASEEH 134 >gi|299535077|ref|ZP_07048402.1| hypothetical protein BFZC1_03603 [Lysinibacillus fusiformis ZC1] gi|298729394|gb|EFI69944.1| hypothetical protein BFZC1_03603 [Lysinibacillus fusiformis ZC1] Length = 581 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 139/551 (25%), Positives = 270/551 (49%), Gaps = 12/551 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468 + + D + V P + G + G +H + + + Sbjct: 27 IFENVSEGIMITDKYKKIVMVNPAFEFVTGYTCDDVVGKTPAVLQSGVH--ELPFYLEMW 84 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + G Q E R + + I ++N G++ Y GI D++E+K Sbjct: 85 EQIRQE--GIWQGEIWNRRKTGDVYPEWLTIVCVTNDEGEVTNYCGIFTDLSERKIVENE 142 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + D+LT + NR ++++R+ +L+ SA +++ + +D+D++K+IND LG AV Sbjct: 143 LEKRLLTDSLTDVSNRFAYIERMDNLLESTSAISHSVQHAIYFLDLDRFKQINDTLGHAV 202 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L+ + R+ +LLK DI+AR G+ F I L + N + A FA + SI P+ + Sbjct: 203 GDSILIEVANRLKKLLKNKDIIARYGGDEFVITLTNVKNVKEAAKFAEQIISSIEQPMMI 262 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRV 705 ++E+ ++ SIG + + + E++ A+ AM ++K G + + + Sbjct: 263 NDQEVFISTSIGISVYPVDSKNTEELINCADRAMTYSKKNELNGYSFYFDELQTDAQRVL 322 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ +L A+EN E L + P I + +E+I GLEAL++W+ + G +S +EF+ AE+ Sbjct: 323 LLDSELRRAIENREFELHFQPKISMENEQIQGLEALVRWNSERLGFVSPAEFITYAEDTG 382 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I ++ ++E+ +I R P + INI+S E +Q ++ + Sbjct: 383 LIIPLSELIIEKACEAVIQMRQYGWKTP--VAINISSIHFKQQNFLESIQTILERYNMPA 440 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 + ++ +E VM N + L RL+++G +++DDFGT S LSYL P D +K + Sbjct: 441 NNFEIEVTERTVMNNANETVSKLVRLKQLGFKISIDDFGTGYSSLSYLVRFPLDCLKIDR 500 Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + +++ A++ +II M+ ++ ++A+ + + L +M CD IQ + + P Sbjct: 501 SFIQHIGSLDEKQAVVDAIIQMSHRLKMKVVAEGVEQAQQVDILRKMNCDIIQGYYYSKP 560 Query: 944 LGFNSILKLLK 954 L N +++ ++ Sbjct: 561 LPLNELMEFME 571 >gi|218438272|ref|YP_002376601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] gi|218171000|gb|ACK69733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] Length = 706 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 142/576 (24%), Positives = 255/576 (44%), Gaps = 28/576 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +I + + R S + D + D + G Sbjct: 148 GIITDITERKKTEIALQQSEHRLSQIITTISDGLIVVDYEGTVKFVNAATEKLFGRTKQE 207 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + D D E +R ++ IRI ++ Sbjct: 208 LIDQKLGIPFV----DGDR-----------------TEIYIRHSNGHLIIAEIRISEITW 246 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + Y+ DIT++K + + +A D LT + NR L++L +L+ + Sbjct: 247 KQENA--YLISLRDITDRKYITDQLQYHATHDPLTDLFNRNFLLEKLQNLLEKNKNQSGK 304 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 ++ +D+D +K +ND LG GD +L+ +T+R+ L LAR G+ F I+L + Sbjct: 305 SFAILFLDLDDFKVVNDSLGHLAGDQLLIMITKRLQNSLGQNHTLARFGGDEFTILLENI 364 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A + ++ P NL ++I + SIG A + E+L++A++AMY + Sbjct: 365 KETQDAIIAAQKIHSNLTYPYNLNGQQIFINTSIGIALSSPDYTHPYEILRDADIAMYQS 424 Query: 685 KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +G F R+ ++ +L A+E E Y PI L +++G EALI Sbjct: 425 KKQGKGACTLFNQQMHEQAVKRLQMEIELRQAIEQQEFIAHYQPIFSLTTGKLIGFEALI 484 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIA 801 +W H + G IS +EF+ IAEE +I + ++L + W++Q + + I +N++ Sbjct: 485 RWQHSQKGLISPAEFIPIAEETGLIVPMGKWILLEACTQLKQWQEQYDHEHILQISVNLS 544 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 SK L D L + + +++ T +P +K+ +ES++M N + + +L +L++ L LD Sbjct: 545 SKQLRDPYLVQEIDKILTHTEINPQNLKIEITESLLMENFDTAMNILLQLQERNTQLCLD 604 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P D +K + S + + I+R+II +A ++ +IA+ I Sbjct: 605 DFGTGYSSLSYLHRFPVDILKIDRSFVMQMHSGNNNLEIIRTIITLAHSLNMRVIAEGIE 664 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E + +L + C+ Q + P+ L+KE Sbjct: 665 TESQLSQLKSLNCEQGQGYLFSKPVPQEVAESLIKE 700 Score = 98.9 bits (245), Expect = 4e-18, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 3/153 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442 ++ + ++ GI + + DIVW + + I G++ Sbjct: 18 LSISEDTISLQKIENGIKQSQAQLKSILDSLKDIVWSVSLPSFQYIYLNKTAEDIYGISI 77 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 WL +H DR N + L E+R+ D Q W+ RI+ + Sbjct: 78 SEFFKNSNLWLEMVHPEDRSNIKQ-LARNWDQSDINKDIEYRIIRPDGQIRWLHNRIQVI 136 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 N +R GI DITE+KK+ E L + Sbjct: 137 YNEQKKPVRLDGIITDITERKKT-EIALQQSEH 168 >gi|17549376|ref|NP_522716.1| hypothetical protein RS05432 [Ralstonia solanacearum GMI1000] gi|17431629|emb|CAD18306.1| probable signal transduction protein eal-ggdef domains [Ralstonia solanacearum GMI1000] Length = 915 Score = 526 bits (1354), Expect = e-146, Method: Composition-based stats. Identities = 144/580 (24%), Positives = 269/580 (46%), Gaps = 11/580 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + +G+ ER LAV + V + + IL + G + G Sbjct: 329 AIQKDATERGLAESEERYRLAVSHLNEGVLIQTLDGVVLAANASAERILRVRPGQLVGRN 388 Query: 450 R--NWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNS 505 R + + +D +L S + + G L + + + W + I P+ Sbjct: 389 RFDMMQRVVDEHGKDVALDVLPSKLVRQSGEAILGRIYGLLLKTGELIWARMNIIPIRRH 448 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + DIT+ K++ + + A D LTG+ NR F+ L + ++ + D++ Sbjct: 449 GDAAPSSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERA-RDESR 507 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + +D+D++K +ND G A GD +L S R+ + + D++ARL G+ F I++ Sbjct: 508 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 567 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 +IA A + ++ P + + + SIG A + I+ S++L++A+ AMY A Sbjct: 568 VEGKRIAQLAERLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGSDLLRSADAAMYRA 627 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + + + ++ L A +NSEL LVY P L IVG EAL+ Sbjct: 628 KQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEALL 687 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+ K G +S +EF+ +AEE +I I ++L R + W + +N+++ Sbjct: 688 RWNSVKLGAVSPAEFIPVAEETGLIVPIGEWVLRRACEQAVEWYQALGY-DFRMAVNLSA 746 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ ++ +++T P+ +++ +ES++MG + R + L GI +++DD Sbjct: 747 RQFQTGDVVPTIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 806 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P VK + S + G +A+ +I+ MA+ + T+ A+ + Sbjct: 807 FGTGYSSLSYLQRFPISNVKIDRSFILGIPGDPDSVALTEAIVAMARALGMTVTAEGVED 866 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++ L + GC IQ ++ P+ +LL+ +V Sbjct: 867 ADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLAVV 906 >gi|117919912|ref|YP_869104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] gi|117612244|gb|ABK47698.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] Length = 1433 Score = 526 bits (1354), Expect = e-146, Method: Composition-based stats. Identities = 130/561 (23%), Positives = 259/561 (46%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 873 QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRTDFIGNLLTF--DLYP 930 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +F + + + + GR E DN M + I + + G++ Y+G+ +D Sbjct: 931 E---SFSNQIRTMLKQQ-GRWASEVEASRGDNSHFHMELTIDAIYDELGELSHYVGVFSD 986 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L ++ + + +MV+D+D +K+ Sbjct: 987 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLV-----NKEITHALMVLDLDNFKR 1041 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L ++ RI +L + RL G+ F I+L ++ A A + Sbjct: 1042 INDSLGHQIGDQLLKLVSIRIKSILPKNTSIYRLGGDEFAIVLDKTSDISASAAIAGRVI 1101 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 ++ + ++ + SIG + + + +L+ A++AMYHAK GGN + + Sbjct: 1102 EAFKTMFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1161 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + ++ + Y P + L + G+EAL++ +HP G I ++ Sbjct: 1162 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEALVRLNHPTRGLIPPND 1221 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ +L + +++ Sbjct: 1222 FIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLFKG-RVAVNLSSRQFALPDLQQRIES 1280 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T S ++L +E V+ PE + ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1281 ILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1340 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1341 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1400 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + +LL++ Sbjct: 1401 IQGYIFSKAINEIEFTQLLQD 1421 Score = 116 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 2/153 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 +I++L V + +L + I ER L++ GSGD +WDWDI + + Sbjct: 726 IILMLFTLFVFKAILRKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 785 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L + IH +++ R L+ + +RV+ D+ + W++ Sbjct: 786 -LEFPRDGHRSGNSDEESNIHPMEQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWIL 844 Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 R + + + + LR G +I++ K+ E Sbjct: 845 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 877 >gi|297539482|ref|YP_003675251.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297258829|gb|ADI30674.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylotenera sp. 301] Length = 1169 Score = 526 bits (1354), Expect = e-146, Method: Composition-based stats. Identities = 155/589 (26%), Positives = 255/589 (43%), Gaps = 17/589 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSD--GERQSLAV---LGSGDIVWDWDIVRDRVTTTP 432 + L+ A F + + E +A S + + D + P Sbjct: 586 AIALLEEMSKDISFALDNFDREMQRKAGEESLRIAASVYDTSSEGILITDANNSIIAINP 645 Query: 433 DIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 I G + G L H D F+ + G+ Q + R +++ Sbjct: 646 AFTKITGYNLDEVIGRNPRMLSSGRH--DATFFKKMWHEI--NTTGQWQGDIWDRRKNDE 701 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + I + N +G + R I + DIT++ ++ + I A D LTG+PNRQ F DRL Sbjct: 702 IYPKRLMINTVYNEDGAVQRRIAMFTDITQKTEAEQLIWKQANFDFLTGLPNRQMFHDRL 761 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 + + + NL+ ++ ID+D++K+IND G VGD +L R+ + ++ D L+R Sbjct: 762 NQEIKKTNRN-NLQLALLFIDLDRFKEINDNFGHDVGDAMLKEAAIRLNKCVRETDTLSR 820 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F +IL N+ I + + L + + ++AS+G A + T+ Sbjct: 821 LGGDEFTVILGQLNDLSVIERAVQDILNKMTEAFYLGDEVVYISASVGIALYPDDASTNE 880 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIR 729 +L +A+ AMY AK G N F + + R+ + +L A E +L L Y PII Sbjct: 881 TLLTSADQAMYAAKQLGRNRYHYFTQAMQKSTQKRMRLTNELRGAQEAGQLRLYYQPIIE 940 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L + I EALI+W HP G IS +EF+ IAEE +I +I ++ + WR Sbjct: 941 LANNSIHKAEALIRWQHPTRGQISPAEFIPIAEETGLINSIGEWVFHEAVKQASHWRATY 1000 Query: 790 NMPPIFILINIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + I IN + D+ L + + S I + +E ++M + L Sbjct: 1001 HSE-FQISINKSPVQFRDDTLKYAAWPDQLKEIGLSGQSIVVEITEGMLMDASDLITSKL 1059 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMA 906 R G+ + LDDFGT S LSYL D +K + S + +A+ +II MA Sbjct: 1060 LAFRDAGVQVALDDFGTGYSSLSYLKKFDIDYLKIDQSFTRNLSPTSADMALCEAIIVMA 1119 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +IA+ + L CDY Q + P+ + +LL E Sbjct: 1120 HKLGIKVIAEGVETIEQRDLLIAADCDYAQGYLFSRPVPPDEFERLLTE 1168 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 54/335 (16%), Positives = 102/335 (30%), Gaps = 26/335 (7%) Query: 214 RSSMLIPTFAMAWVVL-GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII-FLFM 271 R + + + V+ I + L+ +V + + L L+ + + Sbjct: 118 RDFLWLSVVGILGSVVSAAIGVSTLVLNGMVPKSAAWHNFFNWWQGDMLGILLVTPLILV 177 Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 + K IT + I F + I IT ++ Sbjct: 178 WRQVPYDWIKRERITEAIICFGLSFFAGQVIFIGWFYGIFGITARGYWVFLFVTWAAVRF 237 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAIT------KRLDNDIIQPALVGGLVLIVILI--- 382 + ++L+ I + + + T L+ + AL +LI ++I Sbjct: 238 GRHGALLVLVMTAIQMLLGMVLAVGGATNNQVPVGLLNFWLYMLALTIVGLLIALVIDRV 297 Query: 383 ---GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 ++Q SQ + + L D + I + G Sbjct: 298 KSTESLLLQKNTLFNKISQRVPGVIYQFRL----YPDG------RSCFPFASEAIQEMFG 347 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 ++ IHI D D + QYEFRV + W + Sbjct: 348 ISPLQAKDDAAVAFSNIHIEDYDGVIVSMQQSARTLL-LWQYEFRVVLPNQGVRWRLGES 406 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +P +G IL + G DITE+K++ + I + Sbjct: 407 QPEKMEDGSIL-WHGFITDITERKQADDRIKRLSM 440 >gi|330957200|gb|EGH57460.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 639 Score = 526 bits (1354), Expect = e-146, Method: Composition-based stats. Identities = 151/630 (23%), Positives = 281/630 (44%), Gaps = 15/630 (2%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ LL W + + + +++ RL L+ V++ Sbjct: 7 GALRTAVLYGLLSILWFVTGDYLLSVFVEDPARLAFGQQMIGYSWALLSAVMIFIVRDRL 66 Query: 389 HVLATGYFSQGIFSDG-ERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + G + + +R LA + + V D V I G + Sbjct: 67 KGIVGGEATFARQQEDYDRLLLAAVVFDSTREGVLVSDADGRIVHVNRAFVDITGYQAEE 126 Query: 445 MHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + H + +R + S + G+ E R + + IR + Sbjct: 127 VLGFNPSKFKSGRH--GPEFYRQMYHSLLS--AGQWSGEIWNRRKSGEIYPQWQTIRSIK 182 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +G Y+ + +DIT K+S + + A D LT +PNR DR++ L + Sbjct: 183 GDDGRARHYVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSK 241 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++++D+D ++ IND LG +GD+VL + R+ L ++RL G+ F +++ + Sbjct: 242 RGCALLLVDLDNFRNINDSLGHNIGDEVLKAAAERLKVLSGSDTTVSRLGGDEFALLVKN 301 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + A A + + P + ++ VTASIG + + +T+ ++L+NA+ A++ Sbjct: 302 CTQMVHAAALAQQVINAFKPPYAIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFK 361 Query: 684 AKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK+ G + + RV + +L A++ EL + Y P+ L I EAL Sbjct: 362 AKNDGREGFALYTEELTAQAQQRVQLASELRQAIKQEELRVFYQPVYDLNTGRICAAEAL 421 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP G +S EF+ IAE+ +I I+ ++L R + +W +P + +N++ Sbjct: 422 VRWQHPTRGMVSPGEFIPIAEQNGLIVDIDAWVLNTACRQMQTWLAA-GVPIASVAVNVS 480 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 S+ +L + ++S+T P ++L +ES VM +PE++ L RLR++G+SL +D Sbjct: 481 SRLFSRGDLDRQVAQVLSETGLDPVFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAID 540 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L L +P +K + + G + IAI+R++I +A ++ ++A+ I Sbjct: 541 DFGTGYSSLLRLKSMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALASSLGMHVLAEGIE 600 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 L GC Q A P+ +I Sbjct: 601 HASQASFLLSNGCQLGQGYWFARPMAAQAI 630 >gi|91204587|emb|CAJ70815.1| similar to ScrC (sensory box/GGDEF family protein) [Candidatus Kuenenia stuttgartiensis] Length = 736 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 153/589 (25%), Positives = 268/589 (45%), Gaps = 25/589 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 T IQ + + + V S DI+ D + I LG Sbjct: 135 TKIQREVLNIKMQRHLKKSEVLHRYIVNNSPDIICTIDHEGRVMFINTKIENFLGYKPQE 194 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQF--HWMIIRI 499 + G + + + D + + + G + E + +N F + + + Sbjct: 195 LIGKLYS--EIVSPEDVERLNVFVKEKIRRGSGNYPSDKIEVCLVPKENYFKSRYFELTL 252 Query: 500 RPMSN-------SNGDILR-----YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 P+ NG+I IA+DITE+K++ E I A D LT +PNR SF Sbjct: 253 FPVELNLLGFQPKNGNISGDKLFGVYAIAHDITERKEAKEYIHFQACHDLLTKLPNRTSF 312 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 R + + +D V+ +D+D++K IND LG AVGD +L S+T+R+ L+ D Sbjct: 313 EKRGRLAISKARQND-CIVAVLFLDLDRFKIINDSLGHAVGDQLLQSVTQRLESCLRKCD 371 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 IL+R + F ++L N A+ + + P + ++EI SIG + + Sbjct: 372 ILSRFGADEFMLLLPEINAPENARQVALKITDIMHTPFVIGDQEIFGDVSIGISFFPEHG 431 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYH 725 T ++++NAE+AMY AK RG ++ F R+ ++ DL A++N+E +VY Sbjct: 432 ETIEQLIQNAEIAMYQAKCRGKKGIQFFDKGMKTSGPHRLAMERDLRRALKNNEFEIVYQ 491 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P I + +++G EAL++W+HP+ G I SEF+ +AEE +I+ + ++L ++ W Sbjct: 492 PQITINTGKVIGFEALVRWNHPEKGKIRPSEFIPVAEETRLIEDLGEWVLHHACCEVREW 551 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + + I + INI+ + + E ++ + +++ +ES++M + E Sbjct: 552 IKKGHDT-IRLSINISPLQIENPHFVENFVHMLGICQFPGKNMEIELTESILMTDLEHMA 610 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903 +L L K I++ +DDFG S LSY+ +P T+K + S M ++ +II Sbjct: 611 QILNHLHKHSITVAIDDFGIGYSSLSYIQKLPIHTLKIDQSFMQSIQNETDESCLVNAII 670 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 M K + +A+ + IK L GCD +Q + P L+ Sbjct: 671 AMGKGLHLCTVAEGVETMTQIKYLQNQGCDAVQGYYFGEPRSGEKCLRF 719 >gi|121607371|ref|YP_995178.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Verminephrobacter eiseniae EF01-2] gi|121552011|gb|ABM56160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Verminephrobacter eiseniae EF01-2] Length = 981 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 137/570 (24%), Positives = 248/570 (43%), Gaps = 22/570 (3%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E+ L S + + D V + I G G L Sbjct: 419 ERKRSQEQLQLTAQVFDQSSEAIVIADASHRIVRINRAFSRITGYQESEAVGQSVRLLTM 478 Query: 456 IH--IN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN--GDIL 510 + + D L R+ R + E R D + + + + + + G I Sbjct: 479 AEAGPDCNADAVYARLA-----RQERWEGESWGRRKDGSGYPQWLSVSSVRDGDANGPIT 533 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 I + DI+ Q+++ E I A D LT +PNR +R + + ++ Sbjct: 534 HSITLFRDISLQREAQERIQRLAHFDPLTDLPNRVLLAERTQRQIAQEQARGG-QLALLF 592 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D +K +ND LG +GD +LV++ RR+ L+ D ++RL G+ F ++L ++ Sbjct: 593 LDLDHFKNVNDSLGHRIGDILLVAVARRLQSLIGPQDTVSRLGGDEFLLLLP-ATSAAHA 651 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A A+ ++A P + E++ T S+G A + + + + A+ AMY AK G N Sbjct: 652 AKVASALLTAVAQPFQIDPYELSTTLSVGIAMCPADGESFDTLYQRADAAMYSAKQSGRN 711 Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F + I+ L A+E + L Y P + L ++VG EAL++W HP+ Sbjct: 712 RYGFFTADLQARTARALQIENALRRALERQQFELHYQPQVSLGTGQVVGAEALLRWHHPE 771 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLD 807 G ++ +EF+ +AE I A+ ++L ARD W D P+ + +N+++ Sbjct: 772 LGVVAPAEFIPVAENSGQIVALGEWVLHTAARDAKRWLDM--QLPLRAVSVNLSAVQFRH 829 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 +L E + + + R++L +E + +P + ++ +L G+ L++DDFGT Sbjct: 830 PQLPEMVTRCLQQAGLPARRLELELTEGAAVDDPVAALAMMDQLHDRGVRLSMDDFGTGY 889 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LS L +K + S + + AI+ +II MA+ + A+ + + ++ Sbjct: 890 SSLSCLKRFQIYKLKIDQSFVRDLDDDANDRAIVSAIIRMAQALGMQTTAEGVETDGQLQ 949 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GCD Q + PL ++ L+ Sbjct: 950 FLRAQGCDEGQGYLFSRPLPADAFEAYLRA 979 >gi|77920151|ref|YP_357966.1| signal transduction protein [Pelobacter carbinolicus DSM 2380] gi|77546234|gb|ABA89796.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter carbinolicus DSM 2380] Length = 1061 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 168/615 (27%), Positives = 278/615 (45%), Gaps = 17/615 (2%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER------- 406 + A T ++ G + V L+ + + ER Sbjct: 446 MAHATTADAEHREWTYTSKQGEHISVSLVITAMRSPAHGIVGYLGIAQDITERKRQENTL 505 Query: 407 --QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 S V S V D + P I G + +HG L + + Sbjct: 506 RKLSQVVEQSPTAVILTDPQGNIEYANPKFTQITGYSLTEVHGKNPRLLKS-GETSAEEY 564 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R + + R EF + D W I P+ N GDI ++ I DIT++K+ Sbjct: 565 RDLWTTITAGR--EWHGEFHNKRKDGSLFWEHASISPVRNDAGDISHFLAIKEDITDRKR 622 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 E + A DNLTG+ NR DRL + + L +++D+D++K IND LG Sbjct: 623 YEEQLQHLATHDNLTGLANRALLQDRLEQSILFAKRSGRLVAA-LLLDLDRFKIINDSLG 681 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 + GD +L R+ E ++ D +ARL G+ F I+L N + A + I P Sbjct: 682 HSFGDRLLQIAADRLRESVRGADTVARLGGDEFVILLAEVANEEDVGKVAKKILDRITAP 741 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSD 703 + +REITVTAS+G + + +++NA++AMY AK G + ++ + Sbjct: 742 FQIADREITVTASLGISIYPQDGEDEETLIRNADIAMYQAKEEGNAFRLYAPEMNIVVHE 801 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + ++ DL A++ EL L Y P I L +I G EAL++W HP G I+ F+ +AEE Sbjct: 802 AMEMETDLRRALDRGELLLHYQPKIDLDSGKITGAEALVRWQHPVRGMIAPGMFIPLAEE 861 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I ++LE I I SW+ Q P + I N++++ ++EL +Q ++ T Sbjct: 862 TGLILPIGEWVLENICLQIKSWQTQ-GFPLVPIAANLSARQFRNDELIATIQRILQDTGL 920 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P ++L +ES++M N + + + L +G+SL LDDFGT S L+YL P D +K Sbjct: 921 PPHLLELELTESMIMRNVQTAAETMQELNALGVSLALDDFGTGYSSLNYLRRFPVDCLKI 980 Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S ++ A+ SII +A ++ +A+ + E ++ L + CD Q + Sbjct: 981 DRSFISDVADDPSAAAVATSIIAIAHSLGLQAVAEGVETEEQLEFLRQCACDSYQGYLYS 1040 Query: 942 SPLGFNSILKLLKER 956 +PL +L++ Sbjct: 1041 APLAVEEFTAMLRQE 1055 Score = 135 bits (339), Expect = 5e-29, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 122/328 (37%), Gaps = 12/328 (3%) Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274 ++ + A ++L I S+ + I S LS L++ + Y+ Sbjct: 2 DNVFLALIQNAALLLAMAFIYDMMTSRYRLKHRLIVQICVGISLGLLSIILMLSPWQYIP 61 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI----ARITLASIVLYYTYFIIYHG 330 + + + SG+ A+ ++ A ++ IY Sbjct: 62 GIVFDTRSVLLGISGLFFGAVATSVAMLMAAAFRLFQGGAAAWIGVGVIFASGIVGIYWK 121 Query: 331 MKGYERA----VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL---IG 383 + + A + + ++ + +M + + + ++LI L + Sbjct: 122 YRNRKSAEQLTWWQLYGFGVLVHLIMLAFMLLLPWQTAFRVLHHISLPVLLIYPLATAML 181 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ S+ + + ER +A+ S ++D ++ + + A ILG Sbjct: 182 GSLMLKRQRRDQISKALQTSEERLRMALKASKQGLYDLNVQSGNMIVNAEYALILGYDPQ 241 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502 + +W+ +H DR + +++ + + EFR R Q+ W++ + + Sbjct: 242 NFRETNGDWIARMHPEDRSAVLAVYRNYLAGKTEEFRAEFRQRTRCGQWKWVLSMGKIVE 301 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530 +++G LR +G +DITE+++S E Sbjct: 302 RDTHGQPLRMLGTFSDITERRQSEEQTR 329 Score = 55.7 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 16/163 (9%) Query: 386 VIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASG 443 +Q + + R + + + ++ + D +LG ++ Sbjct: 348 TLQRLFEEQTLASAEIERTSRLLAEVLNAASEVSIIATDPRGIITVFNRGAEKMLGYSAE 407 Query: 444 SMHGPIRNWLPYIHIN----------DRDNFRTILDSFVGYRRGRLQYEFR---VRAADN 490 M G + ++ DR ++ + E R + Sbjct: 408 EMVGRETPTVFHLASELQTRYTELGADRGTPIKDFADYMAH-ATTADAEHREWTYTSKQG 466 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + + I M + I+ Y+GIA DITE+K+ + + Sbjct: 467 EHISVSLVITAMRSPAHGIVGYLGIAQDITERKRQENTLRKLS 509 >gi|113969753|ref|YP_733546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113884437|gb|ABI38489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 1430 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 127/561 (22%), Positives = 258/561 (45%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 870 QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRTDFIGNLLTF--DLYP 927 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +F + + + + GR E D M + I + + G++ Y+G+ +D Sbjct: 928 E---SFTNQIRTMLKQQ-GRWASEVEASRGDKSHFHMELTIDAIYDELGELSHYVGVFSD 983 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L ++ + + +MV+D+D +K+ Sbjct: 984 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLV-----NKEITHALMVLDLDNFKR 1038 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L ++ RI ++ + RL G+ F I+L ++ A A + Sbjct: 1039 INDSLGHQIGDQLLKLVSVRIKSVVPKNTSIYRLGGDEFAIVLDKTSDISACAAIAGRVI 1098 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 ++ + ++ + SIG + + + +L+ A++AMYHAK GGN + + Sbjct: 1099 EAFKTIFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1158 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + ++ + Y P + L + G+EAL++ +HP G + ++ Sbjct: 1159 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEALVRLNHPTRGLVPPND 1218 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ +L + ++A Sbjct: 1219 FIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLFKG-RVAVNLSSRQFALPDLQQRIEA 1277 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE + ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1278 ILRLTQLPAAHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1337 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1338 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1397 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + +LL++ Sbjct: 1398 IQGYIFSKAINETEFTQLLQD 1418 Score = 120 bits (301), Expect = 1e-24, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 2/153 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 +I++L + + +L + I ER L++ GSGD +WDWDI + + Sbjct: 723 IILMLFSLFIFKAILRKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 782 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L + IH D++ R L+ + +RV+ D+ + W++ Sbjct: 783 -LEFPRDGHRSGNSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWIL 841 Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 R + + + + LR G +I++ K+ E Sbjct: 842 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 874 >gi|124514573|gb|EAY56085.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum rubarum] Length = 699 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 150/585 (25%), Positives = 278/585 (47%), Gaps = 9/585 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 I+ + + + + E+ + + GD V D P + G SG Sbjct: 115 VAIRDITRRRQLMRDLRHEKEQWFVTLKSIGDAVITTDENSRVTYVNPIAEELTGWQSGE 174 Query: 445 MHGPIRNWLPYIHIND-RDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 HG + +I R ++ + L + D + + P+ Sbjct: 175 AHGLPIGQVFHIVNEYTRTRASNPVERALRDGTIVGLANHTLLLGRDGREWSIEDSAAPI 234 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + I + + D++E+++ I A D LTG+PNR F DRL + + Sbjct: 235 KDDEETIRGCVIVFRDVSEKRRLERQIAYQATHDALTGLPNRHLFQDRLVRTIARAHRSG 294 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + ++ IDID +K +ND LG GD VLV L +R+ +++ D +ARL G+ F +IL Sbjct: 295 H-SFALLYIDIDHFKNVNDRLGHPFGDRVLVELGQRLKGVVRETDTVARLGGDEFAVILE 353 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 ++ + + ++P + E + +T SIG A + ++ ++KNA++A++ Sbjct: 354 EVSDRNEGMVLGRRLMHEASLPFRIDEARVDLTVSIGVAQYPEDGTDATLLVKNADIALF 413 Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 H K G N ++ F R+ + I+ +L A++ E +L+Y PI+ L + VG+EA Sbjct: 414 HVKGDGRNSIQFFSEEMNRTVQKRIVIENELREALDRDEFFLLYQPIVDLERGKAVGVEA 473 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W H + EF+ +AEE +I + ++LE R W DQ P + +N+ Sbjct: 474 LLRWRHGDEARLP-EEFVPVAEEAGLIVPVGRWVLETALRQTRRWLDQGFAPG-RVTVNL 531 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 A+K L E +++L+++T S ++L +E ++ ++R L ++R++G+ +++ Sbjct: 532 AAKQLHSLEFAAFLESLLAETRVEASLLELEVTEGTLLHRDHQTRETLSKIREMGVRISI 591 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL + P DT+K + S +TG S AI+R+I+ +AK++ ++A+ I Sbjct: 592 DDFGTGDSSLNYLRHFPVDTLKIDRSFLTGFPSNHYDRAIVRAILALAKSLSLDVVAEGI 651 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 E + L GC +Q + P+ + I P ++ Sbjct: 652 EREEQARFLRDDGCVLVQGYLYSHPVSPDEIPPFFGRTGPRSGSS 696 Score = 70.4 bits (171), Expect = 2e-09, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 2/132 (1%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 F + D V D+ R + P + + +S G +L Y +D Sbjct: 4 FESVFEHQFILQAMEDAVIATDLERHVLWANPAFSKLFQFSSEETIGKTTAFL-YADPSD 62 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + + YE R D Q W R ++N GD + + DIT Sbjct: 63 YET-QGRIRYHASAPSDPRPYEVLYRRKDGQTFWGEARGATITNDAGDRIGFTVAIRDIT 121 Query: 521 EQKKSLEGILCN 532 +++ + + Sbjct: 122 RRRQLMRDLRHE 133 >gi|114046982|ref|YP_737532.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] gi|113888424|gb|ABI42475.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] Length = 1430 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 127/561 (22%), Positives = 258/561 (45%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 870 QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRTDFIGNLLTF--DLYP 927 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +F + + + + GR E D M + I + + G++ Y+G+ +D Sbjct: 928 E---SFTNQIRTMLKQQ-GRWASEVEASRGDKSHFHMELTIDAIYDELGELSHYVGVFSD 983 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L ++ + + +MV+D+D +K+ Sbjct: 984 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLV-----NKEITHALMVLDLDNFKR 1038 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L ++ RI ++ + RL G+ F I+L ++ A A + Sbjct: 1039 INDSLGHQIGDQLLKLVSVRIKSVVPKNTSIYRLGGDEFAIVLDKTSDISACAAIAGRVI 1098 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 ++ + ++ + SIG + + + +L+ A++AMYHAK GGN + + Sbjct: 1099 EAFKTIFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1158 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + ++ + Y P + L + G+EAL++ +HP G + ++ Sbjct: 1159 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEALVRLNHPTRGLVPPND 1218 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ +L + ++A Sbjct: 1219 FIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLFKG-RVAVNLSSRQFALPDLQQRIEA 1277 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE + ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1278 ILRLTQLPAAHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1337 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1338 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1397 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + +LL++ Sbjct: 1398 IQGYIFSKAINETEFTQLLQD 1418 Score = 120 bits (301), Expect = 1e-24, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 2/153 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 +I++L + + +L + I ER L++ GSGD +WDWDI + + Sbjct: 723 IILMLFSLFIFKAILRKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 782 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L + IH D++ R L+ + +RV+ D+ + W++ Sbjct: 783 -LEFPRDGHRSGNSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWIL 841 Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 R + + + + LR G +I++ K+ E Sbjct: 842 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 874 >gi|326796787|ref|YP_004314607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] gi|326547551|gb|ADZ92771.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] Length = 985 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 144/582 (24%), Positives = 266/582 (45%), Gaps = 20/582 (3%) Query: 389 HVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 ++ ++ I ++ E R S + D + D + I G + ++G Sbjct: 409 YLFLVRDVTERIKNEAELRISAIAFETQDAILITDQHNRIIRVNNAFEAITGYSESEVYG 468 Query: 448 -PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 H DR+ +R + S G + E R D + I + + Sbjct: 469 KNPAIISSGRH--DRNFYRKLYQSL--NNIGHWEGEIWNRKKDGTVFPEWLYITAIKDEE 524 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 +L Y+ DIT+ K + + I + D LT +PN+ FL+ L LD+ + R Sbjct: 525 ERLLHYVATFRDITQDKNNQQRIEQLNYYDALTRLPNKTLFLEELEHRLDVMSEIRYRRS 584 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS--- 623 ++ +D+D +K +ND G GD +L + R+ ++++ D +ARLS + F I+L Sbjct: 585 AILYLDLDNFKDLNDYYGHKQGDLLLKQVASRLVDIVRPQDTVARLSADNFVILLEDADV 644 Query: 624 ----ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS--KITSSEMLKNA 677 E S + A + + P E+ +TASIG + + + TS +++K A Sbjct: 645 SVNPERASYRAKHVATKILDELKHPFVPGAHELVITASIGMTEFGADTPEHTSEDIVKQA 704 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEI 735 E+AMY AK G ++ + + L A+ + L Y P + ++++ Sbjct: 705 EMAMYEAKQAGRAQSCFYQPKMHERVVQRVYFETSLREALSKEQFSLHYQPQFDV-NKKL 763 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG+EALI+W+HP+ G + EF+ AEE +I I ++L + + W I Sbjct: 764 VGVEALIRWNHPENGLVPPGEFIPFAEESKLIIKIGEWVLMKACQVKADWLKHDAFRDIN 823 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + IN+++ + E ++ + ++ +P+ I+L +ES+++ + + + L+ +G Sbjct: 824 MSINVSALQFSQDNFVEQVRHALDQSGVNPNTIELELTESMLVNDQDDVIRKMQSLKALG 883 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913 + ++LDDFGT S LSYL +P D +K + S ++ +E I SII + N+ + Sbjct: 884 VLISLDDFGTGYSSLSYLTRLPIDQLKIDQSFVSSFSEGSRESTIAASIINIGHNLNMEV 943 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 IA+ + + + L GCD Q +A P+ +L LL + Sbjct: 944 IAEGVEQQSQFEWLKSQGCDLFQGYGLARPMPEEDLLSLLSQ 985 Score = 39.9 bits (92), Expect = 2.4, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 23/220 (10%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 L +F+ G W++ +V L I LI + + Q Sbjct: 236 LPGTRWFLFVSPKGTWVSKQTTYSLGFAVAFVVMLLSGISYLIARKFFERSVQASLVEQK 295 Query: 400 IFSDG---ERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATI--LGLASGSMHGPIRNW 452 ER S + D + + + + + + L L G + Sbjct: 296 TKEAEITLERLSNTLDAIPDYLVEVNDEGVVAENHYSSERELMKWLPLHPGEWVVDCLSE 355 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN--GDIL 510 + + + +F+ L + + D W + + + G Sbjct: 356 ESML-----AWGQAMKTAFLDGVSTGLSFRVEL---DEDEKWFELSAVYTAPDDLKGRAA 407 Query: 511 RYIGIANDITEQKKSLEGILCNA----FQDN--LTGIPNR 544 Y+ + D+TE+ K+ + +A QD +T NR Sbjct: 408 FYLFLVRDVTERIKNEAELRISAIAFETQDAILITDQHNR 447 >gi|34452029|gb|AAQ72480.1| sensory box/GGDEF family protein [Bacillus cereus] Length = 607 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 149/575 (25%), Positives = 274/575 (47%), Gaps = 11/575 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 Q + + +R + D V+ ++ + ++ + Sbjct: 37 TTQLEGEVEEGASALSKSEQRYTSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYC 94 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + L +I D D + L R L E R + + ++++ I + P Sbjct: 95 EVESYSLLHFIDSKDHDLLKKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-I 151 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 N +++ GIA DIT + + + AF D LTG+PNR+ F L IL+ + T N Sbjct: 152 NKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSAN-D 210 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 VM +D+D++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F I+L Sbjct: 211 VAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMY 270 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + A A + + P + E+++T SIG A + +E++KNA++AMY AK Sbjct: 271 SEKSAAFIAEQILNILNKPFFIQGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAK 330 Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N F +++ ++ +L A++ +E +L Y P + ++I+G EALI+ Sbjct: 331 ANGKNRFVFFSKEMSIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQIIGFEALIR 390 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HPK G +S ++F+ +AEE I + ++L + W +Q + + +N++ Sbjct: 391 WKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSQLKVGVNLSVV 449 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 +L + ++ +T P + + +ES+ + + L +L+ +GI +++DDF Sbjct: 450 QFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDF 509 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL P +T+K + G + AI+ SII ++K + +IA+ + E Sbjct: 510 GTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETE 569 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 K L CD+IQ ++ P+ + +LL ++ Sbjct: 570 EQWKFLYEQNCDHIQGFFISKPVSSKDVWRLLHKK 604 >gi|91790100|ref|YP_551052.1| diguanylate cyclase/phosphodiesterase [Polaromonas sp. JS666] gi|91699325|gb|ABE46154.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Polaromonas sp. JS666] Length = 861 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 137/546 (25%), Positives = 247/546 (45%), Gaps = 19/546 (3%) Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + G L P ++ D R +Q E Sbjct: 322 RIIFANNAFERHTGYGRNEALDQSPRLLCGPLTQRSELDRINKAFL-----RGEPVQAEL 376 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDI-LRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 D + WM + I P+++ G ++ + DIT +K + I+ AF D LT +P Sbjct: 377 ITYRKDGKHFWMEVDIVPVADDAGVFFTHWVAVGRDITRRKVAESEIMHLAFYDPLTQLP 436 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NRQ +DRL L +M ID+D +K +ND LG GD +L + R+ Sbjct: 437 NRQLLMDRLQQALAHPPQLPR-EGALMFIDMDNFKTLNDTLGHHKGDLLLQQVAERLTGC 495 Query: 603 LKFPDILARLSGNRFGIILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTAS 657 ++ D +ARL G+ F ++L + + + + +++ P L + T S Sbjct: 496 VRTADTVARLGGDEFVVMLENLGHDPREAGARARAVGEQILAALSEPYLLAGYQHYSTCS 555 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG S+ + + ++LK A+LAMY AK G N + F + ++ DL + Sbjct: 556 IGVTSFNQNHDSIGDLLKQADLAMYQAKTAGRNTLCFFDPVMQAAVSASAALQSDLRQGL 615 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + L Y P + D ++G EAL++W+HP G + ++F+ +AEE +I + ++L Sbjct: 616 REKQFLLYYQPQV-GRDGRMMGAEALLRWNHPVRGMVPPADFIPVAEESGLILPLGQWVL 674 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 E R + +W + + I +N++ + E + + A ++ T SP ++KL +ES Sbjct: 675 ETACRQLGAWAQRPETAALSISVNVSVRQFRHPEFVDLVMAALNDTKVSPHKLKLELTES 734 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 ++ + E + + +L+ +G++L++DDFG S LS L +P D +K + S + Sbjct: 735 LLADDMEITIGKMAKLKAMGVTLSIDDFGMGYSSLSCLKRLPLDQLKIDKSFVADILRDP 794 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI R+II +A+++ ++A+ + E + L R GC+ Q PL ++ + Sbjct: 795 NDAAIARTIIGLAQSLGLGVVAEGVETEAQREFLYRQGCESYQGYLFCKPLPIEALEAFM 854 Query: 954 KERFPL 959 K P Sbjct: 855 KNPAPG 860 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 31/281 (11%), Positives = 76/281 (27%), Gaps = 30/281 (10%) Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIA-ILFCMSFYYPMVTASIARITLASIVLYYTYFI 326 FL R A+ ++ + + + S + + T Sbjct: 31 FLRETDRLTRLAARSCGVSIAMVVVLEDGQAVFSAGTGFAAPAREGLVTLCAATLDTPLC 90 Query: 327 IYHGMKGYERAVLLIPAWILI----FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382 Y + + ++ + + M R + + L L+ + Sbjct: 91 APTLPAPYAPGIRFYRGFQMVGEDGALLGLLAVMDTLPRSLSREQEEGLQTLARLLAGQL 150 Query: 383 GFTVIQHVLAT---------GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 +H L + R S+ + + + D + + Sbjct: 151 ELRQQRHALDAQRQHLGTTMRQTQEDAHRLATRLSITLENISEGFYTLDPEWRFTYLSRE 210 Query: 434 IATILGLASGSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 +LG + G + + I+ F + + V + + + E D Sbjct: 211 GERLLGRPGTELLGKSIWKEFPGIIN----TAFGEQIGAAVAGNQ-QAELEAHFAPMD-- 263 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 W +R P + D++E++K+ E ++ Sbjct: 264 -RWFEVRAYPYPD------GVAIYFRDVSERRKAREQLMLL 297 >gi|24374604|ref|NP_718647.1| sensory box protein [Shewanella oneidensis MR-1] gi|24349221|gb|AAN56091.1|AE015745_3 sensory box protein [Shewanella oneidensis MR-1] Length = 1422 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 131/561 (23%), Positives = 255/561 (45%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 862 QKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRSDFIGNLLTFE--LYP 919 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +F + + + + GR E DN M + I + + G++ Y+G+ +D Sbjct: 920 E---SFSNQIRTMLKQQ-GRWASEVEANRGDNSHFHMELTIDAIYDELGELSHYVGVFSD 975 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L ++ + + +MV+D+D +K+ Sbjct: 976 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLV-----NKEINHALMVLDLDNFKR 1030 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L ++ RI + + RL G+ F I+L ++ L A A + Sbjct: 1031 INDSLGHQVGDKLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIV 1090 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + + ++ + S+G + + +L+ A++AMYHAK GGN + + S Sbjct: 1091 DAFNTVYEIDNEQLVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSES 1150 Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ + + ++ + Y P + L + G+EAL++ +HP G I ++ Sbjct: 1151 LNEHAIKQLETENLIREGLKEDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPND 1210 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ +L + +++ Sbjct: 1211 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGLFKG-RVAVNLSSRQFALPDLQQRIES 1269 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T S ++L +E V+ PE + ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1270 ILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1329 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1330 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1389 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + LL+E Sbjct: 1390 IQGYIFSKAINEAEFTLLLQE 1410 Score = 121 bits (304), Expect = 5e-25, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 2/155 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 LI + + + + +L + I ER L++ GSGD +WDWDI + + Sbjct: 715 LITMFLSLFIFKAILRKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 774 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L R+ IH D++ R L+ + +RV+ D+ + W++ Sbjct: 775 -LEFPRDGHRSGNRDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWIL 833 Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 R + + + + LR G +I++ K+ E + Sbjct: 834 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLR 868 >gi|119944951|ref|YP_942631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] gi|119863555|gb|ABM03032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 1014 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 145/562 (25%), Positives = 258/562 (45%), Gaps = 13/562 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + S+ S + + D + +TT P + G ++ + G ++ + Sbjct: 455 ESMQLASMVYQNSREAMTVTDSNGNIITTNPAFTEMTGYSADEITGKSHTFIVSKQQD-- 512 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 ++ + G + E R + + + ++ I + N + + R + +DITE Sbjct: 513 KRVYQRMELAL-NSTGHWRGEVSCRHKNGENYMALLGINSIYNEDRSVHRRVAQFSDITE 571 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +KKS + I A DNLTG+ NRQ F D+L + + L ++ +D+D++K +ND Sbjct: 572 RKKSEKIIWKQANFDNLTGLSNRQMFHDQLLHEKNKAQRR-GLNVGLLFLDLDRFKAVND 630 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG +GD +L+ + +R+ ++ D+++R G+ F +I+ N+ + A + + Sbjct: 631 TLGHNMGDQLLIDVAQRLRNCVRKRDLVSRFGGDEFTVIIGGLKNTQSVERVAQKILCEL 690 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 A P L E+ + +T SIG + + +LKNA+ AMY AK +G N F S Sbjct: 691 AEPFLLGEQNVYITPSIGITFYPKDGEATEMLLKNADQAMYSAKEKGRNCYHYFTNSMQE 750 Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + DL A++ ++L L Y PI+ L +I EALI+W HP+ G +S +EF+ Sbjct: 751 QVERGGQLANDLRYALKKNQLELYYQPIVALGTGQIRKAEALIRWHHPELGMVSPAEFIP 810 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD--NELCEGMQAL 817 IAEE I I ++ + A + WR + + IN + + +++ ++ L Sbjct: 811 IAEETGTIVEIGDWVFRQAADQVAHWRREY-QNDFQVSINKSPVQFREGGSDITSWLEHL 869 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ + + +E +++ R L R GI ++LDDFGT S +SYL Sbjct: 870 LA-LGLPGQAVVIEITEGLLLDGSSRIVIDKLLAFRDSGIEVSLDDFGTGYSSMSYLRKF 928 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + + + +II MA + +IA+ I E + L+ GCDY Sbjct: 929 HIDNLKIDQSFVRNLKVDSDDMILCEAIIIMAHKLGMQVIAEGIENEEQRRLLSAAGCDY 988 Query: 935 IQDSHVASPLGFNSILKLLKER 956 Q A PL LL Sbjct: 989 GQGYLFAKPLPEKDFSCLLLRH 1010 Score = 114 bits (286), Expect = 7e-23, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 1/150 (0%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I + I E+ + GS WDW+I + V A +LG Sbjct: 309 FVIAGILDSSERKHAEDKIRGRKEQLLSVLSGSELGFWDWNIEANTVHRNARWAEMLGYR 368 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + L +H ND + + R + + E+R+R ++ W++ + Sbjct: 369 FEDIQNDTSINLDSVHPNDCGRVWQSVTDHLEGRTAQHKIEYRMRTRQGEYKWILDCAKI 428 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + + LR G DIT++K + E + Sbjct: 429 VNYGEDQQPLRMSGTHTDITKRKLAEESMQ 458 Score = 99.3 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 48/333 (14%), Positives = 96/333 (28%), Gaps = 21/333 (6%) Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258 A LLA+F R+ + + + + I + G I Sbjct: 16 ALLLAMFFIYDMAAFRNRTVFGFYWAIFTGIALGLIGIIIMLTPWEYAPG---IIVDSRA 72 Query: 259 IALSSSLIIF-LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLAS 317 + L S + F L A + G A I +L ++ + R S Sbjct: 73 VLLGISGLFFGTIPTLIAMVITATLRLFQGGGAAVIGVLVIITSGTLGIAWRYYRPHPLS 132 Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 + + ++ + G A+ I W + + + + L Sbjct: 133 ELSFREIYLFGVIIHGVMLALTFIFPWEMTLAVLSNISLPVLLLYP-------------L 179 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 I L+G +Q + + + + + + P + I Sbjct: 180 ITALLGMLFVQRLRRNQS-TDALKESEFLFRSQFDLGSIGIAITYPGKGWLRVNPRLCEI 238 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 LG + + NW H +DR D + + R D + ++ + Sbjct: 239 LGYREEELL--LLNWSELTHPDDRHLDLYQYDQMLTGEEDGYSLDKRFIRKDGESVYVHM 296 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 I +G + I D +E+K + + I Sbjct: 297 TISCYR-VDGAVQFVIAGILDSSERKHAEDKIR 328 >gi|91775467|ref|YP_545223.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] gi|91709454|gb|ABE49382.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Methylobacillus flagellatus KT] Length = 722 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 132/560 (23%), Positives = 256/560 (45%), Gaps = 17/560 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457 + + + +A+ + IV D +I + G + H Sbjct: 161 ALIKEHDELKIALD-AHAIVAVTDARGVITRVNDKFCSISQYGREELVGSTHRIVNSGHH 219 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 ++ F+ + + + E RA D +W+ I P +G ++YI I Sbjct: 220 P--KEFFQHLWRTVSSGQ--VWNGEVCNRAKDGTLYWVHTTIVPFLGEDGVPVQYIAIRA 275 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT++K + + A D+LTG+PNR+ ++RL ++ + + VM +D+D +K Sbjct: 276 DITQRKILEQSVQRMALYDDLTGLPNRRLMVERL-QMIREACVRSHRHGAVMFLDLDNFK 334 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIAD 632 +IND G GD +L + +R+ E ++ D +AR G+ F I+L + + + Sbjct: 335 EINDTHGHEQGDRLLKQVGQRLRENIRQVDTVARAGGDEFIILLADLDEDPAKATAQAYN 394 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A +R +++ P + + S+G ++ +E+ K+A++A+Y AK +G N + Sbjct: 395 VAEKLRNALSTPYIFNRIVLHTSTSVGIVMFSDKAKPKTELFKHADMALYRAKAQGKNRI 454 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F S + + DL A++ E L + P++ D +++G EALI+W HP G Sbjct: 455 SMFDPSLQAEVLEYASLLADLRQALQRDEFRLYFQPVVN-RDGKVIGHEALIRWIHPVRG 513 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ +AE+ +I+ I ++L + + W + A + +N+++K D + Sbjct: 514 MVLPGQFIPVAEQTGLIQEIGQWVLSMACKQLNVWSEDAVKSQWTLSVNVSAKQFRDMDF 573 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + I ++ P R+ L +ES+ + ++ + L+ IG+ ++DDFGT S L Sbjct: 574 VGKVHDAIRQSGADPKRLWLELTESMFHTDIVQTIEKMRALQDIGVHFSMDDFGTGYSSL 633 Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 S L +P D +K + S + AI+R+I+ +A + T++A+ I L Sbjct: 634 SVLKLLPLDQLKIDRSFVRDVIDDPNDAAIVRTILALAGILNLTVVAEGIESSEQFDFLE 693 Query: 929 RMGCDYIQDSHVASPLGFNS 948 + GC Q P+ + Sbjct: 694 QHGCQAFQGYFFGKPVPMDE 713 Score = 44.2 bits (103), Expect = 0.11, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 39/153 (25%), Gaps = 11/153 (7%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + +D+ G G Sbjct: 22 RLVQVETALRKQDVQLRTILDNLPLCAICFDVEFCCQFVNLSFCDDFGRTPEQWAGAR-- 79 Query: 452 WLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN----SN 506 L + D + + ++ + F VR A+++ + I + Sbjct: 80 -LASMMPEDWLRHLEPAMRQALSGKQANIH--FAVRGANDEILYKNALIISRRGMTDMPH 136 Query: 507 GDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538 G + + D TEQ+ + ++ D L Sbjct: 137 GSTTGVLVLVTDCTEQELMSQKLMALIKEHDEL 169 >gi|326317860|ref|YP_004235532.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374696|gb|ADX46965.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1083 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 141/597 (23%), Positives = 265/597 (44%), Gaps = 14/597 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 PA + G + A + + E + S + + + + V Sbjct: 474 PAWAVLSARRLRFQGRDAMLTAFAPINVLKVMEQRLELWAKVFEASSEGIIIMNAAQRIV 533 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + + G L + TI + + Q E R R Sbjct: 534 SVNQAFCRSTHYDFYEVIGEQLGML-LDAPGESAPGETIARALAD--KESWQGEVRFRRR 590 Query: 489 DNQFH--WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + W+++ G + +IGIA DIT++K++ E I A D LT +PNR Sbjct: 591 SGESYPAWLMVSAVREGGKGGAVTNHIGIAIDITDRKRNEERIRFLAHHDVLTELPNRSL 650 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 + RL L+ +A + V+ ID+D++K IND LG +GD +L S+ R+ + ++ Sbjct: 651 CVQRLQAGLEQAARTGE-QLAVLFIDLDRFKAINDTLGHHIGDGLLRSVAARLVQSVREG 709 Query: 607 DILARLSGNRFGIILISENNSLKIADFAI-AMRKSIAMPINLLEREITVTASIGFASWTS 665 D ++RL G+ F I++ + ++ + I + E++V+ S+G A + Sbjct: 710 DTVSRLGGDEFVIVMRQVEGAQQVLRVVEERLIPLIRQSHPVEAHELSVSCSVGIAVYPE 769 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLV 723 E+++ A+ AMY AK G + + R +++ L A+E E L Sbjct: 770 DGADLDELMRRADAAMYEAKTAGRDMARLYSLETDRRVQARQAMEQSLRRALERREFALH 829 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P + GLEAL++W HP G + EF+ IAEE +I+AI ++L++ Sbjct: 830 YQPRMSARTGMPTGLEALLRWRHPSLGEVLPGEFIPIAEEAGLIRAIGAWVLDQACAQWA 889 Query: 784 SWRDQ---ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 +WR + + + +N+++ L D L + AL+++ ++L +ES +M N Sbjct: 890 AWRASEAGGGLAGLPVSVNLSAAQLADPLLVPDIAALLARHGMPARCLELEITESQLMDN 949 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 ++ L L+++G+ L++DDFGT S L+YL D +K + S + + +AI Sbjct: 950 AGVAQGQLAALKQLGVQLSIDDFGTGYSSLAYLKRFAIDKLKVDKSFIRDMLASPADMAI 1009 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 R+II + + + ++A+ + ++ L + CD +Q + L ++ + + E Sbjct: 1010 TRAIIGLGRTLGLQVVAEGVEDAATLRMLESLDCDEVQGYLFSRALPPEALQRWVAE 1066 >gi|323703978|ref|ZP_08115604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfotomaculum nigrificans DSM 574] gi|323531054|gb|EGB20967.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfotomaculum nigrificans DSM 574] Length = 631 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 133/575 (23%), Positives = 256/575 (44%), Gaps = 8/575 (1%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 V ++ + Q+ + + R + + D + Sbjct: 59 VAELVAAEEELRQNYELLQEREKRLAESERRFRTMLENVQLLAVVLDQQGRILFINDFFL 118 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + G + G + +I ++ R + F+ R + + + + + Sbjct: 119 KLTGWQCQEVLGR-DYFSLFILPAKQEQMRAMFQQFINEGRIEVNLKNHIVTRQGEQRLI 177 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + G + I DITE++ E + A+ D LTG+PNR S ++L + Sbjct: 178 YWNNTLLLDEQGGVAGIASIGEDITERQLIQEKVKFLAYHDVLTGLPNRLSLTEQLAREI 237 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + + + V+ +D+D++K ND LG GD++L + R+ LL IL RL G+ Sbjct: 238 KRAERLGS-QLAVLFLDLDRFKVTNDTLGHTAGDELLKQVGERLLGLLNHHGILTRLGGD 296 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F IIL + + A + ++ P N+L ++ VT SIG A + + +LK Sbjct: 297 EFIIILPDLTGLPQAVEIAEGLLQAFQRPFNVLGSQLHVTTSIGIAVFPADGTDVQTLLK 356 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDE 733 NA+LAMY AK +G N+ + + + R ++ + L +E + L Y PI+ Sbjct: 357 NADLAMYRAKGKGRNNYQLYTPEMQETVRRQLELEEALRQGLERQQFELFYQPIVDCQ-G 415 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +V EAL++W P IS +EF+ +AEE +I ++ ++L+ R + W+ Sbjct: 416 RVVYREALLRWRRPGGEIISPAEFIPVAEETGLILPLDDWVLQTACRQLRQWQTAC-CQD 474 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++ L + + A++ +T P + + +E+V M N +++ + LR Sbjct: 475 MRVAVNMSGLQFAQPNLVDKVAAVLRETGLQPRLLIIEITENVAMRNLQQTIKHIKGLRD 534 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 +G+S+ LDDFGT S LSYL + +K + S + + AI+R+++ M +++ Sbjct: 535 LGVSVALDDFGTGYSSLSYLKNFAVNIIKIDRSFVADFINNRVSAAIVRAVLLMTESLHV 594 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 ++A+ + + L MGC + Q + P Sbjct: 595 AVVAEGVETRQQLAVLQEMGCRHFQGYLLGRPQPL 629 >gi|320354763|ref|YP_004196102.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfobulbus propionicus DSM 2032] gi|320123265|gb|ADW18811.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfobulbus propionicus DSM 2032] Length = 978 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 140/571 (24%), Positives = 252/571 (44%), Gaps = 12/571 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q +LA + + + + + ++ D +T I G + G Sbjct: 397 QKLLAENATRKSAENYLQLFKSIFDNAIEGIYITDPEGRILTVNQSFCKITGYQDAEVIG 456 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + L Y D + R G E + D + I + N Sbjct: 457 RNPSMLGY-----GDQGKAFYQGMWRNLRTMGAWSGEVWNQRKDGTVCPQWLSISVIRND 511 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 I Y +DITE K+ + I A+ D LT +PNR + RLT + ++ + +L Sbjct: 512 QQQITHYFAFFHDITELKRREKQISIMAYSDALTKLPNRAALERRLTKAIARASRN-HLN 570 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V ID+D +K IND LG GD VL+ + R+ ++ D L+RL G+ F ++ S + Sbjct: 571 LAVFFIDLDNFKNINDTLGHDKGDQVLIEVADRLSGTIRSEDTLSRLGGDEFILLSESID 630 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 N + A + S+ PI L I + ASIG A + T+ E++KNA++AMY AK Sbjct: 631 NEQAVYTLASRILASLKQPIQLTPHTIYINASIGIALFPEDGQTTQELIKNADMAMYKAK 690 Query: 686 HRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N F +RV + + ++ E + Y P I L E EAL + Sbjct: 691 SEGKNTFVLFTREMNEKLLNRVRTENAIRAGLKKREFSVFYQPKIDLASERPTSFEALAR 750 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W H I +F+ IAEE +I ++L++L+ + + + + I +N++ + Sbjct: 751 W-HRNGVVIGPDQFIPIAEESGLIDEMSLYVLDEVCLFLGKLQGHNLRM-LPISVNMSPR 808 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + ++ E + A++ I+ +E+ M + + + + R R+ GI ++DDF Sbjct: 809 TFNNVQIVETIDAILGSHHIDHRLIEFEITETTAMKDVQHTLATMHRFRQRGIRFSIDDF 868 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 GT S LS+L +P T+K + + +I+ +I M+K ++ ++A+ + Sbjct: 869 GTGYSSLSHLSEMPVSTLKIDKRFIGADDPNSRSIVSTITAMSKQMQLKVVAEGVETSNQ 928 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 ++ L ++GC+ +Q + + P+ L L+ Sbjct: 929 LQWLRQIGCNEVQGFYYSRPMPEEETLHYLQ 959 >gi|229014470|ref|ZP_04171588.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] gi|228746820|gb|EEL96705.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] Length = 909 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 182/857 (21%), Positives = 346/857 (40%), Gaps = 34/857 (3%) Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIY 174 S F L + R+ D F ++P F + L I Sbjct: 65 SRLFWITLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSD--FFYL------LFLIS 113 Query: 175 LWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLG 230 Y+ L + I + A F +Y++ ++ I T + +V L Sbjct: 114 FAFAFLYEIIYGRDLLEQLFTICDICIIVTAQFTLSYYLLIERTIHIFTTSYIDMFVQLT 173 Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITF 287 Y D FL +NL L + L S+LI++ Y + + + T Sbjct: 174 YPMADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAYIKYFQPEHSMFTV 233 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 + + +L + + + + ++ I + Sbjct: 234 APFYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISVVMLIVFILVENVF 293 Query: 348 F-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFS 402 I IGL + L + L+L + Q L T + ++ Sbjct: 294 APIVVIGLMVTFAFVLIRHTLVRRQNKILLLAQMQFSLELEKQIELRTEDLVEQKNELYH 353 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + + D ++ D+ + + T+LG + + + ++ D + Sbjct: 354 NQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLE 411 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 T + + E R + +++ + P+ I + DITE Sbjct: 412 EIITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGAYLMIKDITES 468 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K+ E I A+ D LT + NR+SF +L + + VM +D+D++K IND Sbjct: 469 KQQQEQINFLAYHDTLTELANRRSFHQQLEKAIARAKISKRP-FAVMFLDLDRFKVINDT 527 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD +L+++ +R+ + LARL+G+ F I++ + A + S+ Sbjct: 528 LGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRDVQKIADMIVLSMN 587 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P + + + ++ SIG A + + +L++A++AMY K++G N + ++ Sbjct: 588 EPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGKNGSSLYTKELYKK 647 Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 I++DL LA+ N E +LVY P + + +I+G EALI+W HP G+IS EF+ I Sbjct: 648 MERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHPLLGDISPCEFIPI 707 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 EE + + ++L R + W+ + + +N+++K+ N+L E + ++ Sbjct: 708 VEETPQVIPLGHWVLRESCRQLKIWQS-FGYTNLKMSVNLSAKEFQQNQLIENISQILKD 766 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P + L +E + M + + + L +L++ GI ++DDFGT S L+YL P DT Sbjct: 767 VKIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDT 826 Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + AI+ +I+ +A + +++A+ I E +K L + C Y+Q Sbjct: 827 LKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGY 886 Query: 939 HVASPLGFNSILKLLKE 955 + + PL +K L++ Sbjct: 887 YFSKPLTSKQFIKFLQK 903 >gi|212637440|ref|YP_002313965.1| sensory box protein [Shewanella piezotolerans WP3] gi|212558924|gb|ACJ31378.1| Sensory box protein [Shewanella piezotolerans WP3] Length = 1497 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 136/569 (23%), Positives = 273/569 (47%), Gaps = 13/569 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + D + A + + V +D T ILG S ++ G + + + Sbjct: 924 QRQLKDDVYLLAQAFENTTEAVLIYDRDELIQVTNKAAQDILGYKSSTLIGQSFSEV-LL 982 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + +L + E V A+++ + + + + N+NG+ Y+ + Sbjct: 983 GKESGTHIADLLQHGLS-----WTGECTVACANDKQCVVWLNVSSILNTNGEATHYVVVF 1037 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT++K++ + A D LTG+PNR F +L+ + + + + ++ +D+D++ Sbjct: 1038 SDITDRKRTEADLRRLANYDVLTGLPNRSLFSSKLSQSIYQAEKEGG-KLALLFLDLDRF 1096 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV + R+ + ++L R G+ F I+L + I Sbjct: 1097 KHVNDSYGHSMGDALLVEASNRLQTFISQENVLCRFGGDEFVILLRDDIYIDSINRLCEQ 1156 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + SI P +L RE ++ SIG + W ++KNA+LAMYHAK G + + + Sbjct: 1157 LLASIQQPFDLYGREFYISTSIGVSLWPEDAKQPETLIKNADLAMYHAKDEGKGNFKYYS 1216 Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753 + ++ DL A+E E L + P I + ++++VG+EAL++W+HP+ G + Sbjct: 1217 QDRNAEALYHLRLEADLRKAIERDEFELHFQPQIDILQNDKLVGVEALLRWNHPQDGYVR 1276 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 + F+ +AE +I I+ +++ R W Q P+ + +NI++ ++ +G Sbjct: 1277 TDIFIKVAEACGLIVEIDRWVMREACRHGARW-AQTLTEPLEVSVNISALHFRQHDFIQG 1335 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ +++T + L +E V+M + ++ L L+ +G+ + +DDFGT S L+YL Sbjct: 1336 VEKCLAETGMPNHALSLEITEGVLMKELKVAKQHLKELKALGVDVAIDDFGTGYSSLAYL 1395 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + +T+K + S + AI SII +A+N++ ++A+ + ++++ G Sbjct: 1396 RHFEVNTLKIDRSFLIDIATNKADQAIASSIIELARNLKLDVVAEGVETHEQLEQVFSRG 1455 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLV 960 C IQ + A P+ + + R L Sbjct: 1456 CYVIQGYYFAKPMSSADLEVYMATRADLS 1484 Score = 99.6 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 7/176 (3%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + ++ G++LI + + + V+A + + R A+ GS +W+ Sbjct: 764 WWQTSWFKGLMLIGVLLIGLAVILIRQRQVMAFRAINSALSDSENRLKQALKGSDSELWE 823 Query: 421 WDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 W + D + + GL ++ ++ IH D+ N + R R Sbjct: 824 WLLETDVF----RLENVGGLLSAKDSQVYLKIGEIPIHNEDKSNVLIAWKDMLEERVDRF 879 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKKSLEGILCNA 533 + E+R +DN + W+ + RP+ + NG+I R GI DITEQ++ + + A Sbjct: 880 EVEYRYLRSDNSWGWIRVLGRPVERNRINGEIERVAGIYTDITEQRQLKDDVYLLA 935 >gi|309778800|ref|ZP_07673573.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] gi|308922508|gb|EFP68132.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] Length = 883 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 139/580 (23%), Positives = 264/580 (45%), Gaps = 11/580 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + +G+ ER LA+ + V IL + G + G Sbjct: 297 AIQKDNVERGLAESEERYRLAISNLHEGVVIMSPDGVVQAANASAERILRVRPGQLVGRN 356 Query: 450 R-NWLPYIHINDRDNFRTILDS---FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-N 504 R + + + + + + + + + W+ I P+ + Sbjct: 357 RLDPIQRVVDEHGKEVGSTMMPSGLVLRTGEPIFGRVYGLLLKTGELMWVRQNIIPIRRH 416 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + DIT+ K++ + + A D LTG+ NR F+ L + ++ + D++ Sbjct: 417 AEPTPSSVMLSFADITDIKRAEQRLRHLAAHDALTGLTNRSFFIAHLESAIESA-RDESR 475 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + +D+D++K +ND G A GD +L S R+ + + D++ARL G+ F I++ Sbjct: 476 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQR 535 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 +IA A + +++ P + + + SIG A + I+ S++L++A+ AMY A Sbjct: 536 VEGKRIALLAERLLQAMREPFDTVNGRYYLGVSIGVALYPHDGISGSDLLRSADAAMYRA 595 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + + + ++ L A EN+EL LVY P L IVG EAL+ Sbjct: 596 KQNGRNRAQFYTAELNARLQRRYMLENALRDARENNELQLVYQPKYDLASHRIVGAEALL 655 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+ K G IS EF+ +AEE +I I ++L R + W + + +N+++ Sbjct: 656 RWNSAKLGAISPVEFIPVAEETGLIVPIGAWVLRRACEQAVIWYEALGY-DFRMAVNLSA 714 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ ++ ++ + P+ +++ +ES++MG + R + L GI +++DD Sbjct: 715 RQFQAGDVVPMIEQTLADSGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 774 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P VK + S +TG +A+ +I+ MA+ + T+ A+ + Sbjct: 775 FGTGYSSLSYLQRFPISNVKIDRSFITGIPGDPDSVALTEAIVAMARALGMTVTAEGVED 834 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++ L + GC IQ ++ P+ +LL+ +V Sbjct: 835 ADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLSVV 874 Score = 47.3 bits (111), Expect = 0.015, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 7/122 (5%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 S D V + V P A +LG + G IH +D L V Sbjct: 16 SSDAVLLT-VDGRLVQANPAAARLLGAQDPAQLAG--LQLAGLIHPDDVAQVVPRLAGMV 72 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 E R+ AD + G + + ++ + +LE Sbjct: 73 SSGVSAQPVEHRLVRADYTHVLVASEAAA-CEHEGQPAVMLVLREAVS--RHALERHAVQ 129 Query: 533 AF 534 A Sbjct: 130 AR 131 >gi|317153412|ref|YP_004121460.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] gi|316943663|gb|ADU62714.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2] Length = 711 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 137/571 (23%), Positives = 266/571 (46%), Gaps = 13/571 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHG 447 V + + + +R + + D W+ + +P I G Sbjct: 143 VAELEASREALLNSEQRYRMVADYNYD--WESWIGPDGKAIYISPSCERITGYPPDRFIE 200 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +H +D + + L ++R+ + + W+ + +++ G Sbjct: 201 DPDLMQRIVHRDDIHIWHNYMADTSSGDDDGL--DYRIHHRNARTKWVSLIKHAVADEAG 258 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + L D+T +K+ + + ++ D LTG+PNR LDRL+ ++ SA D+ Sbjct: 259 NPLGVRVSVRDVTHRKRMEQQLKHSSLHDPLTGLPNRALLLDRLSQAVERSARTDDY-FG 317 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ I++D+++ +ND G +GD +LV + R+ +++ D +AR G+ F +++ Sbjct: 318 VLFINLDRFQAVNDHFGHVMGDRLLVEIGVRLSRVVRPVDSVARFGGDDFVVLIEEMPRK 377 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + + D +R S P + + +TAS+G + + ++ NA+LAMY AK Sbjct: 378 IDMRDMVRIIRDSFKEPFEVNGTDFPITASMGLEIARA-ESDPESLVHNAQLAMYKAKES 436 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + + + + ++ DL A+ E + PI+ L D ++ G EAL +W+ Sbjct: 437 GKDRYLVYDARMREGVVNVLAVENDLKRALRAHEFEAHFQPIVNLSDGQLYGFEALARWN 496 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKD 804 HP+ G +S EF+ +AEE +I + +LE + WR + + + +NI++K Sbjct: 497 HPQRGLVSPGEFIPVAEETGLIVELGAHILEYACTTLSQWRSRYPGAGNLVMAVNISAKQ 556 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + +L ++ +++++ P +KL +E+VVM + S + L L+ +G+ L++DDFG Sbjct: 557 FGEAKLVTSVKDILARSGLPPGLLKLEITETVVMLDAMESSVRLNLLKSLGVKLSVDDFG 616 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S +SYL P D +K + S + + I I+R+I+ MA ++ ++A+ I E Sbjct: 617 TGYSSMSYLQKFPVDQLKIDLSFVRLMEKGPENIEIIRAIVNMAHSLRLRVVAEGIETER 676 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L + CDY Q + PL + L Sbjct: 677 QRDLLYSLQCDYGQGYLYSKPLPRDEAEAFL 707 >gi|229199424|ref|ZP_04326088.1| Sensory box/GGDEF [Bacillus cereus m1293] gi|228584052|gb|EEK42206.1| Sensory box/GGDEF [Bacillus cereus m1293] Length = 887 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 165/870 (18%), Positives = 346/870 (39%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 30 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 84 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 85 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 138 Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274 + + + + L L+ + + ++ + L+ Y + Sbjct: 139 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 198 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + + Sbjct: 199 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQVLLTPKFGEAIRLSLPYISV 258 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 259 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 318 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 319 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP 378 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 379 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 433 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR++F + + S + VM Sbjct: 434 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 492 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + Sbjct: 493 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 552 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G Sbjct: 553 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 612 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 613 NGSSLYTKELYKKTERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHP 672 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L R + W + I +N+++K+ Sbjct: 673 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 731 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 N L E + +I+ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 732 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 791 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 792 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 851 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL + +K L++ Sbjct: 852 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 881 >gi|297530367|ref|YP_003671642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. C56-T3] gi|297253619|gb|ADI27065.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. C56-T3] Length = 705 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 148/576 (25%), Positives = 265/576 (46%), Gaps = 16/576 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V++ + R L V S D V + R+ P Sbjct: 135 LCVLRRQAEESGLQARLAEAERRLQLIVEHSNDYVLIFSPNRELSYIPPSWKRKTN---K 191 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + L ++H +D L + EFR + ++ WM + + + Sbjct: 192 RLPVSYEEVLTFVHPDDAPVVAQKLAELYDTYETQ-SAEFRKQGEKGEWVWMEAQGKAII 250 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G + I +I+E+K+ E + A+ D+LTGI NR F + ++ Sbjct: 251 DEAGTLDCVIVTVKNISERKRYEEKLRQLAYFDSLTGIANRSYFERHIHELIA-----SQ 305 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D DK+K IND GD L +R+ L+ D AR+ G+ F ++L + Sbjct: 306 TPFALCYLDFDKFKWINDHFSHQAGDYFLREAVKRVERALRPGDFFARIGGDEFVLLLPN 365 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + S P ++ I T SIG A + +++K A+ A+Y Sbjct: 366 ITKTE-MTALAERLVSSFHEPFYYEKQLIQSTLSIGIAFFPKDSDRIEQVMKYADQALYE 424 Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 K RG N +R + R I++DL A+ +LYL Y P ++L + +G+EAL++ Sbjct: 425 VKERGRNGYAFYRPTEHRQAV--IEQDLPFAIMRGQLYLCYQPKVQLAKGKAMGVEALLR 482 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G+I +F+ +AEE I I L++LE+ R + W + P + + +N++ Sbjct: 483 WRHPSLGDIPPLDFIPLAEESGFIFEITLWVLEQACRQVKEWEKKF--PGLKLAVNLSPF 540 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L EL E ++ ++ +T +P+R+ L +ES +M N E R +L L+++G+ +DDF Sbjct: 541 LLNRPELIEHVKRVLRETGLAPNRLILEVTESGLMENIETGRHILTELQRLGVQAAIDDF 600 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+Y+ +P +K + S + G E I+ +II +AK+++ ++A+ + E Sbjct: 601 GTGFSSLAYIRNLPVSLLKIDRSFIQGIAENSKDATIVDTIIHLAKSLDIEVLAEGVETE 660 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L++M CDY Q + + L + + L+E Sbjct: 661 PQVALLSQMHCDYAQGFYFSRSLEAKKLQQWLEEYN 696 >gi|150017914|ref|YP_001310168.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium beijerinckii NCIMB 8052] gi|149904379|gb|ABR35212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium beijerinckii NCIMB 8052] Length = 584 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 153/555 (27%), Positives = 275/555 (49%), Gaps = 5/555 (0%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 ++ A+ + VW+W+I D + I G S I DR++ Sbjct: 31 LKKYKQAIDEANIAVWEWNIKEDSFFISDAWEEITGYNSKDFSSLIDCIEKVAISKDRED 90 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 T L+ FV + EFR+ DN+ W++ + + + + R G+ NDITE+K Sbjct: 91 ALTDLNFFVADKVTLYVSEFRIITKDNKLKWVLFKGNGIKEKDEGVTRIFGLVNDITEEK 150 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + +GI N + D+LT +PNR FL + ILD + ++ ID+D +K IND L Sbjct: 151 EREKGIADNLYHDSLTNLPNRDMFLMDIKNILDKNIQLSQ-EGAIIFIDLDNFKSINDTL 209 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L ++ + +K L R+ G+ F +I+ N+ K+ D + K Sbjct: 210 GHDYGDLMLKVFSQLLHVCIKDYGKLYRVGGDEFIVIIEKVNSIEKVKDMCNTILKYCKN 269 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P L E + +T S+G + + +++LK A+LAMY +K G N F + R Sbjct: 270 PFELNENHLYITTSMGISIFPRDSNNMNDLLKFADLAMYKSKADGKNTYTFFEQALSRLY 329 Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I + +L A++ +E +VY P I +D ++V EAL++W+ K G +S +EF+ IA Sbjct: 330 TRRIIIENELKEAIKKNEFSIVYQPQIDALDNKVVAFEALLRWNSKKLGFVSPAEFIPIA 389 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E + +I I ++ E+ R I +++ I IN++ + + + + + + Sbjct: 390 ERIGIIVDIGDWVFEKACRKIRELKERKYEFN-NICINVSPVQIKERDFKDKIIKTCEEN 448 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 S I++ +ES ++ + L L K GI++++DDFGT S LSYL +P +T+ Sbjct: 449 KIPLSLIEIEITESTLIELDDEKIADLHELIKKGINISIDDFGTGYSSLSYLTILPINTL 508 Query: 882 KFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 K + S + +K A++ I+ ++K+++ +IA+ + + + EL +GC+ IQ + Sbjct: 509 KIDKSFIDNIRNDKNRAVIECILSLSKSLKYKVIAEGVEVKEQLNELMNLGCNIIQGYYF 568 Query: 941 ASPLGFNSILKLLKE 955 + P+ + K+LK Sbjct: 569 SKPVCEEELEKMLKN 583 >gi|27375993|ref|NP_767522.1| hypothetical protein bll0882 [Bradyrhizobium japonicum USDA 110] gi|27349132|dbj|BAC46147.1| bll0882 [Bradyrhizobium japonicum USDA 110] Length = 1043 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 140/574 (24%), Positives = 258/574 (44%), Gaps = 14/574 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 I+ + Q + + + D R + L A Sbjct: 466 VATIEDITERRNLEQERDRNHTFLREIIDHIPSRITVKDAHTRRYLLANEVAEEQLVTAP 525 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++ G + + D + G E ++ + Sbjct: 526 ETIVGKTA--FDLYPTDAAEIITRDDDKLLQSPDGLFLDEHIWSTPTIGRRYITSTRIGI 583 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + +G+ I + D+TE++++ E I A D LT +PNR F +++ L + D Sbjct: 584 RDKSGEPRYIINVVEDVTERRRAHEKIAHMAHYDALTDLPNRTLFREQIEREL--AKVAD 641 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + ++ ID+D++K IND LG VGD++L ++ R+ LK D++ARL G+ F +I Sbjct: 642 GGQFALLYIDVDEFKGINDSLGHHVGDELLKAIATRLRGCLKKSDLIARLGGDEFAVIQT 701 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + F + ++I P + L +++ ASIG A +++KNA+LAMY Sbjct: 702 GIQSRADVLSFVTRIYEAIRQPYHCLGHQLSTDASIGIALAPQDGNDLDQLIKNADLAMY 761 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G F R+ +++DL A+ N + Y P++ L E+ G EA Sbjct: 762 GAKAEGRRTHRFFEPEMDACAKARLTMEQDLRQALVNGGFEIHYQPLVDLRSGEVSGCEA 821 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G IS +EF+ IAE+ +I + ++L + +W + + +N+ Sbjct: 822 LLRWRHPERGGISPAEFIPIAEDTGLINELGDWVLRMACNEAATWPAH-----VRVAVNV 876 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L + L + ++ + P R++L +E+V++ + E + +L +LR IG+ + L Sbjct: 877 SPVQLKCDTLALRIAGALAASGLDPRRLELEITEAVLIRDDEAALAILHQLRAIGVRIAL 936 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL PFD +K + + E A I+++++ +A T +A+ + Sbjct: 937 DDFGTGYSSLSYLKRFPFDKIKIDRCFVADIAETSGAPVIVQAVVNIAAASHMTTVAEGV 996 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 E + L +GC +Q ++P + + KL Sbjct: 997 ETEAQRELLRALGCTEMQGYLFSAPKPASEVRKL 1030 Score = 59.2 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 3/185 (1%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 ++I R + V+I +++ + Q +GI ++ Sbjct: 301 LVIVATNTTAAALADWRQQTGFMVTTAALSAVVIALILFLIIRQINRQNREAQEGIEAER 360 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 R A+ + +D VT A + GL+ + H +RD F Sbjct: 361 LRLDTALNNMSQGLILYDAAGYIVTCNRRYADMFGLSHDVIKPGCHIREAMYHRKERDAF 420 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 ++ F R E V R + N+ ++ DITE++ Sbjct: 421 DGDVEEFCD-DVMRTVAEGTVSTR--THQIANGRAFQVINTPLAQGGWVATIEDITERRN 477 Query: 525 SLEGI 529 + Sbjct: 478 LEQER 482 >gi|74317060|ref|YP_314800.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74056555|gb|AAZ96995.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s) [Thiobacillus denitrificans ATCC 25259] Length = 1059 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 138/584 (23%), Positives = 245/584 (41%), Gaps = 18/584 (3%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 I + +A Q + RQ+ + + D + + + Sbjct: 467 AFITSTLQIFASRVAAELERQSADAHIRRQASLLDKAQDAIMVRGLDDAIRYWNKGAERL 526 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + + G L Y D FR + + E D + Sbjct: 527 YGWKADEVTGRSTEMLLY---GDPTAFRENTRKVIAH--SEWNGEITQLRKDGTALVVEA 581 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + N + I ++TE+K + + AF D LTG+PNR+ DRL + Sbjct: 582 HWTLLRDENDQPDAILAINTNVTERKAAEHKVHQLAFYDPLTGLPNRELLGDRLQHAM-- 639 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 +++ID+D +K +ND LG A+GD +L + +R+ L+ D LAR+ G+ F Sbjct: 640 -QVRHGQVGALLLIDLDNFKTLNDTLGHAMGDLLLQQIAQRLQTCLRKGDTLARVGGDEF 698 Query: 618 GIILISEN-NSLKIADFAIA----MRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 I+L + + A + S A P L + TASIG + T E Sbjct: 699 VIVLEGLSASPGDAGSLATRVGEKILASFARPFQLADYVHHCTASIGITLFNDRPTTLDE 758 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730 + K A+LAMY AK G N + F + ++ DL A+ L Y + Sbjct: 759 LRKRADLAMYQAKAHGRNALRFFDPAMQAVVAARAELEVDLREALRLGAFELHYQAQVDA 818 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 + G EAL++W HP+ G I+ + F+ +AEE +I + L++L+ +++W + Sbjct: 819 R-GCVSGAEALLRWQHPQRGWIAPASFIPLAEETGLILPLGLWVLDVACAQLVAWSKMPH 877 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 M + + +N++++ + + A I ++ P R+KL +ES+++ N + + L + Sbjct: 878 MARLSLAVNVSARQFRQADFAAQVLAAIERSGADPRRLKLELTESLMLDNLDDTILKMSA 937 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKN 908 L+ GI +LDDFGT S L+YL +P D +K + S + +I RSI+ + ++ Sbjct: 938 LKAHGIGFSLDDFGTGYSSLAYLKRLPLDEIKIDQSFVRDVLIDANDASIARSILALGQS 997 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + ++A+ + + L GC Q P Sbjct: 998 LNLEVVAEGVETDAQHAFLAEHGCQAYQGYLFNRPQPARQFEAW 1041 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 20/146 (13%) Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFR 484 V I G + G + +H + DR R I ++ R ++ E Sbjct: 55 IVFVNDAFEHITGYRRDEVLGKS---VRLLHGPLTDRAEVRRIGEALENQR--PVRSELV 109 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 + + W+ + + P++++NG + + D+T +K++ + NR Sbjct: 110 NYSKHGEPFWLELDVVPVTDANGYYTHCVAVERDVTRRKEADLELARL----------NR 159 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMV 570 R+ + + + T ++ Sbjct: 160 AL---RVRSACNKALTRATDEGELLH 182 >gi|95930562|ref|ZP_01313297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95133397|gb|EAT15061.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 868 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 145/597 (24%), Positives = 274/597 (45%), Gaps = 14/597 (2%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 AL+ G VL++ L+ T + ++ + +R S ++++ + Sbjct: 272 WLRALISGAVLLLFLLIITALL-RWQVRRKTEELRRFKQRFEYLQKASPVVLFNLALPTG 330 Query: 427 R----VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 R + + +I + G + W IH D + S + G E Sbjct: 331 RAPEVLWVSDNITRLFGFTPEQTY-QPGWWQSIIHPGDLQQLEANMRSM--PKIGHGSVE 387 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 +R+ D ++ ++ + + + +G NDIT ++ + + D LT +P Sbjct: 388 YRLYDNDGTLRYVREELQFLPATATSPAQVVGSWNDITTSREQQDQLSFLTHYDPLTQLP 447 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR +L L + ++ +D+D +KKIN+ G GD +L R+ L Sbjct: 448 NRTLLHLQLQDALAHI-ETGQDQLAILNLDLDHFKKINETFGFDFGDKILRQTAGRLKHL 506 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L+ D +AR+ + F II+ EN + + + + + P+N+ ++E+ VT S+G + Sbjct: 507 LRLEDSIARMGADEFVIIIQGENIAELASSISRRILHRLGTPLNIEDQELIVTTSVGISL 566 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSEL 720 + +LKNAE+A Y AK +G N + F + ++++ L A+E EL Sbjct: 567 FPEDGADPETLLKNAEIARYAAKRQGRNRLHFFSSQLSDNVRENLVMESALRNAIERKEL 626 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P + L ++VG+EAL++W P+ G + F+ +AEE+ +I I L++LE R Sbjct: 627 VLHYQPQLDLNSGDLVGVEALVRWQRPEIGLVPPGLFIPLAEEIGLINDIGLWVLEEACR 686 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 I W Q P + +N+A + + L + + ++ T R++L +ES +M Sbjct: 687 QTIDWDRQGYHVP-RMAVNLAVQQIESGHLPQQVLQILQYTGLPAQRLELEVTESAIMIE 745 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAI 898 P+++ L + +GI L +DDFGT S L+YL +P D +K + S + I Sbjct: 746 PKKAADALLEFQSMGIRLAIDDFGTGYSSLAYLKRLPLDRLKIDRSFVMDIGTNAGDDII 805 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 R+II ++ ++ +A+ I ++ L R GC+ Q + PL ++++ + + Sbjct: 806 SRAIINLSNSLGMDTVAEGIENTDQLEFLRREGCEIGQGYLFSKPLPADAVMAFMDK 862 >gi|330502907|ref|YP_004379776.1| sensory box protein [Pseudomonas mendocina NK-01] gi|328917193|gb|AEB58024.1| sensory box protein [Pseudomonas mendocina NK-01] Length = 1095 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 144/587 (24%), Positives = 264/587 (44%), Gaps = 20/587 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442 + + Q + + E+ + A S D + + + + G + Sbjct: 515 VGTLVDISERLMREQRVRASEEKFAKAFHSSPDAITITERDSARYIEVNEGFTRLTGYSP 574 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G + ++R L L E + + + + ++P Sbjct: 575 DEVVGRTAFEMDIWAFPDERQQLLEQLAR----NGQVLHLEMHGKHRSGEVRLVDVSVQP 630 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + +G + A DI+E K++ + A+ D LT +PNR +DRLT + L Sbjct: 631 I-ELDGVPC-LLLTARDISELKQAQAQVQHLAYHDALTNLPNRALLMDRLTQQISLLKRH 688 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 D LR ++ +D+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F ++L Sbjct: 689 D-LRGALLFLDLDHFKHINDSLGHPVGDSVLRLVTARLEASVRLEDTVARLGGDEFVVLL 747 Query: 622 ISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 + A +R+ +A P+ L + VT SIG A T +++LK Sbjct: 748 SGLEGKRSEVTRHVRQVADKLRQLLAEPMLLDGHRLQVTPSIGVALIPDHGNTPADLLKR 807 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N ++ FR + S R+ ++ DL LA+ E L + P + D + Sbjct: 808 ADIALYRAKDSGRNAIQLFRTTMQDAASARLRLENDLRLALARGEFELHFQPQVDARDGK 867 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792 +VG EAL++W HP+ G S + F+ + EE +I + ++L Sbjct: 868 VVGAEALLRWQHPQLGPQSPAHFIQVLEESGLIVEVGGWVLAEACHFCSQLLTGGLVDSE 927 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + ++ E + + + + + +KL +E +V+ N + + + RL+ Sbjct: 928 RFSLCVNISPRQFRQHDFVERVASCLRDSQLPNAMLKLEITEGIVIQNIDDTVGKMLRLK 987 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 K G+S +DDFGT S L+YL +P D +K + S + + I+R+I+ MA+++ Sbjct: 988 KHGVSFAMDDFGTGYSSLTYLKRLPVDMLKIDQSFVRDATNDPNDAEIIRAIVAMARSLG 1047 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +IA+ + + ++ L GC Q + PL + LL + Sbjct: 1048 LALIAEGVEQQDQLEFLQSQGCHLYQGYLFSKPLPQEAFHDLLSMQN 1094 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 20/207 (9%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIG-----------FTVIQHVLATGYFSQGIF 401 L A T RLDN ++ G V +L G ++++ Q + Sbjct: 344 MLEAARTGRLDNLEVRLFSRDGSVTSNLLFGGEIELNGTTCLVLTVRNITEQRAQEQALN 403 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 +R LA+ + WDW I R+ + + + GL + + G ++ + + DR Sbjct: 404 ESKQRLRLALESADLGTWDWHIPSSRLIASARASQLQGLDAATFEGAFLDFFRKVPMEDR 463 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 N R V RR Q +RV + ++ + + G LR +G DI+E Sbjct: 464 HNLRQSYQRLVQERRSHYQVTYRVHLENGGLRYLESTAKLQLDEAGQPLRMVGTLVDISE 523 Query: 522 ------QKKSLEGILCNAFQ---DNLT 539 + ++ E AF D +T Sbjct: 524 RLMREQRVRASEEKFAKAFHSSPDAIT 550 Score = 97.7 bits (242), Expect = 9e-18, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 24/193 (12%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + D R A+ G+ W WDI +V + + GL +++ I Sbjct: 23 EQTWQDAPRLLAALNGAHLGTWYWDIRSGQVNWSRGAQALFGLDPNRPVTRELHYIELIP 82 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +R ++ + + R+R D HW+ I ++G R G+ Sbjct: 83 EEERAEVLATFEAILKGEQISNALRHRIRWPDGSLHWLEITGSLQREADGRP-RMFGVIR 141 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI+ Q++ E + ++ +R ++ LS +M++ D + Sbjct: 142 DISAQQERAEAL---------------RASEERFASLFRLSPD------IMMLVRYDNSE 180 Query: 578 --KINDVLGIAVG 588 ++N A G Sbjct: 181 IVEVNQHFTHAFG 193 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 41/149 (27%), Gaps = 15/149 (10%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 + + E+ + A + + D V D R + P G +S Sbjct: 262 LCTFLDTSERKRAENALRASEEKFAKAFMHTPDAVAITDRETGRFIEVNPSFERQFGWSS 321 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G L DR L++ R E R+ + D Sbjct: 322 MEAVGHTSLELGIWADPRDRQRM---LEAARTGRLD--NLEVRLFSRDGSV-----TSNL 371 Query: 502 MSNSNGDILR---YIGIANDITEQKKSLE 527 + ++ + +ITEQ+ + Sbjct: 372 LFGGEIELNGTTCLVLTVRNITEQRAQEQ 400 Score = 47.6 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 10/146 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV--WDWDIVRDRVTTTPDIATILGLA 441 F VI+ + A ++ + + ER + S DI+ +D + V G Sbjct: 137 FGVIRDISAQQERAEALRASEERFASLFRLSPDIMMLVRYD-NSEIVEVNQHFTHAFGWN 195 Query: 442 SGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + G + L +H + RD L R + E ++R ++ + Sbjct: 196 ASDILGRPTHELNLWVHASQRDQ----LRQQAPLSREPVIQEVQLRTRAGDILDGVLSSQ 251 Query: 501 PMSNSNGDILRYIGIANDITEQKKSL 526 + + + D +E+K++ Sbjct: 252 YIELQGDRL--MLCTFLDTSERKRAE 275 >gi|289626596|ref|ZP_06459550.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330867964|gb|EGH02673.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 642 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 153/635 (24%), Positives = 290/635 (45%), Gaps = 20/635 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394 + + + + + L I + Q VL+ +++ F ++ ++ Sbjct: 14 LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSVVMIFIARDRLRSLIGGD 73 Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 Q +D +R LA + + V D V I G + + G Sbjct: 74 ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H + ++ + S + G+ E R + + IR + +G Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + +DIT K+S + + D LT +PNR DR++ L + +++ Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSA-RASKCGCALLL 248 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND LG VGDDVL ++ R+ + LAR G+ F +++ + + ++ Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + ++ P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368 Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + RV + +L A+E +L + Y P+ L+ I G+EAL++W HP+ Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAIELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ IAE+ +I I+ ++L+ + +W + +P F+ +N++S+ Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + + +T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT S Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L L +P +K + + G + IAI+R++I +A ++ ++A+ I Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 L GC Q A P+ + P+ K Sbjct: 608 LLGNGCQLGQGYWFARPM-VAQAIDW--THAPVFK 639 >gi|300696950|ref|YP_003747611.1| modulator of Rnase II stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum CFBP2957] gi|299073674|emb|CBJ53194.1| putative modulator of Rnase II stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum CFBP2957] Length = 589 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 152/568 (26%), Positives = 263/568 (46%), Gaps = 24/568 (4%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 V + + D R P A +LG++ ++ G I++ D +D Sbjct: 10 MVNALTEGLLVCDAQRRVTYANPSAARLLGVSLDTLVGLRLPEAVGAAIDEFDTPIRDID 69 Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL-------------RY 512 + R +L F +R D + W+ P+ G+ Sbjct: 70 WPDGDVLADGRPQLNQIFGLRCLDGRTVWVSTNWTPLYAEAGEPATASPAGRHAQQPYAV 129 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + DIT+ +++ + I A D LTG+ NR + DRL L L+ + R +VM +D Sbjct: 130 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-GTRVSVMFLD 188 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K IND LG GD +L + R+ + D +ARL G+ F ++L S + + Sbjct: 189 LDRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGMGTRR 247 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + +I P ++ +E+ V SIG A + +L+ A+ AMY AK RG N+ Sbjct: 248 VAERILAAIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 307 Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 ++F S R I+ L A + +E Y Y P + + IVG+EALI+W+ +G Sbjct: 308 QTFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSADFG 367 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ AEE +I I+ ++L + WR +P + + IN++ + +L Sbjct: 368 RLMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPDLRMSINLSGQAFSSGQL 426 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 ++ ++ + ++L +E +++ + LL LR +G+SL LDDFGT S L Sbjct: 427 SGMVRGALTNSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSL 486 Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL P DT+K + S + +R AI R+II MA+ + +A+ + ++ L Sbjct: 487 SYLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLR 546 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD Q + PL ++ L++E Sbjct: 547 EIGCDEYQGYLLTRPLEPAAMHDLVREH 574 >gi|254383498|ref|ZP_04998849.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194342394|gb|EDX23360.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 709 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 135/570 (23%), Positives = 248/570 (43%), Gaps = 15/570 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIR 450 A Q + + R G+ + D+ + + + + G L + Sbjct: 137 ARTDAQQALHASEARFRAVFEGAAIGIGIADLDGNVLEVNDTLLQMFGGLDGHVRSRNVS 196 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W H +D + + V R + E D W + + + ++ G Sbjct: 197 EWG---HPDDTPHVWQMYAELVRGEREHYRVEKPYYRHDGTVLWTNLTVSLLRDAEGRPQ 253 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + + D TE++ + A D LTG+PNR F +RL L + + Sbjct: 254 YQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALGGA---GGKHFGLCY 310 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLK 629 +D+D +K +ND LG + GD +LV + R+ +++ARL G+ F + + K Sbjct: 311 LDLDGFKAVNDSLGHSAGDRLLVEVADRLQSCATGPGEVVARLGGDEFVALTTGSDTDEK 370 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A+ + +++ PI L RE++V SIG + + T +E+L++A++ MY AK GG Sbjct: 371 ATELAVRILSALSTPIRLDGRELSVRGSIGIVEGPAGERTPAEVLRSADITMYRAKAAGG 430 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N E + + L A+E E ++ Y P++ L D + G EAL++W HP Sbjct: 431 NRFEFADAEADARAITRHGLTNALPAALERGEFFIEYQPLVHLHDGSVHGAEALVRWSHP 490 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 ++G + F+ +AE +I + ++LE R +W+ Q + + +N++ L Sbjct: 491 QYGVLGPDRFIPLAERTGLIVPLGRWVLEEAVRQARNWQRQHGCSALRVNVNLSPTQLHH 550 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L A++ + +P + L +ES ++G + L RL +G+ + LDDFGT Sbjct: 551 PGLVADTVAVLENSGLAPGALCLEVTESALIGADDELLEPLRRLAALGVDIALDDFGTGY 610 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 S L+ L +P +K + S G + I+ I+ +A ++E + + + Sbjct: 611 SNLANLRRLPVSVLKLDRSFTQGMQQQPADPVDVKIVEGIVALAHSLELAVTVEGVETGA 670 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952 +L +GCD Q + A P + I L Sbjct: 671 QAAQLRELGCDTAQGWYYARPGAPDRIHTL 700 >gi|149187425|ref|ZP_01865723.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1] gi|148838961|gb|EDL55900.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1] Length = 698 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 145/605 (23%), Positives = 265/605 (43%), Gaps = 20/605 (3%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412 + IQ + +I + T + V + IF++ + Sbjct: 107 AYGHDVWLETIKSPIQQPDGELIGVIGMTRNVTRRKQVEVRLSITSEIFNNFQ------- 159 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + + D + + + G + + G +L H +D F L + Sbjct: 160 ---EGMMITDQNGKILDVNSAFSEVTGYQAIEVIGKNPRFLQSGHHDD--KFYQNLWQQL 214 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G + EF R D + + I +++ +L YI + DI++QK E + Sbjct: 215 SE-TGLWKGEFINRKKDGSIYPQMATISTINDDGNSLLHYICVFEDISKQKAHEEKLRKM 273 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 AF D LT +PNR L ++ + + +D+D +K IND G GD +L Sbjct: 274 AFFDPLTNLPNRSHLTSILEQSIEGGQRHSE-QFATLFLDLDHFKHINDSKGHLYGDRLL 332 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE- 651 + R+ ++L + R+ G+ F IIL ++ ++ D P L +E Sbjct: 333 SQVADRLTDVLHHRASIGRIGGDEFVIILTDYDSEAQLLDTIDETLGVFNRPFELDSQES 392 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKE 709 + V+ SIG A + S +LKNA+ AMY AK G N + V ++ Sbjct: 393 LRVSGSIGVALYPQDGQNSETLLKNADTAMYLAKKNGRNGYAFYSPDLTYSSVLHVRVQS 452 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L AVE +L LVY P L + ++G+EAL++W+HP+ G I+ ++F+ IAE+ +I+ Sbjct: 453 ALHDAVEKQQLSLVYQPQYDLANNTLIGVEALLRWNHPELGVIAPAQFIPIAEKTGLIQR 512 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I +++ W DQ I +N++ L ++ + T + R++ Sbjct: 513 IGAWVIREACEQGRRWLDQGIEFG-KIAVNVSGLQLQHPNFVTKLKQKLLDTNFPAERLE 571 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 + +ES ++ + + + L ++R++GI ++LDDFGT S LSYL +P +K + S + Sbjct: 572 IEITESFLLIDHQLAVDTLNQIRELGIEISLDDFGTGYSSLSYLKGLPISKLKIDRSFIC 631 Query: 890 GSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 + AI+++II M + + I+A+ + ++ L GC+Y Q + P+ + Sbjct: 632 DVPDENDSNAIVQAIIVMGETLSLKIVAEGVENGDQVEYLRSHGCEYGQGYVFSKPVTAD 691 Query: 948 SILKL 952 + L Sbjct: 692 QLALL 696 Score = 59.2 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 5/122 (4%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 ++ A+ D VW D R + + + L + G + + Sbjct: 27 SLQQFIDALD---DHVWVKDSDRKYIAVNKSVESAWNLPRSEIFGKTD--FELFSKSRSE 81 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 +++ D + E R A W+ P+ +G+++ IG+ ++T + Sbjct: 82 HYQKADDRVIDSGAQETVEECASRDAYGHDVWLETIKSPIQQPDGELIGVIGMTRNVTRR 141 Query: 523 KK 524 K+ Sbjct: 142 KQ 143 >gi|237797916|ref|ZP_04586377.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020767|gb|EGI00824.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 643 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 152/633 (24%), Positives = 284/633 (44%), Gaps = 20/633 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394 + + + + L + I + I Q + G VL+ ++ F +++ Sbjct: 14 LYGVLSVLWFATADFLLPLFIVEPARLAIGQQMIGYGWVLLSAVMIFIARDRLMSIIGGK 73 Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + D ER LA + + V D V I G + + G Sbjct: 74 ALFERRQQDYERLLLAAVVFDSTREGVLVSDAQGRIVHVNRAFMDITGYQADEVLGFNPS 133 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H + +R + S V G+ E R + + IR + +G + Sbjct: 134 KFKSGRH--GPEFYRQMYHSLVS--AGQWSGEIWNRRKSGEIYPQWQTIRSVKGEDGQVR 189 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + +DIT K+S + + + D LT +PNR DR++ L + +++ Sbjct: 190 HFVAVFSDITAIKRSEQELAQLSHYDALTELPNRLLLTDRISQALTSA-RFSKRGCALLL 248 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D ++ IND LG VGD+VL + R+ + +ARL G+ F +++ + + Sbjct: 249 VDLDNFRNINDSLGHNVGDEVLKAAAERLKSVSDSEMTVARLGGDEFALLVKNCPQMVHA 308 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + + P + ++ V+ASIG + + +T ++L+NA+ A++ AK G + Sbjct: 309 AALAQQVIDAFKTPYAIAGHQLFVSASIGISLFPGDALTVEQLLRNADSALFKAKGDGRD 368 Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + RV + +L A+ +EL + Y P+ L I G+EAL++W HP Sbjct: 369 VFAFYTEELTAHAQQRVQLASELRQAIAQAELRVFYQPVHDLATRRICGVEALVRWQHPS 428 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ IAE+ +I I+ ++L R + +W + +P F+ +N++S+ Sbjct: 429 RGMVSPGEFIPIAEQSGLIVDIDAWVLNTACRQMKAWLAE-GVPIEFVAVNVSSRLFSRG 487 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + ++ T + ++L +ES VM NP+++ L RLR++G+SL +DDFGT S Sbjct: 488 DLDLQVAQVLRDTGLESAFLELEVTESAVMENPDQAIEQLHRLREMGLSLAIDDFGTGYS 547 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L L +P +K + + G IAI+R+II +A ++ ++A+ I Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPNDRDDIAIVRAIITLASSLGMRVLAEGIEEASQAAF 607 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 L C+ Q A P+ + P+ Sbjct: 608 LWENDCELGQGYWFARPM-VAQAIDW--AHAPV 637 >gi|89091836|ref|ZP_01164791.1| signal transduction protein containing membrane, EAL and GGDEF domains-like [Oceanospirillum sp. MED92] gi|89083571|gb|EAR62788.1| signal transduction protein containing membrane, EAL and GGDEF domains-like [Oceanospirillum sp. MED92] Length = 690 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 141/565 (24%), Positives = 267/565 (47%), Gaps = 10/565 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 L S + + AV +G V D I G + G Sbjct: 100 TLRNSSKSAQQARELKVFRNAVENTGSAVVITDPKGQIEYANQRFTEITGWNLEEIKGKR 159 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 N+L + ++ + + + +++ + + + +W + I P+ + G+I Sbjct: 160 PNFLRS-EKTTLETYKELWGTVLNHQQ--WRGTLLNKRKNGSTYWSLQNISPIHDELGNI 216 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + ++ ++ DI++ K+ + A+ D LT + NR+SF L LD ++ Sbjct: 217 INFVSVSEDISQIKEHDAQMEKMAYYDPLTNLGNRRSFRRTLDQYLDSPQEQG--LNALL 274 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++D+D +K+IND +G GD +L ++ R+ + + RL G+ F II + N+ Sbjct: 275 LLDLDHFKQINDTMGHEAGDALLTTIASRLNFCTRQRTSVFRLGGDEFTIIFRNCNDRTH 334 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + + + +A PI++ EI++T SIG +S++L+NA+LAMY+AK G Sbjct: 335 VIERTNEVLSLLAQPIHIGPHEISITVSIGITLIGLDSPDASDLLRNADLAMYYAKKSGR 394 Query: 690 NHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + + + I+ DL A++ ++L LVY P I + +I +EAL++WDHP Sbjct: 395 NTFAFYEQHMDEEAQRTLSIEHDLRSALDGNQLRLVYQPQISADNGKITAIEALLRWDHP 454 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G I EF+ AEE +I I +++ + + +D +PPI + +N++++ D Sbjct: 455 LDGPIPPDEFIPHAEETGLIIPIGRWVMAEACKAAKAIQD-LGLPPIKVCVNLSTRQFDD 513 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L ++ I + P ++L +ES++M + + +L +++ GISL +DDFGT Sbjct: 514 PALISHIEEAIETSGLDPRWLELEITESMLMRDMSTAIDILNSIKQKGISLAIDDFGTGY 573 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL +P D +K + S + +AI +II M K + +++A+ + + + Sbjct: 574 SSLSYLKKMPVDLLKIDRSFLQDIPSDRDNMAITSTIIAMTKQLGLSVVAEGVENQAQMA 633 Query: 926 ELTRMGCDYIQDSHVASPLGFNSIL 950 L R C +Q ++ P+ Sbjct: 634 FLNRNQCTLMQGYLISQPVSLTQFT 658 >gi|254474073|ref|ZP_05087465.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Pseudovibrio sp. JE062] gi|211956769|gb|EEA91977.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Pseudovibrio sp. JE062] Length = 728 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 132/578 (22%), Positives = 259/578 (44%), Gaps = 8/578 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 F + V + + E+ + + ++ + A L + Sbjct: 135 RFLEQELVNVEQQSKEALRDSREQLAQVIDSVPAMITTSTRDGLCAFSNAAWARFLNSTT 194 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + R+ R + R YE R I+ P+ Sbjct: 195 AELVG--EDTYGKFDKFTRERNRRLDRKVFITGRALPPYEIEQRNHAGDIFHFIVTKSPL 252 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 ++ G+ + A +I+++K++ +L A D LTG+PNR +R+ + + Sbjct: 253 LDAEGNTTHVVTTATNISDRKRAEAHLLHIAHHDALTGLPNRTMLGERIDEEIFQC-RNS 311 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + ID+D++K IND LG GD +L L R+ + D++ARL G+ F I+ Sbjct: 312 GRSFALHFIDLDRFKSINDALGHRTGDRLLEVLAERLLRCVDGSDLVARLGGDEFAILQT 371 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 +S + FA + + P ++ +E+ +AS+G + + S E+L+ A++AMY Sbjct: 372 DLKSSEEAMRFAQHLVSVVEEPFHISGKELQTSASVGITKYPEDGLNSEELLRCADMAMY 431 Query: 683 HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 +K GGN F ++ + V ++ +L A+E+ +L L Y P I L EIVG EA Sbjct: 432 QSKADGGNTFHLFSTKMDHHVKETVALEAELRNAIEHDQLELFYQPQIDLRTNEIVGAEA 491 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W+ P +G ++ + F+ AEE+ +I I +++ + W D P I +NI Sbjct: 492 LLRWNRPDYGVVAPNVFLGTAEEVGLILPIGEWVIFAACQQAKKWMDMGLETP-RIAVNI 550 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + + ++ + ++++ +E++V+ + + L +R++GI++++ Sbjct: 551 SPTQFRKQNVPQLLKDALVSCSLPADKLEIEITENIVLHGSDATVRDLREIREMGIAISI 610 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL D +K + I+++I+ + K+++ +IIA+ + Sbjct: 611 DDFGTGYSSLAYLSRYSVDCLKIDRCFTRDMMTDPNNTVIIKAIVGLGKSLDLSIIAEGV 670 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L GC+ Q P+ +LL+E+ Sbjct: 671 ETREQAEYLKDAGCEMAQGYLFGKPVPAEDFARLLEEQ 708 >gi|146339964|ref|YP_001205012.1| hypothetical protein BRADO2968 [Bradyrhizobium sp. ORS278] gi|146192770|emb|CAL76775.1| Conserved hypothetical protein; putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains [Bradyrhizobium sp. ORS278] Length = 838 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 147/569 (25%), Positives = 259/569 (45%), Gaps = 31/569 (5%) Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454 + L ++D + + A G + G W Sbjct: 280 ALKRREASFRLLFDANPLPMGIFDTET-GRILKVNAAAAAHYGYDRDRLLGMTIWELW-- 336 Query: 455 YIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 D L + R E+R AD ++ R + + +G Sbjct: 337 ---PESETTDLGEAMARLTA-----RDDFHREWRHYTADGSLIDVLAYGRRI-SYDGRDG 387 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + I DITE++K I A D LT +PNR+ + +RL L V+ Sbjct: 388 FLVAIV-DITERRKVEARIAHMAHHDGLTNLPNRELYQERLRQAL-QPGPGGPKPIAVLC 445 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D +K +ND LG +GD +L ++ R+ E + D+ ARL G+ F +IL + + + Sbjct: 446 VDLDLFKNVNDSLGHPMGDRLLQAVADRLRERVHGGDLAARLGGDEFAVILANAPSLNEA 505 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 +DFA + ++++ P + +E+ + ASIG A S TS +++KNA++A+Y AK GG Sbjct: 506 SDFAAGLIQALSAPYEIDGQELVIGASIGIALAPSDGSTSEQLMKNADMALYRAKEEGGG 565 Query: 691 HVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F R ++ DL A E L Y P++ L I G E L++W HP+ Sbjct: 566 VHRFFEKDMDLQAQKRRDMEHDLRHAFAEGEFELYYQPLVELATNTISGFECLLRWRHPE 625 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G IS +EF+ +AE++ +I + ++L R+ +W D I + +N++ Sbjct: 626 KGMISPAEFIPVAEDIGLIVPLGEWVLREACREAATWPD-----DIKVAVNLSPVQFRSR 680 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 L + + ++++ P+R++L +ES+++ E + L +LR +GI +++DDFGT S Sbjct: 681 NLVQVVMQALAQSGLQPARLELEITESILLAETEANLATLHQLRALGIRISMDDFGTGYS 740 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL PFD +K + S + ++ AI+R+I + K++ T A+ + + Sbjct: 741 SLSYLRSFPFDKIKIDRSFVKDLAQRSDCLAIVRAISGLGKSLNITTTAEGVETSDQLDW 800 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GC+ +Q ++ + I LL Sbjct: 801 LRAEGCNQVQGFLFSAARPASEIAGLLAR 829 >gi|261419676|ref|YP_003253358.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC61] gi|319766494|ref|YP_004131995.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC52] gi|261376133|gb|ACX78876.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC61] gi|317111360|gb|ADU93852.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC52] Length = 659 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 148/576 (25%), Positives = 265/576 (46%), Gaps = 16/576 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V++ + R L V S D V + R+ P Sbjct: 89 LCVLRRQAEESGLQARLAEAERRLQLIVEHSNDYVLIFSPNRELSYIPPSWKRKTN---K 145 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + L ++H +D L + EFR + ++ WM + + + Sbjct: 146 RLPVSYEEVLTFVHPDDAPVVAQKLAELYDTYETQ-SAEFRKQGEKGEWVWMEAQGKAII 204 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G + I +I+E+K+ E + A+ D+LTGI NR F + ++ Sbjct: 205 DEAGTLDCVIVTVKNISERKRYEEKLRQLAYFDSLTGIANRSYFERHIHELIA-----SQ 259 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D DK+K IND GD L +R+ L+ D AR+ G+ F ++L + Sbjct: 260 TPFALCYLDFDKFKWINDHFSHQAGDYFLREAVKRVERALRPGDFFARIGGDEFVLLLPN 319 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + S P ++ I T SIG A + +++K A+ A+Y Sbjct: 320 ITKTE-MTALAERLVSSFHEPFYYEKQLIQSTLSIGIAFFPKDSDRIEQVMKYADQALYE 378 Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 K RG N +R + R I++DL A+ +LYL Y P ++L + +G+EAL++ Sbjct: 379 VKERGRNGYAFYRPTEHRQAV--IEQDLPFAIMRGQLYLCYQPKVQLAKGKAMGVEALLR 436 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G+I +F+ +AEE I I L++LE+ R + W + P + + +N++ Sbjct: 437 WRHPSLGDIPPLDFIPLAEESGFIFEITLWVLEQACRQVKEWEKKF--PGLKLAVNLSPF 494 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L EL E ++ ++ +T +P+R+ L +ES +M N E R +L L+++G+ +DDF Sbjct: 495 LLNRPELIEHVKRILRETGLAPNRLILEVTESGLMENIETGRHILTELQRLGVQAAIDDF 554 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+Y+ +P +K + S + G E I+ +II +AK+++ ++A+ + E Sbjct: 555 GTGFSSLAYIRNLPVSLLKIDRSFIQGIAENSKDATIVDTIIHLAKSLDIEVLAEGVETE 614 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L++M CDY Q + + L + + L+E Sbjct: 615 SQVMLLSQMHCDYAQGFYFSRSLEAKKLQQWLEEYN 650 >gi|222109640|ref|YP_002551904.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] gi|221729084|gb|ACM31904.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax ebreus TPSY] Length = 790 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 133/583 (22%), Positives = 264/583 (45%), Gaps = 15/583 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 V+Q + +R LA V + + V D ++ P + ++G Sbjct: 210 VCVLQSLREVHAARDAQALSEQRWRLAATVVDNTIEGVVVTDADGRILSVNPAVTRLMGY 269 Query: 441 ASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G R + H F + + G Q E R + + + + Sbjct: 270 TEEELLGQNPRVFKSGRH---GPAFYEAMWDTMRQ-TGHWQGEIWNRRKNGEVFPERMSL 325 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + ++G + Y+ + DI+E+K + + A D LTG+PNR F ++L + + + Sbjct: 326 SAVRGADGAVTHYVCMFTDISEEKAQHQRLEFLAHCDPLTGLPNRAWFGEQLDSAVRQAQ 385 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 D + ++++++D++K +ND G AVGD+VL +TR++ + L+ D+L RL+G+ + Sbjct: 386 -DSGEQMALLLLNLDRFKDVNDSYGHAVGDEVLRHITRQVEQSLRPGDLLGRLAGDEIAV 444 Query: 620 ILISENNSLKIADFAIAMRKSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 + ++ A A + + + P ++ V S+G + + T+ +L+ A Sbjct: 445 LARHLRHADGAAAVARHLIAAASTPWCTPDGIQVVVGVSVGICMFPAHARTTEALLQGAH 504 Query: 679 LAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 ++Y AK RG F S +R+ I+ L +A+ L L Y P + ++ I+ Sbjct: 505 SSVYGAKARGRGAYCFFDESLIQAARERLEIEARLRVALAQGHLRLYYQPQVCIVTGRIM 564 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W P+ G IS + F+ +AE +I + +++ WR P I + Sbjct: 565 GAEALVRWLDPQEGMISPARFIPVAETSGVIGPLGQWVMRAACEQGQRWRADGL-PEIRL 623 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN++ + ++ + + + ++L +ESV+ P+ R +L RL+++G+ Sbjct: 624 AINLSPRQFQLTDVAACAAEALKASGFPARCLELELTESVLAERPDEIRAVLQRLQQLGV 683 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 + +DDFGT S L++L P D +K + + + +AI +I+ M ++ +++ Sbjct: 684 RMAVDDFGTGYSSLAHLKRFPIDVLKIDQGFIRDIPRSADDMAISAAIVAMGHSLGLSVL 743 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 A+ + + L GCD Q + PL +LL+ Sbjct: 744 AEGVETPQQLAFLRERGCDAYQGYLCSRPLPAEEFARLLQAHN 786 >gi|83747638|ref|ZP_00944674.1| Signal transduction protein EAL [Ralstonia solanacearum UW551] gi|83725690|gb|EAP72832.1| Signal transduction protein EAL [Ralstonia solanacearum UW551] Length = 580 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 152/567 (26%), Positives = 263/567 (46%), Gaps = 23/567 (4%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 V + + D R P A +LG++ ++ G I++ D +D Sbjct: 1 MVNALTEGLLVCDAQRRVTYANPSAARLLGVSLDTLVGLRLPEAVGAAIDEFDTPIRDID 60 Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513 + R +L F +R D + W+ P+ G+ + Sbjct: 61 WPDGDVLADGRPQLNQIFGLRCLDGRTVWVSTNWTPLYAEAGEPATASPAGRHAQPYAVL 120 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DIT+ +++ + I A D LTG+ NR + DRL L L+ + R +VM +D+ Sbjct: 121 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-GTRVSVMFLDL 179 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K IND LG GD +L + R+ + D +ARL G+ F ++L S + + Sbjct: 180 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGMGTRRV 238 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + +I P ++ +E+ V SIG A + +L+ A+ AMY AK RG N+ + Sbjct: 239 AERILAAIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 298 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 +F S R I+ L A + +E Y Y P + + IVG+EALI+W+ +G Sbjct: 299 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSADFGR 358 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + +F+ AEE +I I+ ++L + WR +P + + IN++ + +L Sbjct: 359 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ ++ + ++L +E +++ + LL LR +G+SL LDDFGT S LS Sbjct: 418 GMVRGALTNSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSLS 477 Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + S + +R AI R+II MA+ + +A+ + ++ L Sbjct: 478 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLRE 537 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD Q + PL ++ L++E Sbjct: 538 IGCDEYQGYLLTRPLEPAAMHDLVREH 564 >gi|114319826|ref|YP_741509.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114226220|gb|ABI56019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 1051 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 148/647 (22%), Positives = 280/647 (43%), Gaps = 24/647 (3%) Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381 + +G+ I + ++ + + DIIQ Sbjct: 416 AGPWQAAAARRGFRSVAAFPLFQSDDCIGALAVYSSEERFFSADIIQLMAEMT------- 468 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + L Q + E+ LA S + + D + + Sbjct: 469 ---GDLSFALDNIEREQARKAAEEQMRLAEEVFEHSTEAIIITDARQRIMRVNRAFTERT 525 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + G + L H + +R IL + G + E R + + + Sbjct: 526 GYVPDEVLGRRPHMLRSPHHT-QQFYRRILARLRRH--GFWEGEIWNRRKGGENAPLWLT 582 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + + G I YI + D+TE K I A D +TG+PNR DRL L + Sbjct: 583 LSVVRDEAGRITHYIAVGLDLTETKDREAHIRYLAQHDPVTGLPNRGLLADRLGQALRRA 642 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 D + R ++ +D+D++K IN+ LG GD+VL ++ +R+ + + ++R+ ++F Sbjct: 643 Q-DQHYRLALLSLDLDRFKIINETLGHVAGDEVLQTVAQRLQDHVNGAGTVSRIGSDQFL 701 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I+L + + A A + +A P++L +E+T ++ +G A + + +A+ Sbjct: 702 ILLPEIHKPTEAAQAAERLMACVAEPLDLSGQELTPSSVVGIALYPEDGDNLETLHSHAD 761 Query: 679 LAMYHAKHRGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 AM AK G+ F ++S +R+ ++ L A++ E L Y P + L D + Sbjct: 762 AAMSMAKQASGHEGYRFFSSDMTSRARERLSLESRLRRALDRGEFRLHYQPQVSLADGTL 821 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 G+EAL++W G+IS + F+ IAEE +I + ++L R +WR P + Sbjct: 822 TGMEALLRWHAGDEGDISPARFIPIAEETGLIVPLGRWVLGEACRQNRAWRQAGL-PALP 880 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKI 854 + +N++ L +++ ++ + + + L +ES+ + + LR++ Sbjct: 881 VSVNLSVVQLRRSDVVADVRRALETSGLPGDGLHLEVTESLFLSEDDPAVVTGFQTLREM 940 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 GISL +DDFGT S L YL +P +K + S + G + AI ++II +A+++ Sbjct: 941 GISLAIDDFGTGYSNLGYLKRLPIAKLKIDQSFVRGIGDSGHDTAINQAIISIARSLGLG 1000 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 +IA+ + +++ L +GCD IQ + + PL +L+ PL Sbjct: 1001 VIAEGVETAAELRVLQALGCDEIQGFYYSRPLDAERAGQLMAAPPPL 1047 Score = 61.1 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 9/181 (4%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV-LGS 414 +A ++ A G++L + L T +Q + ER + S Sbjct: 137 LARWSFTTGLLLVVAAGTGIILWWRGHVHGLEARRLRTELMAQADLAARERAYETLAENS 196 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 DI+ D + + G+ G + + R + + Sbjct: 197 PDIIVRLDRDLRHLYVNRALEAFTGIPREHYLGRTHEEVGF-----RGKLLATWERHLNQ 251 Query: 475 ---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 F + + I P ++ G+I + I++D+T ++ E I Sbjct: 252 ALESGEPGTMTFSHPDREGRVRHFEALIVPETDDTGNIAHVLCISHDVTGHVQAREEISR 311 Query: 532 N 532 Sbjct: 312 L 312 >gi|297537600|ref|YP_003673369.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297256947|gb|ADI28792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylotenera sp. 301] Length = 861 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 144/561 (25%), Positives = 248/561 (44%), Gaps = 13/561 (2%) Query: 403 DGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 E LA S + + D + P + G + G L + Sbjct: 304 AEEELKLAGLVYKNSSEAMAVTDEEGRILAINPAFTKMTGYEFDEVRGKTHAMLQS-DQH 362 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D + + DS G+ Q E + + + + + I + +G + R++ + +DI Sbjct: 363 SVDFYIAMWDSIA--VTGQWQGEVWNKRKNGEIYPEWLTINTSYHKDGSVHRHVALFSDI 420 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + K++ E IL A D LT +PNR+ F DRL + S + + ++ +DID +K++ Sbjct: 421 SAIKEAEELILNQANYDQLTKLPNRRLFNDRLEQEIKKSQREKHSTV-LLFVDIDHFKEV 479 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +GD +L+ RI ++ D +ARL G+ F IIL ++L IA A + Sbjct: 480 NDTLGHDMGDRLLIDAAMRIKSCVRDSDTVARLGGDEFTIILTDLKDNLSIAQIAQNIIS 539 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697 S++ +L R+ V+ASIG A + E+LK A+ AMY AK G F + Sbjct: 540 SLSEVFHLGTRKAFVSASIGIAFYPEDATNIVELLKIADQAMYVAKSAGRGCYRFFTKAM 599 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ + DL A+ + + + Y PI+ L I EAL++W HP+ G +S + F Sbjct: 600 QQESDFRIRLSNDLHQALHSKQFTVHYQPIVELNTGHIHKAEALLRWQHPELGAVSPAIF 659 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL-DNELCEGMQA 816 + IAE+ I I ++ + + I +N + +E+ Sbjct: 660 IPIAEDNGTIHEIGNWVFTQAVNQAAHIQSLIGR-DFQITVNKSPIQFKGHDEIIHNWIT 718 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L++ + + +E ++M L R+ GI + +DDFGT S LSYL Sbjct: 719 LLNDINLPAKNVVVEITEGILMDVVGDIPDKLLAFREAGIKIAIDDFGTGYSSLSYLKKF 778 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + A+ +I+ MA + +IA+ + E+ + L +GCDY Sbjct: 779 DVDYLKIDQSFTRHLSLNAPEFALCEAIVVMAHRLNIKVIAEGVETELQRELLKLIGCDY 838 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + P+ + LL++ Sbjct: 839 GQGYLFSKPVPAAELEILLQK 859 Score = 74.6 bits (182), Expect = 8e-11, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 40/140 (28%), Gaps = 1/140 (0%) Query: 390 VLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +Q D E + + + + I+G + + Sbjct: 168 AFRQRDKAQDALRDNETLFQAVFENAAVGIAQVSTAGHFLQINREYCRIIGYSQEEVLTN 227 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + D + + E R ++ W+ + ++ + N+ G Sbjct: 228 NFTFQQITLPEDLKIDVLNAKKLIDGESDKYIAEKRYIHKNSSIVWVNLSVQLLRNNTGQ 287 Query: 509 ILRYIGIANDITEQKKSLEG 528 L +I DI ++K + E Sbjct: 288 PLYFISAVQDIGDRKLAEEE 307 >gi|24374900|ref|NP_718943.1| sensory box protein [Shewanella oneidensis MR-1] gi|24349604|gb|AAN56387.1|AE015775_4 sensory box protein [Shewanella oneidensis MR-1] Length = 879 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 143/561 (25%), Positives = 262/561 (46%), Gaps = 15/561 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 E+ +LA S + V D + I G + + G R + H Sbjct: 323 EEQLTLATNVFKHSFEGVVVTDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRHE- 381 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + F T+ ++ + G+ E R D I I + + G+I ++ + DI Sbjct: 382 -KAFFETMWNNLL--GGGKWNGEIWNRRKDGTIFPQNITISAIYDEVGEIRYFVAVFADI 438 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + QK+S + A+ D LT +PNR + +L + + ++ TV ID+D +K I Sbjct: 439 SAQKQSEAQLAHLAYFDPLTHLPNRMKLMIQLKQEIMHAKRLNSQLATV-FIDVDLFKHI 497 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD++LV L +R+ L+ D+L+R+ + F ++ +R+ Sbjct: 498 NDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGSDEFVALISGIQYHEDATAAINQLRQ 557 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + + +TA++G + + S + +L+NA+ AMY AK G N+ + S Sbjct: 558 VFEQPFVVSTGDHLRLTATMGVSLYPSDGSNADTLLRNADAAMYRAKSEGRNNYAFYTES 617 Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+E + LYL+Y P + L+ + VG+EAL++W+ P G IS S Sbjct: 618 LTKESIEHLKLQSALYGALEQNALYLMYQPKVDLVTRKTVGVEALLRWNDPILGQISPSV 677 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I I L++LE + + W I +N+A + L N E ++ Sbjct: 678 FIPVAEKSGLIYDIGLWVLETACQQGVHWLAAGKQFG-RIAVNVAGQQLQRNSFVEDVKR 736 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++T + ++L +ESV+M NP+ + L L +GI L++DDFGT S L+YL + Sbjct: 737 ILTQTGLPATCLELEVTESVMMNNPDVAIRDLKLLGDLGIVLSVDDFGTGYSSLNYLKKL 796 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + AI +++I + ++ I+A+ + LT+ CD Sbjct: 797 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIVLGHALKLEIVAEGVETAEQADFLTQNLCDQ 856 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + P + + Sbjct: 857 AQGYLFSRPQLPADVEAFFTK 877 Score = 38.0 bits (87), Expect = 7.2, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 3/117 (2%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 +W + + L + G L I D F + Sbjct: 217 IWVKNTEGVYTICNQSVEKAWDLPRSDIVGKTDEDLFGKAIADI--FLNGDRLAIEAGAP 274 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + E N W+ P +G++ IG+ +I++ K+ +E L A Sbjct: 275 IIVAECLDGENKNNHLWLETLKLPALTPDGELAGVIGMTRNISKHKE-VEEQLTLAT 330 >gi|120601363|ref|YP_965763.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris DP4] gi|120561592|gb|ABM27336.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris DP4] Length = 576 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 152/540 (28%), Positives = 259/540 (47%), Gaps = 10/540 (1%) Query: 419 WDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W+ TP I G + IH +D +R + Sbjct: 36 WECWESPEGRVHFVTPACQRISGFGIDNFRAHHLFIEGLIHPDDLPAWRRH-REMLTAGL 94 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + + E R+R A+ W+ + R +++ +G+ L DIT++K L + A+ D Sbjct: 95 PKAEVEIRIRTAEGGEKWLAVTSRNLTDGHGEPLGIRSSLRDITDRKMVLSQLRHQAWHD 154 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LTG+PNR LDRL L A + V+ +D+D++K +ND LG A GD VL Sbjct: 155 PLTGLPNRALCLDRLDRALGRLARGNGELCAVVFLDLDRFKLVNDTLGNAAGDRVLRETA 214 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 RR+G + D ++RL + F I++ + +R++ P ++ R + VTA Sbjct: 215 RRLGTATRSTDTVSRLGSDEFIILIEDLRGEDEARATLGRLREAQRAPFDIDGRHLRVTA 274 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLA 714 S+G + E+L+NA +AM+HAK GG+ F S D + ++ DL A Sbjct: 275 SMGVVLAR--GGNADEVLRNANIAMHHAKEHGGDAASFFHASMLEEALDLMQLEIDLHRA 332 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 +EN E +LVY PI+ ++D I G EAL++W HP+ G + F+ +AE +I + Sbjct: 333 LENDEFFLVYQPIVSVVDRRITGFEALLRWRHPERGVVGPDAFIALAEHSGLIHLLGRKA 392 Query: 775 LERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 L+ R + WR + + +N++++ L + E + + + P +KL + Sbjct: 393 LDEACRTLAKWRRVDQLFDGLTMHVNLSARQLSQTHIVEQVAEALRDSCLPPHLLKLEVT 452 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892 E+++M NP+ + +L RLR IG+ + +DDFGT S LSYL P DT+K + S ++ T Sbjct: 453 ETMLMENPDYANAVLCRLRDIGVGVCVDDFGTGYSSLSYLQRFPIDTLKVDRSFVSRMTR 512 Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + I++++I +A ++ ++A+ + E L + C Y Q A PL + Sbjct: 513 EPGQFKIVQAVIALAHSLGLEVVAEGVEDEEQRIMLLGLACRYAQGFLFAKPLAAEDVPA 572 >gi|330965688|gb|EGH65948.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 643 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 152/640 (23%), Positives = 283/640 (44%), Gaps = 18/640 (2%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ LL W + + L++ RL L+ V++ Sbjct: 7 GALRTAVLYGLLSILWFMACDLLLPLFIEEPARLAFCHQMTGYAWVLLSAVMIFVARDRL 66 Query: 389 HVLATGYFSQGIFSDG-ERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + G D +R LA + + V D V I G + Sbjct: 67 RKIIGGEAHFERQQDDYDRLRLAEAVFDSTREGVLVSDAQGRIVHVNRAFVDITGYQAEE 126 Query: 445 MHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + H + +R + S + G+ E R + + IR +S Sbjct: 127 VLGFNPSTFKSGRH--GPEFYRQMYHSLLS--VGQWSGEIWNRRKSGEIYPQWQTIRSVS 182 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +G ++ + +DIT K+S + + D LT +PNR DR++ L + Sbjct: 183 GDDGQPRHFVAVFSDITAIKRSEQELAQLVHYDGLTDLPNRLLLTDRISQALTSA-RFSK 241 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++++D+D +K IND LG VGDD+L ++ R+ L +ARL G+ F +++ + Sbjct: 242 RGCGLLLVDLDHFKNINDSLGHNVGDDLLRAVAERLKGLSDNEMTVARLGGDEFALLVKN 301 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ A A + + P + ++ VTASIG + + +++ ++L+NA+ A++ Sbjct: 302 CPQVVQAAALAQQVIEVFKAPFAIAAHQLFVTASIGISLYPGDALSAEQLLRNADSALFK 361 Query: 684 AKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + + + RV + +L A+E EL + Y P+ L+ + G+EAL Sbjct: 362 AKSEGRDCYALYTEELTAHAQQRVQLAGELRQAIEQGELRVFYQPVHDLITRSVCGVEAL 421 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP G +S EF+ IAE+ +I I+ ++L R + +W + F+ +N++ Sbjct: 422 VRWQHPTRGMVSPGEFIPIAEQNGLIADIDAWVLSAACRQMRAWLTEGVSIA-FVAVNVS 480 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 S+ +L + ++ T P+ ++L +ES VM +PE++ L RLR++G+SL +D Sbjct: 481 SRLFSRGDLDRQVAQVLHDTGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAID 540 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L L +P +K + + G AI+R++I + ++ ++A+ I Sbjct: 541 DFGTGYSSLLRLKRMPVQKLKIDQGFVAGLPGDGDDGAIVRAVIALGASLGMRVLAEGIE 600 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 L GC Q A P+ + ++ P+ Sbjct: 601 QASQAAFLLENGCQLGQGYWFARPMAAH-LIDWY--HAPV 637 >gi|288942323|ref|YP_003444563.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288897695|gb|ADC63531.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Allochromatium vinosum DSM 180] Length = 861 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 138/579 (23%), Positives = 254/579 (43%), Gaps = 13/579 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + L + + + S + + D + + G + Sbjct: 150 RIIAVVETLRDRTSHKLAELRLRQMASVFEHSQEGIMITDPATRILDVNASFVRVTGYSR 209 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G L + D +R + GR E R + + I+ I + Sbjct: 210 EEALGRTPTLLKS-GLQDAAFYRALWRDL--NETGRWHGEIWNRKKSGELYPEILHINAV 266 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + +G + YIG+ DIT+ K S + A D LTG+PNR RL LD + + Sbjct: 267 QDPSGRVTHYIGMFIDITDLKNSQSRLENLAHYDVLTGLPNRLLLGYRLRQALDDAQRHE 326 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 L V +D+D +K +ND G GD +L+ + RR+ + L+ D +ARL G+ F I+L Sbjct: 327 RL-AAVCFLDLDNFKLVNDHHGHETGDRLLIDIGRRLRDTLRSNDTVARLGGDEFVILLN 385 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 N ++ + + + +A P+ + +I +T S+G + +L++A+ AMY Sbjct: 386 DLRNQEELDNVLVRLLDGVAHPVRIDALQIVITVSVGVTIYPLDDHDPDTLLRHADQAMY 445 Query: 683 HAKHRGGNHVESFRVSSFRSD---RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 AK G N + F + + ++ + A+++ E L Y P + + ++VG+E Sbjct: 446 QAKQMGRNRYQLFDPEAANAMQSRHRELE-RIRQALQHGEFQLYYQPKVDMRLGQVVGME 504 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HP+ G + +F+ + E +I + ++L I W + P+ I +N Sbjct: 505 ALIRWRHPERGLVPPLQFLPLIEASPLIVEVGEWVLHEALGQIRQWCAEGR--PLTISVN 562 Query: 800 IASKDLLDNELCEGMQALISKTLYS-PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 IA+ + +Q ++++ + P ++L ES + + + R ++ + +G+ Sbjct: 563 IAAHHFQQRDFVLRLQTILAEHPEATPRLLELEILESAALEDIQSVRGIMTACQAMGVRF 622 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 LDDFGT S LSYL +P +T+K + S + + +AI+ +I +AK +IA+ Sbjct: 623 ALDDFGTGYSSLSYLKQLPAETLKIDQSFVRNMLEDSEDLAIIEGVIGLAKVFRKEVIAE 682 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L R GCD+ Q + P+ I + E Sbjct: 683 GVETPEQGLLLMRFGCDHAQGYGIGRPMPAEQIPAWMDE 721 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 14/129 (10%) Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP------------YIH--INDRDNF 464 + D + + G+ + + G +W +H +++ D+F Sbjct: 47 FVLDATGRVIVWNRACENLTGMPASRVLGSQDHWRAFYPECRPCLADLVLHNRLDEIDHF 106 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 T D + + V ++ I P+ +S+G I+ + D T K Sbjct: 107 YTEYDQLLRTGCEIHAENWCVMPLQGTERYLAIDAGPVRDSSGRIIAVVETLRDRTSHKL 166 Query: 525 SLEGILCNA 533 + + A Sbjct: 167 AELRLRQMA 175 >gi|217969756|ref|YP_002354990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|217507083|gb|ACK54094.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 920 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 125/565 (22%), Positives = 246/565 (43%), Gaps = 19/565 (3%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDR 461 + +R S+ + S + + D + I G A + G L + R Sbjct: 360 ELQRLSMVIEQSPESIVITDTAGCILYVNEAFQRITGYARDEVLGRNPRILNGGLTP--R 417 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + + + EF D + + I P+ ++ G + Y+ + DIT+ Sbjct: 418 ATYEQMWATLLAGE--VWRGEFHNVRKDGSAYLELATIAPIKDAGGTVTHYVAVKEDITQ 475 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K+S + A+ D LTG+PNR DR+ + ++ +M++DID+++++ND Sbjct: 476 RKQSEALLHRLAYFDALTGLPNRALLHDRIAQAIRSGVRRESF-GMLMLVDIDRFRQLND 534 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIA 636 LG A GD +L + R+ ++ D +AR + F +++ + A Sbjct: 535 TLGHAAGDRLLCEVAARLRASVREEDTVARHGDDDFAVLVERIGETEADALSHAEHVARK 594 Query: 637 MRKSIAMPINLLERE---ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 +++++ P L E T S G + + + +LK AE+A+Y AK G + V Sbjct: 595 LQRALQQPYVLGGTEGDRHFATLSFGISLFHDGVSSLESLLKQAEVALYRAKQDGRDIVR 654 Query: 694 SFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F ++ + A+E + L + P + ++G EAL++W Sbjct: 655 FFNPEMQAVVDAHARLEARMHEALEANAFRLFFQPQVNRR-GVVIGAEALLRWPLDGGAM 713 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S +EF+ +AE+ I + L++L + W+ + I +N++++ + Sbjct: 714 VSPAEFIPLAEDTGHIVRLGLWVLRSACAQLARWQMNEGTRHLKIAVNVSARQFHQPDFV 773 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ + P R++L +ES ++ + + + + LR +GI LDDFGT S LS Sbjct: 774 ASVKDSVRAAAIDPCRLELELTESAILSDVDETIRRMNELRALGIRFALDDFGTGYSSLS 833 Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +PFD +K + S + E AI+ +I+ ++ + ++A+ + L + Sbjct: 834 YLKRLPFDQLKIDQSFVRDMAEDESSEAIVLAILSLSHALGLEVVAEGVEMPEQRDFLRQ 893 Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954 GCD Q PL + L+ Sbjct: 894 HGCDSFQGYLFGKPLPMEAWGDFLE 918 >gi|88706729|ref|ZP_01104431.1| sensory box/GGDEF/EAL family protein [Congregibacter litoralis KT71] gi|88699050|gb|EAQ96167.1| sensory box/GGDEF/EAL family protein [Congregibacter litoralis KT71] Length = 793 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 132/566 (23%), Positives = 247/566 (43%), Gaps = 14/566 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455 + + SG+ + D + I G + G + L Sbjct: 233 EHAARRGLFQAAAVFKNSGEGILISDKDGRIRDVNAAFSRITGYSREDAIGQPTSLLRSG 292 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D F + + R G + E R ++ I + +G ++ I Sbjct: 293 RHDGD---FYADMWQTL-QRDGVWRGEIWNRRKSGTVFPELLTISKIDGPDG---GFMAI 345 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI++ K++ E + A D LT +PNR + L + + + V +DID Sbjct: 346 FTDISQLKETEEQLQKLAHYDPLTNLPNRFLVNECLEHSIRRAQRRSD-HLAVFFLDIDS 404 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG GD +L + R+ LL+ D + R+ G+ F ++L + A Sbjct: 405 FKNINDSLGHFAGDKLLKTTANRLKALLRDDDSVGRIGGDEFLMVLDDISTPDDATHIAE 464 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ P+ L R I+V+ASIG + + T+ ++ NA+ AMY+AK +G + + Sbjct: 465 KIIGALRKPMILEGRSISVSASIGISIYPEDGQTAETLMSNADAAMYNAKDQGRDTFRFY 524 Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++ V+I L AV E L + P + + ++GLE L++W H G +S Sbjct: 525 SEHLTRQAFQNVLIDSALREAVSRQEFRLAFQPQVNTDNGSLLGLEVLLRWHHLTLGTVS 584 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 S+F+ AE +I+ I ++LE+ W + + +N+++ + Sbjct: 585 PSQFIPQAERTGLIRDIGHWVLEQSCLQGSRWIAEGLQFG-HLAVNVSAPQFRAEDFVAQ 643 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ +++ T + P +++L +ESV++ + E+ + LR +G+ +DDFGT S LSYL Sbjct: 644 VRKVLADTEFPPEKLELELTESVLVHDTEKLIENMHELRALGVMFAIDDFGTGYSSLSYL 703 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S + + I +++ + K + +IA+ I E + L +G Sbjct: 704 KRMPIDRLKLDKSFVDHIVSDDSDRIIAGAVLALGKAMGLPVIAEGIEQEAQARVLQSLG 763 Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957 C + Q P+ I +L+ Sbjct: 764 CKHFQGYLYGRPMYGPRIEVVLRAHL 789 Score = 67.3 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 1/116 (0%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 +G W WD + D +L + + + + + I D F++ + + Sbjct: 11 AGIGTWRWDASSGEFQLSDDGIAMLQVRADELPLGVDTIIGQILDEDVAGFQSAMAELIT 70 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 G ++ +FR D W R ++ + + G+ D+T Q+ + + Sbjct: 71 AP-GLIEVDFRALLDDGDIRWYRAIGRSYASPDASVTHAAGVLLDVTTQRSAEQYY 125 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 8/143 (5%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 A E+ A + + I + T +LG + G Sbjct: 109 AGVLLDVTTQRSAEQYYDAFFQQPNGMHLVASIDGEIRLTNSAWQLVLGHGDAELQGQ-- 166 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 N L +H DR+ + + L +E R R D + + Sbjct: 167 NLLDLVHPEDREATLAEMGK-LSQGMYTLYFENRYRHRDGSYRVIAWSAATAERE----S 221 Query: 511 RYIGIANDITEQKKSLEGILCNA 533 + DI+++ + G+ A Sbjct: 222 VICAVGRDISQEHAARRGLFQAA 244 >gi|237654169|ref|YP_002890483.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|237625416|gb|ACR02106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 821 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 152/586 (25%), Positives = 279/586 (47%), Gaps = 5/586 (0%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ + + + + + ER +LA+ GS D +WDWDI D V + ILG+ Sbjct: 236 LMAEALQNRIAELQDTAVRLRASEERHALALRGSNDGLWDWDIDADDVYYSERFCQILGV 295 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G++ + L Y+H +RD +R L + E RVR D + W+++R Sbjct: 296 QPGTLSNRPEDMLAYLHPYERDAYRQRLVEHLKGDSNHFIMELRVRLPDGAYRWVLMRGV 355 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + N R G DI +K++ + ++ +A D LTG+PNR F++ L Sbjct: 356 ADRDENLHAYRMAGSLGDIDLRKRAEQQLVHDALHDGLTGLPNRAMFIEHANRALAQRRR 415 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D + ++ I+++++ +ND G VGD++L + I L++ D+ AR+ G++F ++ Sbjct: 416 GDLTQIAILAINLERFSLVNDSYGHLVGDELLRRIGAHIAALMRDGDVCARVGGDQFAVL 475 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L +S+ + A + +++ +G A + + + +L++A+ A Sbjct: 476 LNGVESSIDALRICEQLVALPAFAPDDDGQQLHPRCRVGVAISDNEREDAESLLRDADNA 535 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 ++ A+ +E F + + + +L A+ L + Y PI+ L + Sbjct: 536 LHKARRSERGPIEFFHTEMHAAAVRALQVEAELRKALTQGGLQVWYQPIVELANLRTTSF 595 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFIL 797 EAL++W HP G +S EF+ +AE L +I I +LER+ D+ W P+ + Sbjct: 596 EALVRWPHPTLGLLSPGEFIPLAEALDLIHDIGTLVLERVCADLREWAGRLPADAPLRVS 655 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++++ L +L + A I + + RI+ +ESV+ + L LR G+ Sbjct: 656 VNLSARQLARPDLAAELLAAIDRVGVARERIRFEVTESVLAHPDGPAIDHLHALRAAGLD 715 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT S LSYL +P + VK +GS + ++ AI+R I +A ++ T++A Sbjct: 716 ILIDDFGTGYSTLSYLHTMPCNQVKLDGSFVRSLPYDQRLRAIVRHSIELAHDLGMTVVA 775 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + I E ++ L MGCD+ Q + PL ++ L P + Sbjct: 776 ECIEDEAQLEILRAMGCDFGQGYLFSRPLDRDATFNRLHNPAPERR 821 >gi|257482523|ref|ZP_05636564.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298484693|ref|ZP_07002796.1| Sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160833|gb|EFI01851.1| Sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|331012829|gb|EGH92885.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 642 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 153/623 (24%), Positives = 287/623 (46%), Gaps = 17/623 (2%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394 + + + + + L I + Q VL+ ++ F ++ ++ Sbjct: 14 LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSAVMIFIARDRLRSLIGGD 73 Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 Q +D +R LA + + V D V I G + + G Sbjct: 74 ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H + ++ + S + G+ E R + + IR + +G Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + +DIT K+S + + D LT +PNR DR++ L + +++ Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSARASKRG-CALLL 248 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND LG VGDDVL ++ R+ + LAR G+ F +++ + + ++ Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + ++ P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368 Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + RV + +L AVE +L + Y P+ L+ I G+EAL++W HP+ Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAVELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ IAE+ +I I+ ++L+ + +W + +P F+ +N++S+ Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + + +T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT S Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L L +P +K + + G + IAI+R++I +A ++ ++A+ I Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607 Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949 L GC Q A P+ +I Sbjct: 608 LLGNGCQLGQGYWFARPMVAQAI 630 >gi|119897835|ref|YP_933048.1| GGDEF/EAL/PAC/PAS-domain-containing protein [Azoarcus sp. BH72] gi|119670248|emb|CAL94161.1| GGDEF/EAL/PAC/PAS-domain containing protein [Azoarcus sp. BH72] Length = 828 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 146/612 (23%), Positives = 263/612 (42%), Gaps = 14/612 (2%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV--- 411 M + D LV I + + ++ G + ER A Sbjct: 204 GMRQMLEIVEDGQGRRLVFEATRIPLFDSVGQRKGIVVVGRDITERRAAEERLRQAATVF 263 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDS 470 + + + D + P + I G A + G R H D +R + + Sbjct: 264 DNTVEGISITDRDGIIQSVNPAFSRITGYAEAEVIGCHTRILQSGRHGADY--YRAMWRT 321 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 R G+ Q E R + + + I + + G++ Y+ + +DI++ K + + Sbjct: 322 LA--RTGQWQGEIWNRRKTGEVYPQWLTIGTVRDDEGEVSNYVAVFSDISQIKDAQSQLE 379 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D LTG+PNR DRL + + V+ +D+D +K +ND LG GD Sbjct: 380 RLAHYDPLTGLPNRALLGDRLAHAISRARRA-GTSVAVLFLDLDGFKNVNDSLGHPAGDR 438 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L + R+ L+ ++R G+ F ++L +++ A + IA P++L Sbjct: 439 LLQIIAERLCGALRSEGSVSRFGGDEFAVVLEDVVRGEAVSEVAEHLIAEIARPLDLDGH 498 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIK 708 V+ASIG A + ++ ++K A+ AMY +K G N R+ ++ Sbjct: 499 GAHVSASIGIALFPRDGDDATTLIKAADTAMYRSKALGRNTFSFHHEDMAQAAHRRLSLE 558 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 L A+E L Y P I L + G EAL++W P+ G +S +EF+ +AEE +I Sbjct: 559 HGLRQALEQGRFELWYQPQIDLRTGVLAGAEALLRWRDPERGLVSPAEFVPLAEETGLIL 618 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I L++LE R +W D P I +N+A+ + + + ++S + P+ + Sbjct: 619 PIGLWVLEEACRAGRAWLDVGLAPG-RIAVNVAAPQIERGGFDQAVARVLSASGLPPAAL 677 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 ++ +E ++ + E +RL + LR +G+ + +DDFGT S L+YL + T+K + + Sbjct: 678 EVEITEGSLLRSAENARLAVAALRALGVGVAIDDFGTGYSSLAYLKNLAVQTLKIDREFV 737 Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 +AI R+II M +++ ++A+ + L GC Q A P+ Sbjct: 738 RDLPHDAGNLAITRAIIAMCRSLGFGVVAEGVEEPAQAAFLVSEGCTLAQGYLFAKPMPG 797 Query: 947 NSILKLLKERFP 958 + L+ P Sbjct: 798 AEFAEWLRTYRP 809 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + V+ D + LG + + G L D Sbjct: 6 LQNVLDAIPAPVFFKDAAGRYLGCNTAFLDFLGYTADRILGKSVFELS---PPDLAARYH 62 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 D + G YE +V+ A + ++ ++ G + +G DIT++K++ Sbjct: 63 AQDQALFDNPGEQVYEAQVQNARGERREVVFYKATFHDTEGKVAGLVGTILDITDRKQA 121 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 2/126 (1%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTIL 468 + D V+ D + T + GLA G L + Sbjct: 136 IQALPDAVFLKDGEGRWLVTNGAAQALFGLAERDWFGRTDLELGSEDPARAEVHAVCARN 195 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 D V + G Q V + P+ +S G + + DITE++ + E Sbjct: 196 DELVWQQGGMRQMLEIVEDGQGRRLVFEATRIPLFDSVGQRKGIVVVGRDITERRAAEER 255 Query: 529 ILCNAF 534 + A Sbjct: 256 LRQAAT 261 >gi|46581467|ref|YP_012275.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450889|gb|AAS97535.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris str. Hildenborough] Length = 576 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 152/540 (28%), Positives = 259/540 (47%), Gaps = 10/540 (1%) Query: 419 WDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W+ TP I G + IH +D +R + Sbjct: 36 WECWESPEGRVHFVTPACQRISGFGIDNFRAHHLFIEGLIHPDDLPAWRRH-REMLTASL 94 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + + E R+R A+ W+ + R +++ +G+ L DIT++K L + A+ D Sbjct: 95 PKAEVEIRIRTAEGGEKWLAVTSRNLTDGHGEPLGIRSSLRDITDRKMVLSQLRHQAWHD 154 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LTG+PNR LDRL L A + V+ +D+D++K +ND LG A GD VL Sbjct: 155 PLTGLPNRALCLDRLDRALGRLARGNGELCAVVFLDLDRFKLVNDTLGNAAGDRVLRETA 214 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 RR+G + D ++RL + F I++ + +R++ P ++ R + VTA Sbjct: 215 RRLGTATRSTDTVSRLGSDEFIILIEDLRGEDEARATLGRLREAQRAPFDIDGRHLRVTA 274 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLA 714 S+G + E+L+NA +AM+HAK GG+ F S D + ++ DL A Sbjct: 275 SMGVVLAR--GGNADEVLRNANIAMHHAKEHGGDAASFFHASMLEEALDLMQLEIDLHRA 332 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 +EN E +LVY PI+ ++D I G EAL++W HP+ G + F+ +AE +I + Sbjct: 333 LENDEFFLVYQPIVSVVDRRITGFEALLRWRHPERGVVGPDAFIALAEHSGLIHLLGRKA 392 Query: 775 LERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 L+ R + WR + + +N++++ L + E + + + P +KL + Sbjct: 393 LDEACRTLAKWRRVDQLFDGLTMHVNLSARQLSQTHIVEQVAEALRDSCLPPHLLKLEVT 452 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892 E+++M NP+ + +L RLR IG+ + +DDFGT S LSYL P DT+K + S ++ T Sbjct: 453 ETMLMENPDYANAVLCRLRDIGVGVCVDDFGTGYSSLSYLQRFPIDTLKVDRSFVSRMTR 512 Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + I++++I +A ++ ++A+ + E L + C Y Q A PL + Sbjct: 513 EPGQFKIVQAVIALAHSLGLEVVAEGVEDEEQRIMLLGLACRYAQGFLFAKPLAAEDVPA 572 >gi|307823056|ref|ZP_07653286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307735831|gb|EFO06678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 751 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 145/571 (25%), Positives = 252/571 (44%), Gaps = 10/571 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + A + I + R V S DI+ +D RV P + + Sbjct: 165 LTAEQAMLEEIALNERRFRSLVENSPDIIVRYDRDCRRVFVNPAYIRETDTPAELVLNKS 224 Query: 450 RNWLPYIHIND-RDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + + R+ +R L + ++ E+ D Q + + +++G Sbjct: 225 TDDANVWRPSMPREEYRKRLQQVMDTGVTDQILLEW--VRQDAQRVSHEMYVVAEYDADG 282 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 D++ + I D+T K++ +L A D LTG+PNR+ F DRL + + +D Sbjct: 283 DVIGTLAIGRDVTRSKEAERQLLHQASYDILTGLPNRRLFGDRLGKDVAKAKRND-FGLA 341 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D++K++ND LG AVGD +L +RI ++ D +AR +G+ F +IL S Sbjct: 342 VLFIDLDRFKEVNDTLGHAVGDLLLKKAAQRICSCVRESDTVARFAGDEFVVILPEVGES 401 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + +A E V+ASIG A + + ++ A+ AMY AK Sbjct: 402 GALQRIAQNIVGVMAQSFTFGEHSAYVSASIGIAIFPQDGDNADTLVGCADQAMYSAKKT 461 Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N+ F R+ + DL A+ +L + Y PII ++ +V EAL++W Sbjct: 462 GRNNFCFFNRQMLELAHQRMQLGNDLHDALGKGQLEVFYQPIIDVVSGRVVKAEALLRWR 521 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKD 804 HP+WG + F+ IAEE +I+ I ++ A + W + I +N++ + Sbjct: 522 HPEWGMVPPDRFIPIAEETDLIQEIGAWVFREAADTVKRWNALSANQGQRQISVNMSPRQ 581 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + + + P+ I + +E +++ N L +LR GI ++LDDFG Sbjct: 582 FTRGRGEQIIINYMQAYGLDPAHIAVEITEGLLLDNCPGVTQKLEKLRAAGIEISLDDFG 641 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S ++YL D +K + S + AI +I+ MA + +IA+ + E Sbjct: 642 TGYSAMAYLKRFNIDYLKIDQSFVRDLETDPGDRAIAEAIVVMAHRLGLKVIAEGVETEG 701 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L GC+Y+Q A P+ + L + Sbjct: 702 QYALLAEAGCEYVQGYLFAKPMPVEAFLAFV 732 >gi|260222537|emb|CBA32198.1| hypothetical protein Csp_D30930 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 731 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 152/581 (26%), Positives = 272/581 (46%), Gaps = 17/581 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + E SLAV G+G +W WD+V D V + ILG G++ WL IH Sbjct: 152 AVRTQQEILSLAVSGAGLGIWHWDLVEDSVEWNARMQQILGYPDGALTPRSATWLNLIHP 211 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517 +D + L + + R+R ++ W++ R + G +LR G+A Sbjct: 212 DDVQTWEDSLRQHLRDESNEHRLSVRLRHHSGRWVWILFAGRAADRSVQGRVLRLAGVAM 271 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+ QK + + A D+LT +PNR ++ + L + V+ +D D++K Sbjct: 272 DVNAQKALEQQLRTAARTDDLTALPNRTGMVELIRAALARRRVEPGYHFAVLFMDFDRFK 331 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDIL----------ARLSGNRFGIILISENNS 627 ++ND LG V D +L + RR+ + L+ D AR+ G+ F ++L Sbjct: 332 QVNDTLGHTVRDALLRQIARRLEDSLRPGDSFAHSGDFDKVAARIGGDEFVVLLDDIRGD 391 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 L A + +A P L +T T SIG + T ++ + +L++A++AMY AK Sbjct: 392 LDAIHVASRLLYVLAAPYVLDGHRVTSTVSIGIVTSTHTEDDADSVLRDADIAMYEAKRT 451 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G F + S SD V ++ DL A++N E+ +VY P++ L ++ G+EAL++W Sbjct: 452 GRARYVLFDPLMRSQVSDSVSLENDLRQALDNREMRVVYQPLLHLPGHQLAGVEALVRWQ 511 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKD 804 HP G +S +F+ +AE +I A+ F+LE + + P + +N++ Sbjct: 512 HPVRGAVSPVDFIPLAEACGVIAALGQFVLETACQTFAQLQRDLGSTAPPSMSVNLSRAQ 571 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L + L ++ + P ++ L +ES+ + + L LR +G++L+LDDFG Sbjct: 572 LREPGLVGMVRDALRSADMEPRQLVLEVTESLAAQD-ALVQTTLQELRAMGVALSLDDFG 630 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+ L +P ++K + S + + ++ + + +A ++ +A+ I Sbjct: 631 TGYSSLACLHELPVSSIKIDRSFVNLLDKSEYHRVLIEATLRVAATLKLGTVAEGIETAE 690 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 E+ MGC Q P+ +++ ++ R PL K T Sbjct: 691 QATEMAAMGCQKGQGYWFGRPMEVEALVAWIQARQPLEKIT 731 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 62/159 (38%), Gaps = 6/159 (3%) Query: 373 GGLVLIVILIGFTVIQ-HVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV 428 GG+ ++ +++ F +++ A + + +R S + + D + V Sbjct: 2 GGIAVLGLVLSFALVEPTARAVRRQYEALSRQADRLKRMAKVAELSSNAIAITDGMHRVV 61 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + + G L D +F ++ + ++ E RV A Sbjct: 62 WINEAFSDLTSYTPDQCRGRRIGTLLKARSADPTHFTEFTEALARGQG--IKREVRVIAK 119 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + W+++ ++P+ + +G + ++ +A D+T + E Sbjct: 120 NAELGWVLVDMQPIRDEDGTMSGWVLVATDLTAVRTQQE 158 >gi|220908904|ref|YP_002484215.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] gi|219865515|gb|ACL45854.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7425] Length = 744 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 156/537 (29%), Positives = 272/537 (50%), Gaps = 18/537 (3%) Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 +LG ++ G +L + D + V L+ E V Sbjct: 186 VNSRGEKLLGKPRQAILGR---FLSELLPVDSSKQLIQKYTLVVETGQVLEEELPVNITP 242 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 W+ +I P+ + A DI+E+K+ + AF D LT +PNR F++ Sbjct: 243 LPITWLHHQIVPLGD------GIAITARDISERKQKEAELHRQAFYDPLTELPNRTYFMN 296 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 RLT +L+ + + V +D+D++K +ND LG +GD+ L ++ RR+ L+ D++ Sbjct: 297 RLTKVLERAGRRQDFHYAVFFLDLDRFKVVNDSLGHLLGDEFLKAIARRLSSCLREEDMV 356 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL G+ F I+L +N + A +++ ++ P L + E+ TASIG A TS Sbjct: 357 ARLGGDEFAILLEELSNPDIVHRIAERLQRVLSAPFTLKQHELFTTASIGIALGTSYYEQ 416 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 +L++A++AMY AK +G F + + R ++ DL A+E E LVY PI Sbjct: 417 PEAILRDADIAMYQAKTQGKARHIIFDQAMHTRAVKRWQLESDLRWAIERREFCLVYQPI 476 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + + E ++G EAL++W HP+ G IS +EF+ +AEE +I + ++L R + W+ Sbjct: 477 VSIQTERLIGFEALVRWHHPQRGWISPAEFISVAEETGLIIPLGHWVLWEGCRQLRQWQS 536 Query: 788 QAN-----MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 Q N PP+ + +N++SK +L +Q ++ +T + +KL +ES++M N Sbjct: 537 QFNLSPTAEPPLTVSVNLSSKQFCQPDLIHYIQQVLQQTGMEGTCLKLELTESILMENLS 596 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 + LL +L+++GI L LDDFGT S LSYL P D +K + S + G + + I+R Sbjct: 597 TATSLLVQLKELGIQLALDDFGTGYSSLSYLHRFPLDVLKIDRSFINGIEAETENLEIVR 656 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +I+ +A+++ ++A+ + + + L + C Y Q ++ PL + L+E Sbjct: 657 TILSLARSLNLQVVAEGVETQAQLDHLQALQCGYAQGYLISRPLTPEKTEQFLQEYL 713 >gi|134291097|ref|YP_001114866.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia vietnamiensis G4] gi|134134286|gb|ABO58611.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia vietnamiensis G4] Length = 837 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 148/597 (24%), Positives = 262/597 (43%), Gaps = 16/597 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVR 425 L+G +++ + + A + + +A + + + D Sbjct: 241 TGLLGFADVLLSIEHEYANELRSALRERDEALGLARFNLRMADRVFESALEGIMVTDRHA 300 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + G + G L + F L + G Q E Sbjct: 301 RIERVNQAFTRLTGYTEDEVVGRNPAMLSSGRQTPD----FYKQLWHSLTTD-GHWQGEI 355 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R + + I + ++ G+I Y I +DIT+++++ E + A D LT + N Sbjct: 356 WNRRKSGELFLEYLTITSIRDNAGEISHYAAIFSDITQRRQAEERLGYLATHDVLTNLAN 415 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R F +RL + + + VM +D+D++K +ND LG GD+VL + RI + Sbjct: 416 RALFEERLARSIVQAKRLGR-KVAVMYVDLDRFKLVNDTLGHNAGDEVLKVVAGRIAGQV 474 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 D +AR+ G+ F I+L ++ + A + + I + REI VT SIG + + Sbjct: 475 LSNDTVARMGGDEFAIVLEEFDDVRDVGRIARNLLDEVGQSIEIEGREIFVTPSIGISIY 534 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELY 721 I + +L A+ AMY AK+RG N + F S ++ +L A+E +E Sbjct: 535 PDDGIDAEHLLLLADQAMYGAKNRGRNVFQFFESKMTSSAIEQLETLGELHRALEQNEFR 594 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L Y P L IVG+EAL++W HP+ G ++ EF+ +AE +I I ++L+ R Sbjct: 595 LFYQPQYDLASGRIVGVEALLRWLHPRRGLVAPGEFIGLAERSALIVPIGRWVLQEACRQ 654 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W D+ + +N++++ + + ++S+T ++L ES+ M Sbjct: 655 ARRWLDEGFEFG-RVSVNVSARQCFTDHFLSDLTTILSETALPTKCLQLELLESMAMNTR 713 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899 E +LL L GISL +DDFGT S L YL +P DT+K + S +T + AI+ Sbjct: 714 EEIGILLRELAIRGISLAIDDFGTGYSSLVYLKDLPVDTLKIDRSFLTDCGTGSTDDAIV 773 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 R+I+ M + + ++ + + E + L +GC +Q +A P + + + R Sbjct: 774 RAIVAMGRALGLHVVMEGVETEQQLSFLQEIGCHQVQGFLLARPQPAEQLARSVSRR 830 >gi|47569796|ref|ZP_00240467.1| sensory box protein/GGDEF domain protein [Bacillus cereus G9241] gi|47553538|gb|EAL11918.1| sensory box protein/GGDEF domain protein [Bacillus cereus G9241] Length = 909 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 171/868 (19%), Positives = 349/868 (40%), Gaps = 30/868 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIIVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + L+E +D + + I I + A F +Y++ ++ I + Sbjct: 107 YLLFLISFAFAF-LYEIIHNRDLLEKLFMICDICI---IVTAQFTLSYYLLIERTIHISS 162 Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276 + +V L Y D F +NL L + L S+LI++ Y + Sbjct: 163 TSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + T + + + ++ + + + Sbjct: 223 YFIPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISVVM 282 Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 ++ I + + M + + +++ L+ + Q L T Sbjct: 283 LIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELRTE 342 Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + + D ++ D+ + + T+LG + + Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + D + + + E R + +++ + P+ N I Sbjct: 401 YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKN-HISG 457 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE K+ E I A+ D LT + NR++F + + S + VM + Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEIS-KMPFAVMFL 516 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + + Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPDVK 576 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + + + ++ SIG A + + +L++A++AMY AK++G N Sbjct: 577 KIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 636 Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 637 SSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHPLL 696 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G+I EF+ I EE + + ++L + W + I +N+++K+ N Sbjct: 697 GDIPPCEFIPIVEETPQVIPLGHWVLNESCHQLKIWH-TFGYKDLKISVNLSAKEFQQNN 755 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + + +I+ P + L +E + M + + + L +L++ GI ++DDFGT S Sbjct: 756 LIKNILQIITDVKVDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSS 815 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + AI+ +I+ +A + +++A+ I + +K L Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETQKQLKFL 875 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 C Y+Q + + PL + +K L++ Sbjct: 876 QNNNCKYMQGYYFSKPLTSHQFIKFLQK 903 >gi|307149961|ref|YP_003885345.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306980189|gb|ADN12070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 806 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 157/591 (26%), Positives = 284/591 (48%), Gaps = 15/591 (2%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L G + + ++ V + + +L ++ D + V Sbjct: 222 LALGQLSDGRRLVMSMASDVTERKNTENRLKEQADLLNLVYEA----IFVRDAHSEIVFW 277 Query: 431 TPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 + G G + + L F LD + G+ + E D Sbjct: 278 NQSAQQMYGWTEQEAKGKVTHSLLKTKFP----PFCDNLDEILRA-SGQWEGELTHTRRD 332 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 + R + +S G + + + DITE+K++ + NA D LTG+PNR ++ Sbjct: 333 GTQIIVDSRQVLVRDSQGQVKGILEVNRDITERKRTERKLYHNALHDALTGLPNRILLME 392 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 R+ + + N V+ ID+D++K IND LG VGD +LV++ R+ E ++ D + Sbjct: 393 RVEQAIQRAKRRKNYCFAVLFIDLDRFKNINDSLGHIVGDQLLVAIAHRLLECVRASDTV 452 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL G+ F I L + + + + + + E+ TASIG A + + Sbjct: 453 ARLGGDEFIIFLDELGQEKEAFKITERIIEQLKTSLFVDGLEVFTTASIGIAFNSDDNHS 512 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 ++E+L+NA+LAMY AK +G + + + ++ +L LA+E E L Y PI Sbjct: 513 ATEILRNADLAMYRAKEQGKARYAVYNAAMYTEAQTIWELENNLRLALERQEFLLHYQPI 572 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 L + ++G EALI+W HP+ G IS +F+ IAEE +I I ++L+ R W+ Sbjct: 573 FSLTTQTLMGFEALIRWQHPQQGLISPVDFIPIAEETGLIVPIGEWVLQESCRQFALWQQ 632 Query: 788 QANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 Q + I +N++ + L L + + ++ +T S + +KL +E+++M N E + L Sbjct: 633 QYPHISDLKISVNLSGRQLQTGNLIDLLDKILLQTGLSGNSLKLEITETLLMKNLESASL 692 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIP 904 LL +L++ I +++DDFGT S LSYL ++P +T+K + S +T E + + I+++II Sbjct: 693 LLSKLKERAIQVSIDDFGTGYSSLSYLCHLPVNTLKIDRSFVTHVNEIKENLQIVKAIIG 752 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +A+ +E ++A+ I + + L + C+Y Q + PL ++ LL++ Sbjct: 753 LARQLEINVVAEGIETQQHLDRLQELECEYGQGYLFSKPLEEKAVESLLEQ 803 Score = 65.0 bits (157), Expect = 6e-08, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 83/258 (32%), Gaps = 7/258 (2%) Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 + K + + + I ++ ++ + A L Y G A Sbjct: 3 TYNKAWEVAQAYLIAIGLVILAILLTLLLDPLLKTPLFAFFYLAVFLSTWYGGRPSGLTA 62 Query: 338 VLLIPAWILIFIWFIGLWMAITKR-LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 LL L + I + ++I+ VL++ + + Sbjct: 63 SLL---SYLAINYLIIAPRYVLGFKDIGELIRLGAFILFVLLISSLKKNLTTVERRLEKN 119 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + ER A+ + + + + + G + + I +W+ Sbjct: 120 LQTLQQSEERLQTALTNAPFPMIIHAENGQILQINRAWSELSGYSYAEI-PTIADWIQKA 178 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH-WMIIRIRPMSNSNGDILRYIGI 515 + + DN R ++ + EF ++ + + W + S+G L + + Sbjct: 179 YGRESDNMRDYIEQLYSLDERLDEGEFTIQTSTGEHRVWDFSSLALGQLSDGRRL-VMSM 237 Query: 516 ANDITEQKKSLEGILCNA 533 A+D+TE+K + + A Sbjct: 238 ASDVTERKNTENRLKEQA 255 >gi|67923273|ref|ZP_00516758.1| GGDEF [Crocosphaera watsonii WH 8501] gi|67854899|gb|EAM50173.1| GGDEF [Crocosphaera watsonii WH 8501] Length = 707 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 134/551 (24%), Positives = 252/551 (45%), Gaps = 28/551 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + V S + + + P ++ P H Sbjct: 165 LASVVELSPIPIVEINYEGTITYLNPS---------TNLKFPNLQKRQIKHP-----LLQ 210 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L Y G L +R D + I ++ +IT++K++ Sbjct: 211 GLLEKQDYNNGSLV----IREVDIENQSFEQHIHYLAQEQ----LIRSYIFNITQRKQAE 262 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + +AF D L G+PNR F + +++ ++ N ++ IDID +K IND LG Sbjct: 263 NELKHHAFHDGLIGLPNRNFFDQHI-SLISKNSQRYNKLFAILFIDIDNFKNINDTLGHN 321 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 +GD +L +R+ ++ D + R G+ F ++L N + A F+ + ++ P+ Sbjct: 322 IGDQILQYFAKRLNSHIRKSDFVCRWGGDEFVVLLGEIQNPDQAAKFSQRLLQTFEHPLQ 381 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + EI + S+G A + + +LKNA+ A+Y K G NH + + ++ Sbjct: 382 IEGHEIYLKCSVGIAIYPEDGQETEILLKNADAALYRTKESGRNHYQFYNPQMGVEIAEN 441 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ L AV+N E+ L Y P I + ++ GLEALI+W P+ G I +F+ +AE+ Sbjct: 442 FTLENQLHQAVKNGEMILHYQPQINIKTGQVYGLEALIRWKSPQLGLIKPGKFIPLAEKT 501 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + ++L+ + W+ Q +PP+ I +N++++ L L E ++ + Sbjct: 502 GLILPMGEWVLKTACQQNKKWQ-QMGLPPVIISVNLSAQQLQQPNLIETVENTLESVGLD 560 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P ++L +ES++M N ++ L LR++G+ +++DDFGT S L YL PFDT+K + Sbjct: 561 PKWLELEVTESMLMKNITIAKKTLQELREMGVYISMDDFGTGYSSLGYLKKFPFDTLKID 620 Query: 885 GSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + + I+ +I+ +++ +IA+ + + +K L + C+ +Q + Sbjct: 621 QSFVKELNQSSQDLHIISAIMTLSRGFNLRVIAEGVENQEQLKLLKELNCEEMQGYLFSR 680 Query: 943 PLGFNSILKLL 953 PL +LK L Sbjct: 681 PLSSEDVLKYL 691 >gi|26990037|ref|NP_745462.1| sensory box protein [Pseudomonas putida KT2440] gi|24984961|gb|AAN68926.1|AE016524_1 sensory box protein/GGDEF domain protein [Pseudomonas putida KT2440] Length = 733 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 155/630 (24%), Positives = 279/630 (44%), Gaps = 15/630 (2%) Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 +ER L + L W + L ++ + V + T + A Sbjct: 111 WERFRSLALGYNLRSCWSLPL-LSHEGSVLGTFALYQDQAIAPSEVQIHRLTCAAQLAAI 169 Query: 394 GYFS----QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 Q + +R + + V+ D + + P + A+ + G Sbjct: 170 AIRHERDGQRLEESEQRFRSLFTYNPNPVFALDRAGNIQSVNPAGLKLKAGAATDLVGH- 228 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 ++ + D + R E RVR + ++ NG+I Sbjct: 229 -HFSHLVFEEDLPKVNQHFFAARAGEPQRF--EARVRDESDDKQLIMDIANLPIMVNGEI 285 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + GIA DI++QK + NA D LTG+ NR S DRL S+ ++ VM Sbjct: 286 VGVFGIARDISKQKHYERQLSINASHDGLTGLLNRLSLEDRLVQAC-RSSRQRKVQLAVM 344 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ID+D +K IND +G GD VL+ + +R+ + ++ D + R+ G+ F ++L Sbjct: 345 YIDLDGFKSINDSIGHYFGDQVLIEVAQRLTQQVRPADTVVRMGGDEFVVLLTDLLRDED 404 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A + SI P + ++ V+ SIG ++++ A++AMY AK +G Sbjct: 405 AVPVAERLLASIGKPYCIQGIDLHVSTSIGITVSDGHIEQPMKLIQQADMAMYKAKQQGR 464 Query: 690 NHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N+ + + + + ++ DL A++ L Y P I +VG+EAL++W+HP Sbjct: 465 NNFQWYTSDLNHRVCEHRSLRNDLQKAIKTQSFSLHYQPQIEARTRRVVGIEALLRWEHP 524 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G IS + F+ +AE+ I ++L++L+ + DQ I + +NI+ Sbjct: 525 VRGFISPAVFIPVAEDSGQIIPLSLWVLDTACAQLRDLCDQGFN-GISMAVNISPMHFQC 583 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + E +QA++SK S +++L +ES+++ N E++ L RL+ +G+ + LDDFGT Sbjct: 584 GQFVECIQAVLSKHGLSAGQLELEITESLLLHNVEQAIATLHRLKDLGVRIALDDFGTGF 643 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL +P D +K + S + AI + II MA ++ +++A+ + + Sbjct: 644 SSLSYLKCLPIDKIKIDRSFIQDISTNPHDAAITQGIISMAHHLSLSVVAEGVETAPQVN 703 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R CD +Q + A P+ ++ L + Sbjct: 704 FLERGRCDILQGYYFARPMSHEALRTFLAD 733 >gi|253995514|ref|YP_003047578.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253982193|gb|ACT47051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 934 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 143/670 (21%), Positives = 280/670 (41%), Gaps = 22/670 (3%) Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 + S+A ++ + R ++L P + + Sbjct: 269 VIVAYPLSEARAVSLANAWFVVFAGILLGTLLIVIILWQLRRLILNPIGGDPALAIDVVK 328 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVL 412 L D ++ ++ L + + ER L Sbjct: 329 RIAAGDLAQD------GLNAKPDTLMASVLEMRQKLRESI--DTLRQNAERMRLSASVFD 380 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + D ++ D + V I G G I L ++ +D + +L Sbjct: 381 HAHDGIFITDPHANIVEVNYAFTQITGYTRNGALGRIPQELGFVTYDD--SLLDVLW-LQ 437 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + E R + + + I + + + ++G+ +DIT+ K+ + + Sbjct: 438 AESNSEWRGETWCRRKNGDVYAAWLDIFCVRDEANQVKNFVGLFSDITQAKEQQQNLERM 497 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A+ D LT +PNR DRL L + L V +D+D +K +ND LG GD +L Sbjct: 498 AYHDPLTQLPNRALLSDRLQQALARAERSGEL-LAVCCLDLDGFKPVNDTLGHEAGDYLL 556 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 V L R+ L+ D +ARL G+ F ++L + + + I P ++ ++ + Sbjct: 557 VQLAVRMSACLRDSDTVARLGGDEFAVLLCGLQSIDECTQTLERLLSVIKTPYSIGDKSV 616 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710 TV++SIG+ + +L++A+ AMY AK GG+ V+ F R R +E Sbjct: 617 TVSSSIGYTIFPDDGCEPDTLLRHADHAMYQAKLNGGSRVQQFDSHHDRQFRGLRQDRER 676 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 + A+ N E L Y P + L ++VG+EALI+W+HP+ G S + F+ I E + Sbjct: 677 VEAALSNQEFRLYYQPKVDLRQGKVVGMEALIRWEHPELGLRSPATFLPIVENTDFSIPL 736 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIK 829 +++ I W+ + +NIA++ ++ + E + L+++ +P +I+ Sbjct: 737 GEWVISEALGQIRVWQAAGLD--FQVSVNIAARHIVQSNFTERLVLLLAEFPEVAPHKIE 794 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +E+ + + + +++G+S LDDFG S L+YL +P +T+K + S + Sbjct: 795 LEITETAAIEDVSGVANTINTCKQLGVSFALDDFGVGYSSLTYLRRLPVETIKIDQSFVR 854 Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 +A++ +I ++++ + ++A+ + L RMGC +Q VA P+ + Sbjct: 855 DMLQDVDDLAVVAGVISLSRDFKRKVVAEGVENSEQGLWLLRMGCSVVQGYGVARPMPAD 914 Query: 948 SILKLLKERF 957 + + ++ Sbjct: 915 EVQQWVESYQ 924 >gi|228930357|ref|ZP_04093361.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829343|gb|EEM74976.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 677 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 146/562 (25%), Positives = 269/562 (47%), Gaps = 11/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R D V+ ++ + ++ + + L +I Sbjct: 120 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQHSNKACESLF--TAYYCEVASYSLLHFIDS 177 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D D + L R L E R + + ++++ I + P N +++ GIA D Sbjct: 178 KDHDLLKKALQITKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARD 234 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D++KK Sbjct: 235 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKK 293 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L+ + +R+ L+ D++AR G+ F I+L + A A + Sbjct: 294 INDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQIL 353 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + + E+++T SIG A + +E++KNA++AMY AK G N F Sbjct: 354 NILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKE 413 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++ Sbjct: 414 MSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQ 473 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I + ++L + W +Q + + +N++ +L + Sbjct: 474 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 532 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL Sbjct: 533 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 592 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + G + AI+ SII ++K + +IA+ + E K L CD+ Sbjct: 593 PINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDH 652 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ + +LL ++ Sbjct: 653 IQGFFISKPVSSKDVWRLLHKK 674 >gi|95928550|ref|ZP_01311297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95135340|gb|EAT16992.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 791 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 149/756 (19%), Positives = 288/756 (38%), Gaps = 27/756 (3%) Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284 + ++ L + ++L + R I + +I R Sbjct: 37 VLSIAILLTALGLGLQQQLHLSENTTSLARFLLVILFCAGVIKIYHSRRSTQRNANHDSR 96 Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL---LI 341 M Y A S++ Y + + + + + Sbjct: 97 PEQFYAFFQHGGAGMYSYDTAGRILNANPAFCSMIGYSEHELKSMTILDVTPPQVRDETL 156 Query: 342 PAWILI---FIWFIGLWMAITKRLDNDIIQPALVGGLVLIV-ILIGFTVIQHVLATGYFS 397 + + +I +V + ++Q + Sbjct: 157 NRLARFRDKLNEPCNFEKTYLCKDGSTLIGHFTGKWIVSDNDSIYAVALVQDITEHKNAD 216 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 Q + + E + G D + + ++ H Sbjct: 217 QAVLKEREFLQTVIDGIADPIMAISTDYHVILANRAARE--SHPEHALQPGPTLCYQLSH 274 Query: 458 INDRD----NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 +D N + L + + + +RA + I+ P+ N + I I Sbjct: 275 GSDTPCSDTNQKCPLCQVLKTGKEAREIHEHLRAGH-EKRTYEIKASPLYNEDHSIRGII 333 Query: 514 GIANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + D+T E + + + D LT +PN++ F DRL + Sbjct: 334 ETSRDLTDILNSEAELNEKTQHLQFVTTHDQLTHLPNKELFFDRLERATFKTHRSP-FFT 392 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ ID+D++K IND LG +GD +L + +R+ ++ D LAR+ G+ F II+ Sbjct: 393 ALLFIDLDRFKHINDSLGHEIGDQLLQEVAKRLSTSIRKTDTLARMGGDEFLIIIEDIKE 452 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A +I + E+ +T S+G + + E+L AE+AMY AK Sbjct: 453 LSHVSTVAKNFIDTILPSFTIDGHELFITPSMGISIAPTDTQHPKELLAFAEIAMYQAKG 512 Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 GGN + + ++S R+ ++ L AV + L Y P + E+VG EAL++W Sbjct: 513 LGGNKCQFYTAEMNSRAKTRIELESYLRKAVNQDQFVLYYQPQFDIQSGELVGCEALLRW 572 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G IS ++F+ +AEE +I I ++L+ W+D PI + +NI+ + Sbjct: 573 QHPQMGMISPNDFIPLAEETGVIIEIGEWVLQEACLQNKKWQDA-GHSPIRVAVNISPRQ 631 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + E ++ ++ T P ++L +ES++M + + + +L +L+ GI L +DDFG Sbjct: 632 FREPGFLEMIERVVQTTGIKPEWLELEITESLLMDDIDSAINILKQLKAKGIHLAIDDFG 691 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL P +K + S + + +I +++I +A ++ ++A+ I + Sbjct: 692 TGYSSLSYLKRFPLSRLKIDRSFVRDITTDDNDASITKAVIALAHSMNLKVVAEGIETQE 751 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + L GC+ Q + P+ + P Sbjct: 752 QLLFLKEKGCEVGQGYLYSPPVAKEPFDHFFTDGSP 787 >gi|89902336|ref|YP_524807.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89347073|gb|ABD71276.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 658 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 132/549 (24%), Positives = 253/549 (46%), Gaps = 12/549 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTIL 468 + + + D + V P + I G ++ + H D + + Sbjct: 111 VFDSTREGLMVTDSAQRIVRINPAFSEITGYSAADVLDQTPALLRSGRH--DSAFYAAMW 168 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 DS G Q E R +++ + +I I + + G + Y+ + D+++ + S Sbjct: 169 DSI--NVSGHWQGEVWNRRKNSEIYPQLISIDVIRDHTGRVCNYVAVLTDLSKLRSSQLE 226 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LT +PNR L RL ++L+ D ++++D+D++K IND G VG Sbjct: 227 LDFLAHHDPLTRLPNRLLLLSRLQHGIELAQRD-GTHLALLMLDLDRFKDINDSFGHLVG 285 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D++L + R+ + ++ D + R G+ F +++ + + A A + + ++ P L Sbjct: 286 DELLQLVATRLVKQVRTIDTVGRFGGDEFSVLMEDVAGAEQAARVANDIIRVLSEPYGLS 345 Query: 649 -EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRV 705 E+ + AS+G + + + +T ML+ A+ A+Y AK G F S R+ Sbjct: 346 SGVEVRIGASVGISIYPDNGLTPELMLQQADSALYQAKIEGRGRFAYFSESLTQAARARI 405 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 I+ L A+ EL + Y P + + IVG EAL++W P G + + F+ IAE Sbjct: 406 DIEVRLRRAITQGELRVYYQPQVDIPSGRIVGAEALVRWQCPIEGLVPPARFITIAEATG 465 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I+ ++L + WR P + + +N+++ L ++ + + ++ T Y Sbjct: 466 LIGEIDDWVLRETCQQGQRWRAAGL-PTLTLAVNLSAYQFLQGDISQTVAQVLRDTGYPA 524 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 + ++L +ES +M ++ +L RL+ +G+ L +DDFGT S L+YL P D +K + Sbjct: 525 AFLELELTESALMQREAQAIQMLDRLKALGVRLAIDDFGTGYSSLAYLKLFPLDVLKIDK 584 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + + I+ +II MA ++ ++A+ + + + L GCD Q + P Sbjct: 585 RFIDDIPAHRDDMEIVTAIIAMAHSLRLKVLAEGVENKEQLAYLQTQGCDQFQGYLTSRP 644 Query: 944 LGFNSILKL 952 + KL Sbjct: 645 VPAAEFEKL 653 Score = 42.2 bits (98), Expect = 0.43, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 25/117 (21%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 L + D + D + + G + G + IH Sbjct: 8 FQLILTTISDGIVVVDQRGVVLYANESAERLF--ERGELVGK--DLAVPIH--------- 54 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 G + + + W +R P++ + I + DITE+K Sbjct: 55 ---------SGETRQDINLIRPSG-IGWAELRSAPITW-DKQPAFVICV-RDITERK 99 >gi|238759090|ref|ZP_04620259.1| Sensory box-containing diguanylate cyclase [Yersinia aldovae ATCC 35236] gi|238702638|gb|EEP95186.1| Sensory box-containing diguanylate cyclase [Yersinia aldovae ATCC 35236] Length = 855 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 143/584 (24%), Positives = 274/584 (46%), Gaps = 20/584 (3%) Query: 383 GFTVIQHVLATGYFSQ----GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 G+ VI+ +A + + + ER + D +W+ D + I Sbjct: 282 GWRVIRRAIAEAQVADDNKTALTASEERFRHVAESATDWLWETDTELRITYLSQRFLIIT 341 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 GL+ G + ++ + + + + R LQ + +A I Sbjct: 342 GLSIEHWMGRNLD--SLLNCDIIPLRSWLQHTHLAESRNELQCTY--FSAKGDRRICRIY 397 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 +P+ N++ + + Y G A+DIT + ++ E I + D LTG+PNR + L L Sbjct: 398 AKPIINND-ETIGYRGTASDITSEIEAQERIQHLSMHDALTGLPNRIRMKEFLENKLRNL 456 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + V+ +D+DK+K +ND G GD VL ++ R+ L+ D++AR G+ F Sbjct: 457 SVAQH-PLVVLNVDLDKFKPVNDTYGHVTGDTVLHQVSERLRSCLRDQDMVARHGGDEFV 515 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 +I+ ++ +I + I P + ++I + ASIG A I + E+L+ A+ Sbjct: 516 LIITGLSSVKEIEQLCARVITRIEAPYVVDAQDIYIGASIGIALAPQDSIQAEELLRFAD 575 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK G N + ++ L AV+N E L Y P R+ ++ Sbjct: 576 IAMYEAKSNGRNCWSFYSSEMNERLMQRSELERFLRQAVKNREFSLYYQPRYRIEGIQLT 635 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W+HP G + +F+ +AEE +I +I+ + + + +D I+W P + + Sbjct: 636 GAEALVRWNHPVLGLLMPDQFIALAEETGLITSISDWTMLQACKDAITWH-----PSLIV 690 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +NI++ + L E ++ ++ T R++L +E +++ + + + ++ L+ +G+ Sbjct: 691 SVNISAVEFRSQHLIERVRQVLRLTGLPSHRLELEITERIMIEDADGAFKIMTALKALGV 750 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L +DDFGT S L+YL PFD +K + S + + + +I+ II + + T+ Sbjct: 751 RLAMDDFGTGYSSLNYLRRFPFDALKIDKSFIDELAESHEGQSIVEGIINLGHALTMTVT 810 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL-LKERF 957 A+ + + L + CD +Q ++ P+ + + L L ER+ Sbjct: 811 AEGVETAEQLGYLRNLKCDEVQGYFLSKPMQLDDLSALMLNERY 854 >gi|160896650|ref|YP_001562232.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160362234|gb|ABX33847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Delftia acidovorans SPH-1] Length = 692 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 134/585 (22%), Positives = 257/585 (43%), Gaps = 19/585 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 I V + +Q + ER + + + + ++ + G Sbjct: 119 VVQITDVSHHHHVAQKVRDSEERMRKFTEVTTEAI-VMHRDGLIIDGNEALSRLAGYTLD 177 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G L YI R L R R ++ D + I + M Sbjct: 178 ELTGRPI--LDYICPEFR---LYALQYMRSGREDRFDGA--IQHKDGHRIPVEIEAKTMP 230 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G+ R + + DIT ++ + E + A D LT +PNR + L L L++ Sbjct: 231 -AEGEPYRIV-LVRDITLRQLAQERMDFLAQHDQLTQLPNRVRLIQMLRQALSLASVKRR 288 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V++ID+D +K IND LG GD +L + +R+ ++ D++AR+ G+ F ++L Sbjct: 289 A-LAVLIIDLDHFKTINDSLGHQAGDLLLCEVAQRLRGSVRAHDLVARVGGDEFVVVLTD 347 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + + A +++ I P + + ++ +G A + + E+L AE AM+ Sbjct: 348 DPDPQETETQASHLQRIIEAPCAIDGTPLVISPCMGIAMYPGDGKNAEELLNRAESAMHM 407 Query: 684 AKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 AK G +++ + + ++ +M ++ L A+E E L Y P D + G E Sbjct: 408 AKDSGRRNLQFYAPAQDGQATQAQMLMQEQQLRGALERGEFELYYQPQTFTADGRLAGFE 467 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W HP+ G + EF+ AE +I AI+ ++L R W+D+ P+ + +N Sbjct: 468 ALVRWRHPQRGLVLPGEFIGFAEARGLISAIDHWVLREACRQARQWQDEGLA-PVPLSVN 526 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++ + ++ + ++ +T + + +ES +M + + L L+ +G+ L Sbjct: 527 LSALEFRQRDMAREVAQVLEETGLEARWLHIELTESTLMHTSGQVQDTLQALQALGVGLA 586 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P + +K + S + +E AI+ +I+ M ++ I+A+ Sbjct: 587 IDDFGTGYSSLAYLRRHPINQLKIDRSFIADVPDSEDDTAIVTAIVQMGHSLHLDIVAEG 646 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL-LKERFPLVK 961 + + L +GC +Q VA PL L P+ + Sbjct: 647 VETPAQLALLRELGCGMMQGYLVAPPLPAERARAWQLHNSHPVQR 691 >gi|332530469|ref|ZP_08406410.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] gi|332040038|gb|EGI76423.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] Length = 702 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 139/557 (24%), Positives = 266/557 (47%), Gaps = 11/557 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFR 465 + + ++ + P +A + G + ++ ++N +++ ++ R Sbjct: 132 YRHIFEHASEGIFQSTPEGHYLEVNPALARLYGYENAQALITGLQNISRQLYV--KEGQR 189 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + + L +E + AD W+ + ++ G++L Y G DI+E+++ Sbjct: 190 ELFRQIMAEQGEILNFESEIYRADGSRIWISENAHTVCDAEGNLLYYEGTVQDISERRRY 249 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + + A D LTG+PNR DR+ + + V+ ID+D +K IND LG Sbjct: 250 QQELEHQANHDTLTGLPNRMLLSDRVEQGIARAERL-GYHLVVVFIDLDHFKFINDSLGH 308 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD++L + R+ ++ D +ARL G+ F ++L S + D + I+ P+ Sbjct: 309 DAGDELLKEVALRLRRCVRASDTVARLGGDEFVLLLADHFRSSTVIDQLQRVLSEISQPV 368 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703 L RE V AS+G A + + + K+A+ AMY AK G N+ + F + ++ Sbjct: 369 QLSGREFQVGASLGVAMYPGDGEDALSLFKHADAAMYAAKGNGRNNFQFFTRELNHVATE 428 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R+ ++ L A+++ + Y P + I+G+EAL +W P++G IS F+ IAE+ Sbjct: 429 RLHLEAALRHAIDHDGFEVHYQPKTD-ANRRIIGMEALARWRPPEYGPISPDRFIPIAED 487 Query: 764 LCMIKAINLFMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 +I + + +L+R W P+ I +N++ + L +++ + L+ Sbjct: 488 SGLILPLTMTILQRAFVATRRWNEGRDLKRNPLRIAVNLSPRLFLSDDIVSHVHRLLRDA 547 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 SP ++L +E+V M ER L + +++G+ L +DDFGT S LSYL P D + Sbjct: 548 DLSPELVELEITETVFMSRSERVLETLIQFKQLGLQLAMDDFGTGYSALSYLRRFPLDII 607 Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + SL+TG + I R+++ + +++ T++A+ + + L GCD Q Sbjct: 608 KIDRSLVTGIEREEEVAMIARAVLSLGQSLHKTVVAEGVENQAQFDFLRSQGCDEFQGYL 667 Query: 940 VASPLGFNSILKLLKER 956 ++ PL + +LL+ Sbjct: 668 LSRPLSEAGMSELLQSH 684 Score = 68.8 bits (167), Expect = 5e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 9/113 (7%) Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTI 467 +A D W V + + G + + +W H DR+ RT Sbjct: 12 MAYRCLNDAHWT------MVFVSQGCLALTGYTPQELVHNAVVSWEQITHPLDRERVRTS 65 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + R ++R+ + D W+ R +++ G ++ G D+T Sbjct: 66 V-ATTSSTNLRFAVDYRIVSKDGTVKWVHERGVAVADEQGTLV-IEGFIEDVT 116 >gi|172065448|ref|YP_001816160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria MC40-6] gi|171997690|gb|ACB68607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria MC40-6] Length = 837 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 146/592 (24%), Positives = 261/592 (44%), Gaps = 26/592 (4%) Query: 378 IVILIGFTVIQHVLATGYFSQ---GIFSDGERQSLA----------VLGSGDIVWDWDIV 424 + L+ F + + Y ++ + E LA + + + D Sbjct: 240 LTGLLCFADVLQSIEHEYANELRSALRERDEALGLARFNLRMADRVFESALEGIMVTDRH 299 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYE 482 + G + G L + F L + G Q E Sbjct: 300 AKIERVNQAFTRLTGYTEDEVVGRNPGLLSSGRQTPD----FYKQLWHSLTTD-GHWQGE 354 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 R + + I + +S G+I Y I +DIT+++++ E + A D LT + Sbjct: 355 IWNRRKTGELFLEYLTITSIRDSEGEISHYAAIFSDITQRRQAEERLGYLATHDVLTNLA 414 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F +RLT + + + VM +D+D++K +ND LG GD+VL + RI Sbjct: 415 NRMLFEERLTHAIVHAKRLGR-KVAVMYLDLDRFKLVNDTLGHNAGDEVLKMVAERIVAN 473 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 ++ D +AR+ G+ F ++L ++ + A + + I++++R+I VT SIG + Sbjct: 474 VRANDTVARMGGDEFALVLEEVDDVRDVGRVARKLLDEVGRAIDIVDRQIFVTPSIGISI 533 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSEL 720 + + +++ A+ AMY AK+RG N + F S ++ +L A+E +E Sbjct: 534 YPDDGTEAEDLILLADQAMYGAKNRGRNVFQFFESKMTSSAIEQLETLGELHRALEQNEF 593 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P L IVG+EAL++W HP+ G + +F+ +AE +I I ++L R Sbjct: 594 RLFYQPQYDLASGRIVGVEALLRWLHPRRGLVPPGDFIGLAERSALIVPIGRWVLHEACR 653 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 W D+ + +N++++ + + ++S+T ++L ES+ M Sbjct: 654 QARCWLDEGFAFG-RVSVNVSARQCFTDHFLSDLTTILSETALPAEYLQLELLESMAMNT 712 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAI 898 E +LL L GISL +DDFGT S L YL +P DT+K + S +T S AI Sbjct: 713 REEIGILLRELATRGISLAIDDFGTGYSSLVYLKDLPVDTLKIDQSFLTDCGSGSTDDAI 772 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 +R+I+ M + + ++ + + + L +GC Q A P + ++ Sbjct: 773 VRAIVAMGRALGLDVVMEGVETAKQLAFLQEIGCHQGQGFLFARPQPADRLV 824 >gi|310780005|ref|YP_003968337.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ilyobacter polytropus DSM 2926] gi|309749328|gb|ADO83989.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ilyobacter polytropus DSM 2926] Length = 799 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 144/579 (24%), Positives = 264/579 (45%), Gaps = 14/579 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGL 440 I + + + F E ++ D+ + G Sbjct: 228 IVIGTLYDITRQKSAEESAFKKEEEYRKIFQNHNAVMLMIDVQTGEIVDANNAAVKFYGW 287 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + + N+ ++ ++ FR R AD + Sbjct: 288 TRKELTKMKIADINILTENE---IYKEMEMARRNKKNYF--TFRHRLADGSIRDVEAYSG 342 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + G R I +DIT+++++ + I AF D+LT +PNR+ F D L + Sbjct: 343 EIIS--GKRPRLFSIIHDITKRREAEKKIKNLAFYDSLTNLPNRRMFSDYLEKSIVQGQR 400 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 +D + ++ ID+D +K +ND G +GD +L+ + R+ L+ +I+ RL G+ F +I Sbjct: 401 ND-FQVALLNIDLDHFKHVNDSFGHHIGDLLLIRVAERLRRNLRKNNIICRLGGDEFAVI 459 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + ++ +I + + K + P + ++EI ++ASIG A + + +LKN++LA Sbjct: 460 IEEFSSRQEINFVSGRILKVLEAPFLIDDKEIFISASIGVAVYPEDGSDVNTLLKNSDLA 519 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK RG N F + ++ D L ++ N EL L Y P I + +I+G Sbjct: 520 MYGAKDRGKNGYYFFSEDMKHASNSKMEIDTNLRKSLINGELCLYYQPKIDIAQNKIIGT 579 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 E L++W + SEF+ IAE I I+ ++L R I W ++ N+ I + Sbjct: 580 ETLLRWFKNGKIYKAPSEFIPIAESTGFILEIDRWVLLSACRQIEEW-EKNNIKGQKISV 638 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI+ + + + ++ K I++ +E V M N E + +L +LR +GI + Sbjct: 639 NISGLHFKQGLIIKTVTEVLKKVKIPKDSIEIEITEGVFMENMEEAVGILNQLRSMGIGI 698 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S LSY+ +P + +K + S + ++K AI +++I MAK ++ +IA+ Sbjct: 699 SIDDFGTGYSSLSYIKNLPINRIKIDKSFIFNMIDSKKDTAIAKTVITMAKLLDLYVIAE 758 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +K L+ GC+ IQ + + PL K K+ Sbjct: 759 GVETSEQLKILSENGCNEIQGFYFSKPLSPEEYEKFFKK 797 Score = 58.0 bits (139), Expect = 7e-06, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 8/115 (6%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 SG W++D+ + V ++ I G+ ++ P R+ + Sbjct: 137 SGFGYWEFDLDNNTVKSSKGSRKIYGITEETLMVDNIKEYPL--PEYRERLDKAFKDLIT 194 Query: 474 YRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 R+ EF+++ D + + + +I IG DIT QK + E Sbjct: 195 GRKN-YNVEFKIKNKIDGEIRAIHSVAE--YDPKRNI--VIGTLYDITRQKSAEE 244 >gi|167625007|ref|YP_001675301.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis HAW-EB4] gi|167355029|gb|ABZ77642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella halifaxensis HAW-EB4] Length = 1017 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 153/559 (27%), Positives = 259/559 (46%), Gaps = 12/559 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + + S + + D + I G + + L Sbjct: 450 QVEDSLKLAASVYNNSSEAMSVQDGQGFIININAAFTDITGYSEAEVKQQNIKILQC--- 506 Query: 459 NDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +R+N RT + GR + E +R + + + + + + ++ +L + + + Sbjct: 507 -NRNNLRTYEQMNLAVEEHGRWEGEVWLRRKNGEEFVVWLTLNALFDAKDQVLHRVALFS 565 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+K++ + I A D LTG+PNR+ LD L+ + S + +M ID+D +K Sbjct: 566 DITEKKQAEQIIWKQANYDPLTGLPNRRMLLDYLSAEILKSDCREQ-HFAIMFIDLDYFK 624 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 ++ND LG +GD +L +R+ ++ D++ARL G+ F ++L + + + + A + Sbjct: 625 EVNDTLGHDMGDMLLSEAAKRLKACIRDTDVVARLGGDEFTVVLPNITDIKGVDNVAKHI 684 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 IA P NL E ++ASIG + T +LK+A+ AMY AK G N F Sbjct: 685 LARIAEPFNLGEETAYISASIGITLYPDDASTIEGLLKHADQAMYAAKDEGRNRFHYFTA 744 Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S R R+ + +DL A+ N+E L Y PI+ L E + EALI+W HPK G +S Sbjct: 745 SMQRYAKHRMRLIQDLRHAIVNNEFELFYQPIVSLQQESKLKAEALIRWRHPKRGLVSPI 804 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGM 814 EF+ +AEE +I I ++ ++ AR WRD+ + + I IN + D E E Sbjct: 805 EFITVAEETGLIIEIGNWVFQQAARQSALWRDRFGVE-VQISINKSPVQFRDEGESFESW 863 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 AL+ S + I + +E +++ L + R+ GI ++LDDFGT S L+YL Sbjct: 864 AALLKTLNLSNNNICIEITEGLLLDGNSAISSKLAQYRQSGIQVSLDDFGTGYSSLAYLK 923 Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 D +K + S + +II MA + +IA+ + + K L+ GC Sbjct: 924 KFEIDYLKIDQSFTRNLDSNSDDFTLCEAIIVMAHKLGMKVIAEGVETDYQRKVLSDAGC 983 Query: 933 DYIQDSHVASPLGFNSILK 951 DY Q + P+ + Sbjct: 984 DYGQGYLFSRPVPVEEFEQ 1002 Score = 108 bits (269), Expect = 7e-21, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 2/156 (1%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V L+ + H L + + S E+ SL + S WDWDI D + A +L Sbjct: 305 VELVITGLQNHTLQKEAEIEKLASQ-EQLSLVLGSSELGFWDWDIHSDIIERNEHSAKLL 363 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G +++ + W IH DR +D+ + + + E+R+ N+ W++ Sbjct: 364 GCDVETLNREQKRWTNAIHSEDRATVLKSIDAILNGETDQYKLEYRIHNQSNETLWILDL 423 Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + M + +G +R GI DIT++K+ + + A Sbjct: 424 GKVMSRDESGSPIRMCGIHTDITDRKQVEDSLKLAA 459 Score = 64.2 bits (155), Expect = 1e-07, Method: Composition-based stats. Identities = 37/335 (11%), Positives = 99/335 (29%), Gaps = 25/335 (7%) Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPS-------GELLIWRACSEIALSSSLIIFLFM--- 271 ++ + + + + + + I +S L+ + + Sbjct: 5 LILSLIQNTALLLAIVLVYDAFPRTQKRSLAILWRVGSGFFVAVITISLMLMPWQYSDGI 64 Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 +L V + F GI + + Y ++ + + + I Y Sbjct: 65 FLDSRTVILSVCGLFFGGIPTLVAVVLSCLY--RLSEGGIAVWSGVGTIVTSGLIGYLWG 122 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 K + + I L+ + +A+ L + + I +LI F +L Sbjct: 123 KYRKGDIEDISISELLAFGLMTNSVALLWGLTMPTEMAIDLLKQITIPLLIIFPTTTVLL 182 Query: 392 ATGYFSQGIFSDGERQSLA--------VLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + ++ L + + + + P+ +L + Sbjct: 183 GLLLSRRIEIEREQKLKLQDHLLFKSHFKAGNMGIAITNKDHEWIKVNPNFCEMLKYSEQ 242 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G +W + D ++ + + + + R+ + D + + + Sbjct: 243 ELLG--LSWPELMLQQDFHLYKHHFNQMLKGDINEFELDIRLISKDEAIVYTYMTVACQR 300 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + + + I + T QK++ I A Q+ L Sbjct: 301 SQS-KVELVITGLQNHTLQKEA--EIEKLASQEQL 332 >gi|153840412|ref|ZP_01993079.1| MorA [Vibrio parahaemolyticus AQ3810] gi|149745925|gb|EDM57055.1| MorA [Vibrio parahaemolyticus AQ3810] Length = 591 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 140/552 (25%), Positives = 259/552 (46%), Gaps = 17/552 (3%) Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + SLA S + + D + + + I G ++ + G N L H +D Sbjct: 47 QLSLASKIFNNSQEGMVITDSNANIIDVNNAFSQITGFSAEEVIGKNPNILRSGHHDD-- 104 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F L + + G+ + EF R D + + I + + ++ YI + DI+ + Sbjct: 105 AFYQQLWQQLETK-GQWKGEFINRKRDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 163 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K E + AF D LT +PNR + L +++ + +DID +K IND Sbjct: 164 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQ-----PFATLFLDIDHFKHINDS 218 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G GD +L L R+ ++L +AR+ G+ F I+L + + + ++ Sbjct: 219 MGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGDSPLLETLSSILGVFR 278 Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699 P +L + + ++ SIG A + + S +LKNA+ AMY AK G N + Sbjct: 279 RPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 338 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 V I+ L A+E +L+LVY P L I+G+EAL++W+HP++G + ++F+ Sbjct: 339 KSVSHVRIQSALHEAIEKEQLHLVYQPQYNLAQNAIIGVEALVRWEHPEFGLVPPADFIP 398 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAE+ +I+ I ++L+ W + I +N+++ L + ++ ++ Sbjct: 399 IAEKTGLIQNIGEWVLKDACLQGTDWLARGVQFG-KIAVNVSALQLQQSRFINKLKTILR 457 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + ++L +ES ++ +P+ + L +L ++GI ++LDDFGT S LSYL +P + Sbjct: 458 ETGFPAHHLELEITESFLLIDPKLAIASLNQLCELGIEISLDDFGTGYSSLSYLKGLPIN 517 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ + AI+ +II M + ++A+ I + L GC Y Q Sbjct: 518 KLKIDRSFVSDVPNDNDSNAIVNAIIAMGTTLSLKVVAEGIETPEQVAYLVDKGCIYGQG 577 Query: 938 SHVASPLGFNSI 949 + P+ + Sbjct: 578 YLFSPPVAAKKL 589 Score = 39.2 bits (90), Expect = 3.5, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 E R +N W+ P+ N GD++ +G+ +IT ++K +E L A Sbjct: 1 ECRQIDENNNPTWLETIKSPVRNQAGDLIGILGMTRNIT-RRKMVETQLSLA 51 >gi|256823698|ref|YP_003147661.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256797237|gb|ACV27893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Kangiella koreensis DSM 16069] Length = 1515 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 142/563 (25%), Positives = 271/563 (48%), Gaps = 14/563 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + ++ S+ V D VW D + I G + G + Sbjct: 942 ELKNTEQQLSMIVKSFDNISDGVWILDENFHYIAVNKAFTKITGFDESEVLGKLMKVSSL 1001 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 I D D F + + +G E + D + + I I + +++G+I+ Y+G+ Sbjct: 1002 HQITD-DEFYDLRNELTE--KGFWYGELVAKRKDGDTYPIEINIDVVRDNDGEIINYVGV 1058 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DIT +K++ + A D LT + NR SF +++ S + ++ ID+D Sbjct: 1059 FSDITFRKQAERELRRLATVDQLTDLKNRTSFRTLFEHLIEDSGR--GDQHALLFIDLDN 1116 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG +GD++L+ + + + E++ ++ARL G+ F ++L + K A A Sbjct: 1117 FKRINDSLGHGIGDELLIYVAKILQEIVSDQNGVVARLGGDEFTVLLQEVDTWNKPAKIA 1176 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 A+ A + L E+ V+ SIG + + ++ E+LKNA+ AMY+AK +G N + Sbjct: 1177 QAILDEFAKSLPLSTAEVVVSPSIGIVMYPENGTSAEELLKNADTAMYYAKKKGKNTYQF 1236 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + ++ ++ +L A+E E + Y P + L +I G+EAL++W +P+ G + Sbjct: 1237 YTRQMNEQAKLRITLESELRQAIEKDEFVMFYQPKVSLQTGKITGMEALVRWRNPRRGLV 1296 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 EF+ +AEE I I+ ++E+ I W+++ + +N+++ L E Sbjct: 1297 LPGEFIPLAEEAGFIIPISQRVIEKTCLQIRDWQNRGIFHG-KVAVNLSAVQFYHENLWE 1355 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ + P ++ +E +VM + +S + LR++GISL LDDFG S L Sbjct: 1356 TVKNALHLAKIEPDALEFEITEGMVMEDLAQSLQQMRTLREMGISLALDDFGVGYSSLGN 1415 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P DT+K + + + +++ ++ SI+ +A N++ ++A+ + + L M Sbjct: 1416 LKDFPIDTLKIDRTFVWDLEDSDRDRNLVASIVTLAHNLDIKVVAEGVENRNQVDALREM 1475 Query: 931 GCDYIQDSHVASPLGFNSILKLL 953 GC+ IQ + P+ I +L Sbjct: 1476 GCEEIQGFIFSRPVPPWDIETML 1498 Score = 111 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 5/176 (2%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 + + G LI++ + + + + + ER L++ GSGD Sbjct: 781 TSGWLTPSAFTLYGFILG--LIILAFSYLIWARMRERRMAALQLTQSEERLKLSLWGSGD 838 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 +WDW + + + + + IH ND R L++ + + Sbjct: 839 ELWDWQVQSGALHLSNEWP--YDFPRDGIRSGYSMANSNIHPNDLPYVRQSLNAHLADKS 896 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILC 531 + +R+ + W++ R + + + N LR G +ITE K + + + Sbjct: 897 MHYESTYRISDEHGGWIWVLDRGKVVSRDENQKPLRMAGTLKNITELKNTEQQLSM 952 >gi|119478224|ref|ZP_01618280.1| hypothetical protein GP2143_06779 [marine gamma proteobacterium HTCC2143] gi|119448733|gb|EAW29977.1| hypothetical protein GP2143_06779 [marine gamma proteobacterium HTCC2143] Length = 760 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 176/755 (23%), Positives = 319/755 (42%), Gaps = 23/755 (3%) Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274 + + ++ L +V L + A SL F + Sbjct: 15 DGLFKLYPISISSTYLLVLVNCYALWSVVPTVHIVLWLSVATVVSIYRYSL--FAIRTRN 72 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA-SIARITLASIVLYYTYFIIYHGMKG 333 R + I + ++ ++ +V SIA + + I + + Sbjct: 73 STRLSPERWLIHNDVTSALSGMYWGYGLLYLVPPDSIAHMLIFVIAVTGLVSGASSSLSL 132 Query: 334 YERAVLLIPAWILIFIWFIGLWMAI-TKRLDNDIIQPALVGGLVLIVILIGFTV--IQHV 390 R+ LL L+ + + M+ L + + + + I Sbjct: 133 SPRSFLLYMISCLMPMSILLYGMSDDYGWLLFGLCYFYIYFMWQTCLTIGENARLGIVQT 192 Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 ++ + + + G L +GS + DWD P A+I G + Sbjct: 193 VSLRQQKEELIASGRLLDLHFMGSPLGLIDWDEDLKIKRWNPAAASIFGYPESEILNQKP 252 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 ++L RD F+ + + L R D P+ + +G +L Sbjct: 253 DFL-LTDNAGRDYFK-----ILRQGKQALANTVNSRKRDGGAVSCEWASTPLEDGSGTLL 306 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 Y DI+++ + + I AF D +T +PNR+ F +RL + N V+ Sbjct: 307 GYTSFVTDISKRLEHEQQITHQAFYDAVTDLPNRRYFYERLRQEMSRVQRGPN-HSAVLF 365 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----N 625 ID+D +K IND LG A+GD++L R+ L+ ++LARL G+ F ++L Sbjct: 366 IDLDHFKNINDSLGHALGDELLKQFAMRLQNRLRQHEVLARLGGDEFVLLLEELDPDLDK 425 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + A A++ I P L T+T SIG + + SE+LK A+LA+Y +K Sbjct: 426 SQAIAGQVAKALQTLIQEPFVLENNPYTLTCSIGITLFDKTDFNESEILKQADLALYRSK 485 Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 HRG N F +++ ++ A+ + E LV+ P + + E+ G E L++ Sbjct: 486 HRGRNCYSFFEQEMSEQALRHLILLNNVREAIGSEEFSLVFQPQVDIHTAELKGAETLLR 545 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIAS 802 W++ + G +S +EF+ I E +I + ++L+ + W+ P+ + INI+ Sbjct: 546 WNNSELGRVSPAEFIPILESSTLIVEVGHWVLDHSFEQLKEWQLAALWHEPMRLAINISP 605 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + LLD + E + AL++K SPS I+ +E+V++ + E+ ++L + +GIS ++DD Sbjct: 606 RQLLDPDFIEQVTALLNKHELSPSLIEFEITENVLVQDVEKVGVILDKFASMGISFSIDD 665 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +P D +K + S + T I+RSI+ + + T +A+ + Sbjct: 666 FGTGYSSLSYLKQLPIDVLKIDKSFIDHCTSEGNDQVIVRSILSICTELGLTSVAEGVET 725 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E K+L MGCD +Q + P+ + + +L Sbjct: 726 EEQQKKLQAMGCDLLQGYLYSRPVRADELSIMLSN 760 >gi|330826915|ref|YP_004390218.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|329312287|gb|AEB86702.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicycliphilus denitrificans K601] Length = 921 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 137/559 (24%), Positives = 246/559 (44%), Gaps = 10/559 (1%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 R +L + + + D P I G + + G N L DR Sbjct: 356 SARRAALVYQHTSEAMVVTDAQGVVQDINPAFTAITGYEAADILGRRMNVLSS-GRQDRA 414 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + S G + R R + + + I N +G + +IG+ D+TE Sbjct: 415 FYEALWTSLRE--TGSWSGDMRNRRKNGEEFVERLTISTSYNEDGSVHSHIGLFADVTEA 472 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 ++ I A D+LT +PNRQ F L +D + +L ++ +D+D +K++ND Sbjct: 473 RRREASIWRQAHYDHLTQLPNRQMFQQDLQRSMDSA-RASDLPLALVFLDLDYFKEVNDT 531 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G +GD++L + RR+ ++ D +ARL G+ F +IL + ++A Sbjct: 532 FGHDMGDELLRQVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKVLHAVA 591 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700 P L + V+ S G + +LK+A+LAMY AK +G N F + Sbjct: 592 QPYELSGSTVHVSVSAGVTFYPRDGDDGVTLLKHADLAMYAAKEQGRNQFCEFAPTMEQE 651 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +R ++ DL ++ E L Y PI+ + V EAL++W+ P G +S ++F+ + Sbjct: 652 AQNRRLLLRDLQQGLDEGEFALHYQPIVEMRSGRTVKAEALLRWNQPVRGMVSPADFIAL 711 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALIS 819 AEE +I + +++ A + WR++ P + +N++ L + + A + Sbjct: 712 AEESGLIVPLGDWVMREAACQLAQWREEIA-PAFRLSVNVSPVQLNSSGHCVQAWVAHLQ 770 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 S + +E V++ + + L L+ GI L LDDFGT S LSYL D Sbjct: 771 DLSLPGSALVAEITERVLLEADKDTDARLQTLQGAGIQLALDDFGTGYSSLSYLKRFDID 830 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ ++ + + ++II MA + ++A+ + L R GCDY Q Sbjct: 831 YIKIDRSFVSLLSQGNEDATLCQAIIAMAHQLGICVVAEGVETREQHDILQRAGCDYGQG 890 Query: 938 SHVASPLGFNSILKLLKER 956 P+ + + L+ + Sbjct: 891 YWYGRPMPAQELTERLRAQ 909 Score = 52.3 bits (124), Expect = 5e-04, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 14/180 (7%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGS 414 MA+ + + + G + V+ I +L + + + + + Sbjct: 196 MALGRYGTRTRLSTSDELGELARVLDHSAAHIAQLLQDVAQERSALAQMQAMFNGLAENT 255 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 ++ D + +A ILG + + + R Sbjct: 256 VAGIYMLDESGRIIYANEQLAQILGYGRAQLSDRFP--MERLFP---PPARAAAHQHSA- 309 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++E AD + I M+ G IG+ DITE+K++ A Sbjct: 310 -----RHERSALRADGSKIEIEIFGSAMTF-QGRPA-VIGLVMDITERKRAEMSARRAAL 362 >gi|238794774|ref|ZP_04638377.1| Sensory box-containing diguanylate cyclase [Yersinia intermedia ATCC 29909] gi|238725928|gb|EEQ17479.1| Sensory box-containing diguanylate cyclase [Yersinia intermedia ATCC 29909] Length = 855 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 137/585 (23%), Positives = 271/585 (46%), Gaps = 15/585 (2%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 L L L+ + + + ER + D +W+ D + Sbjct: 278 LGLAGWLVLRRAMSEARIADENKSALIASEERFRHVAEAATDWLWETDADLRITYLSQRF 337 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 TI GL+ G + ++ + + + + R LQ + +A Sbjct: 338 LTITGLSVEHWLGHNLD--SLLNCDIIPLRPWLQHTHLTESRNELQCTY--LSAKGDKRI 393 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 I +P+ N + + + G A+DIT + ++ E I + D LTG+PNR + L Sbjct: 394 CRIYAKPII-KNNETIGFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENK 452 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L A + ++ +D+DK+K +ND G GD VL ++ R+ L+ D++AR G Sbjct: 453 LRHLAAAQH-PLVIINVDLDKFKPVNDTFGHVTGDLVLHQVSERLRSCLRDNDLVARQGG 511 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F +I+ ++ +I + I P + +++I + ASIG A + + E+L Sbjct: 512 DEFILIITGLSSRKEIEQLCARVIARIESPYVINDQDIYIGASIGIALAPQDSMQAEELL 571 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732 + A++AMY AK+ G N + ++ L AV+++E L Y P R+ Sbjct: 572 RFADIAMYEAKNSGRNRWSFYSSEMNERLMQRSELERFLRQAVKHNEFNLYYQPRYRIEG 631 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 ++ G EAL++W+HP G + +F+ +AEE +I AI+ + + + +D +W Sbjct: 632 TQLTGAEALVRWNHPILGLLMPDQFIALAEETGLITAISDWTMLQACQDASTWPSS---- 687 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +NI++ + + L E ++ ++ T R++L +E +++ + + + + L+ Sbjct: 688 -LIVSVNISAVEFRNQRLIERVRQVLRLTGLPSHRLELEITERIMIEDADGAYKTMTALK 746 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 +G+ L++DDFGT S L+YL PFD +K + S + + + +I+ II + + Sbjct: 747 TLGVRLSMDDFGTGYSSLNYLRRFPFDGLKIDKSFIDELAESHEGQSIVEGIINLGHALS 806 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 T+ A+ + +++L + CD +Q + P+ N + L++ Sbjct: 807 MTVTAEGVETTEQLRQLQTLKCDEVQGYFLGKPMKLNDLSVLIRN 851 >gi|117925739|ref|YP_866356.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117609495|gb|ABK44950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 951 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 146/568 (25%), Positives = 266/568 (46%), Gaps = 14/568 (2%) Query: 398 QGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWL 453 ++ LA V + + + + + P I G + G + Sbjct: 374 HEARETEQQLLLAKQVVQTASEAIVITNHKNQIMDVNPAYERITGFMRHEVLGRNPKITQ 433 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 H +F + + G E R + + + I + N G I ++ Sbjct: 434 SGRHD---ASFYATMWKHLVGE-GHWSGEIWDRRRNGEIFPKWLAISAIRNRQGVISHFV 489 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 G+ NDI+ QK + + + F D LT +PNR F DRL + ++ + L +++++D+ Sbjct: 490 GVFNDISRQKSTEQQLERLVFYDPLTQLPNRVLFRDRLIHEVGVAERSNKL-MSLLLVDL 548 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K IND LG VGD++L+ +++R+ ++ D +ARL G+ F IIL + A Sbjct: 549 DRFKIINDTLGHGVGDELLLQVSKRLIASVRKSDTVARLGGDEFAIILPGMERAEDAAHV 608 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + + +P ++ E E+ V ASIG A + NA+ AM+ AK G + Sbjct: 609 AETIINQLQVPFSIEENELFVGASIGIAVHGQDGDDYDSLTMNADAAMFKAKESGKGTYK 668 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + + +L AV+N EL L Y P + +IVG+EAL++W HP G Sbjct: 669 FFTPDMNIQNAKRLVMEAELRRAVDNQELMLHYQPKVDAESRQIVGMEALVRWVHPTRGV 728 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I EF+ +AEE +I + +L R + W D P + + +N++ + + L Sbjct: 729 IPPGEFIPLAEETGLIVPLGELVLTRACAQVKQWWDMGL-PQVQVAVNLSPRQFQEPNLI 787 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + ++ KT + + ++L +ES+ M + + + + +L+ +G+ +++DDFGT S LS Sbjct: 788 EKVSEILRKTGFPATGLELEITESIAMHDVDNTIETVKKLKDLGVRISIDDFGTGYSSLS 847 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P +K + S + + +I+ SII MAK + ++A+ + ++ L Sbjct: 848 YLKKFPLHALKIDQSFVRDLGGDDDGASIISSIISMAKAMALGVVAEGVETAQQMEFLRG 907 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957 C +Q ++ PL + L LL+ + Sbjct: 908 QECQQVQGFFLSKPLPPSDFLALLERQQ 935 Score = 84.6 bits (208), Expect = 7e-14, Method: Composition-based stats. Identities = 37/359 (10%), Positives = 102/359 (28%), Gaps = 24/359 (6%) Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 + + + ++ + + +F+ + + + W+ G + Sbjct: 35 EQLWAHAGLHALVEALVGFMGLFVAVV-IKLLHRNQQVNGRLLWLCAGLVLSIPLMALHT 93 Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWH--AKVGYITFSGIACIAILFCMS 300 ++IW L + L +WH ++ Y + Sbjct: 94 APGSDENVVIWLYALATLLGGGV---SAGMLLGEQWHSQPRLPYAALLIALGLMGWAMFF 150 Query: 301 ---------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF 351 + A + A + + +I + RA LL+ + L+ Sbjct: 151 PEHIPDMGQWSQLSDLAVGMNLIGALGFVLAWFALISGHVVSGRRAPLLLGNFSLLMASA 210 Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 +++ L + +++ F + + + R V Sbjct: 211 AIIFLLADTWDSRWWFYHFLRLAALALLLSYFFALYLKDFRV------LRENDARFQALV 264 Query: 412 LGSGDIVWDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 V+ + R V + + + GL+ + + D + + L+ Sbjct: 265 ESIHAGVYRTQVTLERRLVYASAQMHQVAGLSMQQCQEGGVSLKSLVVPEDWPHVQEALE 324 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + + ++R+ W+ R R + + G + G +I E +++ + Sbjct: 325 WSIKT-HVPYEMQYRINHPQRGEMWVSDRGRIIKDHQGQPCWFDGALLNIHEARETEQQ 382 >gi|119487258|ref|ZP_01621009.1| hypothetical protein L8106_21077 [Lyngbya sp. PCC 8106] gi|119455813|gb|EAW36948.1| hypothetical protein L8106_21077 [Lyngbya sp. PCC 8106] Length = 1177 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 146/561 (26%), Positives = 270/561 (48%), Gaps = 8/561 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + + ++ ++ + P +A ILG +S + + + ++ Sbjct: 614 ERKQAEAKYRNIFKNAVEGIFQMNLEGLYTSANPALANILGYSSPQVLLNKKTKVKNLY- 672 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIGIAN 517 R + + + +E +V D + W++ R + +S G ++ Y G Sbjct: 673 -FRSEQYSKFIQTLNKQGKVSNFESQVYRQDGRLIWILQNARAIRSSKGKQVIYYEGSII 731 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT KK+ E + +A D LT + NR F++RL + N V+ +D+D +K Sbjct: 732 DITNLKKTEEKLRYSASHDALTNLWNRSFFIERLKKSITRLHKQSNYLFAVLFLDLDGFK 791 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG +GD +L+ +++R+ L +IL RL G+ F I+L + ++ + + A + Sbjct: 792 IINDCLGHGMGDLLLIEISKRLKISLHSGNILCRLGGDEFTILLENISDINEAQEIASRV 851 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696 K + P L ++ + SIG T E+L++A+ AMY AK +G F Sbjct: 852 LKILNKPFTLKGHQVFIGTSIGIVKGTREYHLPPEILRDADTAMYRAKKKGKGCAVLFDA 911 Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + R+ I+ DL A+E E L Y PII L +I G EAL++W+HP+ G IS Sbjct: 912 GMRTDALRRLQIQTDLRFALEQEEFQLYYQPIIELSTGKIAGFEALLRWEHPQQGFISPG 971 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGM 814 EF+ +AEE +I + ++L R + +W+++ ++ + + +N++S+ +L + + Sbjct: 972 EFIPVAEETGIIVPLGEWVLREACRQLHTWKEKFSLSKLLMMSVNLSSQQFT-VDLSQRV 1030 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ +T +KL +E+ +M +P+ + L L++ I + +DDFGT L YL Sbjct: 1031 DQILQETHVLGRELKLEITETAIMADPQLAIATLNELKQREIMICIDDFGTGYCSLGYLH 1090 Query: 875 YIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + S + + I+R I+ +A+++ IA+ I E +L + C Sbjct: 1091 QFPVDILKIDRSFVNKMQVGDKREIVRVIVELAESLRMDAIAEGIETEEQYIQLQNLHCK 1150 Query: 934 YIQDSHVASPLGFNSILKLLK 954 Y Q + A PL N + L Sbjct: 1151 YGQGYYFAKPLHPNEAEQWLA 1171 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 60/168 (35%), Gaps = 3/168 (1%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 I+ G+VLI+ + + ++ + + + + + D Sbjct: 290 ILIGLGTTGIVLILRPLTDQMQTEIIERQKAEIALRHEKDFNQTLFHANPAFLIVLDPEG 349 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + LG + G ++ +++D + + + +R+ ++ E +V Sbjct: 350 KVKLMNDTMLNALGYTLEEVVGT-DYLATFVPRHNKDALPWVFELMI-HRQLPIRTEEKV 407 Query: 486 RAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCN 532 + + + R + N + ++G DITE+K++ E + Sbjct: 408 LMKNGKKIIVEWYGRAVFNPETDEYEYFLGAGLDITERKRTEEELQLL 455 >gi|239906034|ref|YP_002952773.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] gi|239795898|dbj|BAH74887.1| GGDEF domain protein [Desulfovibrio magneticus RS-1] Length = 601 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 134/542 (24%), Positives = 254/542 (46%), Gaps = 12/542 (2%) Query: 422 DIVRDRVTTTPDIATIL-GLASGSMHGPIRNW--LPYIHINDRDNFRTILDSFVGYRRGR 478 D +L L + G + + R L + + R R Sbjct: 53 DGDGRIRFANASCLELLRDLDPSAAVGSPFADSCVKLLPETVSAAVREGLAAVLDGRLPR 112 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + + W + P+ G + DI+ QK+ E IL +AF D L Sbjct: 113 YEMDLPC-GPSGSQIWRALCFTPLR---GPTSGAVATLTDISRQKQLEEHILHDAFHDTL 168 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+ NR F++RL + + + V+ +D+D++K +N G GD +L+ + R Sbjct: 169 TGLFNRALFINRLDQAIKRLRRNPDALYAVLYLDMDRFKLVNKTFGHVTGDRLLMVIANR 228 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + + L+ D LAR G+ F I++ + + + A + + +A P L ++EI VT S+ Sbjct: 229 LQKQLRELDTLARFGGDEFAILIEDISGLDEASTMAENVLRQLAQPFRLKKQEIFVTCSL 288 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVE 716 G +++ ++L++A+ AMY +K GG+H F + ++ + L A+E Sbjct: 289 GVVVGSAAYEHPDQVLRDADNAMYSSKEHGGDHYTVFDAGMRVLTQRRMEMELALRQAME 348 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 + E+ + Y PI+ L ++ GLEAL +W HP+ G I SEF+ IAEE +I + +L Sbjct: 349 SGEITVHYQPIVSLATGDVTGLEALARWQHPRQGFIPPSEFIPIAEESGLINELGALILR 408 Query: 777 RIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + R ++ + + + +NI+ + + + + ++++T SR+KL +ES Sbjct: 409 QSCRRLVELGRENPEGEKLSVSVNISGRQFKRPDFVQEVAGILAETGIDASRVKLELTES 468 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895 V+M + + + + L+ +G+ + +DDFGT S LSY+ PFD++K + S + E Sbjct: 469 VLMDDADEAVRAIKNLKALGVKVVIDDFGTGYSSLSYIQRFPFDSLKVDRSFVGNMNEAE 528 Query: 896 I--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I+R+II MA + ++A+ + L+ + C+ Q + + + +L+ Sbjct: 529 QNMEIVRAIIAMAHKLGLEVVAEGVELAEHKAALSELRCESAQGFFFSRAVPGEELGELM 588 Query: 954 KE 955 + Sbjct: 589 RR 590 >gi|260220904|emb|CBA28937.1| Uncharacterized signaling protein PA1727 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 786 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 133/574 (23%), Positives = 251/574 (43%), Gaps = 15/574 (2%) Query: 393 TGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 Q + + +A S D+++ D + + G G Sbjct: 203 LQQREQELVQSRDALRIAATAFESNDVMFVCDADWRILQVNSAFQRVTGYLPEEAIGKAP 262 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 L I ++ F +++ + G Q E R + + + I + + +GD+ Sbjct: 263 RDLMGSGIQTQE-FYEVMNESIR-SNGSWQGEVWDRRKNGETYPAWTTITAVRSESGDVT 320 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 Y+ +D + +K + I + D+LT +PNR+ + RL T + +A ++ Sbjct: 321 HYVANLSDFSARKAAENEIKTLVYFDSLTMLPNRRMLMGRLETAM-HAALSTGHLGALLF 379 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN----- 625 +D+D +K +ND LG GD +L + R+ ++ D +ARL G+ F ++L + Sbjct: 380 VDLDDFKTLNDTLGHHQGDILLQQVANRLQSCVREADTVARLGGDEFVVMLEGLSKDVAE 439 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 S + A + +++ P +L + T S+G + + + E LK A+LAMY AK Sbjct: 440 ASTQAEAVAGKVMQALNQPYDLGTLTRSSTPSVGITVFGKQQESLDEPLKRADLAMYQAK 499 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N F + + + ++ L A+E + L P I D + G EALI+ Sbjct: 500 AAGRNTSRLFDPKTQAAVTLRADLEAALRTALEEEQFVLYLQPQIS-EDVRVTGAEALIR 558 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G + EF+ +AE+ MI I ++L + + W Q + I +N+++K Sbjct: 559 WQHPTRGLVMPGEFIAVAEDCGMIVPIGNWVLNTACKQLALWATQPAFAHMTIAVNVSAK 618 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 ++ E + +S+ S +K+ +ES+++ N + + + L+ G+ +DDF Sbjct: 619 QFHQHDFVEQVLDALSRHGAQASGLKIEITESMLIANVDDVIVRMEELQHHGVGFAMDDF 678 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL +P D +K + S + AI I+ +A ++ ++IA+ + Sbjct: 679 GTGYSSLTYLKRLPLDVLKIDQSFVRDVLVDTNDAAIANMIVALANSMGLSVIAEGVETV 738 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ L R GC Q + P+ L + Sbjct: 739 EQMQYLARHGCHAYQGYLFSRPVPVERFETSLAD 772 >gi|27376066|ref|NP_767595.1| hypothetical protein bll0955 [Bradyrhizobium japonicum USDA 110] gi|27349205|dbj|BAC46220.1| bll0955 [Bradyrhizobium japonicum USDA 110] Length = 955 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 135/589 (22%), Positives = 254/589 (43%), Gaps = 29/589 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + R A+ + D + + GL+ Sbjct: 383 VATYEDITERERAIEELSEQYRRFDAALNNMSQGLCMLDSSLRVIVCNRRYIEMYGLSPD 442 Query: 444 SMHG--PIRNWLPY-----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + +R + + IH + + +V R R +D + + Sbjct: 443 VVKPGISMREIMDHSCELGIHPD--TTGAKLYADYVERLREGEHTLHR-HLSDGRIIKLN 499 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + ++ ++ D+TE+ K+ + A D+LT +PNR F +++ L+ Sbjct: 500 HKRM-------ELGGWVVTYEDVTERHKAQARVAHMARHDSLTDLPNRTLFREKMGEGLN 552 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 A V+ D+D +K +ND LG A GD +L + R+ E + D +ARL G+ Sbjct: 553 QVAIAGGA-MAVLCFDLDNFKTVNDRLGHAAGDRLLRWVAARLKENVGEHDTVARLGGDE 611 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F ++ A + + I P L + I V S+G A + + E++K Sbjct: 612 FAVLQRGPQ-PQSAEKLARRLVEIIGHPPPLESQSIHVGVSVGIAIAPDHGLDADELMKC 670 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LA+Y AK RG + F R ++ +L A+E E +LV+ P +RL E Sbjct: 671 ADLALYQAKARGRGAYQLFEPEMEEEARSRHALEHNLRGALEAREFHLVFQPQVRLESSE 730 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + G EAL++W HP G +S +EF+ IAEE +I I ++L SW P + Sbjct: 731 LTGFEALLRWKHPSRGFVSPAEFIPIAEENGLIVPIGEWVLRTACATAASW------PDV 784 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ L + + +++ P R++L +E+ ++ + E + +L +LR + Sbjct: 785 TVAVNLSPVQFRARGLAAMVTSALAEAGLPPQRLELEVTETALLDDSEATIEILHQLRAL 844 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETT 912 G+ ++LDDFG S LSYL PFD +K + S + G + + +AI+R+I + + Sbjct: 845 GVRVSLDDFGVGYSSLSYLRKFPFDRIKIDRSFVGTLGESPESVAIVRTIASLGSVLGVE 904 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 A+ + E + + GC +Q + P + + ++ + + Sbjct: 905 TTAEGVETEEQLDFVRECGCTAVQGYYFGRPCPAAEVARTIETLNAVRR 953 Score = 46.5 bits (109), Expect = 0.020, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 20/181 (11%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 T + ++P GG + I + + ER A+ Sbjct: 109 LATGLVMALELKPLPGGGWMTICDDVS--------RLARLEAELRVQTERSQHALANMSH 160 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-----FRTILDSF 471 + +D V + L + + + H R N D+ Sbjct: 161 GLIMYDADSRVVVCNERFLKLYNLDPEVVKPGVTHSAAIEHWLSRGNTPGMSADEFHDTR 220 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + R R V D + + +G ++ + D+TE+ K E + Sbjct: 221 LEDVRSRKAKTLLVMRYDGRMV----QAVSRFLPDG---GWVTVHEDVTERLKYEETLRQ 273 Query: 532 N 532 Sbjct: 274 Q 274 >gi|297539309|ref|YP_003675078.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297258656|gb|ADI30501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 879 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 143/560 (25%), Positives = 256/560 (45%), Gaps = 15/560 (2%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + ++A ++ D + + I G + G L D D Sbjct: 324 LQIAAVAFESQNSVMI-TDASLNILRVNKAFTDIFGYTAEEAVGKTAKLLRS-GSQDADF 381 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + I G Q E R + Q ++ I + + +G + Y+G DITE+K Sbjct: 382 YEHIWHEV--NTTGSWQGEILNRHKNGQLLSNLLSISVVKSKDGVVTHYVGSHVDITERK 439 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + + IL AF D LT +PNRQ F DRL + SA + +++ID+D +K +ND L Sbjct: 440 AAADKILHIAFHDLLTQLPNRQLFNDRLKQAIASSARTSQI-GALLLIDLDNFKTLNDTL 498 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMR 638 G +GD +L + R+ ++ D +ARL G+ F I+L ++ + + Sbjct: 499 GHDIGDLLLQQVAERLNLNVREGDTVARLGGDEFVILLEDLSDNALDAATSAEVLGDKIL 558 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++ P L T+SIG + ++ +++LK A+++MY AK G N + F Sbjct: 559 VALNQPYVLGSNHYHTTSSIGVTMFEGHQLMIADLLKQADISMYQAKKAGRNTLRFFDPK 618 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ +L A+E+ + L Y + G E LI+W HP+ G IS + Sbjct: 619 MQEAFNIRATLEIELRRALESKQFQLYYQVQVD-QLARPFGAEVLIRWIHPERGMISPLD 677 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I ++L+ + W+ + + + + +N+++K + +QA Sbjct: 678 FIPLAEETGLILPIGEWVLDTACAQLEVWQKEKSTKNLTLSVNVSAKQFSQADFVRQVQA 737 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 +S+ P +KL +ES+++ + + + + L IG+ +LDDFGT S L YL + Sbjct: 738 KLSRYNVKPQHLKLELTESILLEHVDNIVISMVALESIGVQFSLDDFGTGYSSLQYLKML 797 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P + +K + S + +I+ +II MAKN+ +IA+ + E + L GC + Sbjct: 798 PLNQLKIDQSFVRDIVEDSNDRSIVGTIIAMAKNLGFEVIAEGVETEAQKELLLSKGCQH 857 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q P+ LLK Sbjct: 858 FQGYLFGKPMPIEQFGSLLK 877 Score = 68.1 bits (165), Expect = 8e-09, Method: Composition-based stats. Identities = 47/414 (11%), Positives = 129/414 (31%), Gaps = 43/414 (10%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 + NR +L+ +L D L + + S+ F Sbjct: 3 LRNRYILLVTISYFVLALLWIFLSDQLLSIFTDINSIVWLSTAKGVFFVFASALGFFFAL 62 Query: 271 MYLHWNRWHAKVG------------YITFSGIACIAILFCMSFYYPMVTASIARITLASI 318 + + + + + AI+ + + + + + Sbjct: 63 RAMPLSNDASNLRLQDVVFSGVLFERRSAWLTYVFAIIVTLLMLFVRMHMGLNADHRPLM 122 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +L+ ++ + G +L + + + + + D + + Sbjct: 123 ILFMLPILLSALLGGLGPGLLATFLASIGTDYLVIQPLHSFEISDKYDLIQWSTLIFSGL 182 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ I ++ + A + + ++AV G+ D V+ D + + A Sbjct: 183 ILSIFSEMLMRMRARAENNLKL------LNVAVSGTADAVFVKDKIGRYLIVNQAAANFA 236 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G+ + G +L + D V R +E V + + + Sbjct: 237 GMPMAEILGKDDYFLF---PESSAKAVMLQDQKVMDSRRTQSHEESVVSFGGKSMVFDVT 293 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 PM ++ G+++ GI+ DITE+K++ + A +F + + ++ + Sbjct: 294 KGPMFDAAGNVIGLFGISRDITERKQAEINLQIAA-----------VAFESQNSVMITDA 342 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 + + ++ ++ K D+ G ++ + + + + D + Sbjct: 343 SLN--------ILRVN--KAFTDIFGYTA-EEAVGKTAKLLRSGSQDADFYEHI 385 >gi|222098820|ref|YP_002532878.1| hypothetical protein BCQ_5189 [Bacillus cereus Q1] gi|221242879|gb|ACM15589.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 892 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 182/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%) Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 K L+ +++ + I L + + ++ A+ + ++ YI + Sbjct: 54 AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287 GF K + S L + I + I F + L + W +I Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173 Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 S + I L+ Y + I T+ + Y F + G+K LI + Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384 + I + + K + ++ V + +LIG Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293 Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417 + +L + + +R D Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEDKVEEGASALSKSEQRYKSLFEDHPDA 353 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + ++ + + L +I D D + L R Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQLTKEGRPQ 411 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 L E R + + ++++ I + P N +++ GIA DIT + + + AF D Sbjct: 412 TL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ F L IL+ + N VM +D+D++KKIND LG VGD +L+ + + Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAK 527 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ D++AR G+ F I+L + A A + + P + + E+++T S Sbjct: 528 RLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG A + + ++KNA++AMY AK G N F + ++ +L A+ Sbjct: 588 IGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + +E +L Y P + ++++G EALI+W HPK G +S ++F+ +AEE I + ++L Sbjct: 648 QQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W +Q + + +N++ +L + ++ +T P + + +ES Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 + + + L +L+ +GI +++DDFGT S L+YL P +T+K + G + Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ SII ++K + +IA+ + E K L CD+IQ ++ P+ + +LL Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886 Query: 954 KER 956 ++ Sbjct: 887 HKK 889 >gi|323490114|ref|ZP_08095334.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Planococcus donghaensis MPA1U2] gi|323396162|gb|EGA88988.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Planococcus donghaensis MPA1U2] Length = 605 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 151/575 (26%), Positives = 262/575 (45%), Gaps = 20/575 (3%) Query: 391 LATGYFSQGIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 L Q + E + + D V D + TI G G Sbjct: 33 LRNSQKLQKKSNSTELELKFESVFESTSDAVIVADQHGTILQWNLGAETIFGFKKKEAIG 92 Query: 448 PIRNWLPYIHINDR-DNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMS 503 L I D R L F + + E R D Q + + + Sbjct: 93 VN---LEIIIPESLIDGHRKGLQQFSETGVPSVIGRRVELVGRRKDGQEIPIEMSVGTWK 149 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +G L + I DITE+K++ I ++D LTG+PNR+ D+L + + Sbjct: 150 TEDG--LFFSNIIRDITERKETEAKINSLVYRDPLTGLPNRRMLSDQLALKIKQ-QSGKK 206 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +++ ID+D +K IND G GD +L+ + +R + D ++RL + F ++L + Sbjct: 207 QSMSLLYIDLDHFKLINDTYGHYAGDQMLIEVAKRFQSIAHAEDTISRLGADEFILLLPN 266 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +S K A + + P + ++ VT SIG + + + I ++KNA++A+ Sbjct: 267 -TDSFKATAHAQKILELFKEPFRFQQEDLFVTPSIGISIFPNDGIDLDTLVKNADIALSQ 325 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N+ + F S+ ++ + D+ +E E ++ Y P I L +IVGLEAL Sbjct: 326 AKSQGKNNFQFFTESTNQAALRKSKLAIDIRKGLEKGEFFIHYQPQIDLKTNKIVGLEAL 385 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ GNIS +EF+ +AE+ I I F+L + +W+D P + +NI+ Sbjct: 386 VRWVHPRLGNISPAEFIPVAEDTGSIIQIGEFVLRQACLQNKAWQDAGL-PHFRVAVNIS 444 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 S L E + +S++ P ++L +ES ++ + + + L+ +GI L++D Sbjct: 445 SHQFSRCNLMETIHTALSESGLHPKYLELELTES-IIQSSTSAIETMQTLKAMGIHLSID 503 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L YL P DT+K + + K A++ +II MA+N++ +IA+ + Sbjct: 504 DFGTGFSSLRYLKLFPVDTLKIDQYFIRNIITDPKDAALVDTIIKMAENLQLNVIAEGVE 563 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 ++ L + CD Q + PL I +L + Sbjct: 564 TLEQLQFLQQKNCDQAQGYYFNRPLPPEEIERLYQ 598 >gi|319784490|ref|YP_004143966.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170378|gb|ADV13916.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 713 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 133/591 (22%), Positives = 253/591 (42%), Gaps = 30/591 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + + + + R A+ + +D + + + Sbjct: 140 VSIYEDITEQRRAQEDLKEQHRRFDAALANMSQGLLMYDADGKMIVRNRRFLELYKVTPA 199 Query: 444 S--MHGPIRNWLPYIHIN------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + R+ L + D D+ ++ + ++ +R D + Sbjct: 200 DFPLGTTHRDALERLLELGIYTKIDVDSEVAKTEACLA--AAKMHSAYRHLT-DG--RTV 254 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 ++ RPM ++ +D+TE++++ E + A D LTG+PNR F +RL L Sbjct: 255 LVTRRPMDGG-----GWVVTFDDVTERRRTEERMTHLAHHDTLTGLPNRSMFRERLDLAL 309 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSG 614 + +A + +D+D++K +ND G GD +L ++ R+ L D++AR G Sbjct: 310 EDTAATP---LAIFSLDLDRFKAVNDTWGHPAGDWLLKTVAERLQRCLHNENDVVARFGG 366 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F II + A + ++I P RE+ + S+G A + + +L Sbjct: 367 DEFVIIQFNFKGIANAEKLAKRIVETIGKPFRDKSREMHIGISLGIAVFPDDGGDADTLL 426 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMD 732 +NA+ A+Y AK G N F + ++ DL A+ E L + PI+ + Sbjct: 427 RNADTALYRAKSEGRNLYRFFEPGMDAMVQARRALEVDLGTALSRQEFDLDFQPIMNIAS 486 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 EIVG EAL++W P+ G ++ F+ +AEE +I + + L + W Sbjct: 487 GEIVGAEALMRWHSPERGMVAPDSFIPVAEETGLIVPLGEWALRKACTAAARWPA----- 541 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +N+++ L + + ++ + R++L +E+V+M E L +LR Sbjct: 542 GLRVAVNVSAVQLKSGSFARSVISALAFSGVPAGRLELEITETVLMDESEVVLRTLRQLR 601 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911 ++GI + LDDFGT S L YL P D +K + S + AI+R++I + + Sbjct: 602 ELGIRIALDDFGTGYSSLGYLRRFPVDKIKIDRSFIHDLGNRDTAAIVRTVIGLGAELGI 661 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 T+ A+ + E+ + L GC Q + +P I +LL+ R P + Sbjct: 662 TVTAEGVETEVQLDILRSNGCTEAQGFLIGAPSQAAEIQRLLRSRAPHSQT 712 Score = 46.9 bits (110), Expect = 0.019, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 11/145 (7%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + +R S AV + +D + + I L + + IR Sbjct: 22 RSRHMEDELREQNQRFSAAVENMSHGLCMFDADERMIICNGNYLNIFCLDARVIRPGIRF 81 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQY----EFRVRAADNQFHWMIIRIRPMSNSNG 507 H D D R+ + + +D + + R P++ Sbjct: 82 LDILRHSVDIGVASQTADELYAIRKPYIDQAKPSTYEETLSDGRIVSISHR--PLA---- 135 Query: 508 DILRYIGIANDITEQKKSLEGILCN 532 + ++ I DITEQ+++ E + Sbjct: 136 -LGGWVSIYEDITEQRRAQEDLKEQ 159 >gi|113474516|ref|YP_720577.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Trichodesmium erythraeum IMS101] gi|110165564|gb|ABG50104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Trichodesmium erythraeum IMS101] Length = 866 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 162/633 (25%), Positives = 276/633 (43%), Gaps = 50/633 (7%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 Q + G + + I A + ER V S + + + + Sbjct: 234 QQNQMVGSIGVNRDITQQKRAQEFALQQAEAALKESEERYHRLVKNSPEAIAV-NYMEKI 292 Query: 428 VTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 V A + G + G + +I + + L E ++ Sbjct: 293 VYINAAGAKLFGANCPDEIIGQL--LRKFIPSELIETEKQRLQQVQEQGMETHLQEEKLI 350 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + + I P +G I I DIT +KK+ ++ +A D LTG+PNR Sbjct: 351 KLNGEIIDVEILGIP-YTYDGKAATQI-ILKDITHRKKTQAKLVYDALHDTLTGLPNRAL 408 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F +RL L S N + V+ +D+D++K IND LG +GD +L+++++R+ +K Sbjct: 409 FFERLKLALCRSRKQPNYQFNVLFLDLDRFKVINDSLGHTIGDRLLIAISKRLQNCIKAS 468 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS---- 662 D LARL G+ F I+L S +N A + + + PI L EI TASIG + Sbjct: 469 DTLARLGGDEFTILLESPSNLQDATKVAGRIHQELVRPIYLEGNEIFTTASIGIVTNRRN 528 Query: 663 WTSSKIT-----------SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKE 709 + ++L++A++AMY AK G E F + + ++ Sbjct: 529 FIEDIDENHPLICPIYNKPEDLLRDADIAMYRAKTLGKARHEVFDLTMHREAISLLQLEN 588 Query: 710 DLCLAVE-------NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 DL A+E NS+ L Y PII L I G E+L++W HP G I +F+ +AE Sbjct: 589 DLRRAIEIIKQNPVNSQFILNYQPIICLNTGIITGFESLLRWAHPTRGLIYPGQFIPLAE 648 Query: 763 ELCMIKAINLFMLERIARDIISWRD----------------QANMPPIFILINIASKDLL 806 E +I + +++L + + +W+ Q + +N++SK L Sbjct: 649 ETGLIVPLGMWILRSVCHQLTTWQQECSTKYDSGCCMYSSCQFPTDNFTVSVNLSSKHLS 708 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 L E + ++ +T PS ++L +E+++M N + +L +L+ I L +DDFGT Sbjct: 709 QPNLLEEINTILEETNCQPSYLELEITETLIMENVSLATQILNKLKNKNIKLLIDDFGTG 768 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI----AILRSIIPMAKNIETTIIAKDIYGEI 922 S LSYL P D++K + S ++ I+ +II +A N+ IIA+ I Sbjct: 769 YSSLSYLHQFPIDSIKIDRSFVSRLDSDTSGQTCKIVGAIIGLANNLGLEIIAEGIETRT 828 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +++L ++ C+ Q + PL KLL+ Sbjct: 829 QMQKLKKLQCNKGQGYLFSKPLEGEDATKLLRN 861 Score = 77.7 bits (190), Expect = 1e-11, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 5/152 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 G T I VL+ I ++++L D V D + V + G + Sbjct: 115 GETAILSVLSPSLEDTLIQRSLQKKALIFEYLYDGVILTDTQGNIVDWNSAATRMFGYSK 174 Query: 443 GSMHGPIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G +H + + + E D + P Sbjct: 175 TEVLGKSPA---ILHKPEIASVLTKEIIERIKV-NDKWIGEINFIRKDGSEGICETTVVP 230 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + ++ IG+ DIT+QK++ E L A Sbjct: 231 ILDQQNQMVGSIGVNRDITQQKRAQEFALQQA 262 >gi|330988031|gb|EGH86134.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 638 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 153/623 (24%), Positives = 287/623 (46%), Gaps = 17/623 (2%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394 + + + + + L I + Q VL+ ++ F ++ ++ Sbjct: 14 LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSAVMIFIARDRLRSLIGGD 73 Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 Q +D +R LA + + V D V I G + + G Sbjct: 74 ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H + ++ + S + G+ E R + + IR + +G Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + +DIT K+S + + D LT +PNR DR++ L + +++ Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSARASKRG-CALLL 248 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND LG VGDDVL ++ R+ + LAR G+ F +++ + + ++ Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + ++ P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368 Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + RV + +L AVE +L + Y P+ L+ I G+EAL++W HP+ Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAVELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ IAE+ +I I+ ++L+ + +W + +P F+ +N++S+ Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + + +T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT S Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L L +P +K + + G + IAI+R++I +A ++ ++A+ I Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607 Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949 L GC Q A P+ +I Sbjct: 608 LLGNGCQLGQGYWFARPMVAQAI 630 >gi|297585135|ref|YP_003700915.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens MLS10] gi|297143592|gb|ADI00350.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus selenitireducens MLS10] Length = 815 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 134/561 (23%), Positives = 268/561 (47%), Gaps = 13/561 (2%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + +R + D V + + + P + G + + +I Sbjct: 261 LIESEQRYKSIFQYNVDAVTTLNTAGELYYSNPAAEQLFGCDRSELIKEP--FSSFIIAE 318 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 +R+ F + + Q+E + + ++ + + P N ++ IA DI Sbjct: 319 EREPFHEKMTMTLEG--TPHQHETAITNTRGEKRYVHLTLIPTF-INKEVTGVHCIAKDI 375 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE K+S E I A+ D LT +PN+ F L T++ S+ ++ ID+D++K I Sbjct: 376 TESKQSEEKISFLAYHDTLTTLPNQYKFQQDLNTLIARSSIKPK-PFSIFTIDLDRFKFI 434 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +G+++L + RI ELL L R G+ F I+ + + + Sbjct: 435 NDYLGYDLGNELLTKVGTRISELLSEDAKLYRYGGDEF-TIIHLDATPEESLQLGNKIAS 493 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +I+M ++ + +T SIG + + ++K ++ AMY AK G N+V+ F Sbjct: 494 AISMAFDISGFDAFITVSIGISHHPDHGKDLNTLIKKSDNAMYFAKKMGRNNVQMFNEEI 553 Query: 700 F--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + + ++ L A+E E L Y P I G+EALI+WD+ + G IS ++F Sbjct: 554 NTLSTKNLKLESLLYKALERDEFLLHYQPQYDAKTNRISGVEALIRWDNEELGMISPADF 613 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I I +++ +W+D+ PP+ + +N++ + +L + + + Sbjct: 614 IPLAEETGLIVPIGEWVMRTACHQNKAWQDEGL-PPMVMSVNLSIRQFYQPDLPQVIGKI 672 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + ++ +P ++L +ES+ M + + + +L +L+++G+ + +DDFGT S L++L P Sbjct: 673 LEESGMAPELLELEITESMAM-HADSAISILKQLKQLGVRIAIDDFGTGFSSLNHLKKFP 731 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + + I+++II +A N+ ++A+ + ++ + L CD Sbjct: 732 LDHLKIDRSFVDDICLGSEEQDIVKTIIMLAHNLNLRVVAEGVENDLQQQFLKDHRCDVF 791 Query: 936 QDSHVASPLGFNSILKLLKER 956 Q H + P+ ++I +LL+++ Sbjct: 792 QGFHFSKPVIRDAIPELLRKQ 812 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 10/145 (6%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 IL + + + + E L + D+++ D + + P + L Sbjct: 119 FILSVVRDLSGRSSNQMLHERTSKEFESLYL---HNPDLIFSTDPLGNFTNMNPACSATL 175 Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 + + P L H + + + R + + I Sbjct: 176 EYSKQELMKLPYDEILDVAH---INKTVDQFSKALKGQTVTFTATVR--TKSGRPVDLNI 230 Query: 498 RIRPMSNSNGDILRYIGIANDITEQ 522 P+ + + I IA DIT Q Sbjct: 231 TSLPILVED-QVEGVISIARDITAQ 254 >gi|187927101|ref|YP_001893446.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] gi|241665431|ref|YP_002983790.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] gi|187728855|gb|ACD30019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] gi|240867458|gb|ACS65118.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] Length = 980 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 143/571 (25%), Positives = 261/571 (45%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + S D + +D R+ P G + G + LP Sbjct: 411 TAELVTRERESRTLIENSPDTISRYDRESRRIYANPAFCASAGCSLTEALGKRPSELPG- 469 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D + S V Q+E R D Q +R+ P ++ G++L + + Sbjct: 470 --GDNARVYEKIISDVISSGTSAQFELRWAGKDGQEQCSHVRLTPETDLAGNVLSVLAVG 527 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D++++ I A D LTG+PNRQ F +RL R +M+ID+D++ Sbjct: 528 RDLSDRMAFEATIWKQANFDALTGLPNRQMFHERLAQEASQPGRIGR-RMALMLIDLDRF 586 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND LG GD +L+ +RIG ++ D +ARL G+ F +IL + +++ + A Sbjct: 587 KEVNDSLGHDRGDTLLIEAGKRIGACVRQSDTVARLGGDEFTVILPNLDDAESVERIAST 646 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + +A P L E V+AS+G + + KNA+ AMY AK+ G N F+ Sbjct: 647 IIDKLAEPFKLGTDEAFVSASVGVTFYPDDAHDLDVLFKNADQAMYAAKNAGRNRFSYFK 706 Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R+ + DL +A+ + + + Y PI+ L E+ EALI+W HP+ G IS Sbjct: 707 PDMQVEAEKRLRLTSDLRVALPSGQFQVYYQPIVELATGEVCKAEALIRWLHPERGTISP 766 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEG 813 +F+ +AE+ +I +I ++ ++ + WRDQ + P I +N++ + + LC Sbjct: 767 HDFISVAEDTGLIVSIGDWVFKQAVQQARQWRDQFH-PSFQISVNMSPVQMRQDGQLCAR 825 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +++ + + +E +++ R+ L LR GI +++DDFGT S LSYL Sbjct: 826 WSDFLAREGLPVQSVMVEITEGLLLQAESRTDETLLALRSAGIGISIDDFGTGYSSLSYL 885 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 D +K + S + E A+ +++ +A + +IA+ + L + Sbjct: 886 QRFDIDYLKIDRSFVHNLSFDEDNQALCEAMVVLAHKLGLKVIAEGVETAEQRDFLKAVD 945 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 CD+ Q ++P+ + + + +P+ + Sbjct: 946 CDFAQGFLYSTPVLPHEFERRV---WPMSER 973 >gi|320107294|ref|YP_004182884.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Terriglobus saanensis SP1PR4] gi|319925815|gb|ADV82890.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Terriglobus saanensis SP1PR4] Length = 702 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 140/578 (24%), Positives = 256/578 (44%), Gaps = 8/578 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + H + + R + + GD V D++ + G Sbjct: 120 SLSRALHRAIESSAVDLLSVEKNRALVTLDSIGDAVLSSDLLGRVTYLNGAAEKMTGWTR 179 Query: 443 GSMHGPIRN-WLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIR 500 G + + R+ L + R L + D + Sbjct: 180 LEALGQPLSEVFRILDSVTREIAPDPLQRAIDLNRAVGLPSGCVLLHRDGTERVIDDTAA 239 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ +S G ++ + + +D++E + + + +A D LT +PNR DR++ + +S Sbjct: 240 PIHDSVGTVIGAVIVFHDMSEARATAILMASSANHDPLTKLPNRILLSDRISQAISISHR 299 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 VM +D+D +K +ND LG A+GD +L ++ R+ L+ D ++R G+ F I+ Sbjct: 300 KHRP-FAVMFLDLDYFKAVNDSLGHAIGDKLLQAVADRLLAGLRNSDTVSRQGGDEFVIL 358 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L N+ A A + SI P N+ E I ++ S G + + + +L NA++A Sbjct: 359 LPEIENAADAASSAKKLLLSIGAPYNIDEHCIQISGSFGISLYPDHGDDAETVLNNADIA 418 Query: 681 MYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G N + F+ ++R ++ L A+E +E L Y P + L +I G Sbjct: 419 MYEAKETGRNAIRFFKPEMGLKATERQSLEVGLRRALEQNEFCLYYQPKVSLALGQITGA 478 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W P G + + F+ AE +I I +++ R W+ +P I I + Sbjct: 479 EALIRWQDPMLGLLLPAYFVTAAESSGLIVRIGRWVMREACRQASLWQ-TRGLPSIKIAV 537 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++ + D EG++ ++ +T P ++L +E V+M + + + +L LR++G+ L Sbjct: 538 NVSAVEFQDRHFVEGVKNILRETGLEPGCLQLELTEGVLMKDADSTASVLRELRQMGVQL 597 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 +DDFG S LSYL P D +K + S + + ++ +II + +N+ ++A+ Sbjct: 598 AIDDFGAGYSSLSYLRQFPIDILKIDQSFVNQIGGGARDGILISAIIGIGRNLNYIVVAE 657 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 I L CD Q + PL + +LL+ Sbjct: 658 GIETIEQKVYLQGQRCDEGQGYLFSHPLVAHEFERLLQ 695 >gi|71909346|ref|YP_286933.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71848967|gb|AAZ48463.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 582 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 146/583 (25%), Positives = 274/583 (46%), Gaps = 14/583 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 T + A ++G A S D + D V + G AS Sbjct: 1 MTDLVAATARQPATEGEVLSRAALLRAYEQSQDAILVTDRDNLIVAANGAFCQLSGYASD 60 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G L N + + + + + E + + + + ++I + Sbjct: 61 ELLGKDPRVLAS--DNSTAEHYASIWNALATK-DFWEGEIWDKNKNGERYNRWLKIAVLR 117 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ G I ++ +++ K+ + + A+ D LT +PNR +F +L L D+ Sbjct: 118 DAEGQIENHVANFSEMEASKEYADRLAYLAYHDPLTNLPNRLAFESQLAQALRGCERDNR 177 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +M+ID+D +K IND LG VGD++L + R+ E ++ D++AR+ G+ F I+L Sbjct: 178 -QLALMLIDLDNFKNINDTLGHHVGDELLQKVALRLRESVRSSDLVARIGGDEFVIVLPE 236 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + L A A +++++A + + + T SIG + + ++ +L+NA+ AMYH Sbjct: 237 IESPLTAARVANKVQQNMADSYRIADHALYATPSIGISLFPIDGSDANTLLRNADTAMYH 296 Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVE-----NSELYLVYHPIIRLMDEEIV 736 AK G N+ + + R++ +R+ ++ +L A+ +SE L + P ++ ++ Sbjct: 297 AKDAGRNNHQFYTARMNEAAGERLHMENELRQAISAISPGDSEFSLHFQPQVQTATGQVF 356 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 GLEAL++W++P +G +S F+ IAEE +I+ + +++ R I Q + I I Sbjct: 357 GLEALLRWNNPIFGQVSPMRFIAIAEETGLIQPLGDWVIWETCRLIRQM-KQHGIEDIRI 415 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 INI+++ L L ++ +S P I+L +ES M NPE + +L +L +GI Sbjct: 416 AINISAQQLRHENLLLLVRGALSCYDLRPEDIELEITESTAMQNPETTLSILDQLAAMGI 475 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914 L +DDFGT S L+YL ++P +K + S + AI + I + ++ ++ Sbjct: 476 VLAIDDFGTGYSSLAYLKHLPIQRLKLDRSFVKDIEIDANDAAICTATIALGHSLGLELV 535 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 A+ + E L +GCD +Q + P+ F + LK Sbjct: 536 AEGVETEAQRAFLASLGCDTLQGYLYSKPMPFEETIAYLKAHQ 578 >gi|146307747|ref|YP_001188212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] gi|145575948|gb|ABP85480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] Length = 717 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 145/586 (24%), Positives = 269/586 (45%), Gaps = 20/586 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442 F VI+ + + + + E+ + A S D + + + + G +S Sbjct: 137 FGVIRDITQQQVRADALRASEEKFAKAFHSSPDAITITERDTARYIEVNEGFTRLTGYSS 196 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G L +R ++ + L E + + + + ++P Sbjct: 197 AEVIGRTAFELNIWAFPEER----AVMLDHLAKNGQVLHMEMHGQHRNGDVRLVEVSVQP 252 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + NG + A DI+E K++ + A+ D LT +PNR ++RLT + L Sbjct: 253 L-DLNGS-SCLLLTARDISELKQAQAQVQHLAYHDALTNLPNRAMLINRLTQQIALLKRH 310 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 D +R ++ ID+D +K IND LG VGD VL +T R+ ++ D +ARL G+ F ++L Sbjct: 311 D-MRSALLFIDLDHFKHINDSLGHPVGDAVLRLVTARLEATVRLEDTVARLGGDEFVVLL 369 Query: 622 ISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 ++ A +R +A P+ L + VT SIG A T +++LK Sbjct: 370 CGLQGKRSEVTRQVRQVAEKLRHLLAEPMLLDGHHLQVTPSIGIALIPDHGETPADLLKR 429 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N ++ FR + + R+ ++ DL LA+ E L + P + D + Sbjct: 430 ADIALYRAKDSGRNAIQLFRSTMQDAVSARLRLENDLRLALARGEFELHFQPQVDARDGQ 489 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792 +VG EAL++W HP+ G S ++F+ + EE +I + ++L Sbjct: 490 VVGAEALLRWQHPQHGPQSPAQFIQVLEESGLIIEVGGWVLTEACHLCARLLADKLIDAE 549 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + ++ E + + + + +KL +E +V+ N + + + RL+ Sbjct: 550 RFSLCVNISPRQFRQHDFVERVAGCLRTSQLPHAMLKLEITEGIVIQNIDDTVGKMLRLK 609 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 K G+S +DDFGT S L+YL +P D +K + S + S I+R+I+ MA+++ Sbjct: 610 KHGVSFAMDDFGTGYSSLTYLKRLPVDMLKIDQSFVRDATSDPNDAGIIRAIVAMARSLG 669 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +IA+ + + + L C Q + P+ ++ LL + Sbjct: 670 LGLIAEGVEQQEQLDFLQAQDCHLYQGYLFSKPVPEDAFRALLGQH 715 Score = 97.7 bits (242), Expect = 1e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 10/151 (6%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + D R A+ G+ W WDI +V+ + + GL ++ I Sbjct: 23 EQTWRDAPRLLAALNGARLGAWYWDIDSGQVSWSRGAQALFGLDPERPLSSSVEYIELIP 82 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +R ++ + R+R D HW+ I ++G R G+ Sbjct: 83 DEERGAVLRQFNAILAGNDEGRALRHRIRWPDGSLHWLEISGSLQREADGR-RRMFGVIR 141 Query: 518 DITEQK------KSLEGILCNAFQ---DNLT 539 DIT+Q+ ++ E AF D +T Sbjct: 142 DITQQQVRADALRASEEKFAKAFHSSPDAIT 172 >gi|17548601|ref|NP_521941.1| hypothetical protein RS00808 [Ralstonia solanacearum GMI1000] gi|17430849|emb|CAD17531.1| probable signal transduction protein eal-ggdef domains [Ralstonia solanacearum GMI1000] Length = 578 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 148/567 (26%), Positives = 259/567 (45%), Gaps = 23/567 (4%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHINDRDNFRTI 467 V + + D R P A +LG+ ++ G I D Sbjct: 1 MVNALTEGLLVCDGQRRITYANPSAARLLGVPLDALVGMRLPEVVASAIDEFDTPIREVD 60 Query: 468 L--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513 + + +L F +R D + W+ P+ G+ + + Sbjct: 61 WPDGEVLAQGQPQLNQIFGMRCLDGRTVWVSTNWTPLYAEAGEPMTAAPAARHAQPYAVL 120 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DIT+ +++ + I A D LTG+ NR + DRL L L+ + R +VM +D+ Sbjct: 121 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-RSRVSVMFLDL 179 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG GD +L + R+ + D +ARL G+ F ++L S + Sbjct: 180 DRFKNVNDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGTGTRRV 238 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + +I P ++ +E+ + SIG A + +L+ A+ AMY AK RG N+ + Sbjct: 239 AERILAAIGAPFHIDGQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 298 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 +F S R I+ L A + +E Y Y P + + IVG+EALI+W+ +G Sbjct: 299 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSTDFGR 358 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + +F+ AEE +I I+ ++L + WR +P + + IN++ + +L Sbjct: 359 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ ++ + ++L +E +++ + LL LR +G+SL LDDFGT S LS Sbjct: 418 GMVRGALTSSGLPGEAVELEMTEGILIRDDPSLHTLLTELRALGVSLALDDFGTGYSSLS 477 Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + S + +R AI R+II MA+ + +A+ + ++ L+ Sbjct: 478 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLSE 537 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD Q + PL ++ L++E Sbjct: 538 IGCDEYQGYLLTRPLEPAAMHDLVREH 564 >gi|74317209|ref|YP_314949.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74056704|gb|AAZ97144.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation [Thiobacillus denitrificans ATCC 25259] Length = 836 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 133/555 (23%), Positives = 252/555 (45%), Gaps = 8/555 (1%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + + + D V + +LGL + + H + Sbjct: 269 QLLEILEATTDFVAIIEGDGRLRYLNRAGRAVLGLTATEDVSSRH--IAQCHPEWATHRL 326 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + R G Q E R AD + + + +N + IA DITE+K Sbjct: 327 LMEAFPTARRDGAWQGEIAARLADGREIPVSQVVLAHGGANEMPEFFSTIARDITERKHF 386 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + + A D LTG+PNR D++ ++ SA L +V+ +DID +K+IN+ LG Sbjct: 387 EQELRRQATHDALTGLPNRILLEDQIEAVVAHSARSHKL-ASVLFLDIDNFKRINESLGH 445 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 A GD +L +R+ + ++ D++AR G+ F I+L ++ I +R + P+ Sbjct: 446 AAGDAMLRHAAQRLRDCVRPTDVVARYGGDEFTIVLGDLSHVDNIPAILHKVRAAFETPL 505 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR- 704 + +E+ + S+G + + + +LKNA+ AMY +K G N + + + Sbjct: 506 VISGQEVYASFSVGVSVYPHDGDDGATLLKNADTAMYRSKASGRNRYQFYAPEMNARGQE 565 Query: 705 -VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + ++ DL A++ E L Y P + L D I G+EAL++W HP+ G I+ +F+ + E+ Sbjct: 566 LLSLETDLRRALDRGEFRLHYQPQLDLRDNRIAGVEALLRWKHPRDGVIAPGDFVPLLED 625 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I + ++L + R+ + P+ I +N++++ ++ L ++ ++ + Sbjct: 626 TGLIVPVGEWVLRNACTQYRACRES-GVAPVRISVNVSARQFREDTLLRQVEQVLREECM 684 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P ++L +ES M + + +L L +G+ L +DDFGT S L+YL P D +K Sbjct: 685 PPHHLELEITESTAMQDVAATGDILAALDALGVRLAIDDFGTGYSSLAYLKRFPLDALKI 744 Query: 884 NGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + + + AI + I + + ++A+ + + L R CD IQ H + Sbjct: 745 DQAFIRDAPRDANIAAIAEASISLGHKLGLEVVAEGVETAEQLAFLRRRACDLIQGFHFS 804 Query: 942 SPLGFNSILKLLKER 956 PL +++ L Sbjct: 805 RPLPADALTPFLARH 819 Score = 78.1 bits (191), Expect = 8e-12, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 8/136 (5%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R S AV + D V+ D P + G ++ G + +D F Sbjct: 147 RLSQAVEQAADSVFITDRQGTIQYVNPSFERLTGYSAAEAIGRTPALIKSDRHDD-AFFH 205 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + D+ + R Q R D + I P+ + I ++ D+T++ + Sbjct: 206 KLWDTILAGRI--FQETLVNRRKDGGLFYEEKTIAPLFDEGRGIAGFVSTGRDVTDRIRD 263 Query: 526 LEGILCN-----AFQD 536 + A D Sbjct: 264 EQTRGQLLEILEATTD 279 >gi|118480382|ref|YP_897533.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str. Al Hakam] gi|118419607|gb|ABK88026.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str. Al Hakam] Length = 910 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 181/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%) Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 K L+ +++ + I L + + ++ A+ + ++ YI + Sbjct: 72 AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 131 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287 GF K + S L + I + I F + L + W +I Sbjct: 132 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 191 Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 S + I L+ Y + I T+ + Y F + G+K LI + Sbjct: 192 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 251 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384 + I + + K + ++ V + +LIG Sbjct: 252 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 311 Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417 + +L + + +R D Sbjct: 312 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 371 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + ++ + + L +I D D + L + Sbjct: 372 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQ--LTKEGS 427 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 E R + + ++++ I + P N +++ GIA DIT + + + AF D Sbjct: 428 PQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 486 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ F L IL+ + N VM +D+D++KKIND LG +GD +L+ + + Sbjct: 487 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAK 545 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ D++AR G+ F I+L + A A + + P + + E+++T S Sbjct: 546 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 605 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG A + +E++KNA++AMY AK G N F + ++ +L A+ Sbjct: 606 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 665 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE I + ++L Sbjct: 666 QQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 725 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W +Q + + +N++ +L + ++ +T P + + +ES Sbjct: 726 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 784 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 + + + L +L+ +GI +++DDFGT S L+YL P +T+K + G + Sbjct: 785 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 844 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ SII ++K + +IA+ + E K L CD+IQ ++ P+ + +LL Sbjct: 845 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 904 Query: 954 KER 956 ++ Sbjct: 905 HKK 907 >gi|27380975|ref|NP_772504.1| hypothetical protein bll5864 [Bradyrhizobium japonicum USDA 110] gi|27354141|dbj|BAC51129.1| bll5864 [Bradyrhizobium japonicum USDA 110] Length = 799 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 167/799 (20%), Positives = 313/799 (39%), Gaps = 40/799 (5%) Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV------- 243 +R + +G A L + R+ ++W+ L + G + Sbjct: 14 WRLVALGGAVCLLASAAAISLFQRARAASGGARVSWIALDAVVAGCGIWATHFIAMQAYG 73 Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYITFSGIACIAI-LFCMSF 301 G I + + ++ + R G A+ M Sbjct: 74 PGAGGAYNIPVTVLSLIFAIAVTFVGLSISVSATRTIPVALGGAVVGGGVAAMHYTGMMA 133 Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYER-------AVLLIPAWILIFIWFIGL 354 A T+A ++ F + R ++ ++ F + Sbjct: 134 LEIPARIGWATDTVAVSIVLGIVFGSLALVVAGRRDGVANALGATVLLTVAIVSHHFTAM 193 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE--RQSL--- 409 + +I + L V+ V +A + GE RQ + Sbjct: 194 GAVELTPDPSIVISGLSIPPASLSVLTASAAVAIIAIALAAAVLDRRAKGELGRQQVVLD 253 Query: 410 -AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 A+ + +D + A +L ++ G + + + + Sbjct: 254 TALENMSQGLCMFDADGKIMLFNERYAAMLRRTDIALTGRLLVDVLR-----EEQAKGQW 308 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 RL + R +Q + R + N ++ DITE ++ Sbjct: 309 QGDADEFFARLVIDAREGRTTSQVVNRLGRSIRVVNQPMQGGGWVATFEDITEWLEAQAK 368 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 I A D LTG+PNR F ++L L T + V+ +D+D +K IND LG +G Sbjct: 369 ISHMARHDALTGLPNRVLFHEQLEQGLRR--TGSGDQLAVLCLDLDHFKDINDSLGHPIG 426 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L + RR+ + D +ARL G+ F ++ I + A + + I+ P + Sbjct: 427 DALLKEVGRRLKATVGESDTVARLGGDEFAVVQIGRSEEAAARCLAGRLVEVISAPYEID 486 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706 + +I + SIG + + E+LKNA+LA+Y AK G F + + R + Sbjct: 487 DHQIVIGVSIGISLSPQDGSNADELLKNADLALYRAKADGRGTYRFFETGMDARAQARRL 546 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ DL A++ E Y PI + +V EAL++W+HP+ G I+ F+ +AEE + Sbjct: 547 LEMDLRAALQRDEFQPYYQPIRDVASGRVVVFEALLRWNHPQRGLIAPINFIPLAEETGL 606 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + F+L D +W D + + +N++ + L + A ++ + Sbjct: 607 IVQLGEFVLRSACTDAATWPD-----DVDVAVNLSPVQFRNPNLIASVTAALTVSGLPAR 661 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 R++L +ESV++ N E + L LR +G+ ++LDDFGT S LSYL PFD +K + S Sbjct: 662 RLELEITESVLLQNSEATLTTLHELRAMGVRISLDDFGTGYSSLSYLRSFPFDKIKIDRS 721 Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 ++ E +AI+R++ + +++ A+ + + ++ L R GC Q + P Sbjct: 722 FVSELATREDSMAIIRAVTGLGRSLGIVTTAEGVENDAQLELLRREGCTQAQGYLFSKPR 781 Query: 945 GFNSILKLLKERFPLVKNT 963 + + +L+ P ++ + Sbjct: 782 PASDVALMLER--PRLRAS 798 >gi|77359305|ref|YP_338880.1| hypothetical protein PSHAa0338 [Pseudoalteromonas haloplanktis TAC125] gi|76874216|emb|CAI85437.1| conserved protein of unknown function; putative signaling protein [Pseudoalteromonas haloplanktis TAC125] Length = 842 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 156/564 (27%), Positives = 274/564 (48%), Gaps = 15/564 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP- 454 + LA + S D + + P + G + G + L Sbjct: 273 ALQHSQRNLYLANKIIDSSLDGIMITHSNSTIMQVNPAFTQLTGYKEHEVIGKCPSILSS 332 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D+ + + D+ + G Q E R + + + I + N Y Sbjct: 333 GRH--DKSFYIKMWDAI--NKTGVWQGEICNRKKNGDIYIEWLTIIEIKEPNNSDAIYAA 388 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +DITE+K + + I+ A+ D LTG+PNR+ F DRL L + D +L VM ID+D Sbjct: 389 IFSDITERKNAEDKIVQLAYFDELTGLPNRRLFNDRLKMALAAAHRDQHL-LAVMFIDLD 447 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K++ND LG + GD +L + RI L D LARL G+ F +L N +A A Sbjct: 448 RFKEVNDSLGHSAGDCLLTLVAARIEATLNEGDTLARLGGDEFV-VLCEINKIDAVASLA 506 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P L E+ VTASIG A + + S +LK+A++AMY +K G N + Sbjct: 507 DKILNNLNSPFQLDHVEVGVTASIGAAVYPDDGLDSETLLKHADIAMYRSKDVGRNSFQL 566 Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F+ S +R+ + A++N+E L + P L E+I+G+EAL++W P G I Sbjct: 567 FKPSMNARSLERLAMMSRFQHALDNNEFELYFQPKQCLKSEQIMGVEALLRWHDPDLGMI 626 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEEL +I ++L+++ + + + W+ + + + INI++ L +L Sbjct: 627 SPAQFIPLAEELGLIVRLDLWVINQAGKVLTLWQKEGLVAG-RLAINISACHLSQGKLAN 685 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ S +++ +ES + + +++ L +L+K+G+ + LDDFGT S LSY Sbjct: 686 NIGTMLKHYNLPGSLLEIELTESSFISSFTQAKTQLQQLKKLGVHIALDDFGTGYSALSY 745 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +PFDT+K + S + ++ I+ ++I +A N+ ++A+ + L + Sbjct: 746 LTKLPFDTLKIDASFIAKIPDEYGNSQIVAALIALASNLNLMVVAEGVEQPAQKNYLISL 805 Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954 GC+ IQ + PL + Sbjct: 806 GCNVIQGYYYCRPLTQRQWFDFYR 829 >gi|329905370|ref|ZP_08274109.1| hypothetical protein IMCC9480_2501 [Oxalobacteraceae bacterium IMCC9480] gi|327547618|gb|EGF32413.1| hypothetical protein IMCC9480_2501 [Oxalobacteraceae bacterium IMCC9480] Length = 822 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 159/718 (22%), Positives = 291/718 (40%), Gaps = 29/718 (4%) Query: 265 LIIFLFMYLHWNRWHAKVGYIT--FSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322 L+ L +L R ++ + + P ++A +++ Sbjct: 111 LLARLEAFLRLRRHSEELQRDSDLRYRSTFDLAPVGIVHTTPDGDITLANPRFGAMLRLS 170 Query: 323 TYFIIYH----GMKGYERAVLLIPAWILIFIWFIGLW---MAITKRLDNDIIQPALVGGL 375 + + G +R + L+ + ++ + + + + Sbjct: 171 GPALPGRKITDMVAGEDRDQMQAAIAALLAGSQTETASFDLRFARQDGSLLWTSVTLSLV 230 Query: 376 --VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 I +I+ + Q + + + + D + Sbjct: 231 RGTGIAPRHLLALIEDISLRKEMEQALRESERFVRATIDALSEHICVVDETGRLLAVNKA 290 Query: 434 IATILGLASGSMHGPIRNWLPYI---------HINDRDNFRTILDSFVGYRRGRLQYEFR 484 A G S + Y+ + D + + + + YE+R Sbjct: 291 WAN-YGNDSDEVTAIDWRGFNYLTVCDAAAASGLEDGRLLAQGMRAVLAGTQEDFHYEYR 349 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 A R +R + DIT+ K + + + A DNLTG+PNR Sbjct: 350 CGTAA---RPSWFLARLTRFPLDGPMRIVVSHEDITDSKLAQKHLTYLAHYDNLTGLPNR 406 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 F DRL +L + N VM ID+D +K +ND LG A GD VL +RRI + L+ Sbjct: 407 VLFYDRLKQVLLQAERS-NWTVGVMFIDLDHFKAVNDTLGHAAGDTVLQQASRRILDSLR 465 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D + RL G+ FG+ L A A + +++++P + E+ VT IG + Sbjct: 466 ANDTVGRLGGDEFGVFLPDLATPQDAAMLAGKITQALSLPFVIAGTELFVTPIIGITLYP 525 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722 T+ ++ +A+ AMY AK G N + F ++ L A+E EL L Sbjct: 526 RDGNTADVLISSADTAMYRAKELGRNGHQFFTPHMTARMSAQSRLESGLRKALERQELSL 585 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P + + I G+EAL++W HP+ G IS ++F+ IAE+ +I I ++++ Sbjct: 586 HYQPQVDIASGRITGVEALLRWHHPEMGIISPAQFIPIAEDTGLIVPIGAWVMQAACLQN 645 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 ++W+ PI + +N++++ N++ ++ ++ T S ++L +E +VM N E Sbjct: 646 MAWQRAGLA-PIVMAVNLSARQFKHNDVETMVREVLQDTGLDGSYLELEVTEGIVMENTE 704 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRS 901 + L+ IG+ L+LDDFGT S L YL P DT+K + S ++G + I + Sbjct: 705 ALIATMDALKAIGVRLSLDDFGTGYSNLVYLKRFPLDTIKIDRSFVSGIGQGDDAVIAAT 764 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 +I + ++ +IA+ + L ++GCD +Q + PL + LL + P Sbjct: 765 VITLGHHLNLKVIAEGVETPDQRNVLQQLGCDIMQGYLFSRPLTAEATTALLWQHQPG 822 >gi|196041007|ref|ZP_03108304.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] gi|196028175|gb|EDX66785.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] Length = 735 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 162/736 (22%), Positives = 319/736 (43%), Gaps = 32/736 (4%) Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305 + +LI ++ + ++I + + + + T + LF ++ Sbjct: 4 TNTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHLFQLNAGIKP 63 Query: 306 VTASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGL 354 + + ASI+L I+Y K ++ ++P + +I + L Sbjct: 64 SSEVSYLVHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIL 123 Query: 355 W------MAITKRLDNDIIQPALVGGL----VLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + + + I+ + ++ Q + Sbjct: 124 FQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGVSALSKSE 183 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 +R D V+ ++ + ++ + + L +I D D Sbjct: 184 QRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLL 241 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + L + E R + + ++++ I + P N +++ GIA DIT + Sbjct: 242 QKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYE 298 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + AF D LTG+PNR+ F L IL+ + N VM +D+D++KKIND LG Sbjct: 299 KQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLG 357 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 +GD +L+ + +R+ L+ D++AR G+ F I+L + A A + + P Sbjct: 358 HGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKP 417 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 + + E+++T SIG A + +E++KNA++AMY AK G N F + Sbjct: 418 FFIKDEELSITPSIGIAMYPDCGTNVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQN 477 Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AE Sbjct: 478 ESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAE 537 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 538 ETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETE 596 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 597 LKPEALDIEITESIAINQNQSVVSKLEQLQDLGIQISIDDFGTGYSSLAYLTKYPINTLK 656 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + G + AI+ SII ++K + +IA+ + E K L CD+IQ + Sbjct: 657 IAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFI 716 Query: 941 ASPLGFNSILKLLKER 956 + P+ + +LL ++ Sbjct: 717 SKPVSSKDVWRLLHKK 732 >gi|127513706|ref|YP_001094903.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella loihica PV-4] gi|126639001|gb|ABO24644.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella loihica PV-4] Length = 1010 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 145/574 (25%), Positives = 257/574 (44%), Gaps = 12/574 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 T + V + + + E + S + + D +T I G + Sbjct: 436 TRMCGVHSDITEQKKVQESLELAASVYNNSSEAMSVQDHKGHIITINAAFTAITGYSQEE 495 Query: 445 -MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + IR R + + + G Q E ++ + + + + I + Sbjct: 496 ALTQNIRILQSSRTP--RSQYDEMNSAIRD--TGYWQGELWIKNKSGEEYMVWLTINTIF 551 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + +G + R + + +DITE+K++ I A D LTG+PNR+ L+ L T + + + Sbjct: 552 DQHGQVYRRVALFSDITEKKEAEHIIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRN-H 610 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +M +D+D +K++ND LG +GD +L +R+ ++ D++ARL G+ F ++L Sbjct: 611 SHFALMFLDLDFFKEVNDTLGHDMGDLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSG 670 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + A ++ + IA P +L + ++ASIG + + +LK+A+ AMY Sbjct: 671 IDSPSGVERVAQSILERIAEPYSLGDETAYISASIGITIYPDDATSIEGLLKHADQAMYA 730 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N F S R+ + +DL A+ E L Y PI+ + + EAL Sbjct: 731 AKEQGRNRFHYFTPSMQEYARYRMALIKDLRNAINRKEFELFYQPIVDMNKLGVYKAEAL 790 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G +S EF+ +AEE +I I ++ E+ A+ WR Q + I I IN + Sbjct: 791 IRWVHPQRGLVSPGEFIPVAEETGLINEIGNWVFEKAAQQSARWRTQHGVE-IQISINKS 849 Query: 802 SKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 D + AL+ S + I + +E +++ L R GI ++L Sbjct: 850 PIQFRDEGDTFSDWLALLRHLELSSNAICVEITEGLLLDASMGVTDKLLAYRDAGIQVSL 909 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL D +K + S +A+ +II MA + +IA+ + Sbjct: 910 DDFGTGYSSLAYLKKFDIDYLKIDQSFTRNLESDSDGVALCEAIIVMAHKLGIKVIAEGV 969 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + L GCD+ Q + P+ +L Sbjct: 970 ETQFQHDILASAGCDFAQGYLYSKPVSLPEFERL 1003 Score = 122 bits (306), Expect = 4e-25, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 1/156 (0%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ + + + + + ER +L + S +WDWDI + P A +L Sbjct: 304 MVDMVIAGLIDITEHKRADMAMRTSQERLALVLESSDLGMWDWDIKSNETKRNPWCAKVL 363 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G ++ R W+ IH DR +D + + E+R+ + + HW++ Sbjct: 364 GCDLERLNRDSRIWIDAIHPQDRMAVLNSIDRHLKGETQKHYIEYRLISLSGEEHWILDT 423 Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + + NG R G+ +DITEQKK E + A Sbjct: 424 GKVVSRDRNGLPTRMCGVHSDITEQKKVQESLELAA 459 Score = 84.2 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 91/317 (28%), Gaps = 10/317 (3%) Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-YLHWNRWH 279 + +V Y ++ S+ L + + + + ++ Sbjct: 13 AALLLIMVFIYDAVPRHHRSEYFLLWRLIMGAVIGGVTVLTMMTSWEYQPGVFIDTRSVV 72 Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA-- 337 + + F G+ Y + + I++ + ++ + A Sbjct: 73 LAISGLFFGGLPTFVAASVACAYRLFQGGDGMLVGVTVILVSALFGSLWRYYRKTTIADL 132 Query: 338 ---VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 L + ++L F L++ + ++Q AL L+ ++ ++ Sbjct: 133 SFIELYLFGFLLHFSTLSLLFILPFSMFVDLLVQIALPVMLIFPIVTALLGMMLARRLEV 192 Query: 395 YFSQGIF-SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 I D + + + + P + +L + + R W Sbjct: 193 ERDAKIQLQDDFIFRSQFNVGNMGIAITSVDQHWIKVNPRLCKMLKYSETELLN--RTWT 250 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + D T + + + R A D + + + + N N + I Sbjct: 251 ELTYFEDLKADMTQFQRMLKGEIDAYEMDKRFVAKDGEIVYTHLTVACRRNHN-MVDMVI 309 Query: 514 GIANDITEQKKSLEGIL 530 DITE K++ + Sbjct: 310 AGLIDITEHKRADMAMR 326 >gi|89094353|ref|ZP_01167294.1| regulatory component of sensory transduction system [Oceanospirillum sp. MED92] gi|89081412|gb|EAR60643.1| regulatory component of sensory transduction system [Oceanospirillum sp. MED92] Length = 872 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 149/575 (25%), Positives = 273/575 (47%), Gaps = 13/575 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I F + Q + + + S AV S + + G + Sbjct: 296 INFQLQQEIDVRLRAEENLRV----LSQAVSQSPISIIIAGVDGGVEYVNQAFTDCSGFS 351 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G +L + + + L + + + E + Q +W I P Sbjct: 352 VEEIKGNDFTFLNNL--DSQPELSKELWDAINNGQE-WRGELANLRKNGQRYWEYTHISP 408 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 +++ G I Y+ I NDITE+K+ + I+ A D+LT +PNR +DRL + ++ + Sbjct: 409 VTDETGQITHYLIIKNDITERKEQEQKIIHQAHFDSLTELPNRSLAMDRLAQGVIKASRN 468 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 +++ +M ID+D +K +ND LG +GD +L+ ++R+ + ++ D +ARL G+ F II+ Sbjct: 469 NDV-LALMFIDLDGFKNVNDSLGHDIGDQLLIHASKRLSDSVRNTDTVARLGGDEFLIIM 527 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + +++S P N+ E+ VT SIG + + +L+NA+LAM Sbjct: 528 EGLVSRRDCLPVLNKIKESFGAPFNIGSNELKVTPSIGLSLFPDDGQDGDVLLRNADLAM 587 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F ++ R ++ L A+E EL+L+Y PI+ E+ GLE Sbjct: 588 YQAKEAGRNTHHFFNQEMHKNLRRRLEIENQLKHALEKGELFLLYQPIVEAKTYELKGLE 647 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+WD+ G + EF+ +AE+ +I I +++ + + W I I IN Sbjct: 648 ALIRWDNELLGRVMPDEFISVAEQSGLIIPIGNWLVNEVLAQMKCWHGSVL-EDIAISIN 706 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ + + D L + + K ++ S++ L +E +++ NP ++ L RL+ +G+ L Sbjct: 707 VSPRQIQDQSLQPLINDALEKYSFTASKLILEVTEGLLIRNPLEAKSNLQRLKDLGVQLA 766 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LS L PFD +K + + + + A++ + + M + + I+A+ Sbjct: 767 MDDFGTGYSSLSNLKNFPFDILKIDRTFVRDIEKDDDDYALVSAAVSMGRGLGLRIVAEG 826 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 I + ++ L+ M CD +Q + + PL +I Sbjct: 827 IETKNQLEILSDMQCDSVQGFYFSRPLSAEAIKDW 861 >gi|307824848|ref|ZP_07655071.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacter tundripaludum SV96] gi|307734206|gb|EFO05060.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacter tundripaludum SV96] Length = 1017 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 151/613 (24%), Positives = 281/613 (45%), Gaps = 32/613 (5%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPD 433 ++ ++ + + L + +A S + + D + + Sbjct: 407 LIDLMRGLTEDLSYALDNFDREKLRLKAEHELRIAAAAFESQEGILVTDADNNILRVNKS 466 Query: 434 IATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 + G ++ + G L F + + R Q E + + Sbjct: 467 FTQLTGYSADEVIGKSAGILKSGRQAPE----FYAAMWESI-NRDKYWQGEIWNKRKNGN 521 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + I ++N G + Y+G DI+++K E I A+ D+LT +PNR DRL Sbjct: 522 IYPEWLCITAITNPEGAVTNYVGTFTDISQRKADEERIKDLAYYDSLTKLPNRTLLFDRL 581 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 L+ S + +M +D+D +K +ND LG GD +L+ + RR+ ++ D +AR Sbjct: 582 NLALNASNRN-KTHGALMFLDLDNFKTLNDTLGHDRGDQLLIEVGRRLQSCVREVDTVAR 640 Query: 612 LSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLER---------EITVTAS 657 L G+ F ++L + + A +R ++A L E T S Sbjct: 641 LGGDEFVVMLECLDEQEIEAAVQAHTVAEKIRSNLAEFYLLKSNIDNKLQPFVEHYSTGS 700 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IGF + + +S E+LK A+LAMY AK G N + +F + + ++ DL A+ Sbjct: 701 IGFVLFLGHETSSEELLKRADLAMYQAKQAGRNVIRAFIPEMQEALNLRASLETDLRNAL 760 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + EL L Y + VG EALI+W+ + G IS +EF+ +AEE +I +I ++L Sbjct: 761 DRGELSLHYQVQVD-ASGRPVGAEALIRWNQAERGMISPAEFIPLAEETGLILSIGYWIL 819 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 ++ ++ W + + +NI+S+ L + E + A++++T +P+ +KL +ES Sbjct: 820 KQGCETLVDWAKHPETRELKLAVNISSRQLSQADFVERVCAMLAETGANPALLKLEITES 879 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 V++ N + + + +R +G++ ++DDFGT S LSYL +P + +K + S + Sbjct: 880 VILDNVDDTIAKMHAVRDLGVNFSMDDFGTGYSSLSYLQKLPLEQLKIDQSFVRNMAFNN 939 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+R+I+ + KN++ +IA+ + I + LTR GC Q P+ ++ + L Sbjct: 940 HDSAIIRTILALGKNLDINVIAEGVETTIQRELLTRYGCQKFQGYLFGRPVPADAFKQSL 999 Query: 954 ---KERFPLVKNT 963 + + P + N Sbjct: 1000 LVGQAKKPSMHNA 1012 >gi|289649853|ref|ZP_06481196.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi str. 2250] Length = 642 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 152/635 (23%), Positives = 289/635 (45%), Gaps = 20/635 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394 + + + + + L I + Q VL+ +++ F ++ ++ Sbjct: 14 LYGLLSILWFVTCDLLLHFFIKEPARLAFWQLMAGYSWVLLSVVMIFIARDRLRSLIGGD 73 Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 Q +D +R LA + + V D V I G + + G Sbjct: 74 ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H + ++ + S + G+ E R + + R + +G Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTFRSVMGDDGQPR 189 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + +DIT K+S + + D LT +PNR DR++ L + +++ Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSA-RASKCGCALLL 248 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND LG VGDDVL ++ R+ + LAR G+ F +++ + + ++ Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + ++ P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368 Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + RV + +L A+E +L + Y P+ L+ I G+EAL++W HP+ Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAIELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ IAE+ +I I+ ++L+ + +W + +P F+ +N++S+ Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + + +T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT S Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L L +P +K + + G + IAI+R++I +A ++ ++A+ I Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 L GC Q A P+ + P+ K Sbjct: 608 LLGNGCQLGQGYWFARPM-VAQAIDW--THAPVFK 639 >gi|330962179|gb|EGH62439.1| sensory box protein/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 705 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 139/585 (23%), Positives = 261/585 (44%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H + Q D ER + S D ++ + + Sbjct: 122 LLRLKSFGDYLKSHSMILEEQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSGNDVE 238 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 239 VEIHRQAYR--TGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L +A + + +++D +K IN+ G +GD VL+ ++ R+ E L D L R+ G Sbjct: 297 LTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDQVLLEVSHRLSECLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F +IL+ + +RK++ +P ++ + I +TASIG A + + E++ Sbjct: 356 DEFALILMIRDGQADTRKTLERIRKALRVPFHVEGQSIVMTASIGIALYPEDGEDARELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM AK G + + R+ ++ L AVE +VY P + L D Sbjct: 416 RHAYTAMNSAKKFGIDSYRFYTAQMNADVSARLELETALRDAVEKQAFEIVYQPKLNLDD 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I GLEAL++W P +S + F+ + E L +I + ++++ + I W+ Sbjct: 476 NRICGLEALLRWPRPGQPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGL 535 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +N++ + + ++ L ++ ++K P +++ +ES +M N + L L+ Sbjct: 536 -FQVAVNVSGQQISNSSLVADIRQALTKHRVEPRWLEVELTESSLMENTSHTIATLETLK 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P +K + + + S + AI R+II +A ++ Sbjct: 595 SAGVSISIDDFGTGYSSLAYLRRFPIHKLKIDIAFVREVTSNPQDAAIARAIIELAHSLG 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + + L+ Sbjct: 655 LKVIAEGVETPEQLAFLRESHCDQIQGYLISKPLPLAELERFLRA 699 >gi|313202379|ref|YP_004041037.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441695|gb|ADQ85801.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 681 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 144/565 (25%), Positives = 271/565 (47%), Gaps = 10/565 (1%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + + E SL S +++ +D R A + G+A + G + Sbjct: 122 ARDVTDAMRREREYHSLI-ENSPNLIVRFDTACRRTFVNQKTANLYGVAEDVLLGKTPSE 180 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 P D + V + A D + I + +++G + Sbjct: 181 FPG---GDSAYGYEQVVKEVFKSGRSAAMDLHWHAPDGNSRIIHIWLAAELDASGLPIAV 237 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 IG+ D+TE + E I A+ D LT +PNR +DR+ + + ++++D Sbjct: 238 IGMGQDVTETYEYQERIHHLAYFDTLTKLPNRALLIDRVEQTIAEAERHA-YPFGLIMLD 296 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K+IND LG +GD +L + R+ + ++ D +ARL G+ FGI++ I Sbjct: 297 LDRFKEINDTLGHTLGDVLLCEVASRLEKCVRPYDTVARLGGDEFGILVSEMRVPENITR 356 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + ++ P + ++ VTAS+G A++ S ++LK A+ A++HAKH G N+ Sbjct: 357 VADKVLQAFDQPFVVDGHDVFVTASLGIAAYPSDSQAVDDLLKYADSALFHAKHLGRNNF 416 Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + ++R ++ +L A++ E L Y P++ L EI+G EAL++W H Sbjct: 417 QFYSADLTIKAAERREVETNLRFALKKEEFLLHYQPLVDLATREIIGAEALLRWQHESGK 476 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 I +F+ IAEE +I I +++ + ++ P+ + +N++++ L N+L Sbjct: 477 LIMPDKFIGIAEETGLIIPIGEWVMRSAC-QVAVALNRGRPRPVTVAVNLSTRQFLHNDL 535 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 +QA++++T IKL +ES+++ N + + +L L +G+ +++DDFGT S L Sbjct: 536 VSSIQAILAETGCHTDWIKLEITESLLLENTDNIQRMLQSLSAMGLCISIDDFGTGYSAL 595 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL P +K + S + T+ R I+++I+ +A+N+ ++A+ + L Sbjct: 596 SYLHRFPVRELKIDRSFTSDITDNAERALIVQAIVSLARNLNKNVVAEGVETLEQADYLH 655 Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953 +MGC Q + PL L LL Sbjct: 656 KMGCPQAQGYLFSKPLPLEQFLALL 680 Score = 51.5 bits (122), Expect = 8e-04, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 17/144 (11%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLP 454 + I + + + +VW D + + A + G++ + G Sbjct: 5 AQEKITAREKYLRTLLDNFPFMVWLKDTKSRLLAANTEYARVAGVSSPHELEGKTD--FD 62 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEF------RVRAADNQFHWMIIRIRPMSNSNGD 508 + + +V R ++ E R+R AD + W+ + +G+ Sbjct: 63 FFDPE-------LAKEYVEGDRQAMESELPVGTVNRLRTADGKDIWIESYKSRLV-IDGN 114 Query: 509 ILRYIGIANDITEQKKSLEGILCN 532 I +G A D+T+ + Sbjct: 115 IEGTLGYARDVTDAMRREREYHSL 138 >gi|302878069|ref|YP_003846633.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302580858|gb|ADL54869.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 1275 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 138/577 (23%), Positives = 268/577 (46%), Gaps = 13/577 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I F + Q + T Q ++ + S D + + + V I G Sbjct: 567 ISFALKQIHINTIKRQQE--TELKLAEQVFSRSADAMIITNPDNNIVRVNQAFCEITGYT 624 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 S + G L D D FR++ S +G Q E R + + + I Sbjct: 625 SEEVIGKNPRILKS-EKQDHDFFRSLWRSL--ELQGSWQGEIWNRRKNGEIYPEWSSINA 681 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + +++G ++ Y + +D+ QKK+L + D LT +PNR DR+ + + + Sbjct: 682 VKDASGRVVNYFAVFSDLL-QKKALAELDHLKHYDALTDLPNRALLEDRIESSITHARQY 740 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + V+ +++D + +ND+L A GD VL++ +R+ + ++RLS + F I L Sbjct: 741 ERF-IGVIFLNLDHFHTVNDMLSHAGGDQVLIATAKRLMDAAPAQASISRLSADTFVIAL 799 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 N S +I A + + I P+ + ++ + ++A +G + + ++ ++K+A+ A+ Sbjct: 800 PDLNTSEEINRTAELIAQKIYQPLTVADQSVQLSARMGISVYPIDGNDATTLMKHADAAL 859 Query: 682 YHAKHRGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 AK G + F ++ + + +L A+ + L L Y P + ++ +I+G Sbjct: 860 ADAKQCGVRNSFRFYSSSMNEHAHKLLTMGAELRNAISQNRLVLHYQPQVDIITGQIIGA 919 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+ +HP+ G IS EF+ +AEE +I + +++ R + W + I I Sbjct: 920 EALIRINHPERGIISPGEFISVAEETGLIIPMGTWVIREACRQMQQWH-LDKNIELTIAI 978 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ L ++L E + + + + ++L F+ES +M N + ++ + + +G+ L Sbjct: 979 NLSPLQLHQSDLPEIVSLALHDSGLNARYLELEFTESAIMKNVRETVAIMNKFKAMGLHL 1038 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S LSYL P D +K + S ++ AI+++II + + + T IA+ Sbjct: 1039 SIDDFGTGYSSLSYLKQFPVDKLKIDQSFVSNITQDPNDAAIVQAIIALGRTLGMTTIAE 1098 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + E + L + C +Q ++PL LL Sbjct: 1099 GVETEAQLGYLRSVNCKEMQGYLYSAPLPAEEFAALL 1135 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 16/158 (10%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I +Q + ++ I + + V+ D + + A LG+ Sbjct: 264 IKLNQLQADMLNRQLAESIMAWKRPFLDLLDNLPLKVFIKDTRSNYIACNKSYADDLGIQ 323 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH------WM 495 + G D D + L R+ + + W+ Sbjct: 324 QSEIAGKS----------DLDFYPASLAQHYREDDARVIESDQTITMVGPYLAGSRQTWV 373 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 I P + GDI IGI D+T + + + + A Sbjct: 374 QISKSPWHDGRGDIGGVIGIFQDVTHEYQMNKALQRKA 411 >gi|254000421|ref|YP_003052484.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253987100|gb|ACT51957.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 681 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 145/565 (25%), Positives = 271/565 (47%), Gaps = 10/565 (1%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + I + E SL S +++ +D R A + G+A + G + Sbjct: 122 ARDVTDAIRREREYHSLI-ENSPNLIVRFDTACRRTFVNQKTANLYGVAEDVLLGKTPSE 180 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 P D + V + A D + I + +++G + Sbjct: 181 FPG---GDSAYGYEQVVKEVFKSGRSAAMDLHWHAPDGNSRIIHIWLAAELDASGLPIAV 237 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 IG+ D+TE + E I A+ D LT +PNR +DR+ + + ++++D Sbjct: 238 IGMGQDVTETYEYQERIHHLAYFDTLTKLPNRALLIDRVEQTIAEAERHA-YPFGLIMLD 296 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K+IND LG +GD +L + R+ + ++ D +ARL G+ FGI++ I Sbjct: 297 LDRFKEINDTLGHTLGDVLLCEVASRLEKCVRPYDTVARLGGDEFGILVSEMRVPENITR 356 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + ++ P + ++ VTAS+G A++ S ++LK A+ A++HAKH G N+ Sbjct: 357 VADKVLQAFDQPFVVDGHDVFVTASLGIAAYPSDSQAVDDLLKYADSALFHAKHLGRNNF 416 Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + ++R ++ +L A++ E L Y P++ L EI+G EAL++W H Sbjct: 417 QFYSADLTIKAAERREVETNLRFALKKEEFLLHYQPLVDLATREIIGAEALLRWQHESGK 476 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 I +F+ IAEE +I I +++ + ++ P+ + +N++++ L N+L Sbjct: 477 LIMPDKFIGIAEETGLIIPIGEWVMRSAC-QVAVALNRGRPRPVTVAVNLSTRQFLHNDL 535 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 +QA++++T IKL +ES+++ N + + +L L +G+ +++DDFGT S L Sbjct: 536 VSSIQAILAETGCHTDWIKLEITESLLLENTDNIQRMLQSLSAMGLCISIDDFGTGYSAL 595 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL P +K + S + T+ R I+++I+ +A+N+ ++A+ + L Sbjct: 596 SYLHRFPVRELKIDRSFTSDITDNAERALIVQAIVSLARNLNKNVVAEGVETLEQADYLH 655 Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953 +MGC Q + PL L LL Sbjct: 656 KMGCPQAQGYLFSKPLPLEQFLALL 680 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 17/144 (11%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLP 454 + I + + + +VW D + + A + G++ + G Sbjct: 5 AQEKITAREKYLRTLLDNFPFMVWLKDTKSRLLAANTEYARVAGVSSPHELEGKTD--FD 62 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEF------RVRAADNQFHWMIIRIRPMSNSNGD 508 + + +V R ++ E R+R AD + W+ + +G+ Sbjct: 63 FFDPE-------LAKEYVEGDRQAMESELPVGTVNRLRTADGKDIWIESYKSRLV-IDGN 114 Query: 509 ILRYIGIANDITEQKKSLEGILCN 532 I +G A D+T+ + Sbjct: 115 IEGTLGYARDVTDAIRREREYHSL 138 >gi|218531236|ref|YP_002422052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacterium chloromethanicum CM4] gi|218523539|gb|ACK84124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacterium chloromethanicum CM4] Length = 1003 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 146/579 (25%), Positives = 256/579 (44%), Gaps = 14/579 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A+ + S + V+ + V +A + G Sbjct: 431 HICTFTDLTASRQSEAALRSAEADYQSLFQNAVIGVYRARLDGGIVQANRALARLHGYGD 490 Query: 443 GSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + P + YI + F L+ E R R A + W+ Sbjct: 491 ADLSLPEGGFSHDWYIEPGRHEAFLACLER--EGHVEDFVSEVR-RHAGGERIWVSETAW 547 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + ++ G + + G D TE+K++ I A D LTG+PNR+ F + L +D + Sbjct: 548 VVRDAAGRPIWFEGTVADATERKRAQALIEHMARHDALTGLPNRRLFQETLAREIDGARR 607 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D V+ D+D++K +ND G GD +L + R+ L+ D++ARL G+ F II Sbjct: 608 DGG-SVVVLCCDLDRFKAVNDTFGHPAGDALLRVIAGRLRATLREGDVVARLGGDEFAII 666 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L S +IA FA + ++ P++L R TV SIG A W ++ + KNA++A Sbjct: 667 LPSRGKQRRIAAFARRLIQAAGRPVDLGGRATTVGVSIGVAVWPKHGDSADTLFKNADIA 726 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N + + ++ ++ ++ + L Y PI L D G Sbjct: 727 LYRAKDSGRNTFRFYESGMALAVVTRNLLEIEMRESIRSGGFALHYQPIFALADGAPQGF 786 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP G IS F+ +AEE +I + + L R+ SW + + + Sbjct: 787 EALLRWNHPLRGPISPGAFIPLAEESGLITQLGAWALHEACREAASWP-----GDLRVAV 841 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++ L + + ++ + R++L +ESV+M + + L RLR +G+ + Sbjct: 842 NVSAVQFRKTGLEQSVMRALAASGLPAGRLELEITESVLMQDSDAVIGSLHRLRAMGVRI 901 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S LSYL PFD +K + + + A++R+++ + + + I A+ Sbjct: 902 ALDDFGTGYSSLSYLCRFPFDKIKIDRAFIRDIDEPVAAAVVRAVVGLGERLGMAITAEG 961 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E + ++ R GC +Q + PL + L+ R Sbjct: 962 VETEEQLVQVRRKGCTEVQGFLLGRPLPAAEAMTLVAGR 1000 Score = 79.2 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 7/146 (4%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 H+L + + + ++A + W D + + IA I G + P Sbjct: 181 HLLEWEARQRALEAA---HAMAEQIAAFGHWRIDAGTRTIAWSDGIARIFGRNAERATLP 237 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYR----RGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + + H +DR+ +D + R G ++ R+ D + + + + Sbjct: 238 LETHIGFYHPDDRERVWAAMDEALAGRSRTLGGGYEHRSRILRPDGEIRVVAVHGIGEHD 297 Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530 G ++ G+ D+T +S + + Sbjct: 298 EAGRLVSIFGVCLDVTGMARSEQRLR 323 >gi|239995544|ref|ZP_04716068.1| sensory box protein [Alteromonas macleodii ATCC 27126] Length = 1517 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 131/579 (22%), Positives = 263/579 (45%), Gaps = 16/579 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + L + + ++ + V+ + ++ G Sbjct: 942 VRMTGTLKNIHHLKEAEEQLNLFKRSIENISEGVFITNTQFKFISVNNAYCGYTGETRDQ 1001 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 ++ +++ + F + + + G E + + + M + I + + Sbjct: 1002 ALASYMHF--HLYPD---AFTEEIKKTLKAK-GNWSGEVESVRVNGERYEMELNIDAVHD 1055 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G I ++G+ +DIT +K + + +L A D LT +PNR F + Sbjct: 1056 DDGKISHFVGVFSDITSRKSTEKELLKLANTDPLTELPNRSFF-----QASHQNLVRKGA 1110 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + T++ +D+D +KKIND LG GD ++ + +R+ + RL G+ F +++ Sbjct: 1111 QHTLLCLDMDNFKKINDSLGHQTGDILIKQIAKRLQRITGKSATCYRLGGDEFSVLMEDN 1170 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + +A + +++ P + ++E + ASIG A + + EMLKNA+ AMY A Sbjct: 1171 ADIHTVTHYAQNLLDTLSRPFIINKQEFVLGASIGIAFFPDDGTSPQEMLKNADTAMYFA 1230 Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K+ GGN + F ++ ++ I+ + +++ + Y P + + ++V +EAL+ Sbjct: 1231 KNNGGNSYQFFSGEMNQNAVRQLQIENLIRQGIKDDLFTVYYQPKVDIASGKLVSMEALV 1290 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +++HP+ G +S +F+ +AE+ I I +L + D W +Q + +NI++ Sbjct: 1291 RFEHPQKGIVSPGQFIPLAEQTGQIIEIGEQVLRKACADTKRWVNQGLFSG-RVAVNISA 1349 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K +L + + ++S SP ++ +E +M +PE ++ RLR+ GI L LDD Sbjct: 1350 KQFELPDLDDRINKILSDIGLSPLHLECEITEGTLMESPENGLQMMTRLRERGIHLALDD 1409 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL P +T+K + + + + + +II +A N+ ++A+ + Sbjct: 1410 FGTGYSSLAYLKRFPLNTLKIDKAFIDDIAKSNVDRHMAAAIINIAHNLGLKVVAEGVEE 1469 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 E + L R C+ +Q + PL KLL E L Sbjct: 1470 EAQLDILRRYDCEMLQGFLYSRPLNAERFEKLLTENQKL 1508 Score = 106 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 4/173 (2%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGD 416 + ++ + ++ F I +Q I ER L + SGD Sbjct: 790 LQIIIERPPWLHTVALVFYCLIAFAIFAFIVRQYQIRKANQLAIKESEERLKLTLWSSGD 849 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 +WDWD+ R +V T L + IH ND + +T L + Sbjct: 850 ELWDWDVYRGQVYRANTWGT-LDFPQDDIRTTGAYDAN-IHPNDVNRVKTALRDHLEGNS 907 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + +R + NQ+ W++ R + + + N +R G +I K++ E Sbjct: 908 DFYELAYRAKTFKNQWIWILDRGKVVERDHNAQPVRMTGTLKNIHHLKEAEEQ 960 >gi|49478974|ref|YP_039341.1| hypothetical protein BT9727_5032 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330530|gb|AAT61176.1| conserved hypothetical protein, PAS/PAC domain, EAL domain, GGDEF domain [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 892 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 181/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%) Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 K L+ +++ + I L + + ++ A+ + ++ YI + Sbjct: 54 AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287 GF K + S L + I + I F + L + W +I Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173 Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 S + I L+ Y + I T+ + Y F + G+K LI + Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384 + I + + K + ++ V + +LIG Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293 Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417 + +L + + +R D Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 353 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + ++ + + L +I D D + L + Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQ--LTKEGS 409 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 E R + + ++++ I + P N +++ GIA DIT + + + AF D Sbjct: 410 PQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ F L IL+ + N VM +D+D++KKIND LG +GD +L+ + + Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAK 527 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ D++AR G+ F I+L + A A + + P + + E+++T S Sbjct: 528 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG A + +E++KNA++AMY AK G N F + ++ +L A+ Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE I + ++L Sbjct: 648 QQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W +Q + + +N++ +L + ++ +T P + + +ES Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 + + + L +L+ +GI +++DDFGT S L+YL P +T+K + G + Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ SII ++K + +IA+ + E K L CD+IQ ++ P+ + +LL Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886 Query: 954 KER 956 ++ Sbjct: 887 HKK 889 >gi|53805211|ref|YP_113066.1| sensory box protein [Methylococcus capsulatus str. Bath] gi|53758972|gb|AAU93263.1| sensory box protein [Methylococcus capsulatus str. Bath] Length = 1214 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 147/571 (25%), Positives = 279/571 (48%), Gaps = 17/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455 + R + + + + + + I G + G R + Sbjct: 648 RREAVEAELRLAATTFETDEAILIAGADGRILRVNAAFSRITGYRQEDVVGRNPRLFKSG 707 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 +H + +R + S + GR Q E R + + + I + ++NGDI Y+ I Sbjct: 708 LH--GAEFYREVWRSL--EQTGRWQGEIWNRRKNGEVYPERKTITAVRSANGDITHYVAI 763 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 ++DI+E K++ E I A+ D+LTG+PNR +RLT + +A + ++ +D+D Sbjct: 764 SSDISELKRTEEKIRQLAYYDSLTGLPNRSLIFERLTQQMK-AARREGTYGALLFMDLDY 822 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKI 630 +K +ND LG +GD +LV + R+ L+ + ARL G+ F ++L + + Sbjct: 823 FKTLNDSLGHHMGDRLLVQVAERLKNCLEDEEAAARLGGDEFVVLLAPAKPSASVAAGQA 882 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A +R+ ++ P L + ++ SIG A + T+ ++LK A+ AMY AK+ G + Sbjct: 883 IVHARRVRELLSAPFQLDDYVHYISVSIGIALFPDGANTAEDVLKQADTAMYVAKNEGRD 942 Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 V + + R+ +++ L A+ N E + Y P + L D +VG EALI+W HP+ Sbjct: 943 GVRFYESAMEAVVRGRLELEKALRKALANDEFEVYYQPQM-LGDGRVVGAEALIRWFHPE 1001 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G IS +F+ + E+ MI + +L R + R + P + +N++ + + + Sbjct: 1002 RGAISPDQFIPVCEQNGMILRVGAIVLRRACACLAEIRARGLALP-KLSVNVSPRQFMRS 1060 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L ++ + SP+ + L +E V++ + E + +GRL+ +G+S ++DDFGT S Sbjct: 1061 DLMTQLEQFCLENGVSPTDLCLELTEGVLLNHTELAVAQIGRLKNLGVSFSIDDFGTGYS 1120 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL ++P D +K + + + AI+ +I+ MA+++ +IA+ + ++ Sbjct: 1121 SLAYLKHLPLDDLKIASAFVRDLEQDSSDAAIVETIVSMARHLGLDVIAEGVETRTQVEI 1180 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L R GC Q ++ A PL + ++ + ER Sbjct: 1181 LERYGCHRFQGNYFARPLPKDDFIRFVAERQ 1211 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 4/154 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + +Q V + + ER L V V +WD+ P I G Sbjct: 513 VLQGTLQDVTERWEAERALRQSEERLRLHVEHLPLAVIEWDLDFIVSRWNPAAERIFGYG 572 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + M G + D + V G + AD + P Sbjct: 573 ADRMIGRSAG---ILFPEDVLEQAEAIWREVSGGSGN-RVVTANVTADGRTIRCEWYNTP 628 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 ++ +G ++ + +DIT ++ + A Sbjct: 629 LTTPDGTVIGVASLVDDITRREAVEAELRLAATT 662 Score = 69.6 bits (169), Expect = 3e-09, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 29/227 (12%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412 L + I + D + V + + +++ T+ V + + ER+ LA Sbjct: 353 ALGLEIDAAVRRDRVAAYRVVAIAIALLIAMGTLGFEVSRQRLWLSSRIAKAERRRLAEA 412 Query: 413 G--SGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILD 469 + W +D DR+T + + I GL G + + + DR+ L Sbjct: 413 QRLARVGSWVYDPATDRMTWSEETYRIFGLPFDGEVPHRYQEFAALFVPEDRELIEAALR 472 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRYIGIANDITEQKKSLE 527 G ++ VR AD + ++ +G +L+ G D+TE+ ++ E Sbjct: 473 GGRDDLLG-VERPLCVRRADGAVRQVNFKVELQGRRGDSGPVLQ--GTLQDVTERWEA-E 528 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 L + +RL + ++L V+ D+D Sbjct: 529 RALRQS--------------EERLRLHV------EHLPLAVIEWDLD 555 >gi|27380653|ref|NP_772182.1| hypothetical protein bll5542 [Bradyrhizobium japonicum USDA 110] gi|27353818|dbj|BAC50807.1| bll5542 [Bradyrhizobium japonicum USDA 110] Length = 835 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 144/571 (25%), Positives = 260/571 (45%), Gaps = 21/571 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457 + L + +W +D + G + + +R L I Sbjct: 279 ALKRRDASFRLLFDNNPMPMWVFDAETKQFLGVNDAAVQHYGYSRAAF---LRMKLHEIW 335 Query: 458 IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D D+ LD +R AD ++ R ++ + D Y+ Sbjct: 336 PEDEWDSHAEALDRV--GDTYHSSRNWRHLRADGSEIEVLTFGRRVAFDDRD--GYLVAV 391 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE++K+ I A D LT +PNR+ F RL LD + R V+ ID+D + Sbjct: 392 VDITERRKAEARIAHMAHHDGLTDLPNREYFQQRLKQALDQA---GGKRVGVLYIDLDLF 448 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND G GD +L + R+ ++ ++ ARL G+ F +IL ++ + + + A Sbjct: 449 KNINDSFGHPAGDRLLKEVAERLTTAVRGANLAARLGGDEFAVILAADVSPNEASACAAL 508 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P + +E+ + ASIG A +TS E+++NA++A+Y AK GG F Sbjct: 509 LIDMLRAPYEIDGQEMVIGASIGIALSPGDGVTSEELMRNADMALYRAKSDGGGVHHFFE 568 Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R ++ DL A N E L Y P++ + + I G E+L++W HP G IS Sbjct: 569 REMDLQAQKRRDMELDLRRAFANGEFELHYQPLVSIASDRISGFESLLRWRHPDKGMISP 628 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +EF+ +AE++ +I + ++L + + W + + +N++ L + + Sbjct: 629 AEFIPVAEDIGLITQLGEWVLREACAEAVKWP-----VDVKVAVNLSPAQFRSRNLVQVV 683 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++++ SP R++L +ES+ + + + +L +LR+ G+ +++DDFGT S LSYL Sbjct: 684 ISALAQSGLSPKRLELEITESIFLAETDANLAILHQLREFGVGISMDDFGTGYSSLSYLR 743 Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFD +K + S + +AI+R+I + +++ T A+ + E + L GC Sbjct: 744 SFPFDKIKIDRSFVKDLAQRPDCVAIVRAISGLGRSLNITTTAEGVETEDQLDWLRAEGC 803 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + +Q ++ I KLL + Sbjct: 804 NEVQGFLFSAARPAAEIEKLLADFGQRASRA 834 >gi|163852480|ref|YP_001640523.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163664085|gb|ABY31452.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 1003 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 146/579 (25%), Positives = 256/579 (44%), Gaps = 14/579 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A+ + S + V+ + V +A + G Sbjct: 431 HICTFTDLTASRQSEAALRSAEADYQSLFQNAVIGVYRARLDGGIVQANRALARLHGYGD 490 Query: 443 GSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + P + YI + F L+ E R R A + W+ Sbjct: 491 ADLSLPEGGFSHDWYIEPGRHEAFLACLER--EGHVEDFVSEVR-RHAGGERIWVSETAW 547 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + ++ G + + G D TE+K++ I A D LTG+PNR+ F + L +D + Sbjct: 548 VVRDAAGRPIWFEGTVADATERKRAQALIEHMARHDALTGLPNRRLFQETLAREIDGARR 607 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D V+ D+D++K +ND G GD +L + R+ L+ D++ARL G+ F II Sbjct: 608 DGG-SVVVLCCDLDRFKAVNDTFGHPAGDALLRVIAGRLRATLREGDVVARLGGDEFAII 666 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L S +IA FA + ++ P++L R TV SIG A W ++ + KNA++A Sbjct: 667 LPSRGKQRRIAAFARRLIQAAGRPVDLGGRATTVGVSIGVAVWPKHGDSADTLFKNADIA 726 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N + + ++ ++ ++ + L Y PI L D G Sbjct: 727 LYRAKDSGRNTFRFYESGMALAVVTRNLLEIEMRESIRSGGFALHYQPIFALADGAPQGF 786 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP G IS F+ +AEE +I + + L R+ SW + + + Sbjct: 787 EALLRWNHPLRGPISPGAFIPLAEESGLITQLGAWALHEACREAASWP-----GDLRVAV 841 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++ L + + ++ + R++L +ESV+M + + L RLR +G+ + Sbjct: 842 NVSAVQFRKTGLEQSVMRALAASGLPAGRLELEITESVLMQDSDAVIGSLHRLRAMGVRI 901 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S LSYL PFD +K + + + A++R+++ + + + I A+ Sbjct: 902 ALDDFGTGYSSLSYLCRFPFDKIKIDRAFIRDIDEPVAAAVVRAVVGLGERLGMAITAEG 961 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E + ++ R GC +Q + PL + L+ R Sbjct: 962 VETEEQLVQVRRKGCTEVQGFLLGRPLPAAEAMTLVAGR 1000 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 7/146 (4%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 H+L + + + ++A + W D + + IA I G + P Sbjct: 181 HLLEWEARQRALEAA---HAMAEQIAAFGHWRIDAATRTIAWSDGIARIFGRNAERATLP 237 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYR----RGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + + H +DR+ +D + R G ++ R+ D + + + + Sbjct: 238 LETHIGFYHPDDRERVWAAMDEALAGRSRTLGGGYEHRSRILRPDGEIRVVAVHGIGEHD 297 Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530 G ++ G+ D+T +S + + Sbjct: 298 EAGRLVSIFGVCLDVTGMARSEQRLR 323 >gi|299068767|emb|CBJ40007.1| putative modulator of Rnase II stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum CMR15] Length = 625 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 148/567 (26%), Positives = 259/567 (45%), Gaps = 23/567 (4%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHIND--RDNFR 465 V + + D R P A +LG+ ++ G I D + Sbjct: 48 MVNALTEGLLVCDGQRRITYANPSAARLLGVPLDALVGVRLPEVVASAIDEFDTPIRDVD 107 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513 + + +L F +R D + W+ P+ G+ + + Sbjct: 108 WPDSEVLAEGQPQLNQIFGMRCLDGRTVWVSTNWTPLYAEAGEPVTAAPAARHAQPYAVL 167 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DIT+ +++ + I A D LTG+ NR + DRL L L+ + R +VM +D+ Sbjct: 168 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-RSRVSVMFLDL 226 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG GD +L + R+ + D +ARL G+ F ++L S + Sbjct: 227 DRFKNVNDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGVGT-RRV 285 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + +I P ++ +E+ + SIG A +L+ A+ AMY AK RG N+ + Sbjct: 286 AERILAAIGAPFHIDGQELFLGVSIGIAVAPHDGDDPHTLLRKADAAMYLAKERGRNNFQ 345 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 +F S R I+ L A + +E Y Y P + + IVG+EALI+W+ +G Sbjct: 346 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSTDFGR 405 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + +F+ AEE +I I+ ++L + WR +P + + IN++ + +L Sbjct: 406 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 464 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ ++ + ++L +E +++ + LL LR +G+SL LDDFGT S LS Sbjct: 465 GMVRGALTSSGLPGEAVELEMTEGILIRDDPSLHTLLTELRALGVSLALDDFGTGYSSLS 524 Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + S + +R AI R+II MA+ + +A+ + ++ L+ Sbjct: 525 YLNRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLSE 584 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD Q + PL ++ L++E Sbjct: 585 IGCDEYQGYLLTRPLEPAAMHDLVREH 611 >gi|333022992|ref|ZP_08451056.1| hypothetical protein STTU_0498 [Streptomyces sp. Tu6071] gi|332742844|gb|EGJ73285.1| hypothetical protein STTU_0498 [Streptomyces sp. Tu6071] Length = 600 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 141/581 (24%), Positives = 252/581 (43%), Gaps = 17/581 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A + + R G+ + D+ V +A + G Sbjct: 18 EAISRAALGARAAVERALHVSEARFRAVFEGAALGISIADMDGVIVEANDALAGMFGGLV 77 Query: 443 GSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 GS+ G +R W H +D + + V R Q E D W + + Sbjct: 78 GSLRGTNVREWA---HPDDSPTVWRLYEELVKGTREYFQAEKPFYRHDGTVLWTNLTVSL 134 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + G L + + D TE++ + A D LTG+PNR F +RL L Sbjct: 135 LRDDQGRPLYQLALLEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLDKAL---QAG 191 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGII 620 +N R + +D+D +K +ND LG GD +LV + R+ +I+AR+ G+ F + Sbjct: 192 ENNRFGLCYLDLDGFKTVNDSLGHDAGDRLLVEVADRLQGCAGGAGEIVARIGGDEFVAL 251 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAEL 679 ++ + A M +++A P+ + RE+TV SIG +E+L++A++ Sbjct: 252 TTGPRAREEVHELAGRMMQALATPVRVDGRELTVRGSIGIVEGPGGGKRGPAEVLRSADI 311 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 MY AK GGN E + + L A+E E ++ Y P++ L D + G Sbjct: 312 TMYRAKAAGGNRYEVADPEADARAITRHGLTTALPAALERGEFFIEYQPLVDLGDGTVHG 371 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFI 796 EAL++W HP+ G I F+ +AE +I + ++L+ AR W+++ P P+ + Sbjct: 372 AEALVRWSHPQHGTIGPDRFIPLAEHTGLIVPLGRWVLDESARQARLWQEERGGPAPLRV 431 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L L ++ +T P + L +ES ++G + L RL ++G+ Sbjct: 432 NVNLSPCQLQHPRLVADTVEILERTGLPPGALCLEVTESALIGADDDLLKPLRRLAEMGV 491 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911 + LDDFGT S L+ L +P +K + + G + I+ I+ +A +++ Sbjct: 492 DIALDDFGTGYSNLANLRRLPVSVLKLDRAFTRGMQQFPADPVDLKIVEGIVALAHSLDL 551 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + + +L +GCD Q + A P + +L Sbjct: 552 AVTVEGVETSAQADQLRELGCDTAQGWYYARPGPAARVREL 592 >gi|229105940|ref|ZP_04236564.1| Sensory box protein [Bacillus cereus Rock3-28] gi|228677514|gb|EEL31767.1| Sensory box protein [Bacillus cereus Rock3-28] Length = 881 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 185/819 (22%), Positives = 336/819 (41%), Gaps = 70/819 (8%) Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260 + I L + + +L A+ + ++ YI + GF K + S L + I Sbjct: 67 AMEITLFLHSLSICDQVLFSYEALPFFIIQYILLFSGFSIKFIKHYSIRGLAQFSFDSIF 126 Query: 261 LSSSLIIFLFMY-LHWNRWH-AKVGYITFSGIACIAILFCMS--------FYYPMVTASI 310 + I F + L + +H G L + Y + I Sbjct: 127 IVIMNIYFTLTFILDLSSFHTLTKDTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLI 186 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN------ 364 T+ + Y F + G+K LI ++ I + + K + + Sbjct: 187 IGFTIILVYGYIQLFQLNTGIKTSAEFSYLIHTASILLIGLSSILYILDKPMQHETKTKY 246 Query: 365 ------DIIQPALVGGLVLIVILI------------------------------------ 382 I P + I+I Sbjct: 247 YRFDYVRFILPYFSIIMTFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNKVLIDT 306 Query: 383 -GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q + + +R D V+ ++ + ++ Sbjct: 307 YEQLTTQLEDEVEEGASALSKSEQRYKSLFEDHPDAVFSLNMHGIFQQSNTACESLF--T 364 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + L +I D D + L R L E R + + ++++ I + P Sbjct: 365 AYYCEVASHSLLHFIDPKDHDLLKRALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 422 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N +++ GIA DIT + + + AF D LTG+PNR+ F L TIL+ + T Sbjct: 423 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTS 481 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 N VM +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L Sbjct: 482 AN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 540 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A A + + P + + E++VT SIG A + +E++KNA++AM Sbjct: 541 PDMYSEKSAAFIAEQILTILNKPFFIKDEELSVTPSIGIAMYPDYGNDVTELMKNADMAM 600 Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F +++ ++ +L A++ +E +L Y P + ++I+G E Sbjct: 601 YRAKANGKNRFVFFSKEISIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 660 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HPK G +S ++F+ +AEE I + ++L + W +Q + + +N Sbjct: 661 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACSEAKRWHNQ-GFSHLKVGVN 719 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ +L + ++ +T P + + +ES+ + + L +L+ +GI ++ Sbjct: 720 LSVVQFNHTDLIPTISKVLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 779 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P +T+K + G + AI+ SII ++K + +IA+ Sbjct: 780 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEG 839 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E K L CD+IQ ++ P+ + LL ++ Sbjct: 840 VETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWMLLHKK 878 >gi|126661089|ref|ZP_01732171.1| hypothetical protein CY0110_06459 [Cyanothece sp. CCY0110] gi|126617633|gb|EAZ88420.1| hypothetical protein CY0110_06459 [Cyanothece sp. CCY0110] Length = 837 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 148/568 (26%), Positives = 285/568 (50%), Gaps = 6/568 (1%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + E A++ + + + + + G + Sbjct: 264 AKIQEKIKIETELKQSKESFQKAIINAPLPIMIHAEDGEILQINDIFTELTGYTHDEI-P 322 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 I WL + ++ R +++ + EF + +D + + P+ + Sbjct: 323 TIDTWLEKAYGKRQNIIRPVINHLYDLETKIDEGEFVIDTSDEKQKILNFNSAPLEQLSD 382 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 I +A D+TE+KK+ E + NA D LT +PNR F+DRL ++ Sbjct: 383 GRRVVISMAIDVTERKKAEEKLRHNALHDTLTKLPNRLLFIDRLNQSIERIKRHPTYSFA 442 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D++K IND LG +GD VL+ + ++ ++ D +AR+ G+ F I+L + Sbjct: 443 VLFIDLDRFKLINDSLGHIIGDRVLIQIATKLTSCVRSLDTVARIGGDEFIILLNDLESK 502 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 +K A + +++ +PI + +R I ++ASIG A + + + ++++NA+LAMY AK + Sbjct: 503 IKAIHIAERILETLKLPIIIEQRNIVISASIGIAFNSQNNEEADDIIRNADLAMYKAKEQ 562 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G F + + R+ ++ +L + +E E + Y PII L+D+++VG EAL++W Sbjct: 563 GKARYMIFDSVMYAQAQKRLELETNLRIGLEKQEFIVYYQPIISLVDKKLVGFEALVRWQ 622 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKD 804 HP+ G I +EF+ ++E+ +I I ++L R + +W+ + + + IN++ K Sbjct: 623 HPQKGLIPPNEFIPVSEDTKLIIPIGEWVLLESCRQLATWQQKYPECSMLKMSINLSIKQ 682 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L +N ++ ++ +T + + +KL +ES++M N R +L +++ +GI L++DDFG Sbjct: 683 LKNNTFVSKIEKILDQTGLNGNSLKLEITESILMENILELRDILRQIKSLGIELSIDDFG 742 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL +P D +K + S + +E I+ +II +A + ++IA+ I E Sbjct: 743 TGYSSLSYLHNLPVDNLKIDRSFVIEMNQSEGNYRIIETIITLAHQLGLSVIAEGIETEQ 802 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSIL 950 D++ L + C++ Q + PL +I Sbjct: 803 DLQTLRDLQCEFGQGYLFSKPLPSQAIE 830 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 76/251 (30%), Gaps = 6/251 (2%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLAS--IVLYYTYFIIYHGMKGYERAVLLI 341 I + F + T R A I++ + I ++G + L Sbjct: 1 MGATLIILVTSTYFIFDWNRMQKTEQYIRSKTAINFILIGLIFLNILCLLEGVRQIFLFN 60 Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 + + + + + + I ++ G ++ F + Q Q + Sbjct: 61 SNLDTLALTKLLNYNRVY-KASIYISSGLVIIGFSQLLKKSLFKLRQIANQLNKLEQSWY 119 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + R +++ +D R + ++L I D+ Sbjct: 120 QNQLRYQAITETQTELICRFDSDRILTFINDAYCHYFNRTKEELENS--SFLETIFNEDQ 177 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + +LDS + + +E+RV W R + + NG + + DIT Sbjct: 178 EKVCQVLDSINPHNL-IVTHEYRVMNHQEDIRWHQWINRGIFDENGQLTEIQAVGRDITL 236 Query: 522 QKKSLEGILCN 532 K++ + Sbjct: 237 LKEAEAKLQQL 247 >gi|187926918|ref|YP_001893263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] gi|241665247|ref|YP_002983606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] gi|187728672|gb|ACD29836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] gi|240867274|gb|ACS64934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] Length = 652 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 149/573 (26%), Positives = 256/573 (44%), Gaps = 35/573 (6%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI---------RNWLPYIHIND 460 V + + R P A +LGL + G + IH D Sbjct: 75 MVNALTEGILVCGADRCVSYANPSAARLLGLPLDELVGRPLPTVVHAAVDEFETSIHETD 134 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG------------- 507 + + + +L F + D + W+ P+ G Sbjct: 135 WPDL-----DVLAEGQPQLNQIFGLHCLDGRTVWVSSNWTPLYTEGGHSTTAAPGAARQG 189 Query: 508 -DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + DIT+ +++ + I A D LTG+ NR + DRL L L + R Sbjct: 190 ARPYSVLVSLVDITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALGRRN-RSRV 248 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 +VM +D+D++K +ND LG GD +L + R+ + D +ARL G+ F ++L S + Sbjct: 249 SVMFLDLDRFKNVNDTLGHQFGDMLLREVAARLQACAREADTVARLGGDEFVVMLESL-D 307 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A + +I P ++ +E+ + SIG A +L+ A+ AMY AK Sbjct: 308 AMGTRRVAERILSAIGAPFHIEGQELYLGVSIGIAVAPRDGDDPHTLLRKADAAMYLAKE 367 Query: 687 RGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 RG N+ ++F S R I+ L A + +E Y Y P + + IVG+EALI+W Sbjct: 368 RGRNNFQTFTSDLDDRVSRRFRIESGLRRASDRNEFYADYQPRVDVRSGRIVGVEALIRW 427 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 + +G + +F+ AEE +I I+ ++L + WR +P + + IN++ + Sbjct: 428 NSADFGRMMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQA 486 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 +L + ++ +S + ++L +E +++ + LL LR +G+SL LDDFG Sbjct: 487 FSSGKLSDMVRRALSASGLPGDAVELEMTEGILIRDDPSLHALLTELRAMGVSLALDDFG 546 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL P DT+K + S + +R AI R+II MA+ + +A+ + Sbjct: 547 TGYSSLSYLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMRTVAEGVESTG 606 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L +GCD Q + PL ++ L++E Sbjct: 607 QLDFLREVGCDEFQGYLLTRPLEPGAVQNLVRE 639 >gi|196039412|ref|ZP_03106717.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] gi|196029572|gb|EDX68174.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] Length = 909 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 165/870 (18%), Positives = 346/870 (39%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160 Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274 + + + + L L+ + + ++ + L+ Y + Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQVLLTPRLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMTTPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE I + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQIIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E + Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL +K L++ Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|46201915|ref|ZP_00054102.2| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 833 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 137/596 (22%), Positives = 270/596 (45%), Gaps = 10/596 (1%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 L + + F I H + ++ + + E + + D++ D + Sbjct: 237 LSLAAMELGGQRLFVAIGHDITLRKANEAELLNQREWLTTLINALPDLICFKDGKGRWLV 296 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQYEFRVRA 487 ++GLA G L + N ++ + D L YE + Sbjct: 297 ANQFYLDLVGLAGVDYVGRTGPELARLSHNFQEFLTSAKETDERAWKEGKALSYEKTMET 356 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + P+ +++G + + D+TE+K + I A D+LT +PNR F Sbjct: 357 PSRGTKVFDMLKIPLFHADGKRRGLVLVGRDVTERKMTAARIQRLAHHDSLTDLPNRVLF 416 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +RL L + + +M +D+DK+K +ND LG VGD +L ++ +R+ ++ D Sbjct: 417 QERLRQSLAQAKRS-GWKLALMFLDLDKFKDVNDTLGHHVGDLLLRAVAKRLIRCVRETD 475 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +ARL G+ F ++L + ++ + A + I+ P L E E+ + SIG + Sbjct: 476 TVARLGGDEFAVLLTNLDDLEGASRVAETIIAGISDPFGLEEHEVRTSTSIGITIYPDDS 535 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725 + ++LKNA+LAM+ +K G N+ + R ++ DL LA+ +L L Y Sbjct: 536 SDAEQLLKNADLAMFRSKAEGRNNYHFYVAQMDAEVRARKLVEHDLRLALGTEQLELHYQ 595 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P++ + IVG EAL++W+HP G + EF+ I E +I + ++L R + W Sbjct: 596 PLVEMSTRRIVGCEALLRWNHPTRGWMPPGEFIPIIERSDLIGPLGRWILHRACQQGREW 655 Query: 786 RDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 + P+ I +N++ + + ++ +T ++P +++L +E + M N + + Sbjct: 656 QKDGL-EPMKIAVNLSPAQFKQTQSIISMVADILDQTGFAPDQLQLEITEGIAMQNVDAT 714 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 +L LR +G+ +++DDFGT S L+YL P D +K + S + A++++I Sbjct: 715 IEVLQGLRAMGVLISIDDFGTGYSSLNYLKRFPVDKLKIDRSFVVDIGQHPDNAAVVQAI 774 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + + ++ T + + I + + L D Q + + + + +L++ + P Sbjct: 775 VNLGHSLRTRVNVEGIETQEQLDFLQAHKVDEAQGFYFSKAVPADQFAELVRTKSP 830 Score = 45.7 bits (107), Expect = 0.043, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 21/178 (11%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 + V + + Q L ++ V + D + + Sbjct: 121 AGLVQIFDVTSMASRETQLRQQALTMEALAENYRLSELHNRAIVDNTADAIVTFSEDGAI 180 Query: 428 VTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 T P I G A + G L + + F+ +R E Sbjct: 181 GTYNPSAERIFGYAPPEIVGKPIALLIPELVRPD----------PFLDHRT-----EVIG 225 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 + + + M G ++ I +DIT +K + +L ++ LT + N Sbjct: 226 VRKTRAHFPLELSLAAM--ELGGQRLFVAIGHDITLRKANEAELLNQ--REWLTTLIN 279 >gi|229142091|ref|ZP_04270616.1| Sensory box protein [Bacillus cereus BDRD-ST26] gi|228641380|gb|EEK97686.1| Sensory box protein [Bacillus cereus BDRD-ST26] Length = 735 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 145/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L R L E R + + ++++ I + P N +++ G Sbjct: 232 FIDPKDHDLLQKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHGVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + + ++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++++G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732 >gi|66044410|ref|YP_234251.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255117|gb|AAY36213.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 748 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 161/703 (22%), Positives = 300/703 (42%), Gaps = 62/703 (8%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 A L +S Y +V A +IY ++G+ + + Sbjct: 61 AWLRMVSSYGDVVLVGQDSPANAIQTNSPGTTLIYVAIRGFRHE----------LLGAML 110 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410 L + + + + AL V + + + ER L Sbjct: 111 LSNSDGAMVLSAAQRYALQAQAV------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164 Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 V+ + D + D+ V P I G + G L D Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC---EDTSRA 221 Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 I+ + + R ++ E D W+ + I P++N G ++ + DITE+K Sbjct: 222 TLDIIREALSHWR-PVEVELLNTRKDGSQFWVELSIVPVANEKGWFTHWVSVQRDITERK 280 Query: 524 ---------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + E + AF D LT + NR ++ LTT + Sbjct: 281 ESQQLAQRARLEWEEKLALQSRLEERERMSEELTYIAFHDELTSLFNRAYLMNELTTAFE 340 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + R TV+ +D+D +K +ND +G GD +L + R+ ++ D+LAR+ G+ Sbjct: 341 TRKSRYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQTCVRSNDVLARIGGDE 399 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L+ ++ A + + I + ++I ++ SIG S S E+L++ Sbjct: 400 FAILLMGKDQPETAVKMAERIVSQLNTAIQIEGQDIFISCSIGIVSAGESHTKPEELLRD 459 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY AK +G F S D +MI+ L A+E+ + + Y PI E Sbjct: 460 ADVAMYSAKKQGRGRWSIFNTSMREAAIDTLMIQNALRQALEDKDFLVFYQPIYSGNCEH 519 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG+EAL++W+H G IS F+ IAE+L +I + +++ + ++ +WR + + + Sbjct: 520 LVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHKACSEVQAWRKEFSHLDL 579 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ K+L + + +I+ T +++++ +ESV + P+ +L ++R++ Sbjct: 580 RLNVNVSGKELSHPGFVDRVTRIIASTGLPATQLQIEVTESVFLYQPDAIAEILRQIRQL 639 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912 G+ + LDDFGT S L Y+ P D VK + S ++ E+ AI+ SI+ + + + Sbjct: 640 GVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAIVSSILSLGRALNLD 699 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I A+ + L +MGC Y Q + P+ ++L ++K Sbjct: 700 ITAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742 >gi|229076562|ref|ZP_04209522.1| Sensory box protein [Bacillus cereus Rock4-18] gi|228706595|gb|EEL58808.1| Sensory box protein [Bacillus cereus Rock4-18] Length = 892 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 183/819 (22%), Positives = 333/819 (40%), Gaps = 70/819 (8%) Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260 + I L + + +L A+ + ++ YI + GF K + S L + I Sbjct: 78 AMEITLFLHSLSICDQVLFSYEALPFFIIQYILLFSGFAIKFIKHYSIRGLAQFSFDSIF 137 Query: 261 LSSSLIIFLFMY-LHWNRWH-AKVGYITFSGIACIAILFCMS--------FYYPMVTASI 310 + I F + L + +H G L + Y + I Sbjct: 138 IVIMNIYFTLTFILDLSSFHTLTKDTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLI 197 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 T+ + Y F + G+K LI ++ I + + K + ++ Sbjct: 198 IGFTIILVYGYIQLFQLNTGIKTSAEFSYLIHTASILLIGLSSILYILDKPMQHETKTKY 257 Query: 371 LVGGLVLIVI-------------------------------------------------L 381 V ++ Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNKVLIDT 317 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q + + +R D V+ ++ + ++ Sbjct: 318 YEQLTTQLEDEVEEGASALSKSEQRYKSLFEDHPDAVFSLNMHGVFQQSNTACESLF--T 375 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + L +I D D + L R L E R + + ++++ I + P Sbjct: 376 AYYCEVASYSLLHFIDPKDHDLLKRALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N +++ GIA DIT + + + AF D LTG+PNR+ F L TIL+ + T Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTS 492 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 N VM +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L Sbjct: 493 AN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A A + + P + + E++VT SIG A + +E++KNA+LAM Sbjct: 552 PDMYSEKSAAFIAEQILTILNKPFFIKDEELSVTPSIGIAMYPDYGTDVTELMKNADLAM 611 Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F +++ ++ +L A++ +E +L Y P + ++I+G E Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIEFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HPK G +S ++F+ +AEE I + ++L + W +Q + + +N Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACSEAKRWHNQ-GFSHLKVGVN 730 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ +L + ++ +T P + + +ES+ + + L +L+ +GI ++ Sbjct: 731 LSVVQFNHTDLIPTISKVLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P +T+K + G + AI+ SII ++K + +IA+ Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEG 850 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E K L CD+IQ + P+ + LL ++ Sbjct: 851 VETEEQWKFLYEQNCDHIQGFFFSKPVSSKDVWMLLHKK 889 >gi|78484511|ref|YP_390436.1| response regulator receiver/GGDEF/EAL domain-containing protein [Thiomicrospira crunogena XCL-2] gi|78362797|gb|ABB40762.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] Length = 697 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 145/601 (24%), Positives = 276/601 (45%), Gaps = 8/601 (1%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 +D+ A I + +++ + + + + + A + Sbjct: 99 MGSIDHAFTSGATDFITKPINWSLLSQRVKYAINSSLIEDQLRTSQSQLMYAQKLAKLGY 158 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W+WD D+VT T + G+ + + I D + + Sbjct: 159 WEWDTKADQVTGTGSAFELFGI-PNQADVTLEQFFSNIIPKDLPLIQQAIADASQGYND- 216 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 +Q FRV DN + + +GDI R G A DI+ K+ I + D L Sbjct: 217 IQVSFRVLHHDNSLSHVDCLGEVSFDEHGDISRITGSAQDISRLHKAETLIDYQSSHDKL 276 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 T + NR F L + + + +++DID++KKIND LG GD +L ++ +R Sbjct: 277 TDLANRSFFNKNLANFIKEA--NPKKYSATVILDIDRFKKINDNLGQENGDALLRTVAQR 334 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + ++ + D +ARL + F I++ + ++ ++ + I+ N+ ++E+ +T SI Sbjct: 335 LKKVTREDDFVARLGSDEFAILIKNTEDAQELNLSLSRIFHDISKAFNVKDQELFITFSI 394 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVE 716 G + +SE++ +A +A AK +GGN ++ +++ +++M++ DL A++ Sbjct: 395 GISIINQDGDQASELIAHANIARSQAKLKGGNQFLFYQAEMNAESKEQLMLENDLRKALD 454 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 +E+ + Y P I + G EAL++W HP G IS F+ +AE MI I F+LE Sbjct: 455 RNEIEVYYQPQIDGHSLKPYGAEALVRWKHPTEGIISPGIFIPMAESNGMIVDIGRFVLE 514 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 ++ W + + I +N++ + + L + +Q ++ T + L +ES+ Sbjct: 515 NAIKEAEKWHAEGFDE-MRIAVNLSGRQFSSSNLIKEVQEVLQNTTLPAKYLDLEITESL 573 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKR 895 M N + + +L L+ +G+SL++DDFGT S L+YL P D +K + S + +++ Sbjct: 574 AMSNADHNISILKGLKAMGVSLSIDDFGTGYSSLAYLHSFPIDAIKIDRSFIDNLESQEG 633 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 AI+R+I+ MA ++ ++A+ I E + L CD Q P+ + LK Sbjct: 634 QAIVRTILAMADSLSLKVVAEGIEEEFHVTFLQNKNCDIFQGFMFGKPMPAGDFQQYLKS 693 Query: 956 R 956 + Sbjct: 694 Q 694 >gi|49481140|ref|YP_039292.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332696|gb|AAT63342.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 909 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 170/872 (19%), Positives = 347/872 (39%), Gaps = 38/872 (4%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F + + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTIVCVGTLSYFVGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFL-----SKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272 T + +V L Y D FL L + L + ++ + Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLIIGINLLFKPLSLLPKKVGALLGSALLLYATTDAIYAF 220 Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332 + + T + + + ++ + + + Sbjct: 221 --IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYI 278 Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHV 390 ++ I + + M + + +++ L+ + Q Sbjct: 279 SVVMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIE 338 Query: 391 LATGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 L T + ++ + + D ++ D+ + + T+LG + + Sbjct: 339 LRTEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLN 398 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + I+ D + + E R + +++ + P+ + Sbjct: 399 QP--YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD- 453 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 I + DITE K+ E I A++D LT + NR++F + + S Sbjct: 454 HISGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFA 512 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 VM +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 513 VMFLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKR 572 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+R Sbjct: 573 PDVKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNR 632 Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W Sbjct: 633 GKNGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWK 692 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 693 HPLLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEF 751 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 752 QQDHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGT 811 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E Sbjct: 812 GYSSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQ 871 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +K L R C Y+Q + + PL +K L++ Sbjct: 872 LKFLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|78222177|ref|YP_383924.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens GS-15] gi|78193432|gb|ABB31199.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens GS-15] Length = 633 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 123/448 (27%), Positives = 228/448 (50%), Gaps = 7/448 (1%) Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + ++ E+ ++ E I A+ D+LTG+PNR+ F DRL L L+ VM Sbjct: 174 HAAMLEEEVAERSRAEERIRQMAYYDSLTGLPNRRLFNDRLRQSLALAQRHKR-PLAVMF 232 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG AVGD +L+++ +R+ + D +AR G+ F I L + ++ Sbjct: 233 LDLDRFKLINDTLGHAVGDRLLMAVAKRLRNCCRREGDTVARQGGDEFIINLSAISDVKD 292 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A + P + E+ +T SIG + + + ++KNA++AMY AK +G Sbjct: 293 AFTVAQKIIDVFRTPFVIDGYELFITTSIGISVYPHDGRSGDALVKNADVAMYRAKEQGR 352 Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N+ + F +R+ ++ D+ A+E E L Y P + + +I +EAL++W HP Sbjct: 353 NNCQLFAPEMNARAFERLSLENDMRRALERDEFVLHYQPKVNVEHGQIACMEALVRWQHP 412 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G + S F+ +AEE +I + ++L + +W+D P + + +N++ + L Sbjct: 413 SMGLVPPSRFIPLAEETGLIVPLGEWVLRTACQQNRAWQDA-GYPTMQVAVNLSPRQLRQ 471 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 +L E + ++++T +P + + +ES++M + E + RL ++G+ +++DDFGT Sbjct: 472 GDLSETVARVLAETGLAPGWLVIEVTESILMDDAEETIRTFRRLDRMGVRISIDDFGTGY 531 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L YL P T+K + S + AI ++I MAK + ++A+ + ++ Sbjct: 532 SSLHYLKKFPVHTLKIDRSFVREIASNPDDEAIAGAVISMAKGLNLGVVAEGVETVEQME 591 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 L + C Y+Q + P +L Sbjct: 592 VLRALNCRYMQGFLFSEPAPAEQFTPVL 619 >gi|254294194|ref|YP_003060217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hirschia baltica ATCC 49814] gi|254042725|gb|ACT59520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hirschia baltica ATCC 49814] Length = 785 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 144/737 (19%), Positives = 306/737 (41%), Gaps = 26/737 (3%) Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRW 278 + + + + + L + + + + L + Sbjct: 29 YRAFLGMAPVAAFGLTATGAFLSILHHNSSLGPIMFSWAYSAGVLAYVMIRSWQLSIQQP 88 Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 S + ++ A + ++ L + M + AV Sbjct: 89 DKNFHTSQKFKKIGFWAAGIGSVW-GLLIAVLIMHDQTNLALVGAVAVGMLSMGSFVLAV 147 Query: 339 LLI--PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 L + ++L + G A++ + +I P + +V++ +T VL Sbjct: 148 LPVASLVFMLGILAGFGAGAALSGDVAFLVIVPLFLIFMVVMQRYAAWTFRNFVLQRLDR 207 Query: 397 SQGIFSDGERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + E SL + S D +WD D + A + + + + Sbjct: 208 N-AVSESKEVISLLLHDFESQSSDWLWDTDENMLLGRVSQRFAEAVKRPAEVL--NSECF 264 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 L + + ++ + + + +R R+ + + W I P N G+ Y Sbjct: 265 LHFFEEDSKEQLQELFLNQRSFR--DFVVPIRI---EGELRWWSISASPKRNCEGEFTGY 319 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 G+ +D+T+++ + + I A D LTG+ NR +F L ++ T + ID Sbjct: 320 RGVCSDVTQERTAEKKIAYMAHFDALTGVHNRANFSTELEKAVERMHTQGK-PFALHCID 378 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K +ND +G GD +L + R+ + DI+ RL G+ F ++ + N++ + Sbjct: 379 LDNFKTVNDTMGHPAGDSLLKIVAHRLSMSISDGDIVGRLGGDEFMVLQMGCNDAEEAML 438 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 + + ++ P++L+ + V+ S+G + TS E++++A+LA+Y AK G Sbjct: 439 TSDMITDALLEPVSLMGSVLPVSGSVGTSFAPRDGETSKEIMQHADLALYAAKQDGRGCN 498 Query: 693 ESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F + ++ L A++ +EL + Y P++ + I G E+L++W + Sbjct: 499 RMFEPKMDLDAKRRTQLEIGLRRALQENELEMHYQPLMDVRSGTIKGYESLLRWRRGEND 558 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +EF+ IAE+ +I + +++ + +W + I + IN++ + + L Sbjct: 559 VLLPTEFIEIAEDTGLIVPLGEWIIRTAIAEAATWPE-----NISVAINLSPTQMKNPSL 613 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ P+R++ +ESV++ E + L LR +G+ + LDDFGT S L Sbjct: 614 ISTVISALANNAMDPARVEFEITESVLLEESEVNIKTLHVLRDLGVKIALDDFGTGFSSL 673 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL PFD +K + +T + AI+R+++ +A+++ A+ I + + L Sbjct: 674 NYLRAFPFDKIKIDKCFVTEMETRDDCRAIIRAVMGLARDLGMKTTAEGIENQTHVDLLK 733 Query: 929 RMGCDYIQDSHVASPLG 945 GCDY+Q + P+ Sbjct: 734 AEGCDYMQGFLFSRPIP 750 >gi|172039622|ref|YP_001806123.1| hypothetical protein cce_4709 [Cyanothece sp. ATCC 51142] gi|171701076|gb|ACB54057.1| unknown [Cyanothece sp. ATCC 51142] Length = 661 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 159/576 (27%), Positives = 276/576 (47%), Gaps = 13/576 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIR 450 Q + + ER + D+VW + T+ G + Sbjct: 83 ELRLNEQALQLNQERLHSILGSIDDVVWSIVPQTSQILYLNHATETVYGRPIADFLDNLN 142 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W I+ +D+ + Y+ G E+R+ +++ HW+ +R R + + G+ + Sbjct: 143 LWQEIIYADDQQRVEES--QQLLYKTGIQDIEYRILWPNDEIHWIRVRSRLIKDDQGNPI 200 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 R G+ +ITE K+ + +L +A DNLTG+PNR +DR+ L D N R ++ Sbjct: 201 RIDGLTTEITEYKQIKDQLLHDALHDNLTGLPNRTLLMDRIEQGLKRCQRDKNRRFALLF 260 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D +K IND LG GD +L+ L+ R L+ D L+RL G+ F I+L + +N + Sbjct: 261 LDLDGFKLINDSLGHLTGDQLLIILSHRFSRCLRAEDTLSRLGGDEFVILLENLSNIDEA 320 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-----ITSSEMLKNAELAMYHAK 685 A + + PI L EI ++ SIG +E+L++A+ AMY AK Sbjct: 321 IAIADRIHNILKEPILLQNEEIFISVSIGIVLGGEQSVYNNLDQVAELLRDADTAMYRAK 380 Query: 686 HRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G + F+ S + +L A+E E + Y PII L + I G EAL++ Sbjct: 381 AKGPGTSKVFKPSMHTHVMKRLQVANELQRAIERQEFIVYYQPIISLDSDRIDGFEALVR 440 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIAS 802 W H + G I+ ++F+ IAEE I I+ ++L + W+ Q + + +N++S Sbjct: 441 WQHQEKGLIAPTDFIPIAEETEAILKIDQWVLRHACTQLGLWQQQFPNLGSLTMSVNLSS 500 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K L L E + ++++T S +K+ +ES VM + S +L ++++ I L LDD Sbjct: 501 KHLAHPSLIEVLDEILAETGLGGSSLKVEITESFVMEQSKTSLDILEQIKQRKIELCLDD 560 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL F+ +K + S + + R I+++I+ +A + ++A+ + Sbjct: 561 FGTGYSSLSYLDCFSFNILKIDRSFIKRLVAEQDRCEIIKAIVDLAITLNMQVVAEGVET 620 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + K L + C Y Q PL +I +LL+++ Sbjct: 621 NVQRKRLKALNCGYGQGYGFFPPLDSQNITRLLEQQ 656 >gi|300697792|ref|YP_003748453.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum CFBP2957] gi|299074516|emb|CBJ54067.1| putative signal transduction protein eal-ggdef domains [Ralstonia solanacearum CFBP2957] Length = 914 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 144/581 (24%), Positives = 270/581 (46%), Gaps = 13/581 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + +G+ ER LAV + V + + IL + G + G Sbjct: 329 AIQKDTTERGLAESEERYRLAVSHLNEGVLIQTLDGVVLAANASAERILRVRPGQLVGRN 388 Query: 450 R--NWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNS 505 R + + +D L S + + G L + + + W + I P+ Sbjct: 389 RFDMMQRVVDEHGKDVALDALPSKLVRQSGEPILGRIYGLLLKTGELIWARMNIIPIR-R 447 Query: 506 NGD--ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +G+ + DIT+ K++ + + A D LTG+ NR F+ L + ++ + D++ Sbjct: 448 HGEAAPTSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERA-RDES 506 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D+D++K +ND G A GD +L S R+ + + D++ARL G+ F I++ Sbjct: 507 RELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQ 566 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +IA A + ++ P + + + SIG A + I+ +++L++A+ AMY Sbjct: 567 RVEGKRIAQLAEHLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGTDLLRSADAAMYR 626 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + + + ++ L A +NSEL LVY P L IVG EAL Sbjct: 627 AKQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEAL 686 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+ K G +S EF+ +AEE +I I ++L R ++W + +N++ Sbjct: 687 LRWNSVKLGAVSPVEFIPVAEETGLIVPIGEWVLRRACEQAVAWYQALGY-DFRMAVNLS 745 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ ++ ++ +++T P+ +++ +ES++MG + R + L GI +++D Sbjct: 746 ARQFQTGDVVPMIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISID 805 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P VK + S + G +A+ +I+ MA+ + T+ A+ + Sbjct: 806 DFGTGYSSLSYLQRFPISNVKIDRSFILGIPSDPDSVALTEAIVAMARALGMTVTAEGVE 865 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++ L + GC IQ ++ P+ +LL+ +V Sbjct: 866 DADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLAVV 906 >gi|124515412|gb|EAY56922.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum rubarum] Length = 703 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 131/578 (22%), Positives = 263/578 (45%), Gaps = 9/578 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + + + E+ + + GD V D P + G Sbjct: 114 MVAVRDISRRKQLIHDLHLEKEQWFVTLKSIGDAVVTTDEHGRVTYVNPVAEHLTGWKVE 173 Query: 444 SMHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G + ++ R+ +D + + L + + + + P Sbjct: 174 EADGHPVSKVFRIVNEYSREPAENPVDRALLEGTIVGLANHTLLLSRSGEEFSIEDSAAP 233 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + ++NG+I I + D+TE++K + I A D+LT +PNR F DRL+ + + Sbjct: 234 IQDNNGEIRGCIIVFRDVTEKRKLEQRIAYQANFDSLTDLPNRHLFQDRLSRAVGQAHRT 293 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 +L ++ +D+D +K IND +G GD VLV L +R+ +++ D +AR+ G+ F +IL Sbjct: 294 GSL-VALLYLDVDYFKNINDRMGHPYGDRVLVELGKRLKTVVRETDTIARIGGDEFAVIL 352 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 ++ + + AMP + +T SIG A + ++ +++NA++A+ Sbjct: 353 CDLHDRSEAMVLGRRLMIEAAMPFRIDGSRADLTVSIGVALYPEDGTDATTLIRNADIAL 412 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y K G N++ F R + + + +L A++ + YL Y PI+ L VG+E Sbjct: 413 YQVKREGRNNIAFFSREMNRFVQSTLKTESELREALDKNRFYLAYQPIVHLGSALAVGVE 472 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W H + EF+ IAEE+ +I + ++L R+ W Q + +N Sbjct: 473 ALLRWRH-RGKVRFPEEFVPIAEEMGLILPLGQWILREAIREAGVWIRQGINLG-RLTVN 530 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ K + + +++ + + PS +++ +E +M + L R+R++G+ ++ Sbjct: 531 VSVKQIHSEGFSDFLESTLRENGLPPSVLEIEITERTLMFRDHHTVSTLNRIREMGVKVS 590 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917 +DDFG S L+Y+ P +T+K + S + + AI+R+I+ MA+++ ++A+ Sbjct: 591 IDDFGIGYSSLNYIRNFPVNTLKIDRSFLAEMLDNHYDRAIVRAILAMAQSLSIDVVAEG 650 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + L GC Q + P+ I + + Sbjct: 651 VERLEQARFLQENGCLMAQGFFYSEPVSPEEIFRYFRR 688 Score = 68.1 bits (165), Expect = 8e-09, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 6/126 (4%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + G+ + D+ R + + G + G +++ DR+++ Sbjct: 10 HQFILQSMGEAILAVDLSRQILWINVGFTRLFGYDPEEVVGRKPDFIY----ADRNDYEE 65 Query: 467 I--LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 L + + YE R D Q W + N GD + ++ DI+ +K+ Sbjct: 66 QGRLRYNLEAPSVQTPYEMRYVKKDGQVFWGEAWGAAVHNRKGDRIGFMVAVRDISRRKQ 125 Query: 525 SLEGIL 530 + + Sbjct: 126 LIHDLH 131 >gi|91777085|ref|YP_546841.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] gi|91711072|gb|ABE51000.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] Length = 951 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 152/617 (24%), Positives = 297/617 (48%), Gaps = 16/617 (2%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQSLAVL 412 + +TKR A +V+ ++G + + + + + Sbjct: 342 SVLQVTKRNGEKAWIEAYKSPMVVDGKVMGTVGFFRDITDIKQNEEKLIQRERELQSLID 401 Query: 413 GSGDIVWDWDIVRDRVTTT-PDIATILGLASGSMHGPIRNWLPYIHI--NDRDNFRTILD 469 + D + +D+ R+ P + I G+ SG + G + + + + Sbjct: 402 NTPDTIIRYDLNARRLYVNTPKLKRI-GIESGRLIGTTPSE----YPGGEAYMKYEEKIR 456 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + E +A + ++ +RI P G ++ + + DITE + E I Sbjct: 457 GVINSATPDF-LELHGKADNGNTWFIHVRIVPEFGEQGQVIGVLAVERDITELMEYRERI 515 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A+ D LTG+PNR F DR+ +L ++ + R +M++D+D++K++ND LG GD Sbjct: 516 HYLAYYDALTGLPNRTLFADRVNQVLADASWHEQ-RFGLMMLDLDRFKEVNDTLGHQAGD 574 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 D+LV++ +R+ ++ D +ARLSG+ F I+L N +A A + IA P + + Sbjct: 575 DLLVAVAQRLNASVRSYDTIARLSGDEFAILLPELRNPDDLATIARKINDEIAKPFLIHD 634 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMI 707 +E+ ++ SIG A + + + K+A++AMYHAK+ G N+ + + S S+ +M+ Sbjct: 635 KELFISTSIGIAIYPDDGDDRATLFKSADVAMYHAKNYGRNNYQFYSRELGSKASEYIML 694 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + A++N+E L Y P + LM EIVG EAL++W +P+ G + F+ +AEE +I Sbjct: 695 GASIRQALKNAEFELFYQPQVDLMSGEIVGAEALLRWRNPQLGVVMPDRFIKVAEESGLI 754 Query: 768 KAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I ++L ++ P+ + +N++S+ L N+L ++ ++++T P Sbjct: 755 VEIGEWVLREACSAVVCLNRYRPDDHPLSMAVNLSSRQFLYNDLLASVKDILAETGCKPE 814 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 +KL +ES+++ + + L +++GI++++DDF T S +SYLG P VK + S Sbjct: 815 WLKLEITESLLLEDSQEIISTLSTFKEMGITISIDDFCTGYSAMSYLGQFPISQVKIDRS 874 Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + ++ ++ +II +A + ++A+ + + L GC Q P+ Sbjct: 875 FVRDIAAKQDKLELITAIIRIAHALRLELVAEGVESKQQANLLKIQGCTIAQGYFFGKPM 934 Query: 945 GFNSILKLLKERFPLVK 961 + +L E L++ Sbjct: 935 RLRHLKLILAEEHDLMQ 951 Score = 61.9 bits (149), Expect = 6e-07, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 8/177 (4%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 ++ + + + V + + + A + + V+ S D Sbjct: 93 SLRNQAGDTVPVEIQSNYFVDADQAYCVLLGRDLTARFDMLDKLQEQELQYRQLVMNSPD 152 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNW-LPYIHINDRDNFRTILDSFVG 473 I +D R+ + + G+ + G P W P + D + + Sbjct: 153 IFIRYDQDCRRIFLSDGYEAVFGVPAAEALGRKPTEVWGRPMMRPEDFEARLR--EVMRS 210 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 ++ E+ D + + P N G+I + I DI+ ++ + Sbjct: 211 GEEQEIELEWV---GDEHYVCQSLHAVPERNVKGEIKGVLTITRDISHIRRVERELR 264 >gi|196045448|ref|ZP_03112679.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|218906527|ref|YP_002454361.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|225867330|ref|YP_002752708.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|228917957|ref|ZP_04081493.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228936633|ref|ZP_04099427.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124852|ref|ZP_04254030.1| Sensory box protein [Bacillus cereus 95/8201] gi|229187574|ref|ZP_04314714.1| Sensory box protein [Bacillus cereus BGSC 6E1] gi|196023655|gb|EDX62331.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|218536626|gb|ACK89024.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|225788718|gb|ACO28935.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|228595941|gb|EEK53621.1| Sensory box protein [Bacillus cereus BGSC 6E1] gi|228658643|gb|EEL14305.1| Sensory box protein [Bacillus cereus 95/8201] gi|228823068|gb|EEM68906.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228841754|gb|EEM86865.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 735 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L + E R + + ++++ I + P N +++ G Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG +GD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732 >gi|300117811|ref|ZP_07055578.1| sensory box/GGDEF family protein [Bacillus cereus SJ1] gi|298724675|gb|EFI65350.1| sensory box/GGDEF family protein [Bacillus cereus SJ1] Length = 909 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 165/870 (18%), Positives = 345/870 (39%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274 T + + + L L+ + + ++ + L+ Y Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAF 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ + I Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKR-PFAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E + Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL +K L++ Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|237746692|ref|ZP_04577172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] gi|229378043|gb|EEO28134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] Length = 1077 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 149/561 (26%), Positives = 260/561 (46%), Gaps = 12/561 (2%) Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 D E+ LA S + + + + + P I G + G L Sbjct: 516 EDEEKLQLAALVYKNSSEAILITNAKNEILAVNPAFERITGYTPAEIMGKDPKILSS-GR 574 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D+ ++ + D+ ++G + E R + + + + I + N +G + Y+ ++ND Sbjct: 575 QDKAFYKAMWDAL--GKKGFWRGELWNRKKNGEVYLAWLTINVVYNEDGSVRYYVELSND 632 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 TE+K++ + I A D LTG+PNR+ LDRL + + ++ +D+D +K Sbjct: 633 FTEKKEAEDMIWRQANFDFLTGLPNRRMLLDRLQQEIVKVNQSGK-KLALLFLDLDNFKD 691 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG +GD +LV + R+ E ++ D ++RL G+ F +IL ++ M Sbjct: 692 VNDTLGHDMGDLLLVDVAGRLNECVREIDTVSRLGGDEFAVILTELSDLRIAETVTQCML 751 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 +S+A P L ++ASIG + + KNA+ A+Y AK G N + F S Sbjct: 752 RSLAQPYRLDGEIAYLSASIGMTVYPDDGTGIETLQKNADQALYAAKQAGRNRMSYFTAS 811 Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +R+ + D+ +AVE + ++Y PI+ L +I EALI+W HP G +S +E Sbjct: 812 MQAAAQNRIRLANDMRIAVEEHQFEMLYQPIVELGTGKIHKAEALIRWHHPLRGIVSPAE 871 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE +I I+ + +AR++ WR++ P I NI+ Sbjct: 872 FISIAEETGLILTISDWAFREVAREVGRWRERY-YPGFQISFNISPALFQSKTDYSDWFD 930 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 +++ S I + +E V++ + + L + G+ + LDDFGT S LSYL Sbjct: 931 ELARLKAPGSSIVMEITEGVLLVSNWQVIAQLTEFHRHGMEIALDDFGTGYSSLSYLKKF 990 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + + + K +A+ ++I MA ++ +IA+ + E L GCDY Sbjct: 991 EIDYLKIDQAFVKNIENEPKDMALCEAMIVMAHKLDMKVIAEGVQNERQRWLLAGAGCDY 1050 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + PL LL++ Sbjct: 1051 GQGYLFSEPLAAAEFENLLEK 1071 Score = 61.9 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 6/159 (3%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +++ + V + + + R D++W + +T Sbjct: 372 LLLNLEKRVEERTEDLNKVNAVLAQSEARLKSVFDNIPDLIWLKNTAGVYLTCNRAFENF 431 Query: 438 LGLASGSMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 L + G L DR D R + + + ++ + + Sbjct: 432 FDLEENRIIGKTDAGL----PTDRQADMLRPEGSRIIEEGKPEVMEQWVTNVQTGKRVFF 487 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + P+ +G ++ +GIA DIT +K+ E + A Sbjct: 488 DVIKAPVKTPDGRLIGVLGIARDITRRKEDEEKLQLAAL 526 >gi|213971646|ref|ZP_03399754.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] gi|301385615|ref|ZP_07234033.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] gi|302061517|ref|ZP_07253058.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato K40] gi|302134619|ref|ZP_07260609.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923602|gb|EEB57189.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] Length = 643 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 153/666 (22%), Positives = 286/666 (42%), Gaps = 40/666 (6%) Query: 303 YPMVTASIARITLASIVLYYTYFI-IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361 A + + + + I + E A L + + W + + I Sbjct: 3 DYSRGALRTAVLYGLLSILWFMACDILLPLFIDEPARLAFCHQMAGYAWALLSAVTI--F 60 Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIV 418 + D ++ + G + D +R LA + + V Sbjct: 61 VARDRLRKIIGGEAHF--------------------ERQQDDYDRLRLAEAVFDSTREGV 100 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 D V I G + + G + H + +R + S + G Sbjct: 101 LVSDAQGRIVHVNRAFVDITGYQAEEVLGFNPSTFKSGRH--GPEFYRQMYHSLLS--VG 156 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + E R + + IR + +G + ++ + +DIT K+S + D Sbjct: 157 QWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQLKHFVAVFSDITAIKRSERELAQLIHFDA 216 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LT +PNR DR++ L + +++ID+D +K IND LG VGDDVL ++ Sbjct: 217 LTDLPNRLLLTDRISQALTSARASKRG-CALLLIDLDHFKNINDSLGHNVGDDVLKAVAE 275 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L LAR G+ F +++ + + ++ A A + + + P + ++ VTAS Sbjct: 276 RLKGLCGNETTLARPGGDEFALLVKNCSQVVRAAALAQQVSEVLKAPFVIAAHQLFVTAS 335 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAV 715 +G + + ++ ++L+NA+ A++ AK G + + + RV + +L A+ Sbjct: 336 MGISLYPGDAQSAEQLLRNADSALFKAKSEGRDCYALYTEELTAHAQQRVQLAGELRQAI 395 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E EL + Y P+ L+ + G+EAL++W HP G +S EF+ IAE+ +I I+ ++L Sbjct: 396 EQGELRVFYQPVHDLITRSVCGVEALVRWQHPTRGMVSPGEFIPIAEQNGLIADIDAWVL 455 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 R + +W + F+ +N++S+ +L + ++ T P+ ++L +ES Sbjct: 456 NTACRQMRAWLTEGVSIA-FVAVNVSSRLFSRGDLDRQVAQVLHDTGLDPAFLELEVTES 514 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 VM +PE++ L RLR +G+SL +DDFGT S L L +P +K + + G Sbjct: 515 AVMEDPEQAIEQLHRLRDLGLSLAIDDFGTGYSSLLRLKRMPVQKLKIDQGFVAGLPGDG 574 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 IAI+R++I + ++ ++A+ I L GC Q A P+ + ++ Sbjct: 575 DDIAIVRAVIALGASLGMRVLAEGIEQASQAAFLLENGCQLGQGYWFARPMAAH-LIDW- 632 Query: 954 KERFPL 959 P+ Sbjct: 633 -SHAPV 637 >gi|119900138|ref|YP_935351.1| GGDEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72] gi|119672551|emb|CAL96465.1| GGDEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72] Length = 689 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 142/586 (24%), Positives = 267/586 (45%), Gaps = 12/586 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 G+ V++ + + + ++ + + V+ P+ Sbjct: 103 GIEWEGRRARLAVVEDLTEPRRHMRALEESEQQYRATMGAALVGVYVLQ-DFRFRYVNPE 161 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 + G ++ + + L + +R+ R L G +E D Sbjct: 162 LCRYFGYSADELVDKL-GPLDLVVAEEREYVREQLARRARGEPGH-PFELTGLRRDGSHF 219 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 ++ P + G +G D++E K + + I A+ D LTG+PNR DR Sbjct: 220 PFMVFGAPSTWR-GQPAS-VGTVFDLSEIKAAEDRIRQLAYFDPLTGLPNRSLLEDRAGQ 277 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +L + D T+M ID+D++K +ND LG +GD +L +R+ + ++ D +ARL Sbjct: 278 VLVRAGRDRRA-ATLMFIDLDRFKTVNDSLGHLMGDQLLRLAGQRLRDSVRLSDTVARLG 336 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F I+L + + A + + A P +L +RE+T++ SIG A + + Sbjct: 337 GDEF-IVLAPDTGAEGAVRLAEKILEVFAAPFDLDDRELTISPSIGIARYPDDGKDFPAL 395 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLM 731 L++A++AMY AK G N F + ++++ L A+++ +L LVY P++ + Sbjct: 396 LQSADIAMYQAKREGRNGFRMFSIEMNAPILESLLLETQLRRALDHGQLSLVYQPMVDIA 455 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 IVG EAL++W HP+ G IS F+ +AEE +I I ++LE+ + WR Sbjct: 456 SGRIVGAEALLRWQHPQHGEISPVRFIPVAEESGLILPIGEWVLEQALGQVQRWRAA-GH 514 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 P + + +N+++ + + L+ S ++L +ESV+M + ER+ + L Sbjct: 515 PDLVMAVNLSALQFERLNISNTVLRLLDHYGLPGSALELELTESVLMEDAERAVAAMLNL 574 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 G+ L++DDFGT S L+YL +P +K + S + ++ R+I+ +A+++ Sbjct: 575 ADRGVRLSVDDFGTGYSSLAYLTRLPLAKLKIDRSFVRNIPSDASARSVARTILDLARSL 634 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + E + L CD Q + P+ + LL+ Sbjct: 635 ALEVIAEGVENEAQLLLLREWCCDQAQGYLYSRPVPARAFEALLRA 680 >gi|327193248|gb|EGE60154.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium etli CNPAF512] Length = 843 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 142/582 (24%), Positives = 255/582 (43%), Gaps = 11/582 (1%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + + I S + + D++W D+ V + Sbjct: 262 AAATTLLAFSRDITERKQAEDAINSVRTQLLSVLQTMPDMIWVKDMNGAYVLCNHTFERM 321 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL--QYEFRVRAADNQFHWM 495 GLA + G L I R F D + E+ + Q + Sbjct: 322 TGLAEADVVGKTDFDLFDI---GRARFFRESDKAAIKAGECILSDEEWVISQQSGQSVLL 378 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 R P++++ G ++ +G+A D+TE S + I AF D LT +PNR F DRL ++ Sbjct: 379 ETRKVPITDAEGAVVGVLGVARDVTELNASRQKIHQMAFYDPLTALPNRSLFNDRLRQMI 438 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + + R VM+IDID +K +ND +G VGD++L R+ ++ D +ARL G+ Sbjct: 439 TSAVSRGQ-RAGVMLIDIDHFKVVNDTMGHPVGDELLCQAAARLNASVRDYDTVARLGGD 497 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L + A + L +E+ V+ S+G A + +++++K Sbjct: 498 EFAILLPDLRPGDDLGRVASDILDKFRENFLLDGKEVFVSCSVGIALYPDDSAEANDLVK 557 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 A+ AMY AK G N + DR+ ++ DL A+E EL L Y P + L Sbjct: 558 YADSAMYLAKRSGRNSFRFYSKDLTASVEDRMRLELDLRRAIERGELELHYQPKVLLDSG 617 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--- 790 ++G EAL++W H + G I F+ +AEE +I + ++L + + ++ Sbjct: 618 AMIGSEALLRWRHHEMGMIPPLRFIPVAEETGLIVDLGRWVLREACQTAAEFNAKSRVES 677 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 P + IN++ K L + ++ +T +++ +ES+++ + + L Sbjct: 678 RSPHKVAINLSVKQFQSAGLVRSIGEILDETGCRAEWVEIEITESLLLDQKDETLQTLSD 737 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIE 910 LR +G S+ +DDFGT S L+YL P DT+K + S + + + ++++I+ +A+ + Sbjct: 738 LRSMGFSIAIDDFGTGYSALNYLARFPIDTLKIDRSFINSTDRRNEELVKAILSIARCLG 797 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++A+ + L GC Q + L I+ L Sbjct: 798 QEVVAEGVETAEQAAFLAANGCGSAQGFLYSKALPKPEIMAL 839 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 44/145 (30%), Gaps = 4/145 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + E + D++++ D + +L Sbjct: 141 IGAVVDITEHKRAERELKKALEFAEGIITAIPDVLFEVDEDGRYLQVWTRSPELLAQQRE 200 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + + D L + + R+ + + W + + Sbjct: 201 MLLGKSVG--DVLAPDQADIAMEALRTAGKEGVAYGRC-IRISLPNGETRWFELSVARRP 257 Query: 504 NSNG-DILRYIGIANDITEQKKSLE 527 N++ + + DITE+K++ + Sbjct: 258 NADPAAATTLLAFSRDITERKQAED 282 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 4/141 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 H A QG D E A+LG V+ D + V + G + G Sbjct: 19 HGHAAQPAHQGETIDREALLDALLGPFPLPVFYKDPLGRYVGCNKAFEDLFGQGREEIIG 78 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + + + R G + ++ A+ ++ +S NG Sbjct: 79 KTDLELN---PDLLAELHLAGNEALLERVGGRYSKSKIITANGGVRDVVWNKAVLSGGNG 135 Query: 508 DILRYIGIANDITEQKKSLEG 528 D IG DITE K++ Sbjct: 136 DAAGLIGAVVDITEHKRAERE 156 >gi|260773786|ref|ZP_05882701.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Vibrio metschnikovii CIP 69.14] gi|260610747|gb|EEX35951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Vibrio metschnikovii CIP 69.14] Length = 919 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 146/565 (25%), Positives = 260/565 (46%), Gaps = 21/565 (3%) Query: 399 GIFSDGERQSLAVL--GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455 + E +A S + + D + + I G + G I+ Sbjct: 347 AMQHMVENLKIAATVFESAEGMVVTDEKKHILRVNQAFTDITGYQPKDVLGHHIKVIRSG 406 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH--WMIIRIRPMSNSNGDILRYI 513 H +F L+ + + G Q E + + + + W +I +S+ +I+ Y+ Sbjct: 407 RH---NQSFYDELELQLKTQ-GSWQGEIFNKRKNGEEYLQWTMITA-VISDHEDEIINYV 461 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DIT++K + I AF D LTG+PNRQ ++RL + S + ++ +D+ Sbjct: 462 ITLIDITQRKAAESKIKQLAFYDQLTGLPNRQLLMERLESARLNSQRNGQY-GAILYLDL 520 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD- 632 D +K +ND G GD L +++R+ + ++ D +AR+ G+ F IIL ++ L IA Sbjct: 521 DDFKTLNDTRGHDTGDKFLTLVSQRLLDCVRRTDTVARIGGDEFVIILEQLDSDLDIASK 580 Query: 633 ----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + +++ P + E T SIG + E+LK+A+LAMY AK G Sbjct: 581 RADLLCRKILDTLSKPYYIDNIEHFSTLSIGVTLFLGETKGIDELLKHADLAMYQAKGAG 640 Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N F + + D+ A+ +E L Y P + D ++ G EALI+W H Sbjct: 641 RNTHRFFNPEMQAKVLEHAAMANDIRHALTRNEFTLYYQPQVTH-DGQLTGAEALIRWQH 699 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 PK G IS EF+ IAEE +I + ++L++ + + W++ + + INI++K Sbjct: 700 PKQGTISPIEFIPIAEETGLILPLGEWVLDQACQVLAVWQNSPLTDSLVLAINISAKQFH 759 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 + + + + +P R+KL +ES++ + E + + +L+K G+S +LDDFGT Sbjct: 760 QTGFVQQVLEALQRYRANPDRLKLELTESMLHEDLEDTITKMSQLKKYGVSFSLDDFGTG 819 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L+YL +P D +K + S + I R+I+ +AK++ +IA+ + + Sbjct: 820 YSSLNYLKRLPLDQLKIDKSFVRDLLTNSHDADIARTIVSLAKSMNLAVIAEGVETQEQR 879 Query: 925 KELTRMGCDYIQDSHVASPLGFNSI 949 L GC Q + P+ + Sbjct: 880 LALASYGCLDFQGYLFSRPVPLEAF 904 >gi|28867537|ref|NP_790156.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28850772|gb|AAO53851.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 643 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 149/633 (23%), Positives = 284/633 (44%), Gaps = 20/633 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394 + + + + I L + + + VL+ + F ++ ++ Sbjct: 14 LYGLLSILWFMACDILLPLFVDEPARLAFCHQMAGYAWVLLSAVTIFVARDRLRKIIGGE 73 Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + D +R LA + + V D V I G + + G Sbjct: 74 AHFERQQDDYDRLRLAEAVFDSTREGVLVSDAQGRIVHVNRAFVDITGYQAEEVLGFNPS 133 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H + +R + S + G+ E R + + IR + +G + Sbjct: 134 TFKSGRH--GPEFYRQMYHSLLS--VGQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQLK 189 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + +DIT K+S + D LT +PNR DR++ L + +++ Sbjct: 190 HFVAVFSDITAIKRSERELAQLIHFDALTDLPNRLLLTDRISQALTSARASKRG-CALLL 248 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND LG VGDDVL ++ R+ L LAR G+ F +++ + + ++ Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLKAVAERLKGLCGNETTLARPGGDEFALLVKNCSQVVRA 308 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + + + P + ++ VTAS+G + + ++ ++L+NA+ A++ AK G + Sbjct: 309 AALAQQVSEVLKAPFVIAAHQLFVTASMGISLYPGDAQSAEQLLRNADSALFKAKSEGRD 368 Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + RV + +L A+E EL + Y P+ L+ + G+EAL++W HP Sbjct: 369 CYALYTEELTAHAQQRVQLAGELRQAIEQGELRVFYQPVHDLITRSVCGVEALVRWQHPT 428 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ IAE+ +I I+ ++L R + +W + +P F+ +N++S+ Sbjct: 429 RGMVSPGEFIPIAEQNGLIADIDAWVLNTACRQMRAWLTE-GVPIAFVAVNVSSRLFSRG 487 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + ++ P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT S Sbjct: 488 DLDRQVAQVLHDIGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L L +P +K + + G IAI+R++I + ++ ++A+ I Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDGDDIAIVRAVIALGASLGMRVLAEGIEQASQAAF 607 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 L GC Q A P+ + ++ P+ Sbjct: 608 LLENGCQLGQGYWFARPMAAH-LIDW--SHAPV 637 >gi|295690973|ref|YP_003594666.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC 21756] gi|295432876|gb|ADG12048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caulobacter segnis ATCC 21756] Length = 789 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 160/719 (22%), Positives = 303/719 (42%), Gaps = 31/719 (4%) Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIA---------CIAILFCMSFYYPMVTAS 309 + + ++ + L W A + + I A L + + + Sbjct: 51 SLIIWACLVVAYALLGLRGWVASQRRRSANQIVSARGVRRITWQAGLLGVLWAALPIMTM 110 Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369 A + +I + A+L +PA + + + L +D I Sbjct: 111 PAEQGFEGSMPMMVASVIAGMIGCGGFALLTLPAAAIAYSTPMALGALWALSTSHDPILY 170 Query: 370 ALVGGLVLIVILIGFTVIQHVL---ATGYFSQGIFSDGERQSLAV----LGSGDIVWDWD 422 AL G L+ ++ + + H ++ + + + SL + G+ D +W+ D Sbjct: 171 ALGGLLIFCHAVVVASCLSHARIFVDRLLAAEELDTQRQVVSLLLSDFEEGASDWLWEVD 230 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + G+ + G + L D L + ++ Sbjct: 231 CQGRMTYVSDRMVAAAGVERSKLLGQPMSDLCG-AAEGPDGPVAALSALFVEQKTFRDVV 289 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 + + Q HW + +P+ + +G + G+ DIT+ ++ I A D LT +P Sbjct: 290 VSIEVGE-QTHWWSLSAKPVHDLDGHFTGFRGVGADITQAREDQARISRLAHYDVLTQLP 348 Query: 543 NRQSFLDRLTTILDLSATDDNLR----PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 NR SFL L+ D V+ +D+D +K +ND LG +GDD+LV + R Sbjct: 349 NRLSFLQALSRAWTEHGRGDREPRGAGCAVLCLDLDHFKGVNDSLGHPIGDDLLVQASAR 408 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + + + ++ARL G+ F +++ + + + A + S++ P ++ + + AS+ Sbjct: 409 LRDCVGEMGLVARLGGDEFAVVVAPSPGAEALGELARDIVDSLSRPYDVRGNHVLIGASV 468 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVE 716 G A +LKNA+LA+Y AK G F S R ++ DL A+E Sbjct: 469 GIAEAPLHADDPDGLLKNADLALYQAKGDGRGAYRFFETSMDLWIQQRRELEMDLREALE 528 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 N EL L + P++ +I G EAL++W HP+ G ++ +EF+ AE+ +I I ++L Sbjct: 529 NDELKLFFQPLMGRDGSQITGFEALLRWQHPRRGLVAPNEFVECAEQWGLIGKIGEWVLA 588 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 R +W P+ + +N++ +L ++ + +PSR++L +E + Sbjct: 589 EACRTAATWPS-----PMTVAVNLSPHQFASGDLVAQVRKALKAARLAPSRLELEITEGL 643 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896 ++ + + L +L+K+G+ + +DDFGT S LSYL PFD +K + S + + Sbjct: 644 LLQDSATTLDQLAQLKKLGVKIAMDDFGTGYSSLSYLWRFPFDKIKIDRSFVAEMQDNAA 703 Query: 897 A--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ILR+I + + + + A+ + K L+ M CD+ Q P+ I L Sbjct: 704 IADILRTIALLGQTLNLEVTAEGVETADQAKLLSEMRCDHFQGFLYGRPMPVGDIPSFL 762 >gi|87119415|ref|ZP_01075312.1| hypothetical protein MED121_05740 [Marinomonas sp. MED121] gi|86164891|gb|EAQ66159.1| hypothetical protein MED121_05740 [Marinomonas sp. MED121] Length = 938 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 152/642 (23%), Positives = 287/642 (44%), Gaps = 19/642 (2%) Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 + + GY + +L A + + + ++ L + L + V L Sbjct: 287 WGWTVLGGYNNSDILFDAQSQLNMLKLNQQKSMQHLLIEFSLLSCLSLIITFGVALWLRK 346 Query: 386 VIQHVLATGYFSQGIF----SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + ++ E + + + + D +T I G + Sbjct: 347 AFMSYHTHSQKQHELLLQNKTELELSARVFDSTSEGIMITDEFNQIITCNSSFCRITGYS 406 Query: 442 SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + + D D + + + +G Q E + + I Sbjct: 407 KEEIIGLTPNTFASGL--TDPDIYSDMWHAL--TTKGLWQGEVINQHKQGHLFPEWLSIN 462 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD---- 556 + G + YIG DI+++K++ + A D+LT +PNR+ F +++ I++ Sbjct: 463 VYKDKQGKAINYIGTIVDISKRKQAENTLQHLADYDSLTDLPNRRFFKEQVDHIIEIDKQ 522 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 T+ + ++ +D+D +K IND LG + GD VL + R+ E I++RL G+ Sbjct: 523 RKPTEPINKFALLFLDLDYFKFINDSLGHSAGDKVLKIIASRLLEHKDKNTIISRLGGDE 582 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L + + F + ++I P+N+L R + VT SIG + ++ +LKN Sbjct: 583 FVIVLQDIASEKAVKQFCFELMQNIEKPMNILGRSLIVTPSIGATLYPKDGNRTNILLKN 642 Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ A+Y AK G N+V+ F ++ R+ ++ DL A+ ++ + Y P + L ++ Sbjct: 643 ADAALYRAKENGRNNVQFFTANLNRDALKRLSLENDLRRALNRNQFEIYYQPQVNLNTKQ 702 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 ++G EALI+W HP G +S EF+ IAEE +I I ++L + +W ++ I Sbjct: 703 VIGCEALIRWHHPTKGFVSPIEFIPIAEETGIINEIGEWILFEACQQAANWCNEYGRE-I 761 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I IN++++ D+ L + ++++ + L +ES+++ +PE+ L +LR+ Sbjct: 762 DIAINLSARQF-DDTLVSTVLKALNQSQLPSHCLTLEITESILVQDPEQVIHTLTQLRQS 820 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 I + LDDFGT S LSYL P D +K + + + AI+ S++ +AK+ + T Sbjct: 821 SIKVALDDFGTGFSSLSYLKRFPLDKLKIDRAFVKDLPNNTDDGAIIASVLAVAKHFQLT 880 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 IA+ I L + C Q PL ++ + L+ Sbjct: 881 TIAEGIENTDQEALLEALNCTQGQGYFYDKPLTAYAMAQRLR 922 >gi|23015361|ref|ZP_00055139.1| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 916 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 146/663 (22%), Positives = 271/663 (40%), Gaps = 19/663 (2%) Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 L + A L ++ I + Y R +L P L + Sbjct: 258 LMVVEQPLFSALKLPAGAALIVALVLLFAGIGAWFLMRYSRHAILAPIDALA----DAVR 313 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 + + L + T + E+ L + + Sbjct: 314 DVEAGDMSRRAPVRSSDEIGALAMAFNSMTG-----RVADLLNDLGDSEEKFRLVMESAS 368 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFVGY 474 D + D T + G + + G L H D+ L + Sbjct: 369 DALVVIDAQGCITTWNRAATRMFGYQAAEVIGRNVGLLMPSHLRGRHDDVLAHLRTETDG 428 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R E + D + + + S + GI DI+ +K++ I A Sbjct: 429 RLQTEPREQPAQRKDGTLFPVEVTLAGFSFKGQR--YFSGIMRDISARKEAESNIRFLAR 486 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LTG+ NR ++L IL + ++ ID+D +K +ND+LG + GD +LV Sbjct: 487 HDALTGLANRVVLREKLEEILPETGARQ--LHCLLFIDLDNFKVVNDILGHSFGDRLLVE 544 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + R+ + +I+ R G+ F ++ + K A+ A + ++ + + I V Sbjct: 545 VAGRLRSIEGGRNIVCRHGGDEFILLAPDIQSREKAAELAERVLAVMSDSFAIDAQAIEV 604 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLC 712 SIG + + +++ A++AMY AK +G + F + ++R +++ L Sbjct: 605 GCSIGISMAPDDGDKAETLIRKADIAMYKAKEKGRLGFQFFTGAMDRQMAERRQLEKSLR 664 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 + + ++++ P +RL + + G EAL +W P G + S F+ +AEE +I I Sbjct: 665 RGLRDGDVFIHLQPKVRLAEGRVTGFEALARWQSPDHGMVPPSRFIPVAEECGLIGGIGE 724 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 +L + WR + + + +N+++ L + L + +L+ + P+ ++L Sbjct: 725 LVLRLTMETLAGWRAHGRVL-LPVAVNLSAGQLGNPGLAGEIDSLLREFGLPPTVLELEL 783 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +ES++MG+ ++ R +L RL+ +GI L++DDFGT S LSYL P D +K + S +T Sbjct: 784 TESMLMGDADQVRAILFRLKDLGIKLSIDDFGTGYSSLSYLKRFPVDVLKIDKSFVTDLP 843 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + AI +II MAK + ++A+ + E L+ GCD+ Q A P+ Sbjct: 844 GDPEGEAICLAIINMAKALSLDVVAEGVETEAQSSFLSDNGCDFAQGFFFARPVSVEEAQ 903 Query: 951 KLL 953 L Sbjct: 904 DYL 906 >gi|301056816|ref|YP_003795027.1| hypothetical protein BACI_c53430 [Bacillus anthracis CI] gi|300378985|gb|ADK07889.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 892 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 181/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%) Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 K L+ +++ + I L + + ++ A+ + ++ YI + Sbjct: 54 AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287 GF K + S L + I + I F + L + W +I Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173 Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 S + I L+ Y + I T+ + Y F + G+K LI + Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384 + I + + K + ++ V + +LIG Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293 Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417 + +L + + +R D Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 353 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + ++ + + L +I D D + L + Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQ--LTKEGS 409 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 E R + + ++++ I + P N +++ GIA DIT + + + AF D Sbjct: 410 PQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ F L IL+ + N VM +D+D++KKIND LG +GD +L+ + + Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAK 527 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ D++AR G+ F I+L + A A + + P + + E+++T S Sbjct: 528 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG A + +E++KNA++AMY AK G N F + ++ +L A+ Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE I + ++L Sbjct: 648 QQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W +Q + + +N++ +L + ++ +T P + + +ES Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 + + + L +L+ +GI +++DDFGT S L+YL P +T+K + G + Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ SII ++K + +IA+ + E K L CD+IQ ++ P+ + +LL Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSNKDVWRLL 886 Query: 954 KER 956 ++ Sbjct: 887 HKK 889 >gi|253995496|ref|YP_003047560.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253982175|gb|ACT47033.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 739 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 154/583 (26%), Positives = 262/583 (44%), Gaps = 15/583 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F ++ + A + + ER V +++ + G Sbjct: 152 FVLVTDISAIKEAEKVLRQSEERFRSVVQDQTEVISRLRADGTYLFVNDVYCRFFGKTEQ 211 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 M G W P ++ D L + + + E RV + HWM R + Sbjct: 212 EMIGS--TWKPVVYAEDLQRVVDEL-AMLSSSNPVVMIENRVLSGTGDVHWMQFSNRGIF 268 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G + + DI+++K++ E + A++D LTG+ NR+ LDRL L SA Sbjct: 269 DEYGQLTEIQSVGRDISDRKRAEEEVQKLAYKDPLTGLSNRRLMLDRLRIALATSARSMQ 328 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ +D+DK+K IND G A GD +LV + +RI ++ D ++R G+ F +++ Sbjct: 329 Y-GALLFLDLDKFKVINDTQGHADGDLLLVEVAKRITACVREIDTVSRQGGDEFVVLVER 387 Query: 624 ENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 S +A A +R ++A P + I ++SIG + + E++K A+ Sbjct: 388 LGEGLEEASRTVAKIAETIRLTLAEPYQINNAHIHSSSSIGISLFCGHDQDVDELIKRAD 447 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK G N F V ++ DL A+ + L Y + + + + Sbjct: 448 MAMYQAKDGGRNRTRFFDPQMQELVEVRATLESDLHNALATDQFELHYQLQVNHEN-KPI 506 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS + F+ +AEE +I I ++L+ R I W A M + + Sbjct: 507 GAEALIRWVHPQRGMISPAHFIPVAEESALILNIGDWVLDEACRQIAVWSTNAKMCDLVL 566 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI-G 855 +NI+++ + + A I K PSR+KL +ESV + + LR+ G Sbjct: 567 AVNISAQQFKQAHFVDQVIAAIHKHGIDPSRLKLELTESVALDDITDVIAKKNLLRQKVG 626 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 ++L+LDDFGT S LSYL +P D +K + S + T ++++II MA+N + Sbjct: 627 VTLSLDDFGTGFSSLSYLKRLPLDQIKIDQSFVRDITTDKSDAVMVKTIIDMAQNFSLNV 686 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 IA+ + E + L C Q + PL L+++ Sbjct: 687 IAEGVETEAQLAFLKHHECKAYQGYLFSKPLPIEQFDALMQDY 729 >gi|229064952|ref|ZP_04200250.1| Sensory box/GGDEF [Bacillus cereus AH603] gi|228716253|gb|EEL67965.1| Sensory box/GGDEF [Bacillus cereus AH603] Length = 909 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 180/870 (20%), Positives = 350/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 + + + S F L + R+ D F ++P F Sbjct: 52 SYIFHFSNIKHGLSRLFWITLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ L + I + A F +Y++ ++ I Sbjct: 107 YL------LFLISFAFAFLYEIIYGRDLLEQLFTICDICIIVTAQFTLSYYLLIERTIHI 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 T + +V L Y D FL +NL L + L S+LI++ Y + Sbjct: 161 FTTSYIDMFVQLTYPMADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + +L + + + + Sbjct: 221 IKYFQPEHSMFTVAPLYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL-- 391 ++ I + I IGL + L + L+L + + + + Sbjct: 281 LMLIVFILVENVFAPIIVIGLMVTFAFVLIRHTLVRRQNKILLLAQMQFSLELEKQIELR 340 Query: 392 --ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + ++ D + T + + E R + +++ + P+ I Sbjct: 401 --YYSLMYEQDLEEIITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A+ D LT + NR+SF +L + + VM Sbjct: 456 SGAYLMIKDITESKQQQEQINFLAYHDTLTELANRRSFHQQLEKAIARAKISKRP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + S+ P + + + ++ SIG A + + +L++A++AMY K++G Sbjct: 575 VQKIADMIVLSMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E +LVY P + + +I+G EALI+W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+IS EF+ I EE + + ++L R + W+ + + +N+++K+ Sbjct: 695 LLGDISPCEFIPIVEETPQVIPLGHWVLRESCRQLKIWQS-FGYTNLKMSVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 N+L E + ++ P + L +E + M + + + L L +L++ GI ++DDFGT Sbjct: 754 NQLIENISRILKDVKIDPKDVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL +K L++ Sbjct: 874 FLKKNNCKYMQGYYFSKPLTSKQFIKFLQK 903 >gi|218438586|ref|YP_002376915.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] gi|218171314|gb|ACK70047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] Length = 1015 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 142/567 (25%), Positives = 259/567 (45%), Gaps = 13/567 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + LA + D + G G + + Sbjct: 449 ERKQAEEALRQQANLLDLAYEA----ILVRDGNNVITFWNQGAEQLYGWKKSQALGQVSH 504 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + D+ + G + E D + R + + G I Sbjct: 505 ---ILLQTEFNLSSPHFDAILR-LTGHWEGELTHTRQDGTKIIVESRQVLVQDDRGQIKG 560 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + DITE+K + + NA D LT +PNR ++R+ + + + ++ I Sbjct: 561 ILEVNRDITERKLAQFQLEHNALHDALTELPNRLLLMERIQAAIQRAKRKPHYHFALLFI 620 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG VGD +LV++ R+ ++ D +ARL G+ F I+L Sbjct: 621 DLDRFKTINDTLGHLVGDHLLVAIATRLQHCVRSGDTVARLGGDEFIILLDDLLEESDAF 680 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + I P+ + ++I +ASIG + +++L+NA+LAMY AK +G + Sbjct: 681 PITERILGRIKEPLVINNQQIQTSASIGIVFNRDGNESETDLLRNADLAMYSAKEQGKSR 740 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F + I+ +L A++ E L Y PI L + +VG EALI+W HP Sbjct: 741 YAVFNPTMHLRAHTLWEIENNLRTALDGQEFLLHYQPIFSLTTQTLVGFEALIRWRHPVR 800 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDN 808 G IS +F+ +AEE +I I ++L+ R ++ W++ F+ IN++S+ L Sbjct: 801 GLISPMDFIPVAEETGLIVPIGEWVLQEACRQLLHWQELNPGAKCCFMSINLSSRQLESG 860 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + ++ +T S +KL +E+++M N E + LL L+ I +++DDFGT S Sbjct: 861 NFIAVIDQILQQTPLSAKNLKLEITETLLMKNLEAASALLLELKNRAIGVSIDDFGTGYS 920 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL ++P D++K + S + + R ++ +++II +A + +IA+ I + + + Sbjct: 921 SLSYLCHLPVDSLKIDRSFVAKMDKGRESLQVIQAIISLAHQLNLEVIAEGIETQDHLTQ 980 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953 L + C+Y Q ++ PL +L+ Sbjct: 981 LHHLKCEYGQGYFLSKPLDSEKATQLI 1007 Score = 59.2 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 49/383 (12%), Positives = 108/383 (28%), Gaps = 59/383 (15%) Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266 + + + W + + L + V G + A + I + S+L Sbjct: 84 LALIVFLLGLLTSSQYLFGWNLGIDQLLFKEELKQSVLSKPGRMAPETALNYIFMGSALW 143 Query: 267 IFLFMYLHWNR-------WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIV 319 + + + + I + L ++ + + L + Sbjct: 144 VLAIKPVRFRLVQLLISITSIISIQVLVGYIYQVKPLVGLASNNQVAIHTSILFLLLCVG 203 Query: 320 LY------YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 + +I G A L+PA ++ + L ++G Sbjct: 204 ILCANPCKGWMRLIASNSAGGIIARSLLPAAFILPLGLGWLVEGSGWMDVAFGQSFHVIG 263 Query: 374 GLVLIVILIGFTVI---QHVLATGYFSQGIFSD--------------------------G 404 +V+ + LI + + L + + S Sbjct: 264 NIVVFIGLILYCAKELYRMDLQRHRAEEALRSAYDDLDLKVQERTSKLFQAYETLAAEIE 323 Query: 405 ER-------------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 ER + + ++ D+ + + ++GL M G Sbjct: 324 ERKRAEAAQKASQKNLQTFIDNTSAAIYLKDLQGKFLLVNRQLEKLVGLKREQMIGKTDG 383 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + D + + D V L E ++ + Q + P+ + NG + Sbjct: 384 D---VFPEDIADAFVVNDRQVLQAGESLSLEEQII-VERQLRTYLSVKFPLYDPNGLLYG 439 Query: 512 YIGIANDITEQKKSLEGILCNAF 534 GI+ DITE+K++ E + A Sbjct: 440 IGGISTDITERKQAEEALRQQAN 462 >gi|89092239|ref|ZP_01165193.1| hypothetical protein MED92_05488 [Oceanospirillum sp. MED92] gi|89083327|gb|EAR62545.1| hypothetical protein MED92_05488 [Oceanospirillum sp. MED92] Length = 955 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 141/564 (25%), Positives = 255/564 (45%), Gaps = 12/564 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457 + + + +G+ V D V I G + G L H Sbjct: 395 EAENRLNQAAAVFRSTGEGVAITDQNGTIVDVNEAFTKITGFDRDEVIGKNTRILQSGKH 454 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIA 516 D + + + + G + E RA + I+ I + G Y+G+ Sbjct: 455 --DIAFYENMWEQIQKH--GHWRGEVWNRAKSGTIYPEILTISAIDFKKGQQPSGYVGVF 510 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT K++ + A D LT +PNR F +RL L +S + V+ +D+D++ Sbjct: 511 ADITSLKETEARLDHLAHYDALTELPNRLLFRERLIHSLLMSER-KKTKVAVLFLDLDRF 569 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG VGD +L + R+ +++ D + R+SG+ F +IL + + Sbjct: 570 KNINDTLGHGVGDILLAEIASRLRHVVRMGDTVGRISGDEFCLILEDIQDVTDVVPIVEK 629 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + I + + ++ASIG A + + +L ++ AMY AK G N + + Sbjct: 630 ILSVFSQTIQINSHMLQISASIGVAISPDNSNDADALLSFSDSAMYEAKEAGRNTYKFYT 689 Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ + ++ L A+E S+ ++ Y P +R+ D +VG+EAL++W HP+ G I Sbjct: 690 AEMTQQALEHSFVQSALRDALEQSQFFVTYQPQLRIKDYSMVGVEALVRWQHPERGLIPP 749 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAE +I+ + ++L + W ++ I +N+++ L D E + Sbjct: 750 DSFIPIAENSGLIRELGAWILRTACEQGVQWLNEQVNFG-RIYVNVSATQLHDESFTEAV 808 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + +T + ++ L +ES +M +P+ + +L ++IGI L +DDFGT S LSYL Sbjct: 809 IMCLKETGFPAEKLGLEVTESFIMKDPQHAINVLSSFKEIGIELAIDDFGTGYSSLSYLK 868 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + +AI ++I M K + +IA+ + +I L C Sbjct: 869 QLPIDKLKIDQSFIRDIPDDPNDMAIAEAVIAMGKALNLEVIAEGVESQIQADFLLDKEC 928 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 +Q A PL ++ + K+R Sbjct: 929 TEVQGYLYAHPLTADAFSEWEKQR 952 Score = 72.3 bits (176), Expect = 4e-10, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 3/127 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + +R V ++ + + + + G S + G N+L Sbjct: 140 AEKALRESEQRYRGVVEDFPIMICTYKPGGEIIFVNQSYCKLFGRTSEDLVGS--NFLDL 197 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 I DR + + + + E RV + W R + N G+I Y I Sbjct: 198 IPEGDRPALISNISG-LNTSKPTFVNEHRVILPGDNIGWQRWTNRAIFNRQGEIESYQSI 256 Query: 516 ANDITEQ 522 DIT++ Sbjct: 257 GEDITQR 263 Score = 61.5 bits (148), Expect = 7e-07, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 51/140 (36%), Gaps = 5/140 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMH-GPIRNWL 453 + + S + S + + + R+ + + I G + S+ ++ Sbjct: 267 ERALESSEAQLSTLIGNLPGVAFQCLNNRNWTMLYLSDRCEEIFGYTAESLIKSRYCSYA 326 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 I R+ + + + + + ++++ + + WM + R +S + + Sbjct: 327 QLIEPGYREYVWAAVQNSLKTQT-PYKVLYKLKHSSGESRWMEEQGRGVSTDSTGLT-IE 384 Query: 514 GIANDITEQKKSLEGILCNA 533 G D+TE+ ++ + A Sbjct: 385 GYIEDVTERIEAENRLNQAA 404 Score = 40.3 bits (93), Expect = 1.5, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 43/153 (28%), Gaps = 8/153 (5%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + F + + + + + + + ++ + G Sbjct: 1 MAQMTNDSKFLEKLKNSSDLFEIVFDHQFQFMAILEPDGRVISVNQVALSQQGYTREDFV 60 Query: 447 GPI----RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G +W + ++ L + R + A D + Sbjct: 61 GRYFWESASWRHL--PDWEAIWKKRLKAAYENRSPIFTDDV-YEAHDGSIRHADAVTIAL 117 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 +S+G + Y+ A D T+ K E L + Q Sbjct: 118 FDSDGKLNGYLIQAIDKTD-KAIAEKALRESEQ 149 >gi|167648073|ref|YP_001685736.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Caulobacter sp. K31] gi|167350503|gb|ABZ73238.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caulobacter sp. K31] Length = 692 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 141/554 (25%), Positives = 252/554 (45%), Gaps = 14/554 (2%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 D +R +A+ IV ++D+ + + + + L +H +DR+ Sbjct: 145 DQQRLRMALELDDLIVREYDLRTGEIHFSGTAPDL-----ERWCQFKDDPLEVVHPDDRE 199 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 ++ + EFR+ D W+ + ++G R + + DIT++ Sbjct: 200 KMAELVRARKDGEAQVF--EFRLNRDDGVETWVRSVGKRFLGADGKPERLVNLFKDITDR 257 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 ++ E + AF+D LTG+PNR F + +D S L +++ID+D +K IND Sbjct: 258 RRQTEAVENLAFKDPLTGLPNRAYFNRKFQEAVDASEIMGEL-FGLIMIDVDHFKDINDT 316 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG GD +L L + + D +ARL G+ F +IL ++ + A++ + Sbjct: 317 LGHDAGDALLKRLAEMLHAAFRSGDTVARLGGDEFAVILRGLHSEADMMRPVNALQDLLR 376 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 PI R +V+ASIG A S M+KNA++A+Y AK G N F + S Sbjct: 377 RPIEHGGRSFSVSASIGAALHGDLDADPSHMIKNADIALYRAKDEGRNRSVVFTPAMRSS 436 Query: 703 DRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 I+ D+ A+ E L Y P++ + + G EAL++WDHP+ G ++ FM Sbjct: 437 LEQRIELLRDVRAAITAREFVLYYQPVVDIASNSVSGFEALMRWDHPEQGVLTPDRFMCA 496 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 E+ + + LE + + W DQ + +NI++ L E +Q +++ Sbjct: 497 FEDQDLSLKLGDLALEGALKQMRDWIDQGVEFG-RVAVNISAAQFRSGRLAEEVQDRLAR 555 Query: 821 TLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 R+ + +E+V MG E + L K G+ + LDDFGT + L+ L P D Sbjct: 556 WGVPCDRLTIEVTENVYMGWGSEMVSDTVRALHKAGVMIALDDFGTGYASLANLRQFPID 615 Query: 880 TVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 +K + S + + + AI++++I + ++ ++A+ + + + L GCD IQ H Sbjct: 616 RLKIDKSFVQNT--EDAAIVKAVITLGSSMGMKVVAEGVEDQAQLDALAGYGCDQIQGYH 673 Query: 940 VASPLGFNSILKLL 953 + P+ + L Sbjct: 674 FSRPMPAARVPGYL 687 >gi|52140213|ref|YP_086617.1| sensory box/GGDEF family protein [Bacillus cereus E33L] gi|51973682|gb|AAU15232.1| sensory box/GGDEF family protein [Bacillus cereus E33L] Length = 892 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 181/843 (21%), Positives = 342/843 (40%), Gaps = 73/843 (8%) Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 K L+ +++ + I L + + ++ A+ + ++ YI + Sbjct: 54 AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIIQYIFLFS 113 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHA-KVGYITFSGIACIA 294 GF K + S L + I + I F + L + + + G Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDVSNFRMLTIDTWVLIGYFIAQ 173 Query: 295 ILFCMS--------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 L + Y + I T+ + Y F + G+K LI + Sbjct: 174 SLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384 + I + + K + ++ V + +LIG Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293 Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417 + +L + + +R D Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 353 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + ++ + + L +I D D + L R Sbjct: 354 VFSLNMYGIFQQSNKACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQLTKEGRPQ 411 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 L E R + + ++++ I + P N +++ GIA DIT + + + AF D Sbjct: 412 TL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ F L IL+ + N VM +D+D++KKIND LG VGD +L+ + + Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGVGDLLLIEVAK 527 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ D++AR G+ F I+L + A A + + P + + E+++T S Sbjct: 528 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG A + +E++KNA++AMY AK G N F + ++ +L A+ Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE I + ++L Sbjct: 648 QQNEFFLEYQPQVSAKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W +Q + + +N++ +L + ++ +T P + + +ES Sbjct: 708 HTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELRPEALDIEITES 766 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 + + + L +L+ +GI +++DDFGT S L+YL P +T+K + G + Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ SII ++K + +IA+ + E K L CD+IQ ++ P+ + +LL Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886 Query: 954 KER 956 ++ Sbjct: 887 HKK 889 >gi|118480340|ref|YP_897491.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] gi|118419565|gb|ABK87984.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] Length = 909 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 173/870 (19%), Positives = 353/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEELPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 + + +V L Y D FL +NL L + L S+L+++ Y + Sbjct: 161 SSTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALLLYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMTTPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E + Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL +K L++ Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|212636403|ref|YP_002312928.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212557887|gb|ACJ30341.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3] Length = 1032 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 153/557 (27%), Positives = 256/557 (45%), Gaps = 15/557 (2%) Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 E LA S + + D +TT I G + + L Sbjct: 452 EESLKLAASVYNNSSEAMSVQDEAGVIITTNSAFTDITGYSEDEIKQQNIQVLQCK---- 507 Query: 461 RDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 R+N+ + GR Q E +R + + + + I + +S R + + +DI Sbjct: 508 RNNYSVYEQISLSVEETGRWQGEMWLRRKNGEELVVWLTINTLFDSEAQTERRVALFSDI 567 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++K++ + I A D LTG+PNR+ LD L + + S + +M +D+D +K++ Sbjct: 568 TDKKQAEQIIWKQANYDPLTGLPNRRMLLDYLGSEILKSDRREK-HFALMFLDLDYFKEV 626 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +GD +L +R+ ++ D++ARL G+ F ++L + + A + Sbjct: 627 NDTLGHDMGDLLLTEAAKRLKSCIRDSDVVARLGGDEFTVVLSGITDIKGVDKVAQNILN 686 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +A P +L E ++ASIG + + +LK+A+ AMY AK +G N F S Sbjct: 687 RLAEPFSLGEETSYISASIGITLYPDDASSIEGLLKHADQAMYAAKDQGRNRFHYFTPSM 746 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ R+ + +DL LAV N E L Y PI+ L + V EALI+W HPK G +S EF Sbjct: 747 QRNAKYRMRLIQDLRLAVTNQEFELYYQPIVCLTGDPSVKAEALIRWHHPKRGLVSPIEF 806 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQA 816 + +AEE +I I ++ ++ AR WRD+ + + I IN + D E + A Sbjct: 807 IAVAEETGLIVEIGNWVFQQAARQCALWRDRFGIE-VQISINKSPVQFRDEGESLDSWVA 865 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ S + I + +E +++ + + L + R G+ ++LDDFGT S L+YL Sbjct: 866 LLKTLNLSRNSICVEITEGLLLDSNQAIYSKLEQYRNAGMQISLDDFGTGYSSLAYLKKF 925 Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + +II MA + +IA+ + + L GCDY Sbjct: 926 DIDFLKIDQSFTRNLDSNSDDFTLCEAIIVMAHKLGMKVIAEGVETAYQRQVLADAGCDY 985 Query: 935 IQDSHVASPLGFNSILK 951 Q + P+ Sbjct: 986 GQGYLFSRPVTAEEFEA 1002 Score = 110 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 1/153 (0%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + + + + + E+ +L + S WDWDIV ++V A +LG Sbjct: 307 LVIVGLLNRSSQKQAEMAMLASQEQLALVLGSSELGFWDWDIVNNKVERNELSANLLGCD 366 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 +++ + W IH NDR +D + + + E+R+ A + W++ + Sbjct: 367 VTTLNENPKLWTRAIHPNDRVKVLRSIDEHLSGVSEQHKIEYRMYAHTGEIRWILDSGKI 426 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + N LR G+ +DIT+ K+ E + A Sbjct: 427 VSRDENNKPLRMCGVHSDITDSKRVEESLKLAA 459 Score = 61.5 bits (148), Expect = 7e-07, Method: Composition-based stats. Identities = 35/339 (10%), Positives = 100/339 (29%), Gaps = 33/339 (9%) Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFM-------- 271 + + + + F+ L +WR + I + Sbjct: 5 LFFSLIQNAALLLAMVFVYDAFPRSHKRELDVLWRVGIGALVGVISISVMLSPWEYTTGV 64 Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 + + + F GI + + + A + +I+ ++ Sbjct: 65 FFDSRTVILGISGMFFGGIPTLVAVAISGLFRLSEGGVAAWSGIGTIMTSGLVGYLWGKY 124 Query: 332 K----GYERAV-----LLIPAWILIFIWFIG---LWMAITKRLDNDIIQPALVGGLVLIV 379 + G R + + + + +++ K++ + + +L + Sbjct: 125 RKGDIGDIRFRELLIFGFSLHILALLWGLVLPFDVALSLLKQITLPFLIIFPITTALLGM 184 Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 +L IQ +F + D+ + P++ +L Sbjct: 185 LLSRRIEIQRDQKIKLQDHLLFKSH------FQAGSMGIAITDVDHQWIKVNPNLCQMLQ 238 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + + + L H +D + + + + + R+ A+D+ + + + Sbjct: 239 YSEPELLELLWADLL--HHSDFNLYSHYYADMLAGETDEFELDIRLIASDDSIVYTHMTV 296 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 N + L +G+ + + QK++ + A Q+ L Sbjct: 297 ACQRNQDKVELVIVGLL-NRSSQKQA--EMAMLASQEQL 332 >gi|30265372|ref|NP_847749.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47530915|ref|YP_022264.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49188183|ref|YP_031436.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|30260050|gb|AAP29235.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47506063|gb|AAT34739.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49182110|gb|AAT57486.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] Length = 892 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 181/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%) Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 K L+ +++ + I L + + ++ A+ + ++ YI + Sbjct: 54 AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287 GF K + S L + I + I F + L + W +I Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173 Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 S + I L+ Y + I T+ + Y F + G+K LI + Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384 + I + + K + ++ V + +LIG Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293 Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417 + +L + + +R D Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 353 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + ++ + + L +I D D + L + Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQ--LTKEGS 409 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 E R + + ++++ I + P N +++ GIA DIT + + + AF D Sbjct: 410 PQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ F L IL+ + N VM +D+D++KKIND LG +GD +L+ + + Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAK 527 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ D++AR G+ F I+L + A A + + P + + E+++T S Sbjct: 528 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG A + +E++KNA++AMY AK G N F + ++ +L A+ Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE I + ++L Sbjct: 648 QQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W +Q + + +N++ +L + ++ +T P + + +ES Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 + + + L +L+ +GI +++DDFGT S L+YL P +T+K + G + Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ SII ++K + +IA+ + E K L CD+IQ ++ P+ + +LL Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886 Query: 954 KER 956 ++ Sbjct: 887 HKK 889 >gi|83311017|ref|YP_421281.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82945858|dbj|BAE50722.1| Predicted signal transduction protein containing a membrane domain [Magnetospirillum magneticum AMB-1] Length = 962 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 164/696 (23%), Positives = 285/696 (40%), Gaps = 42/696 (6%) Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP 342 I +G A IA + + P+ A++ +++ ++ R + Sbjct: 276 RRIESTGWAVIATIPTSVAFAPIRRLEFEIYQDAALASVIIAVLLWLFVRRQLRPLEHAA 335 Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 + + + GG + +L F + Q + Sbjct: 336 GMLNAMATG-----------SRPLSPLPVEGGPEIRQMLDSFNKFHERIKAQ--KQSLRD 382 Query: 403 DGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHI 458 + E+ LA G+ + + D V+ + G + G N L H Sbjct: 383 NAEQLQLAASVFDGTSEAIAITDAEGLIVSVNKPFCRLTGYELEELVGRNPNILKSGRHD 442 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D F + + G E R + + + + I + ++ G I R + IA+D Sbjct: 443 SD---FYAEMWRSITA-TGNWSGEVWNRRKNGEVYPERLTISTIYDAKGQIQRRVAIASD 498 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITEQKK+ E I A D LTG+PNR+ FLD L L + + ++ V++ID+D++K+ Sbjct: 499 ITEQKKAEEIIWHQANHDLLTGLPNRRRFLDLLRKDLARADSLPDMVVGVLLIDLDRFKE 558 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG A+GD +L+ + RRI L D++ L + F + +I + ++ ++ A+R Sbjct: 559 VNDTLGHAIGDQLLLEVARRIRSCLSEKDVIGHLGADEFIVSMIDDLSTTRLEAAVAAIR 618 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 IA P + +TASIG ++ + E+L+N + A+ AK+ G + F S Sbjct: 619 MVIAEPFRSGSDTLHLTASIGITAYPTDGGDMEELLRNVDQAVREAKNGGRDRSCCFTES 678 Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ + DL A+ + + Y PII + IV EAL++W HP+ G +S + Sbjct: 679 MREAGQTRLQLANDLREALSEGQFEVYYQPIIDMPSRAIVKAEALLRWRHPERGFVSPTI 738 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-----------------PIFILIN 799 F+ IAEE +I I ++ + A D I +N Sbjct: 739 FIPIAEETGLICDIGNWVFRQAAATARRLCDSCRYVVGGICRKDDIAGPSTPCRFQIAVN 798 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 + + + + SP I + +E +++G L + R G+ + Sbjct: 799 KSPRQFFSGFSHLEWAEHLRELNISPQCISIEVTEGLLLGQHAEVMERLTKFRAAGMQIA 858 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S +SYL D +K + S + AI +II MA + ++A+ Sbjct: 859 LDDFGTGYSAMSYLKRFDIDYIKIDQSFVRDMTVDSSDRAIAEAIIAMAHRLGMKVVAEG 918 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I E L GCD+ Q A P+ + L+ Sbjct: 919 IETEEQYALLAAAGCDFGQGYLFAKPMPVDQFEALV 954 >gi|289207865|ref|YP_003459931.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] gi|288943496|gb|ADC71195.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] Length = 1301 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 147/627 (23%), Positives = 278/627 (44%), Gaps = 21/627 (3%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400 + L+ + D ++ G + ++ L + Sbjct: 680 VQTRALLLAPLYVRGE-YRGFVGLDRVRQGRTWGAADEHM---ARIVAANLGAALERRRA 735 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIN 459 + R + + D + D+ V P I G + G +L H Sbjct: 736 LTGLRRLAAVFQSTRDGILITDLSARIVAVNPAFTEISGFSEHDALGRNPRFLKSGRH-- 793 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D + +R + + G Q E R + H + + + + G+ Y G+ D+ Sbjct: 794 DAEFYREMWATL--GATGHWQGEVWNRRYTGETHPQWLSLDVVRDEGGEPQYYAGVLTDL 851 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + K+S + A D+LT +PNR L L+ + + V+ +D+D++K + Sbjct: 852 SALKRSQNELEYLAQHDSLTDLPNRSQLQTLLGRALERA-RAERRGLAVLCLDLDRFKTL 910 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +VGD VL+ + RR+ ++L+ PD+L RL G+ F +L S + + A A+ + Sbjct: 911 NDSLGHSVGDRVLLEVARRLADVLESPDLLGRLGGDEFLAVLESADTHELAEERARALLE 970 Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P L + + V ASIG + + + T +++++A+ AMYHAK G + Sbjct: 971 VLQRPFVLDDGQVVYVNASIGVSRFPADGDTVVDLIQHADAAMYHAKALGRETWSFYTED 1030 Query: 699 --SFRSDRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++R+ ++ L A EN EL + + P +RL+D G+EAL++W +I Sbjct: 1031 LTQAAAERLDLENRLRHALNQENDELAVHFQPQVRLVDGRFTGVEALVRWRTGSGESIRP 1090 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAEE ++ + ++L R DQ P + + +N++ L L E + Sbjct: 1091 DRFIPIAEETGLVVPLGEWVLREACRQGRELLDQV-SPDLVMSVNLSPVQLRRGNLVEQV 1149 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +A++ +T + +++ +E+ +M +++ L L+ +G+ + +DDFGT S L+ L Sbjct: 1150 RAILGETGFPARQLEFEITETGLMQQGDQAVTRLKALKSLGVRVAIDDFGTGYSSLAVLQ 1209 Query: 875 YIPFDTVKFNGSLMTG---STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 P D +K + S + G E+ I +II MA+N++ +IA+ + E + L Sbjct: 1210 TFPLDVLKIDRSFVDGVDRMDEEGTDRLIASTIIAMARNLQLEVIAEGVENEAQARFLIE 1269 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 GC++ Q + L +L+ R Sbjct: 1270 HGCEFGQGYLYSPALPPEQLLEWAARR 1296 Score = 82.7 bits (203), Expect = 3e-13, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 22/193 (11%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + R + +G++ + D V P + I G G Sbjct: 261 RLRRERAALAASERRYREVIDQAGNVFFHLDQQGRWVFANPAWSEITGFVLEQTLGRP-- 318 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + ++ DR ++ + R E R+++ + W +R+R + Sbjct: 319 LVDFVVAEDRGRVGELVREVLETGETRGIGEVRLQSREGGIRWCELRLRARQSERDQ-RP 377 Query: 512 YIGIANDITEQKKSLEGILCNAF---------QDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G D+TE+ ++ A +D + L+ L +L L + + Sbjct: 378 FTGTLIDVTERVRNQRIQEIRANILDRIATGERDP--------ALLEDL--VLGLESLNP 427 Query: 563 NLRPTVMVIDIDK 575 +L VM++D D Sbjct: 428 DLHGCVMLVDADG 440 >gi|89093784|ref|ZP_01166730.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp. MED92] gi|89081914|gb|EAR61140.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp. MED92] Length = 1014 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 148/561 (26%), Positives = 278/561 (49%), Gaps = 17/561 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + E + + + ++ +T I G + L Sbjct: 467 KAEREAEVTQQVFESAAEAILIYNPDGKVIT-NSSFNRITGYDDKKARLFALSILK---- 521 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D L + GR Q E R A+ + + + I +S++ + Y+ + +D Sbjct: 522 -DHPEIDATLS-----KTGRWQGESIRRKANGEPLPIWLSISALSSTKTEQSSYVAVFSD 575 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+E K++ + + A DNLT +PNR F DR+ + L +A + + ++ +DID++K+ Sbjct: 576 ISELKEAEQKLEKLAHYDNLTSLPNRTLFYDRIESSLARAARNGK-KTALLFVDIDRFKQ 634 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND G GD +LV RRI ++ D +ARL G+ F +IL + + D A ++ Sbjct: 635 VNDNHGHHTGDQLLVEAARRISAHIRLGDTVARLGGDEFTVILSELDGLDPVQDIARRIQ 694 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696 KS+ P L ++EI +ASIG A + + +LK+A++AMYH K RG N + F Sbjct: 695 KSLRDPFRLDDKEIFSSASIGIAMYPDDGRNAESLLKHADVAMYHVKERGRNDILFFDKA 754 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ R ++++L A+ +L++VY P + EI+ EALI+W HP+ G IS + Sbjct: 755 INEQAEARAQLEDNLKTAINTQQLFMVYQPRFNISGTEILSAEALIRWKHPEQGFISPGD 814 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE +I + ++L + + W + + +N++++ L D+ L ++ Sbjct: 815 FIPLAESCGLIVELGRWVLMQACQAAQEWNENTGQ-NTPVSVNLSARQLHDSSLLIDIEN 873 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 +++T PS ++L +E++V+ + E L +R IG+ L++DDFGT S L YL + Sbjct: 874 ALNQTGLDPSLLELEITETMVIQDMETVISRLEAIRTIGVRLSVDDFGTGYSSLIYLKRL 933 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P TVK + S + + +++++I M+ ++ ++A+ + E + LT CD Sbjct: 934 PVSTVKIDKSFIDDVPGSSGSENLVKAVISMSHSLALNVVAEGVETEAQLSFLTENHCDE 993 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ +A P ++ +L+++ Sbjct: 994 IQGYLLAKPDSAETLQRLMRK 1014 >gi|300693354|ref|YP_003749327.1| modulator of rnase ii stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum PSI07] gi|299075391|emb|CBJ34686.1| putative modulator of Rnase II stability, signal transduction protein eal-ggdef domains (gmr) [Ralstonia solanacearum PSI07] Length = 578 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 149/567 (26%), Positives = 264/567 (46%), Gaps = 23/567 (4%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 V + + D R P A +LG+ ++ G + + ++ D +D Sbjct: 1 MVNALTEGLMVCDAQRRITYANPSAARLLGVRLDTLVGMRLSDVVASAFDEFDTPIREVD 60 Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513 + + +L F +R D + WM P+ G+ + + Sbjct: 61 WPDGEVLADGQPQLNQIFGLRCLDGRTVWMSTNWTPLYAEAGEPMTAVPAARHAQPYAVL 120 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DIT+ +++ + I A D LTG+ NR + DRL L L+ + R +VM +D+ Sbjct: 121 VSLVDITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRN-RSRVSVMFLDL 179 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG GD +L + R+ + D +ARL G+ F ++L S ++ Sbjct: 180 DRFKNVNDTLGHQFGDQLLREVATRLQACAREADTVARLGGDEFVVMLESLDSMGT-RRV 238 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + +I P ++ +E+ + SIG A + +L+ A+ AMY AK RG N+ + Sbjct: 239 AERILAAIGAPFHIDGQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 298 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 +F S R I+ L A + +E Y Y P + + IVG EALI+W+ +G Sbjct: 299 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGAEALIRWNSTDFGR 358 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + +F+ AEE +I I+ ++L + WR +P + + IN++ + +L Sbjct: 359 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ ++++ ++L +E +++ + LL LR +G+SL LDDFGT S LS Sbjct: 418 GMVRGALTRSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSLS 477 Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + S + +R AI R+II MA+ + +A+ + ++ L Sbjct: 478 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETVGQLEFLRE 537 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GCD Q + PL ++ L++E Sbjct: 538 IGCDEYQGYLLTRPLEPAAMHDLVREH 564 >gi|330950876|gb|EGH51136.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 748 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 160/703 (22%), Positives = 297/703 (42%), Gaps = 62/703 (8%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 A L +S Y +V A +IY ++G+ + + Sbjct: 61 AWLRMISSYGDVVLVGQDSPAKAIEANGSGPTLIYVAIRGFRHE----------LLGAML 110 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410 L + + + + AL V + + + ER L Sbjct: 111 LSNSDDATVLSAAQRYALQAQAV------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164 Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 V+ + D + D+ V P I G + G L D Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQC---EDTSRA 221 Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 ++ + + R ++ E D W+ + I P++N G ++ + DITE+K Sbjct: 222 TLDVIREALSHWR-PVEVELLNTRKDGSQFWVELSIVPVANEKGWFTHWVSVQRDITERK 280 Query: 524 ---------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + E + AF D LT + NR ++ LTT Sbjct: 281 ESQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFV 340 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 R TV+ +D+D +K +ND +G GD +L ++ R+ ++ D+LAR+ G+ Sbjct: 341 T-RDSRYERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDE 399 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L+ ++ A + + I + ++I ++ SIG + S E+L++ Sbjct: 400 FAILLMGKDQPETAVKMAERIVSQLHTAIQIEGQDIFISCSIGIVTAGESHTKPEELLRD 459 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY AK +G F S D ++I+ L A+EN + + Y PI E Sbjct: 460 ADVAMYSAKKQGRGRWNIFNASMREAAIDTLVIQNALRQALENKDFLVFYQPIYSGDCEH 519 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG EAL++W+H G IS F+ IAE+L +I + +++ + ++ +WR Q + Sbjct: 520 LVGAEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKQFPHLDL 579 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ K+L + + +I+ T ++++ +ESV + P+ +L ++R++ Sbjct: 580 RLNVNVSGKELSHPGFVDQVTRIIASTGLPAGQLQIEVTESVFLYQPDAIAEILRQIRQL 639 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912 G+ + LDDFGT S L Y+ P D VK + S ++ E+ AI+ SI+ + + ++ Sbjct: 640 GVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAIVSSILSLGRALDLD 699 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I A+ + L +MGC Y Q + P+ ++L ++K Sbjct: 700 ITAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742 >gi|311696941|gb|ADP99814.1| sensory box/GGDEF family protein [marine bacterium HP15] Length = 755 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 147/537 (27%), Positives = 263/537 (48%), Gaps = 14/537 (2%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + + I GL++ + + L I D+ +F +D + FR + Sbjct: 213 FISEKVEDIFGLSADQLSKDAQPLLNLIKDEDKASFLEKVDESRRCMT-PFETSFRACKS 271 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 D W+ R P ++ + + G D+T++K+S I AF D LTG+PNR+ Sbjct: 272 DGTMAWVEARSVPARLADDSMT-WHGYFFDVTDRKQSESEIEKLAFYDPLTGLPNRRLLR 330 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 DRL L S D N ++ ID+D +K IND G GD++LV + R+ ++ D Sbjct: 331 DRLAQALTGSNRDHN-HGALVFIDLDNFKNINDSAGHLTGDELLVQVGERLKNTVRDWDT 389 Query: 609 LARLSGNRFGIIL-----ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 +ARL G+ F +IL + + K+ +R ++ P +L E T T SIG + Sbjct: 390 VARLGGDEFVLILKGFPAEPADAAAKVEKVCEKIRDALNEPYDLNGIEYTGTPSIGITLF 449 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELY 721 + E+L A++AM+ AK G N + + + +R+ ++ DL +A+ ++L Sbjct: 450 YDHDTSLEELLSQADMAMFRAKEDGRNCIRFYDCMMQKKVSERLALESDLRVALRKNQLA 509 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 + Y ++ E VG EAL++W P G +S +EF+ +AEE +I+++ ++LE + Sbjct: 510 VHYQVLVNEK-GEPVGAEALLRWHCPGRGMVSPAEFIPLAEETGLIESVGYWVLEDVLSR 568 Query: 782 IISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 I SW+++ + + +N++++ C + AL+ KT SP +K+ +ES + + Sbjct: 569 IASWKERGGPLSKLQVSVNVSARQFHLPSFCSTVMALLRKTGASPRNLKVEITESALAYD 628 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 E L LR +GI ++LDDFGT S L YL + D +K + + AI Sbjct: 629 LELVEETLRTLRSMGIRISLDDFGTGYSSLGYLKRLSLDELKIDQGFVRDILDDPNDAAI 688 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +I+ +A ++ + +A+ + + ++ L RMGC Q H + PL +L+++ Sbjct: 689 AETILALASALKLSAVAEGVETKGQLERLVRMGCTRFQGYHFSRPLPALEFERLIEQ 745 >gi|299532935|ref|ZP_07046322.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni S44] gi|298719159|gb|EFI60129.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni S44] Length = 900 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 261/566 (46%), Gaps = 15/566 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 ER LA V + + V D ++ +LG + M G R + Sbjct: 327 ASREADERSRLASTVVDNTIEGVVVTDAHSRILSVNHAFTKLLGFSEAEMLGKTPRMFKS 386 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D+ + + S + G Q E R + + + + + ++N + Y+ Sbjct: 387 GRH--DKAFYDAMWASM--HATGHWQGEIWNRRKNGEVFPERMSLSAVKDANDKVTHYVC 442 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI+ +K + + A +D LTG+PNR F L ++LS + + R V++ +ID Sbjct: 443 MFTDISAEKAREQQLEFLAHRDTLTGLPNRSQFTRMLGEAVELSQSTNR-RMAVLLFNID 501 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND G ++GD+VL ++ ++ L+ DI+ RL+G+ ++ S D A Sbjct: 502 RFKDVNDSYGHSIGDEVLRHVSVQMQGALRHGDIIGRLAGDEICVVAQSICGRDSAVDVA 561 Query: 635 IAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + + P + V+ S G + +T+ ++L+ A A+Y AK RG N Sbjct: 562 ERLMAAAGQPWTTPDGLSVVVSVSAGICLYPDHALTADDLLQGAHAAVYGAKARGSNAWC 621 Query: 694 SFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + +R+ ++ L A+E + L Y P I L +VG EAL++W P+ G Sbjct: 622 FFHENMTQAARERLALEARLRRALELGHMRLYYQPQIDLATGRVVGAEALLRWLDPEEGL 681 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS + F+ +AE +I + L++L R WR P + I +N++ L ++ Sbjct: 682 ISPARFIPVAENSGVIGPLGLWVLGEACRQGQQWRAAGL-PDLAIAVNVSLHQFLLTDIA 740 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++K+ + S ++L +E + PE + +L RLR++G+ L +DDFGT S L+ Sbjct: 741 GATAEALNKSGFPASLLELEITEGALAEKPEEALAVLNRLRELGLRLAIDDFGTGYSSLA 800 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 +L P D +K + + + + I S+I + + ++A+ + + + L + Sbjct: 801 HLKRFPLDLLKIDQGFIRDIPHSADDMTISSSVIALGHAMGLKVLAEGVETQEQLSFLQQ 860 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 GCDY Q + PL +LL++ Sbjct: 861 KGCDYFQGYFCSRPLPAEDFTRLLEK 886 Score = 101 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 40/328 (12%), Positives = 99/328 (30%), Gaps = 21/328 (6%) Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 V + ++ G L ++ + + + ++ + A+ Sbjct: 18 LYLCVGMLWLGAQAGVLG-YFDVSLNRQSLRWQIGLFIVWLLATALIALWFM--QRKARA 74 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIV-LYYTYFIIYHGMKGYERAVL-- 339 + ++ + + + L ++G + VL Sbjct: 75 DQRGRETAQELELVVRHAPAGMARVHVGGAEIVWANAKLAGWLGCSVESLRGQDFRVLVP 134 Query: 340 -------------LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 L+ F A T ++ + + V + + V Sbjct: 135 VNDQDDVALQLQRLLDGSTDYFQVLRQCVNAGTGKVTPVLCTTSRVAASGVDGPVALVCV 194 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 +Q + + LA+ GSG+ VW+WD + R+ + ++ +L + Sbjct: 195 LQDLSEMVSARNAMMRSETMLRLALEGSGNGVWEWDALEQRLNFSTGMSALLRYQGQDL- 253 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 ++ +H D R + + L R+ D + W R + + + Sbjct: 254 AREFDFHQRLHPEDAAGARAQAEQALEQ-GSMLVLTARLLCFDGLYRWFRARGQAYKDES 312 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534 G ++R G+ +D T +++ E + Sbjct: 313 GRLIRISGLLSDQTASREADERSRLAST 340 >gi|53804908|ref|YP_113463.1| sensory box protein [Methylococcus capsulatus str. Bath] gi|53758669|gb|AAU92960.1| sensory box protein [Methylococcus capsulatus str. Bath] Length = 810 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 146/577 (25%), Positives = 267/577 (46%), Gaps = 12/577 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ + S D + +D V P + L ++ Sbjct: 237 LALVRDTRLLKRTDTALLRREREFRSLAENSPDSIMRYDRDCRIVYLNPSLENTLLFSAS 296 Query: 444 SMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 M G L H D + + + L + V + + E ++ + IR+ Sbjct: 297 DMIGRTPTEL---HPGDERFETYESKLRAVVATGKAD-EIELLLQGTHKGPRLLHIRLVA 352 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + +G+ + + DITE + I AF D LT +PNR DR+ L +A Sbjct: 353 EHDPDGECTGVLAVGRDITEVDEYRRRIQRLAFFDPLTDLPNRALLNDRIRQCLTDAAAR 412 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + + +M++D+D++K++ND LG + GD +L RR+ ++ D +ARL G+ F I+L Sbjct: 413 GS-QFGLMLLDLDRFKEVNDTLGHSAGDRLLCEAARRLNACVRGYDTVARLGGDEFSILL 471 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + ++ + +E+ V+ SIG + + + K A+LAM Sbjct: 472 PVVRDRGDLRAIAGRILEAFGEAFIIEGKELFVSVSIGIVLHMEGQCDADRLFKQADLAM 531 Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 YHAK +G N+ + + SDR ++ L A+ N EL L Y P + L IVG E Sbjct: 532 YHAKRQGRNNFQFYAEELAVQVSDRTAMEGALRKALGNGELELYYQPQVALPAGRIVGAE 591 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W HP+ G ++ F+ IAEE +I+ + ++L R + W P + +N Sbjct: 592 ALLRWRHPQEGIMTPDRFIPIAEETGLIRDLGHWVLTTACRRAVYWHRTV-DSPFKVAVN 650 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++++ + N+L +Q ++ T P ++L +ES+++GN L L +G +++ Sbjct: 651 LSTRQFVRNDLPGELQRIVQDTGCRPEWLELEITESLLLGNDAEVGAALEELHDMGFAIS 710 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S + G + +++ ++++II +A ++ +IA+ Sbjct: 711 IDDFGTGYSALSYLNRFPLDQIKIDRSFIQGFPADREKVELVKAIISIAGALQLEVIAEG 770 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + + L GC Q PL + +LL Sbjct: 771 VETSHQAEYLHAQGCRLAQGHLFGRPLPQDRFERLLA 807 Score = 55.0 bits (131), Expect = 7e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 5/126 (3%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDR--VTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + R + + + + + V P + + G G + + D Sbjct: 9 ELVRPAGLLPAAATCILEQHPDGHVTVVHADPGMEDMFGAEPGRLL-HAAGIEASMWPED 67 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R ++ L+ EF V W+ + P S+G I R+ G D+T Sbjct: 68 RRRAEPRQETAQRGPM-PLRTEFPVEHPVRGPRWLELSAVPEPLSDGAI-RWHGFLTDVT 125 Query: 521 EQKKSL 526 E++++ Sbjct: 126 ERRQAE 131 >gi|313682364|ref|YP_004060102.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313155224|gb|ADR33902.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 780 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 175/754 (23%), Positives = 318/754 (42%), Gaps = 41/754 (5%) Query: 219 IPTFAMAWVVLGY--ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY--LH 274 + A ++L Y DF FL V + + IW L + + L Sbjct: 39 LFFGAFIVLLLFYKTNLTDFVFLWFSVVIVTLIWRIW----------LLTDYRRNFHRLD 88 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + W + Y+ +S F P +L + + Sbjct: 89 HSIWERRFKYVMYSSALIWGSAAFFIFQTPD----YLHHFFIIFLLTGIASVASGTLASL 144 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA-- 392 ++ +++L I+ + + + ++ A LV I ++ + + Sbjct: 145 LGVTIVFLSFLLTPIFIVMFFHGEFEVQMMGMLVLAFYMLLVSAAKRINSNIMNALTSKI 204 Query: 393 -TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + ER + ++ +D + T ++ L + +M G Sbjct: 205 LHQKAANALALSEERFETIFKEAPIGIFYYDTDLIVMETNNEMLQALQIPRETMIGLDLK 264 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L L+ V ++G + + + + W+ +R P+ +S I+ Sbjct: 265 ALSD------TRLSDALNVSVHGQKGFYEGPYTSTFVELK-MWVSLRTSPIYDSERRIIG 317 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 +GI +DITE+ + E I A+ D LT IPNR DR+ L +L +M + Sbjct: 318 GVGIVSDITERMNAEEKIKHQAYFDALTNIPNRALLKDRVDQSLAHYRRYGSL-IAIMFL 376 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----- 626 D+D +K IND LG +GD +L+ R+ + + D +ARL G+ F I+L N Sbjct: 377 DLDHFKSINDSLGHYIGDLLLIETANRLKHICREGDTVARLGGDEFIILLNELGNDPMVA 436 Query: 627 SLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + A + + + P ++ I+ ++SIG +S TS ++LK A+ AMY AK Sbjct: 437 ATRAETVAEKIHEVFSAPFDIGLAEPISTSSSIGIVLVSSKDQTSDDLLKFADTAMYQAK 496 Query: 686 HRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N ++ + + + + L AV+N+EL L Y P+I + + I+G EAL++ Sbjct: 497 KEGRNTTRFYQEEMDQWIKKRLFLENALRSAVKNNELELYYQPVIEMKTKLIIGAEALLR 556 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI--FILINIA 801 W+HP+ G I E + IAEE +I I ++L + WR + I +N++ Sbjct: 557 WNHPELGLIMPDEMIEIAEESGLIVGIGEWVLREACTQFVRWRAENLRQSHIDRIAVNVS 616 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + ++ + + +++T PS ++L +ES V+ N + + RLR GI +++D Sbjct: 617 AVQFRQSDFVDKVIRTVAETGLVPSMLELELTESTVIDNIDIVIDKMNRLRHAGIGISMD 676 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L YL +PF T+K + S + A++ +I+ MA + +IA+ + Sbjct: 677 DFGTGYSSLGYLKKLPFTTLKIDRSFVRDIVSDTDDAALVETILSMASIFKFDVIAEGVE 736 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 K L GC Y Q + P+ +LL Sbjct: 737 TIEQFKFLESHGCQYFQGYLCSKPVQVKHFEELL 770 >gi|71282087|ref|YP_269787.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71147827|gb|AAZ28300.1| sensory box/GGDEF/EAL/CBS domain protein [Colwellia psychrerythraea 34H] Length = 858 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 143/587 (24%), Positives = 276/587 (47%), Gaps = 18/587 (3%) Query: 381 LIGFTVIQHVLATGYFSQ----GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPD 433 ++ + +V Q + + +A + S D + D ++ P Sbjct: 265 IMSDIELAYVEELHQIVQQRDIALRESKKHLLVAEKIIEASLDGIMITDEQGTIISVNPA 324 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 + G + G + H +D F L + + G Q E + +++ Sbjct: 325 FTRVTGYKEAEVLGLNSKILSSGRHTSD---FYQQLWLCILEQ-GVWQGEIWNKRKNSEI 380 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 + + I +S + + I +DI+E+K + + I AF D LT +PNR+ F DR+ Sbjct: 381 YPQWLTIIEISEGVDNNKVFAAIFSDISERKLAEKRIENLAFYDELTQLPNRRLFFDRVD 440 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 L ++ +N + + ID+D +K++ND G +GD +L S +R+ E K D +AR+ Sbjct: 441 MALAIAHRKNN-KMALFFIDLDYFKEVNDNYGHRIGDLLLRSFAKRLTESSKEGDTVARI 499 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F ++L I + + + P ++ + +T SIG A + E Sbjct: 500 GGDEFTLLLTDMREVDHICKACNRIVEKLRQPYHIEGHALNITTSIGIAVYPEDGTNEEE 559 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730 ++KNA++AMY AK G N + F + + I+ L LA+ ++EL L Y I Sbjct: 560 LMKNADIAMYRAKDIGRNSFQLFTPAMNAHSQERSLIQSHLRLALVHNELELNYQAQIHG 619 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 + +++G+EAL++W +P G +S ++F+ +AEEL I I+ ++LE + W DQ Sbjct: 620 VTGKVMGVEALLRWYNPILGQVSPAQFIPMAEELGFIAEIDHWVLEHACKQRKLWLDQGL 679 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 I +NI++ L ++++++++ +++ +E + +++ +L + Sbjct: 680 DCG-RIAVNISALHFHQGNLVASVESVLAQSQLPAELLEVEITEGCFIKQMDKATSILKQ 738 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKN 908 L+K+G+ + LDDFGT S LSYL +P DT+K + S + I +II +A+N Sbjct: 739 LKKMGVKVALDDFGTGFSSLSYLTSLPIDTLKIDASFIAKLPHNFRESQITSAIITLAQN 798 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + I+A+ + E L GC+ +Q P+ ++ ++++ Sbjct: 799 LNLDIVAEGVETEAQKIFLIERGCEIMQGYFYNKPVCAKNLPRVIQS 845 >gi|39933854|ref|NP_946130.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|39647701|emb|CAE26221.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Rhodopseudomonas palustris CGA009] Length = 904 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 147/619 (23%), Positives = 264/619 (42%), Gaps = 20/619 (3%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 I++ + + R ++ +++ +++ + Q + + D Sbjct: 295 IVMVVTTTTEDALASWRTQTKLMVSVAAVSALVVTVILLLIIHQIGKHHRATQRKLQLDK 354 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHINDRD 462 +R A+ + +D V + GL+ + +R+ L H Sbjct: 355 QRLDTAINNMSQGLLLFDAQARLVICNQRYMEMYGLSPDVVKPGCSLRDVLE--HRKSTG 412 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + +D RL + + P+ ++ D TE+ Sbjct: 413 SLGGNVDKITTDLIDRLSSQRVSEIHSIHDRSIEFSSVPVPGG-----GWVITHEDATER 467 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K+ E I A D+LT +PNR F RL L ++ ++ IDID++K IND Sbjct: 468 KRYDERISYLAHFDSLTDLPNRTMFRQRLENELQRASR--GAPFALLYIDIDEFKSINDT 525 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD++L + R+ + ++ D +ARL G+ F II I + + + + +SI Sbjct: 526 LGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVDRIYESIR 585 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701 +P L +++ ASIG A +++KNA+LAMY AK G F Sbjct: 586 LPYQCLGHQLSTDASIGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFRFFEPEMDAV 645 Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R ++ DL A+ + + Y P + L I G EAL++W HP G IS +EF+ I Sbjct: 646 AKTRRQLEFDLRQAIGDRGFEVHYQPQVDLSSGAITGCEALLRWRHPTRGMISPAEFIPI 705 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE+ +I I + L + +W I + +NI+ L + +++ Sbjct: 706 AEDTGLINEIGAWTLATACSEAATW-----DADITLAVNISPVQFRQPSLALLVASVLGA 760 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 R++L +E+V++ + + + L +LR +G+ ++LDDFGT S LSYL PFD Sbjct: 761 AGLPAERLELEVTEAVLIHDDDAALSTLTQLRALGVRISLDDFGTGYSSLSYLQRFPFDK 820 Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + G E AI+++++ +A T A+ + + L+ +GC +Q Sbjct: 821 IKIDRSFIDGIDTTEGSTAIVQAVVNIAAARRMTTTAEGVETARQREILSTLGCTQMQGW 880 Query: 939 HVASPLGFNSILKLLKERF 957 + + + KLL Sbjct: 881 LFSPAVPAAAFRKLLTSHL 899 >gi|315127811|ref|YP_004069814.1| hypothetical protein PSM_A2750 [Pseudoalteromonas sp. SM9913] gi|315016325|gb|ADT69663.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 847 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 157/565 (27%), Positives = 277/565 (49%), Gaps = 15/565 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP- 454 + LA + S D + D + P + G + G N L Sbjct: 278 ALQHSQRNLFLANKIIDSSLDGIMITDSNGVIMQVNPAFTHLTGYKEYEVIGKRPNMLSS 337 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D++ + + DS + G Q E R + + I + + + Y Sbjct: 338 GRH--DKNFYIKMWDSLA--KTGVWQGEIHNRKKSGDIYIEWLSIIEIKEPSHSEVIYAA 393 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +DITE+K + E ++ A+ D LTG+PNR+ F DRL+ L + D + VM ID+D Sbjct: 394 IFSDITERKSAEEKVVQLAYFDELTGLPNRRLFNDRLSMALASAHRDKQM-LAVMFIDLD 452 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K++ND LG GD +L ++ RI L D LARL G+ F I+L NN A Sbjct: 453 RFKEVNDSLGHNAGDTLLKLVSERIINTLNEGDTLARLGGDEF-IVLCEINNVEGAITLA 511 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 ++ + P L E+ VTASIG A + + S +LK+A++AMY +K G N + Sbjct: 512 ESILNHLNTPFKLEGFEVGVTASIGAAVYPDDGLDSETLLKHADIAMYRSKDVGRNSFQL 571 Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F+ S +R+ + A+EN E L + P L I+G EAL++W P G I Sbjct: 572 FQPSMNARSLERLAMMSRFQHALENDEFELYFQPKQCLKTGLIMGAEALLRWHDPDLGTI 631 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEEL ++ ++L+++ + +++ W+ Q + IN+++ L +L + Sbjct: 632 SPAQFIPLAEELGLVVRLDLWVINQAGKELTLWQAQGIDAG-RLAINVSACHLSQGKLAD 690 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++A++++ S +++ +ES + + +++ L +L+ +G+ + LDDFGT S LSY Sbjct: 691 NIKAMLTRYQLPGSLLEIELTESSFISSFSQAKEQLQQLKALGVHIALDDFGTGYSALSY 750 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +PF+T+K + S + ++ I+ +II MA ++ ++A+ + L + Sbjct: 751 LTKLPFNTLKIDASFIAKIPDEYGNSQIVAAIIAMATSLGLDVVAEGVEHASQEAHLVEI 810 Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955 GC+ IQ + PL + + Sbjct: 811 GCNAIQGYYYCHPLTQQQWIAFYNQ 835 >gi|229094411|ref|ZP_04225483.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] gi|228688948|gb|EEL42775.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] Length = 887 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 173/870 (19%), Positives = 353/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 30 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 84 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 85 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 138 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 + + +V L Y D FL +NL L + L S+L+++ Y + Sbjct: 139 SSTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALLLYATTDAIYAY 198 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 199 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 258 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 259 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 318 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 319 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 378 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 379 --YYSLTYEEDLEEIIHAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 433 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 434 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 492 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 493 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMTTPNMKLARLAGDEFTILIENYNKRPD 552 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 553 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 612 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 613 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 672 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 673 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 731 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 732 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 791 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E + Sbjct: 792 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 851 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL +K L++ Sbjct: 852 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 881 >gi|237748829|ref|ZP_04579309.1| sensory box sensor/GGDEF/EAL domain-containing protein [Oxalobacter formigenes OXCC13] gi|229380191|gb|EEO30282.1| sensory box sensor/GGDEF/EAL domain-containing protein [Oxalobacter formigenes OXCC13] Length = 1076 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 146/561 (26%), Positives = 259/561 (46%), Gaps = 12/561 (2%) Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 D E+ LA S + + + + P I G + + G L Sbjct: 516 EDEEKLELAALVYRNSSEAILISNADNHILAVNPAFEKITGYTAAEVIGRDPKLLSS-GR 574 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D+ ++ + D+ +G + E R + + + + I + N + + Y+ ++ND Sbjct: 575 QDKAFYKAMWDALDE--KGYWRGELWNRRKNGESYASWLTINVVYNEDRSVRYYVELSND 632 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 TE+K++ + I A D LT +PNR+ +DR+ L + ++ +D+D +K Sbjct: 633 FTEKKEAEDMIWRQANFDFLTNLPNRRMLMDRMKQELVKVNQSGK-KLALLFLDLDNFKD 691 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD +L+ + +R+ + ++ D ++RL G+ F IIL ++ + A ++ Sbjct: 692 INDTLGHDAGDHLLLDVAKRLKDCVREFDTVSRLGGDEFAIILTELSDLPTMEKIAHSIL 751 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 +S+A P L VT SIG + +++NA+ A+Y AK G N + F S Sbjct: 752 RSLAQPYQLGSEIAYVTGSIGITVYPDDGTDIDTLMRNADQALYAAKLAGRNRMSYFTAS 811 Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +R+ + D+ +A+ + ++Y PI+ + I EALI+W HP G IS +E Sbjct: 812 MQAAAQNRIRLANDMRIAINEHQFEMLYQPIVEIETGRIQKAEALIRWHHPVRGIISPTE 871 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE I I+ + +AR++ WR+ P + I NI+ + Sbjct: 872 FIFIAEETGQILTISDWAFGEVARELSRWREHL-FPDLQISFNISPIVFQNKNDYSDWFE 930 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ K S I + +E V++ + + L + G+ + LDDFGT S LSYL Sbjct: 931 VLEKLNVPGSSIVMEITEGVLIVSNTQVLDRLAEFHQYGMEVALDDFGTGYSSLSYLKKF 990 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + + + K +A+ +II MA ++ +IA+ + + L GC+Y Sbjct: 991 PIDYLKIDQAFVRHIENEPKDMALCEAIIVMAHKLDMKVIAEGVQDDGQRLLLAGAGCNY 1050 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + PL KLL+ Sbjct: 1051 GQGYLFSEPLTAAEFEKLLES 1071 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 6/209 (2%) Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 +I G A L +I I + + L +Q LV + L+ Sbjct: 324 VITLLPLGAYNADLFYWGTKVIGISIALMALFFLAILFMVRLQEIRNQLLVNLEKLVEIR 383 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + R D+VW + + +GL+ + Sbjct: 384 T----DDLNKVNVVLTQSEARLKSVFENIPDLVWMKNSAGVYLACNQAYKDYVGLSDEHI 439 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G ++ + F + + + ++ A + + P+ Sbjct: 440 IGKTD--FDIFSHDEAELFEEQDKRILKEGKPLVIEQWGTYALSGNRVFFDVIKAPVRTP 497 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAF 534 +G+++ +GI DIT +K+ E + A Sbjct: 498 DGELVGVLGIGRDITRRKEDEEKLELAAL 526 >gi|183222770|ref|YP_001840766.1| hypothetical protein LEPBI_I3429 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912802|ref|YP_001964357.1| signal transduction protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777478|gb|ABZ95779.1| Signal transduction protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781192|gb|ABZ99490.1| Hypothetical protein LEPBI_I3429 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 818 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 150/586 (25%), Positives = 270/586 (46%), Gaps = 25/586 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIV---RDRVTTTPD----- 433 + + + + + + + S V + + + V + Sbjct: 236 WATFRDITDRKRSQEQVKNQKAFYEFILDNLDSDIAVLNSNFEYEYTNPVFLSNREIRKW 295 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 + + + + R +++E ++ +++ Sbjct: 296 LYKKTDVDLAEKLDLPQEFYER---------RKKFLDIAAKNNEIVEFEELIQDQNDKVT 346 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 +++ + P+ +S + R+I DITE+K S E I A+ D LTG+ NR F+D Sbjct: 347 YLLRKYIPIDDSETNQKRFISFGVDITERKLSEERITYLAYYDALTGLANRTLFIDHANQ 406 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L + + L DID +K IND LG GD +L + R+ ++ D +AR Sbjct: 407 ALKNHKSTETL-LAFYFFDIDNFKFINDSLGHTKGDILLQMVGARLKRVMTEVDTVARFG 465 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F I+ + +N A+FA + ++ P +++ R++ T S+G A + +TS+E+ Sbjct: 466 GDEFAILKVDVSNKSSAAEFAQKILDILSQPFHIMGRDLFTTISMGIALSPNDGVTSAEL 525 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 LKN+++AMY AK G N+ + + R+ I+ L A++N EL L + P I + Sbjct: 526 LKNSDMAMYKAKELGRNNYKFYTNELILRSEKRLYIENSLRKAIQNEELLLFFQPKISTI 585 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 ++ G EALI+W HP+ G + EF+ +AE+ +I+ I ++LE R W ++ Sbjct: 586 TNQVCGAEALIRWKHPERGWVPPIEFIPVAEDSGIIERIGDWVLEEACRLKKQWSEKNL- 644 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 P + IN++ K L +QA I + +P I+L +ES +M NPE+S L Sbjct: 645 PSFPLSINVSGKQLARANWSHRVQATILQYGINPEEIELELTESSIMENPEKSIEAFEYL 704 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNI 909 ++GI +++DDFGT S LSYL I D +K + S + E AI ++II MA ++ Sbjct: 705 SELGIKVSIDDFGTGYSSLSYLKKINADVIKIDRSFVVDLELNEDDRAICKAIINMAHSL 764 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + L +GC IQ + PL + + +++ Sbjct: 765 GLEVIAEGVENPAQRDLLHDLGCHMIQGYLYSKPLPEDEFVVFVQK 810 >gi|196036537|ref|ZP_03103932.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|228949069|ref|ZP_04111341.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195990870|gb|EDX54843.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|228810642|gb|EEM56991.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 735 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L + E R + + ++++ I + P N +++ G Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG +GD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSNKDVWRLLHKK 732 >gi|163942989|ref|YP_001647873.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] gi|163865186|gb|ABY46245.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] Length = 909 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 178/857 (20%), Positives = 345/857 (40%), Gaps = 34/857 (3%) Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIY 174 S F L + R+ D F ++P F + L I Sbjct: 65 SRLFWITLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSD--FFYL------LFLIS 113 Query: 175 LWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLG 230 Y+ L + I + A F +Y++ ++ I T + +V L Sbjct: 114 FAFAFLYEIIYGRDLLEQLFTICDICIIVTAQFTLSYYLLIERTIHIFTTSYIDMFVQLT 173 Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITF 287 Y D FL +NL L + L S+LI++ Y + + + T Sbjct: 174 YPMADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAYIKYFQPEHSMFTV 233 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 + + + +L + + + + ++ I + Sbjct: 234 APLYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISVVMLIVFILVENVF 293 Query: 348 F-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL----ATGYFSQGIFS 402 I IGL + L ++ L+L + + + + ++ Sbjct: 294 APIVVIGLMVTFAFVLIRHMLVRRQNKILLLAQMQFSLELEKQIELRTEDLVEQKNELYH 353 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + + D ++ D+ + + T+LG + + + ++ D + Sbjct: 354 NQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLE 411 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 T + + E R + +++ + P+ I + DITE Sbjct: 412 EIITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGAYLMIKDITES 468 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K+ E I A+ D LT + NR+SF +L + + VM +D+D++K IND Sbjct: 469 KQQQEQINFLAYHDTLTELANRRSFHLQLEQAIVRAKLSKRP-FAVMFLDLDRFKVINDT 527 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD +L+++ +R+ + LARL+G+ F I++ + A + S+ Sbjct: 528 LGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRDVQKIADMIVLSMN 587 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P + + + ++ SIG A + + +L++A++AMY K++G N + ++ Sbjct: 588 EPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGKNGSSLYTKELYKK 647 Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 I++DL LA+ N E +LVY P + + +I+G EALI+W HP G IS EF+ I Sbjct: 648 MERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHPLLGEISPCEFIPI 707 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 EE + + ++L + W+ + + +N+++K+ N+L E + ++ Sbjct: 708 VEETPQVIPLGHWVLRESCLQLKIWQS-FGYTNLKMSVNLSAKEFQQNQLIENISRILKD 766 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P + L +E + M + + + L +L++ GI ++DDFGT S L+YL P DT Sbjct: 767 VKIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDT 826 Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + AI+ +I+ +A + +++A+ I E +K L + C Y+Q Sbjct: 827 LKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGY 886 Query: 939 HVASPLGFNSILKLLKE 955 + + PL +K L++ Sbjct: 887 YFSKPLTSKQFIKFLQK 903 >gi|56419998|ref|YP_147316.1| hypothetical protein GK1463 [Geobacillus kaustophilus HTA426] gi|56379840|dbj|BAD75748.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 716 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 148/576 (25%), Positives = 264/576 (45%), Gaps = 16/576 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V++ + R L V S D V + R+ P Sbjct: 146 LCVLRRQAEESGLQARLAEAERRLQLIVEHSNDYVLIFSPNRELSYIPPSWKRKTN---K 202 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + L ++H +D L + EFR + ++ WM + + + Sbjct: 203 RLPVSYEEVLTFVHPDDAPVVAQKLAELYDTYETQ-SAEFRKQGEKGEWVWMEAQGKAII 261 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G + I +I+E+K+ E + A+ D+LTGI NR F + ++ Sbjct: 262 DEAGTLDCVIVTVKNISERKRYEEKLRQLAYFDSLTGIANRSYFERHIHELIA-----SQ 316 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D DK+K IND GD L +R+ L+ D AR+ G+ F ++L + Sbjct: 317 TPFALCYLDFDKFKWINDHFSHQAGDYFLREAVKRVERALRPGDFFARIGGDEFVLLLPN 376 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + S P ++ I T SIG A + +++K A+ A+Y Sbjct: 377 ITKTE-MTALAEQLVSSFHEPFYYEKQLIQSTLSIGIAFFPKDSDRIEQVMKYADQALYE 435 Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 K RG N +R + R I++DL A+ +LYL Y P ++L + +G+EAL++ Sbjct: 436 VKERGRNGYAFYRPTEHRHAV--IEQDLPFAIMRGQLYLCYQPKVQLAKGKAMGVEALLR 493 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G I +F+ +AEE I I L++LE+ +R + W + P + + +N++ Sbjct: 494 WRHPSLGEIPPLDFIPLAEESGFIFEITLWVLEQASRQVKEWERKF--PGLKLAVNLSPF 551 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L EL E ++ ++ +T SP R+ L +ES +M N E + +L L+++G+ +DDF Sbjct: 552 LLNRPELIEHVKRILRETGLSPDRLILEVTESGLMENIETGQHILTELQRLGVQAAIDDF 611 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+Y+ +P +K + S + G E I+ +II +AK+++ ++A+ + E Sbjct: 612 GTGFSSLAYIRNLPVSLLKIDRSFIEGIAENSKDATIVDTIIHLAKSLDIEVLAEGVESE 671 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L++M CDY Q + + L + + L+E Sbjct: 672 SQVALLSQMHCDYAQGFYFSRSLEAEKLQQWLEEYN 707 >gi|83593741|ref|YP_427493.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83576655|gb|ABC23206.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 1301 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 134/596 (22%), Positives = 252/596 (42%), Gaps = 18/596 (3%) Query: 372 VGGLVLIVILIGFTV-----IQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDI 423 G + I + + + ++ Q + LA S + ++ D+ Sbjct: 709 TGESLWINLTVSLVRDIHNAPAYFISVVENIQSRKEAELQLLLASAVFSNSMEGIFVTDL 768 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + P + I + + G L +R+ + + + G + E Sbjct: 769 KGSILAVNPAFSQITLYEAAEVLGRNARILQS-GRQNREFYVALWQDVLT--IGSWRGEI 825 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R D + + I + N G++ YIGI +D++ K S A D LTG+PN Sbjct: 826 WNRRRDGEVFPEWLSISSVRNHQGEVTNYIGIFSDLSRIKHSEAKFHHLAHHDPLTGLPN 885 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R RL ++ + R V+ +D+D++K IND LG GD +L +L R+ L Sbjct: 886 RLLLRSRLDHAIERARRTGG-RCAVLFLDLDRFKMINDSLGHRAGDTLLRTLGARLTACL 944 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFAS 662 LARL G+ F ++ + + A+ M + + P L E+ + S+G + Sbjct: 945 GDTGTLARLGGDEFVAVIEDIDGIPAVGTIALTMLERLREPCRLSEGPEVCIGGSVGISL 1004 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSEL 720 + +L++A+ A+ K GG + + + + L A+E + Sbjct: 1005 FPEDGDNPDTLLQHADTALGQVKGAGGGAYGFYTRTLTERISARLGLEAGLRHALEQGDF 1064 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P+I L E+ G+EAL++W I F+ +AE+ +I + ++L R Sbjct: 1065 LLHYQPLIALGTGEVEGVEALVRWAGGDGLLIPPDRFIPLAEDTGLIVPLGEWVLGEACR 1124 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + WR Q MP + +N++ + D+ + ++ ++ +T S ++L +ES +M Sbjct: 1125 TMQRWRSQ-GMPLTVLAVNLSPRQFRDHAIPALVRRVLEQTGLPASVLELEITESAIMEQ 1183 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--I 898 + + L+ +G+ L +DDFGT S L+ L P D +K + S + A I Sbjct: 1184 GAAAEAQMTGLKHLGVRLAIDDFGTGYSSLANLRRFPIDKIKIDQSFVRDIPRDAAAEEI 1243 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +II M + ++ ++A+ + + L+R CD Q + P+ ++ K L Sbjct: 1244 TATIIAMGRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYLFSRPITAAALEKWLA 1299 Score = 82.7 bits (203), Expect = 3e-13, Method: Composition-based stats. Identities = 12/129 (9%), Positives = 40/129 (31%), Gaps = 2/129 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + R + + D + + I+G + ++ H + Sbjct: 622 LRESEARFRATFEQAAVGIAHLDPDGHWLRVNHKLCDIVGYPPDELLT--LSFQDITHPD 679 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D +++ + + E R + W+ + + + + + +I + +I Sbjct: 680 DLRADLRQMEALLAGQIDTYTIEKRYIRKTGESLWINLTVSLVRDIHNAPAYFISVVENI 739 Query: 520 TEQKKSLEG 528 +K++ Sbjct: 740 QSRKEAELQ 748 >gi|298530997|ref|ZP_07018398.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfonatronospira thiodismutans ASO3-1] gi|298509020|gb|EFI32925.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfonatronospira thiodismutans ASO3-1] Length = 721 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 134/566 (23%), Positives = 256/566 (45%), Gaps = 13/566 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPIRNWLPY 455 ++ + ++ S + D +T + ++G + + ++L + Sbjct: 152 TRQLQESEKKYRTLFETSKSAMLLVDTESGLLTMANKEFCDLIGYTRQEVENSL-HFLNF 210 Query: 456 IHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H +D + R D+ ++E + + + + ++ + + + Sbjct: 211 VHPDDHERARKYFDTSRQDAGTAPAEFEIKGLTREEKKLHLYYKVAAIP----EWNSLVI 266 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 D+T++++ E + F ++LTG+PN + F +RL + D V+ ID+D Sbjct: 267 SIFDLTDKRRVEEELRQRTFYNSLTGLPNSELFKNRLKKSIQTRQEDQGYFFAVIFIDLD 326 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND LG GD+++ + +R+ +K D +A G+ FG+++ +E+ A Sbjct: 327 RFKLVNDSLGHQKGDELISLMAKRLERGVKKRDTVAHFGGDDFGLLIEAEDLPEAALR-A 385 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 ++ P + EI T S+G + E+ ++A+ A++ AK G + Sbjct: 386 EKIKDQFVEPFEIAGNEIYTTCSMGIVVSSQDYSEPEEIFRDADTALHRAKSTGPGNYVV 445 Query: 695 FRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ E L Y PI L D I G EALI+W HP+ G + Sbjct: 446 FDPQMHAQVSDLLQLETELRKAIQQKEFVLYYQPIYNLADLRITGFEALIRWIHPEKGMV 505 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 + F+ IAEE +I + ++L+ R W + + IN++ D L Sbjct: 506 PPNVFIPIAEETELINPLGEWILDTACRQARKWNK--GGRELTMNINLSGVQFKDKNLIN 563 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ K SP I L +ESVVMG+ E S L +++K+G L++DDFGT S L+Y Sbjct: 564 VLENTFRKNSISPLHINLELTESVVMGDAEESINTLNKIKKLGARLSIDDFGTGYSSLNY 623 Query: 873 LGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 L P D +K + S + + ++R+I+ M +++ +A+ I +K L + Sbjct: 624 LQKFPIDNLKIDRSFINTMETQSGQELVRAILAMTQSLGIKAVAEGIETWEQVKLLQELN 683 Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957 C+ Q H + PL S LL+E Sbjct: 684 CNLGQGYHFSKPLDEESADALLQEHN 709 >gi|119897858|ref|YP_933071.1| GGDEF/EAL-domain-containing protein [Azoarcus sp. BH72] gi|119670271|emb|CAL94184.1| GGDEF/EAL-domain containing protein [Azoarcus sp. BH72] Length = 1090 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 147/652 (22%), Positives = 278/652 (42%), Gaps = 19/652 (2%) Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 A AR S + ++ L I + + L ++ Sbjct: 450 ADWARGLPVSRSALQFAGRQWSLVQRAGP-EYLGAIRSWAAWSSIAIGLVSVGILGAFLL 508 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 G I LI + A Q + A + W+ D Sbjct: 509 IT--TGNTRRIAALIERRTTELASAGSKLRQQQAALA----QAQRVARLGSWETDNELCE 562 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 V + ++ +L G + G + + + DR L+ + RV+A Sbjct: 563 VRCSAELHRVLERPEGRL-GTMEELMDAVIPLDRPALLGALEQVARAP-DHATLDCRVQA 620 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + I +G + R G D+T +++ I A D+LTG+PNR ++ Sbjct: 621 RPTRIVQFQIES---EWQDGVLERIRGTVQDVTSAREAEAHIQYLAHYDSLTGLPNRSAW 677 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +++ + L L+ ++ V+ +D+D +K +ND LG VGD +L ++ +R+ L+ D Sbjct: 678 MNQARSALSLAQRHQHI-LAVLFLDLDNFKTVNDSLGHPVGDRLLAAVAQRLAHCLREED 736 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 ARL G+ F +L + A A M ++A P+ + + E+ + SIG + + S Sbjct: 737 SFARLGGDEFVALLPRVTRAEDAAAVARKMLDALATPVVIDDHELAPSVSIGISLFPSDG 796 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYH 725 +LK+A+ AMY AK G N+ + F +R++++ L A+E +EL L Y Sbjct: 797 TDVDTLLKHADTAMYGAKEVGRNNFQFFVPEMNTRALERLLLENALRRAIERNELTLHYQ 856 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + + G EAL++W HP +G + ++F+ IAE+ +I + ++L R + W Sbjct: 857 PQVAATSDRPNGCEALVRWQHPDFGLVPPAQFIPIAEDSGLIVPLGEWVLREACRQQVKW 916 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + + +NI++ + + + ++++T +P RI+L +ES +M + Sbjct: 917 ARSGLH--LMVGVNISALQFRRADFVDSVVQVLAETGANPERIELEITESALMDASDALS 974 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903 L L +G+SL LDDFGT S L+YL +P +K + S + + A+ + + Sbjct: 975 RRLRELANMGLSLALDDFGTGYSSLAYLKRLPIGRLKIDRSFVKDLPGDPEDAAVTAATL 1034 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +A+++ ++A+ + L GC +Q + PL + ++ Sbjct: 1035 SLARDLGLEVVAEGVETVAQRDFLVARGCHTLQGYLYSRPLDVAAFEAWMQA 1086 >gi|302879551|ref|YP_003848115.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302582340|gb|ADL56351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 725 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 154/701 (21%), Positives = 293/701 (41%), Gaps = 42/701 (5%) Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-GYERAVLL---- 340 + I ++ + + +++ M G A Sbjct: 23 VVIMSLALFIRLAIAPVDAGLQYVTFFPAITLAAIFWGCRAGLLAMAMGVGFATYFFIPP 82 Query: 341 ----------IPAW--ILIFIWFIGLWMAITKRLDN---DIIQPALVGGLVLIVILIGFT 385 I AW ++ + + + +I ++ A + V + Sbjct: 83 FYSFENEGLKIMAWSNLVFLVDGLLVSFSIEAMHRYRKKSEVELAEIKLAHSQVSTLNSE 142 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + Q + + A + D + D + I G +S Sbjct: 143 LDEMLHKQRETEQELLIS----ATAFE-AQDGIMITDSKGVILRVNQAFTDITGYSSEEA 197 Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G R H D F + + G+ E R + + + + I + + Sbjct: 198 VGQTPRLLKSGRHDAD---FYAAMWQCIKN-TGQWSGEIWDRRKNGEIYPKWLTITEVKS 253 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G ++ Y+ DIT +K S + I AF D LT +PNR+ LDRL + S D Sbjct: 254 FDGSVVHYVSSQVDITARKASEDRIHNLAFYDPLTQLPNRRLLLDRLRHSVSFSLRDGR- 312 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 +M ID+DK+KKIND LG +GD +L + R ++ D +ARL G+ F ++L Sbjct: 313 HVALMFIDLDKFKKINDTLGHDIGDLLLKQVAERTLTCVRTCDTVARLGGDEFVVLLDGL 372 Query: 625 N-----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 + + + ++ +L E ASIG A + T+ ++LK A++ Sbjct: 373 AGNLHEAAAQAKQIGRKIIDTLNQSYDLAGHEYQSGASIGIALFDEHCQTAEDLLKQADI 432 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G N + F S +++D A+ + Y+ Y P+I + + G Sbjct: 433 AMYQAKKAGRNTLRFFDPEMQASILARVALEKDFKDALLQEQFYICYQPVIS-REGRVAG 491 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W H G +S ++F+ +AEE +I + ++L+ R + W + + + I Sbjct: 492 AEALVRWRHSIRGIVSPADFIPLAEETGLIVPLGNWVLKTACRQLSDWSSRDDTRDLTIA 551 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++++ L + + LI +T +P R+KL +ES+++ + E + + L++ GI+ Sbjct: 552 VNVSARQLKQEDFVTTVMGLIEETGANPRRLKLELTESMLVSDAESIIVKMNLLKEAGIT 611 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIA 915 LDDFGT S L+YL +P D +K + S + + A++ + I +A N++ ++A Sbjct: 612 FALDDFGTGYSSLAYLSRLPLDQLKVDQSFVRNIETEDSAVVICAATINLAHNLKLKVVA 671 Query: 916 KDIYGEIDIKELTR-MGCDYIQDSHVASPLGFNSILKLLKE 955 + + E L+ CD++Q + P+ + ++ Sbjct: 672 EGVENEAQRYFLSSVHQCDFLQGYLFSKPVAIDEFECFIRN 712 >gi|120602911|ref|YP_967311.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris DP4] gi|120563140|gb|ABM28884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris DP4] Length = 926 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 145/570 (25%), Positives = 268/570 (47%), Gaps = 10/570 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH 457 + R S + + P +LGL + G +LP Sbjct: 361 ALQESEARFRAIFEHSAAGICLVGRDGLLMDANPAFEELLGLTRAEVVGCRFDAFLPVKA 420 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 ++ D + S R + D + W + + + GD+ + Sbjct: 421 ASELD---STCRSSFAEGRDTVSLRLPFLRVDGEQRWGRQIVTAVRDVAGDVAFVLAQVE 477 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITEQ+++ + AF D LTG+PNR FLDR+ T L + + V+ +D+D++K Sbjct: 478 DITEQQQTEARLTRMAFHDALTGLPNRVLFLDRVETALRRARRHETYHFAVLFLDLDRFK 537 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG GD++L RR+ L+ D +AR G+ F I+L ++ + + + Sbjct: 538 VVNDSLGHKAGDELLRQFARRLEPCLREVDTMARFGGDEFAILLDDMSDVDESVNIIERL 597 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + ++ P + E+ ASIG + ++L++A++AMY AK G F Sbjct: 598 QAALRQPFLVQGMEVYTGASIGAVLRARDYTQAEDILRDADIAMYRAKDSGKGRFVVFES 657 Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S+ D + + +L A++ E+ L + PI+ L I GLEAL++W HP+ G ++ Sbjct: 658 SAAPGAQDILRRENELRRALDGDEIELYFQPIVALRTGRITGLEALVRWQHPEQGLLAPG 717 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I +++ + + +++ ++ P+ + INI+++ + + + Sbjct: 718 TFIPLAEESNLICDLDMHVFRKGCLAVVALQEAF-EGPLAVNINISARSFRRLRMVQDIT 776 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T P +KL +E++++ E L RL+ +G+SL LDDFGT S L+YL Sbjct: 777 DILRETGCPPQMVKLEITENLLLTGLE-VTDKLWRLKDLGLSLVLDDFGTGYSSLNYLRQ 835 Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + S ++ E+R A I+ SI + + + ++A+ I + L +GC Sbjct: 836 FPMDILKIDRSFISRVHEERAARGIVESIANLGRTLGLGVVAEGIEVSEQAEILLEVGCP 895 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + Q + P F+ +L+ L+ R PL + Sbjct: 896 HGQGYFYSRPQPFDRMLRTLERRRPLPLSA 925 >gi|124267696|ref|YP_001021700.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum PM1] gi|124260471|gb|ABM95465.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylibium petroleiphilum PM1] Length = 826 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 144/572 (25%), Positives = 250/572 (43%), Gaps = 17/572 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + + + S D ++ D I GL + G Sbjct: 243 FRDITEQLASAARLQLAAQVFESSLDAIFVTDGEHRIAAVNASCERITGLGREQLVGLRT 302 Query: 451 NWLPYIHI---NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +H +D D L RG + E R AD + + ++ Sbjct: 303 E--ALLHPPGADDADTAWFELVREQLAHRGVWEGELWHRRADGSTLPGQVSLVRLAAEGT 360 Query: 508 DI----LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 D +R++G D+TE + + I AF D LTG+PNR +RL L +S Sbjct: 361 DPGETGVRHVGFFKDLTETVAAQKRIEELAFTDALTGLPNRVMLAERLDFALAMSHRHQ- 419 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ +D+D++K+IND LG GD VLV + R+ L+ D +ARL G+ F ++L + Sbjct: 420 TPFALLFLDLDRFKQINDSLGHVFGDRVLVEVAERLKTCLRQIDTVARLGGDEFVMLL-N 478 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++ A + + + P L +VTASIG A + + + +++KNA+ AMY Sbjct: 479 QTDARGAEAIARRVLEVLGQPFTLEGMSFSVTASIGIAMYPNDGESMDDLIKNADAAMYR 538 Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 K RG ++ +K D + LA+E + L Y P I + +VG EAL Sbjct: 539 VKERGRAGFRFYQPQMNVDLLARMKLDHSMRLALERGDFRLHYQPQIDIASNAVVGAEAL 598 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W P G++S EF+ +AEE I A+ ++L R WR Q + + +N++ Sbjct: 599 LRWRDPGLGDVSPGEFIPVAEESGFIVALGEWVLREAVRQAALWRAQGR--SMVVSVNVS 656 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + +++ + ++L +ES+++ + + + L L ++G+ L +D Sbjct: 657 ALQFQQADFVDRVATALAEAKLPATWLELELTESILIRDADEALQRLRALDRLGVQLAID 716 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L YL P +K + S + G E I +++I +A+ + +IA+ + Sbjct: 717 DFGTGYSSLGYLKRFPIRKLKIDRSFIKGLPGDESDAGIAQAVIQVARALRLRVIAEGVE 776 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 L R GCD IQ A L Sbjct: 777 TMAQRDFLQRAGCDEIQGFLFAPALPVAEFEA 808 Score = 44.6 bits (104), Expect = 0.088, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 41/151 (27%), Gaps = 10/151 (6%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM- 445 ++ A + + + + + D+ A + + + Sbjct: 116 LRDQSAQRQAEDELEKLVAELRATLESTAEGILVTDLHGAIRGCNQLFAQLWDMPVELLT 175 Query: 446 ---HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 I W+ H+ D F + R R+R+ + + P Sbjct: 176 QRDDSQILEWMRG-HVVDEQRFVERMGELDRDPLLRASDVLRLRSG----RVLERVVLPQ 230 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 G + + DITEQ S + A Sbjct: 231 YGR-GQPIGRVCSFRDITEQLASAARLQLAA 260 Score = 39.9 bits (92), Expect = 2.1, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 2/96 (2%) Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + G ++ G L D + + ++ + VR AD + + Sbjct: 39 LFGQPVSALVGRPVIELSAT-PEDECFWEDMAAGVGTAEGPQIHSDSFVRHADGRMIPVE 97 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R+ + G + +G D + Q+++ + + Sbjct: 98 RRVNRIWMRPGQAIFVLG-LRDQSAQRQAEDELEKL 132 >gi|322420751|ref|YP_004199974.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320127138|gb|ADW14698.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M18] Length = 594 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 132/592 (22%), Positives = 246/592 (41%), Gaps = 22/592 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-----IVWDWDIVRDRVTTTPDIATI 437 +Q ++ + DGER ++ + D + + + Sbjct: 8 ELRSLQLGPSSEQRLTELQQDGERLAMLQEAIDSLPISAGITISDTDGKIIYVNAAESEM 67 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G A G + G + L +L G + E D + + Sbjct: 68 HGYAPGELIGKQASLLA-------PRRDVVLPRINHGTIGLWKRESLNVRKDGLVFPVQL 120 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 P+ N++G L + DIT +K+ + A+ D +T +PNR +DRL L L Sbjct: 121 TSLPIKNASGRCLGMVTACEDITARKEFERQLETLAYYDTVTKLPNRALLMDRLHQALAL 180 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + ++ +D+D +K +N G VGD L + R+ L + LAR G+ F Sbjct: 181 AQREGR-ELALLFLDLDNFKDLNSARGHEVGDKFLQEVAARLASCLCEANTLARPGGDEF 239 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I++ S + +A A ++ P + E+ + SIG A + +L+ A Sbjct: 240 VIVINSGPDEEGVAATAARLQALFIEPFGIDGEEVYGSTSIGIALFPEDGSDVESLLRCA 299 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + A+Y AK G + F ++ + + E +L + P L + Sbjct: 300 DAALYQAKSEGKGGYQFFSQEMNERTMRRVALENGMRQGLARDEFFLHFQPQWDLKSFRL 359 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 G EAL++W ++G + EF+ IAE +I + +L + + W + P + Sbjct: 360 TGAEALLRWQSAEFGLVGPDEFIPIAESSGVIFDLGELVLRQACLHAVRWEE--FCPDLK 417 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +NI+ + E M ++ +T PS ++L F+ESV+M E++ L L+++G Sbjct: 418 VAVNISGRQFRQPGFLETMARVVRETGVRPSSLELEFTESVIMERAEKNIDALQALKRMG 477 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 + L++DDFGT S L+YL + P D +K + S + AI +II MA +++ + Sbjct: 478 VRLSIDDFGTGYSSLNYLKHFPIDAIKIDRSFIAELVTDSDDAAIADAIISMAHSLKLKV 537 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK---ERFPLVKN 962 IA+ + + L CD Q + A+P+ ++ + + + Sbjct: 538 IAEGVENSDQLHFLVGRKCDEAQGFYFATPMPGEEFTNYVRQCCQHKQVSRR 589 >gi|319764707|ref|YP_004128644.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317119268|gb|ADV01757.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 921 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 137/559 (24%), Positives = 245/559 (43%), Gaps = 10/559 (1%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 R +L + + + D P I G + + G N L DR Sbjct: 356 SARRAALVYQHTSEAMVVTDAQGVVQDINPAFTAITGYEAADILGRRMNVLSSGG-QDRA 414 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + S G + R R + + + I N +G + +IG+ D+TE Sbjct: 415 FYEALWTSLKE--TGSWSGDMRNRRKNGEEFVERLTISTSYNEDGSVHSHIGLFADVTEA 472 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 ++ I A D+LT +PNRQ F L +D + +L ++ +D+D +K++ND Sbjct: 473 RRREASIWRQAHYDHLTQLPNRQMFQQDLQRSMDSA-RASDLPLALVFLDLDYFKEVNDT 531 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G +GD++L + RR+ ++ D +ARL G+ F +IL + ++A Sbjct: 532 FGHDMGDELLRQVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKVLHAVA 591 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700 P L + V+ S G + +LK+A+LAMY AK +G N F + Sbjct: 592 QPYELSGSTVHVSVSAGVTFYPRDGDDGVTLLKHADLAMYAAKEQGRNQFCEFAPTMEQE 651 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +R ++ DL ++ E L Y PI+ + V EAL++W+ P G +S ++F+ + Sbjct: 652 AQNRRLLLRDLQQGLDEGEFALHYQPIVEMRSGRTVKAEALLRWNQPVRGMVSPADFIAL 711 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALIS 819 AEE +I + +++ A + WR+ P + +N++ L + + A + Sbjct: 712 AEESGLIVPLGDWVMREAACQLAQWREDIA-PAFKLSVNVSPVQLNSSGHCVQAWVAHLQ 770 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 S + +E V++ + + L L+ GI L LDDFGT S LSYL D Sbjct: 771 DLSLPGSALVAEITERVLLEADKDTDARLQTLQSAGIQLALDDFGTGYSSLSYLKRFDID 830 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ ++ + + ++II MA + ++A+ + L R GCDY Q Sbjct: 831 YIKIDRSFVSLLSQGNEDATLCQAIIAMAHQLGICVVAEGVETREQHDILLRAGCDYGQG 890 Query: 938 SHVASPLGFNSILKLLKER 956 P+ + + L+ + Sbjct: 891 YWYGRPMPAQELTERLRAQ 909 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 14/180 (7%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGS 414 MA+ + + + G + V+ I +L + + + + + Sbjct: 196 MALGRYGTRTRLSTSDELGELARVLDHSAAHIAQLLQDVAQERSALAQMQAMFNGLAENT 255 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 ++ D + +A ILG + + + R Sbjct: 256 VAGIYMLDESDRIIYANEQLAQILGYGRAQLSDRFP--MERLFP---PPARAAAHQHSA- 309 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++E AD + I M+ G IG+ DITE+K++ A Sbjct: 310 -----RHERSALRADGSKIEIEIFGSAMTF-QGRPA-VIGLVMDITERKRAEMSARRAAL 362 >gi|29833846|ref|NP_828480.1| hypothetical protein SAV_7304 [Streptomyces avermitilis MA-4680] gi|29610971|dbj|BAC75015.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 717 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 134/581 (23%), Positives = 255/581 (43%), Gaps = 16/581 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + + A G Q + + R G+ + D+ + + + + G + Sbjct: 135 EAISVAALQAQGVVGQALHASEARFRAVFEGAAIGIGIADLEGNILQINGALLRMFGGSE 194 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++ G RN + H +D + + V R E D W + + + Sbjct: 195 QAVRG--RNVTDWTHPDDAPQVWRLYEELVRGEREHYHVEKAFYRPDGTVLWTNLTVSLL 252 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +++G + + D TE++ + A D LTG+PNR F +RL L Sbjct: 253 RDADGRPEYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALS---AGG 309 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIIL 621 R + +D+D +K IND LG A GD +LV + R+ +++ARL G+ F + Sbjct: 310 GQRFGLCYLDLDGFKTINDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALT 369 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + ++ + A + ++ PI++ RE+ V SIG + + +E+L++A++ M Sbjct: 370 TGPDTEREVDELAGRIMNALVTPISIDGRELAVRGSIGIVEGPAGERGPAEVLRSADITM 429 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK GGN E + + L A++ +E ++ Y P++ L D + G E Sbjct: 430 YRAKSAGGNRFELADPEADARAITRHGLTTALPAALDRNEFFIEYQPLVHLGDGSVRGAE 489 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD---QANMPPIFI 796 AL++W HP+ G + F+ +AE +I + ++LE+ R W++ P+ I Sbjct: 490 ALVRWLHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEQSVRQAREWQERHCAEAAAPLRI 549 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L L ++ ++ P + L +ES ++G + L RL ++G+ Sbjct: 550 NVNLSPCQLTHPGLVSDTVDILERSGLEPGALCLEVTESALIGADDDLLKPLRRLAEMGV 609 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911 + LDDFGT S L+ L +P +K + S G + I+ I+ +A +++ Sbjct: 610 DIALDDFGTGYSNLANLRRLPVSILKLDRSFTQGMQQYPADPVDLKIVEGIVTLAHSLDL 669 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + + ++L +GCD Q + A P + +L Sbjct: 670 AVTVEGVETGAQAEQLRILGCDTAQGWYYARPGPPERLHEL 710 >gi|320326747|gb|EFW82792.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320331279|gb|EFW87222.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. race 4] Length = 642 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 153/623 (24%), Positives = 286/623 (45%), Gaps = 17/623 (2%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394 + + + + + L I + Q VL+ ++ F ++ ++ Sbjct: 14 LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSAVMIFIARDRLRSLIGGD 73 Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 Q +D +R LA + + V D V I G + + G Sbjct: 74 ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H + ++ + S + G+ E R + + IR + +G Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + +DIT K+S + + D LT +PNR DR++ L + +++ Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSARASKRG-CALLL 248 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND LG VGDDVL ++ R+ + LAR G+ F +++ + + ++ Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + ++ P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368 Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + RV + +L AVE +L + Y P L+ I G+EAL++W HP+ Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAVELEQLRVFYQPAHDLVTRRIRGVEALVRWQHPE 428 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ IAE+ +I I+ ++L+ + +W + +P F+ +N++S+ Sbjct: 429 RGMVSPGEFIPIAEQSRLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + + +T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT S Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L L +P +K + + G + IAI+R++I +A ++ ++A+ I Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607 Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949 L GC Q A P+ +I Sbjct: 608 LLGNGCQLGQGYWFARPMVAQAI 630 >gi|330830342|ref|YP_004393294.1| GGDEF domain-containing protein [Aeromonas veronii B565] gi|328805478|gb|AEB50677.1| GGDEF domain protein [Aeromonas veronii B565] Length = 834 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 150/598 (25%), Positives = 265/598 (44%), Gaps = 22/598 (3%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDR 427 AL+ + + + + + SD + R S + + + D Sbjct: 231 LALLYSAPADTSNLTSVLNTFSVRMVAELERLQSDAQMRLSAVAFETHEGIIITDPGFKI 290 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + + I G S S+ G +H D L + R Q E + R Sbjct: 291 LRVNNAFSQITGFDSQSVLG--------LHLEEDLWPNLGGL-GYELNTLSRWQGETQRR 341 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D + + P+ + G I ++ DI+E+K + I A+ D LTG+PNR+ Sbjct: 342 HVDGHTYPQWEIVTPVQDEKGVISHFVICFEDISERKAAERRIQDLAYYDELTGLPNRRQ 401 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 + L + + D L ++ ID+D +K IND LG A GD +L + R+ L++ Sbjct: 402 LHETLVQTFNEATRD-GLIGALLFIDLDHFKTINDSLGHATGDWLLKEVAARLKRLVRQG 460 Query: 607 DILARLSGNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 D LARL G+ F ++L S ++ A + IA P + + + + AS+G Sbjct: 461 DCLARLGGDEFVLLLPSLSASPPQAEMQADIIAERLITEIAAPYTYVGQVLHIGASVGIT 520 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSE 719 + + ++LK A+ AMY AK G F S + + +L A+ E Sbjct: 521 LFPDREQGVDDLLKQADTAMYQAKSAGRKTRRFFDASMQQQADRRLLIHNELRNALSQQE 580 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L L Y P + +I+G+EALI+W +S +EF+ IAEE +I I ++L Sbjct: 581 LTLYYQPQHMVDGGDIIGVEALIRWQPAGRSLVSPAEFIPIAEETDLIVDIGNWVLHEAC 640 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + W + P I +N+++K + E + ++++T P+ + L +ESVV+G Sbjct: 641 AQYVLWEENGIHIP-QISVNVSAKQFHATDFVERIHDVLAQTGMDPACLNLEITESVVLG 699 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897 + E + + L+++GIS +DDFG S LSYL +P D +K + S + +A Sbjct: 700 HAEDTISKMTELKELGISFAIDDFGAGYSSLSYLKRLPADELKIDRSFIQDIPKDGDNMA 759 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ ++I MA+++ + A+ + ++ L GC + Q + PL + K ++ Sbjct: 760 IVEAVIAMARHMGFNVTAEGVESRQQLEFLKAQGCSFYQGYLASKPLPVPYLEKYVQR 817 >gi|196045747|ref|ZP_03112977.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|196023578|gb|EDX62255.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] Length = 909 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 173/870 (19%), Positives = 353/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 + + +V L Y D FL +NL L + L S+L+++ Y + Sbjct: 161 SSTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALLLYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMISFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E + Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL +K L++ Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|165871333|ref|ZP_02215982.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167640372|ref|ZP_02398636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170688171|ref|ZP_02879382.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|170708029|ref|ZP_02898477.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|177651942|ref|ZP_02934525.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190569113|ref|ZP_03022012.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227818111|ref|YP_002818120.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229601817|ref|YP_002869563.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|164713000|gb|EDR18528.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167511592|gb|EDR86974.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170127002|gb|EDS95881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|170667864|gb|EDT18616.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|172082646|gb|EDT67710.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190559781|gb|EDV13767.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227006433|gb|ACP16176.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229266225|gb|ACQ47862.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] Length = 735 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L + E R + + ++++ I + P N +++ G Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG +GD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732 >gi|46579601|ref|YP_010409.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449016|gb|AAS95668.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233405|gb|ADP86259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris RCH1] Length = 926 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 145/570 (25%), Positives = 268/570 (47%), Gaps = 10/570 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH 457 + R S + + P +LGL + G +LP Sbjct: 361 ALQESEARFRAIFEHSAAGICLVGRDGLLMDANPAFEELLGLTRAEVVGCRFDAFLPVKA 420 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 ++ D + S R + D + W + + + GD+ + Sbjct: 421 ASELD---STCRSSFAEGRDTVSLRLPFLRVDGEQRWGRQIVTAVRDVAGDVAFVLAQVE 477 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITEQ+++ + AF D LTG+PNR FLDR+ T L + + V+ +D+D++K Sbjct: 478 DITEQQQTEARLTRMAFHDALTGLPNRVLFLDRVETALRRARRHETYHFAVLFLDLDRFK 537 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG GD++L RR+ L+ D +AR G+ F I+L ++ + + + Sbjct: 538 VVNDSLGHKAGDELLRQFARRLEPCLREVDTMARFGGDEFAILLDDMSDVDESVNIIERL 597 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + ++ P + E+ ASIG + ++L++A++AMY AK G F Sbjct: 598 QAALRQPFLVQGMEVYTGASIGAVLRARDYTQAEDILRDADIAMYRAKDSGKGRFVVFES 657 Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S+ D + + +L A++ E+ L + PI+ L I GLEAL++W HP+ G ++ Sbjct: 658 SAAPGAQDILRRENELRRALDGDEIELYFQPIVALRTGRITGLEALVRWQHPEQGLLAPG 717 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I +++ + + +++ ++ P+ + INI+++ + + + Sbjct: 718 TFIPLAEESNLICDLDMHVFRKGCLAVVALQEAF-EGPLAVNINISARSFRRLRMVQDIT 776 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T P +KL +E++++ E L RL+ +G+SL LDDFGT S L+YL Sbjct: 777 DILRETGCPPQMVKLEITENLLLTGLE-VTDKLWRLKDLGLSLVLDDFGTGYSSLNYLRQ 835 Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + S ++ E+R A I+ SI + + + ++A+ I + L +GC Sbjct: 836 FPMDILKIDRSFISRVHEERAARGIVESIANLGRTLGLGVVAEGIEVSEQAEILLEVGCP 895 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + Q + P F+ +L+ L+ R PL + Sbjct: 896 HGQGYFYSRPQPFDRMLRTLERRRPLPLSA 925 >gi|89092461|ref|ZP_01165415.1| sensory box/GGDEF/EAL/CBS domain protein [Oceanospirillum sp. MED92] gi|89083549|gb|EAR62767.1| sensory box/GGDEF/EAL/CBS domain protein [Oceanospirillum sp. MED92] Length = 837 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 154/597 (25%), Positives = 267/597 (44%), Gaps = 18/597 (3%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYF----SQGIFSDGERQSLA---VLGSGDIVWDWDIV 424 V GLV ++ + +V + + LA + S + + D+ Sbjct: 245 VIGLVSYGDILRNVEMDYVYRLKELLHERDRALALSQHNLKLADKVIEASMEAIVVTDLQ 304 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 P I G + G N L + F + + + G Q E Sbjct: 305 ARIQRVNPAFTEITGYEEWEVLGKNPNLLSSGRHD--ALFYQKMWASL-QETGTWQGEIW 361 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 + D + + I + + G I +Y I +D+TE KKS I A+ D LT +PNR Sbjct: 362 NKRKDGTIYPEWLTITAVEDEAGQICQYASIFSDLTEIKKSEARIKRLAYFDELTRLPNR 421 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + F DRL L + + + + +D+D ++++ND G+ GD VL + RRI +L Sbjct: 422 KLFNDRLHLSLGYAQEHGH-KAALAFLDLDFFQRVNDRFGLDAGDQVLREVGRRIENVLC 480 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D +AR G+ F +IL + ++++ + + + PI + +I +T SIG + + Sbjct: 481 EGDTVARFGGDSFNMILTDVEDDQAVSEYLTRLLEVVNQPIMVAGSDINLTVSIGVSFFP 540 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722 S + ++ + AE A+ AK G N F R R + DL A+E + L Sbjct: 541 SDATDAEDLFQCAEAAVKQAKDFGRNSYRFFSSEQHRLVQSRYRMSGDLHRAIETDQFQL 600 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P + L + VG EALI+W HP+ G I EF+ +AE+L I I ++L R Sbjct: 601 YYQPKVDLQ-RQTVGAEALIRWSHPELGFIPPGEFIPLAEDLGFIDQIGHYVLCEAVRQA 659 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W DQ + + IN+++K + ++ E + ++ + P + + +E+ + + Sbjct: 660 KEWYDQG--LSVQVAINVSAKQMQRRDMAEEVLQVVEQYSCPPHLLAVELTETSFLHCLD 717 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 +R + +LR GIS+ +DDFGT S LSY+ I D +K + S + ++ I+ Sbjct: 718 ETRATIKKLRDAGISIAIDDFGTGFSSLSYIRNIDMDVLKIDRSFLINIENSDVDRTIVS 777 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 SII M++ + ++A+ I E L + CD IQ +A P+ + K + Sbjct: 778 SIIEMSQAMGLQVVAEGIETETQFAMLKALNCDQIQGYLIARPMPAENFSDWFKAQL 834 >gi|115360686|ref|YP_777823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria AMMD] gi|115286014|gb|ABI91489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia ambifaria AMMD] Length = 745 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 145/592 (24%), Positives = 256/592 (43%), Gaps = 26/592 (4%) Query: 378 IVILIGFTVIQHVLATGYFSQ---GIFSDGERQSLA----------VLGSGDIVWDWDIV 424 + L+ F + + Y +Q + E LA + + + D Sbjct: 148 LTGLLCFADVLQSIEHEYANQLRSALRERDEALGLARFNLRMADRVFESALEGIMVTDRH 207 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYE 482 + G + G L + F L + G Q E Sbjct: 208 AKIERVNQAFTRLTGYTEDEVVGRNPGLLSSGRQTPD----FYKQLWHSLTTD-GHWQGE 262 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 R + + I + +S +I Y I +DIT+++++ E + A D LT + Sbjct: 263 IWNRRKAGELFLEYLTITSIRDSESEISHYAAIFSDITQRRQAEERLGYLATHDVLTNLA 322 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F +RLT + + + VM +D+D++K +ND LG GD+VL + RI Sbjct: 323 NRMLFEERLTHAIVHAKRFGR-KVAVMYLDLDRFKLVNDTLGHNAGDEVLKMVAERIVAN 381 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 ++ D +AR+ G+ F ++L ++ + A + + I++ +R+I VT SIG + Sbjct: 382 VRANDTVARMGGDEFALVLEEVDDVRDVGRVARKLLDEVGRAIDIGDRQIFVTPSIGISI 441 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSEL 720 + + +++ A+ AMY AK RG N + F S ++ +L A+E +E Sbjct: 442 YPDDGTEAEDLILLADQAMYGAKSRGRNVFQFFESKMTSSAIEQLETLGELHRALEQNEF 501 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P L IVG+EAL++W HP G + +F+ +AE + I ++L R Sbjct: 502 RLFYQPQYDLASGRIVGVEALLRWLHPSRGLVPPRDFIGLAERSALTVPIGRWVLHEACR 561 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 W D+ + +N++++ + + ++S+T ++L ES+ M Sbjct: 562 QARRWLDEGFEFG-RVSVNVSARQCFTDHFLSDLTTILSETALPAEYLQLELLESMAMNT 620 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAI 898 E +LL L GISL +DDFGT S L YL +P DT+K + S +T S AI Sbjct: 621 REEIGILLRELATRGISLAIDDFGTGYSSLVYLKDLPVDTLKIDQSFLTDCGSGSTDDAI 680 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 +R+I+ M + + ++ + + + L +GC Q A P + ++ Sbjct: 681 VRAIVAMGRALGLDVVMEGVETAKQLAFLQEIGCHQGQGFLFARPQPADQLV 732 >gi|171058030|ref|YP_001790379.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170775475|gb|ACB33614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 898 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 155/585 (26%), Positives = 260/585 (44%), Gaps = 17/585 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L +Q + + + S + + D I G Sbjct: 324 LRSVGTVQDITERRQAEDEMRLA----ASVFDNSLNAILIADANGRIRKVNRAFTAITGY 379 Query: 441 ASGSMHG-PIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G R +H L + G+ E + D + + Sbjct: 380 TAEEAVGDTPRLMKSGLHSPGFYGEMWAELQAC-----GKWDGELMNQCKDGRIISVRES 434 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I + + G + YIGI +DITEQK S + I A+ D LTG+PNR +DR L + Sbjct: 435 IAAVHDPAGAVAYYIGIFHDITEQKASAQRIHQLAYYDVLTGLPNRALLMDRCQHELARA 494 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 D R V+ +D+D++K IND LG VGD +L ++ +R+ L+ D +ARL G+ F Sbjct: 495 MRDGK-RLAVLFLDLDRFKHINDSLGHPVGDGLLRAVAQRLQGTLRDSDTIARLGGDEFI 553 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L S + A + + P L E ++V AS+G + + + + K A+ Sbjct: 554 VLLEHVETSAGVELAARRILDAFRDPFQLEEHRLSVGASVGISLFPDHASDITSLFKYAD 613 Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 LA+Y AK G F DR+ ++ +L A+E ++L L Y P+ L D + Sbjct: 614 LALYQAKAAGRGDFRFFEPRFNDAAKDRMRLERELRQALERNQLSLQYQPVFALPDGRLA 673 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP G++S + F+ IAE+ +I I ++LE+ R W D P + I Sbjct: 674 GAEALLRWTHPALGSVSPATFIPIAEDSGLIVPIGAWVLEQACRQARQWLDAGLDPGV-I 732 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ + N+L + + +++++T ++L SES + + E LG+LR +G+ Sbjct: 733 AVNLSGMQIQRNDLVDTVSSVLARTGLPACHLELEISESYITRHAESDLQRLGQLRALGV 792 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914 S+ +DDFGT + L +L +P +K + S M A+ R+II + + T++ Sbjct: 793 SMAIDDFGTGQTSLGHLRRLPVSKLKIDRSFMADIEHDAAAAAVTRAIIGLGHGLGLTVV 852 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 A+ + L CD +Q A PL L PL Sbjct: 853 AEGVESAAQESALVAQHCDLVQGFRYARPLDAPVFAALCARPQPL 897 Score = 75.8 bits (185), Expect = 4e-11, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 10/151 (6%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-----GSMH 446 Q + + R + A + WD +T + ++A I + + Sbjct: 198 ELKRQEQHLRASDARFNQAEHVARVGSWDLVPHTGAMTWSVEMARIFDITAQPHASHDAA 257 Query: 447 G----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G ++L +H ++R + R EFR+ + + W+ +R Sbjct: 258 GASVYSQADFLAAVHPDERARVVAAQAAASAEHRPC-DIEFRIVTSGGKMKWVHLRSTTF 316 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 +G LR +G DITE++++ + + A Sbjct: 317 HGDDGRPLRSVGTVQDITERRQAEDEMRLAA 347 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 52/191 (27%), Gaps = 23/191 (12%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + + L G + + ++ L + + S ++ + G +V Sbjct: 35 LANAALESQLLAGSEQAESMFVQLERQRNALRDAHGREQALSAFAQR--VMDTVGGVVIA 92 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF--------- 471 D L + G + L +H D L Sbjct: 93 LDPQGRLRQRNRHCQNDL---APLPEGSSVDLL--LHPQDLAALEAALPHLPWQVHSVLF 147 Query: 472 -VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 R+G + E + D + + ++ + ++ + DI+E K+ + + Sbjct: 148 ETVRRQGGYRAEHQFAMRDGSYRYHLVEAAMLYSAQNKEEGAVLSGTDISELKRQEQHLR 207 Query: 531 ------CNAFQ 535 A Sbjct: 208 ASDARFNQAEH 218 >gi|331014835|gb|EGH94891.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 643 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 153/666 (22%), Positives = 288/666 (43%), Gaps = 40/666 (6%) Query: 303 YPMVTASIARITLASIVLYYTYFI-IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361 A + + + + I + E A L + + W + + I Sbjct: 3 DYSRGALRTAVLYGLLSILWFMACDILLPLFIDEPARLAFCHQMAGYAWALLSAVTI--F 60 Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIV 418 + D ++ + G + D +R LA + + V Sbjct: 61 VARDRLRKIIGGEAHF--------------------ERQQDDYDRLRLAEAVFDSTREGV 100 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 D V I G + + G + H + +R + S + G Sbjct: 101 LVSDAQGRIVHVNRAFVDITGYQAEEVLGFNPSTFKSGRH--GPEFYRQMYHSLLS--VG 156 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + E R + + IR + +G + ++ + +DIT K+S + D Sbjct: 157 QWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQLKHFVAVFSDITAIKRSERELAQLIHFDA 216 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LT +PNR DR++ L + +++ID+D +K IND LG VGDDVL ++ Sbjct: 217 LTDLPNRLLLTDRISQALTSARASKRG-CALLLIDLDHFKNINDSLGHNVGDDVLKAVAE 275 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L LAR G+ F +++ + + ++ A A + + + P + ++ VTAS Sbjct: 276 RLKGLCGNETTLARPGGDEFALLVKNCSQVVRAAALAQQVSEVLKAPFVIAAHQLFVTAS 335 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAV 715 +G + + ++ ++L+NA+ A++ AK G + + + RV + +L A+ Sbjct: 336 MGISLYPGDAQSAEQLLRNADSALFKAKSEGRDCYALYTEELTAHAQQRVQLAGELRQAI 395 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E EL + Y P+ L+ + G+EAL++W HP G +S EF+ IAE+ +I I+ ++L Sbjct: 396 EQGELRVFYQPVHDLITRSVCGVEALVRWQHPTRGMVSPGEFIPIAEQNGLIADIDAWVL 455 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 R + +W + +P F+ +N++S+ +L + ++ P+ ++L +ES Sbjct: 456 NTACRQMRAWLTE-GVPIAFVAVNVSSRLFSRGDLDRQVAQVLHDIGLDPAFLELEVTES 514 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 VM +PE++ L RLR++G+SL +DDFGT S L L +P +K + + G Sbjct: 515 AVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYSSLLRLKRMPVQKLKIDQGFVAGLPGDG 574 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 IAI+R++I + ++ ++A+ I L GC Q A P+ + ++ Sbjct: 575 DDIAIVRAVIALGASLGMRVLAEGIEQASQAAFLLENGCQLGQGYWFARPMAAH-LIDW- 632 Query: 954 KERFPL 959 P+ Sbjct: 633 -SHAPV 637 >gi|186472629|ref|YP_001859971.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Burkholderia phymatum STM815] gi|184194961|gb|ACC72925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Burkholderia phymatum STM815] Length = 915 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 146/572 (25%), Positives = 262/572 (45%), Gaps = 18/572 (3%) Query: 393 TGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + + +A + S + + D + G + + G Sbjct: 336 ASKMTAEVRESEAELRIAAVAFDSLEGMMVTDADGTILRVNSAFTKCTGYTADDVIGRNP 395 Query: 451 NWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L H D FR + ++ +R G Q E R + + + + I + +G++ Sbjct: 396 RLLSSGRH--DAAFFRDMWETI--HRVGGWQGEIWDRRKNGEIYPKWLTITAVKAVDGNV 451 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 Y+G DITE+K + E I AF D LT +PNR DRL ++ LSA + + ++ Sbjct: 452 THYVGTHYDITERKLAEEQIKELAFFDALTHLPNRTLLRDRLKQVIALSAQN-HTHGALL 510 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----E 624 +D+D +K +ND LG GD +L + R+ ++ D +AR+ G+ F I+L + Sbjct: 511 FVDLDNFKTLNDTLGHDKGDLLLGQVAVRLLGSVREGDTVARMGGDEFVIVLSDLSRNRD 570 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + +++ P L E TASIG +T + + E+LK ++LAMY + Sbjct: 571 EAASETEGAAEKVLTALSRPYYLAGTEFRTTASIGATLFTGHETSIDELLKQSDLAMYKS 630 Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F + +R ++ L A++ +L + Y + L + G EAL+ Sbjct: 631 KESGRNAICFFDPAMQTVVMERAALEAALRRAIDEDQLLVHYQAQV-LNGNRVTGAEALV 689 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G + +EF+ +AEE +I A+ +L+ R + W + + + I +N+++ Sbjct: 690 RWQHPQHGLVPPAEFIPLAEETGLILALGDRVLDTACRQLAQWSLRPDRAHLSIAVNVSA 749 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L +N + +++T PSR+KL +ESV++ N E + LR G+ +LDD Sbjct: 750 QQLRENSFVTSVLEALARTGADPSRLKLELTESVLVDNVEDIIRKMTLLRTKGVVFSLDD 809 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FG S LSYL +P +K + S + I R+I+ +A+++ +IA+ + Sbjct: 810 FGVGYSSLSYLKRLPLGQLKIDRSFVRDVLDDPNDAVIARAIVALAQSLGLGVIAEGVET 869 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + L GC Q PL Sbjct: 870 QAQRQFLADAGCHAYQGYLFCRPLPIEDFEAF 901 >gi|257057649|ref|YP_003135481.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587521|gb|ACU98654.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Saccharomonospora viridis DSM 43017] Length = 919 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 155/561 (27%), Positives = 263/561 (46%), Gaps = 15/561 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + R V + V D + P ILGL +M G P ++ Sbjct: 362 ARRTVERRYRTVVTALDEGVVVIDENELVGSANPAAGRILGLPVEAMIGCSPALFP-LYD 420 Query: 459 NDRDNFR-TILDSFVGYRRGRLQY--EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + S + R G + R R D Q+ W+ + RP+ + + Sbjct: 421 ESGARVPPSEYPSALTRRTGHASHGRVLRARRPDGQWVWLSMSCRPLDSDKTPPHEVVVS 480 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DITE++ E + +A D LT + NR L RL +L V+ ID+DK Sbjct: 481 FTDITERRAIGERLEHDATHDPLTNLANRTLILQRLEEML---RRSGGRPVCVLFIDLDK 537 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG +GD+VL R+ ++ D++ RL G+ F I+ + +I Sbjct: 538 FKVINDSLGHGIGDEVLRIAGERLKNCVRQGDLVGRLGGDEFAIVASDMAHDSQIQALIG 597 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVES 694 +R+++ P+ + R + + ASIG + + ++ ++L++A++AMY AK RG E Sbjct: 598 RIRRALTEPVVVEGRRLRIDASIGVVTTHADDERSAEDLLRDADVAMYQAKTRGRGRYEF 657 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F V ++ +++DL +V +L++ Y P++ L ++ V +E L++WDHP G I Sbjct: 658 FDVELRERVQRQLRLEQDLRESVRGGQLWVAYQPVVDLRTQQRVAVEGLLRWDHPVHGRI 717 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S EF+ +AEE +I I ML R++ S R + + +N++++ L D + Sbjct: 718 SPGEFIPLAEESDLINLIGGHMLRTATRELASRRRHSG-VRTQLAVNVSARQLDDGSVVS 776 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + + T P + L +ES +M PE + +L LR +G+ L +DDFGT S L+ Sbjct: 777 AVNEALRATGLPPGELCLEITESALMQEPEAAADVLTALRDLGVRLAIDDFGTGYSSLAQ 836 Query: 873 LGYIPFDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 L +P DT+K + S + G AI++ II MA ++ T++A+ E I L Sbjct: 837 LWKLPLDTLKIDRSFVAGLDGPNHPDAEAIIKGIITMAHSMGLTVVAEGTENERQIAILR 896 Query: 929 RMGCDYIQDSHVASPLGFNSI 949 +GCD Q H+ P + + Sbjct: 897 ELGCDQAQGFHLGKPAPAHEV 917 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 6/151 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT-ILGLAS 442 + V ++ + +R L V S + + V P A + + Sbjct: 121 VGIATDVTERFNNTRELDDLADRYRLLVELSPEGI-CVHQDGKLVYINPAAARFVKAASP 179 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G ++ + S E R+R D + + Sbjct: 180 TQLLGRPIT--DFVRPAAVPELLRRISSLREPGEATEPTEVRLRTLDGGSLCIESVSVRI 237 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + G + I DIT QK + + A Sbjct: 238 TWR-GKPAYQV-IMRDITAQKAAQAALRYQA 266 Score = 53.0 bits (126), Expect = 3e-04, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 8/116 (6%) Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W D++ VT +P +A ILG+ + + + L + + Sbjct: 33 WSVDLLDYDVTWSPRLAEILGVDTQNADAVRQRLLDLLEPLTVAARNYPVW-------HN 85 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNA 533 E + W R N+ G + R +GIA D+TE+ + + A Sbjct: 86 FDLEQCHTTPGGETRWTRFLARAQGNAATGKVERLVGIATDVTERFNNTRELDDLA 141 Score = 48.8 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 17/143 (11%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q ++ + + Q+ V + D + + P T+ G + G Sbjct: 246 QVIMRDITAQKAAQAALRYQAALVRHASDAIIATTSDGMVTSWNPAAETVYGHSEDQALG 305 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + L + ++ + + G ++ E R AD + + PM + Sbjct: 306 RPVSELVGVTLD---------PATIVAEGGVVEAEHR--KADGSALTVRVSASPMDD--- 351 Query: 508 DILRYIGIANDITEQKKSLEGIL 530 Y+ + D T ++ Sbjct: 352 ---GYVLMCADETARRTVERRYR 371 >gi|229099781|ref|ZP_04230706.1| Sensory box protein [Bacillus cereus Rock3-29] gi|228683670|gb|EEL37623.1| Sensory box protein [Bacillus cereus Rock3-29] Length = 892 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 183/819 (22%), Positives = 334/819 (40%), Gaps = 70/819 (8%) Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260 + I L + + +L A+ + ++ YI + GF K + S L + I Sbjct: 78 AMEITLFLHSLSICDQVLFSYEALPFFIIQYILLFSGFAIKFIKHYSIRGLAQFSFDSIF 137 Query: 261 LSSSLIIFLFMY-LHWNRWH-AKVGYITFSGIACIAILFCMS--------FYYPMVTASI 310 + I F + L + +H G L + Y + I Sbjct: 138 IVIMNIYFTLTFILDLSSFHTLTKDTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLI 197 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 T+ + Y F + G+K LI ++ I + + K + ++ Sbjct: 198 IGFTIILVYGYIQLFQLNTGIKTSAEFSYLIHTASILLIGLSSILYILDKPMQHETKTKY 257 Query: 371 LVGGLVLIVI-------------------------------------------------L 381 V ++ Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNKVLIDT 317 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q + + +R D V+ ++ + ++ Sbjct: 318 YEQLTTQLEDEVEEGASALSKSEQRYKSLFEDHPDAVFSLNMHGVFQQSNTACESLF--T 375 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + L +I D D + L R L E R + + ++++ I + P Sbjct: 376 AYYCEVASYSLLHFIDPKDHDLLKRALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N +++ GIA DIT + + + AF D LTG+PNR+ F L TIL+ + T Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTS 492 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 N VM +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L Sbjct: 493 AN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A A + + P + + E++VT SIG A + +E++KNA+LAM Sbjct: 552 PDMYSEKSAAFIAEQILTILNKPFFIKDEELSVTPSIGIAMYPDYGTDVTELMKNADLAM 611 Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F +++ ++ +L A++ +E +L Y P + ++I+G E Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIEFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HPK G +S ++F+ +AEE I + ++L + W +Q + + +N Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACSEAKRWHNQ-GFSHLKVGVN 730 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ +L + ++ +T P + + +ES+ + + L +L+ +GI ++ Sbjct: 731 LSVVQFNHTDLIPTISKVLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P +T+K + G + AI+ SII ++K + +IA+ Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEG 850 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E K L CD+IQ ++ P+ + LL ++ Sbjct: 851 VETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWMLLHKK 889 >gi|225867278|ref|YP_002752656.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|229187527|ref|ZP_04314667.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] gi|225789174|gb|ACO29391.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|228595894|gb|EEK53574.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] Length = 909 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 165/870 (18%), Positives = 346/870 (39%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160 Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274 + + + + L L+ + + ++ + L+ Y + Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ + I Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKR-PFAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E + Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C Y+Q + + PL +K L++ Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|220934069|ref|YP_002512968.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7] gi|219995379|gb|ACL71981.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7] Length = 655 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 146/623 (23%), Positives = 283/623 (45%), Gaps = 20/623 (3%) Query: 347 IFIWFIGLWMAITKRLDN----DIIQPALVGGLVLIVILIGF-------TVIQHVLATGY 395 + W L ++ ++ + L G L L+ +G V Q A Sbjct: 25 LVPWGQALGADLSGQIQGTADVWLWPLILGGFLALLFASLGIYNRALRRQVAQQTRALRE 84 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + S+ + + S D P + L ++ + + Sbjct: 85 ANTTLRSERDFSQSIIQASPAFFVAIDTRHRVRMMNPAMLRALDRSAREVRDRP--FADL 142 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 D + + +Q+E V A D + + + N G + + + Sbjct: 143 CVPADEQEALHAVFQHMLRTGHPIQHESHVVARDGERLLVEWHGNTVRNGQGQVEYFFAL 202 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DITE++++ + A D LTG+PNR +R++ LD++ D + ++ +D+D+ Sbjct: 203 GLDITERRRTQAQLEHIAHYDLLTGLPNRTLLQNRISHALDVARRRDR-QVAILFLDLDR 261 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG A GD++L ++ R+ L+ D LAR G+ F +++ ++ ++ A Sbjct: 262 FKVVNDSLGHAYGDELLRQVSDRLRRRLREEDTLARWGGDEFIVLVDEVDDPQGLSLLAE 321 Query: 636 AMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + +A P L +E+ V SIG + + ++ +++ A+ AMY AK +G ++ + Sbjct: 322 GILAELAEPYRLSNGQEVFVGGSIGISLYPQDGRSAEQLIMKADTAMYQAKDQGRSNYQF 381 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + +DR+ ++ L A+E E L Y P +R D+ ++G+EAL++W HP G Sbjct: 382 YTSALTLAANDRLALETSLRHALEREEFTLHYQPRVRTQDDVMIGMEALVRWHHPDKGLT 441 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 + F+ +AEE +I + L++L R +W PI + +N++ + L +L Sbjct: 442 APDAFIPMAEETGLITPLGLWVLRTACRQAQTWMRLYG-EPIHMAVNLSMRQLRQPDLVS 500 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + A++ T S ++L +ESV+M + L L+ +G+ L +DDFGT S L+Y Sbjct: 501 QIDAILRDTGLPASSLELELTESVLMAGDGHTLTALAELKALGVRLAIDDFGTGYSSLAY 560 Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P D +K + S ++ +AI +II MA+ + ++A+ + + L + Sbjct: 561 LKRLPIDALKIDRSFVSDIPHDASDMAIASTIIAMARTLGLEVVAEGVETPEQLAFLKKE 620 Query: 931 GCDYIQDSHVASPLGFNSILKLL 953 GCD Q + P+ ++ L Sbjct: 621 GCDSYQGFGFSPPVDAQAMTLWL 643 >gi|121592439|ref|YP_984335.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] gi|120604519|gb|ABM40259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax sp. JS42] Length = 669 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 140/570 (24%), Positives = 249/570 (43%), Gaps = 19/570 (3%) Query: 386 VIQHVLATGYFSQGIFSDGER---QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +Q A +D +R Q+ + + D + D+ + G + Sbjct: 85 TLQIFAARAAAELQRQTDDQRIRQQASLLDKARDAIIVRDLEHRITFWNEGAERMYGWSR 144 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G L Y + D + G E + R + Sbjct: 145 EEVLGRSIATLLYQNPEDFLRATQQVMQH-----GVWSGEILQCDRAGRTLEAEGRWTLV 199 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 N G+ + I DI +K I AF D LT +PNR LDR+ L + + Sbjct: 200 RNDRGEPESVLAINADIGTRKHQEREIQRLAFFDPLTHLPNRVQLLDRVDQALAKAQRLE 259 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL- 621 ++ ID+D +K +ND LG GD++L + +R+ ++ D +ARL G+ F +++ Sbjct: 260 QG-GALLFIDLDNFKTLNDTLGHDQGDELLQIVAQRLNTCVRSADTVARLGGDEFVVLVE 318 Query: 622 ----ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 S+ + + + ++ P L + T SIG A + + T E+LK A Sbjct: 319 QLSAHSDTLAEQAGAVGEKILAVLSAPYALTGYQHRSTPSIGIALFNHAPTTVGELLKQA 378 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LAMY AK G N + F S + +R ++ DL A+ E L Y P I I Sbjct: 379 DLAMYQAKTAGRNTLRFFNPSMQHAVAERASLEADLRNALAQKEFLLHYQPQINAR-GAI 437 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG+EAL++W HP+ G +S +F+ +AEE ++ + ++L + W+ + P+ Sbjct: 438 VGVEALLRWAHPRRGMVSPGQFIPLAEETGLVLPLGHWVLHTACSVLADWQRVPALAPLT 497 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++S+ D + + +++ T S++KL +ES+++ + + + LR +G Sbjct: 498 MAVNVSSRQFRDAGFVDDVAGVLAATGAPASQLKLELTESLLVEDLAATIATMAALRALG 557 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 + +LDDFGT S L+YL +P +K + S + AI+R+II +A ++ + Sbjct: 558 VGFSLDDFGTGYSSLAYLKRMPLGQLKIDQSFVRDLLTDPNDAAIVRTIIGLAASLGLEV 617 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 IA+ + L GC Q + P Sbjct: 618 IAEGVETSAQRDWLAHAGCAVYQGYFFSRP 647 >gi|119775539|ref|YP_928279.1| sensory box protein [Shewanella amazonensis SB2B] gi|119768039|gb|ABM00610.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella amazonensis SB2B] Length = 751 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 154/562 (27%), Positives = 265/562 (47%), Gaps = 16/562 (2%) Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457 + E+ L + + V D TI G + + G L H Sbjct: 195 AAEEQLFLTSKVFENAIEGVMITDSNGIITEINGAFETITGYSRDEVIGKTPKLLNSGRH 254 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +RD F + + G E R + I + +G + ++ + + Sbjct: 255 --ERDFFENLWRALKTQ--GHWHGEIWNRRKNGTLFAEQTSISAVYGEDGQVRCFVAVFS 310 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI+ K++ + A+ D LT +PNR + L+A + R +++ID+D +K Sbjct: 311 DISLLKQTEAEVAQLAWHDPLTRLPNRSKLTTISQQQIKLAA-NRKTRLALLLIDVDLFK 369 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND G GD VL+SL+ R+ LL D LAR+ G+ F +L I A+ Sbjct: 370 HINDSFGHLAGDKVLLSLSERLAALLGAEDTLARIGGDEFV-LLTQVRRRDDIPVILSAI 428 Query: 638 RKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 +++ + + ++ASIG A + +LKNA+ AMY AK +G N + Sbjct: 429 QRAFDTSFDTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQGRNRHAFYT 488 Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + ++ ++ L AV+NS L LVY P I L +++G+EAL +W + G +S Sbjct: 489 EQMTQSSMQQLRLQTALRGAVKNSALSLVYQPKINLRTRKLIGVEALCRWTDHELGVVSP 548 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +EF+ +AE + ++ I L++L+ R WRDQ P + +N++ L + + + Sbjct: 549 AEFIPVAESIGLMPEIGLWVLKEACRQARIWRDQGLNPG-RMAVNVSGSQLTGDNFADSV 607 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++++T SP ++L +ESVV+ NP + + +LR +G+SL LDDFGT S LSYL Sbjct: 608 ARVLTQTGLSPDALELEITESVVLDNPASAIDTMDKLRGMGVSLALDDFGTGYSSLSYLR 667 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P + +K + S + + AI +II M + ++ +IA+ + E + L R+GC Sbjct: 668 KLPLNKLKIDQSFVRELPTDQDSGAIAMAIIAMGEALKLGVIAEGVENETQAEFLLRLGC 727 Query: 933 DYIQDSHVASPLGFNSILKLLK 954 Q A PL + + +LL+ Sbjct: 728 TEAQGYLFARPLLASELKQLLQ 749 Score = 45.7 bits (107), Expect = 0.036, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 9/139 (6%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 A G G+ + + +W D L+ + Sbjct: 70 AAALGGGESGLLQSF------MDAFDEHIWIKDAEGRYRFINQSTLVSWDLSPAQILSRK 123 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + + V + E R+ D W+ PM + +G + Sbjct: 124 DAE---VFPDRVSEYTDTDLKAVKEGHPIVVAECIDRSLDKGNIWLETIKAPMYDMDGRL 180 Query: 510 LRYIGIANDITEQKKSLEG 528 L IG DI K + E Sbjct: 181 LGVIGTTRDIARYKAAEEQ 199 >gi|330963168|gb|EGH63428.1| sensory box protein/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 705 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 139/585 (23%), Positives = 262/585 (44%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H + Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKSHSMILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEMVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT++K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITQRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L +A + + +++D +K IN+ G +GD VL+ ++ R+ E + D L R+ G Sbjct: 297 LTQAAVS-RWKLATLTVNLDGFKNINETWGHVLGDQVLLEVSHRLSECINASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ +RK++ +P + + I +TASIG A + + E++ Sbjct: 356 DQFALILMIRVGQPDTRQTLERIRKALRVPFMVEGQSIVMTASIGIALYPEDGEDARELV 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM AK G + + R+ ++ L AVE +VY P + L+ Sbjct: 416 RHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVEKQAFEIVYQPKLNLVT 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I GLEAL++W P +S + F+ + E L +I + ++++R+ I W+ Sbjct: 476 GRICGLEALLRWPRPGQQGVSPAVFVPVLESLGLIGEVGNWVVDRVCAQIAHWQRSGLGL 535 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +N++ + + ++ L ++ ++ +P +++ +ES +M N + L LR Sbjct: 536 -FQVAVNVSGQQISNSSLVADIRQALTSHRVAPQWLEVELTESSLMENTSHTIATLETLR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A ++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLG 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + L Sbjct: 655 LKVIAEGVETPEQLAFLRDNQCDQIQGYLISKPLPLAELETFLSA 699 >gi|238790257|ref|ZP_04634031.1| Sensory box-containing diguanylate cyclase [Yersinia frederiksenii ATCC 33641] gi|238721607|gb|EEQ13273.1| Sensory box-containing diguanylate cyclase [Yersinia frederiksenii ATCC 33641] Length = 854 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 140/580 (24%), Positives = 267/580 (46%), Gaps = 17/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ + + + ER + D +W+ D + TI GL Sbjct: 282 LVLRRAMSEARIADENKAALIASEERFRHVAEAATDWLWETDADLRITYLSQRFLTITGL 341 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G + L D R+ L + + R LQ + +A I Sbjct: 342 SVEHWLGRNLDSLLNC---DIIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRIYA 396 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 +P+ + + + + G A+DIT + ++ E I + D LTG+PNR + L L A Sbjct: 397 KPII-KDTNTIGFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLRNLA 455 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + ++ +D+DK+K +ND G GD VL ++ R+ L+ D++AR G+ F + Sbjct: 456 AAPH-PLVILNVDLDKFKPVNDTYGHVTGDLVLHQVSERLRSCLRDQDLVARQGGDEFIL 514 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I+ + +I + I P + ++I + ASIG A + + E+L+ A++ Sbjct: 515 IITGLASIKEIEQLCARVIARIESPYVINGQDIYIGASIGIALAPQDSMHAEELLRFADI 574 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK+ G N + ++ L AV+++E L Y P R+ ++ G Sbjct: 575 AMYEAKNSGRNQWSFYSSEMNERLMQRSELERFLRQAVKHNEFSLYYQPRYRIEGTQLTG 634 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W+HP G + +F+ +AEE +I AI+ + + + +D +W P + I Sbjct: 635 AEALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTMLQACQDASTWP-----PSLIIS 689 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +NI++ + L E ++ ++ T R++L +E +++ + + + + L+ +G+ Sbjct: 690 VNISAIEFRSQRLIERVRQVLLLTGLPSHRLELEITERIMIEDADGAFKTMMALKTLGVR 749 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L++DDFGT S L+YL PFD +K + S + + + +I+ II + + T+ A Sbjct: 750 LSMDDFGTGYSSLNYLRRFPFDGLKIDKSFIDELAQSHEGQSIVEGIINLGHALSMTVTA 809 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + ++ L + CD +Q + P+ N + L++ Sbjct: 810 EGVETAEQLEYLQTLMCDEVQGYLLGKPMKLNDLSVLIRN 849 >gi|256823240|ref|YP_003147203.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256796779|gb|ACV27435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Kangiella koreensis DSM 16069] Length = 855 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 152/593 (25%), Positives = 286/593 (48%), Gaps = 13/593 (2%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + + AL+ GL +IV+++ I ++ + R + + S +++ Sbjct: 264 LWKWALIIGLGMIVLMLCINGIL-RWQVRKRTRLLVETNVRFNHLLKASPVVLYQLKQDG 322 Query: 426 ---DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 V + ++ + G ++ W+ ++ DR G + +E Sbjct: 323 VGYKPVWVSKNVKRLFGYEPEQLY-SHDWWIGVLYEEDRQKTLDQFKEIF--ITGHMVHE 379 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 +RVR A+ ++ + + SN +G +D+T+ + + + + D LT +P Sbjct: 380 YRVRDAEGNTRYIRDERQLIPQSNHSENEIVGTWSDLTDVYEREDELKFLSHYDPLTHLP 439 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NRQ +R+ ++ S ++ IDID++KKIN+ L VGD V+ + R+ + Sbjct: 440 NRQKLEERIEESIERSDELKEC-FAILSIDIDRFKKINETLSYQVGDAVIARIAERLKHI 498 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L D+LAR+ G+ F ++ + + K++ A + K A+P+ + E E+ VTASIG A Sbjct: 499 LNVDDVLARVGGDDFVFVINDKVDVKKVSSIARKVLKRFAVPLRIDEHELMVTASIGIAM 558 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSEL 720 + +LKNAE+A Y AK +G N E F +M++ L +AVE +EL Sbjct: 559 FPEDGRDPDTLLKNAEIARYSAKDKGRNSFEFFNDQLSEGMHENLMLESALRMAVERNEL 618 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P++ D +VG+EALI+W HP G I +F+ +AEE +I I L++L R Sbjct: 619 VLHYQPLVSFNDFTVVGVEALIRWQHPIQGLIPPYKFIPLAEETGIIGDIGLWVLREACR 678 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 ++ W +NI+ + + L + +++++ +T + R+ L +ES +M + Sbjct: 679 QMVEWDKAGLNVA-RASVNISVQQIETGLLPKQVESVLKETGLAAERLYLELTESTIMQD 737 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 P+++ L + +K+G+ L +DDFGT S ++YL +P D +K + S + I Sbjct: 738 PQQASLAMTEFQKMGVKLAVDDFGTGYSSMAYLKRLPLDRLKIDRSFIKDIGADTNDEVI 797 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++I+ +AK++ +A+ + E + L +GCD Q + P+ + Sbjct: 798 CKAIVQLAKSLGLETVAEGVEEESQAEFLKGLGCDVAQGYLYSKPVPALELTA 850 >gi|330873088|gb|EGH07237.1| sensory box protein/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 705 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 139/584 (23%), Positives = 262/584 (44%), Gaps = 12/584 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H + Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKSHSMILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT++K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITQRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L +A + + +++D +K IN+ G +GD VL+ ++ R+ E + D L R+ G Sbjct: 297 LTQAAVS-RWKLATLTVNLDGFKNINETWGHVLGDQVLLEVSHRLSECINASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ +RK++ +P + + I +TASIG A + + E++ Sbjct: 356 DQFALILMIRVGQPDTRQTLERIRKALRVPFMVEGQSIVMTASIGIALYPEDGEDARELV 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM AK G + + R+ ++ L AVE +VY P + L+ Sbjct: 416 RHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVEKQAFEIVYQPKLNLVT 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I GLEAL++W P +S + F+ + E L +I + ++++R+ I W+ Sbjct: 476 GRICGLEALLRWPRPGQQGVSPAVFVPVLESLGLIGEVGNWVVDRVCAQIAHWQRSGLGL 535 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +N++ + + ++ L ++ ++ +P +++ +ES +M N + L LR Sbjct: 536 -FQVAVNVSGQQISNSSLVADIRQALTSHRVAPQWLEVELTESSLMENTSHTIATLETLR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A ++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLG 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +IA+ + + L CD IQ ++ PL + L Sbjct: 655 LKVIAEGVETPEQLAFLRDNQCDQIQGYLISKPLPLAELETFLS 698 >gi|307824661|ref|ZP_07654885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307734315|gb|EFO05168.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 1028 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 150/586 (25%), Positives = 282/586 (48%), Gaps = 19/586 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 G TV+Q V+ + +D ++A+ S + + D + + I G A+ Sbjct: 438 GKTVLQAVVRDISERKQAEADLRIAAIALE-SLEAIAITDANQVILKVNQAFTRITGYAA 496 Query: 443 GSMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G + +D F + + R Q E R + + + + I Sbjct: 497 EEAIGQTPG---RLLKSDCQSAQFYQAMWKRL-NRDKCWQGEILNRRKNGEVYPQWLSII 552 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + Y+ +DI+++K++ E I AF D LT +PNR+ DRL L SA Sbjct: 553 AATVEGKQVTHYVATFSDISQKKQAEETIHNLAFYDPLTDLPNRRLMQDRLQQALAFSAR 612 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 N ++ ID+D +K++ND G +GD +L+ + R+ ++ D ++RL G+ F II Sbjct: 613 HHN-HGAILFIDLDNFKELNDTKGHHIGDLLLIEIATRMQACVRADDTVSRLGGDEFLII 671 Query: 621 LISENNSLKIAD-----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 L + + + A A +R +I P +L E ++SIG + + + ++T+ E+LK Sbjct: 672 LGELSVAAEEAAVQAETVAEKIRAAIDQPFDLQGHEYHSSSSIGISLFLNHELTADELLK 731 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733 +++AMY AK G N + F ++ + + ++ DL A+ +++L L Y + Sbjct: 732 RSDIAMYQAKRSGRNAIRFFDPATHAAMEIRIALEADLRRALPDNQLKLYYQMQVD-NLG 790 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G EAL++W HP+ G +S ++F+ +AE+ +I I L++LE + +W ++ Sbjct: 791 AIFGAEALLRWQHPEQGMVSPAQFIPLAEDTGLIVPIGLWVLETACSQLKAWELDPDLSY 850 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N+++ + + + AL++KT P ++KL +ES+V+G+ + + L+K Sbjct: 851 LHLAVNVSACQFHQSGFVDQVSALLTKTAIDPDKLKLELTESLVLGDINETIFKMQALKK 910 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 IG+ ++DDFGT S L+YL +P D +K + S + I+++II MA N+ Sbjct: 911 IGVRFSIDDFGTGYSSLAYLTQLPLDQLKIDQSFVRNVAIKPTDAVIVQTIIGMATNLGI 970 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKER 956 +IA+ + E L GC Q P+ +++ Sbjct: 971 EVIAEGVETEEQRDFLESNGCFTYQGFLFGKPVPVEEFESAFIQKH 1016 Score = 76.5 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 101/313 (32%), Gaps = 20/313 (6%) Query: 227 VVLGYISIDFGFLSKLVN-LPSGELLIWRACSEIALSSSLIIFLF----MYLHWNRWHAK 281 V+G + + + + + + W + L + +++F + W + Sbjct: 31 AVVGNVLVALILAAMQWSIVAPPAVTGWLMLLMVTLGARMLLFFAHRRGAPGDDSVWLQR 90 Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341 I+ + I + L + + P +T A + + V + Sbjct: 91 F-RISIAAIGVVWGLASLLMFPPHDLPHQVFLTFALGGMASAAITT-LSIDRVSLLVFTL 148 Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL---IGFTVIQHVLATGYFSQ 398 PA + + + L+ IQ A+ + L ++L I + + Sbjct: 149 PALTAVIVRLL---------LEGTEIQTAMSVMITLFLLLTDMISQLTYRTLRENVMLRI 199 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + S + V S D + +D+ V + + + + G + Sbjct: 200 SVASREQELHSLVDSSPDNIIRYDLDCRAVYVNRMMEMTVDVKPELLIGKTPMESRFDGC 259 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +N++ L + + E V A + +R S+G+I+ D Sbjct: 260 IGVENYQAKLQQVISTGELQ-DIEVLVVAPNGDLRIHHVRFVAERGSDGEIMGAFAFGRD 318 Query: 519 ITEQKKSLEGILC 531 ITEQK++ E + Sbjct: 319 ITEQKQADEAVRH 331 >gi|152990267|ref|YP_001355989.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] gi|151422128|dbj|BAF69632.1| signal transduction response regulator [Nitratiruptor sp. SB155-2] Length = 765 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 136/586 (23%), Positives = 265/586 (45%), Gaps = 10/586 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L +I I + + + A + Q I + A + W++ D + + Sbjct: 184 LELIAITRAINKMLHAIHLYIQKIKQSEMHLAEAQKIANMSSWEYIKDSDTFFCSDQLYR 243 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 ILGL ++L I ++ F ++ + + + + + + + Sbjct: 244 ILGLNMKERL-DWEHFLQMIDPQEKLRFIEEIEEAY-QKGLKFETVVKFYTPKGEKY--L 299 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + + + IGIA D+TE+ K+ + + A+ D LT +PNR SF D L L Sbjct: 300 KNVIKVRKKHNRSTTIIGIAIDVTEEIKAKKQVEFLAYNDPLTSLPNRVSFQDILEK-LS 358 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 A R ++ +DID +K +ND G +GD +L+ + + E L+ D++ R+ G+ Sbjct: 359 KIAQRSKERFALIFLDIDNFKFVNDTYGHEIGDKLLIDIATILKETLRSSDLIFRIGGDE 418 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +++ + +++S+A +V+ S+G A + + + Sbjct: 419 FVVLIPKVETKDSLDIVLEKIKESVAKEYRYGNINFSVSCSLGIAIFPDDSDDIETLTRY 478 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLA-VENSELYLVYHPIIRLMDE 733 A++AMY AK G N F+ + +DL A + EL L + P I + + Sbjct: 479 ADIAMYEAKKSGKNRFVFFKEEMKKYLDHLQQTTQDLRKALKKEDELTLFFQPKIDIQNN 538 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +++G EALI+W+HP+ G ++ + F+ +AE +I+ I+ F++++ R + W + Sbjct: 539 KVIGAEALIRWNHPQKGLLTPNVFIPVAERSDLIEKIDEFVIKKSFRHLQEWSSDKELQN 598 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I + +NI+++ + + + + + PS+++L +E++ M N + +L +++ Sbjct: 599 IVLSLNISARQFRNPKFLDFLDKNLKLYNIDPSKLELEITETLSMENVSHTVNMLEAIKQ 658 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 IG + LDDFGT S L+YL +PFDT+K + S + + I + I +A Sbjct: 659 IGFQVALDDFGTGYSSLNYLKRLPFDTIKIDKSFIDDIDKDPEDYQITKIITDIAYTFRK 718 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 IIA+ + + + L + C Y Q A PL N + + Sbjct: 719 EIIAEGVETKQQERILKDLKCFYAQGYLYAKPLPLNEFKEFITSYN 764 >gi|222109246|ref|YP_002551510.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] gi|221728690|gb|ACM31510.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Acidovorax ebreus TPSY] Length = 1225 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 140/581 (24%), Positives = 249/581 (42%), Gaps = 19/581 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGER---QSLAVLGSGDIVWDWDIVRDRVTTT 431 L +Q A +D +R Q+ + + D + D+ Sbjct: 630 QALERSRFVSNTLQIFAARAAAELQRQTDDQRIRQQASLLDKARDAIIVRDLEHRITFWN 689 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 + G + + G L Y + D + G E + Sbjct: 690 EGAERMYGWSREEVLGRSIATLLYQNPEDFLRATQHVMQH-----GVWSGEILQCDRAGR 744 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 R + N G+ + I DI +K I AF D LT +PNR LDR+ Sbjct: 745 TLEAEGRWTLVRNDRGEPESVLAINADIGTRKHQEREIQRLAFFDPLTHLPNRVQLLDRV 804 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 L + + ++ ID+D +K +ND LG GD++L + +R+ ++ D +AR Sbjct: 805 DQALAKAQRLEQG-GALLFIDLDNFKTLNDTLGHDQGDELLQIVAQRLNTCVRSADTVAR 863 Query: 612 LSGNRFGIIL-----ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 L G+ F +++ S+ + + + ++ P L + T SIG A + + Sbjct: 864 LGGDEFVVLVEQLSAHSDTLAEQAGAVGEKILAVLSAPYALTGYQYRSTPSIGIALFNHA 923 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724 T E+LK A+LAMY AK G N + F S + +R ++ DL A+ E L Y Sbjct: 924 PTTVGELLKQADLAMYQAKTAGRNTLRFFNPSMQHAVAERASLEADLRNALAQKEFLLHY 983 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P I IVG+EAL++W HP+ G +S F+ +AEE ++ + ++L + Sbjct: 984 QPQINAR-GAIVGVEALLRWAHPRRGMVSPGRFIPLAEETGLVLPLGHWVLHTACSVLAD 1042 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W+ + P+ + +N++S+ D + + +++ T +++KL +ES+++ + + Sbjct: 1043 WQRVPALAPLTMAVNVSSRQFRDAGFVDDVAGVLAATGAPAAQLKLELTESLLVEDLAAT 1102 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 + LR +G+ +LDDFGT S L+YL +P +K + S + AI+R+I Sbjct: 1103 IATMAALRALGVGFSLDDFGTGYSSLAYLKRMPLGQLKIDQSFVRDLLTDPNDAAIVRTI 1162 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 I +A ++ +IA+ + L GC Q + P Sbjct: 1163 IGLAASLGLEVIAEGVETSAQRDWLAHAGCAVYQGYFFSRP 1203 >gi|114562745|ref|YP_750258.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114334038|gb|ABI71420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 839 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 150/568 (26%), Positives = 261/568 (45%), Gaps = 12/568 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + + V D + I G + + G Sbjct: 262 RNIAKHKEAQDQLILAANVFQNAVEGVVITDSNGNITEINQAFTDITGYSREEVIGQNPR 321 Query: 452 WLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 L H + F + ++ + G+ E R I I + + I Sbjct: 322 MLSSGRHP--KSFFERLWNTLLVQ--GKWHGEIWNRRKHGAIFPQAITISAVFDKLNIIQ 377 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 Y+ + DI+ QK++ E + A+ D LT +PNR F+ L ++ S + ++ Sbjct: 378 YYVAVFADISAQKQNEEKLKNLAYFDPLTQLPNRMQFMSLLEQEVNHSHRAKK-QLAIVF 436 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +DID +K IND LG +GD++LV L +R+ L D+LARLSG+ F ++L S + + Sbjct: 437 LDIDFFKHINDSLGHVIGDEILVELAKRLSYALSDFDVLARLSGDEFVVMLPSIMGTDSV 496 Query: 631 ADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +R P L + + +TAS+G A + S +L+NA+ AM+ AK G Sbjct: 497 TSSVDRIRSVFERPFILDNTQSVRLTASMGVAIYPSDGDDHDSLLRNADAAMHRAKLDGR 556 Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N+ + S ++ ++ L A+ N + YLVY P ++L D G EALI+W P Sbjct: 557 NNYAFYTESMTKQAVAQLKLQNALHQALVNEDFYLVYQPKLKLSDLSPSGFEALIRWSDP 616 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 +GNIS +EF+ +AE++ +I I L++L+ + W Q M I +N+AS L Sbjct: 617 VYGNISPAEFIPLAEKIGLIWDIGLWVLKAACLQGVEWLTQGKMFE-RISVNVASLQLKR 675 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 N+ + +++++ +T ++L +ES +M +P+ L L +GI+L++DDFGT Sbjct: 676 NDFVDKVRSILLETGLPAKHLELEVTESCMMNDPDAIIRDLKLLGAMGIALSIDDFGTGY 735 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL +P D +K + S + AI +++I + + IIA+ + Sbjct: 736 SSLNYLKKLPIDKLKIDQSFVRDIPHDVNNTAIAKAVIALGHALNLQIIAEGVETVDQAD 795 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 L GCD +Q + P + + + L Sbjct: 796 FLRLNGCDLVQGYLYSKPRLPDELNEFL 823 Score = 43.4 bits (101), Expect = 0.20, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 2/117 (1%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 +W D V + ++ + G + F + Sbjct: 165 MWVKDANGHYVACNKSVERAWRKSTEQIVGKTD--FDLFDPRTANEFIASDKLAISNGST 222 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + E + W+ P+ N+ G + IG+ +I + K++ + ++ A Sbjct: 223 VVVSECEEVDVNFNKVWLETIKAPIYNTQGQLTGVIGMTRNIAKHKEAQDQLILAAN 279 >gi|300692395|ref|YP_003753390.1| hypothetical protein RPSI07_2765 [Ralstonia solanacearum PSI07] gi|299079455|emb|CBJ52130.1| conserved protein of unknown function, eal-ggdef domains [Ralstonia solanacearum PSI07] Length = 903 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 140/575 (24%), Positives = 259/575 (45%), Gaps = 12/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + ++ + ER L V + + + P IL S G Sbjct: 325 AVQKAHIARELQESEERYRLVVDNLTEGIVVQSADGSILACNPSARRILRAGDQSPVGAS 384 Query: 450 RNWLPY--IHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 L + + + + R L + D W+ + P+ Sbjct: 385 HLMLMRRSLREDGSEIPFLERPTRVVLATGRPLLGLTIGLELVDGDVVWVYENVLPIMRP 444 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + NDI + + + + A +D LTG+ NR FL R+ +LD +ATD Sbjct: 445 GDDTPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLSNRAYFLQRMQAVLDEAATDGR- 503 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D +KK+ND G GD +L + +R+ ++ D LARL G+ F ++L Sbjct: 504 QVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQV 563 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + +IA P + E + ASIG A ++ +L+ A+ AMY+A Sbjct: 564 CSLAEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNA 623 Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F R +++ L A+ EL L + PI+ + +IVG E L+ Sbjct: 624 KQNGRNQHRVFTAQLSQRAQRRFQLEQHLRRALSARELSLRFQPIVDAISMDIVGAEVLL 683 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G +S +EF+ +AE+ +I AI ++LE+ R WR P FI +N++ Sbjct: 684 RWHSAELGEVSPAEFIPVAEDAGLISAIGEWVLEQACRQAAHWRKTCA-PDFFIAVNLSP 742 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + D L + ++++ +++ +E ++M + +L L +G+ +++DD Sbjct: 743 RQFGD-GLVPTLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P D +K + S ++G R +++ R+++ MA +++ T+ A+ + Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q +P+ + + L+ Sbjct: 862 LEQAEFLQAAGCDKLQGFLFGAPMTAAAYEERLRR 896 Score = 42.2 bits (98), Expect = 0.46, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 7/148 (4%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRN 451 + + +R V D ++ V +LG ++ + G + Sbjct: 16 GESAPRPLPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSARDIVGRELD 74 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 ++H + R + V + G E ++ D + I P+ G Sbjct: 75 --AFVHEDSVQLARQRREWMVEHGAGLPPVEQKLLRCDGTPVDVEILSAPV--QLGWRTA 130 Query: 512 YIGIANDITEQKKSLEG-ILCNAFQDNL 538 +A DI ++K++ + A L Sbjct: 131 VQVVARDIRQRKRTEQALRESEANYRAL 158 >gi|171057079|ref|YP_001789428.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170774524|gb|ACB32663.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 790 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 159/742 (21%), Positives = 308/742 (41%), Gaps = 17/742 (2%) Query: 218 LIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNR 277 L + A ++ G I L+ LP+ L W +E+ + L L Sbjct: 32 LFYRQSPAALLGGAIGALLVVLALQDALPALWLRSWLLAAELLIVGRLTTTLHYMHGGAE 91 Query: 278 WHAKVGYITFSGIACIA-ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 H+ + + + IA L S + A+ +V + G Sbjct: 92 RHSLARWRQLALVFTIAQGLTWGSLGLMSLAVPTAQDEALILVCLLVIVAGSAALVGTLP 151 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 ++ + + + + + + + V + + + Sbjct: 152 LLVPLFGVLTLLPITLVMALGSSGAQHFLAFCSFTFMLTVTVSLPRSMQRAIRARHSASL 211 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 +Q +R +A + WD + + +LGL R+ + + Sbjct: 212 AQ--RDTLQRLEMAEQMAHVGHLVWDAGAAQAQLSAGAQRMLGLDGVGALEH-RDIVELV 268 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR+ R ++ + + + +L+YE +V +++ + ++G + R + Sbjct: 269 VPADRERVRLLIRNSLQQTQSQLRYETQVSTPAG-VRDLMVVQHLETGADGRVTRLMSTL 327 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D +E K++ + AF D LTG+ NR F+ L +L ++++D+D + Sbjct: 328 QDTSELKQTQRELQKLAFNDPLTGLGNRAWFMQALAGMLRQGERS-----ALLMLDLDHF 382 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD +L +R+ +L LARL G+ F IIL + +S A A A Sbjct: 383 KAINDTLGHHAGDLLLGMAAQRLQRVLGDTASLARLGGDEFAIILPAIASSAAAAQQAQA 442 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + ++ P ++ E+ V+ASIG A + +L+ A++AM+ AK G + + Sbjct: 443 LIDTLTRPFSVAGVEVYVSASIGIAVSPQDADDTEALLRCADVAMFDAKGLGRAGYQFYA 502 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + S +RV+++ DL A+E EL L Y P + + + +VG EAL++W H + G + Sbjct: 503 AQQSERARERVLLEGDLRRAIERGELELHYQPKVDMRTDRVVGAEALLRWHHAERGMVPP 562 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPPIFILINIASKDLLDNELC 811 F+ +AE+ +I I ++L W R + I +N++ + Sbjct: 563 DRFIPVAEDTGLIIPIGEWVLRTACTAATHWNRTRRARGQEALKIAVNLSPRQFWSPHFV 622 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++A++ +T P I+L +ES+++ + +L L ++G +L +DDFGT S L Sbjct: 623 AMVRAVMHETGCRPEWIELEITESLLIDTRGQVSEILAELSRLGFTLAIDDFGTGYSALG 682 Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P T+K + S + + R +++R+I+ M +++ ++A+ + ++ L Sbjct: 683 YLTRFPISTLKIDRSFVNEVATHPARASLVRAIVAMGHSLQLELVAEGVETHEQVQVLRE 742 Query: 930 MGCDYIQDSHVASPLGFNSILK 951 MGC Q P Sbjct: 743 MGCQLAQGWLYGRPQARALFEA 764 >gi|94314579|ref|YP_587788.1| hypothetical protein Rmet_5660 [Cupriavidus metallidurans CH34] gi|93358431|gb|ABF12519.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF domains [Cupriavidus metallidurans CH34] Length = 839 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 147/580 (25%), Positives = 253/580 (43%), Gaps = 12/580 (2%) Query: 390 VLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 A + + LA + D V D+ P + G Sbjct: 263 RTALHERDEALRRSNYHLRLADRVFESTLDGVMVTDLNGVIEQVNPAFTQLTGYTLDEAI 322 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G L ++ + G + E R + + + + + + N Sbjct: 323 GRTPRMLSS-GRQGPSFYQEMWSQLRAQ--GHWKGEIWNRRKNGELYLEHLSVSSICNQA 379 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G+ Y I +DIT ++ + E + A D LT +PNR F +RL + A + R Sbjct: 380 GECTHYAAIFSDITHRRIAEERLNHLAMHDPLTDLPNRTLFSERLKQA-IIRARRASRRV 438 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ +D+D++K IND +G GDD L + R+ ++ D +ARL G+ F I++ + Sbjct: 439 GVLFLDLDRFKMINDTMGHGTGDDALRVIAMRLKHAVRESDTVARLGGDEFTIVVEEIED 498 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 +A A + + PI+ R + VT SIG + + ++L A+ AMY AK Sbjct: 499 IRHVAHIAQVLLDVVGQPIDAAGRSVFVTPSIGISIYPDDGTDQQQLLMQADRAMYEAKQ 558 Query: 687 RGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N F + + ++ +L A+ E L Y PI L IV +EAL++W Sbjct: 559 EGKNTFRFFATQMTSSAMESMALECELRRALTRREFRLHYQPIYDLGSGRIVSVEALLRW 618 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP G +S F+ +AEE ++ I ++L R +W + +N++++ Sbjct: 619 QHPTRGLLSPGAFIDVAEESALVVPIGAWVLREACRQGAAWLRSGFEFG-RMSVNLSARQ 677 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + + ++S P ++L ES+ M + L+LG L + G+ L +DDFG Sbjct: 678 IRHEHFLHDVSDVLSDAGMQPEHLQLELVESMAMTGNGVTELVLGELARRGVGLAIDDFG 737 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S +YL +P DTVK + S +T E+ AILR+I+ MA+ + T++A+ + Sbjct: 738 TGYSSFTYLQTLPVDTVKVDRSFLTAVIERERDGAILRAIVAMARALGLTVVAEGVENIA 797 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 ++ L +GCD Q +A P ++ L PL+ + Sbjct: 798 QLQFLREIGCDRAQGFLLARPGPAEALTALGNAAHPLIAS 837 >gi|319427864|gb|ADV55938.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens 200] Length = 1487 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 137/564 (24%), Positives = 260/564 (46%), Gaps = 12/564 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + + A + + V + + I+G + G + + Sbjct: 925 QRLLEDEVKLLAQAFENTSEGVLILESNENIRVANHAAQQIIGSGDTDLVGLSFSQFLRM 984 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D + + E + + + + M +N Y+ + Sbjct: 985 N----DGLSYEIKQLLDTET-SWTGERELVNQRGHLCPVWLNVSMMQTANIKEHYYVVVF 1039 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K++ + A D LTG+PNR F +RL + ++ + ++ +D+D++ Sbjct: 1040 SDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLLQSIQVAQQTGE-KLALLFLDLDRF 1098 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV + R+ + +L R G+ F I+L + +N +I A Sbjct: 1099 KHVNDSYGHSMGDALLVEASNRLQSCISSEHLLCRFGGDEFVILLRNASNIDEINHIAER 1158 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + I P L RE ++ SIG + W I +KNA+LAMYHAK G + + + Sbjct: 1159 LLAQIVAPFKLFGREFYISTSIGISIWPDDAIQPEAFIKNADLAMYHAKEEGRGNFKYYS 1218 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNIS 753 ++ + ++ DL A+E E L Y P I ++ + +G+EALI+W HP+ G I Sbjct: 1219 SERNAQALYHLRLEADLRKAIEREEFELYYQPQIDIVQGDKFIGMEALIRWRHPQEGFIR 1278 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AE +I I+ ++L + W P + +NI++ + EG Sbjct: 1279 PDIFIKVAESCGLIVDIDRWVLRQACLHGAKWIKAY-SEPFKLSVNISAVHFRQADFIEG 1337 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q ++ +T PS + L +E V+M + ++ L +L+ +GI + +DDFGT S L+YL Sbjct: 1338 IQQILLETQMPPSSLGLEITEGVLMKELQVAKSHLNQLKSLGIEVAIDDFGTGYSSLAYL 1397 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + +T+K + S + AI+ SII +A+N++ ++A+ I ++++ G Sbjct: 1398 RHFDVNTLKIDRSFLIDIATNTADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1457 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C IQ + A P+ + Sbjct: 1458 CYVIQGYYFAKPMSVRDFELYIAA 1481 Score = 98.1 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + V + +Q + +R ++ GS +W+W + ++LG Sbjct: 786 FAWYRQRQVNSFMLMNQALTESDDRLRQSLRGSDSDLWEWHKDTQKFHLDNR-GSVLGKH 844 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + + + IH DRD +S + R + E+R + + + W+ +R RP Sbjct: 845 TNEIIVSLEDLP--IHPLDRDKVLAQWNSMLVGEVDRFEAEYRYQHREGHWGWLRVRGRP 902 Query: 502 MSNSNG--DILRYIGIANDITEQKKSLEGILCNA 533 +S + +I R GI +DIT Q+ + + A Sbjct: 903 ISRNKHTQEIERAAGIYSDITVQRLLEDEVKLLA 936 >gi|157377503|ref|YP_001476103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] gi|157319877|gb|ABV38975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] Length = 1076 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 145/580 (25%), Positives = 276/580 (47%), Gaps = 16/580 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + + LA + + SLA S + + D P I G + Sbjct: 487 IARMSLALNLMLKERLKANRQLSLAAAVFDYSAEGIMVTDQDNHIELINPAFTQITGYSL 546 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L +F + + + + E + D Q + + I + Sbjct: 547 EDVKGRNPSVLNS--NQQPHHFYDSMWKSLKE-LDKWEGEIWNKRKDGQVYPEYLAITVV 603 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G+I +IG+ DI+ +KK + I D LT + NR + ++ + ++ Sbjct: 604 RDEAGEITHHIGLFLDISNRKKYEQDIWYKTNYDPLTNLANRHQYSLKIQQEMSVAKQQS 663 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + ++ ID+D++K ND+ G AVG+++L + R+ LL D +ARLSG+ F IIL Sbjct: 664 Q-QLAILFIDLDRFKYTNDIYGHAVGNELLCLVAARLESLLGKHDFVARLSGDEFVIILS 722 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ F + ++ P L E+ ++ASIG + + + + +NAE AMY Sbjct: 723 NVKRRNEVRQFVENVIDHLSSPFGLSNNELMISASIGVSLFPENGADGELLTRNAETAMY 782 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N F + + RV +++ L AV E L Y PI+ + ++G+EA Sbjct: 783 QAKGDGRNSYRYFSANMNSNMLERVQLEQRLRRAVLQEEFCLFYQPIVNMDGRTVIGVEA 842 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W PK+G IS +F+ +AEE +I+ I ++L++ D+ W M I + IN+ Sbjct: 843 LIRWRDPKYGLISPDKFIPVAEETGLIEPIGEWVLQQALTDLSHWHANGFM--INMAINV 900 Query: 801 ASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 + + L+++ + +++ K +P + + +ES++M + E+ + L +R +GI Sbjct: 901 SGRQLINSNQVSFDSLLDSMLQKHKIAPRYLHIEITESMLMDDTEQCQQKLEAIRDLGID 960 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT S LSYL P +K + S + + ++++I+ M +++E ++A Sbjct: 961 IYIDDFGTGYSSLSYLKRFPISVIKIDKSFVDNMLERQSDANLIKAIVMMGQSLELKLVA 1020 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + I E + L +GC++ Q ++ P + + +LL + Sbjct: 1021 EGIETEEQWEFLQNLGCNFGQGYLISRPRPIDELTELLAD 1060 >gi|221064881|ref|ZP_03540986.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] gi|220709904|gb|EED65272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] Length = 900 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 144/611 (23%), Positives = 273/611 (44%), Gaps = 24/611 (3%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---------GIFSDGERQSLA--- 410 + ++ A + + H A+G + ER LA Sbjct: 282 GSMLVLTARLLCFDGLYRWFRARGQAHRDASGRLIRISGLLSDQTASREADERSRLASTV 341 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILD 469 V + + V D ++ +LG + M G R + H D+ + + Sbjct: 342 VDNTIEGVVVTDANSRILSVNHAFTRLLGFSEAEMLGKTPRMFKSGRH--DKAFYDAMWA 399 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 S + G Q E R + + + + + ++N + Y+ + DI+ +K + + Sbjct: 400 SM--HATGHWQGEIWNRRKNGEVFPERMSLSAVRDANDKVTHYVCMFTDISAEKAREQQL 457 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A +D LTG+PNR F L + LS ++ NLR V++ +ID++K +ND G ++GD Sbjct: 458 DFLAHRDTLTGLPNRAQFTRMLGEAVALSQSN-NLRMAVLLFNIDRFKDVNDSYGHSIGD 516 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-L 648 +VL + ++ L+ DI+ RL+G+ ++ S + A + + P Sbjct: 517 EVLRHVAVQMQGALRHGDIIGRLAGDEICVVAQSICGRDSAVEVAERLMAAAGQPWTTPD 576 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706 + V+ S G + +T+ ++L+ A A+Y AK RG N F + +R+ Sbjct: 577 GLSVVVSVSAGICLYPEHALTAGDLLQGAHAAVYGAKARGSNAWCFFHENMTQAARERLA 636 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A++ + L Y P I L ++G EAL++W P+ G IS + F+ +AE + Sbjct: 637 MEARLRRALDLGHMRLHYQPQIDLATGRLMGAEALVRWLDPEDGLISPARFITVAENSGV 696 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + L++L R WR P + I +N++ L ++ ++++ + S Sbjct: 697 IGPLGLWVLGEACRQGQQWRAAGL-PDLTIAVNVSLHQFLLTDIAGATARALAESGFPAS 755 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ES + PE + +L RLR++G+ L +DDFGT S L++L P D +K + Sbjct: 756 LLELEITESALAEKPEEALAVLNRLRELGLRLAIDDFGTGYSSLAHLKRFPLDLLKIDQG 815 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + + I S+I + + ++A+ + + + L + GCDY Q + PL Sbjct: 816 FIRDIPHSADDMTISSSVIALGHAMGLKVLAEGVETQEQLSFLQQKGCDYFQGYFCSRPL 875 Query: 945 GFNSILKLLKE 955 +LL++ Sbjct: 876 PAEDFTRLLEQ 886 Score = 102 bits (255), Expect = 3e-19, Method: Composition-based stats. Identities = 43/329 (13%), Positives = 102/329 (31%), Gaps = 19/329 (5%) Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA 280 + ++ G L+ ++ + + + ++ + A Sbjct: 16 VALYLCAGMLWLGAQAGVLN-YFDVSLNRQSLRWQIGLFIVWLLATALVALWFMQRKTRA 74 Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL- 339 + + + + V A I A+ L ++G + VL Sbjct: 75 DQRGRETAQELELVVRHAPA-GMARVHVGGAEIVWANAKLAGWLGRSVESLRGQDFRVLV 133 Query: 340 --------------LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 L+ F A T ++ + + V + + Sbjct: 134 PVHDRDEVVLQLQRLLDGSTDYFQVLRQCVNAETGKVTPVLCTTSRVAASGVGGPVALVC 193 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 V+Q + + LA+ GSG+ VW+WD + R+ + ++ +L + Sbjct: 194 VLQDLSEMVSARNAMMRSETMLRLALEGSGNGVWEWDALERRLNFSTGMSALLRYQGQDL 253 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 ++ +H D R + + L R+ D + W R + ++ Sbjct: 254 -AREFDFHQRLHPEDAATARAQAEQALEQ-GSMLVLTARLLCFDGLYRWFRARGQAHRDA 311 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAF 534 +G ++R G+ +D T +++ E + Sbjct: 312 SGRLIRISGLLSDQTASREADERSRLAST 340 >gi|302343686|ref|YP_003808215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfarculus baarsii DSM 2075] gi|301640299|gb|ADK85621.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfarculus baarsii DSM 2075] Length = 1065 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 142/585 (24%), Positives = 262/585 (44%), Gaps = 20/585 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDG----ERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIAT 436 + + +A + +D ++ LA + + V + T Sbjct: 484 WYSAEEKIAGLMLYLELITDKKKAQDQLDLAFKFFDNAIEGVMVTNAEGVIETVNRGFTI 543 Query: 437 ILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 I G G L H + G E R + + Sbjct: 544 ITGYNPDEAIGKTPRLLRSDHHGPEFYKAMWQSIRQH-----GEWSGEIWNRRKNGEAFL 598 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 I ++ G++LRY+ I +DIT+ + S E I A D LT +PNR F+DRL Sbjct: 599 EWQTIMAQRDAEGNVLRYVSIFHDITDVRLSEEKIEYQANYDALTDLPNRTLFIDRLNLA 658 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 +D + + V+ +D+D +K +ND LG+ +GD ++ + R+ + + R G Sbjct: 659 IDQARAAKQM-VAVISLDLDNFKNVNDTLGLPLGDQLIKLVGHRLAAMDGPSVNVGRQGG 717 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + + I+ + + + A P +L +E+ +T+S+G + + + ++ +L Sbjct: 718 DEYLIMAEGLTHPRQGVKVVHDISALFAEPFHLAGKELFLTSSMGLSFYPNDGADAATLL 777 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 KNA+ A++ AK RG N F DR+ ++ L A+E E + Y P + L D Sbjct: 778 KNADTALHQAKLRGKNTYHLFEPRLNAMVSDRLNLENRLRKALERQEFLIYYQPKVDLRD 837 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + G+EALI+W P G + F+ +AEE +I I ++L+ + WRD+ P Sbjct: 838 GRMKGMEALIRWQSPDEGLVPPDMFIPLAEETGLIVPIGQWVLDAACQQAKLWRDKY-DP 896 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +N++ + + ++ + +S + +P ++L +ES+V+ N + +L RL Sbjct: 897 ELRVAVNLSPRQFQEVDMMSLVSYALSNSGLTPDGLELEITESLVLPNLNEASSILKRLA 956 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 G+++T+DDFGT S LS+L +P D +K + S + + + +II MA ++ Sbjct: 957 DWGLTITMDDFGTGYSSLSHLKNLPLDYLKIDKSFIMDIKSEGEDATLPGTIISMAHSMG 1016 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + + L R+ CDYIQ + PL +LL Sbjct: 1017 IGVIAEGVETQAQLAILRRLNCDYIQGYFYSRPLPERQFEELLAN 1061 Score = 54.2 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 5/178 (2%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 + + V V++ + Q + + L V + Sbjct: 343 LAKHQSGRLFWVEISLQKTVYQGKTQLLAVVRDIDQQKRDQQTLQTQRHLLELFVEHAPA 402 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 + D V + GL + G I N + ++ + + Sbjct: 403 SIVMLDSDLRFVMGSKAWVDSFGLRGQDLTGRQLYE---ILPNLPERWKAVYKRCLDGAV 459 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++ + + D Q W RP ++ I + IT++KK+ + L AF Sbjct: 460 EHMEEDI-LDRPDGQVDWCRWECRPWYSAEEKIAGLMLYLELITDKKKAQDQ-LDLAF 515 Score = 51.9 bits (123), Expect = 5e-04, Method: Composition-based stats. Identities = 23/212 (10%), Positives = 59/212 (27%), Gaps = 32/212 (15%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWL 453 + + + D ++ D + T+ G A + + Sbjct: 254 EAERALRESRQNYLSIFNSVNDAIFVHDSESGVILEVNQRCETLFGYARAQLLALSVADI 313 Query: 454 PYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + N + + G +E+ + + W+ I ++ G + Sbjct: 314 SAG--DAHSNQQAAWEKIQSAIEGGAQVFEWLAKHQSGRLFWVEISLQKTV-YQGK-TQL 369 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + DI +QK+ + + R + +++++D Sbjct: 370 LAVVRDIDQQKRDQQTLQTQ-----------RHLLELFVEHA----------PASIVMLD 408 Query: 573 ID-KY----KKINDVLGIAVGDDVLVSLTRRI 599 D ++ K D G+ D L + Sbjct: 409 SDLRFVMGSKAWVDSFGLRGQDLTGRQLYEIL 440 >gi|228988575|ref|ZP_04148662.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771192|gb|EEM19671.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 735 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 148/566 (26%), Positives = 273/566 (48%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R + D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYTSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L R L E R + + ++++ I + P N +++ G Sbjct: 232 FIDSKDHDLLKKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + T N VM +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKKILNTAQTSAN-DVAVMFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIQGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F +++ ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSQLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732 >gi|134288328|ref|YP_001110491.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia vietnamiensis G4] gi|134132978|gb|ABO59688.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia vietnamiensis G4] Length = 884 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 133/569 (23%), Positives = 258/569 (45%), Gaps = 10/569 (1%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + I R + D V+ D V + G A + Sbjct: 318 RQLRQLARRTAAIEESERRFDRVLQELTDAVYVRDRDGRIVVANRKFGLLFG-AEDTRSL 376 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +N + + + + + + + E + + + +G Sbjct: 377 VGKNIVELLAHTTKQMVAEVNNRVLNSHGAPMSLEIETTTHS-AVLPIEYTFSAV-DISG 434 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + D+T +++ ++ A D +TG+PNR+ ++DRL+ L S D Sbjct: 435 Q-SHVLCQMRDVTTRRQYEAQLVKQATFDEITGLPNRRLYIDRLSNALHRSKRD-GTGCA 492 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 VM ID+D +K++ND LG GD +L++ +R+ LL+ D +AR G+ F +++ + Sbjct: 493 VMFIDLDHFKRVNDTLGHPFGDQLLIAAAQRLSGLLRPGDTVARFGGDEFVLLMSDFTDP 552 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ A + ++ A P + R I+V AS+G + + +L++A+ AMY AK Sbjct: 553 MECRIVAEGIVEAFAAPFEVAARSISVGASVGVSVFPGDGTEPDILLQHADTAMYEAKSA 612 Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + F D + I + A+ +E+ ++Y PII + EIV EAL +W Sbjct: 613 GRSGFCFFNHDMNARVHDMLRIDARIRSALARNEISVLYQPIIDPVTREIVKAEALARWH 672 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 G++ +F+ +AEE +I I ++L+ + W + PI + +N+++K Sbjct: 673 SEDLGHVPPDKFIPVAEENGLIAQIGDWVLQEACMNAAKWSKELA-SPITVSVNVSAKQF 731 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + A + + ++L +E V++ + E + + LR+IG+ L+LDDFGT Sbjct: 732 DDPTFVDSVFAALETSKLPAHLLELEITERVLISDDETALETISALREIGVGLSLDDFGT 791 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL P +T+K + + + + R+II MAK+++ +IA+ + + Sbjct: 792 GYSSLSYLTKFPLNTIKIDRAFVRDLDHDEQTQNLTRAIIAMAKSLDLKLIAEGVETQEQ 851 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 +L GC+Y+Q + P+ + ++ L Sbjct: 852 ADKLVLYGCEYLQGFYFGRPMTSSELIDL 880 >gi|229118843|ref|ZP_04248192.1| Sensory box protein [Bacillus cereus Rock1-3] gi|228664644|gb|EEL20137.1| Sensory box protein [Bacillus cereus Rock1-3] Length = 892 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 182/819 (22%), Positives = 333/819 (40%), Gaps = 70/819 (8%) Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260 + I L + + +L A+ + ++ YI + GF K + S L + I Sbjct: 78 AMEITLFLHSLSICDQVLFSYEALPFFIIQYILLFSGFAIKFIKHYSIRGLAQFSFDSIF 137 Query: 261 LSSSLIIFLFMY-LHWNRWH-AKVGYITFSGIACIAILFCMS--------FYYPMVTASI 310 + I F + L + +H G L + Y + I Sbjct: 138 IVIMNIYFTLTFILDLSSFHTLTKDTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLI 197 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 T+ + Y F + G+K LI ++ I + + K + ++ Sbjct: 198 IGFTIILVYGYIQLFQLNTGIKTSAEFSYLIHTASILLIGLSSILYILDKPMQHETKTKY 257 Query: 371 LVGGLVLIVI-------------------------------------------------L 381 V ++ Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNKVLIDT 317 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q + + +R D V+ ++ + ++ Sbjct: 318 YEQLTTQLEDEVEEGASALSKSEQRYKSLFEDHPDAVFSLNMHGVFQQSNTACESLF--T 375 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + L +I D D + L R L E R + + ++++ I + P Sbjct: 376 AYYCEVASYSLLHFIDPKDHDLLKRALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N +++ GIA DIT + + + AF D LTG+PNR+ F L TIL+ + T Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTS 492 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 N VM +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L Sbjct: 493 AN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A + + P + + E++VT SIG A + +E++KNA+LAM Sbjct: 552 PDMYSEKSAVFIAEQILTILNKPFFIKDEELSVTPSIGIAMYPDYGTDVTELMKNADLAM 611 Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F +++ ++ +L A++ +E +L Y P + ++I+G E Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIEFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HPK G +S ++F+ +AEE I + ++L + W +Q + + +N Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACSEAKRWHNQ-GFSHLKVGVN 730 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ +L + ++ +T P + + +ES+ + + L +L+ +GI ++ Sbjct: 731 LSVVQFNHTDLIPTISKVLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P +T+K + G + AI+ SII ++K + +IA+ Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEG 850 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E K L CD+IQ ++ P+ + LL ++ Sbjct: 851 VETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWMLLHKK 889 >gi|170729083|ref|YP_001763109.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908] gi|169814430|gb|ACA89014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella woodyi ATCC 51908] Length = 1074 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 147/575 (25%), Positives = 268/575 (46%), Gaps = 18/575 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + Q + + + +LA S + + D P I G Sbjct: 483 IAQMSQSLNLMLKERLKANNQLNLAAAVFNYSAEGIMVTDKDNCIELVNPAFTQITGYTL 542 Query: 443 GSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G + L + + + S + + + E + + Q + + I Sbjct: 543 EEVKGKKPSMLKSDMQP---TGYYQSMWSSLEQ-SDKWEGEVWNKRKNGQVYPEYLAITV 598 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + G+I+++IG+ DI+ +KK + I D LT +PN + RL + S Sbjct: 599 VRDEAGNIVQHIGLFLDISNRKKYEQDIWYKTNYDALTNLPNHHLYTTRLQQEILQSKQR 658 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + + ++ ID+D++K IND+ G +G+++L + R+ LL D +AR SG+ F II Sbjct: 659 SS-QLAILFIDLDRFKYINDIYGHNLGNELLRLVAARLEYLLDKHDFVARYSGDEFVIIK 717 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 ++ F ++ K I+ P +L E+ ++ASIG + + + +NAE AM Sbjct: 718 TQVETEEQLKKFTKSVLKHISSPFDLSHNELMISASIGICLYPDNGDDPELLTRNAETAM 777 Query: 682 YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G ++ F + R+ +++ L AV E L Y PI+ L D I+G+E Sbjct: 778 YKAKGDGRSNYRYFSPEMNANMLERIELEQRLRRAVLQKEFCLNYQPIVTLNDRSIIGVE 837 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W PK+G I +F+ +AEE +I+ I ++LE+ D+ SW Q M I + +N Sbjct: 838 ALIRWQDPKFGLIPPDQFIPLAEETGLIEPIGEWVLEQALIDLHSWHSQGYM--INMAVN 895 Query: 800 IASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 ++ + L++ + L+ K + + +ES++M + E+ L +R G+ Sbjct: 896 VSGRQLINGNQISFNRLISKLLKKYGIDAKYLHIEITESMLMEDREQCLHALEAIRDHGM 955 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 + +DDFGT S LSYL P +K + S + ++++II M K++E ++ Sbjct: 956 DIYIDDFGTGYSSLSYLKSFPISVIKIDKSFVDNMLECPSDANLIKAIIMMGKSLELKLV 1015 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 A+ I E + L +GCD+ Q ++ PL + + Sbjct: 1016 AEGIETEKQLAFLRSLGCDFGQGYLISRPLPNHEL 1050 >gi|119477934|ref|ZP_01618034.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator [marine gamma proteobacterium HTCC2143] gi|119448847|gb|EAW30089.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator [marine gamma proteobacterium HTCC2143] Length = 722 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 146/582 (25%), Positives = 280/582 (48%), Gaps = 16/582 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + V S DI+ D I ++L + G + Sbjct: 140 SNQVMQKKLNQSERLHRFIVNNSPDIIMILDKNGLFCFFNSKIESLLNFGKIDLVGKHIS 199 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPM-----SN 504 + D + + + + G + ++ + + + P+ +N Sbjct: 200 --SIVEDEDLEKANYFFEYALSGKAGIQSMDLALKSNNPGHSKRHFELSLCPIEEHGKTN 257 Query: 505 SNGDI-LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 NG+ R G A DITE+ ++ I A+ D LT +PNR F DRL+ ++ + N Sbjct: 258 VNGNQRYRIYGTARDITERLEAEAFINFQAYHDLLTRLPNRALFKDRLSLAIEQAQRS-N 316 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + VM ID+D++K IND LG +VGD +L ++ R+ ++ D L+R G+ F ++L Sbjct: 317 TQLAVMFIDLDRFKIINDSLGHSVGDRLLQAVAGRLQGCIRKGDTLSRFGGDEFTLLLPD 376 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 N+ A + S+ P +L++ ++ + ASIG A + ++KNA++AMY Sbjct: 377 VNDISAAIHIAEKILSSLKQPFDLIDHQVHIGASIGIALSADADQGIDALIKNADIAMYR 436 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 K G + + F ++R+ +++D+ A++N E + Y P I D +I G+EAL Sbjct: 437 VKKTGKDGYQFFTNEMHTASTERLTLEQDMRRAIDNDEFEICYQPQINTHDLQICGVEAL 496 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W+HP G +S ++F+ +AE+ +I I+ L + R+I ++ Q +MP + + +N++ Sbjct: 497 IRWNHPTLGRLSPADFIPVAEDCRLIIEIDKMTLRKACREIRQYQ-QKSMPDLRLAVNLS 555 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + E + + + Y P ++L +E+++M + + L L GI L++D Sbjct: 556 PLMIEKTHFVEDILKTLEEEQYPPELLELEITENILMTDRQDVIKKLLILASKGIQLSID 615 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL +P +T+K + S ++ + I+I+ +I+ MAK ++ ++IA+ + Sbjct: 616 DFGTGYSSLSYLQTLPVNTLKIDRSFISEIRSVDDDISIVNAIVSMAKGLKMSLIAEGVE 675 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + + L+ +GC +Q + + + L+K Sbjct: 676 TKEQLDYLSGLGCHVVQGFLFGQATQMKDVERQFHQNLTLLK 717 >gi|207724828|ref|YP_002255225.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] gi|206590053|emb|CAQ37014.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] Length = 914 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 144/580 (24%), Positives = 271/580 (46%), Gaps = 11/580 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + +G+ ER LAV + V + + IL + SG + G Sbjct: 329 AIQKDTTERGLAESEERYRLAVSHLNEGVLIQTLDGVVLAANASAERILRVRSGQLVGRN 388 Query: 450 R--NWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNS 505 R + + +D L S + + G L + + + W + I P+ Sbjct: 389 RFDMMQRVVDEHGKDVALDALPSKLVRQSGEPILGRIYGLLLKTGELIWARMNIIPIRRH 448 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + DIT+ K++ + + A D LTG+ NR F+ L + ++ + D++ Sbjct: 449 GDAAPTSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERA-RDESR 507 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + +D+D++K +ND G A GD +L S R+ + + D++ARL G+ F I++ Sbjct: 508 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 567 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++IA A + ++ P + + + SIG A + I+ +++L++A+ AMY A Sbjct: 568 VEGMRIAQLAERLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGTDLLRSADAAMYRA 627 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + + + ++ L A +NSEL LVY P L IVG EAL+ Sbjct: 628 KQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEALL 687 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+ K G +S EF+ +AEE +I I ++L R ++W + +N+++ Sbjct: 688 RWNSVKLGAVSPVEFIPVAEETGLIVPIGEWVLRRACEQAVAWYQALGY-DFRMAVNLSA 746 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ ++ +++T P+ +++ +ES++MG + R + L GI +++DD Sbjct: 747 RQFQTGDVVPMIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 806 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P VK + S + G +A+ +I+ MA+ + T+ A+ + Sbjct: 807 FGTGYSSLSYLQRFPISNVKIDRSFILGIPSDPDSVALTEAIVAMARALGMTVTAEGVED 866 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++ L + GC IQ ++ P+ + +LL+ +V Sbjct: 867 ADQVEFLAKAGCQEIQGYYIGKPVTADGFDRLLRAHLAVV 906 >gi|300705049|ref|YP_003746652.1| hypothetical protein RCFBP_20886 [Ralstonia solanacearum CFBP2957] gi|299072713|emb|CBJ44066.1| conserved protein of unknown function, eal-ggdef domains [Ralstonia solanacearum CFBP2957] Length = 903 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 142/575 (24%), Positives = 261/575 (45%), Gaps = 12/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447 + + + + ER LAV + + + P IL G S Sbjct: 325 AVQKAHIVRELQDSEERYRLAVDNLTEGILVQSADGTILACNPSARRILRAGDTSPVGMS 384 Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + + + + + R L + D W+ + P+ Sbjct: 385 HLMLMRRSLREDGSEIPVLERPTRVVLSTGRPLLGLTIGLELVDGDVVWVYENVLPIMRP 444 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + NDI + + + + A +D LTG+ NR FL R+ +LD +ATD Sbjct: 445 GDDTPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDGAATDRR- 503 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D +KK+ND G GD +L + +R+ ++ D LARL G+ F ++L Sbjct: 504 QVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQGDTLARLGGDEFVVLLDHV 563 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + +IA P + E + ASIG A ++ +L+ A+ AMY+A Sbjct: 564 RSLDEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNA 623 Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F R +++ L A+ EL L Y PI+ + IVG EAL+ Sbjct: 624 KQNGRNQHRVFTERLSQRAQRRFQLEQHLRRALAAQELSLRYQPIVDAISMGIVGAEALL 683 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G++S +EF+ +AE+ +I AI ++LE+ R WR+ P FI +N++ Sbjct: 684 RWHSAELGDVSPAEFIPVAEDAGLITAIGEWVLEQACRQAAHWRNTCA-PDFFIAVNLSP 742 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + D L + ++++ +++ +E ++M + +L L +G+ +++DD Sbjct: 743 RQFGD-GLVPTLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P D +K + S ++G R +++ R+++ MA +++ T+ A+ + Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFISGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q +P+ + + L+ Sbjct: 862 LEQAEFLQAAGCDKLQGFLFGAPMTAAAYEERLRR 896 Score = 39.9 bits (92), Expect = 2.1, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 7/141 (4%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458 + +R V D ++ V +LG ++ + G + ++H Sbjct: 23 LPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSAHDIVGRELD--AFVHE 79 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + R + + G E + D + + P+ G +A D Sbjct: 80 DSMQLARQRREWMIERGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAVQVVARD 137 Query: 519 ITEQKKSLEG-ILCNAFQDNL 538 I ++K++ + A L Sbjct: 138 IRQRKQAEQALRESEANYRAL 158 >gi|229158909|ref|ZP_04286966.1| Sensory box protein [Bacillus cereus ATCC 4342] gi|228624520|gb|EEK81290.1| Sensory box protein [Bacillus cereus ATCC 4342] Length = 735 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 148/566 (26%), Positives = 273/566 (48%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R + D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYTSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L R L E R + + ++++ I + P N +++ G Sbjct: 232 FIDSKDHDLLKKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + T N VM +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSAN-DVAVMFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIQGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F +++ ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSQLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732 >gi|307824075|ref|ZP_07654302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacter tundripaludum SV96] gi|307734859|gb|EFO05709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacter tundripaludum SV96] Length = 1780 Score = 519 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 146/600 (24%), Positives = 272/600 (45%), Gaps = 31/600 (5%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIA 435 I +I V+ V + ++ ++ E +A S + + D + + Sbjct: 1190 IPKIINNKVVGRVWSFRDVTEQKQAEAE-LRIAATAFESQEGMSITDANQTILKINKAFT 1248 Query: 436 TILGLASGSMHGPIRNWLPY----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 I G + + G L +H F ++L + G + E R + + Sbjct: 1249 RITGYSPEEVIGKTHAMLNSGRQDVH------FYSVLQHTLKQD-GYWEGEIWNRRKNGE 1301 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + I +S++N I Y+ DIT+ K++ E I A+ D LT +PNR+ +RL Sbjct: 1302 IYPQWLSITTVSDANNQITNYVAAFTDITKDKEAEETIHNLAYYDPLTALPNRRLLWERL 1361 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 +++ D + ++++D+D++K +ND +G GD++L + RI L+ D++AR Sbjct: 1362 KHGIEVERRDGK-QLALLMLDLDRFKAVNDSMGHLAGDELLQQVAARIKARLRDVDMVAR 1420 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-----------REITVTASIGF 660 L G+ F ++L + A A + ++ P LL+ R++ + ASIG Sbjct: 1421 LGGDEFIVLLEDITHPEDAARVAENIVADLSKPFQLLKNNSACPDPELSRKVRIGASIGI 1480 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENS 718 + + + +L NA++A+Y AK G F +R+ ++ L A E Sbjct: 1481 SLFPQHGDSPETLLDNADIALYRAKDEGRGCFAYFSEEFTIIARERIALETRLRRATEQR 1540 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 EL + Y I + I+G EAL++W P G IS + F+ IAEE +I I ++L Sbjct: 1541 ELCVYYQAQIDIDSGLIIGAEALVRWHDPAAGLISPANFIPIAEETGLIVEIGAWVLRET 1600 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 W D P + + +N++ +++ + ++S+T + ++L +ES +M Sbjct: 1601 CLQGRRWIDAGL-PSLTLAVNVSPHQFRRSDISALVAEVLSETGFPAELLELELTESGLM 1659 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRI 896 N E++ +L LR G+ L +DDFGT S L+YL P D +K + S + + + Sbjct: 1660 ENEEKAVEVLNNLRAQGVRLAIDDFGTGYSSLAYLKRFPLDVLKIDKSFIDDIPSVQDDM 1719 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +I+ M + ++A+ + + L GCD Q + PL +LL+++ Sbjct: 1720 EITATIVAMGHILGFKVLAEGVETLEQLAFLREKGCDTYQGYIKSKPLPAEDFAQLLRDQ 1779 Score = 88.5 bits (218), Expect = 6e-15, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 14/172 (8%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 +I T++ + ++ + + LA +G + D+ +R ++P + ILG+ Sbjct: 336 VIALTLLASYRSLKRKNKIAARNEKLLRLAHETAGIGYYVTDLATERWESSPLLDQILGI 395 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-RAADNQFHWMIIRI 499 + I NW IH + + R R E+ + RA+DN+ W+I Sbjct: 396 DAH-FERTIPNWGALIHPEHYQRVLDHYQEIL-HSRERFSMEYEIIRASDNETRWVIAHG 453 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLE--GILCNAFQDNLTGIPNRQSFLD 549 + G+ + +G DITE+K + +AF R F D Sbjct: 454 DIEFDKTGNPAQLVGTVQDITERKHAEAALRESEDAF---------RHLFED 496 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 15/159 (9%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 I L++ + + E L + S + + G Sbjct: 772 RITEALSSLISIKSLRESEEHFRLLIQKSPVAIGIINKQNGIDLLNDRFIRTFGYTLND- 830 Query: 446 HGPIRNWLPYIHINDR------DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + W P + ++ + + ++ + + EFRV + +I Sbjct: 831 APNLEAWWPLAYPDEHYRDQVKETWTGFMEKAIIEEKDLEPMEFRVTCKNGTVRDIIFYN 890 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + G+ R + +DITE+K + + D L Sbjct: 891 AIV----GE--RILVFFDDITERKAVENKLR--SRTDEL 921 Score = 44.9 bits (105), Expect = 0.059, Method: Composition-based stats. Identities = 23/191 (12%), Positives = 67/191 (35%), Gaps = 19/191 (9%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-AS 442 +Q + + + + S D + + T LG + Sbjct: 467 VGTVQDITERKHAEAALRESEDAFRHLFEDSKDPILLI-KEGRFIDCNAAALTQLGYHSR 525 Query: 443 GSMHG-PIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + P + + + ++ + + G ++E+ AD+ + + Sbjct: 526 SELINYKPDEISPDYQPDGQSSEEKAAEMIAAALQ--VGYHRFEWLHVRADDSPLPVEVS 583 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + PM+ +G+++ ++ DITE+K++ + + N ++R++ I + Sbjct: 584 LTPMT-VHGELITHVC-WRDITERKQTEQQLTRQLRY------LN---IMERISRINATA 632 Query: 559 ATDDNLRPTVM 569 + + + V+ Sbjct: 633 ESLEAMLDGVL 643 >gi|85712929|ref|ZP_01043969.1| Signaling protein with a ligand-binding sensor domain, PAS, GGDEF andEAL domains [Idiomarina baltica OS145] gi|85693235|gb|EAQ31193.1| Signaling protein with a ligand-binding sensor domain, PAS, GGDEF andEAL domains [Idiomarina baltica OS145] Length = 1135 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 263/566 (46%), Gaps = 19/566 (3%) Query: 400 IFSDGER---QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 I + ER + ++ D + +D + I G + G Y Sbjct: 579 IINSDERIDMLATSLTNISDGICIFDRFFRKREINTAYERITGYQREQVIGQAFALPHY- 637 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DRD I + + R G E AD + + + + N +G+I + Sbjct: 638 ---DRDFTDQIKHTVL--REGSWSGEVTDFNADGAELLLELTLDAVRNDSGEIKLIVASF 692 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE++ + + + D+LTG+PNR F + + + +++ D+D + Sbjct: 693 SDITERRNTENELRRLSNTDSLTGLPNRSYF-----QVSHSNLVRKRVAHALLLFDLDDF 747 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG VGD++L + R+ EL + D L RL G+ FGI++ + I+ A Sbjct: 748 KRINDSLGHEVGDELLCRVADRLAELGRRQDTLYRLGGDEFGILIEDNTDINVISTIAQQ 807 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + IA + EI + +SIG + TS E+L+ A+ AMYHAK RGGN + F Sbjct: 808 VNTEIAKAYRIKGHEIALGSSIGIVLYPHDAHTSQELLQKADTAMYHAKQRGGNCYQFFN 867 Query: 697 VSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 S + + + + A+ ++ + Y P + + I G+EAL + IS Sbjct: 868 ASMNENAIQRLVLESQVRHAIRTHQVEVYYQPKMEIATGHISGIEALARIRDEYGQFISP 927 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++F+ + EE +I ++ +L RD+ P + IN++++ + L + Sbjct: 928 AQFIPLCEETGLIIPLSEQVLRTACRDMRQLLTLQGAPR-SVAINLSARQFTQSSLALFI 986 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ + P I+ +E +VM +PER+ +L L +G+ L LDDFGT S L+YL Sbjct: 987 EQVLQEEEMHPRHIEFEITEGMVMSDPERAIAMLENLADMGVQLALDDFGTGYSSLAYLK 1046 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P T+K + + E+ ++ SII MA N+ ++A+ + + + L ++ C Sbjct: 1047 RFPMHTLKIDKEFVDDITFDERDRKMVESIIGMAHNLGLKVVAEGVEEKAQLDILEQLQC 1106 Query: 933 DYIQDSHVASPLGFNSILKLLKERFP 958 +YIQ + A P+ ++++ + ++ P Sbjct: 1107 EYIQGFYFAKPMSAEALIEFITKQQP 1132 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 5/179 (2%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 N + +++++ L + + + + G+ VW W+ Sbjct: 419 ANGFTAMHYLSMIIVLLALAILFIFLLLKRKARAYHKLTEAHTSLHQLLNGTQQQVWHWN 478 Query: 423 IVRDRVTTTPDIATILGLASGSMH-GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 +V V + + G ++ +H +D L+ Q Sbjct: 479 LVNSEVERVHIWSHCPHFPLDGVRFGLGQSDQSNVHPDDIGELTAALEQVKSGHISHYQC 538 Query: 482 EFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 +R++ Q+ W++ R ++ +G ++ G +DI++ S E I A +LT Sbjct: 539 TYRIKNGQ-QWLWVLERGELVAAETSGKPIKVQGTLSDISDIINSDERIDMLAT--SLT 594 >gi|120597360|ref|YP_961934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. W3-18-1] gi|120557453|gb|ABM23380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. W3-18-1] Length = 1487 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 137/564 (24%), Positives = 260/564 (46%), Gaps = 12/564 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + + A + + V + + I+G + G + + Sbjct: 925 QRLLEDEVKLLAQAFENTSEGVLILESNENIRVANHAAQQIIGSGDTDLVGLSFSQFLRM 984 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D + + E + + + + M +N Y+ + Sbjct: 985 N----DGLSYEIKQLLDTET-SWTGERELVNQRGHLCPVWLNVSMMQTANIKEHYYVVVF 1039 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K++ + A D LTG+PNR F +RL + ++ + ++ +D+D++ Sbjct: 1040 SDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLLQSIQVAQQTGE-KLALLFLDLDRF 1098 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV + R+ + +L R G+ F I+L + +N +I A Sbjct: 1099 KHVNDSYGHSMGDALLVEASNRLQSCISSEHLLCRFGGDEFVILLRNASNIDEINHIAER 1158 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + I P L RE ++ SIG + W I +KNA+LAMYHAK G + + + Sbjct: 1159 LLAQIVAPFKLFGREFYISTSIGISIWPDDAIQPEAFIKNADLAMYHAKEEGRGNFKYYS 1218 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNIS 753 ++ + ++ DL A+E E L Y P I ++ + +G+EALI+W HP+ G I Sbjct: 1219 SERNAQALYHLRLEADLRKAIEREEFELYYQPQIDIVQGDKFIGMEALIRWRHPQEGFIR 1278 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AE +I I+ ++L + W P + +NI++ + EG Sbjct: 1279 PDIFIKVAESCGLIVDIDRWVLRQACLHGAKWIKAY-SEPFKLSVNISAVHFRQADFIEG 1337 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q ++ +T PS + L +E V+M + ++ L +L+ +GI + +DDFGT S L+YL Sbjct: 1338 IQQILLETQMPPSSLGLEITEGVLMKELQVAKSHLNQLKSLGIEVAIDDFGTGYSSLAYL 1397 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + +T+K + S + AI+ SII +A+N++ ++A+ I ++++ G Sbjct: 1398 RHFDVNTLKIDRSFLIDIATNTADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1457 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C IQ + A P+ + Sbjct: 1458 CYVIQGYYFAKPMSVRDFELYIAA 1481 Score = 94.6 bits (234), Expect = 8e-17, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + V + +Q + +R ++ GS +W+W + ++LG Sbjct: 786 FAWYRQRQVNSFMLMNQALTESDDRLRQSLRGSDSDLWEWHKDTQKFHLDNR-GSVLGKH 844 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + + + IH DRD +S + R + E+R + + + W+ +R RP Sbjct: 845 TNEIIVSLEDLP--IHQLDRDKVLAQWNSMLVGEVDRFEAEYRYQHREGHWGWLRVRGRP 902 Query: 502 MSNSNG--DILRYIGIANDITEQKKSLEGILCNA 533 +S + +I R GI +DIT Q+ + + A Sbjct: 903 ISRNKHTQEIERAAGIYSDITVQRLLEDEVKLLA 936 >gi|90426096|ref|YP_534466.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gi|90108110|gb|ABD90147.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 915 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 140/624 (22%), Positives = 271/624 (43%), Gaps = 40/624 (6%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 +L+ + + G ++I ++ + Q + + D Sbjct: 296 LLMVVTTTVSSSLADWYRQTRFLIIVAAGSTMIIAAILFLIIRQLTRQHRATQRQLTRDK 355 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 +R S A+ + +D V + GL++ + Sbjct: 356 QRLSTAINNMTQGLLLFDSSARLVVCNQRYMEMYGLSAEVVKPGC--------------- 400 Query: 465 RTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL----------RY 512 L + R+ G + + AD H + +G + + Sbjct: 401 --SLRQILAERKAAGSFEGDIDAYCADTLSHVAARNVTVAVTPDGRSIQIATEPAPEGGW 458 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + DIT++++S E I A D LT +PNR SF +R+ + A ++ ID Sbjct: 459 VATHEDITDRRRSEERIAYLAHYDELTSLPNRTSFRERIEDEFERVAR--GGTLALLYID 516 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 ID++K IND LG VGD +L + R+ L+ D +ARL G+ F I+ + + ++ + Sbjct: 517 IDEFKAINDSLGHPVGDALLKIVAARLKACLRETDFVARLGGDEFAILQTAPRDVQEVTE 576 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 + ++I P L +I+ ASIG A + +++KNA+LAMY AK G Sbjct: 577 LVARLFETIRAPCECLGHQISTDASIGIALAPPHGTDTDQLIKNADLAMYQAKADGRRTC 636 Query: 693 ESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F +R ++ +L A+ + + Y PI+ L + +++G EAL++W HP+ G Sbjct: 637 RFFEPRMEASAKERRTLELELRKAIADCAFEIYYQPIVELRNGDVIGCEALLRWRHPQRG 696 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 IS ++F+ +AE +I + ++L + +W + + + +N++ L Sbjct: 697 MISPAKFIPVAEATGLINELGEWVLRTACAEAANWPAE-----MSVAVNVSPVQFKSRTL 751 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + A ++ + SR++L +E+V++ + E + +L L+ +G+ + LDDFGT S L Sbjct: 752 PLKVAAALAASGLPASRLELEITEAVLIDDDETALSVLHELKTLGVRIALDDFGTGYSSL 811 Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL PFD +K + + G + AI+++++ +A T A+ + L Sbjct: 812 SYLQRFPFDKIKIDRCFIDGIARPDGASAIVQAVVNIATARHMTTTAEGVETAEQRDLLR 871 Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952 +GC ++Q + + +++ +L Sbjct: 872 GLGCTHMQGYLFSPAIAPDTVRQL 895 >gi|21492856|ref|NP_659931.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|190894094|ref|YP_001984388.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|21467281|gb|AAM54944.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|190699755|gb|ACE93838.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|327192457|gb|EGE59412.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 852 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 137/577 (23%), Positives = 257/577 (44%), Gaps = 8/577 (1%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + V I S + + D+VW ++ + + Sbjct: 263 AATTLLAFSRDVTERRQAEDAINSVRTQLLSVLQTIPDMVWVKNVDGVHLLCNHAFERLT 322 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMII 497 G + + G L +R + D G L E V + + Q + Sbjct: 323 GKSEAEVVGKTDLELFG---AERAHISGKSDEATIEAGGILIDENWVVSPENGQSILLET 379 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 R + + G++ +G++ D+TE S E I AF D +T +PNR F +RL ++ Sbjct: 380 RKLAVLGAGGEVTGVLGVSRDVTELNASREKIRQMAFYDPVTSLPNRLLFNERLQKVVSD 439 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 ++ R VM+IDID +K +ND +G VGD +L + R+ + ++ D +ARL G+ F Sbjct: 440 AS-SQRRRTGVMLIDIDHFKVVNDTMGHPVGDQLLCQVATRLKKSVRDLDTVARLGGDEF 498 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L + + A ++ + L +E+ V+ S+G A ++++K A Sbjct: 499 AILLPEIQTTDDLDWVACSILERFKESFLLDGKEVYVSCSVGIAISPDDSTDVNDLVKYA 558 Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY AK G N + +R+ ++ +L A+E EL L Y P + L + Sbjct: 559 DSAMYLAKRSGRNSFRFYSKDLTVGVEERMQLESELRRAIEREELELHYQPKVLLDSGVM 618 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G EAL++W HP+ G I F+ +AE+ +I + ++L + + Sbjct: 619 IGSEALLRWPHPEMGMIPPVRFIPVAEDTGLIVELGRWVLREACKTAKELNADCHHLH-K 677 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 I +N++ K + L + A++ +T I++ +ES+++ + L +LR++G Sbjct: 678 IAVNLSGKQFQCSRLVNEIAAILGETGCRAEWIEIEITESLLLDRKGETLQTLLKLRQMG 737 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA 915 S+ +DDFGT S L+YL P DT+K + S + S ++ ++++I+ +A+ + ++A Sbjct: 738 FSIAIDDFGTGYSALNYLARFPIDTLKIDRSFINSSDKRNEELVKAILSIAQCLGQDVVA 797 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + L GC Q + L ++ L Sbjct: 798 EGVETAEQAAFLAANGCGSAQGFFYSKALPKMELIAL 834 Score = 54.2 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 4/146 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLAS 442 F ++ +D A++G ++ D+ V +LG + Sbjct: 14 FQKRRNRRRDEALHHDTSADRGALLEALIGVLPLPIFFKDLHGRYVGCNKVFEDLLGRSR 73 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G L +I + + R G E ++ A+ ++ Sbjct: 74 DEIIGNTDFDLSSTQ---LAEIYSIEEKGLLERGGAQVSERKIALANGAILDVVCNKAVF 130 Query: 503 SNSNGDILRYIGIANDITEQKKSLEG 528 + + IG+ DITE K + + Sbjct: 131 RGHDDEPAGLIGVIIDITEHKLAEQE 156 Score = 51.9 bits (123), Expect = 5e-04, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 45/145 (31%), Gaps = 4/145 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 VI + Q + + E V D++++ D + +L Sbjct: 141 IGVIIDITEHKLAEQELKNALELAQGIVTAIPDVLFEVDEDGRYLQVWTRNPELLAQQRE 200 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + + + L + + V + + W + + Sbjct: 201 MLLGRTVD--QVLAPDQAAIAMEALRTASSEGVAYGRC-ISVSLPNGETRWFELSVARRP 257 Query: 504 NSN-GDILRYIGIANDITEQKKSLE 527 +++ + + D+TE++++ + Sbjct: 258 SADPDAATTLLAFSRDVTERRQAED 282 >gi|300117863|ref|ZP_07055630.1| sensory box/GGDEF family protein [Bacillus cereus SJ1] gi|298724727|gb|EFI65402.1| sensory box/GGDEF family protein [Bacillus cereus SJ1] Length = 735 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 146/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L R L E R + + ++++ I + P N +++ G Sbjct: 232 FIDPKDHDLLQKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHGVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTNVTELMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLEETELKSEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732 >gi|218887542|ref|YP_002436863.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758496|gb|ACL09395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 663 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 150/551 (27%), Positives = 266/551 (48%), Gaps = 24/551 (4%) Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W+ D V TP I G + S R +H D +R V Sbjct: 121 WE-DADGKVVFVTPACQRITGYSLESFRANARFIEGIMHPEDLPLWRKH-REMVASGAEM 178 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 ++ E RVR D + W+ R + ++ G D+T++K L + A+ D L Sbjct: 179 VEVEVRVRTQDGRERWLACTSRRLHDAEGTSQGVRFSGRDVTDRKIMLTQMKHQAWHDPL 238 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+PNR LDR+ L + + V +D+D++K +ND +G + GD VL + RR Sbjct: 239 TGLPNRALCLDRIDRSLHRARRGVDNVCAVAFLDLDRFKVVNDSMGNSAGDQVLREVARR 298 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + E + D ++RL + F ++L + + + S+ P+ + R+I ++AS+ Sbjct: 299 LAENTRTIDTVSRLGSDEFILLLDEVRSEEEALITVQRICTSLEPPLEVAGRQIRISASV 358 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVE 716 G + EML+NA +AM+H K GG+ + F+ S + + ++ DL A++ Sbjct: 359 GVVM-NRGGGNADEMLRNANIAMHHVKEHGGDGMAVFQPSMLEQAMNLMQLEIDLHRALD 417 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 N+E +LVY PI+ L D + G EAL++W+HP G + SEF+ ++E I + ++L Sbjct: 418 NNEFFLVYQPIMSLHDRRLTGFEALVRWNHPDRGIVGPSEFIPVSESTGQIHQVGHWVLA 477 Query: 777 RIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 R + +WR+Q M + + +N++++ L L E + A++ +T +KL +E+ Sbjct: 478 EACRALAAWREQQPSMRSVIMHVNLSARQLSQPGLVEQVAAVLRETGLPARCLKLEVTET 537 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 ++M NP+ + L+L RL++IG+ L +DDFGT S LSYL P DT+K + S + Sbjct: 538 MLMENPDYANLVLRRLKEIGVRLCIDDFGTGYSSLSYLQQFPIDTLKVDQSFVARMCREP 597 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYG--------EIDIKELTRMGCDYIQDSHVASPLG 945 I+++++ +A ++ E L+ + C+ Q + P+ Sbjct: 598 GHFKIVQAVVALAHSLGL--------DVVAEGVEEEEQRIMLSELSCEGGQGYLFSRPVP 649 Query: 946 FNSILKLLKER 956 + L +R Sbjct: 650 GEDVPGLFVDR 660 >gi|83746060|ref|ZP_00943115.1| Sensor protein [Ralstonia solanacearum UW551] gi|207742445|ref|YP_002258837.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] gi|83727243|gb|EAP74366.1| Sensor protein [Ralstonia solanacearum UW551] gi|206593835|emb|CAQ60762.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] Length = 903 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 142/575 (24%), Positives = 261/575 (45%), Gaps = 12/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447 + + + + ER LAV + + + P IL G S Sbjct: 325 AVQKAHIVRELQDSEERYRLAVDNLTEGILVQSADGIILACNPSARRILRAGDTSPVGES 384 Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + + + + + R L + D W+ + P+ Sbjct: 385 HLTLMRRSLREDGSEIPVLERPTRVVLSTGRPLLGLTIGLELVDGDVVWVYENVLPIMRP 444 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + NDI + + + + A +D LTG+ NR FL R+ +LD +ATD Sbjct: 445 GDDTPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDGAATDGR- 503 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D +KK+ND G GD +L + +R+ ++ D LARL G+ F ++L Sbjct: 504 QVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQADTLARLGGDEFVVLLDHV 563 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + +IA P + E + ASIG A ++ +L+ A+ AMY+A Sbjct: 564 RSLDEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNA 623 Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F R +++ L A+ EL L Y PI+ + IVG EAL+ Sbjct: 624 KQNGRNQHRVFTERLSQRAQRRFQLEQHLRRALSAQELSLRYQPIVDAISMGIVGAEALL 683 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G++S +EF+ +AE+ +I AI ++LE+ R WR+ P FI +N++ Sbjct: 684 RWHSAELGDVSPAEFIPVAEDAGLITAIGEWVLEQACRQAAHWRNTCA-PDFFIAVNLSP 742 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + D L + ++++ +++ +E ++M + +L L +G+ +++DD Sbjct: 743 RQFGD-GLVPTLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P D +K + S ++G R +++ R+++ MA +++ T+ A+ + Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFISGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q +P+ + + L+ Sbjct: 862 LEQAEFLQAAGCDKLQGFLFGAPMSAAAYEERLRR 896 Score = 42.2 bits (98), Expect = 0.46, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 7/141 (4%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458 + +R V D ++ V +LG ++ + G + +IH Sbjct: 23 LPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSAHDIVGRELD--AFIHE 79 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + R + + + G E + D + + P+ G +A D Sbjct: 80 DSMQLARQRREWMIEHGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAVQVVARD 137 Query: 519 ITEQKKSLEG-ILCNAFQDNL 538 I ++K++ + A L Sbjct: 138 IRQRKQAEQALRESEANYRAL 158 >gi|307720880|ref|YP_003892020.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas autotrophica DSM 16294] gi|306978973|gb|ADN09008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas autotrophica DSM 16294] Length = 762 Score = 519 bits (1337), Expect = e-144, Method: Composition-based stats. Identities = 153/734 (20%), Positives = 311/734 (42%), Gaps = 31/734 (4%) Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA---KVGYITFSGIACIAILFC 298 + + I+ S L F + N + I + G+ +ILF Sbjct: 33 IFYNHVNNKELLVWYFLISSVSLLRFFSYKLYKKNNHKFSIQRWKQIFYGGLIVSSILFG 92 Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 ++ + V S I++ + RAV L + + + + + + Sbjct: 93 LTPFLFFVQQSPLHQAALIIIISGLSAGGVSSLSSLIRAVQLFL---VFILTPLIIKLLM 149 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS------QGIFSDGERQSLAVL 412 L + I + L+L++ + ++ + R Sbjct: 150 QNTLLYNSIAFLVFLYLILMLYIAKEFYKNYLNILISKQMYKKTAAELSISENRFKTVFK 209 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + ++ +D + L + + + L + L + + Sbjct: 210 QAPLGIFMYDTNMIIHEVNQEFMNFLEASQEFLISLDLHTL----PD--QRIFPSLQAPL 263 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G + ++ + W+ + P+ + N +++ IGI DIT + ++ Sbjct: 264 DNIEGFYEGQYTTKFKQKNL-WISMNTSPLKDINNNVIGGIGIVTDITHRIQTQLQFEHQ 322 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D LT I NR L+++ + N+ V+ +D+D +K IND LG AVGD++L Sbjct: 323 AKHDTLTDIANRSLLLEKIEQEIIRYKRH-NIIFGVIFLDLDHFKNINDSLGHAVGDELL 381 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINL 647 + R+ ++++ D +AR+ G+ F I+L N ++ A + ++ + Sbjct: 382 IQTAHRLKDVIRVEDTIARIGGDEFVILLPDLANEMQFAATNAERIAEKIHNILSKSFKI 441 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 + + V+AS+G A + + ++LK A++AMY AK G N + ++ + Sbjct: 442 NDLTLNVSASLGIAFIGNGSQSPDDILKYADIAMYEAKKAGRNTTKFYQHKMDEWISRRM 501 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + L AV+N EL L Y PII +++G EAL++W+ PK+ ++ EF+ IAEE Sbjct: 502 AIENGLRDAVKNQELELHYQPIIDFATSKVIGAEALLRWNTPKFNDVYPDEFIPIAEESG 561 Query: 766 MIKAINLFMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I ++L+ + ++W+ + I +NI++ ++ + ++I KT Sbjct: 562 LILEIGKWVLQTALKQFVAWQKEFTGVIELQKIAVNISAHQFENSNFLHDVDSIIKKTNI 621 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 PS ++L ES ++ N + + +LR +G+S+++DDFGT S LSYL +PF T+K Sbjct: 622 KPSCLELELVESALVENLKTVSTRMQKLRDLGVSISIDDFGTGYSSLSYLKKLPFTTLKI 681 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + ++ +I+ +A+ ++A+ + + L C Y+Q + + Sbjct: 682 DKSFVMDIQNDVDDKELISAILMIAQTFNFEVVAEGVETQEQYLFLKEKKCTYLQGYYCS 741 Query: 942 SPLGFNSILKLLKE 955 PL ++ L++ Sbjct: 742 KPLPNEQFIQFLRK 755 >gi|302879091|ref|YP_003847655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581880|gb|ADL55891.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 907 Score = 519 bits (1337), Expect = e-144, Method: Composition-based stats. Identities = 147/588 (25%), Positives = 283/588 (48%), Gaps = 19/588 (3%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 G V +V++ ++ + + + + V +D +T Sbjct: 331 GNAVGVVMVFHDVSKRYA-----LLDELGAARAQFETLFEQLPEGVLLFDESLAVITHNR 385 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 + A +L AS ++ + + + +D++ + G +E R R + Sbjct: 386 EAANLLEYASDALLLLQVSDIEAM--DDQNAIAARKEKL--QLTGIDNFESRYRTRSGRL 441 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 + + ++ + NG I + + DITEQK++ I A+ D LTG+PNR+ DRL+ Sbjct: 442 MDVDVSVQVVQLPNGRIA-FQTLFRDITEQKQTSAQIEHLAYHDQLTGLPNRRLLKDRLS 500 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 + D + +M +D+D +K +ND LG GD +L + R+ ++ D LAR+ Sbjct: 501 QAVSSVVRRD-AKLALMYLDLDHFKDVNDSLGHGAGDVLLQIVAERLQGCVRADDTLARM 559 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F ++L N + +A A + ++ P+ + E+ +T S+G + + + Sbjct: 560 GGDEFVLLLNGVNGADDVASIAGKIIHELSQPMRIGNDELRITPSLGISMCPQDGRDADD 619 Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 +LK A++A+Y AK +G + +RV ++ L A+E +E L Y P + L Sbjct: 620 LLKYADVALYQAKQQGRATYRFYTQALHDQSVERVQLERLLRHALERNEFELYYQPQVDL 679 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 D I+G EALI+W+HP G +S + F+ IAE+ +I I +++++ W DQ Sbjct: 680 CDGRIIGCEALIRWNHPGMGQVSPARFIPIAEQSGLIIDIGNWVMKQACHQAKRWHDQGW 739 Query: 791 MPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + N++++ + + EL + ++ ++++ P+R+++ +ES+++ +P+ +L Sbjct: 740 D--IKVSFNVSARQFMRSGELMQSLRDALAESGVDPTRMEVELTESLLL-DPQGMGEILH 796 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAK 907 +R +GI L LDDFGT S LSYL P +K + S ++ + ++++II MA Sbjct: 797 EIRALGIQLALDDFGTGYSSLSYLRRFPISILKIDRSFVSAADNNADDAEMVKTIIGMAH 856 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 N+ ++IA+ I L GC+ Q H + P+ LL++ Sbjct: 857 NLRMSLIAEGIETNAQRDMLETQGCEVGQGYHYSCPVPATEFSLLLQQ 904 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 31/260 (11%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 + + + L G + +++ + I R GD V Sbjct: 183 QGMVAGVLGRHGLKLGA--LAMVLPLLSLWFFWQVYRALGFIVQSDARIRAIYEAIGDAV 240 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFV-GYRR 476 D + +LG G + + ++ + + +S + Sbjct: 241 LVGDRQGRVESINATAQRLLGWTEAEARGKLISDVFELYDVHHQQRVESPAESVLRDGIP 300 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + +R D + P+ + +G+ + + + +D++++ A D Sbjct: 301 IPMSNGMLLRRRDGSQLAVEDSAAPVRDEHGNAVGVVMVFHDVSKRY---------ALLD 351 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID-----IDKYKKINDVLGIAVGDDV 591 L G R F + V++ D I ++ ++L A + Sbjct: 352 EL-GAA-RAQFETLFEQL----------PEGVLLFDESLAVITHNREAANLLEYASDALL 399 Query: 592 LVSLTRRIGELLKFPDILAR 611 L+ ++ I + I AR Sbjct: 400 LLQVSD-IEAMDDQNAIAAR 418 >gi|254562232|ref|YP_003069327.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254269510|emb|CAX25476.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with GAF and two PAS/PAC sensor domains [Methylobacterium extorquens DM4] Length = 1003 Score = 519 bits (1337), Expect = e-144, Method: Composition-based stats. Identities = 147/579 (25%), Positives = 256/579 (44%), Gaps = 14/579 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A+ + S + V+ + V +A + G Sbjct: 431 HICTFTDLTASRQSEAALRSAEADYQSLFQNAVIGVYRARLDGGIVQANRALARLHGYGD 490 Query: 443 GSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + P + YI + F T L+ E R R A + W+ Sbjct: 491 AGLSLPEGGFSHDWYIEPGRHEAFLTCLEQ--KGHVEDFVSEVR-RHAGGERIWVSETAW 547 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + ++ G + + G D TE+K++ I A D LTG+PNR+ F + L +D + Sbjct: 548 VVRDAAGRPIWFEGTVADATERKRAQALIEHMARHDALTGLPNRRLFQETLAREIDGALR 607 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D V+ D+D++K +ND G GD +L + R+ L+ D++ARL G+ F II Sbjct: 608 DGG-SVVVLCCDLDRFKAVNDTFGHPAGDALLRVVAGRLRATLREGDVVARLGGDEFAII 666 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L S +IA FA + ++ P++L R TV SIG A W + + KNA++A Sbjct: 667 LPSRGKQRRIAAFARRLIQAAGRPVDLGGRATTVGVSIGVAVWPKHGDNADTLFKNADIA 726 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N + + ++ ++ ++ + L Y PI L D G Sbjct: 727 LYRAKDSGRNTFRFYESGMALAVVTRNLLEIEMRESIRSGGFALHYQPIFALADGAPQGF 786 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP G IS F+ +AEE +I + + L R+ SW + + + Sbjct: 787 EALLRWNHPLRGPISPGAFIPLAEESGLITQLGAWALHEACREAASWP-----GDLRVAV 841 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++ L + + ++ + R++L +ESV+M + + L RLR +G+ + Sbjct: 842 NVSAVQFRKTGLEQSVMRALAASGLPAGRLELEITESVLMQDSDAVIGSLHRLRAMGVRI 901 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S LSYL PFD +K + + + A++R+++ + + + I A+ Sbjct: 902 ALDDFGTGYSSLSYLCRFPFDKIKIDRAFIRDIDEPVAAAVVRAVVGLGERLGMAITAEG 961 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E + ++ R GC +Q + PL + L+ R Sbjct: 962 VETEEQLVQVRRKGCTEVQGFLLGRPLPAAEAMTLVAGR 1000 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 7/146 (4%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 H+L + + + ++A + W D + + IA I G + P Sbjct: 181 HLLEWEARQRALEAA---HAMAEQIAAFGHWRIDAATRTIAWSDGIARIFGRNAERATLP 237 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYR----RGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + + H +DR+ +D + R G ++ R+ D + + + + Sbjct: 238 LETHIGFYHPDDRERVWAAMDEALAGRSRTLGGGYEHRSRILRPDGEIRVVAVHGIGEHD 297 Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530 G ++ G+ D+T +S + + Sbjct: 298 EAGRLVSIFGVCLDVTGMARSEQRLR 323 >gi|42779774|ref|NP_977021.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] gi|42735691|gb|AAS39629.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] Length = 568 Score = 519 bits (1337), Expect = e-144, Method: Composition-based stats. Identities = 144/570 (25%), Positives = 257/570 (45%), Gaps = 28/570 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL++ + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ IAEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 360 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES + + + L LR +GI + LDDFGT S L Sbjct: 418 LSVRSILKRTGFPPNRLILEITESTAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957 MGCDY+Q + A PL + + L F Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKEKLTTDF 567 >gi|229176024|ref|ZP_04303519.1| Sensory box protein [Bacillus cereus MM3] gi|228607456|gb|EEK64783.1| Sensory box protein [Bacillus cereus MM3] Length = 677 Score = 519 bits (1337), Expect = e-144, Method: Composition-based stats. Identities = 147/566 (25%), Positives = 270/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 116 EGASALSKSEQRYKSLFEDHPDAVFSLNMDGIFQQSNTACESLF--TAYYCEVESYSLLH 173 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L R L E R + + ++++ + + P N +++ G Sbjct: 174 FIDSKDHDLLKKALQITKEGRPQTL--EVRTKEKEGYYYYLHVTLIPTF-INKEVVGMFG 230 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + T N VM +D+D Sbjct: 231 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSVN-DIAVMFLDLD 289 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L + A A Sbjct: 290 RFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIA 349 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 350 EQILTVLNKPFFIKDEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFIF 409 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F +++ ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 410 FSKEISIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 469 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ L Sbjct: 470 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSQLKVGVNLSVVQFNHANLIP 528 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 529 TISKVLEETELKSEALDIEITESIAINQNQSVISKLEQLQNLGIQISIDDFGTGYSSLAY 588 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 589 LTKYPINTLKIAREFICGITNSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 648 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + LL ++ Sbjct: 649 NCDHIQGFLISKPVSSKDVWMLLHKK 674 >gi|309779464|ref|ZP_07674225.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] gi|308921705|gb|EFP67341.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] Length = 624 Score = 519 bits (1337), Expect = e-144, Method: Composition-based stats. Identities = 146/574 (25%), Positives = 262/574 (45%), Gaps = 37/574 (6%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI---------RNWLPYIHIND 460 V + + R P A +LGL ++ G + + IH D Sbjct: 47 MVNALTEGILVCGADRRVTYANPSAARLLGLPVDALVGRLLPTVVTSAVDEFDASIHEAD 106 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD------------ 508 + + + +L F + D + W+ P+ ++G Sbjct: 107 WPD-----QDVIAEGQPQLNQIFGMHCVDGRTVWVSSNWTPLF-ADGSHSMTASARASEA 160 Query: 509 ---ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + DIT+ +++ + I A D LTG+ NR + DRL L L+ + + R Sbjct: 161 SATPYSVLVSLVDITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRNQS-R 219 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 +VM +D+D++K +ND LG GD +L + R+ + D +ARL G+ F ++L + + Sbjct: 220 VSVMFLDLDRFKNVNDTLGHQFGDMLLREVAARLQACAREADTVARLGGDEFVVMLEALD 279 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A + +I+ P ++ +E+ + SIG A + +L+ A+ AMY AK Sbjct: 280 GLGT-RRVAERILSAISAPFHIEGQELYLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAK 338 Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 RG N+ ++F S R I+ L A + +E Y Y P + + IV +EALI+ Sbjct: 339 ERGRNNFQTFTSDLDDRVSRRFRIESGLRRASDRNEFYADYQPRVDVRSGRIVSVEALIR 398 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+ +G++ +F+ AEE +I I+ ++L + WR +P + + IN++ + Sbjct: 399 WNSADFGHMMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPDLRMSINLSGQ 457 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 +L ++ + + + ++L +E +++ + LL LR +G+SL LDDF Sbjct: 458 AFSSGQLSGMVRGALLTSGLPGNAVELEMTEGILIRDDPSLHALLTELRAMGVSLALDDF 517 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL P DT+K + S + +R AI R+II MA+ + +A+ + Sbjct: 518 GTGYSSLSYLHRFPIDTLKIDRSFVQDLPHVVERAAITRAIIMMAQAMGMKTVAEGVETL 577 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ L +GCD Q + PL ++ L++E Sbjct: 578 GQLEFLREVGCDEFQGYLLTRPLEPAAVQDLVRE 611 >gi|152984254|ref|YP_001348582.1| sensory box-containing diguanylate cyclase [Pseudomonas aeruginosa PA7] gi|150959412|gb|ABR81437.1| sensory box-containing diguanylate cyclase [Pseudomonas aeruginosa PA7] Length = 858 Score = 519 bits (1337), Expect = e-144, Method: Composition-based stats. Identities = 140/623 (22%), Positives = 262/623 (42%), Gaps = 17/623 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 AW+ L L ++ L+ L +L V + +Q + Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVVAAGLLFWLSRSALLNAHAVDRQQKVLKRSNQALQ 299 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ER + D +W+ D + + G + G + L +D Sbjct: 300 ASEERFKSIAEAASDWIWEVDARFVFTYLSTRFREVTGYQPAAWIGRRLDELLG---SDT 356 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 N L+ R Q + + N GD Y G DIT+ Sbjct: 357 VNIVKWLEGLPDVGTPS-SLVCSFRDELGQARIGKLTATAIRNGAGD--GYRGTVADITD 413 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + ++ I + D LTG+PNR L L + V+++D+D++K IND Sbjct: 414 EVEAHAKIQHLSQHDALTGLPNRNKLFGFLERQL--AEKAGKSPLAVLMLDLDRFKPIND 471 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD VL ++ R+ + D++ARL G+ F ++ + + L++ F I + + I Sbjct: 472 QYGHPAGDAVLHAIAERLRASTRDLDMVARLGGDEFVVVSVHVTSRLEVEKFCIRLIEVI 531 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699 I E+ V ASIG A + +L+ A++AMY AK G N + + Sbjct: 532 NREILHDEQVFHVGASIGVALASEHGDDPRALLRCADVAMYEAKAAGRNTWRFYSEAMDF 591 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 +++ + +L A++ E L Y P R + I EALI+W HP+ G I EF+ Sbjct: 592 HLAEKKQREAELRAALQRGEFELYYQPRYRTEEGSIASAEALIRWHHPRRGMIGPDEFIG 651 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++L + SW + + + +N++ + ++ ++ + Sbjct: 652 LAEESDLIVQIGNWVLRQACSSAASWPGE-----VMVSVNVSPAQFISGDIVWQVREALR 706 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 R++L +E+V++ + + + + L+++G+ L +DDFGT S L YL PFD Sbjct: 707 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 ++K + + + + +I+++II + + + A+ + E ++ L C +Q Sbjct: 767 SIKIDKRFIANMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMRILRDEKCHELQG 826 Query: 938 SHVASPLGFNSILKLLKERFPLV 960 ++ P+ + LL+ L Sbjct: 827 FLLSRPVDGQRLQALLRSETALA 849 >gi|256823757|ref|YP_003147720.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256797296|gb|ACV27952.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Kangiella koreensis DSM 16069] Length = 810 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 143/583 (24%), Positives = 260/583 (44%), Gaps = 14/583 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 +I I + Q + + V S D + +D + +P + + G Sbjct: 227 AIIEIGSIHQIQKDFKTEQALRRKDKYYRTLVENSYDCILMYDRNMNVTYISPSVTRVTG 286 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G I DR+ L E R+ D W+ R+ Sbjct: 287 YTEEDLIGKTLEMF--IFEEDREEAEANLRYVAENPGALSVVERRINHKDGHILWIESRL 344 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + DI + ITE+K++ + I A D LT +PNR RL L S Sbjct: 345 VNHLG-DPDIQGVTVNFHVITERKQAEQKIHNLANYDPLTQLPNRYLLRKRLLKGLADSV 403 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 +++ + +M ID+D++K+IND LG +VGD +L ++ + I + L+ D LAR+ G+ F I Sbjct: 404 KNES-KLALMYIDLDRFKEINDTLGHSVGDALLQTVAKTIHKCLRSSDTLARVGGDEFTI 462 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L E + + A + + P + ASIG + + + ++ + A++ Sbjct: 463 VLP-ETSEKEARYIAERILQQFRTPFKADSHTVQTGASIGISIFPDHSKKAEDLFRFADI 521 Query: 680 AMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 AMY AK R + R S + R +++ L A+ N L L Y P + + I + Sbjct: 522 AMYSAKKERNQYQLYELRHSERENRRRSVEKKLKTAIANDHLRLYYQPRVDIKSGAIKSV 581 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL +W P G+IS S F+ IAEE ++ ++ + + + ++SWR+ + + Sbjct: 582 EALCRWYDPDHGDISPSVFIPIAEESTLVHELSQQVTDLACKQLVSWRNMGIDT--TVAL 639 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ KDL + L + S +++ +ES M + + +L + + +GI L Sbjct: 640 NLSIKDLRNFNLLNQFADTMRTYDIPGSALEVEITESAAMTDVVNTVKVLNQFKDLGIKL 699 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI------AILRSIIPMAKNIETT 912 ++DDFG S L+YL +P D +K + ++ + ++ I+RSII +A++++ Sbjct: 700 SIDDFGKGYSSLAYLSQLPVDNLKIDMYFVSQLSSQKQDRMINVNIIRSIISLAQSLDLH 759 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + + L +GCD Q P+ +I LL+E Sbjct: 760 TVGEGVETIQQMSILQSLGCDMGQGMLFCRPMSATAITDLLRE 802 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 11/114 (9%) Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQF 492 + +LG +H +D + + + +FRV+ D ++ Sbjct: 150 FSNLLGYTQEEFEAMPEGVYSTVHPDDIPVVQEQEQRLSASDDKDVIPADFRVKKKDGEW 209 Query: 493 HWMIIRIRPM-SNSNGDILRYIGIANDI-----TE----QKKSLEGILCNAFQD 536 W+ + + +G+ + IG + I TE +K L D Sbjct: 210 IWIQVHSTIYSRDEDGNAIIEIGSIHQIQKDFKTEQALRRKDKYYRTLVENSYD 263 >gi|65317327|ref|ZP_00390286.1| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Bacillus anthracis str. A2012] Length = 735 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L + E R + + ++++ I + P N +++ G Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG +GD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLXETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732 >gi|205372224|ref|ZP_03225039.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus coahuilensis m4-4] Length = 676 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 145/609 (23%), Positives = 285/609 (46%), Gaps = 22/609 (3%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD----GER---QSLAVLG 413 ++ +G ++ + + F ++ + + + ER Sbjct: 74 QVAFSFYTENKIGMILPFFVQLCFMLLSWFIPDILSEETLQKQYDQLKEREIWYHSLFEN 133 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 + V +D + T P I + G + ++ PY+H D + Sbjct: 134 NPVAVITFDHRGNIKHTNPKIFELTGYQEDYVVEH--SFKPYVHHKDHPIIYKEFKKALV 191 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 +E R+ D + +I + P+ N ++ + DIT K++ + I A Sbjct: 192 GVGS--NFELRLIHQDGRILQTMIVMVPVLIEN-KVVGVHCLVTDITTSKEAEKKIHHMA 248 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 + D+LTG+PNR+ F I ++ ++++D++++K +ND LG A GD +L+ Sbjct: 249 YHDDLTGLPNRRYF----EQITAEIIKRQPMKMAILLLDLNRFKVVNDTLGHAAGDQLLI 304 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + RRI + + D +AR+SG+ F ++L + + A + KS+ PI + + EI Sbjct: 305 EIARRIDDKIGVQDHVARMSGDEFILLLPTIRGKADVFHIANHIHKSLEQPILINDHEII 364 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711 + SIG A + + +LK A++AMY AK +G + S + + ++ED+ Sbjct: 365 TSTSIGVAMYPDHGEDLTTLLKTADVAMYTAKKKGAAQTFFYSNSLHAKEINPIQLEEDI 424 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+++ + + Y P ++ ++G+EAL++W H G IS F+ +AEE +I + Sbjct: 425 RSAIKHEDFLIYYQPKFSTINGRMIGVEALVRWKHRHKGIISPGHFIPLAEETGLIIPLG 484 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 +L ++ + W + I + +N++S+ D+ + ++ ++ +T +P +I+L Sbjct: 485 AHVLRKVCLKLKEW-ESRGHKDIIVSVNVSSRQFHDDHFLQTVRDILIETGVNPRQIELE 543 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +ES M R+ +L L ++GI++T+DDFG + S L+YL DT+K + S + Sbjct: 544 ITESTAMEQVYRAERILKELSELGITITIDDFGIEYSSLNYLKKFAVDTLKVDKSFIREL 603 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 E AI+R+II MA +++ ++A+ + E +K L GC Y+Q + + P+ Sbjct: 604 LTNESNQAIVRAIIVMATHLQLDLVAEGVETEEQLKWLQMNGCQYVQGYYFSRPIPCEEF 663 Query: 950 LK-LLKERF 957 K L Sbjct: 664 EKQFLTLHN 672 >gi|171060140|ref|YP_001792489.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170777585|gb|ACB35724.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 745 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 140/567 (24%), Positives = 263/567 (46%), Gaps = 17/567 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + R + + + + D + G ++ G + Sbjct: 181 ERKHAESELRLAATAFEAQEGMMITDAHGVIERVNKAFTQMTGYSAAEAIGQTA---RLL 237 Query: 457 HINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H D F + + R G Q E R + + + I + + + + RY+G Sbjct: 238 HSGRHDPAFYAAMWDSL-QRTGTWQGEVWNRRKCGEVYAEWLTITAVQDEHRTVTRYVGT 296 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI+++K E I AF D LTG+PNR+ DRL + +SA ++ ID+D Sbjct: 297 MLDISQRKAREEEIAQLAFYDPLTGLPNRRLLKDRLNQAMAISARSQR-EGALLFIDLDH 355 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL------ISENNSLK 629 +K IND G GD +L ++ +R+ ++ D +AR+ G+ F ++L ++ + Sbjct: 356 FKDINDTRGHDKGDLLLQNVAQRLSGCVREGDTVARIGGDEFVVMLGADLSTATDEAASH 415 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A + ++ +P + + +AS+G A + T E+LK A+ AMY AK G Sbjct: 416 ARSVAEKILAALNLPYLMSGEFVHCSASLGVALFNDHHDTVDELLKRADQAMYQAKAGGR 475 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + F + ++ + ++ +L LAV+ EL L Y P+I + ++G EAL++W HP Sbjct: 476 NTLRFFDTAVQQTMMLRAALEAELRLAVQRDELVLCYQPVIDHQN-RLLGAEALVRWKHP 534 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G +S +EF+ IAE+ +I+AI ++LE + +W + + +N+++++L + Sbjct: 535 RRGLVSPAEFIPIAEDRGLIQAIGRWVLETACTQLATWAADPATADLVLSVNVSARELHE 594 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + E + +++ T P+R+K+ +E+ V+ + + S + RL+ GI L LDDFGT Sbjct: 595 PQFVERVIEILACTGARPARLKIELTENAVLDHVDDSIAKMKRLKAHGIRLALDDFGTGH 654 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 LS L +P D +K + + + AI R+I + N+ +++A+ + Sbjct: 655 GSLSLLKRLPLDELKIDRTFVQDLLTDTHDAAIARTIAALGLNLGISVVAEGVETPAQRD 714 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKL 952 L GC Q P ++ ++ Sbjct: 715 LLIACGCRIFQGDLFGPPAALEALARM 741 Score = 46.5 bits (109), Expect = 0.024, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 18/162 (11%) Query: 386 VIQHVLATGYFSQGIFSDG-ERQSLAVLGSGD-----------IVWDWDIVRDRVTTTPD 433 + H L + +D R +A+ + D + D Sbjct: 38 AMAHELQVHRIELEMQNDELRRAQIALETARDRYIDLYDFAPVGYFTLDTNGLITEANLT 97 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQF 492 A +LG A + G R + YI DRD + R L GR+ E V+ A + Sbjct: 98 GADLLGEARAKLVG--RRFERYIAPVDRDRWHRHALSLSRRGEPGRI--ELLVQGAGGRS 153 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + ++ L I DI+E+K + + A Sbjct: 154 IHAQLDGLMARANHDAPLLRIA-LTDISERKHAESELRLAAT 194 >gi|264680504|ref|YP_003280414.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni CNB-2] gi|262211020|gb|ACY35118.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni CNB-2] Length = 900 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 142/566 (25%), Positives = 262/566 (46%), Gaps = 15/566 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 ER LA V + + V D ++ +LG + M G R + Sbjct: 327 ASREADERSRLASTVVDNTIEGVVVTDAHSRILSVNHAFTKLLGFSEAEMLGKTPRMFKS 386 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D+ + + S + G Q E R + + + + + ++N + Y+ Sbjct: 387 GRH--DKAFYDAMWASM--HATGHWQGEIWNRRKNGEVFPERMSLSAVKDANDKVTHYVC 442 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DI+ +K + + A +D LTG+PNR F L ++LS + + R V++ +ID Sbjct: 443 MFTDISAEKAREQQLEFLAHRDTLTGLPNRSQFTRMLGEAVELSQSTNR-RMAVLLFNID 501 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND G ++GD+VL ++ ++ L+ DI+ RL+G+ ++ S D A Sbjct: 502 RFKDVNDSYGHSIGDEVLRHVSVQMQGALRHGDIIGRLAGDEICVVAQSICGRDSAVDVA 561 Query: 635 IAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + + P + V+ S G + +T+ ++L+ A A+Y AK RG N Sbjct: 562 ERLMAAAGQPWTTPDGLSVVVSVSAGICLYPDHALTADDLLQGAHAAVYGAKARGSNAWC 621 Query: 694 SFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + +R+ ++ L A+E + L Y P I L +VG EAL++W P+ G Sbjct: 622 FFHENMTQAARERLALEARLRRALELGHMRLYYQPQIELATGRLVGAEALLRWLDPEEGL 681 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS + F+ +AE +I + L++L R WR P + I +N++ L ++ Sbjct: 682 ISPARFIPVAENSGVIGPLGLWVLGEACRQGQQWRAAGL-PDLAIAVNVSLHQFLLTDIA 740 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++K+ + S ++L +ES + PE + +L RLR++G+ L +DDFGT S L+ Sbjct: 741 GATAEALNKSGFPASLLELEITESALAEKPEEALAVLNRLRELGLRLAIDDFGTGYSSLA 800 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 +L P D +K + + + + I S+I + + ++A+ + + + L + Sbjct: 801 HLKRFPLDLLKIDQGFIRDIPHSADDMTISSSVIALGHAMGLKVLAEGVETQEQLSFLQQ 860 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 GCDY Q + PL +LL++ Sbjct: 861 KGCDYFQGYFCSRPLPAEDFTRLLEK 886 Score = 101 bits (253), Expect = 5e-19, Method: Composition-based stats. Identities = 40/328 (12%), Positives = 99/328 (30%), Gaps = 21/328 (6%) Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 V + ++ G L ++ + + + ++ + A+ Sbjct: 18 LYLCVGMLWLGAQAGVLG-YFDVSLNRQSLRWQIGLFIVWLLATALIALWFM--QRKARA 74 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIV-LYYTYFIIYHGMKGYERAVL-- 339 + ++ + + + L ++G + VL Sbjct: 75 DQRGRETAQELELVVRHAPAGMARVHVGGAEIVWANAKLAGWLGCSVESLRGQDFRVLVP 134 Query: 340 -------------LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 L+ F A T ++ + + V + + V Sbjct: 135 VNDQDDVALQLQRLLDGSTDYFQVLRQCVNADTGKVTPVLCTTSRVAASGVDGPVALVCV 194 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 +Q + + LA+ GSG+ VW+WD + R+ + ++ +L + Sbjct: 195 LQDLSEMVSARNAMMRSETMLRLALEGSGNGVWEWDALEQRLNFSTGMSALLRYQGQDL- 253 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 ++ +H D R + + L R+ D + W R + + + Sbjct: 254 AREFDFHQRLHPEDAAGARAQAEQALEQ-GSMLVLTARLLCFDGLYRWFRARGQAYKDES 312 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534 G ++R G+ +D T +++ E + Sbjct: 313 GRLIRISGLLSDQTASREADERSRLAST 340 >gi|326315979|ref|YP_004233651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372815|gb|ADX45084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1120 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 138/574 (24%), Positives = 259/574 (45%), Gaps = 13/574 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 V + + + R + V D+V+ D ++ P LG + Sbjct: 530 AVDVTEQKHLALELSQQRSRLASLVNAIPDVVFLKDASGRYLSCNPVFERYLGRRERDIV 589 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G + + R + + + + + E A D + P+ + + Sbjct: 590 GLGDE--ELMTPIEAARVRQLDERAMAAWQPVVYEETLTFAEDGYAGYFETIKTPIRDMH 647 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G + + ++ DIT++KK+ + I AF D LTG+PNR+ LDRL ++ L Sbjct: 648 GHVTGLLSVSRDITDRKKAEQQIELLAFFDALTGLPNRRLLLDRLQRAGAACQRNEKL-G 706 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ ID+D +K +ND LG +GD +LV + +R+ E ++ D +AR G+ F ++L + Sbjct: 707 ALLFIDLDNFKDLNDTLGHDMGDRLLVQVAQRLQECVRTSDTVARFGGDEFVVMLEGLDA 766 Query: 627 SLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 A + + P + ++ T SIG + + + E+LK A+LAM Sbjct: 767 DTAQAALQAEQVAEKLLAQLNRPFEMGAQQHYSTPSIGITLFGDQRRSVDELLKRADLAM 826 Query: 682 YHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F ++ DL + EL + PI+ + G E Sbjct: 827 YQAKAAGRNTQRFFDPDMQAQVTARSQLESDLRQGIARQELTVHLQPIVDGST-RLCGAE 885 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W HP G +S ++F+ +AEE +I + +L+ ++ W I +N Sbjct: 886 ALVRWRHPVKGLVSPADFIPLAEETGLILPLGRQVLQTACEQLVRWAAHPATAAFTIAVN 945 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++++ + + ++ T +P R+KL +ES+++G+ E + + +L+++G+ Sbjct: 946 VSARQFRQPDFVAEVLGTLAATGANPQRLKLELTESLLLGDVEDTIGRMAQLKRVGVGFA 1005 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S LSYL +P D VK + S + + AI+R+I+ +AK+++ ++A+ Sbjct: 1006 LDDFGTGYSSLSYLKRLPLDLVKIDQSFVRDVLTDPNDAAIVRTILALAKSLDLQVVAEG 1065 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + L GC+ Q P+ + + Sbjct: 1066 VETAGQLSFLKLHGCEGFQGYLFGRPVPMETFER 1099 Score = 72.3 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 48/344 (13%), Positives = 105/344 (30%), Gaps = 24/344 (6%) Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 +++G+A+ A+ +++ + +++ F + S LL++ Sbjct: 87 LVVGLATA-AVCNFFHGVLSHQP-------LGVGQDAQVAVSHYFSLWGHGVESVTLLLF 138 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 + A + L A V T G + + S A + Sbjct: 139 ALRASAAGPGMAWALVSALLSL----AIVWTATMDGPRDWLVASGHAPMRVAALVSGAFM 194 Query: 314 TLASIVLYYTY---FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 L++ + Y G R + + + + L Sbjct: 195 VLSACLFYGMRQRRTDAAVARHGRRRTMAAAAVAMATAQFLMALPPERFHWARMLAHALH 254 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW-----DWDIVR 425 +VG +L + V + R L D V + D R Sbjct: 255 VVGYALLFQAVFIAGVRMPYARLREAESRLRESESRLQLLGRNLPDSVLYQMVREPDGRR 314 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 V + ++G+++ + + I DR + D G + R+ Sbjct: 315 RFVHMGEALERLVGVSAADVMEDAQRLFDRIDPEDRA-AQAEADEVSYRTMGVGESVVRM 373 Query: 486 RAADNQFHWMIIRIRP--MSNSNGDILRYIGIANDITEQKKSLE 527 R D W+ + P + +G ++ + G+ D+TEQ+++ + Sbjct: 374 RRMDGAPRWIRLSSSPRLLKGGSGRVI-WDGVLTDVTEQREAQD 416 Score = 48.0 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 43/140 (30%), Gaps = 5/140 (3%) Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 +Q + E + + + + D + P A L + G + Sbjct: 411 QREAQDLSRAHEIQLASLLGRMPGGISRLDRDLRILYVNPSQAQWLRRTPQELEGRRAS- 469 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + + + + R + +++R + I P + +G ++ Sbjct: 470 -EVLSAELVQSLHPHMLQALQGR--PVVFDYRSPFRGEGPEFFHTTIIPETGPDGRVVAI 526 Query: 513 IGIANDITEQKKSLEGILCN 532 + A D+TEQK + Sbjct: 527 MVFAVDVTEQKHLALELSQQ 546 >gi|144898353|emb|CAM75217.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 961 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 136/564 (24%), Positives = 264/564 (46%), Gaps = 16/564 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILG---LASGSMHGPIRN 451 + R D ++ R+ + + G L + + + Sbjct: 398 ALDELAESEGRFRTIFDHVNDAIFIHRADTGRLLMVNQRMRDMYGMGDLPVDRIDVGMCS 457 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + L + + + ++ R D W+ + +R S+G R Sbjct: 458 --AGVSPYGAAEAQVWLRAAAAGQPQQF--DWHARRLDGSLFWVEVSMRLARFSDGQ-NR 512 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + DITE+K + + + A D LT +PNR DR+ + L+ + R +M + Sbjct: 513 LLVVVRDITERKNAQDRLEFMAHHDPLTELPNRLLLQDRVDRAIALAEREGR-RVALMFL 571 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND LG A GD +L + R+ + ++ D +ARL G+ F I+L + ++ + Sbjct: 572 DLDQFKTVNDSLGHAAGDRLLKDVAWRLRQCVRESDTIARLGGDEFVIVLNAVRDADGVV 631 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + A + KS+A PI + +E+T T S+G A + ++K A+ AMYHAK G + Sbjct: 632 EVAEKIHKSVAPPITIEGQEVTSTLSMGIAMFPEDGHDFDTLMKKADAAMYHAKESGRST 691 Query: 692 VESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F R+++ + ++ L A+E E L + P + L +VG EALI+W+HP+ Sbjct: 692 YRFFAARMNADAVAHLALRSGLHRALERGEFQLYFQPQVSLTGGAVVGAEALIRWNHPER 751 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S +EF+ +AE+ +I + ++L + R W+ + + +N+++ + Sbjct: 752 GLVSPAEFIPVAEDSGLIVPMGDWVLRQACRQAALWQA--GGHALTMAVNLSALQFRRGD 809 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L ++ + ++ +P ++L +ES+++ + E + RL +G+ L++DDFGT S Sbjct: 810 LERAVREALEESGLAPHSLELELTESIMIQDHEAVMDMTRRLGALGVQLSIDDFGTGYSS 869 Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 ++YL D +K + S + + AI ++II MA +++ +IA+ + ++ L Sbjct: 870 MAYLKRFAVDKLKIDQSFVRDVHTDTDNAAITQAIIQMAHSLKLEVIAEGVEVTEVVEFL 929 Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951 GCD Q P+ K Sbjct: 930 RDHGCDLAQGFLYGRPMTAQRFEK 953 >gi|330881640|gb|EGH15789.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. glycinea str. race 4] Length = 563 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 146/557 (26%), Positives = 266/557 (47%), Gaps = 14/557 (2%) Query: 401 FSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYI 456 +D +R LA + + V D V I G + + G + Sbjct: 1 QADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPSKFKSGR 60 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H + ++ + S + G+ E R + + IR + +G ++ + Sbjct: 61 H--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPRHFVAVF 116 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT K+S + + D LT +PNR DR++ L + +++ID+D + Sbjct: 117 SDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSARASKRG-CALLLIDLDHF 175 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG VGDDVL ++ R+ + LAR G+ F +++ + + ++ A A Sbjct: 176 KNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQAAALAQQ 235 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G + Sbjct: 236 VIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRECYALYT 295 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + RV + +L AVE +L + Y P L+ I G+EAL++W HP+ G +S Sbjct: 296 EELTAHAQQRVQLAYELRQAVELEQLRVFYQPAHDLVTRRIRGVEALVRWQHPERGMVSP 355 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ IAE+ +I I+ ++L+ + +W + +P F+ +N++S+ +L + Sbjct: 356 GEFIPIAEQSRLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHGDLDRRV 414 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + +T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT S L L Sbjct: 415 AQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYSSLLRLK 474 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P +K + + G + IAI+R++I +A ++ ++A+ I L GC Sbjct: 475 RMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAFLLGNGC 534 Query: 933 DYIQDSHVASPLGFNSI 949 Q A P+ +I Sbjct: 535 QLGQGYWFARPMVAQAI 551 >gi|90424616|ref|YP_532986.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gi|90106630|gb|ABD88667.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 823 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 145/563 (25%), Positives = 268/563 (47%), Gaps = 23/563 (4%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + L + +W +D ++ G S +R L I Sbjct: 265 SLKKREDSFRLLFDNNPMPMWVFDAKTTEFLSVNDAAVQHYGFERESF---LRMKLQDIW 321 Query: 458 INDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMS--NSNGDILRYIG 514 D L S + +R AD ++ R ++ +G ++ + Sbjct: 322 PEDEREV--HLRSVLQVGDTHYSGRNWRHLRADGSEIEVLTFGRQVAFEGRDGFLVAVV- 378 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 DITE++K+ I A D LT +PNR S+ + L L+LS N + V+ +D+D Sbjct: 379 ---DITERRKAEAKIAFMAHHDGLTNLPNRGSYQEHLHQALELSRRC-NSKVAVLCVDLD 434 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K +ND G GD +L + R+ + + D++ARL G+ F I+L + N+ + +DFA Sbjct: 435 LFKNVNDSFGHPTGDRLLQKVADRLRQQVGGNDLVARLGGDEFAIVLGAINSPNEASDFA 494 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + +++P ++ E+ + ASIG A E+L+NA++A+Y AK GG Sbjct: 495 AKLIEILSVPYDMDGPEVVIGASIGIALSPGDGDDGEELLRNADMALYRAKAEGGGTHHF 554 Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F R ++ DL A E L Y P++ L ++ I G E+L++W HP+ G I Sbjct: 555 FEREMDRQAQKRRDMEIDLRRAFTKGEFELYYQPLVNLAEDRITGFESLLRWRHPERGMI 614 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AE++ +I + ++L + + + W I + +N+++ L + Sbjct: 615 SPADFIPVAEDIGLIVGLGEWVLRQACAEAVKWPS-----DIKVAVNLSAVQFRCRSLVQ 669 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + A ++++ SP+R++L +ESV + + E + L +LR++G+ +++DDFGT S LSY Sbjct: 670 VVIAALAQSGLSPTRLELEITESVFLADTEANLATLHQLRELGVRISMDDFGTGYSSLSY 729 Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L PFD +K + S + +AI+R+I + +++ T A+ + + L Sbjct: 730 LRSFPFDKIKIDRSFVKDLADRPDCLAIVRAISGLGRSLNITTTAEGVETLDQLDWLRAE 789 Query: 931 GCDYIQDSHVASPLGFNSILKLL 953 GC+ +Q ++ I LL Sbjct: 790 GCNEVQGYLFSAARPSGEINDLL 812 >gi|288940694|ref|YP_003442934.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288896066|gb|ADC61902.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Allochromatium vinosum DSM 180] Length = 811 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 158/582 (27%), Positives = 268/582 (46%), Gaps = 27/582 (4%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 I V A +Q + D + LA S D ++ D V P + GLA Sbjct: 233 IGRVYAFRDITQRL-HDEQGLKLAARVFEASLDAIFVTDPEFRIVAVNPAGERMTGLAGA 291 Query: 444 SMHGP-----IRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 + G +R W + + R LD R G Q E AD ++ Sbjct: 292 ELVGQRLDRSLRLWANETLDPD----IRAALD-----RSGHWQGEIEQHHADGSTFPCLV 342 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + ++ G Y+G D++E ++ + I AF D LTG+PNR +RL ++L Sbjct: 343 SLMRVLDTEGLPFHYVGFVKDLSETVEARQRIEQLAFNDALTGLPNRLRLTERLEFSIEL 402 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + +N R V+ IDID++K IND LG GD VL+ + +RI + L+ D +ARL G+ F Sbjct: 403 ARR-ENTRFAVLFIDIDRFKHINDSLGHVFGDRVLIEVAQRIRQCLRHVDTIARLGGDEF 461 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L + A + +S+A P L + +++ SIG A + T +++KNA Sbjct: 462 VLLLHRVES-HGAELVARRLLESMAQPFELDGLKFSLSCSIGIALYPEDGETLDDLIKNA 520 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMYH K G ++ +RV I + A++ +L Y P I L+ + Sbjct: 521 DSAMYHVKEHGRGDCCFYQRQMNVGLLERVRIDHAMREALQQGHFWLAYQPQIDLVSGLV 580 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G EAL++W+ P G ++ F+ IAEE I A+ ++L R W+ Q + Sbjct: 581 IGAEALVRWNDPDLGELAPGRFIPIAEETGFIVALGGWVLREAIRQGAHWQAQGIR--LS 638 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+++ + + + +T P R++L +ES+++ N E + L L +G Sbjct: 639 LSVNVSATQFHQANFIDLLAQWLDETGLPPGRLELELTESILIQNVEETLRRLENLVALG 698 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 + L +DDFGT S L+YL P +K + S + E AI ++I +A ++ + Sbjct: 699 VRLAIDDFGTGYSSLAYLKRFPIHKLKIDRSFVCDIPHDESDTAIATAVIGLASVLKLRV 758 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 IA+ + +I + L GC Q A L + L + + Sbjct: 759 IAEGVETDIQRQFLLDAGCHEFQGYLCAPALEPAAFLARIAQ 800 Score = 47.6 bits (112), Expect = 0.010, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 7/118 (5%) Query: 416 DIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D VW D + + +LG S+ G + L D + Sbjct: 17 DAVWLVDGSDQRLLAVNRAAEELLGQGRASLVGRSMSELACT-PED----LFFWEDVAAG 71 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R L E +R D ++ R+ +S +G L Y+ ++ +E++ + Sbjct: 72 RGDTLLSETLLRRQDGTLVTVLRRVGRVSCPDGRCL-YLACFSNQSERRAVESELEKL 128 Score = 41.1 bits (95), Expect = 0.98, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 15/148 (10%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + S D + D+ + A + L + + Sbjct: 117 ERRAVESELEKLVAELRATLESSADGILVTDLDGAIRSFNQRFAELWRLPAALLTERNDA 176 Query: 452 WLPYIHI------NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 IH D + + L + +R ++ R+ + Sbjct: 177 ---GIHDWMVREVLDAEGYAARLQAIAQNPLLEASDLLTLRQG-----RVLERVTLPQYA 228 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNA 533 G + + DIT Q+ E L A Sbjct: 229 RGRPIGRVYAFRDIT-QRLHDEQGLKLA 255 >gi|229124804|ref|ZP_04253983.1| Sensory box/GGDEF [Bacillus cereus 95/8201] gi|228658679|gb|EEL14340.1| Sensory box/GGDEF [Bacillus cereus 95/8201] Length = 909 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 181/870 (20%), Positives = 355/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 T + +V L Y D FL +NL L + L S+L+++ Y Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392 ++ I + I IGL + + L + L+L + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ + I Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R C Y+Q + + PL +K L++ Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|71909600|ref|YP_287187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71849221|gb|AAZ48717.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 1665 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 128/568 (22%), Positives = 243/568 (42%), Gaps = 13/568 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 ERQ LA + + + D + + + G + G + L Sbjct: 967 ERLMAEERQQLAASVFDNAHEGIMITDPKGNILEVNATFTELTGYSRAEALGNTPDMLKS 1026 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H +D + + G + E R + + I + N +G + ++ I Sbjct: 1027 GH-HDPAFYEEMWQKIRD--DGYWRGEIWNRKKSGEIFVEQLTISSVRNRDGALSNFVAI 1083 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DIT K+ + + A D LT +PNR DR+ + V +D+D Sbjct: 1084 FSDITLLKQHQQRLEHLAHFDALTQLPNRMLLSDRMQLAKAQAERSGKT-LAVCYLDLDN 1142 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND G +VGD +L+ + +R+ ++ D +ARL G+ F +++ + ++ + Sbjct: 1143 FKPINDRYGHSVGDFLLIEVAQRLKTCVRAGDTVARLGGDEFVLLITNLDDLNECDHAMT 1202 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +++ P + + +TV+ASIG + S +L++A+ +MY AK G N F Sbjct: 1203 RVISALSQPFRVSAQFVTVSASIGVTLYPHDGSDSDTLLRHADQSMYAAKQEGRNRYHLF 1262 Query: 696 RVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + R R+ +E + + N E L Y P + + + +G EALI+W HP+ G + Sbjct: 1263 DPENDRRARLRREEIGQIREGLANGEFKLYYQPKVNMREGSFIGAEALIRWQHPERGLLL 1322 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ E + I ++++ + I +W + + INIA L Sbjct: 1323 PDSFLPALEGSELAIDIGDWVIQEALKQIDAWHRTQG-IDLSVSINIAGIHLQHPGFSRR 1381 Query: 814 MQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + L++ +P +I+L E+ + + + + L R +G++ LDDFGT S L+Y Sbjct: 1382 LGELLAAYPNVTPGQIELEVLETAALEDIQTTAELFAECRNLGVTFALDDFGTGYSSLTY 1441 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 +P D +K + S + +AI+ +I + + +IA+ + L + Sbjct: 1442 FRRLPADMLKIDQSFIRNMLDDTDDLAIVEGVIGLTHAFKRQVIAEGVETVEHGLVLLLL 1501 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958 GCD Q +A P+ + ++ P Sbjct: 1502 GCDMAQGFGIARPMPPEQLPDWIRHFQP 1529 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 7/172 (4%) Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIV 418 L + + L+ L L +I Q + + ER A+ +V Sbjct: 233 GNLAGLLSEHTLMSPLKLGLIDDALIDRQALARAREAMLDETARNERYQRALLDNFPFLV 292 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W D +T +A G S S+ G +R + + R+ + Sbjct: 293 WLKDTESRLLTANRAMAKAAG--SDSVIGKTD--RELWPPELASAYRADDLAVMASRQNK 348 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + E + D Q W P+ +G +L +G A DI+E+K++ E + Sbjct: 349 IVVEPIIV--DGQTVWHETYKAPVIADDGTLLGTVGFARDISERKRAEEAMQ 398 Score = 55.3 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 8/158 (5%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L+ + L + E S D ++ D + +A Sbjct: 829 LLSLEKLSGQFSQALHRLAAQEEARRLQENLSGLFDTLTDFIFILDQAGRILHYNRAVAE 888 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWM 495 LG ++ G + +H + + + R R + A + + Sbjct: 889 DLGYGQNTLKGKT---IAAVHPENLRQIAEEVTVDIISGR--RYSCPLPILCASGEQIMV 943 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 R+ +G IGI+ DI+E+ + E A Sbjct: 944 ETRVVNGYW-DGQPA-LIGISQDISERLMAEERQQLAA 979 Score = 54.2 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 59/226 (26%), Gaps = 33/226 (14%) Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVLGSG 415 +L L + A Q D ER G Sbjct: 519 GQLLGTFTAYYPSPTSPHEDYLGLLLQAAQLTALVIERQNSSQDLERSLATFRGIFDSIG 578 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVG 473 + ++ R + + GL+ S+ G I D + + + + Sbjct: 579 EALFIQGEDRRFLDVNTSAEQMFGLSRASLIGQTHE--SLIAPGMLDLEAIDQAISTALA 636 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + R + + +R+ ++ G + I A DI+E+K + + Sbjct: 637 GTPQAFETLARSSTE--RIFPIEVRLHT-ASYFGRPV-LIASAVDISERKNAELRLEVE- 691 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM-----VIDID 574 D L L D + ++ D+D Sbjct: 692 -HD--------------LAQALASGMQRDEVLGALLKAIQRFPDLD 722 >gi|222111019|ref|YP_002553283.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] gi|221730463|gb|ACM33283.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax ebreus TPSY] Length = 1294 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 139/574 (24%), Positives = 250/574 (43%), Gaps = 11/574 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + Q + E SL + + +WDW++ VT + GLA Sbjct: 696 LHDITERKQTEQRVREREELLSLTIEAAALGLWDWNLPSGEVTGDARWRAMYGLAPVEPG 755 Query: 447 GPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504 +W I D D L + V A W+ + + + Sbjct: 756 ASAAVHWASGITPEDIDVVTQELQRHLQEPHKPFDVTCEVLAPQGDGRWIRSVGKVVAYD 815 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + G R +G++ D++ Q+ + A D LTG+PNR RL ++ S Sbjct: 816 AAGQPARMVGMSIDVSSQRAQERQLERMAHYDALTGLPNRVMLERRLRAGMEHSRARGQ- 874 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V +D+D +K +ND LG A GD +LV + R+ L+ D +ARL G+ F I+L Sbjct: 875 QLGVAYLDLDGFKPVNDRLGHAAGDRLLVVVAERLKRALRLTDSVARLGGDEFVILLSGL 934 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ + + +S+A P L + VTASIG+ + + + +L++A+ AMY A Sbjct: 935 AHAEECERRLHTVMESVAAPYTLDGERVLVTASIGYTLYPDDEADADTLLRHADQAMYAA 994 Query: 685 KHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F + R+ ++ ++ +L A++ EL L P + + +VG EAL Sbjct: 995 KQAGRNRFHGFDAAEERARQLRREQCGELLRALQRGELTLFLQPKVDMRLGTVVGAEALA 1054 Query: 743 QWDHPKWGNISSSEFMLIAE-ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 +W HP+ G +S F+ + E + ++++ + I Q + + INI Sbjct: 1055 RWQHPERGLLSPVHFLHLIEGHTELQMRFGEWVVDTALQQIARLMAQGLE--LPVSINIT 1112 Query: 802 SKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L + M +++ + + +ES + + + L RLR +G+ ++ Sbjct: 1113 PEHLHRRGFADWMALRLAQHPAVPARLLAIELTESAALYDIDHVARELTRLRALGMQISF 1172 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL +P D +K + S + G AI++ +I +A + I+A+ + Sbjct: 1173 DDFGTGYSSLAYLRRLPMDHLKLDRSFVAGMLGDAGDRAIVQGVIGLAHSFGCGIVAEGV 1232 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 L +MGC + Q +A P+ + Sbjct: 1233 ETVEQGLALLQMGCHHAQGYCIAMPMPVEQFMDW 1266 Score = 101 bits (251), Expect = 9e-19, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 79/245 (32%), Gaps = 19/245 (7%) Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG----LW 355 S + A I+L++ G A+ L+ A ++ + Sbjct: 91 SGWLDAPAHWGAMISLSAACWLMGCLAWLLGRSTRLTAISLVVALTVLVPPALLPWTETA 150 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 A+ + + Q +V L G + A Q + + + SG Sbjct: 151 SALAAQEGSAPWQGIPWRYAFGVVALCGAVELLRARARSL--QTLGQHEDELLRVLKASG 208 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASG------------SMHGPIRNWLPYIHINDRDN 463 W+WD+ R T GLA+ + + W H +DR+ Sbjct: 209 GGRWEWDLRNSRFTYHGRFYRAFGLANSPDDEDFTPLRAFDVRESWQRWNARRHPDDRER 268 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ 522 L E R+R + + W++ R + +S G +LR GI DITE Sbjct: 269 LGAYLQRVQDGLEESFHAESRMRDDEGHWRWVVSRGHAVERDSAGRVLRMAGIDLDITEH 328 Query: 523 KKSLE 527 + + Sbjct: 329 HEMRD 333 Score = 72.3 bits (176), Expect = 4e-10, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 3/147 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + + A + VW+ + + + I GL G Sbjct: 443 VFVFHDMTQERRVRDELLAANRLLRQAGWMARLGVWEEEPGKGITYWSDVCFDIHGLDPG 502 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + ++ R+ L + +R E + AD + W+ +R P+ Sbjct: 503 TPLPR-DYVQQFVAPVWREAMHAALRDCLR-KRTVWSQEIEIVRADGRLVWVRVRGEPII 560 Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530 + ++R GI DI E +++ + + Sbjct: 561 EGD-RVVRVRGILQDIDEPRRAAQRLR 586 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 7/147 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGLASG 443 ++Q + +Q + S ER + + + + P LG Sbjct: 570 GILQDIDEPRRAAQRLRSSEERLARIFQLLPYPLGFSRREDGTYLDVNPAWEQALGYTRQ 629 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G L R L + YE + ++ + P+ Sbjct: 630 EAVGRTVVELGIYS----APTRAALLEAATAEGQLVGYELELTTRGGDKRTVLQSMSPI- 684 Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530 NG+ G +DITE+K++ + + Sbjct: 685 EVNGEACWLFG-LHDITERKQTEQRVR 710 >gi|167635770|ref|ZP_02394080.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|254742267|ref|ZP_05199954.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B] gi|167528879|gb|EDR91636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] Length = 735 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 270/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L + E R + + ++++ I + P N +++ G Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N VM +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG +GD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-DFSHLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732 >gi|297190328|ref|ZP_06907726.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces pristinaespiralis ATCC 25486] gi|197722426|gb|EDY66334.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces pristinaespiralis ATCC 25486] Length = 720 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 153/702 (21%), Positives = 279/702 (39%), Gaps = 28/702 (3%) Query: 274 HWNRWHAKVGYITFSGIACIAI-------LFCMSFYYPMVTASIARITLASIVLYYTYFI 326 R+ F A L ++ + A+ + Sbjct: 20 RLRRFATIWSRAIFPATATSLTRPEFEQHLLPLARELNSALHARPFTAQAAHQVGAALVG 79 Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 + L + L+ A R +Q AL G + Sbjct: 80 AHCTDPDALGRTLGVVDAYLVLYCGDPEQTAEENRARCARLQHALAAGFAQALRERTLAE 139 Query: 387 IQH-----VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + +LA Q + + R G+ + D+ + + + + G Sbjct: 140 QESIARSSLLARSEALQAMHATEARFRAVFEGAAIGIGIADLEGNVLEVNDTLTQMFGGL 199 Query: 442 SGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + +W H DR + V R + E D W + + Sbjct: 200 ENHVRGRKVTDWA---HPEDRPQVWQLYQELVTGEREHYRVEKPFYRNDGTVLWTNLTVS 256 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + +++G+ + + D TE++ + A D LTG+PNR F +RL + A Sbjct: 257 LLRDADGEPQYQLALFEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKAVSAPA- 315 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGI 619 R + +D+D +K IND LG A GD +LV + R+ +++ARL G+ F Sbjct: 316 --GARFGLCYLDLDGFKTINDSLGHATGDRLLVEVADRLQSCATAPGEMVARLGGDEFVA 373 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 + + + + A + ++A PI + RE TV SIG + + TS+E+L++A++ Sbjct: 374 LTTGPDTQNAVDELATRILAALATPIRVDGREFTVRGSIGIVEGPAGERTSAEVLRSADI 433 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 MY AK GGN E + + L A++ E ++ Y P++ L D + G Sbjct: 434 TMYRAKSAGGNRFEIADPEADARAITRHGLTNALPAALDRGEFFIEYQPLVHLGDGSVHG 493 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFI 796 EAL++W HP+ G + F+ +AE +I + ++L+ R W R + P+ I Sbjct: 494 AEALVRWCHPQHGVLGPDRFIPLAERTGLIVPLGRWVLQEAVRQARFWSRRHTDGGPLRI 553 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L L ++ ++ P + L +ES ++G E L +L ++G+ Sbjct: 554 NVNLSPAQLQHPGLVADTVDVLERSGLEPGALCLEVTESALIGADEDRLKPLRQLAEMGV 613 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911 + LDDFGT S L+ L +P +K + S G + I+ I+ +A ++E Sbjct: 614 DIALDDFGTGYSNLANLRRLPVSVLKLDRSFTQGMQRHPADPVDLKIVEGIVSLAHSLEL 673 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + + ++L +GCD Q + A P + I L+ Sbjct: 674 AVTVEGVETAAQAEQLRELGCDTAQGWYYARPGAPDRIHTLV 715 >gi|238784612|ref|ZP_04628618.1| Sensory box-containing diguanylate cyclase [Yersinia bercovieri ATCC 43970] gi|238714481|gb|EEQ06487.1| Sensory box-containing diguanylate cyclase [Yersinia bercovieri ATCC 43970] Length = 853 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 136/581 (23%), Positives = 271/581 (46%), Gaps = 15/581 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ + + + ER + D +W+ D + TI GL Sbjct: 282 LVLRRAMSEAQIADENRAALIASEERFRHVAEAATDWLWETDANLRITYLSQRFLTITGL 341 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + ++ + + + R LQ + +A + I + Sbjct: 342 SVEHWLGRNLD--SLLNCEIIPLRSWLQHTHLTESRNELQCTY--FSAQGEKRICRIYAK 397 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ NG+ + + G A+DIT + ++ E I + D LTG+PNR + L L A Sbjct: 398 PII-KNGETIGFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLRNLAA 456 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + ++ +D+DK+K +ND G GD VL ++ R+ L+ D++AR G+ F +I Sbjct: 457 SPHP-LVILNVDLDKFKPVNDTFGHIAGDKVLHQVSERLRSCLRDQDLVARQGGDEFILI 515 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + ++ +I + I P + +++I ++ASIG A + + E+L+ A++A Sbjct: 516 ITGLSSIKEIEQLCARVITHIESPYVINDQDIYISASIGIALAPQDSMQAEELLRFADIA 575 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK+ NH + ++ L AV+++E L Y P R+ ++ G Sbjct: 576 MYEAKNSDLNHWSFYSSEMNDRLMQRSELERFLRQAVKHNEFSLYYQPRYRIEGTQLTGA 635 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP G + +F+ +AEE +I +I+ + + + +D +W P + + + Sbjct: 636 EALVRWNHPVLGLLMPDQFIALAEETGLITSISDWTMLQACQDASTWH-----PSLIVSV 690 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI++ + L E ++ ++ T R++L +E +++ + + + + L+ +G+ L Sbjct: 691 NISAIEFRSQRLIERVRQVLLLTGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRL 750 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S L+YL PFD +K + S + + + +I+ II + + T+ A+ Sbjct: 751 SMDDFGTGYSSLNYLRRFPFDGLKIDKSFIDELAESHEGQSIVEGIINLGHALSMTVTAE 810 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + E + L + CD +Q + P+ + + L++ + Sbjct: 811 GVETEAQLGYLQSLMCDEVQGYLLGKPMRLHDLSVLIRNAY 851 >gi|324329298|gb|ADY24558.1| hypothetical protein YBT020_26680 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 892 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 184/843 (21%), Positives = 347/843 (41%), Gaps = 73/843 (8%) Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 K L+ +++ + I L + + ++ A+ + ++ YI + Sbjct: 54 AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287 GF K + S L + I + I F + L + W +I Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173 Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 S + I L+ Y + I T+ + Y F + G+K LI + Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNTGIKPSSEVSYLIHTASI 233 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384 + I + + K + ++ V + +LIG Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293 Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417 + +L + + +R D Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEDKVEEGASALSKSEQRYKSLFEDHPDA 353 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + ++ + + L +I + D D + L R Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDLKDHDLLKKALQLTKEGRPQ 411 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 L E R + + ++++ I + P N +++ GIA DIT + + + AF D Sbjct: 412 TL--EIRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ F L IL+ + T N VM +D+D++KKIND LG VGD +L+ + + Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQTSAN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAK 527 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ D++AR G+ F I+L + A A + + P + + E+++T S Sbjct: 528 RLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILTILNKPFFIKDEELSITPS 587 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG A + +E++KNA++AMY AK G N F + ++ +L A+ Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + +E +L Y P + ++++G EALI+W HPK G +S ++F+ +AEE I + ++L Sbjct: 648 QQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W +Q + + +N++ +L + ++ +T P + + +ES Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 + + + L +L+ +GI +++DDFGT S L+YL P +T+K + G + Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ SII ++K + +IA+ + E K L CD+IQ ++ P+ + +LL Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886 Query: 954 KER 956 ++ Sbjct: 887 HKK 889 >gi|207728048|ref|YP_002256442.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] gi|206591292|emb|CAQ56904.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] Length = 903 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 142/575 (24%), Positives = 261/575 (45%), Gaps = 12/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447 + + + + ER LAV + + + P IL G S Sbjct: 325 AVQKAHIVRELQDSEERYRLAVDNLTEGILVQSADGIILACNPSARRILRAGDTSPVGES 384 Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + + + + + R L + D W+ + P+ Sbjct: 385 HLTLMRRSLREDGSEIPVLERPTRVVLSTGRPLLGLTIGLELVDGDVVWVYENVLPIMRP 444 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + NDI + + + + A +D LTG+ NR FL R+ +LD +ATD Sbjct: 445 GDDTPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDGAATDGR- 503 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D +KK+ND G GD +L + +R+ ++ D LARL G+ F ++L Sbjct: 504 QVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQADTLARLGGDEFVVLLDHV 563 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + +IA P + E + ASIG A ++ +L+ A+ AMY+A Sbjct: 564 RSLDEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNA 623 Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F R +++ L A+ EL L Y PI+ + IVG EAL+ Sbjct: 624 KQNGRNQHRVFTERLSQRAQRRFQLEQHLRRALSAQELSLRYQPIVDAISMGIVGAEALL 683 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G++S +EF+ +AE+ +I AI ++LE+ R WR+ P FI +N++ Sbjct: 684 RWHSAELGDVSPAEFIPVAEDAGLITAIGEWVLEQACRQAAHWRNTCA-PDFFIAVNLSP 742 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + D L + ++++ +++ +E ++M + +L L +G+ +++DD Sbjct: 743 RQFGD-GLVPTLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P D +K + S ++G R +++ R+++ MA +++ T+ A+ + Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFISGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q +P+ + + L+ Sbjct: 862 LEQAEFLQAAGCDKLQGFLFGAPMSAAAYEERLRR 896 Score = 42.2 bits (98), Expect = 0.47, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 7/141 (4%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458 + +R V D ++ V +LG ++ + G + +IH Sbjct: 23 LPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSAHDIVGRELD--AFIHE 79 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + R + + + G E + D + + P+ G +A D Sbjct: 80 DSMQLARQRREWMIEHGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAVQVVARD 137 Query: 519 ITEQKKSLEG-ILCNAFQDNL 538 I ++K++ + A L Sbjct: 138 IRQRKQAEQALRESEANYRAL 158 >gi|83745662|ref|ZP_00942720.1| Sensory box/GGDEF family protein [Ralstonia solanacearum UW551] gi|207739491|ref|YP_002257884.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] gi|83727739|gb|EAP74859.1| Sensory box/GGDEF family protein [Ralstonia solanacearum UW551] gi|206592870|emb|CAQ59776.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] Length = 797 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 144/580 (24%), Positives = 271/580 (46%), Gaps = 11/580 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + +G+ ER LAV + V + + IL + SG + G Sbjct: 212 AIQKDTTERGLAESEERYRLAVSHLNEGVLIQALDGVVLAANASAERILRVRSGQLVGRN 271 Query: 450 R--NWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNS 505 R + + +D L S + + G L + + + W + I P+ Sbjct: 272 RFDMMQRVVDEHGKDVALDALPSKLVGQSGEPILGRIYGLLLKTGELIWARMNIIPIRRH 331 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + DIT+ K++ + + A D LTG+ NR F+ L + ++ + D++ Sbjct: 332 GDAAPTSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERA-RDESR 390 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + +D+D++K +ND G A GD +L S R+ + + D++ARL G+ F I++ Sbjct: 391 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 450 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++IA A + ++ P + + + SIG A + I+ +++L++A+ AMY A Sbjct: 451 VEGMRIAQLAERLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGTDLLRSADAAMYRA 510 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + + + ++ L A +NSEL LVY P L IVG EAL+ Sbjct: 511 KQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEALL 570 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+ K G +S EF+ +AEE +I I ++L R ++W + +N+++ Sbjct: 571 RWNSVKLGAVSPVEFIPVAEETGLIVPIGEWVLRRACEQAVAWYQALGY-DFRMAVNLSA 629 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ ++ +++T P+ +++ +ES++MG + R + L GI +++DD Sbjct: 630 RQFQTGDVVPMIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 689 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P VK + S + G +A+ +I+ MA+ + T+ A+ + Sbjct: 690 FGTGYSSLSYLQRFPISNVKIDRSFILGIPSDPDSVALTEAIVAMARALGMTVTAEGVED 749 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++ L + GC IQ ++ P+ + +LL+ +V Sbjct: 750 ADQVEFLAKAGCQEIQGYYIGKPVTADGFDRLLRAHLAVV 789 >gi|301056768|ref|YP_003794979.1| sensory box/GGDEF family protein [Bacillus anthracis CI] gi|300378937|gb|ADK07841.1| sensory box/GGDEF family protein [Bacillus cereus biovar anthracis str. CI] Length = 909 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 166/870 (19%), Positives = 347/870 (39%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160 Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274 + + + + L L+ + + ++ + L+ Y + Sbjct: 161 SSTSYIDIFVQLTYPMADLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKKPEKQEQILLTPKLGESIRLLLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + D + + + E R + +++ + P+ + I Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DYLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R C Y+Q + + PL +K L++ Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|28868489|ref|NP_791108.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213968377|ref|ZP_03396521.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato T1] gi|301384643|ref|ZP_07233061.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058904|ref|ZP_07250445.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato K40] gi|302133017|ref|ZP_07259007.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851727|gb|AAO54803.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213927015|gb|EEB60566.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato T1] gi|331015226|gb|EGH95282.1| sensory box protein/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 705 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 138/584 (23%), Positives = 262/584 (44%), Gaps = 12/584 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H + Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKSHSMILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT++K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITQRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L +A + + +++D +K IN+ G +GD VL+ ++ R+ E + D L R+ G Sbjct: 297 LTQAAVS-RWKLATLTVNLDGFKNINETWGHVLGDQVLLEVSHRLSECINASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ +RK++ +P + + I +TASIG A + + E++ Sbjct: 356 DQFALILMIRVGQPDTRQTLERIRKALRVPFMVEGQSIVMTASIGIALYPEDGEDARELV 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM AK G + + R+ ++ L AVE +VY P + L+ Sbjct: 416 RHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVEKQAFEIVYQPKLSLVT 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I GLEAL++W P +S + F+ + E L +I + ++++R+ I W+ Sbjct: 476 GRICGLEALLRWPRPGQQGVSPAVFVPVLESLGLIGEVGNWVVDRVCAQIAHWQRTGLGL 535 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +N++ + + ++ L ++ ++ +P +++ +ES +M N + L L+ Sbjct: 536 -FQVAVNVSGQQISNSSLVADIRQALTNHRVAPQWLEVELTESSLMENTSHTIATLETLK 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A ++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLG 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +IA+ + + L CD IQ ++ PL + L Sbjct: 655 LKVIAEGVETPEQLAFLRDNQCDQIQGYLISKPLPLAELETFLS 698 >gi|157959960|ref|YP_001499994.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC 700345] gi|157844960|gb|ABV85459.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella pealeana ATCC 700345] Length = 1072 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 137/565 (24%), Positives = 261/565 (46%), Gaps = 14/565 (2%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + S S + + D P I G + G + L H Sbjct: 502 RRALHQASAVFRHSAEGIIVTDANNHIELVNPAFTKITGYTLDDVKGKSPSILSSAHHQ- 560 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 ++F L + + + E + + + ++I + NS +++IG+ DI+ Sbjct: 561 -EDFYQQLWRSLSSKN-SWEGEIWNKRKGGKIYPEYLKITAVKNSKNKTIQHIGLFLDIS 618 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 K+ + I D+LT +PNR F RL +D + + N + + ID+D++K IN Sbjct: 619 NNKQYEQDIWYKTNFDSLTKLPNRHLFSSRLQQAIDSA-HNTNSQVAIFFIDLDRFKFIN 677 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 ++ G A G+ VL R+ +L D +AR+ G+ F +I N A + + Sbjct: 678 ELHGHAAGNKVLKQSATRLEAVLGPDDSIARIGGDEFVVISPQTGNVG-AEQLAQKLSDT 736 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +A P +E +++S G A + +L N+E AMY AK G H + F Sbjct: 737 LAKPYLFDNKETIISSSFGIAFYPEDGQDIEMLLHNSETAMYQAKRDGRAHYQYFSPEMN 796 Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ +++ L AV+ SE YL Y P+I + E+ +EAL++W P +G IS F+ Sbjct: 797 VEMLERMHLEQRLRKAVKQSEFYLEYQPVIDMHSGEVTSVEALVRWQDPDYGVISPQAFI 856 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN---ELCEGMQ 815 IAEE +I+ + ++L++ D+ W Q M + + IN++++ + + + ++ Sbjct: 857 PIAEEAGLIEPLGEWILQQALSDLAQWHAQGLM--LKMAINVSARQCIHSRDISFFDILK 914 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++K + + + +ES+++ + + L ++++G+ + LDDFGT S LSYL Sbjct: 915 QTLAKHDIAAENLHIEITESMLIEDKPQCLQTLESIKQLGVDIYLDDFGTGYSALSYLTQ 974 Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +K + S + ++++I+ MA+++E ++A+ + L +GCD Sbjct: 975 CPISVIKIDKSFIDNALDNPSDAKLIKAIVMMAQSLEMPLVAEGVETVEQWHFLRNLGCD 1034 Query: 934 YIQDSHVASPLGFNSILKLLKERFP 958 Y Q ++ PL +++ L+ P Sbjct: 1035 YAQGYLMSKPLAKAELVEFLRHAKP 1059 >gi|196036282|ref|ZP_03103680.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|195991074|gb|EDX55044.1| sensory box/GGDEF family protein [Bacillus cereus W] Length = 909 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 182/870 (20%), Positives = 356/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 T + +V L Y D FL +NL L + L S+L+++ Y Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392 ++ I + I IGL + + L + L+L + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ + I Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-RI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+IS EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDISPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R C Y+Q + + PL +K L++ Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|88798395|ref|ZP_01113980.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Reinekea sp. MED297] gi|88778835|gb|EAR10025.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Reinekea sp. MED297] Length = 723 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 147/570 (25%), Positives = 257/570 (45%), Gaps = 18/570 (3%) Query: 401 FSDGERQ----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 +D ER L + G+ + + P LG++ + G R++ + Sbjct: 149 LTDLERLEKRNQLLLKSIGEGILGLSTDGQVTFSNPVAQQTLGMSEQELEG--RSFSDIV 206 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVR-----AADNQFHWMIIRIRPMSNSNGDILR 511 + D + + + R Q + + PM + D+ Sbjct: 207 YHGDAEQPLVTWEYLPARLACEQGQAYHERIGVFWDRAGQLLPVEYKATPMM-VDDDLAG 265 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DITE++++ E + A D LTG+ NR +F L L SA + ++ I Sbjct: 266 IVIAFQDITERRRTEEQLARLAQYDALTGLVNRNAFNGLLKKALSRSARHEQP-LALLFI 324 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND G +GD +L + R+ + ++ DI+ RL G+ F I+L S + A Sbjct: 325 DLDQFKTINDNHGHEIGDSLLQEVAMRLTDCVRNGDIIGRLGGDEFVIMLESLQATKDAA 384 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + ++ ++ P + +I + ASIG A + S +T+ E+L+ A++AMY +K G N Sbjct: 385 RVSQSVLDALEAPFTIRGHQIFIGASIGIAVYPDSALTARELLRCADIAMYRSKEEGRNR 444 Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F S R + ++ DL A E + P I + E ++G E LI+W P Sbjct: 445 YRFFTDEMQESVREALQLEIDLRRAYRQQEFDIYLQPKICMATESVIGAEILIRWPRPDG 504 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDN 808 + F+ AEE+ +I I ++ I SW+ Q +P INI+ + L Sbjct: 505 SFLPPDVFIPKAEEMGLIHDIGEWVFRETCDTIRSWQQQNRIPLDFTFAINISMRQLHTG 564 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 L E + A++ + P+ +++ +ES++M +P + L L + I +++DDFGT S Sbjct: 565 HLAEDIAAIVKEVGIDPNCLEVEVTESIMMQDPRVTIDALNALHQQKIKISIDDFGTGYS 624 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LS+L +P D +K + S + AI+ +II + N++ +IA+ I E + + Sbjct: 625 SLSHLRQLPIDAIKIDKSFVQALESDGQADAIVNTIISLGHNLDMRVIAEGIETEANRQA 684 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956 LT GCD Q A P+ L L Sbjct: 685 LTAAGCDVAQGYFYAKPMCREDFLDYLDRY 714 >gi|288940775|ref|YP_003443015.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288896147|gb|ADC61983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Allochromatium vinosum DSM 180] Length = 1124 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 137/554 (24%), Positives = 248/554 (44%), Gaps = 14/554 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + V V IA + G A + G I R ++ Sbjct: 413 ILASIDVGVLAVSADGVIVEANRRIAEMFGYAIRELIGLPLQ--ELIPPAFRRAHVLHVE 470 Query: 470 SFVGY----RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 F+ RR + E D + I + + +G + + D+TE++ + Sbjct: 471 RFLHGSAYDRRMSERSELSGYRKDGSIFPVEISLSKIQ-VDGRWV-MVATILDVTERRLA 528 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E ++ +A D LTG+PNR +RL L S ++ ID+D +K +ND G Sbjct: 529 EEELVWHAIHDPLTGLPNRTMIHERLERALRRSKQQGQ-SVALLFIDLDGFKLVNDSHGH 587 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD++L ++ +R+ + ++ D + RL G+ F ++ + +A+ A + + P+ Sbjct: 588 QAGDELLKTVAQRLVDHVRPGDTIGRLGGDEFVVLCDHVESPAAVANLADRLNDLLREPV 647 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 L R + +ASIG A + ++ ++L+NA+ AMY AK +G + F R Sbjct: 648 TLSGRRLFASASIGLAIGHGTTHSADDLLRNADAAMYQAKEQGRDGWRFFSEEIHEQARR 707 Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + L A+E E + + PI+ + I G E L++W P G +S + F+ IAE Sbjct: 708 RLDIINGLRQAIERDEFQVRFQPILCAQSQIIRGAELLLRWF-PSGGEVSPAHFIPIAEM 766 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 I I ++ + WRD+ + ++ +N++++ L D L E + ++++T Sbjct: 767 SGSIVPIGKWVFRQACLAERQWRDRFGVEAPYVSVNVSARQLNDEALVEEFRRMLAETGA 826 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P RI L +E+ +M + + +L +L +G+ + +DDFGT S L+ L +P +K Sbjct: 827 DPERILLELTETSLMSDVIFNLSVLNQLAGLGLRVAVDDFGTGYSSLAQLLRLPLSKLKI 886 Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + G AI+ ++ MA+ + +IA+ + L +GCDY+Q H Sbjct: 887 DREFVDGLDKRHDSRAIVHAVCSMARAMNLKVIAEGVENASQFGYLRDLGCDYVQGFHFY 946 Query: 942 SPLGFNSILKLLKE 955 PL L LL E Sbjct: 947 RPLPPEEFLALLHE 960 >gi|85707914|ref|ZP_01038980.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1] gi|85689448|gb|EAQ29451.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1] Length = 787 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 158/746 (21%), Positives = 313/746 (41%), Gaps = 28/746 (3%) Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283 + + + F++++ G L + + + F +R Sbjct: 46 LTFYRAWTNAALGVFVAQMYATSVGPLTVGFWLATLIAIQLYGAFRER--QHSRAGDGAV 103 Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343 F + + P V S + L ++ + Y + Sbjct: 104 RSPFGWHMVFTVACGFLWSVPFVFFSQMGTPQEASALLVVAALL-MALSVYFFVSSPLNI 162 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + IG + + ++ + + I+ + LAT I Sbjct: 163 LAYTLLLSIGAGLPYAVSGEWTVLGAIALFEIATILGTFEVG--RSYLATRLAEDAIAEK 220 Query: 404 GERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 E SL + D +W+ D R + +P A L + + G L I Sbjct: 221 EEVVSLLLREFEENEADWLWEVDTRRRLRSVSPRFAFALNSSERDVEGKP--LLELIAGQ 278 Query: 460 DRD--NFRTILDSF---VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + F L + + +V + W + PM + G + G Sbjct: 279 TWESGKFAASLHELADKLRNKENFSNLIVQVSIK-GEERWWELSGTPMRDDRGKFTGFRG 337 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + +D+TEQ++S E I A D LT +PNR + L+ LD + R ++++D+D Sbjct: 338 VGSDVTEQRESSEKIAYLARYDTLTSLPNRLMLTEALSDALDYANQ-WRTRCALLMVDLD 396 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND LG GD +L ++ R+ L+ ++ RL G+ F +++ ++ + A Sbjct: 397 RFKAVNDSLGHITGDKMLAQVSARLEGLMGDKAMVGRLGGDEFAVVIRDASDLDFMRQLA 456 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 I + +S++ P + + V AS+G A T E+++NA+LA+Y AK GG Sbjct: 457 IRIIQSLSEPYQVDNHTLYVGASVGSAIGPRDGKTVEELMRNADLALYRAKDVGGGEHCR 516 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + +R ++ L A+ E L Y P++ E IV EAL++W+ + G + Sbjct: 517 FEPVLHASAEERRQLEASLRKALGLDEFVLHYQPVVDARSENIVSFEALVRWNSSEHGFV 576 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S +F+ +AE+ +I I ++L + + +W + + + +N++ + LL+ + + Sbjct: 577 SPGKFIPLAEDTRLIVPIGKWVLRQACFEARNWPEH-----VKVNVNVSPEQLLEPDFHQ 631 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ + P R+++ +ES+ + + +R L + +G S+ LDDFGT S L Y Sbjct: 632 EVVDALASSGLRPERLEIEVTESIFLRDASIARNALEQAMALGCSIALDDFGTGYSSLGY 691 Query: 873 LGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 L + F T+K + + + G+ + + +AI+ +++ MAK++E T A+ + + + Sbjct: 692 LRKLRFSTIKVDRTFVQGAAQGANESLAIINAVVAMAKSLEMTTTAEGVEDAEQAELIRN 751 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 +GCD IQ + P+ L+L Sbjct: 752 LGCDKIQGFYFGRPMSREEALRLFAS 777 >gi|94263465|ref|ZP_01287278.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1] gi|93456195|gb|EAT06334.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1] Length = 931 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 143/589 (24%), Positives = 260/589 (44%), Gaps = 17/589 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I + ++ +++ E + + + D V+ A +G Sbjct: 336 IQLLASLAEYLAPLLAARLESRRADEMVARILETIDEGFIIIDREFKIVSANRAYAEQVG 395 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMI 496 G + G + H D+ + + + V + A + ++ Sbjct: 396 YPLGEIIGRHCYKVS--HQIDQPCYLSGEECPVQHVFDTGTPCTVTHTHYNAAGEPLYVE 453 Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ + G + R I I DIT++K + AF D LT +PNR+ FLDRL Sbjct: 454 NKAFPLERDDLGVVRRAIEIVTDITDKKNREMEVHSLAFYDPLTRLPNRRLFLDRLEQAF 513 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 SA V+ +D+D +K +ND G +GD +L + +R+ E ++ D ++R G+ Sbjct: 514 SASARSGQ-HGAVLFLDLDHFKTLNDTRGHDIGDLLLTIVAKRLQEAVRGDDTVSRQGGD 572 Query: 616 RFGIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 F ++L + + A A +R ++ PI+L +E +ASIG + + + Sbjct: 573 EFVVLLRNLSPDRHAAVSQAGRVAEKIRVALDQPIDLDGQEHRTSASIGISLFLGHDTPA 632 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII 728 E+ K A+ AMY AKH G N F + DL A+E + L Y P I Sbjct: 633 DELFKRADAAMYQAKHAGRNRARFFDPEMQAELEQASALVMDLRQAIEQGQFQLHYQPQI 692 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 + I+G EAL++W HP+ G +S ++F+ +AEE +I I ++L+ + +W D Sbjct: 693 A-NNGRIIGAEALLRWRHPERGPVSPADFIPLAEESGLILPIGHWVLQEACSQLAAWDDI 751 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + +N+++ E ++ +++ T P R+KL +ES+VM + + Sbjct: 752 PAAGNFKLAVNVSAHQFRQPEFIAEIRQILAATGADPKRLKLELTESMVMTELADTVNKM 811 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 L+ +GI ++DDFGT S L+ L +P + +K + + + AI+ +II M Sbjct: 812 QELQVLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMG 871 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++ +IA+ + + + L R GCD Q + P+ LL Sbjct: 872 RTLDFQVIAEGVETKEQLATLARYGCDAYQGYLFSRPVPAAQFAHLLTS 920 >gi|28868556|ref|NP_791175.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28851794|gb|AAO54870.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 763 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 142/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%) Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453 ER L V+ + D + D+ V P I G + G L Sbjct: 169 SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 228 Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D ++ + + R ++ E D W+ + I P++N G + Sbjct: 229 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 284 Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545 + + DITE+K + E + AF D LT + NR Sbjct: 285 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 344 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 ++ L R TV+ +D+D +K +ND +G GD +L + R+ ++ Sbjct: 345 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 403 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D+LAR+ G+ F I+L+ ++ A + + I + ++I ++ SIG + Sbjct: 404 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 463 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723 ++L++A++AMY AK +G F S D ++I+ L A+EN + + Sbjct: 464 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 523 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI E +VG+EAL++WDHP G IS F+ IAE+L +I + +++ + D+ Sbjct: 524 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 583 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 +WR + + +N++ K+L + + +I+ T +++++ +ESV + P+ Sbjct: 584 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPAAQLQIEVTESVFLYQPDA 643 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901 +L ++R +G+ + LDDFGT S L Y+ P D VK + S ++ ++ AI+ S Sbjct: 644 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSQAIVSS 703 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ + + ++ I A+ + L +MGC Y Q + P+ ++ +++ Sbjct: 704 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 757 >gi|326387145|ref|ZP_08208755.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Novosphingobium nitrogenifigens DSM 19370] gi|326208326|gb|EGD59133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Novosphingobium nitrogenifigens DSM 19370] Length = 904 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 165/752 (21%), Positives = 318/752 (42%), Gaps = 39/752 (5%) Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL-------------SSSLIIFLFMYL 273 L S + F+++ + + + S+L+ + Sbjct: 44 AFLFGTSHNGSFVAREWWQMVVPMGLGLVLLAVVNHAYDDTVSLGVGGLSALLTLPGRFA 103 Query: 274 H--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 + A +T + + A + + + L ++ L + + Sbjct: 104 ARATRQSQATAHRMTMAALTIAAPMLGYGWAIAHWAHHGSVPWLQAVSLLAAILLAATTI 163 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDN--DIIQPALVGGLVLIVILIGFTVIQH 389 + A LL A + I++ + AI L + + L+ + ++ Sbjct: 164 QSGRLAGLLA-AQVGIWVGVTCVVSAIAGILSAIMGVAIAIIAYARQKESDLVECSRLEE 222 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 +Q I +D E W+ D + + + +A +LG + G Sbjct: 223 EARLQTRAQEILADFE------ETGQGWFWETDRRGNVLYISAPVAELLGRKVEDVTG-- 274 Query: 450 RNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 R ++ ++D+ N L + R R + + W I RP+ ++ + Sbjct: 275 RRFIDLFDLDDQSGNGERTLTFHLSARSSFSDLVVRAATNE-EERWWSITGRPIYDTFDN 333 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + G D+TE++++ + A D+LTG+ NR L IL ++ V Sbjct: 334 FQGFRGSGADLTERRRTQQHASRLAHFDSLTGLANRFFMSQSLEKIL-VAPQVQQRACAV 392 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +ID+D++K++ND LG GD +L + +R+ + + RL G+ F IIL Sbjct: 393 FLIDLDRFKQVNDTLGHPAGDQLLKQVAQRLERGVGAAGRVGRLGGDEFEIILAGRIERP 452 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 +A A + +S++ P L + + ASIG A +TS +++NA+LA+Y AK G Sbjct: 453 MLAQIAAHIIESLSQPYTLDLGRVMIGASIGIAIAPDDGVTSEALIRNADLALYAAKDGG 512 Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 + +R +++DL AV + L L Y P+++ E+I G EAL++W+H Sbjct: 513 RGRYHFYAHDLHSDAEERRRLEDDLRDAVTHGSLELYYQPVVQTTTEKITGFEALLRWNH 572 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P G IS ++F+ IAE+ +I I+ + L + D+ W + + +N+++ Sbjct: 573 PVHGFISPAKFIPIAEDTGLIGPISEWALRQACNDLAQWPAS-----VRVAVNVSALQFA 627 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 + L + + ++ R++L +ESV + + E + + L+ IG+ L LDDFGT Sbjct: 628 NPGLPGVVTSALAHAGIEADRLELEITESVFINDSEGTDAMFRALKAIGVRLALDDFGTG 687 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L YL PFD +K + S + G+T+ + AI+ SI+ +A+ + A+ + + Sbjct: 688 YSSLGYLKKAPFDKIKIDQSFVRGATQPGSRNGAIIASIVSLAEALGMETTAEGVETHDE 747 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + +GC ++Q PL + K L+ Sbjct: 748 LDLVRLLGCSHVQGYIYERPLSSEAATKRLES 779 >gi|218906478|ref|YP_002454312.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|218534830|gb|ACK87228.1| sensory box/GGDEF family protein [Bacillus cereus AH820] Length = 909 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 181/870 (20%), Positives = 355/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 T + +V L Y D FL +NL L + L S+L+++ Y Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLA 392 ++ I + I IGL + + L + L+L + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNLELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ + I Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R C Y+Q + + PL +K L++ Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|217969747|ref|YP_002354981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|217507074|gb|ACK54085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 1002 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 129/568 (22%), Positives = 244/568 (42%), Gaps = 16/568 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + +LAV S + + D G + G Sbjct: 436 QDITAQKEVELRLRQLALAVEQSPNTIVITDTDGRIEYVNEAFVRTTGYTAAEAIGQNPR 495 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L + + + R + EF D + + I P+ ++G + Sbjct: 496 LLNA-GKTSAATYADLWATL--GRGEVWRGEFINTRKDGGTYTELATIAPIKQADGSVSH 552 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ I DIT ++++ I A+ D LTG+PNR DRL + SA +M++ Sbjct: 553 YVAIKEDITGRREAEARIRQLAYYDTLTGLPNRSLMWDRLRHAIAASARS-GASGMLMLL 611 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-- 629 DID +K +ND G VGD +L + +R+ L+ D +AR+ + F I++ + Sbjct: 612 DIDHFKLLNDTQGHEVGDALLREVAQRLRGALREEDTVARVGDDDFAIVVENLGADRDEA 671 Query: 630 ---IADFAIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A + + + P L V AS+G + + +LK AE+A+ A Sbjct: 672 IGRAEKIAEHLHRCVTAPCELGLASGPYHVGASLGLTLFRGRNAAADAVLKQAEVAVARA 731 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F + ++ L A+ + L Y P + + ++G EALI Sbjct: 732 KDDGRNLIRFFSEAMQAVVAARAELELKLRAALACNGFRLYYQPQLD-RNGRVIGAEALI 790 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 + + IS + F+ +AEE +I I ++LE + +W+ + + + IN+++ Sbjct: 791 RCFDAEGEMISPAAFIPLAEETGLIVPIGEWVLETACAQLRAWQRTPSTAGLSLSINVSA 850 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + + + A I + P +++ +ESVV+G+ E + L + +++ +G+ LDD Sbjct: 851 RQFHQPDFVGKVAAAIERHRIRPGGLEIELTESVVIGDIETTVLRMRQIKALGVRFALDD 910 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +PFD +K + + + AI+R+I+ ++++++ ++A+ + Sbjct: 911 FGTGYSSLSYLKRLPFDQLKIDQMFVRDMEKDTSSEAIVRAILALSRSLDLKVVAEGVET 970 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948 + L GC+ Q P+ Sbjct: 971 AAQHELLLTRGCELFQGYLFGRPVPIED 998 Score = 77.7 bits (190), Expect = 9e-12, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 3/160 (1%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 +I + ++ A + + + + W +T Sbjct: 297 ATIIALATLGLLLALQAALHRSRRQLARSKRSFDALIDSRREATCAWRPDTTLLTCNERY 356 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 A +LG + S+ G W+ + R + + G L + R+R AD + W Sbjct: 357 AELLGTEAASLPGT--RWIDNVPEAKRAEVHAAIARMLQG-AGTLTTDRRLRQADGRTRW 413 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + P+ + G + I DIT QK+ + A Sbjct: 414 LRWLDLPVLDEEGRCVEVHSIGQDITAQKEVELRLRQLAL 453 >gi|256789507|ref|ZP_05527938.1| hypothetical protein SlivT_33928 [Streptomyces lividans TK24] gi|289773400|ref|ZP_06532778.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289703599|gb|EFD71028.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 714 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 138/625 (22%), Positives = 272/625 (43%), Gaps = 22/625 (3%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH-----VLATGYFSQG 399 + ++ G R + +Q A+ G + + + A G ++ Sbjct: 88 AYLVLYCGGDGDPEDLRARSARLQHAMAAGFAGALRARTLAEQEAIAQAALKAQGVVAEA 147 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + R G+ + D+ + + + + G+A ++ G + H + Sbjct: 148 LHASEARFRAVFEGAAIGIGIADLDGNVLQVNEALMRMFGIADPTLGGRRAT--EWTHPD 205 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D + + V R E D W + + + +++G + + D Sbjct: 206 DAPQTWRLYEELVRGEREHYHVEKAFYRPDGTVLWTNLTVSLLRDADGTPQYQLALMEDT 265 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE++ + A D LTG+PNR F +RL L+ R + +D+D +K + Sbjct: 266 TERRLLNLRLRYEATHDALTGLPNRSFFFERLEKALN---AGPGQRFGLCYLDLDGFKTV 322 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 ND LG A GD +LV + R+ +++ARL G+ F + + ++ + A + Sbjct: 323 NDSLGHAAGDRLLVEVADRLQACATAPGEMVARLGGDEFVALTTGPDTRHEVDELAGRIM 382 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++ P+++ RE+TV SIG + + + +E+L++A++ MY AK GGN E Sbjct: 383 NALLAPVSVDGRELTVRGSIGIVEGPAGERSPAEVLRSADITMYRAKSAGGNRFELADPE 442 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + L A+E E ++ Y P++ L D + G EAL++W HP+ G + Sbjct: 443 ADARVITRHGLTTALPAALERGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLGPDR 502 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIASKDLLDNELCE 812 F+ +AE +I + ++LE+ R WR++ P+ I +N++ L L + Sbjct: 503 FIPLAEHTGLIVPLGRWVLEQSVRQARVWRERYGESGAAGPLRINVNLSPCQLTHPGLVQ 562 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ +T +P + L +ES ++G + L RL ++G+ + LDDFGT S L+ Sbjct: 563 DTVEILERTGVAPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDDFGTGYSNLAN 622 Query: 873 LGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L +P +K + S + I+ I+ +A +++ + + + ++L Sbjct: 623 LRRLPVSVLKLDRSFTQSMQQFPADPVDLKIVEGIVALAHSLDLAVTVEGVETGAQAEQL 682 Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952 +GCD Q + A P + + +L Sbjct: 683 RILGCDTAQGWYYARPGPPDRLHEL 707 >gi|16519842|ref|NP_443962.1| conserved putative diguanylate cyclase/phosphodiesterase with PAS/PAC domains [Sinorhizobium fredii NGR234] gi|2496701|sp|P55552|Y4LL_RHISN RecName: Full=Uncharacterized protein y4lL gi|2182511|gb|AAB91764.1| conserved putative diguanylate cyclase/phosphodiesterase with PAS/PAC domains [Sinorhizobium fredii NGR234] Length = 827 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 144/584 (24%), Positives = 267/584 (45%), Gaps = 21/584 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + ++ + + + R + ++W + G + Sbjct: 246 YGTVEDIDDRRKMFEALKESEARFRAIADDAPVMIWVTGENGADDYHSRLWLETTGQTAE 305 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G WL +H +DR+ + R ++ E+R++ A W+I +P Sbjct: 306 QAAGK--GWLNAVHPDDRNAVERVFYQAFD-LREPVRMEYRLKRAGGGSAWVIDIGQPRF 362 Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556 S+G L ++GIA DITE++ + + I A D LTG+PNRQ + + D Sbjct: 363 ASDGTFLGFVGIALDITERRNAEQERLLAQKQIHHMARHDALTGLPNRQFLREEFERLSD 422 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 A + R ++ +D+D +K IND G A GD +L +T R+ LK DIL RLSG+ Sbjct: 423 HIA--PSTRLAILCLDLDGFKAINDAYGRATGDLLLRHVTERLRNFLKQSDILCRLSGDE 480 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F ++ + N++ + A + I P L + + +G A+ + S + E++K Sbjct: 481 FVVLRVGINSNAEARLLAQQLIDVIEAPYELAGTHVDLQVVVGLAAASKSDQSLDELIKT 540 Query: 677 AELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+ AK GG + + R +K L A+ EL + Y P+ L + Sbjct: 541 ADIALERAKTGGGGTIVQYEPKMDADLRARQRMKVSLRHALAKGELEVRYQPLANLRTGQ 600 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I EAL +W HP+ G +S +EF+ +AEE +I + ++L + + + W P + Sbjct: 601 ITTFEALARWPHPERGQVSPAEFIAVAEETGLIGPLGEWILRQACTEAVKWP-----PYV 655 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ + L ++ + T SR++L +ESV++ + + L +R++ Sbjct: 656 SVAVNLSPLQFRNQRLASTVRNSLEDTGLDASRLQLEITESVLLEECDSNLQTLKEIRQL 715 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ + +DDFGT S LSYL PFD +K + S + +++ +AI+R++ + +++ Sbjct: 716 GVIVAIDDFGTGYSSLSYLRTFPFDKIKVDRSFIADLPKSKESLAIVRAVAAIGRSLGII 775 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + + + + G D Q PL + + LLK R Sbjct: 776 TTVEGVERQDQLDTIKAEGFDEAQGYLFGGPLPASQAMALLKSR 819 Score = 88.9 bits (219), Expect = 4e-15, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 4/146 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + V + + E + W D + + P G A Sbjct: 119 VIVAIALDVTECRTAEAALQASVEHHRSLTELHPQVPWTADPSGEVLEIGPRWEK-TGYA 177 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G W +H +D + + L EFR+ AA+ + W R Sbjct: 178 PKEALG--AGWAKAMHPDDLGEVQREWAKSLAT-GEPLDVEFRLAAAEGGYSWYRSRAAT 234 Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527 +G ILR+ G DI +++K E Sbjct: 235 RRAEDGSILRWYGTVEDIDDRRKMFE 260 >gi|218886639|ref|YP_002435960.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757593|gb|ACL08492.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 739 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 132/579 (22%), Positives = 257/579 (44%), Gaps = 16/579 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ Q + + + A+ G + V+ + + + + ++G A Sbjct: 147 RELRETNERLVEYQALLQEKNQFLEALVEGMPNPVFYKTLEGNYIGCNRAFSRLIGRAPE 206 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSF--VGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G + + +R A + +++ Sbjct: 207 DIVGRSVH--EILPQEQACRVEDSGRRLTVQDDDGAGYSCMIDLRDAAGEDRVLVLYKSY 264 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + G +G D++E K+ I+ A D LTG+PNR R+ Sbjct: 265 FRDRTGQRAGEVGTFLDVSELKRKEAQIVHQATHDELTGLPNRMGLRQRMED--HALKGG 322 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + R V+ +D+D +K +ND LG AVGD++L ++ R+ + D++ARL G+ F ++L Sbjct: 323 PDARLAVLYLDMDNFKTVNDSLGHAVGDELLRAVAGRLVGMAPRRDMVARLGGDEFVVLL 382 Query: 622 I--SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +E + + ++ S P N + E+ V SIG + + +LKNAE+ Sbjct: 383 PLSAEGDGELAETESARIQDSFTRPFNAADHELYVMPSIGISVAPEDGRDPATLLKNAEI 442 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK +GG F + + ++ + +EN E + Y P + ++ ++ G Sbjct: 443 AMYRAKEQGGARFRRFTQAMNDDVTRRLAIEKSIRKGLENDEFVVFYQPRVDIVTGQVTG 502 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 +EAL++W P + EF+ +AE+ ++ A+ +L W D+ P+ I Sbjct: 503 MEALVRWARPDGTLVPPLEFIPVAEDTGLVVALGERVLRDACIQTRRWTDELG--PLRIA 560 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +NI+++ +L + +QA ++++ PS+++L +E+ +M + S +L RL GIS Sbjct: 561 VNISARQF-QPDLLDRVQAALAESGLPPSQLELEITETTMMRDLPTSVAILERLAAQGIS 619 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT S L YL P DT+K + S + E I+ +I+ M +N+ ++A Sbjct: 620 IAIDDFGTGHSSLYYLKNFPIDTIKIDRSFVRDVPGDEGDATIVSTIVTMGRNLSLNVVA 679 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + + + + L GC +Q + + PL + ++ Sbjct: 680 EGVETDDQLGFLRAHGCREVQGYYYSKPLPADGFADWMR 718 >gi|30265324|ref|NP_847701.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47530863|ref|YP_022212.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49188137|ref|YP_031390.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|165870073|ref|ZP_02214730.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167636402|ref|ZP_02394702.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|167641711|ref|ZP_02399955.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170689351|ref|ZP_02880545.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|170708844|ref|ZP_02899279.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|177654081|ref|ZP_02936091.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190567695|ref|ZP_03020607.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227818064|ref|YP_002818073.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|228930308|ref|ZP_04093313.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229600189|ref|YP_002869516.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|254686276|ref|ZP_05150135.1| sensory box/GGDEF family protein [Bacillus anthracis str. CNEVA-9066] gi|254724272|ref|ZP_05186056.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055] gi|254735229|ref|ZP_05192938.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western North America USA6153] gi|254744433|ref|ZP_05202113.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B] gi|254755737|ref|ZP_05207770.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum] gi|254759530|ref|ZP_05211555.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia 94] gi|30260002|gb|AAP29187.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47506011|gb|AAT34687.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49182064|gb|AAT57440.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|164714396|gb|EDR19916.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167510336|gb|EDR85738.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|167528236|gb|EDR91018.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|170126244|gb|EDS95136.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|170666719|gb|EDT17488.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|172080964|gb|EDT66043.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190561111|gb|EDV15084.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227005595|gb|ACP15338.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|228829351|gb|EEM74983.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229264597|gb|ACQ46234.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] Length = 909 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 181/870 (20%), Positives = 355/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 T + +V L Y D FL +NL L + L S+L+++ Y Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392 ++ I + I IGL + + L + L+L + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ + I Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKRMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R C Y+Q + + PL +K L++ Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|228917910|ref|ZP_04081446.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228936585|ref|ZP_04099380.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823100|gb|EEM68937.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228841707|gb|EEM86818.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 909 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 181/870 (20%), Positives = 355/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 T + +V L Y D FL +NL L + L S+L+++ Y Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392 ++ I + I IGL + + L + L+L + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ + I Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAISRSKISKRP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKRMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R C Y+Q + + PL +K L++ Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|301632470|ref|XP_002945308.1| PREDICTED: signaling protein ykoW-like [Xenopus (Silurana) tropicalis] Length = 834 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 137/570 (24%), Positives = 247/570 (43%), Gaps = 13/570 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 V + + R + D W+ D V + LG++ Sbjct: 264 HVRTFTDVTDYVSIQEALRQSEARWRSLTQLTSDWYWEQDAEFRFVRFDGNPDRELGVSD 323 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 S++G R LP H + + +E + ++ W I P+ Sbjct: 324 ESLYGKRRWELP--HAGVTQAQWAAHRAQLEAHAVFKDFEMQRVRSNGTAQWASISGVPI 381 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G Y G+A DITE+K++ AF D LTG+PNR+ DRL + LS D Sbjct: 382 FDEQGRFTGYRGVARDITERKRAEAETERLAFYDELTGLPNRRLLQDRLQQAMRLSVRDG 441 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ +D+D +K IND +G GD +L R+ ++ D +ARL G+ F ++L Sbjct: 442 K-HCALLFLDLDNFKTINDSMGHDWGDHLLRQAGMRLSGCVRASDTVARLGGDEFVLVLQ 500 Query: 623 SENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++ + A + ++ P L + T SIG A + K SE+L++A Sbjct: 501 GLDSVSERASAMAEVIAHKISLALGQPYQLGGCTLYSTPSIGIALFQGQKTAVSELLQHA 560 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LAMY AK RG N + F S + ++ D+ ++ E L Y ++ + Sbjct: 561 DLAMYQAKSRGRNTLCFFDASMQATANARSALETDMRAGLQRDEFLLHYQRVVDAQ-GAV 619 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G EAL++W HP+ G ++ EF+ +AE+ +I + +L + + W + Sbjct: 620 LGAEALLRWQHPQRGMVTPGEFISVAEQTGLIVPLGQLVLRLACQQLAHWAHHSACAHWT 679 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+++++ + + ++ P +++L +ES+++ + E + LR G Sbjct: 680 LAVNVSAQEFRHPGFVQQVLDALAHAQADPHQLRLELTESLLLHDVEECIAKMQALRAKG 739 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913 I LDDFGT S LSYL +P D +K S + + AI ++I + +++ + Sbjct: 740 IRFALDDFGTGYSSLSYLKRLPLDQLKIAQSFVRDVLTDPNDAAIACTVIGLGRSLGLDV 799 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 +A+ + + L GC Q P Sbjct: 800 VAEGVETTAQHQFLLHNGCPSFQGYLFGRP 829 >gi|229072815|ref|ZP_04206014.1| Sensory box protein [Bacillus cereus F65185] gi|228710306|gb|EEL62281.1| Sensory box protein [Bacillus cereus F65185] Length = 835 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 171/814 (21%), Positives = 344/814 (42%), Gaps = 36/814 (4%) Query: 170 LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL 229 LP + + + + F + + +++ V + Y + + ++ Sbjct: 28 LPSLSIHKQVIFSYKALPFFIIQYVLLFVGFAIKFIK--IYSIKGLAQFSFDSIFIVIMN 85 Query: 230 GYISIDFGFLSKLV--NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287 Y ++ F +LI ++ + ++I + + A + T Sbjct: 86 IYFTLTFILDLSSFRMLTKETWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTI 145 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-----------GYER 336 + LF ++F I ASI+L I+Y K ++ Sbjct: 146 ILVYGYIHLFQLNFGMKTSPEFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDY 205 Query: 337 AVLLIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 ++P + +I + L + + + Q + +++ Sbjct: 206 VRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLT 265 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 Q + + +R D V+ ++ + ++ + Sbjct: 266 TQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCE 323 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + + +I D + + L R L E R + + ++++ I + P N Sbjct: 324 VASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-IN 380 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 +++ GIA DIT + + + AF D LTG+PNR+ F L IL+ + T+ N Sbjct: 381 KEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DV 439 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L + Sbjct: 440 AVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYS 499 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A + + P + E+++T SIG A + +E++KNA++AMY AK Sbjct: 500 EKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKA 559 Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N F +++ ++ +L A++ +E +L Y P + ++I+G EALI+W Sbjct: 560 NGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRW 619 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HPK G +S ++F+ +AEE I + ++L + W +Q + + +N++ Sbjct: 620 KHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQ 678 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 +L + ++ +T P + + +ES+ + + L +L+ +GI +++DDFG Sbjct: 679 FNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFG 738 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL P +T+K + G + AI+ SII ++K + +IA+ + Sbjct: 739 TGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKELNLKVIAEGVETAE 798 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + L + CD+IQ ++ P+ + LL ++ Sbjct: 799 EWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 832 >gi|294010897|ref|YP_003544357.1| putative signal transduction protein [Sphingobium japonicum UT26S] gi|292674227|dbj|BAI95745.1| putative signal transduction protein [Sphingobium japonicum UT26S] Length = 895 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 165/718 (22%), Positives = 300/718 (41%), Gaps = 30/718 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 G A + + L + I L + + ++ L P + Sbjct: 95 GNAGHAVALAAMLLVDGVAIVLPRGARFQLLRPHHQKWLMLPMVLLSGLSFSLMLGPALI 154 Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 A L + + + G + L +I R D I Sbjct: 155 AGEPSRNLVAEMAVALMAVSIFGDRRLLGVSYF----------CGLLIASILHRSDFAQI 204 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF-SDGERQSLAVLGSGDI-VWDWDIVR 425 + ++V + A + + + +R SG W+ D Sbjct: 205 GLLISCIAAMLVAALRQAQADMNRAIAFHQRDLRAQRSDRLLREYEQSGRGWFWETDRHG 264 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGRLQYEF 483 + +A LGL + ++ G I DR + L + R G + Sbjct: 265 CIAYISDTLARTLGLGNEALIGRPIT--EIIRPGDRQDGDGERTLGFHLSARTGFAEIPV 322 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R A ++ W I +P+ N G + G D+TE ++S + A D+LTG+ N Sbjct: 323 RAAMAKDE-RWWSISGQPVFNEFGQFHGFRGSGTDLTEMRRSQAEVTRLAQYDSLTGLAN 381 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R + L + T+M++D+D++K +ND LG GD +L ++ RI ++ Sbjct: 382 RVQMMRSLEQAVAGKKGQPR-DCTLMMLDLDRFKIVNDTLGHPAGDALLRQVSERIQRVV 440 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 ++ R G+ F I+L + + + A A+ ++ P + + + SIG + Sbjct: 441 GNKGLVGRQGGDEFKILLPGRPDKIMLDHLARAIITDVSQPYMVEGTAVVIGVSIGISFC 500 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELY 721 +T+ E+++NA+LA+Y AK G + DR ++EDL A+ + L+ Sbjct: 501 PQDGVTADELIRNADLALYAAKGDGRGVYRFYSPEMHADAEDRRQLEEDLRRALVENALH 560 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 LVY P++ E+I G EAL++W HP G IS + F+ IAEE +I I ++L RD Sbjct: 561 LVYQPVVSSRTEQIAGYEALLRWQHPVRGAISPTLFIPIAEESGLIGPIGEWVLRTACRD 620 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W D + + +N++ + L + ++ + + R++L +ESV + + Sbjct: 621 AAQWAD-----GVRVAVNVSPIQFANQGLPSIVMNALAASGLTAERLELEITESVFLNDD 675 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK---RIAI 898 + + L+ RL+ IG+ L LDDFGT S L YL PFD +K + S + G+ K AI Sbjct: 676 DGTDLMFSRLKGIGVRLALDDFGTGYSSLGYLKKAPFDKIKIDQSFVRGAAIKGSPNSAI 735 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +++I+ +A+ + A+ + ++ + +GC +IQ PL + L+++ Sbjct: 736 IKAIVSLAEALGMDTTAEGAETQDELALIRNLGCSHIQGYVYGRPLPAADV--LIQQH 791 >gi|229095277|ref|ZP_04226269.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] gi|229114225|ref|ZP_04243646.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] gi|228669245|gb|EEL24666.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] gi|228688136|gb|EEL42022.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] Length = 569 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 261/566 (46%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E + +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQNLWKRILNGK--VWRGEIQNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----GKKEFGIIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L +E+ ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNEHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCMTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + D + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPD--YQEGLRLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 420 LSVRSILRRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGVLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 QSMGCDYVQGFYYAKPLSVGELKEKL 565 >gi|89901961|ref|YP_524432.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89346698|gb|ABD70901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 736 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 154/641 (24%), Positives = 268/641 (41%), Gaps = 53/641 (8%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVW 419 R + + L G I + +Q + S Q+L + + + Sbjct: 104 RDGSSFWAHLTGKLVNPADPLAGSIWIVDDIDEQKAAQAQLQSVLTEQNLILDNAMVGIV 163 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 R T+LG G + G R W Y+ D + G Sbjct: 164 FLR-NRIATRCNQRFETLLGYEPGELQGVSSRQW--YLTKQDWIEAEPRWKAPFAAGHG- 219 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT------------------ 520 + E ++R D +R + ++ S+ + I I DIT Sbjct: 220 FEGEIQLRKKDGTAIHCEVRAKAINASDPE-QGAIWITMDITARKTAENELLQARADLEK 278 Query: 521 ---------------------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 EQK + I A D LTG+PNR DR L ++ Sbjct: 279 LVEVRTLELSRTVQELKNKAAEQKTAEAYIQRLAHFDALTGLPNRLLLNDRCQQALSVAQ 338 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 +M +D+D +K +ND LG VGD+VLV L R+ ++ D ++RL G+ F + Sbjct: 339 R-GRQSVALMFLDLDHFKNVNDSLGHRVGDEVLVELAARLKAAVREQDTVSRLGGDEFIL 397 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L +++ A A + ++ PI + + E+TVT SIG A + + + A+ Sbjct: 398 LLPD-TDAMGAAHLAEKLLQTALQPILIEQHELTVTPSIGIALYPKDGTDLDTLSRCADA 456 Query: 680 AMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G N + +++ L A+E +L L Y P I LM ++VG Sbjct: 457 AMYRAKADGRNGYRFYTAQIQAHSDRMLLLDNALRRALERKQLELHYQPQIALMSGQVVG 516 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W HP+ G IS EF+ IAE +I I +++ R + +W + M PI + Sbjct: 517 AEALLRWTHPELGAISPVEFIPIAENNGLILPIGEWVMRTATRQLSTWIAR-GMAPITMA 575 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N+++ + L + + ++ P +++ +E V M +P + ++ L + G+ Sbjct: 576 VNLSALQFRNPNLPQLVTRILEDAALPPQLLEIELTEGVAMTHPLEAVAVMNELHQRGVR 635 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 + +DDFGT S LSYL +K + S + AI+ ++I MA ++ IA Sbjct: 636 MAIDDFGTGYSSLSYLKKFQVYKLKIDQSFVRDITEDPDDKAIVGAVISMASSLGLQTIA 695 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + E ++ L GC+ Q + + PL + ++++ Sbjct: 696 EGVETEGQLEFLRARGCNEAQGFYFSRPLPTQAFEDFVRKQ 736 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 5/139 (3%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + Q + + +G + R V I G + + + + Sbjct: 11 RRDALEELQLALREQQVILDTAGVGIVFI-KNRLVVRCNQRFGQIFGHSDAAAI--LGST 67 Query: 453 LPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 P ++ +D ++ +G + E ++ D W + + + N + Sbjct: 68 SPSLYPDDLAAHALAEAAYPAMAQGLTFKSEVLMKRRDGSSFWAHLTGKLV-NPADPLAG 126 Query: 512 YIGIANDITEQKKSLEGIL 530 I I +DI EQK + + Sbjct: 127 SIWIVDDIDEQKAAQAQLQ 145 >gi|332307023|ref|YP_004434874.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174352|gb|AEE23606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1503 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 136/569 (23%), Positives = 263/569 (46%), Gaps = 19/569 (3%) Query: 400 IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + E+ L ++ D V+ D ++ G + Sbjct: 942 LKVAEEQLKLFKRSIETISDGVFIADTSFRYISVNKAYCKYTGETRDQALASYLTFHQ-- 999 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + F + + + G E R + + + M + I +++ +G I Y+G+ Sbjct: 1000 YP---GAFTEEVKKSLRQK-GNWNGEVESRRINGEKYEMELNIDAINDEDGRISHYVGVF 1055 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT +K + + +L A D LT +PNR F + + ++ +D+D + Sbjct: 1056 SDITPRKSTEKELLKLANTDPLTDLPNRSFF-----QASHNNIVRRGTQHALICLDMDNF 1110 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 KKIND LG GD ++ + RR+ +L RL G+ F I+L + + + F+ + Sbjct: 1111 KKINDSLGHQTGDLLIKQIARRLQKLAGKSATCYRLGGDEFSILLDKDTDVHNVTHFSQS 1170 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + +A P + +E + ASIG A + + E+LKNA+ AMY AK+ GGN + F Sbjct: 1171 ILDDLARPFLINHQEFVLGASIGIAFFPEDGSSPQELLKNADTAMYFAKNAGGNKYQFFS 1230 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ ++ I+ + ++ + Y P I + +++ +EAL++++HP+ G +S Sbjct: 1231 GEMNQNAVRQLQIENLIRHGLKEDLFNVYYQPKIDIATGKLLSMEALVRFEHPEKGIVSP 1290 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++F+ +AE+ + I +L + D W + +NI+++ +L E + Sbjct: 1291 AQFIPLAEQTGQVIDIGEVVLRKACEDTKRWVKAGIFTG-RVAVNISARQFELPDLDEKI 1349 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ K SP ++ +E +M +P+ + ++ RLR+ GI L LDDFGT S L+YL Sbjct: 1350 ADILQKADLSPLHLECEITEGTLMQDPDNALRMMTRLRERGIHLALDDFGTGYSSLAYLK 1409 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P +T+K + + + + + +II +A N+ ++A+ + E + L R C Sbjct: 1410 RFPLNTLKIDKAFIDDIATSSVDRHMTAAIITIAHNLGLKVVAEGVEHEEQMSILRRYEC 1469 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVK 961 + +Q + PL + +LLKE L + Sbjct: 1470 EMLQGYLYSKPLSSSRFERLLKENHQLNR 1498 Score = 108 bits (271), Expect = 4e-21, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 4/196 (2%) Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 + + + + + W + I + + ALV +L + + V Q+ + Sbjct: 756 FGQYQFEVQSRYNLNPWSDSQSLTINIEPPLWLHRNALVLYCILALFIALSIVKQYR-SK 814 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 I ER L + SGD +WDWDI + +V + I+ + + Sbjct: 815 RIARLAITESEERLKLTLWSSGDELWDWDIYQGQVFRSNTWG-IMDFPQDDIRVN-SAYQ 872 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRY 512 IH ND + L+ + + + +R ++ W++ R + + +SN +R Sbjct: 873 ANIHQNDIKRVQDALNEHLQDKTEHFEVTYRASTFKGEWLWVLDRGKVVSRDSNNQPIRM 932 Query: 513 IGIANDITEQKKSLEG 528 G +I+ K + E Sbjct: 933 TGTFKNISHLKVAEEQ 948 >gi|229199474|ref|ZP_04326136.1| Sensory box protein [Bacillus cereus m1293] gi|228584002|gb|EEK42158.1| Sensory box protein [Bacillus cereus m1293] Length = 735 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + +R D V+ ++ + ++ + + L Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +I D D + L R L E R + + ++++ I + P N +++ G Sbjct: 232 FIDSKDHDLLKKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA DIT + + + AF D LTG+PNR+ F L IL+ + N V+ +D+D Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVIFLDLD 347 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F I+L + A A Sbjct: 348 RFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + P + + E+++T SIG A + + ++KNA++AMY AK G N Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFVF 467 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ +L A++ +E +L Y P + ++++G EALI+W HPK G + Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIV 527 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S ++F+ +AEE I + ++L + W +Q + + +N++ +L Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+Y Sbjct: 587 TISKVLEETELQPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732 >gi|225862602|ref|YP_002747980.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|225789508|gb|ACO29725.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] Length = 567 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 140/566 (24%), Positives = 256/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL++ + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPGEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 538 KSMGCDYVQGFYYAKPLSAAELKEKL 563 >gi|229015952|ref|ZP_04172914.1| Sensory box/GGDEF [Bacillus cereus AH1273] gi|229022170|ref|ZP_04178721.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228739171|gb|EEL89616.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228745345|gb|EEL95385.1| Sensory box/GGDEF [Bacillus cereus AH1273] Length = 569 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 144/569 (25%), Positives = 263/569 (46%), Gaps = 29/569 (5%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S + LA+ S IV D I + G L H Sbjct: 14 SSLQDLKLALDESS-IVAITDRNGRITYVNDKFCEISKYKREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ + + ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMLGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ + + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTMKCTGIEALVRCNTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + + +N++ + L+ + Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--CQEGLKLSVNLSIQQLMQKQFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + PSR+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 LSVRSILKRTGFPPSRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKKLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSIL-KLLKE 955 MGCD++Q + A PL + KLL + Sbjct: 540 QLMGCDFVQGFYYAKPLDVGELKGKLLTD 568 >gi|328886877|emb|CCA60116.1| Sensory box or GGDEF family protein [Streptomyces venezuelae ATCC 10712] Length = 721 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 135/580 (23%), Positives = 255/580 (43%), Gaps = 14/580 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A + + R G+ + D+ + + + + G Sbjct: 142 EAIARSALSARSAAEIALHATESRFRAVFDGAAIGIGIADLDGNVLEVNETLTRMFGGME 201 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + + ++H D + + D V R + E D W + + + Sbjct: 202 GPLRTRKVS--EWVHPEDGPHVWKLYDELVRGDREHYRVEKPYYRGDGTVLWTNLTVSLL 259 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +++G + + D TE++ + A D LTG+PNR F +RL L + Sbjct: 260 RDADGTPRYQLALMEDTTERRLLHLRLRYEATHDALTGLPNRTLFFERLEKALA---PGE 316 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIIL 621 N R + +D+D +K IND LG + GD +LV + R+ + +++ARL G+ F + Sbjct: 317 NARFGLCYLDLDGFKVINDSLGHSTGDRLLVEVADRLQSCVTGSGEMVARLGGDEFVALT 376 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + ++A P+ + RE+TV S+G + + T +E+L++A++ M Sbjct: 377 TGAAGEQDVTELADRILAALATPLRIDGRELTVRGSLGVVEGPAGERTPAEVLRSADITM 436 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK GGN E + + L A+E E ++ Y P++ L D + G E Sbjct: 437 YRAKSAGGNRFELADPEADARAITRHGLTTALPTALERGEFFIEYQPLVHLDDGSVHGAE 496 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILI 798 AL++W HP+ G + F+ +AE+ +I + ++L+ R W+ ++ P+ I + Sbjct: 497 ALVRWCHPQHGVLGPDRFIPLAEDTGLIVPLGRWVLQEAVRQARFWQTRHSDGGPLRINV 556 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ L L ++ ++ P + L +ES ++G E L +L ++G+ + Sbjct: 557 NLSPTQLHHPRLVADTVDVLERSGLEPGALCLEVTESALIGADEDLLKPLRQLAEMGVDI 616 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTI 913 LDDFGT S L+ L +P +K + S G + I+ I+ +A ++E + Sbjct: 617 ALDDFGTGYSNLANLRRLPVSVLKLDRSFTRGMQQHPVDPVDLKIVEGIVSLAHSLELAV 676 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + ++L +GCD Q + A P + I LL Sbjct: 677 TVEGVETGAQARQLRDLGCDTAQGWYYARPGAPDRIHSLL 716 >gi|228955597|ref|ZP_04117597.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804073|gb|EEM50692.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 835 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 171/814 (21%), Positives = 344/814 (42%), Gaps = 36/814 (4%) Query: 170 LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL 229 LP + + + + F + + +++ V + Y + + ++ Sbjct: 28 LPSLSIHKQVIFSYKALPFFIIQYVLLFVGFAIKFIK--IYSIKGLAQFSFDSIFIVIMN 85 Query: 230 GYISIDFGFLSKLV--NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287 Y ++ F +LI ++ + ++I + + A + T Sbjct: 86 IYFTLTFILDLSSFRMLTKETWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTI 145 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-----------GYER 336 + LF ++F I ASI+L I+Y K ++ Sbjct: 146 ILVYGYIHLFQLNFGMKTSPEFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDY 205 Query: 337 AVLLIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 ++P + +I + L + + + Q + +++ Sbjct: 206 VRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLT 265 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 Q + + +R D V+ ++ + ++ + Sbjct: 266 TQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCQ 323 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + + +I D + + L R L E R + + ++++ I + P N Sbjct: 324 VASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-IN 380 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 +++ GIA DIT + + + AF D LTG+PNR+ F L IL+ + T+ N Sbjct: 381 KEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DV 439 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L + Sbjct: 440 AVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYS 499 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A + + P + E+++T SIG A + +E++KNA++AMY AK Sbjct: 500 EKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKA 559 Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N F +++ ++ +L A++ +E +L Y P + ++I+G EALI+W Sbjct: 560 NGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRW 619 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HPK G +S ++F+ +AEE I + ++L + W +Q + + +N++ Sbjct: 620 KHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQ 678 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 +L + ++ +T P + + +ES+ + + L +L+ +GI +++DDFG Sbjct: 679 FNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFG 738 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL P +T+K + G + AI+ SII ++K + +IA+ + Sbjct: 739 TGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKELNLKVIAEGVETAE 798 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + L + CD+IQ ++ P+ + LL ++ Sbjct: 799 EWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 832 >gi|291569908|dbj|BAI92180.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 612 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 144/538 (26%), Positives = 251/538 (46%), Gaps = 15/538 (2%) Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEF 483 V + G G L DR + + L + G + Sbjct: 73 IVFVNKAFTRMTGYGPTEAIGQTPRILQG-EKTDRTILERMKLDLKA-----GGVFYGQT 126 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 D + I P+ N +I Y+ I D+TE++ ++ A D+LTG+ N Sbjct: 127 INYRKDGREFVNEWHIEPIYNDRQEITHYLAIQRDVTERQNQQNRLIYEANHDSLTGLYN 186 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R F L +D + + ++ +D+D++K IND G GD +L+ + R+ + Sbjct: 187 RGYFRTELQKAIDRTQDSQDYLFGLLFMDLDRFKLINDSFGHQAGDQLLIEIGDRLQSCI 246 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV--TASIGFA 661 + DIL+R G+ F I++ + +I+ ++++I PI L E + + SIG A Sbjct: 247 RPQDILSRWGGDEFAILIDDIQDLSEISQLTHKIQQTIKKPILLGEENLETVTSLSIGIA 306 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSE 719 + S +ML++A+ A+Y AK RG F + ++ ++ DL A++ E Sbjct: 307 LSSMGYNCSEDMLRDADTALYRAKERGKGSYAIFTQAMHHQVRQQLQLETDLRYALKRQE 366 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L L Y PII + IVG EAL++W+H G +S ++F+ IAEE +I + +++E+ Sbjct: 367 LILNYQPIISMTTNRIVGCEALLRWEHKTLGWVSPAKFIPIAEETGLICPLGDWVIEQAC 426 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 W P FI +N+A+K L + E +Q ++ T SP IK +E+ + Sbjct: 427 IQAKQWESIYQDLPPFISVNLATKQLTQPGIVEKIQEILEATKCSPELIKFELTETAIAE 486 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897 + E + L +++ +GI L +DDFGT S LS L P DT+K + S + G E + Sbjct: 487 STEVAVTTLRKIKDLGIRLCIDDFGTGHSSLSRLSCFPIDTLKIDRSFIKGINASEHQTK 546 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I +I+ +A+++ IA+ I +L GC+ Q +A P+ + ++L + Sbjct: 547 IAYAIVKLAQSLGMETIAEGIENLEQFCQLKSWGCELAQGFLMAEPIASETFQEVLNQ 604 >gi|146280570|ref|YP_001170723.1| hypothetical protein PST_0174 [Pseudomonas stutzeri A1501] gi|145568775|gb|ABP77881.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 931 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 131/563 (23%), Positives = 264/563 (46%), Gaps = 12/563 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + S E+Q LA + + + + + + G + + G + Sbjct: 374 ELRSQAEQQRLAATVFEAASEGMVIMNDHYRVLAVNDACCALSGYSREELIGH--SVARI 431 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + + + G Q E + + +++R + ++N + + Sbjct: 432 AGSQESQRQYQTMREALE-LHGHWQGELIETRKSGEVYPQWVQLREVRDANDSVTHVVAF 490 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D++ ++K E + D+LTG+ NR +RL + V+ ID+D+ Sbjct: 491 ISDLSVRRKIEERLRYLTHYDDLTGLANRGLLKERLHEACQRVRRNGR-NMAVLYIDLDR 549 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +N+ LG D +L ++RRI + L D +ARLSG+ F +++ + + +A Sbjct: 550 FKLLNESLGHEAADALLREMSRRITQTLSEADTIARLSGDEFVVLIDAYGSLSSLAHLGS 609 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + I P+ + E+E+ ++ASIG + + + +L+ A +AM AKH GGN ++ F Sbjct: 610 RLLQRIRKPVIIDEQELVISASIGVSLMPDNSRDAEVLLRQANMAMQQAKHLGGNTLQFF 669 Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + ++ L A+++ +L + Y P + L ++ + EAL++W HP+ G ++ Sbjct: 670 TDRPQASSMQYLQLENQLRKALDSGQLEVFYQPRLTLANDALDAAEALVRWRHPERGLVA 729 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 + F+ +AEE +I + F+L R W+ Q I I +N++ K L Sbjct: 730 PAHFIPLAEETGLIIPLGEFVLREACRQARQWQQQGLAE-IRISVNLSVKQLRQGNFVSL 788 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ ++ +T + ++L +ES ++ + + + + +LR +G+ L +DDFGT S LSYL Sbjct: 789 VRQVLEETGLPATMLELELTESQLLDDIDNAISISEQLRALGVRLAIDDFGTGFSSLSYL 848 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P D VK + S ++ + + AI R+II M ++E ++A+ + + + L Sbjct: 849 KRFPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANQ 908 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 CD IQ ++ P+ +LL+ Sbjct: 909 CDEIQGYLLSPPVPAEQFAELLR 931 Score = 117 bits (293), Expect = 1e-23, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 2/154 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + V + ++ + R +LA+ SG +WDWD+ + V + + + G+ Sbjct: 235 LEQRVAERTAELAQLAEELGESETRLNLALDASGLGLWDWDLQNNHVHHS-RLEVVFGIG 293 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 H + LP IH D + R IL + + + E+R AD W+ R R Sbjct: 294 RQHRHDEDGSPLPDIHPKDLEGVRAILIAHLKGETEQFAVEYRALRADGSEIWLEDRGRV 353 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + ++ G LR IG DI+E + E A Sbjct: 354 IQRDAGGRALRMIGTRRDISELRSQAEQQRLAAT 387 >gi|118581894|ref|YP_903144.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118504604|gb|ABL01087.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] Length = 729 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 156/627 (24%), Positives = 292/627 (46%), Gaps = 33/627 (5%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + I ++T L + +V + T+ + AT Q + Sbjct: 119 AGTAVARIEASRSLTPLLLRTFAVALCSAIIAAVVFYMLRTLP--LRATSRAYQALDESE 176 Query: 405 ERQSLAVLGSGDIV----WDWDIVRD-----RVTTTPDIATILGLASGSMHGPIRNWLPY 455 + L + + D+D D + P A + G ++ G L Sbjct: 177 SKYRLLYESMREGMALHHMDFDENGDFAAISVIDANPSCAAMFGCDPQTLIGSDSIALFG 236 Query: 456 IHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + FR L + + +Q+E + DN + + S +G Sbjct: 237 ------ETFREYLSELLRLLEQGTSIQFELTLPRTDNLY-----SVHAFSPDHG---LVA 282 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + DITE++KS + I A+ D+LT +PNR FLDRL + + D+N V+ +D+ Sbjct: 283 TLFEDITERRKSEQQIQHMAYFDSLTDLPNRVLFLDRLRQAIAHALRDEN-SLAVLFLDL 341 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K IND LG + GD +L+ +TRR+G ++ D LARL G+ F +I+ + Sbjct: 342 DRFKDINDTLGHSAGDQLLIQVTRRLGRQIRSCDTLARLGGDEFVVIVTDLGKKMNATRV 401 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + +I P + RE+ VT SIG A + + ++K+A+LAMY +K G N Sbjct: 402 AQDLINAIQPPFLIAGRELHVTTSIGIALFPDDGNNAETLVKHADLAMYSSKESGRNRYN 461 Query: 694 SFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + S + + ++ + L A+E E Y+ + PI+ D +V EAL++W+HP G Sbjct: 462 FYSASMNQKALMRMETEAGLRNALERREFYVEFQPIMNAADSTVVAAEALVRWNHPTRGR 521 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I +F+ +AEE ++ + ++L + I +W D P I +N++S+ + + Sbjct: 522 IPPDQFIDLAEETGLVVPLGEWVLRTVCSRIKTWSDAGL-PLIRFSVNVSSRQIERQDFA 580 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E ++ + ++ + +++++ +ES ++ + + + L L++ G+S +DDFGT S L Sbjct: 581 EIVRNALRESGANSAQLEIELTESCLIRHSDTNISDLFGLKEWGVSFAIDDFGTGYSSLG 640 Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 Y+ +P D +K + S + + AI+ +II M++ + IA+ + ++ L Sbjct: 641 YIKTLPIDHIKIDRSFVRDISTDFHDQAIVEAIIAMSQRLGIRNIAEGVETIEQVRFLQE 700 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 GC+ IQ + PL ++ +LL+ + Sbjct: 701 RGCEEIQGYYFHRPLSAEALEELLRAQ 727 >gi|90022687|ref|YP_528514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Saccharophagus degradans 2-40] gi|89952287|gb|ABD82302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Saccharophagus degradans 2-40] Length = 878 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 131/584 (22%), Positives = 271/584 (46%), Gaps = 11/584 (1%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 VL +++ + ER + + + + + Sbjct: 284 VLKGKRHHILIMRDTTEIEIARAQHEDEVERFRILADLAPVGILQANSDWSGIYANDRWC 343 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 I G + + WL IH + N L + + + + E +++ W+ Sbjct: 344 EIAGRSMSDIL--ELGWLSAIHPDHFHNVIEPLRTAISEGKE-FKRECLFLKPNSEQTWV 400 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + RP ++NGDI +I D T + ++ + + A D LTG+ NR F RL L Sbjct: 401 ELHARPQISTNGDITGFIATILDSTFRHEAEDKLRELAEHDPLTGLANRAMFQHRLEHGL 460 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + + ++ +D+D +K +ND LG GD++L+ + +R+ + ++ D +AR+ G+ Sbjct: 461 SRTHRHGS--LALLCLDLDGFKNVNDTLGHDSGDELLIEVAKRLTKCVREEDTVARVGGD 518 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT-SSKITSSEML 674 F I+L ++ A+ + + S+ P ++ +E+ ++ SIG T K S ++ Sbjct: 519 EFMILLEGLKDAQIAAEVSEKILNSLEPPCSINRQEVFISTSIGITFATKGDKNDSKSLM 578 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K A++A+Y AKH G N+ + + R +R+ + L A++ +E + Y L Sbjct: 579 KQADMALYRAKHEGRNNYQYYSPDLERASQERLYLGNSLHHALQRTEFQVFYQFKSSLST 638 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-M 791 ++ G EA+++W+HP+ G + +F+ I +E +I ++ ++ W+ + Sbjct: 639 HKVTGFEAVLRWEHPRRGQLQPDQFIPILDESGLIVPVSRWLTHTSFMQHAKWKAKGLIE 698 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 I +N++ + L D G+ I + P+ + + +E+ ++ + E++ L L Sbjct: 699 KDAKIAVNVSPRLLRDPYFIRGLANSIQDSKIDPTSVIIEITETALLEHSEQTTDALNGL 758 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 ++IG++++LDDFGT S L++L P D +K + S + AI++++I +AK++ Sbjct: 759 KRIGVAISLDDFGTGFSSLTHLKRYPIDQIKIDRSFVQNLLKDSGDKAIVKAVIVLAKSL 818 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + T++A+ + + + L + CD Q ++ P I LL Sbjct: 819 KLTVVAEGVEDKATLDYLASLNCDEYQGFYLNKPQPAEEIENLL 862 >gi|218438075|ref|YP_002376404.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] gi|218170803|gb|ACK69536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] Length = 812 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 172/804 (21%), Positives = 336/804 (41%), Gaps = 50/804 (6%) Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250 Y II L + + + + ++ L+ + Y + G LS +++ G Sbjct: 13 YSLAIICPLLALGVRYLLNWALGNNAPLLIFIIPVIITAWYGGLLPGILSTVISAYLGNY 72 Query: 251 LIWRAC-----------SEIALSSSLIIFLFMYLH--------WNRWHAKVGYITFSGIA 291 I + S IFL ++ ++ + Sbjct: 73 FFIHPTEQFKILSLPETVRIIIFLSEGIFLSIFFEYYKRLNTKTSQIVESLRESEERYRL 132 Query: 292 CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI-W 350 + + + I L + + G ++ + Sbjct: 133 LVEGIEDYGIFMLDGQGRIISWNLGAERIQGYQSTEIIGRH---YSIFFTTTDTSAKVPE 189 Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-- 408 I R + + G L I++ Q+ G+ +Q+ Sbjct: 190 KILQTALKQGRFKGEGWRRRKDGSLFWASIVLSPVFAQNRQLKGFAKITRDISERKQAEV 249 Query: 409 -------------LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-P 454 LA+ S IV + I G + + G + Sbjct: 250 QKNKLLKDLTDLKLALDQSA-IVAVTNSQGIITAVNDQFCQISGYSKEELIGKTHRIINS 308 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H F L + + + + E R+ QF+W+ I P N N +Y Sbjct: 309 GYHS---KKFFQQLWATISQGK-IWRGEICNRSKTGQFYWVATTIVPFLNQNNQPFQYFA 364 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DIT++K + + + D+LTG+PNR + RL + + N ++ ID+D Sbjct: 365 IRFDITQRKLAEKRLRHEVLHDSLTGLPNRTLLIQRLEQVRHRAKRKANYCFALLFIDLD 424 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG +GD VL+++ R+ E ++ D +ARL G+ F I+L +I Sbjct: 425 RFKNINDNLGHPIGDRVLITIASRLQECVRSLDTVARLGGDEFIILLDELEEEKEIFKII 484 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + K + P+ + + +++TASIG A + + +++S++L+NA+LAMY K+ G Sbjct: 485 ERIEKQLTTPMVIEGQTLSLTASIGIA-FNDTNLSNSDLLRNADLAMYRVKNEGKAGYAI 543 Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 ++ ++ L LA+E E L Y PI+ L ++G EALI+W HP+ G I Sbjct: 544 YQSEMYAQAQALWELENHLKLAIERQEFLLYYQPILSLKTLTVIGFEALIRWQHPQRGLI 603 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELC 811 S F+ +AEE +I AI ++L++ + + +WR++ + I +N++++ L + Sbjct: 604 SPVHFIPVAEETDLIVAIGEWVLQQSCQQLSAWREKYPQANHLTINVNLSNRQLEKDNFV 663 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + ++ +T +++KL +E+++M N + L +L++ I++++DDFGT S L+ Sbjct: 664 YKLDNVLQQTGLPATQLKLEITETLLMTNLAAAIATLSQLKQRNINISIDDFGTGYSSLN 723 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P ++K + S + E I+++I+ + + + +IA+ I + +++L Sbjct: 724 YLCRLPVSSLKIDRSFVANVHEDSKNLQIIQTILSLGEQLMIEVIAEGIETQKHLEQLQE 783 Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953 +GC Y Q + P+ + +L+ Sbjct: 784 LGCQYGQGYLFSKPVNCEAAEQLI 807 >gi|260222170|emb|CBA31467.1| Uncharacterized signaling protein CC_0091 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1053 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 141/602 (23%), Positives = 264/602 (43%), Gaps = 18/602 (2%) Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 + + A ++ + L + E + S + + Sbjct: 452 GTTPSWAVLSARRLNFQGRDAVLTAFTPINKLKV------MEQRLELWAKVFEASSESII 505 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D R ++ G G +++ D T+ + Sbjct: 506 IMDEARKIISVNQAFCRSTGYDFYEALGQDLSFVMNT-PQD-----TVWADLEDQNDWQG 559 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 + F + D W+++ S ++G+++ YIGI+ DIT++K E I A D LT Sbjct: 560 EVHFCKQNGDTYPAWLMVSSVHKSATSGEVVNYIGISIDITDRKAKEERIRFLAQHDVLT 619 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 +PNR RL + + + V+ ID+D++K IND LG +GD +L ++ RR+ Sbjct: 620 ELPNRALCQQRLGEAIASA-RHTGEKVAVLFIDLDRFKLINDTLGHHIGDGLLRTVARRL 678 Query: 600 GELLKFPDILARLSGNRFGIILISENN-SLKIADFAIAMRKSIAMPINLLEREITVTASI 658 ++ D ++RL G+ F IIL + A + +I + +TV+ S+ Sbjct: 679 SSAVRSDDTVSRLGGDEFVIILRHVTDLPELTAMVNDRLIPTIRQTATVDGHVLTVSCSV 738 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVE 716 G A + E+++ A+ AMY AK G + F + + R ++ L A+ Sbjct: 739 GVALYPEDATDQDELMRRADAAMYEAKSAGRDTARFFSPETDQRVLARQSMETQLRQALA 798 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 N E L Y P + ++ G EAL++W +P G + EF+ +AEE +IK I ++L Sbjct: 799 NEEFSLHYQPRLNARTRKVQGAEALLRWKNPLLGQVPPGEFIHVAEESGLIKPIGAWVLR 858 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 R+ +S +Q + + +N++ L D EL + + A++ T P++++L +ES Sbjct: 859 EACRNWMSMEEQGICKGLELSVNLSVAQLADPELVDQLSAVLRDTRMPPAQLELELTESH 918 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 +M NP ++ + L+ +G+ + +DDFGT S L+YL D +K + S + G Sbjct: 919 LMDNPVAAQQQVAALKALGVKVAIDDFGTGYSSLAYLKRFDIDKLKVDQSFVLGMLEDSA 978 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 AI+ ++I + + ++A+ + + LT +GCD +Q + P+ + L+ Sbjct: 979 DAAIVHAVIALGHTLGLKVVAEGVENLPTAQTLTALGCDELQGYCFSRPIPLAEWVAYLR 1038 Query: 955 ER 956 Sbjct: 1039 SH 1040 >gi|228949021|ref|ZP_04111294.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810777|gb|EEM57125.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 909 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 182/870 (20%), Positives = 356/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ + Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160 Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274 T + +V L Y D FL +NL L + L S+L+++ Y Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392 ++ I + I IGL + + L + L+L + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ + I Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+IS EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDISPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R C Y+Q + + PL +K L++ Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|144897382|emb|CAM74246.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 690 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 137/557 (24%), Positives = 260/557 (46%), Gaps = 11/557 (1%) Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 ER LA G+ + D P + + G A + G ++ IND Sbjct: 136 EERLRLAATVYENVGEAIIVTDTDDVVHAINPAFSRMTGFAVDQVVGLKSKFIAD-EIND 194 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 N D R E R ++ + + + NG++ ++ +A+D+T Sbjct: 195 PKNVSEAWD--FARRGETWHGELWGRRSNGDVFPASVALTGVQGENGEVGSFVMVASDVT 252 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 +K + I +A D LT + NR + ++ L + + ++ R ++ +D++ +K +N Sbjct: 253 RRKMDEQRIRFHARHDALTKLANRHTVMEALGDAIVRA-ENEGNRLALLFLDVNHFKDVN 311 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G A GD++L + RR+ ++ DI+ RL G+ F + L S ++ + + Sbjct: 312 DSFGHAAGDELLKQVARRLKGCVRASDIIGRLGGDEFVVALPSITDAQGALACVEKVLYA 371 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSS 699 + P +L E+E+ + SIG A + + +L +A+ AMYHAK G + Sbjct: 372 FSEPFSLPEQELYASTSIGVALYPDHADCAETLLSHADAAMYHAKAGGNAYRFYDSDMDR 431 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++RV ++ DL A+ + L Y P I + ++V EALI+W HP GN+S + F+ Sbjct: 432 QAAERVNLENDLRHALAEGQFRLNYQPKIDGISRKVVAAEALIRWKHPTRGNVSPALFIP 491 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AE +I AI + L+ R + W D I +N++ D L + ++ +S Sbjct: 492 VAERAGLIGAIGDWALQEACRQMRLWLDDGIEFGC-ISVNLSPAQFHDASLKQKVERSLS 550 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 + SPS ++L +E+++ +R+ ++G L ++G+ +++DDFGT S L+YL P + Sbjct: 551 QWGLSPSLLELEITETMMATEVDRAIAIVGELGQMGVRMSIDDFGTGYSSLAYLKLFPVN 610 Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + + + R AI+ SI +A N+ +IA+ + + L G +Q Sbjct: 611 VLKIDRAFIKELPGNRKDGAIVSSIATLAANLGFEVIAEGVETQAQAGFLLTKGVTLMQG 670 Query: 938 SHVASPLGFNSILKLLK 954 + + + +L++ Sbjct: 671 FLFSPAVPPDEFAQLVR 687 Score = 86.9 bits (214), Expect = 2e-14, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 7/132 (5%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLP--YIHINDRD 462 + + + ++ + +A I G + ++ + + Y+H DRD Sbjct: 17 QYRSLFENAVEGIYRTTPSGRYLNANQALARIYGYDSPKALIEGLTDIAHGLYVHPEDRD 76 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 F+ + + +E +V + W+ R + + +G+ + Y G DITE+ Sbjct: 77 RFK----RLLDHESVVRNFEAQVYRKTGEIIWIAENARLVRDDDGNAVCYEGTVQDITER 132 Query: 523 KKSLEGILCNAF 534 K + E + A Sbjct: 133 KLTEERLRLAAT 144 >gi|299134124|ref|ZP_07027317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] gi|298590871|gb|EFI51073.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] Length = 958 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 138/607 (22%), Positives = 270/607 (44%), Gaps = 26/607 (4%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 A RL N +++ F+ I A + + R A+ Sbjct: 351 ASEARLPNGRWLRVSRSMTQERGVIVVFSDIT---ALKMQEEQLHETNRRLDAALENMSQ 407 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMH-GPIRNWLPYIHINDRDNFRTILDSFVGYR 475 + +D I + GS+H G + + + ++ + + R Sbjct: 408 GLCLYDKDARLQVVNRRFCEIFNIPVGSVHAGMSFESVLMLSVMAGNHAGQNVSDLLAER 467 Query: 476 RGRLQYE----FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + L E + + +D++ + R S+G ++ D+TEQ+++ I Sbjct: 468 QRFLSREKIDSYYQQLSDDRVICVRHR----PASDG---GWLTTCEDVTEQRQAESKITF 520 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 A D LT +PNR +R+ + ++ +D+D +K++ND LG AVGD++ Sbjct: 521 MARHDALTRLPNRVLLAERIEQAIAQVGRGSG--FAILCLDLDNFKQVNDTLGHAVGDEL 578 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 L ++ R+G ++ D +ARL G+ F II A A + + + P + Sbjct: 579 LCAVADRLGSCVREIDTVARLGGDEFAIIQADTQRPEDAARLARRIVECLGEPYEFDGQR 638 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 I + S+G + + ++LKNA++A+Y AK G F R ++ Sbjct: 639 IVIGCSVGISLSPGDGTSGEKLLKNADVALYRAKAEGRGIWRFFETEMDESLQKRRALEL 698 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 DL A++ + L Y P+ + +++ G EAL++W HP G ++ +F+ +AEE+ +I Sbjct: 699 DLREAMDKKQFELFYQPLYDIDLDKVCGFEALLRWRHPVHGVVTPEQFISVAEEIGLIIP 758 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 + +++++ R+ W D + + +N++S L E + ++ + P R++ Sbjct: 759 LGEWVIQQACREAALWPD-----DLKVAVNVSSVQFRSPRLLEAFSSALASSKLPPKRLE 813 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ESV++ N + L +LR +G+ + LDDFGT S LSYL PFD +K + S + Sbjct: 814 LEITESVLLTNNGETTETLHKLRALGLRIALDDFGTGYSSLSYLRSFPFDKLKIDQSFVR 873 Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 T E I+R+I+ + K++ A+ + + + GC+ +Q + P+ + Sbjct: 874 DLTDAEGSRVIIRAIVSLGKSLGMRTTAEGVQNIAQLNYIAAEGCNEVQGYFFSKPVAAS 933 Query: 948 SILKLLK 954 + +++ Sbjct: 934 EVPSVIR 940 >gi|52140259|ref|YP_086570.1| sensory box/GGDEF family protein [Bacillus cereus E33L] gi|51973728|gb|AAU15278.1| sensory box/GGDEF family protein [Bacillus cereus E33L] Length = 909 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 168/870 (19%), Positives = 348/870 (40%), Gaps = 34/870 (3%) Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161 ++ + + F L + + R+ D F ++P F Sbjct: 52 SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106 Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219 + L I Y+ N L + +I + A F +Y++ ++ I Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160 Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274 + + + + L L+ + + ++ + L+ Y + Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 220 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 + + T + + + ++ + + + Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQVLLTPRLGESIRLSLPYISV 280 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 ++ I + + M + + +++ L+ + Q L Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340 Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 T + ++ + + D ++ D+ + + T+LG + + Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + I+ D + + E R + +++ + P+ + I Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE K+ E I A++D LT + NR++F + + S VM Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K IND LG VGD +L+++ +R+ + LARL+G+ F I++ + N Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMTTPNMKLARLAGDEFTILIENYNKRPD 574 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + +++ P + + + ++ SIG A + + +L++A++AMY AK+RG Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634 Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + ++ I++DL LA+ N E YLVY P I + ++I+G EAL++W HP Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+I EF+ I EE + + ++L+ R + W + I +N+++K+ Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + L E + +++ P + L +E + M + + + L L +L++ GI ++DDFGT Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813 Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P DT+K + AI+ +I+ +A + +++A+ I E +K Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L R C Y+Q + + PL +K L++ Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903 >gi|117165116|emb|CAJ88670.1| conserved hypothetical protein [Streptomyces ambofaciens ATCC 23877] Length = 714 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 138/576 (23%), Positives = 260/576 (45%), Gaps = 19/576 (3%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448 + A G ++ + + R G+ + D+ + + + + G+A + G Sbjct: 138 LKAQGVVAEALHASEARFRAVFEGAAIGIGIADLDGNVLQVNGALMRMFGIADPRLRGRN 197 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +R W H +D + D V R E D W + + + +++G Sbjct: 198 VREWS---HPDDAPQTWRLYDELVRGEREAYHLEKAFYRPDGTVLWTNLTVSLLRDADGS 254 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + D TE++ + A D LTG+PNR F +RL L+ R + Sbjct: 255 PQYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRSFFFERLEKALN---AGPGQRYGL 311 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNS 627 +D+D +K +ND LG A GD +LV + R+ +++ARL G+ F + + Sbjct: 312 CYLDLDGFKTVNDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDTP 371 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ + A + ++ PI++ RE+TV SIG + + + +E+L++A++ MY AK Sbjct: 372 REVDELAGRIMNALLAPISVDGRELTVRGSIGIVEGPAGERSPAEVLRSADITMYRAKSA 431 Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GGN E + + L A+E E ++ Y P++ L D + G EAL++W Sbjct: 432 GGNRYELADPEADARVITRHGLTTALPAALERGEFFIEYQPLVHLGDGSVHGAEALVRWL 491 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIA 801 HP+ G + F+ +AE +I + ++LE+ R WR++ P+ I +N++ Sbjct: 492 HPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEQSVRQARVWRERYGESTAAGPLRINVNLS 551 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 L L + ++ +T +P + L +ES ++G + L RL ++G+ + LD Sbjct: 552 PCQLTHPGLVQDTVDILERTGVAPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALD 611 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAK 916 DFGT S L+ L +P +K + S + I+ I+ +A +++ T+ + Sbjct: 612 DFGTGYSNLANLRRLPVSVLKLDRSFTQSMQRFPADPVDLKIVEGIVALAHSLDLTVTVE 671 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + ++L +GCD Q + A P + +L Sbjct: 672 GVETGAQAEQLRILGCDTAQGWYYARPGPPERLHEL 707 >gi|229082562|ref|ZP_04215025.1| Sensory box protein [Bacillus cereus Rock4-2] gi|228700994|gb|EEL53517.1| Sensory box protein [Bacillus cereus Rock4-2] Length = 835 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 173/814 (21%), Positives = 344/814 (42%), Gaps = 36/814 (4%) Query: 170 LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL 229 LP + + + + F + + +++ V + Y + + ++ Sbjct: 28 LPSLSIHKQVIFSYKALPFFIIQYVLLFVGFAIKFIK--IYSIKGLAQFSFDSIFIVIMN 85 Query: 230 GYISIDFGFLSKLV--NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287 Y ++ F +LI ++ + ++I + + A + T Sbjct: 86 IYFTLTFILDLSSFRMLTKETWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTI 145 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-----------GYER 336 + LF ++F I ASI+L I+Y K ++ Sbjct: 146 ILVYGYIHLFQLNFGMKTSPEFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDY 205 Query: 337 AVLLIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 ++P + I + L + + + Q + +++ Sbjct: 206 VRFILPYFSTIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLT 265 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 Q + + +R D V+ ++ + ++ + Sbjct: 266 TQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCE 323 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + + +I D + + L R L E R + + ++++ I + P N Sbjct: 324 VASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-IN 380 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 +++ GIA DIT + + + AF D LTG+PNR+ F L IL+ + T+ N Sbjct: 381 KEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DV 439 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L + Sbjct: 440 AVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYS 499 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A + + P + E+++T SIG A + +E++KNA++AMY AK Sbjct: 500 EKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKA 559 Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N F +++ ++ +L A++ +E +L Y P + ++I+G EALI+W Sbjct: 560 NGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRW 619 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HPK G +S ++F+ +AEE I + ++L + W +Q + + +N++ Sbjct: 620 KHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQ 678 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 +L + ++ +T P + + +ES+ + + L +L+ +GI +++DDFG Sbjct: 679 FNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFG 738 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL P +T+K + G + AI+ SII ++K + +IA+ + E Sbjct: 739 TGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKELNLEVIAEGVETEE 798 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + K L + CD+IQ ++ P+ + LL ++ Sbjct: 799 EWKFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 832 >gi|118476310|ref|YP_893461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] gi|118415535|gb|ABK83954.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] Length = 569 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 140/566 (24%), Positives = 256/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 362 ISPGEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 KSMGCDYVQGFYYAKPLSAAELKEKL 565 >gi|323488713|ref|ZP_08093954.1| sensory box protein [Planococcus donghaensis MPA1U2] gi|323397592|gb|EGA90397.1| sensory box protein [Planococcus donghaensis MPA1U2] Length = 700 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 138/570 (24%), Positives = 262/570 (45%), Gaps = 12/570 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + F + + A + + ER + D ++ +D+ + + P I G Sbjct: 129 VLFGTVIDITAEVTANLKLKEKEERLDSLFTYNPDAIFTFDMEGNFQSANPGCEIISGYT 188 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + ++ P+I D + + E + D + +++ P Sbjct: 189 TEEILQ--LSFTPFIVSEDLPKAFFHFHNALNGNASTY--EISMIRKDGETRTLLVTNFP 244 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 M S G+I+ G+A DIT + + + + F D+LT +PNR F D + ++ + Sbjct: 245 MK-SGGNIVGAYGMAKDITVETEYKKLMEGMGFFDSLTHLPNRTLFEDHVKQAIESKDRN 303 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + V+ +++D++K IND G GD+ L + R+ E + + R +G+ F ++L Sbjct: 304 EK-DLAVLFLNLDRFKLINDSFGHQFGDEFLKDIAHRLSENIDANCTVGRFAGDEFAVLL 362 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 ++ A +A P L +++TASIG A + + + ++K A+ AM Sbjct: 363 QGL-EQYQVFQLAERFNDVLAKPFEALGHSVSITASIGIAFSSEANESVDRLIKKADSAM 421 Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 + K + + R+ I+ +L A+ N E+ L Y PII L + + +E Sbjct: 422 NYTKKHKIAQYTVYSEELDQQSAYRLTIERELKSALTNQEMTLHYQPIIDLKNNRLSAME 481 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W+HP+ G I F+ I+EE I + ++L +W+DQ PPI I +N Sbjct: 482 ALIRWNHPELGFIPPDFFIPISEETGQIVPLGRWVLYTACAQNKAWQDQ-GHPPIKICVN 540 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 I++ L + E + ++ +T + ++L +ES+++ + + + L +L+K+G+S++ Sbjct: 541 ISTIQLQQLDFVETVIEILEETGLNAQWLELEVTESILLVDTKLLKSSLHQLKKLGVSMS 600 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917 +DDFGT + LSYL FD +K + S + + AI +II +A + T++A+ Sbjct: 601 IDDFGTGFTSLSYLRQFSFDRIKIDRSFVGDISNDLNGKAITATIISLAHALNMTVVAEG 660 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I + L CD Q + PL Sbjct: 661 IEDSTQLTFLQGENCDEGQGYYFGRPLSAE 690 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 2/100 (2%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 ++G + IH D + + + + +Y R+ + Sbjct: 49 YVNEHFCKLVGYEEKEILNGSITLEDLIHPEDFSVIQKRIFTEYDSKDAFARYRVRIYRS 108 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 D Q + I ++L G DIT + + Sbjct: 109 DGQLLHVEIHSTKKKWQGKNVLF--GTVIDITAEVTANLK 146 >gi|163750165|ref|ZP_02157407.1| sensory box protein [Shewanella benthica KT99] gi|161330021|gb|EDQ01005.1| sensory box protein [Shewanella benthica KT99] Length = 1432 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 135/563 (23%), Positives = 265/563 (47%), Gaps = 19/563 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V + G N+ ++ Sbjct: 879 HAEEQLRLFERAIANISEGMFILDSEFRFVEVNEACCELCLKPKDKFIGEQFNF--DLYP 936 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + ++ + + + + GR + D M + + + + G + Y+G+ +D Sbjct: 937 D---SYSEQIRTILNQQ-GRWSNDVESAKGDGSSFLMELTVDAIYDEQGQLTHYVGVFSD 992 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LT +PNR S + L ++ + T+MV+D+D +KK Sbjct: 993 ISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1047 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD++L+ + RRI + + + RL G+ F I++ + A A ++ Sbjct: 1048 INDSLGHQVGDELLIKVARRIEAAVPYHTSIYRLGGDEFAILVDDNPDIGSSAVIANSVI 1107 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++ P L ++ V SIG + +L+ A++AMYHAK GGN + + S Sbjct: 1108 EAFVTPFELTSDKVVVGMSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1167 Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ + + A++ + Y P I L ++ G+EAL++ +HP+ G I +E Sbjct: 1168 LNRNAIRQLEVENLIRQAIKEDLFEVYYQPKIDLKSGKMTGMEALVRLNHPEQGLIPPNE 1227 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I ++++ WR Q + +N++S +L + +++ Sbjct: 1228 FIPLAEENGLIVEIGDIVMKKACFAAQKWRSQGIFNG-RVAVNLSSYQFALPDLQQRIES 1286 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE++ ++ +L K+G++L LDDFGT S LSYL Sbjct: 1287 ILRLTQLPAANLELEITEGTVIKEPEKAIKVMQQLSKMGVTLALDDFGTGYSSLSYLKRF 1346 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++++ + + L + C+ Sbjct: 1347 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVSEGVEDASQLSILKALNCEE 1406 Query: 935 IQDSHVASPLGFNSILKLLKERF 957 IQ + P+ KLL + F Sbjct: 1407 IQGFIFSKPVTEAEFTKLLHKEF 1429 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 3/169 (1%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + + A +L ++I +++ +L + I ER L++ GSGD +WDWD Sbjct: 719 PWWLSKQAEFIYFML-SLIISAVIVKTILRRREVQKQIAKSEERLKLSLWGSGDEMWDWD 777 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I ++ + + L IH D+ T L+ + + Sbjct: 778 IETGQIYRSNIWGS-LDFPRDGQRAGETGEKSNIHPMDQKRVSTALNDHFSGKSDHFEAA 836 Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 +RV+ + W++ R + + + + LR G +I K + E + Sbjct: 837 YRVKGKSGDWVWILDRAKIVERDEKDNPLRMTGTIKNINNFKHAEEQLR 885 >gi|229181597|ref|ZP_04308922.1| Sensory box protein [Bacillus cereus 172560W] gi|228601793|gb|EEK59289.1| Sensory box protein [Bacillus cereus 172560W] Length = 735 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 167/734 (22%), Positives = 322/734 (43%), Gaps = 32/734 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + A + T + LF ++F Sbjct: 6 TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSP 65 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351 I ASI+L I+Y K ++ ++P + +I + Sbjct: 66 EFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDYVRFILPYFSIIITFSFIIIQ 125 Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 L + + + Q + +++ Q + + +R Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLTTQLEDEVEEGAFALSKSEQR 185 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + L +I D + + Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLLHFIDSKDHELLKK 243 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++++ I + P N +++ GIA DIT + Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L IL+ + T+ N V+ +D+D++KKIND LG Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ DI+AR G+ F I+L + A + + P Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + E+++T SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 420 IQGEELSITPSIGIAMYPDYGTNVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E + K L + CD+IQ ++ Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWKFLHKQNCDHIQGFFISK 718 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 719 PVSSKDVWMLLHKK 732 >gi|21219447|ref|NP_625226.1| hypothetical protein SCO0928 [Streptomyces coelicolor A3(2)] gi|6580642|emb|CAB63177.1| conserved hypothetical protein SCM10.16c [Streptomyces coelicolor A3(2)] Length = 714 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 138/625 (22%), Positives = 272/625 (43%), Gaps = 22/625 (3%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH-----VLATGYFSQG 399 + ++ G R + +Q A+ G + + + A G ++ Sbjct: 88 AYLVLYCGGDGDPEDLRARSARLQHAMAAGFAGALRARTLAEQEAIAQAALKAQGVVAEA 147 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + R G+ + D+ + + + + G+A ++ G + H + Sbjct: 148 LHASEARFRAVFEGAAIGIGIADLDGNVLQVNEALMRMFGIADPTLGGRRAT--EWTHPD 205 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D + + V R E D W + + + +++G + + D Sbjct: 206 DAPQTWRLYEELVRGEREHYHVEKAFYRPDGTVLWTNLTVSLLRDADGTPQYQLALMEDT 265 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE++ + A D LTG+PNR F +RL L+ R + +D+D +K + Sbjct: 266 TERRLLNLRLRYEATHDALTGLPNRSFFFERLEKALN---AGPGQRFGLCYLDLDGFKTV 322 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 ND LG A GD +LV + R+ +++ARL G+ F + + ++ + A + Sbjct: 323 NDSLGHAAGDRLLVEVADRLQACATAPGEMVARLGGDEFVALTTGPDTRREVDELAGRIM 382 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++ P+++ RE+TV SIG + + + +E+L++A++ MY AK GGN E Sbjct: 383 NALLAPVSVDGRELTVRGSIGIVEGPAGERSPAEVLRSADITMYRAKSAGGNRFELADPE 442 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + L A+E E ++ Y P++ L D + G EAL++W HP+ G + Sbjct: 443 ADARVITRHGLTTALPAALERGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLGPDR 502 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIASKDLLDNELCE 812 F+ +AE +I + ++LE+ R WR++ P+ I +N++ L L + Sbjct: 503 FIPLAEHTGLIVPLGRWVLEQSVRQARVWRERYGESGAAGPLRINVNLSPCQLTHPGLVQ 562 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ +T +P + L +ES ++G + L RL ++G+ + LDDFGT S L+ Sbjct: 563 DTVEILERTGVAPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDDFGTGYSNLAN 622 Query: 873 LGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L +P +K + S + I+ I+ +A +++ + + + ++L Sbjct: 623 LRRLPVSVLKLDRSFTQSMQQFPADPVDLKIVEGIVALAHSLDLAVTVEGVETGAQAEQL 682 Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952 +GCD Q + A P + + +L Sbjct: 683 RILGCDTAQGWYYARPGPPDRLHEL 707 >gi|154248534|ref|YP_001419492.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Xanthobacter autotrophicus Py2] gi|154162619|gb|ABS69835.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Xanthobacter autotrophicus Py2] Length = 758 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 132/558 (23%), Positives = 230/558 (41%), Gaps = 17/558 (3%) Query: 402 SDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIH 457 LA + D + D+ P + I G + G R H Sbjct: 192 QSERHLRLAAAVFASAHDGLVVTDLNAVVSAVNPAFSQITGYCEAEILGRSMRTMHSGRH 251 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DR+ +R + + G E R + + + IR + + G Y+G Sbjct: 252 --DREFYRGMWGALTS--TGSWHGEIWNRRKNGEIFLQQLSIRTVFDEKGKPQNYVGAFQ 307 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT K S + A D LT +PNR L + + V+ +DID++K Sbjct: 308 DITRIKHSEFELDRIAHYDPLTDLPNRTLLASLLDLAVSRA----GKTCAVLFLDIDRFK 363 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG GD VL + RI L L + F +IL A A + Sbjct: 364 TVNDSLGHIAGDAVLKAAADRIRAALDADATLGHYGADEFVVILEEIEGPQDAALAASRL 423 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +A P + EI + AS+G + ++++L++A A+ AK +G + Sbjct: 424 IDELARPFTINGGEIYLGASVGISLHPLDADDAAQLLQHANTALAEAKAQGRGIYSFYTQ 483 Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + R+ ++ DL + E L + P++ L + I G EAL++W P G + + Sbjct: 484 ALTRSARVRMEMEADLRRGLVREEFRLNFQPVVDLANGRIAGAEALVRWQSPVHGLVLPN 543 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I+ + ++LE + + W FI +N++ + LCE ++ Sbjct: 544 RFIPLAEETGLIEPLGDWVLEEACQQMAKWTAAGADLD-FIAVNLSPRQFQRGTLCERIE 602 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T +R+++ +E+V+ G + L +R G+ + LDDFGT S L+YL Sbjct: 603 EVLRRTGLPAARLEVEITENVLFGAVA-AERKLRDMRDSGVRIALDDFGTGYSSLAYLKR 661 Query: 876 IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + I +II +A+ + ++A+ I L GC + Sbjct: 662 FPISKLKIDRSFVHDLPRAADAEIATAIISIARALGLDVVAEGIEAPEQCAFLKERGCGF 721 Query: 935 IQDSHVASPLGFNSILKL 952 Q P+ L+L Sbjct: 722 GQGYLFGRPVTSERFLRL 739 Score = 97.3 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 9/157 (5%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A+ S + ER LA GS V+D + + +P ILG+A + R Sbjct: 62 ASSGDSMALRESEERFDLAARGSDQGVFDIHV-GRSLYLSPRARDILGIAPKAPVDIRRT 120 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + DR + V + + R+ D + R + +G + R Sbjct: 121 FRQMLRGADRRKVAAVRKDLVRGGSD-VDLDIRISRPDGASRDVRWRGLATRDGDGAVTR 179 Query: 512 YIGIANDITEQKKSLEGILCNA-----FQDNL--TGI 541 +G+ D+T QK+S + A D L T + Sbjct: 180 VVGMITDVTAQKQSERHLRLAAAVFASAHDGLVVTDL 216 >gi|300864370|ref|ZP_07109242.1| PAS fold family [Oscillatoria sp. PCC 6506] gi|300337596|emb|CBN54388.1| PAS fold family [Oscillatoria sp. PCC 6506] Length = 948 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 159/656 (24%), Positives = 287/656 (43%), Gaps = 89/656 (13%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGS 444 V + V + + E+ + + ++ ++ P +A I G + Sbjct: 292 VARDVTKYKRTEEALRQAEEKYRSIFENAVEGIFQTLPNGRYISANPALARIYGYNDAAE 351 Query: 445 MHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + + N R F + + + +E +V +D Q W+ R + Sbjct: 352 LIDKLTANAQLYVDPNRRAEFTGQMQLYDRVSK----FESQVYRSDGQPIWVSESARAVR 407 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 NG++L Y GI DITE+K+ + +L NAF D LTG+PNR F++R++ + L+ + Sbjct: 408 GKNGELLYYEGIVEDITERKRVEDELLHNAFHDALTGLPNRLMFMERVSLAIKLAKKQSD 467 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD---------------- 607 R V+ +D+D++K IND LG VGD +L++ +R+ ++ Sbjct: 468 YRFAVLFLDLDRFKVINDSLGHMVGDQLLIAFAQRLQGVVWESQQLENDEQVVAIDASSA 527 Query: 608 ------------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 +ARL G+ F I++ + + A + K +++P NL EI T Sbjct: 528 SSASSAIAGVSFTIARLGGDEFTILVEGIQDVSGATEIADRIHKQLSLPFNLNGLEIFTT 587 Query: 656 ASIGFASWTSSKI---------------------------------------------TS 670 SIG ++ Sbjct: 588 TSIGIVLNWDLGDVKGGAQTLQLWTGGGTQSLQCKTEQHCEDVCNFSPIRHSQFPIRHSA 647 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPII 728 ++L++A++AMY AK RG F + + R+ ++ DL A+ E + Y PI+ Sbjct: 648 EDLLRDADIAMYQAKARGKARSAVFDQAMYAGAVARLQLETDLRRAISAQEFQVYYQPIV 707 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 L + I G EAL++W HP G +S S F+ +AEE +I + ++L R + +W+ Q Sbjct: 708 CLANGRISGFEALVRWQHPHRGLVSPSSFIPLAEETGLIIPLGSWVLWEATRQMRAWQLQ 767 Query: 789 A-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + PPI I +N++ + +L + + ++ +T S +KL +ESV+ +R + Sbjct: 768 FQSNPPIAISVNLSGQQFSQPDLIDKFKQILQETGLEGSSLKLEITESVITEGAGNARTI 827 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA-------ILR 900 L RLR + I L +DDFGT S LS L + P +T+K + S ++ + A I++ Sbjct: 828 LKRLRDLNIQLCIDDFGTGYSSLSRLHHFPINTLKIDRSFVSRMGKTGRARSSGLGEIVQ 887 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +I+ +A N+ IA+ + + +L C+Y Q + PL + +L + Sbjct: 888 TIVMLAHNLGMDAIAEGVETAEQLAQLKLYNCEYGQGYFFSKPLTSIAATAMLAAQ 943 Score = 39.9 bits (92), Expect = 2.3, Method: Composition-based stats. Identities = 57/463 (12%), Positives = 127/463 (27%), Gaps = 82/463 (17%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ----GIFSDGERQSLAVLGSGDIV 418 + G L ++ ++ F ++Q + + + E+ + + Sbjct: 26 PSSRWLRLGGGSLAVLAGILVFVLVQAPARSREAVERATVALLLANEQLQAILEAVP-GM 84 Query: 419 WDWDIVRDRVT--TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W I D +AT L+ G +L + F ++ F Sbjct: 85 VSW-ISSDLHYLGVNRHLATACKLSPEDFQGKEIGFLNG-----NNEFTELVRQFFTRSD 138 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL------ 530 E R+ A ++ I +GI DITE+K + E + Sbjct: 139 REAVSEVRLEANGITRIYL---IVAQKYDRDRAAFTVGI--DITERKMAEEQLRASEAEL 193 Query: 531 ---CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN--LRPTVMVIDIDKYKKINDVLGI 585 A D +T DRL L +++T+ + +P ++ + +++VL Sbjct: 194 KALFAAMTDIIT-------VRDRLGRCLKIASTNPSLLYQPASELLG----QTLHEVLDR 242 Query: 586 AVGDDVLVSLTRRIG---------------ELLKFPDILARLSGNRFGIILISENNSLKI 630 D L + + + F ++ + + ++ + Sbjct: 243 ETADTFLAYIHHALEIQQTVQFEYSLPIDNADMWFAVTVSPILNDSVLLVARDVTKYKRT 302 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFAS-----------WTSSKITSSEMLKNAEL 679 + + I T G + + ++ NA+L Sbjct: 303 EEALRQAEEKYRSIFENAVEGIFQTLPNGRYISANPALARIYGYNDAAELIDKLTANAQL 362 Query: 680 A------------MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 M + +R + +N EL + Sbjct: 363 YVDPNRRAEFTGQMQLYDRVSKFESQVYRSDGQPIWVSESARAVR--GKNGELLYYEGIV 420 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 + + + V E L H + + + E + + + Sbjct: 421 EDITERKRVEDELLHNAFHDALTGLPNRLMFM--ERVSLAIKL 461 >gi|126660962|ref|ZP_01732050.1| hypothetical protein CY0110_06504 [Cyanothece sp. CCY0110] gi|126617740|gb|EAZ88521.1| hypothetical protein CY0110_06504 [Cyanothece sp. CCY0110] Length = 721 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 145/585 (24%), Positives = 283/585 (48%), Gaps = 9/585 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L + Q ++ + +R + + DI+ +P + Sbjct: 135 LEEFTLRRQQQQALIERQKVEIALRESEQRFRALIENAIDIILIVSSEGTFTYLSPSVKR 194 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQFHWM 495 +LG S+ G ++ IH D+ R +S + + + EFRV + DN++ + Sbjct: 195 VLGYDPASLIG--CSFFDLIHQADQQRIRQSFESIKIEANQSTILSEFRVCSHDNRWLML 252 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + + + + ++ +DITE+ + + + +A+ D LTG+ NR + L++L + Sbjct: 253 EAIAKNLED-DPAVAGFVINCHDITERHYTAQQLRYDAYHDKLTGLANRSALLEQLQKAI 311 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D + ++ +D+D++K IND LG +GD++L ++ +R+ + + D LAR G+ Sbjct: 312 DRNKRRRQDHFAILFLDLDRFKVINDSLGHLMGDELLKNMAQRLEQCHRDGDTLARFGGD 371 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +L + A + + + P L RE+ ++ASIG T +ML+ Sbjct: 372 EFVFLLQDIREPEEAVIVAQRIHEVLKAPFTLNNREVFISASIGITISTDHYDHPEQMLR 431 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A+ AMY AK G E F + + + ++ DL A++ EL + Y PI+ L + Sbjct: 432 DADAAMYRAKANGKACHEIFAPTMYLSALKELHLESDLRQAIQRQELVVYYQPIVFLKTQ 491 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMP 792 +I+G EAL++W P I ++F+ +AEE +I ++ ++L+ + + W+ + Sbjct: 492 QIIGAEALVRWQPPGKSLIPPNDFIPLAEETGLIINLDRWVLQCACQQLYEWQQDFQGLA 551 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 P FI +N++ K D L + + ++ KT +KL +E+V + N LL +L+ Sbjct: 552 PHFISVNLSPKQFFDPRLKDIIIEIVGKTGLDKKYLKLEITETVFLKNSHTVLNLLYQLQ 611 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910 ++ I + LDDFGT S LSYL P +++K + + + AI+R + +A+ ++ Sbjct: 612 QLNIQICLDDFGTGYSSLSYLHRFPLNSLKIDRGFINDLGQTNQNDAIVRIVGTLAQELQ 671 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ I I+ LT +G + Q + + P+ + LL++ Sbjct: 672 LELIAEGIEESYQIEALTTLGYQWGQGYYFSPPIDAQAFSLLLEK 716 >gi|330830935|ref|YP_004393887.1| GGDEF/EAL domain-containing protein [Aeromonas veronii B565] gi|328806071|gb|AEB51270.1| GGDEF/EAL domain protein [Aeromonas veronii B565] Length = 814 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 130/576 (22%), Positives = 259/576 (44%), Gaps = 13/576 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 V+ + + ER A + + + D ++ P + + + Sbjct: 243 RVMGVIHNATARRRQEERLHQANVVFDTTAEGIIILDSEHHILSVNPAFTMLTQYNAEEV 302 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + +H + + E D + +I + ++ Sbjct: 303 IGRTPDI--IMHPRRYTDLDYPWY-HLRPGNNAWHGEMVCLRKDGSYFSSWQQISAVYDN 359 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + Y+ +DI+ +K + A+ D LT + NR +RL L + + R Sbjct: 360 FNNTTHYVIALSDISAIRKVEAELNHLAYHDPLTELGNRHLLQERLALELKTAQLNRK-R 418 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 ++ ID+D +K IND LG VGD++L L RI L+ D+ RL G+ F +++ Sbjct: 419 LGLLFIDLDGFKLINDSLGHGVGDELLKRLAERIRGCLQHNDLATRLGGDEFLVLIPYLE 478 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++A A + + P+ L + ++ASIG A + + ++ A+ AMY AK Sbjct: 479 EPDELATLANTLLTVLREPVELAHELVAISASIGIAIYPDHADSPETLVSAADSAMYEAK 538 Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G N + + +++ +R+ I++ L A+E +L + Y P+ L + + GLEAL++ Sbjct: 539 SQGRNGFQFYTPCMAARARERMQIEQGLLKALELEQLCIFYQPMTNLANGHLSGLEALLR 598 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G I+ + F+ +AEE +I+ I +++ +W P + +N++ + Sbjct: 599 WQHPNEGMIAPTRFIPVAEECGLIEKIGEWVMRNACEQGQNWLAAGLPVP-RLSVNVSVR 657 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 ++ E + A++++T + P R+++ +ES ++ E+S L RL+ +G+ + +DDF Sbjct: 658 EMRSPGYVERVAAILAETGFPPERLEIEVTES-IIQRVEQSLDLFTRLKNLGVQIAIDDF 716 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LS L +P D +K + + + + + R+II +A +++ + A+ I + Sbjct: 717 GTGFSSLSLLKTLPIDRIKIDRAFVQALPEDKNSRELCRTIINLADSLDMEVTAEGIETQ 776 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L + C Q + PL + L +R+ Sbjct: 777 AQHAFLQSLNCGEGQGYLFSKPLHVEHMGDRLHQRY 812 Score = 74.2 bits (181), Expect = 1e-10, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 +R LA+ + VW+W + DR+ I +LG+ + HG ++ ++ Sbjct: 139 ETEQRLQLAMRAAQIGVWEWHVAEDRLLFDGQIEPLLGIEANQFHGGLQAFVDCFEPESG 198 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + L S + A N+ HW+ I + + R +G+ ++ T Sbjct: 199 SQLKAALQSH-----DPIHLTLSYLTALNERHWVDIHADHVPATESIGHRVMGVIHNATA 253 Query: 522 QKKSLEGILCNAF 534 +++ E L A Sbjct: 254 RRRQEER-LHQAN 265 Score = 44.2 bits (103), Expect = 0.12, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 6/131 (4%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + + +D +A I G + G L + Sbjct: 23 LEQLMDNAPLGIGVFDCEFRYRKVNQVLADINGKSIEEHQGKH---LREVVPKLAPTLEP 79 Query: 467 ILDSFVGYRRGRLQYEFRVRAA--DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + + + A D+ PM + G++ + I DITEQ + Sbjct: 80 MFQQIMRSGLPYVDIAITGQTAAYDSSSRRFQATYSPMRDEKGELNGILAIVRDITEQYE 139 Query: 525 SLEGILCNAFQ 535 + + L A + Sbjct: 140 TEQR-LQLAMR 149 >gi|300694165|ref|YP_003750138.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum PSI07] gi|299076202|emb|CBJ35516.1| putative signal transduction protein eal-ggdef domains [Ralstonia solanacearum PSI07] Length = 892 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 139/580 (23%), Positives = 262/580 (45%), Gaps = 11/580 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + +G+ ER LA+ + V + + IL + G + G Sbjct: 306 AIQKDTTERGLAESEERYRLAISHLNEGVLIQTLDGVVLAANTSAERILRVRPGQLVGRN 365 Query: 450 R-NWLPYI---HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 R + + + H D L + + + W + I P+ Sbjct: 366 RLDMMQRVVDEHGKDVALDVLPSKVVRQSGEPILGRVYGLLLKTGELIWTRMNIIPIRRH 425 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + DIT+ K++ + + A D LTG+ NR F+ L ++ + D++ Sbjct: 426 GDAAPSSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLEGAIERA-RDESR 484 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + +D+D++K +ND G A GD +L S R+ + + D++ARL G+ F I++ Sbjct: 485 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 544 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 +IA A + ++ P + + + SIG A + I+ +++L++A+ AMY A Sbjct: 545 VEGKRIALLAERLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGTDLLRSADAAMYRA 604 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + + + ++ L A +N EL LVY P L IVG EAL+ Sbjct: 605 KQNGRNRAQFYTAELNARLQRRYLLENALRDACDNRELQLVYQPKYDLASHRIVGAEALL 664 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+ K G +S EF+ +AEE +I I ++L R ++W + +N+++ Sbjct: 665 RWNSVKLGAVSPVEFIPVAEETGLIVPIGEWVLRRACEQAVAWYQALGY-DFRMAVNLSA 723 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ ++ +++T P+ +++ +ES++MG + R + L GI +++DD Sbjct: 724 RQFQTGDVVPMIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 783 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P VK + S + G +A+ +I+ MA+ + T+ A+ + Sbjct: 784 FGTGYSSLSYLQRFPISNVKIDRSFILGIPGDPDSVALTEAIVAMARALGMTVTAEGVED 843 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++ L + GC IQ ++ P+ +LL+ +V Sbjct: 844 ADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLAVV 883 Score = 39.2 bits (90), Expect = 3.8, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 6/113 (5%) Query: 423 IVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 + V +L + + G + IH +D L Sbjct: 33 VDGRIVQGNQAATQLLAVPVPERLLGV--ALVSLIHPDDVGQVMPSLSRVAAGSLPAEPI 90 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 E R+ AD + +++ G + + D + +LE A Sbjct: 91 EHRLVRADFTHVLVTSEAARCTHA-GQPAVML-VLRDAGSRH-ALERNAVQAR 140 >gi|121592523|ref|YP_984419.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] gi|120604603|gb|ABM40343.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax sp. JS42] Length = 1108 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 148/581 (25%), Positives = 268/581 (46%), Gaps = 15/581 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 L + + R S A+ S V DI V + + G Sbjct: 530 ALQTVADALWKHTAQRRQEAVIH---RLSEALDQSPSPVVITDIDASIVYVNKAFSEVSG 586 Query: 440 LASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + + G R + R + + R Q E R + Q + Sbjct: 587 YGAQEVLGRNPRVLQSGLTP--RTTYADMWTKL--PRGLPWQGELINRRKNGQVYTENAS 642 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + P+ + G++ Y+ DIT+++++ E I + D LTG+ N+++F ++LT +D + Sbjct: 643 LYPVRDVFGEVTHYVAHMEDITQRREAEERIRALSNYDTLTGLLNKKAFDEQLTQAIDRA 702 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + R +V+ D+D +K +N+ LG A GD++L+ + R+ L +AR SG+ F Sbjct: 703 DAS-HERVSVLWFDLDNFKLVNETLGHAAGDELLLEMGNRLRACLAPHIPVARYSGDAFT 761 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I+ + +A A + + + ++V+AS G A + T+S + AE Sbjct: 762 AIVP-LADQAAVALLAQDALAQLQTTLQIHGHAVSVSASAGIAVYPDDARTASTLASAAE 820 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY K G N + F + ++ L A EL+LV+ P L + Sbjct: 821 VAMYRVKQDGRNGLRFFAPEMQAHTQRSLELAAGLKDAAHRGELFLVFQPQRTLGSGALA 880 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP+WG +S +EF+ IAE+ I AI+ +++E++A+ + +W D A +PP+ + Sbjct: 881 GAEALLRWRHPRWGLVSPAEFIPIAEQSGSIVAIDFWVVEQVAQQLRAW-DAAGLPPLVV 939 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++ E + ++ + SP RI++ +E+V + NPE++ + RL ++G Sbjct: 940 AVNVSAAQFARPHFVEELVRILQRMDISPQRIEVELTEAVALKNPEQAETTIRRLHEVGF 999 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914 + LDDFGT S +SYL D +K + S + + AI+ +II MA ++ I Sbjct: 1000 RVALDDFGTGYSSMSYLKRYAIDKLKIDQSFVRELAHQASDQAIVTAIIKMAHSLRMATI 1059 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + L GCD +Q + PL + ++ Sbjct: 1060 AEGVETAEQAALLQACGCDEMQGYWYSRPLEPAAFEAFVRN 1100 Score = 43.8 bits (102), Expect = 0.16, Method: Composition-based stats. Identities = 38/323 (11%), Positives = 85/323 (26%), Gaps = 33/323 (10%) Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM-------VTASIARITLASIVLYYTY 324 +L +A + ++ A +L + P +T R A Y Sbjct: 139 WLGRRSRYAGLLWVALLVGAVHYVLLGHPQWLPRTFTPEAGLTPFKVRFEYALATAYVLA 198 Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384 + + + A + + + + + + N + G I+ Sbjct: 199 GVGFLTQLRH--AREFGLSHLALASFTMAMSEIFFTLYANVTDVYNVAGHFYKILAYGFL 256 Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 V + + RQ + D++++ D + + + L Sbjct: 257 YRGLFVETVQIPYLDLRAAEARQRATLNTLPDLLFEVDRKGVYLAVHANETSKLLTPLPQ 316 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMS 503 + G + + ++ R + R+ + + S Sbjct: 317 LLGKTLD--EALPP---AAAAQCFEALAEAERTGMSRGQRITLPLPLGERHFELSVSRKS 371 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL-----------DRLT 552 G ++ ++ DIT ++ E I A G+ N D L Sbjct: 372 AVAGQPDTFLMLSRDITPTVENEERIRSEA------GL-NAVLLDLQQHDIHQPEADLLR 424 Query: 553 TILDLSATDDNLRPTVMVIDIDK 575 L + T V+ D Sbjct: 425 RGLAHAQTLTGSALAVLYFVHDD 447 >gi|117618131|ref|YP_856095.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559538|gb|ABK36486.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 838 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 145/584 (24%), Positives = 262/584 (44%), Gaps = 20/584 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 +G + + + + SD + R S + + + D + + I G Sbjct: 246 LGSVLTTFSMRMVAELERLQSDAQLRLSAVAFETHEGIIITDPDFKILRVNHAFSQITGF 305 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 S + G +H+ + + R Q E + AD + + Sbjct: 306 DSQRVIG--------LHLGNDLWCGLGGLGYELGTLSRWQGETQRLHADGYPYPQWEIVT 357 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ + G+I ++ DI+E+K++ I A+ D LTG+PNR+ + L ++ Sbjct: 358 PVQDDRGEISHFVICFEDISERKEAERRIQDLAYYDELTGLPNRRQLHETLAHAFGEASR 417 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D L ++ ID+D +K IND LG A GD +L + R+ L++ D LARL G+ F ++ Sbjct: 418 DY-LIGALLFIDLDHFKTINDSLGHATGDWLLKEVASRLKRLVRQGDCLARLGGDEFVLL 476 Query: 621 LISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 L S ++ A + IA P N + + + AS+G + + ++LK Sbjct: 477 LPSLSASPPQAEMQADLIAERLISEIAAPYNHAGQVLHIGASVGITLFPGREQGVDDLLK 536 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDE 733 A+ AMY AK G F S + +L A+ EL L Y P + Sbjct: 537 QADTAMYQAKSAGRKTRRFFDASMQLQADRRLLIHNELRSALNQQELTLYYQPQHMVEGG 596 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +I+G+EALI+W P +S +EF+ IAEE +I I ++L + W + P Sbjct: 597 DIIGVEALIRWQPPGRALVSPAEFIPIAEETDLIVDIGNWVLYEACAQYVRWEENGIHIP 656 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + +N+++K + + + +++ T P+ + L +ESVV+G+ E + + L+ Sbjct: 657 -QLSVNVSAKQFHATDFVDRIHDVLASTGMDPASLNLEITESVVLGHAEDTISKMSELKA 715 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +GIS +DDFG S LSYL +P D +K + S + +AI+ ++I MA+++ Sbjct: 716 LGISFAIDDFGAGYSSLSYLKRLPADELKIDRSFIQDIPRDGDNMAIVEAVIAMARHMGF 775 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + ++ L GC + Q + PL + + ++ Sbjct: 776 NVTAEGVESRQQLEFLQAQGCHFYQGYLASKPLPVPYLERYVQR 819 >gi|213968309|ref|ZP_03396453.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] gi|213926947|gb|EEB60498.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] Length = 763 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 142/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%) Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453 ER L V+ + D + D+ V P I G + G L Sbjct: 169 SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 228 Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D ++ + + R ++ E D W+ + I P++N G + Sbjct: 229 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 284 Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545 + + DITE+K + E + AF D LT + NR Sbjct: 285 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 344 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 ++ L R TV+ +D+D +K +ND +G GD +L + R+ ++ Sbjct: 345 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 403 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D+LAR+ G+ F I+L+ ++ A + + I + ++I ++ SIG + Sbjct: 404 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 463 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723 ++L++A++AMY AK +G F S D ++I+ L A+EN + + Sbjct: 464 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 523 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI E +VG+EAL++WDHP G IS F+ IAE+L +I + +++ + D+ Sbjct: 524 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 583 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 +WR + + +N++ K+L + + +I+ T +++++ +ESV + P+ Sbjct: 584 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPSAQLQIEVTESVFLYQPDA 643 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901 +L ++R +G+ + LDDFGT S L Y+ P D VK + S ++ ++ AI+ S Sbjct: 644 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSQAIVSS 703 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ + + ++ I A+ + L +MGC Y Q + P+ ++ +++ Sbjct: 704 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 757 >gi|257094786|ref|YP_003168427.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047310|gb|ACV36498.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 708 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 152/613 (24%), Positives = 281/613 (45%), Gaps = 15/613 (2%) Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 +G ITK ++ I + + L + + LAT + Sbjct: 99 LGAADYITKPINVAIARQRISNFLEREGLRKEVEAQRDRLATLVAELERAEGELSIAAVA 158 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 S + + D + + G ++ G L +D ++ + +S Sbjct: 159 FASQNGMVITDPKGVILRVNQSFTRLTGYSAAEAIGRTPAVLKSGRHDD-PFYQRMWNSL 217 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 V +G Q E + Q + ++ I + S G Y+ +DITE K++ I Sbjct: 218 VE--KGYWQGEIWNKRKSGQIYAELLTITAIVASGGITTHYVASFSDITEDKQAEAEIHR 275 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 A+ D LT +PNR+ DRL L +A L + I +D +K +ND G VGD + Sbjct: 276 LAYYDALTRLPNRRLLQDRLGQALAAAARH-GLYGALFFIGLDNFKTLNDTRGHDVGDLL 334 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPIN 646 LV + + + ++ D +ARL G+ F ++L + + + +R++ + P + Sbjct: 335 LVEVAQCLRAQVREGDTVARLGGDEFVLLLDGVSGNADEAAAVAKEVGDKLREATSRPFS 394 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 L +E SIG + + ++ T E+ K A+LA+Y AK+ G + + F + + + Sbjct: 395 LDGQEYRCKLSIGVSLF-AALDTVEELFKRADLALYQAKNAGRDRLRFFDPAMQAAMDLR 453 Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ DL A+ +L L Y P I ++G+EAL++W HP+ G +S +EF+ +AE Sbjct: 454 GALESDLHQALALDQLRLHYQPQIDTA-GRVIGVEALLRWWHPQRGLVSPNEFVPLAEST 512 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I I ++LE I +W A + + +N++++ + E ++ + + + Sbjct: 513 GLILPIGRWILETSCVLIKNWESDACTRSLQVAVNVSARQFRQADFVEQVKRSLKASGAN 572 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P+R+KL +ESV++ N E + + ++++G++ +LDDFGT S LSYL +P D +K + Sbjct: 573 PARLKLELTESVLLKNVEDTIAKMLAIKRLGVAFSLDDFGTGYSSLSYLAQLPLDQLKID 632 Query: 885 GSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + R I R+II M + ++ +IA+ + E + L GC Q + Sbjct: 633 QSFVRKLPGARKEETIARTIITMGRELDMNVIAEGVESEAQRQFLEAHGCHAFQGYLFSR 692 Query: 943 PLGFNSILKLLKE 955 PL + L+E Sbjct: 693 PLPVEHLTVFLQE 705 >gi|186471945|ref|YP_001863263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] gi|184198254|gb|ACC76217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] Length = 980 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 139/567 (24%), Positives = 255/567 (44%), Gaps = 21/567 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453 ++ + + E ++L S D + +D R P + G + G G + + Sbjct: 414 AELVSRELESRTLI-ENSPDTITRYDRDLRRTYANPAFCSSAGRSLGEALGKRPSEIPGG 472 Query: 454 --PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 I+ R I + + G+ E R + D Q IR+ P + +G + Sbjct: 473 ANALIYE------RKIGEVIASGKSGQF--ELRWLSKDGQEQCSHIRLTPEIDPSGKVNS 524 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + D++++ I A D LT +PNRQ F +RL ++ + R +M+I Sbjct: 525 VLAVGRDLSDRMAFEAAIWQQANFDTLTQLPNRQMFQNRLEQEAKVAQRSGH-RMALMLI 583 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K++ND LG GD +L+ RRI ++ D +ARL G+ F +IL +N I Sbjct: 584 DLDRFKEVNDSLGHDTGDTLLIEAARRITSCVRESDTVARLGGDEFTVILPDIDNCGSIE 643 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++++ P L E ++ASIG + + KNA+ AMY AK+ G N Sbjct: 644 RIARTIIETLSEPFALGPDEAFISASIGVTVYPDDARELDVLFKNADQAMYAAKNAGRNR 703 Query: 692 VESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F R+ + DL A+ + + L Y PI+ L +I EALI+W HP+ Sbjct: 704 LNYFTPDLQVAAEKRLRLTSDLRTALPHDQFRLYYQPIVDLSTGDIFKAEALIRWLHPER 763 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S +F+ +AE+ +I I ++ + + WR + + P I +N++ + + Sbjct: 764 GMVSPLDFIPLAEDTGLIVPIGEWVFRQAVQQAKLWRQRFH-PSFQISVNMSPVQIRQDN 822 Query: 810 LCEGM-QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + +++ I + +E +++ L R GI +++DDFGT S Sbjct: 823 QLGALWSDYLTREGMPGQSIAIEITEGLLLHADLNIDARLATFRHAGIRISIDDFGTGYS 882 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL D +K + S + A+ +++ +A + +IA+ + Sbjct: 883 SLAYLKRFDIDFLKIDRSFVQNLGFDADNQALCEAMVVLAHKLGLKVIAEGVETVEQRDF 942 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953 LT +GCD+ Q + P+ + L+ Sbjct: 943 LTAVGCDFAQGFLYSQPVPPDQFETLV 969 >gi|71279397|ref|YP_270237.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71145137|gb|AAZ25610.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 1071 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 149/582 (25%), Positives = 272/582 (46%), Gaps = 15/582 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + + +R S AV + + + + T P I G + Sbjct: 487 EISDMVIAFNQMLAERIKSEGEQRISAAVFKYASEAIMITNAENRIETVNPAFCHISGFS 546 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G N L ++ F + + Q E + + + + + I Sbjct: 547 IEEVLGKSPNILNSGKHDNH--FYQKMWQSLEQDN-SWQGEIWNKRKNGEIYPEFLAISV 603 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + + L+YI + +DIT+ KK E I A D+LTG+PNR ++RL L + Sbjct: 604 VRDQDKKPLQYISLFSDITKHKKYEEDIWLQANYDSLTGLPNRGLCVERLHNKLKGDKAE 663 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 D+ ++ ID+D++K +ND G + GD++L R+ ++ D +AR G+ F ++L Sbjct: 664 DS-EVALLFIDLDRFKFVNDTWGHSSGDELLKLAAIRLRNCIREKDTVARFGGDEFVVLL 722 Query: 622 ISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + +N I + S++MP +L E V+ASIG +LKNA+ A Sbjct: 723 VGLSNRFAIERVVKNILTSLSMPFHLRNNNEAVVSASIGVTIGPVDGDNVELLLKNADTA 782 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G N + F S + + ++ L A++ E L Y P++ L EI+G Sbjct: 783 MYQAKAAGRNTFQFFTKSMNETVSRRMHIEQALRQAIKRQEFVLHYQPVVSLDTGEIIGA 842 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP G I F+ IAEE +I+ I +++E+ D+ W D I + + Sbjct: 843 EALIRWQHPDKGLIYPDSFIEIAEEAGLIEPIGQWVIEQACTDLRYWHDLG--LKIQVAV 900 Query: 799 NIASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 N++S+ + + ++ + SPS +K+ +ES +M N E L +R +G Sbjct: 901 NVSSRQCKQTSQTPIKDIIKKALKVNNISPSSLKVEITESSLMDNSEEMMTTLQDIRSLG 960 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 +++ +DDFGT S LSYL + P D +K + S + GS + +++ +++ + ++ + Sbjct: 961 VAIYMDDFGTGYSSLSYLKHFPIDVMKIDRSFIAGSIDDKTDASLVEAVVLIGHSLSLKL 1020 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + I + L +GCDY Q ++ P+ +++ L ++ Sbjct: 1021 VGEGIETKQHYDYLRSLGCDYGQGYFISKPIASKALITLCQQ 1062 >gi|127510976|ref|YP_001092173.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella loihica PV-4] gi|126636271|gb|ABO21914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella loihica PV-4] Length = 1094 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 160/640 (25%), Positives = 285/640 (44%), Gaps = 14/640 (2%) Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 + G+ L + + + + + L + Q + V + Sbjct: 451 LSFLVLGIMAAMCNFLFLIVLGRLIVNNLVTRIGTIASLMQRMAQNTQLQLSVPVDGRDE 510 Query: 384 FTVIQHVL-ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + L A Q + S + + D P I G Sbjct: 511 VAKMAMALNAMLSERQEANRELSLASAVFEYCAEGIVVTDKDNLIEAVNPAFTQITGYTL 570 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G L H + + S Y G+ Q E + + Q + I + Sbjct: 571 EEVKGRSPAVLNS-HQQPHHFYEQMWQSLKQY--GKWQGEIWNKRKNGQIFPEYLAITVV 627 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G ++++IG+ DI+ +KK + I + D LT +PNRQ + RL+ +L L+ Sbjct: 628 KDDKGRVVQHIGLFLDISNRKKYEQDIWYKSNYDALTNLPNRQLYTSRLSQMLQLAEQR- 686 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 V+ ID+D++K IND+ G AVGD++L R+ LL+ D +ARLSG+ F +++ Sbjct: 687 CCSVAVLFIDLDRFKYINDIYGHAVGDELLQVAAARLEALLEQHDFVARLSGDEFVVVMG 746 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + +I A + + ++ P + E+ ++AS+G + + S+ + + +NAE AMY Sbjct: 747 HTKHQGEIEQRAQNILQHLSSPFGINRNELLISASVGISCYPSNGTSVEVLTRNAETAMY 806 Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N F + +++ L AV E L Y PI+ E V LEA Sbjct: 807 QAKQDGRNCFGYFSPDMNNNMLARITLEQSLRSAVLQHEFCLHYQPIVDTSSGEGVALEA 866 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G + EF+ IAEE +I+ I +++++ RD+ Q M I + IN+ Sbjct: 867 LLRWRHPQRGLVPPDEFIPIAEETGLIEPIGEWVIQQALRDLRQCHSQGIM--INMAINV 924 Query: 801 ASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 + + L + + L+ K +P + + +ES++M + E S L +R +G+ Sbjct: 925 SGRQLAHGDPSHFACMLNGLLQKYDVAPQYVHIEITESILMADTELSLKALTAIRHLGVE 984 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915 + LDDFGT S LSYL P +K + S + E ++++II M ++++ ++A Sbjct: 985 IYLDDFGTGYSSLSYLKQFPISVIKIDKSFVDNMLEDRADANLIKAIITMGQSLDMRLVA 1044 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + E L +GCD++Q VA P+ + LL+ Sbjct: 1045 EGVESEPQRSFLQGLGCDFVQGYLVAKPMPLKELEPLLRR 1084 >gi|146282167|ref|YP_001172320.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501] gi|145570372|gb|ABP79478.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501] Length = 708 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 151/574 (26%), Positives = 260/574 (45%), Gaps = 10/574 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445 I+ + A + + R + + ++ + P +A I G ++ + Sbjct: 134 IEDITAQRAVLEALEQAELRYRSIFENASEGIFQSTRDGRYLAANPALARIYGYDSASEL 193 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + + +++ R + L +E V D W+ + Sbjct: 194 VADLADIERRLYVQ--PGRREAFCQLMEQHGEVLNFESEVYRRDCTRIWISENAHVVRGP 251 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 NG+ + Y G DI+E+K + + A D LTG+PNR DR+ L +A Sbjct: 252 NGEFICYEGTVQDISERKHYQQQLERQANHDLLTGLPNRILLNDRIEQGLARAARL-GYY 310 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 T++ ID+D +K IND LG GD++L S+ R+ L+ D +AR+ G+ F ++L Sbjct: 311 LTLVFIDLDNFKFINDGLGHVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVLVLGDHY 370 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + I P+ L RE V AS+G A + + +LK+A++AMY AK Sbjct: 371 RISTVISLLERVLNEIRRPVTLAGREFQVGASLGVAMFPDDGEDAQTLLKHADIAMYAAK 430 Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 RG N+ + F R +R+ ++ + A+E E + Y P + IVG EAL + Sbjct: 431 KRGRNNFQFFTHDLNRIADERLNLEAAMRTALERDEFAVHYQPKVDAQ-RRIVGFEALAR 489 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W H G I F+ +AEE +I + L +L R D W P+ + +N++ Sbjct: 490 WTHADLGVIGPDRFVPVAEESGLIMPLTLAVLRRAFSDARRWNA-GRQVPLLVAVNLSPL 548 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L +++ E + A++ + SP ++L +E+V +G+ R+ +L + G L +DDF Sbjct: 549 LFLGDDVVERVMAVLDEVGLSPLLVELEITETVFLGDGSRAVSILADFKARGFRLAMDDF 608 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L YL P D +K + SL+TG ++ I R+ I + K++ T++A+ + Sbjct: 609 GTGYSALGYLRRFPLDIIKIDRSLVTGLEQEDEVAMIARAAISLGKSLHKTVVAEGVENA 668 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD Q ++ PL I LL Sbjct: 669 AQFEFLRHNGCDEFQGYLLSRPLPATGIDALLAA 702 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 11/140 (7%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 VL + ++ E +A D W + + + G ++ ++ Sbjct: 16 EVLDRSRVLDTLVNNLE--GMAYRCRNDASWT------MIFVSQGSLGLCGYSAAALVDD 67 Query: 449 IR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +W H +DR R +D + GR +R+R A W+I R + + G Sbjct: 68 AEVSWEQITHPDDRARVRRSIDGAIAA-LGRFTVHYRIRTAAGFIKWVIERGVAVPDEQG 126 Query: 508 DILRYIGIANDITEQKKSLE 527 +I+ G DIT Q+ LE Sbjct: 127 EIV-VEGFIEDITAQRAVLE 145 >gi|332162863|ref|YP_004299440.1| hypothetical protein YE105_C3243 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604293|emb|CBY25791.1| conserved putative membrane protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325667093|gb|ADZ43737.1| hypothetical protein YE105_C3243 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 854 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 138/572 (24%), Positives = 267/572 (46%), Gaps = 17/572 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + A + + ER + D +W+ D + TI GL+ Sbjct: 286 RAMTEARAADENKAALIASEERFRHVAEAATDWLWETDADLRITYLSQRFLTITGLSVEH 345 Query: 445 MHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + L D R+ L + + R LQ + +A I +P+ Sbjct: 346 WLGRNLDSLLNC---DVIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRIYAKPII 400 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ +I + G A+DIT + ++ E I + D LTG+PNR + L L A + Sbjct: 401 KNDQNI-GFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLHNLAAAPH 459 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ +D+DK+K +ND G GD VL ++ R+ L+ D++AR G+ F +I+ Sbjct: 460 -PLVILNVDLDKFKPVNDTFGHVAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIISG 518 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +++ +I + I P + E++I ++ASIG A + + E+L+ A++AMY Sbjct: 519 LSSTKEIEQLCARVIARIESPYLINEKDIFISASIGIALAPQDSMQAEELLRFADIAMYE 578 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK+ G N + ++ L A++++E L Y P R+ ++ G EAL Sbjct: 579 AKNSGSNRWSFYSSEMNDRLMQRSELERFLRQAIKHNEFSLYYQPRYRIKGTQLTGAEAL 638 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+HP G + +F+ +AEE +I AI+ + + + +D +W + I +NI+ Sbjct: 639 VRWNHPVLGLLMPDQFIALAEETGLITAISDWTMLQACQDAATWPAS-----LIISVNIS 693 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + L E ++ ++ + R++L +E +++ + + + + L+ +G+ L++D Sbjct: 694 AIEFRSQRLIERVRQVLLLSGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRLSMD 753 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL PFD +K + S + + + +I+ II + + T+ A+ + Sbjct: 754 DFGTGYSSLNYLRRFPFDGLKIDKSFIDELTQSHEGRSIVEGIINLGHALSMTVTAEGVE 813 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++ L + CD Q + P+ + +L Sbjct: 814 TTEQLEHLQTLMCDEAQGYLLGKPMKLSELLN 845 >gi|56475524|ref|YP_157113.1| sensory box/GGDEF family protein [Aromatoleum aromaticum EbN1] gi|56311567|emb|CAI06212.1| Sensory box/GGDEF family protein [Aromatoleum aromaticum EbN1] Length = 1008 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 147/575 (25%), Positives = 252/575 (43%), Gaps = 14/575 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASG 443 IQ + + + ER S+A+ + V + V G Sbjct: 400 GAIQDITELRATETALRNSEERFSIAMTAAPFAVAITRVEDGRFVEVNDKYELHFGWKRE 459 Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G R + +L L +E + + + R + Sbjct: 460 ELIGKTSVETNLWPDPESRQRWLEMLRQH----GSVLDFETLGCERNGAVRQVSLSSRYI 515 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + +G+ + +DIT++K++ I A D LTG+PNR F DR + Sbjct: 516 -DIDGE-KHVLTFVHDITDRKEAQARIEYLAHHDALTGLPNRVLFRDRFALATAWAERA- 572 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + + ++ +D+D +K IND LG VGD +L + R+ E L+ D ++RL G+ F I L Sbjct: 573 HAKVALLFVDLDHFKTINDTLGHPVGDGLLQGVALRLRECLRETDTVSRLGGDEFLIALT 632 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + I + ++ P L E+T T SIG A W +LKNA+ AMY Sbjct: 633 DIRDPQAINSATAKIFDTLTRPFELEGHELTNTMSIGIAIWPDDGEDFDTLLKNADTAMY 692 Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N + + +++ ++ L A+EN E L Y P I L +VG+EA Sbjct: 693 QAKRAGRNTWRFYTEQMNANAVEQLQLRTALHSALENDEFLLHYQPQINLASGHVVGVEA 752 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W K + F+ AEE +I I ++L + W Q P + I +N+ Sbjct: 753 LLRWHWDKRELVPPDRFIPAAEESGLIVPIGDWVLREACMQAVRWTRQGL-PELTIAVNL 811 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ +L + +S + P+R++L +ES+++ + E L RL+ +G+ L++ Sbjct: 812 SAVQFRRGDLERSVVRALSLSGLDPARLELELTESLLLVDTESVIETLRRLKSLGVRLSI 871 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL D +K + S + AI+R+I+ MA ++ +IA+ + Sbjct: 872 DDFGTGYSSLAYLKRFAVDKLKIDQSFVRDIATDPDDAAIVRAIVSMAHTLKLQVIAEGV 931 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 E + L CD Q H A P+ +++ + L Sbjct: 932 ESEDIDRFLHIFNCDEAQGYHYARPMPGDALAEWL 966 Score = 90.0 bits (222), Expect = 2e-15, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 24/191 (12%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + + A L + W+W + + +LG A G + +L ++H + Sbjct: 287 VKESRRQLAEATLLAHVGYWEWQLPAGVLHWGEQTDRLLGHAPGKVTPSGATFLAHVHPD 346 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 DR+ V + EFR+ AD + G +R G DI Sbjct: 347 DRERVAGEFAGAVRNQ-CSYVSEFRLIRADGALRIARANGHLQYDREGRAVRVCGAIQDI 405 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID--KYK 577 TE + + T + N +R + + + V + ++ ++ Sbjct: 406 TELRATE------------TALRNS---EERFSIAMTAA------PFAVAITRVEDGRFV 444 Query: 578 KINDVLGIAVG 588 ++ND + G Sbjct: 445 EVNDKYELHFG 455 Score = 38.8 bits (89), Expect = 4.6, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 34/143 (23%), Gaps = 8/143 (5%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + + + + + D + + +L L + P+ Sbjct: 45 RELEDRNAALANLNRDYDHLLASTKIGTVFLDAGLRVRRFSAAVEDVLALRASDAGRPLA 104 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 D F L G R R D W + R+ P G Sbjct: 105 EITYR--AGDASRFLADLQHVATTGEG------REREVDVGGRWYLERMLPFHGEGGVRD 156 Query: 511 RYIGIANDITEQKKSLEGILCNA 533 + DI K + + A Sbjct: 157 GVVLTYTDINRVKTAQTEVAVLA 179 >gi|77461863|ref|YP_351370.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1] gi|77385866|gb|ABA77379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas fluorescens Pf0-1] Length = 989 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 142/578 (24%), Positives = 268/578 (46%), Gaps = 8/578 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + S+ + + + + + + + D + + + G Sbjct: 412 RVIRMVGTRRDISVSKSLEAQQQLAATVFEAASEGIVILDPNYSLIAINQAFSRVTGYDI 471 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G M G LP D + + G Q E + + + +++ + Sbjct: 472 GDMLGRNVVELPC--SRDARRHYVAIRHALEQ-HGSWQGELVETRKNGELYPQWLQLNAV 528 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +S G++ +G D++ +++S E + D LTG+ NR F +RL Sbjct: 529 RDSRGNVSHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLHEAHQRVRQGG 588 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ I++D++K +ND LG + D +L ++RR+ L D +ARLSG+ F ++ Sbjct: 589 RRSLALLHINLDRFKLLNDSLGHEIADQLLQKMSRRLVNALPEADTIARLSGDEFAVLFD 648 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + N +A A + + +P+ + E+ V+AS+G + + S ++ + +AM Sbjct: 649 AYGNLSSLARVATRLSSKLRLPLTVEGHELVVSASMGISMLPDNAREISALVSQSNMAMQ 708 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAKH GGN+ + + S S R+ ++ L A+E+ +L + Y P + L + EA Sbjct: 709 HAKHLGGNNFQFYTDSLQASTLERLQLENQLRKAIEDKQLNVFYQPKLCLATGRLNAAEA 768 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++WDHP G + +F+ +AEE +I I F+L + W+ Q PI + +N+ Sbjct: 769 LVRWDHPTMGRVPPGDFIGLAEETGLIGPIGEFVLRQACWQACEWQRQGLA-PIRVSVNL 827 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L ++ ++ +T +P ++L +ES ++ + E +LR +G+ L + Sbjct: 828 SVHQLRQGKLVSLVRQVLEETGLAPHYLELELTESQLLDSVEHIIATFQQLRDLGVKLAI 887 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL IP D VK + + + G E + AI R+II MA + ++A+ + Sbjct: 888 DDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLGEGSEDAAITRAIIAMAHGLSLKVVAEGV 947 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L GCD +Q ++ P+ + LL+E+ Sbjct: 948 ERSEQLAFLKAEGCDEVQGYLISRPVEAVGLAALLREQ 985 Score = 134 bits (337), Expect = 9e-29, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 2/154 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + V Q +Q + R +LA+ S +WDW++ D V T I + G+ Sbjct: 286 LEDRVAQRSRELDVANQALSKSEARLALALKASELGLWDWNLQTDEVHHT-QIQELFGID 344 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G +R+ P +H D + L + R Q E+RVR D + W+ R R Sbjct: 345 PEYVTGLLRHLRPRLHPEDVPPLKRALIEHLKGRTEDYQIEYRVRHGDGHWVWIEDRGRA 404 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + NG ++R +G DI+ K A Sbjct: 405 VERDENGRVIRMVGTRRDISVSKSLEAQQQLAAT 438 >gi|226225788|ref|YP_002759894.1| putative signaling protein [Gemmatimonas aurantiaca T-27] gi|226088979|dbj|BAH37424.1| putative signaling protein [Gemmatimonas aurantiaca T-27] Length = 966 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 155/673 (23%), Positives = 291/673 (43%), Gaps = 18/673 (2%) Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 L + F + + +V ++P ++ + + L Sbjct: 281 GLPDLGFVVRPAACFLMAAAGWLSSATVMRRDVRPSRDRDGPSVSILPYAAVVPGFALLL 340 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 MA +R ++ L + + + + R V S Sbjct: 341 RMAFEERHQ-PLLGLVLGAAALTAIAFVRQFAASREAVSTLAEASARDSEARFRSLVQHS 399 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG- 473 D++ D +P ++T+ G + G N L +H+ D+ + L+ Sbjct: 400 SDVIMIVDPDGTLRFASPSMSTVFGHEPSRIVGT--NLLSLLHVEDQQHAVQFLEELARS 457 Query: 474 ------YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 G L+ E+R+ +D + + + + + + D+TEQ + Sbjct: 458 GARTGAGSPGVLKREWRLAHSDGSWMTVDNVGTNLL-REPVVRGLVLNSRDVTEQSMIKQ 516 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + AF D LT + NR FL ++ L A + TV+ +D+D +K +ND LG A Sbjct: 517 QYIHQAFHDPLTDLANRSLFLYQVGHALARGAR-QHSPVTVLFLDLDNFKTVNDSLGHAA 575 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LV RR+ ++ D++ARL G+ F +++ + ++ A + +++ P L Sbjct: 576 GDRLLVDAARRLASCVRSSDLIARLGGDEFAVLVEDAQSVEEVLVVASRIGTALSRPFML 635 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 +E+ V+AS+G A + +S E+++NA++AMY AK RG F + + Sbjct: 636 SGKEVFVSASVGIARSSR-GESSDELVRNADVAMYVAKTRGKGQHVLFEQEMHDAALERL 694 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + DL A+E E +L + PI+ L I+G EAL++W + G + F+ IAE Sbjct: 695 VVEADLRRAIEREEFFLEFQPIVELDTGNIIGAEALVRWLCRERGTVPPGVFIPIAEVTG 754 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++L R R+ W + + I +N++ + L D + + ++ + +T P Sbjct: 755 LIVPIGKWVLRRACREAQRWTRERGIAA-RITVNLSGRQLQDAGIVDDVRQALEETGLDP 813 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 +++ L +ES++M N + S L L+++G+SL +DDFGT S LSYL P D +K + Sbjct: 814 TQLVLEITESMLMQNTDVSMARLTALKELGVSLAIDDFGTGYSSLSYLQRYPIDILKIDK 873 Query: 886 SLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + + + + + +I+ + + +A+ I E L +GC+ Q + P Sbjct: 874 AFVDVIDKGGEGPVLASAIVALGDTLRMNTVAEGIETEAQRGHLLTLGCELGQGFLFSPP 933 Query: 944 LGFNSILKLLKER 956 L LL R Sbjct: 934 LDEEEFWHLLLAR 946 >gi|167644705|ref|YP_001682368.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Caulobacter sp. K31] gi|167347135|gb|ABZ69870.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caulobacter sp. K31] Length = 735 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 132/531 (24%), Positives = 249/531 (46%), Gaps = 14/531 (2%) Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVR 486 V +LG A M G + ++ D+ + R+ E V Sbjct: 176 VLLNRAGEKMLGHARADMIGRTDVDF---YPAEQAAIYRERDAEVISSGEVRVIEEDHVP 232 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D + + + +G +G++ DI E+K++ I A D LT +PNR Sbjct: 233 RKDGSIALLRTKKIAIPGPDGAAEYLLGVSEDIAERKRAEAQIARLAHYDPLTDLPNRLL 292 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F L+ L +A ++L V ID+D++K +ND LG +GD +L + R+ ++ Sbjct: 293 FQKDLSAALSRAARREDL-VAVHCIDLDRFKTVNDTLGHPIGDALLKTAAERLRACVREG 351 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D +ARL G+ F ++ + A + +++A +L ++ + S+G A + Sbjct: 352 DTVARLGGDEFAVVQTGLTDLTGATRLAGRIVEALAETFDLQGHQVMIGGSVGVAVSPND 411 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVY 724 S E+LK A++A+Y AK G F + R ++ DL +A+ + L Y Sbjct: 412 GSDSDELLKKADMALYRAKADGRGTFHFFERAMDEALQARRALELDLRVALAEGQFELYY 471 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P+ L + ++G EAL++W+HP G +S +F+ IAEE+ +I + ++L R+ Sbjct: 472 QPLFSLGADRVMGCEALLRWNHPTRGMVSPGDFIPIAEEIGLINPLGEWVLREACREASG 531 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + + + +N++ D L + + ++ + SR++L +ESV++ + + Sbjct: 532 WPEH-----VRLAVNLSPAQFRDKHLVGIVVSALAASGLPASRLELEITESVLLQDSVGN 586 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 +L L+ +G+ +++DDFGT S LSYL PFD +K + + + +AI++++ Sbjct: 587 MSILHDLKALGVRISMDDFGTGYSSLSYLRSFPFDKIKIDQTFVRDILDDADALAIIKAV 646 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + ++ T A+ + + EL R GC IQ ++ P I +L Sbjct: 647 LDLGASLGITTTAEGVESVEQLDELRRQGCGEIQGYFISRPKPAAEIAAML 697 >gi|302523204|ref|ZP_07275546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces sp. SPB78] gi|318061390|ref|ZP_07980111.1| hypothetical protein SSA3_25836 [Streptomyces sp. SA3_actG] gi|318078186|ref|ZP_07985518.1| hypothetical protein SSA3_16060 [Streptomyces sp. SA3_actF] gi|302432099|gb|EFL03915.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces sp. SPB78] Length = 719 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 142/581 (24%), Positives = 252/581 (43%), Gaps = 17/581 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A + + R G+ + + V +A + G Sbjct: 137 EAISRAALGARAAVERALHVSEARFRAVFEGAALGISIAGMDGVIVEANDALAGMFGGLV 196 Query: 443 GSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 GS+ G +R W H +D + + V R Q E D W + + Sbjct: 197 GSLRGTNVREWA---HPDDSPTVWRLYEELVKGTREYFQAEKPFYRHDGTVLWTNLTVSL 253 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + G L + + D TE++ + A D LTG+PNR F +RL L Sbjct: 254 LRDDQGRPLYQLALLEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLDKAL---QAG 310 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGII 620 +N R + +D+D +K +ND LG GD +LV + R+ +I+AR+ G+ F + Sbjct: 311 ENNRFGLCYLDLDGFKTVNDSLGHDAGDRLLVEVADRLQGCAGGAGEIVARIGGDEFVAL 370 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAEL 679 ++ + A M +++A P+ + RE+TV SIG +E+L++A++ Sbjct: 371 TTGPRAREEVHELAGRMMQALATPVRVDGRELTVRGSIGIVEGPGGGKRGPAEVLRSADI 430 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 MY AK GGN E + + L A+E E ++ Y P++ L D + G Sbjct: 431 TMYRAKAAGGNRYEVADPEADARAITRHGLTTALPAALERGEFFIEYQPLVDLGDGTVHG 490 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFI 796 EAL++W HP+ G IS F+ +AE +I + ++L+ AR W+++ P P+ + Sbjct: 491 AEALVRWSHPQHGTISPDRFIPLAEHTGLIVPLGRWVLDESARQARLWQEERGGPAPLRV 550 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L L ++ +T P + L +ES ++G E L RL ++G+ Sbjct: 551 NVNLSPCQLQHPRLVADTVEILERTGLPPGALCLEVTESALIGADEDLLKPLRRLAEMGV 610 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911 + LDDFGT S L+ L +P +K + + G + I+ I+ +A +++ Sbjct: 611 DIALDDFGTGYSNLANLRRLPVSVLKLDRAFTRGMQQFPADPVDLKIVEGIVALAHSLDL 670 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + + +L +GCD Q + A P + +L Sbjct: 671 AVTVEGVETSAQADQLRELGCDTAQGWYYARPGPAARVREL 711 >gi|71733454|ref|YP_272403.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554007|gb|AAZ33218.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 642 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 152/623 (24%), Positives = 285/623 (45%), Gaps = 17/623 (2%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394 + + + + + L I + Q VL+ ++ F ++ ++ Sbjct: 14 LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSAVMIFIARDRLRSLIGGD 73 Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 Q +D +R LA + + V D V I G + + G Sbjct: 74 ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H ++ + S + G+ E R + + IR + +G Sbjct: 134 KFKSGRH--GPKFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + +DIT K+S + + D LT +PNR DR++ L + +++ Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQTLTSARASKRG-CALLL 248 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND LG VGDDVL ++ R+ + LAR G+ F +++ + + ++ Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + ++ P + ++ VTASIG + + +T+ ++L+NA+ A++ AK G Sbjct: 309 AALAQQVINALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368 Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + RV + +L AVE +L + Y P+ L+ I G+EAL++W HP+ Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAVELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S EF+ IAE+ +I I+ ++L+ + +W + +P F+ +N++S+ Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + + +T P+ ++L +ES VM +PE++ L RLR++G+SL +DDFGT S Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L L +P +K + + G + IAI+R++I +A ++ ++A+ I Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607 Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949 L C Q A P+ +I Sbjct: 608 LLGNSCQLGQGYWFARPMVAQAI 630 >gi|212637004|ref|YP_002313529.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212558488|gb|ACJ30942.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3] Length = 845 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 137/569 (24%), Positives = 252/569 (44%), Gaps = 12/569 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IR 450 + E S S + V D+ + I G + G R Sbjct: 278 RNISTHKAAQDQLELASRVFENSVEGVLITDVDGIIIDAHGAYTEITGFEKSELIGQNPR 337 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H D+ F ++ S + G+ E R + ++ I + I Sbjct: 338 VFNSGRH--DKAFFESLWQSLL--GSGKWHGEIWNRRKNGAVFPQLLTISAVYGDEHQIR 393 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + D++ QKK+ + AF D LT +PNR + RL + L+ + + V+ Sbjct: 394 YFVAVFADLSTQKKNEAELAHLAFHDPLTKLPNRMAVTSRLEQEIRLANRSE-YQLGVIY 452 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K++N+ G +GD+VLV L++R+ + +ARL G+ F +IL + +S + Sbjct: 453 IDVDLFKQVNESFGHVIGDEVLVELSQRLTLAIGSLATIARLGGDEFAVILPNIESSDML 512 Query: 631 ADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + + P L E + +TAS+G A + SS +L NA+ AM+ AK G Sbjct: 513 LLRLSKLPQIFERPFMLGEHAPVRLTASMGVALYPQDGRDSSTLLVNADAAMHRAKQDGR 572 Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N+ + S + ++ L A+ YLVY P + + + G EAL++W+ P Sbjct: 573 NNYAFYTQSLTYESVAHLKLQSALHDALAQEAFYLVYQPKVDCKTKALSGFEALLRWNDP 632 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+IS + F+ +AE++ +I+ I ++L++ +SW + I +N+A L Sbjct: 633 LLGSISPAIFIPVAEKIGLIQEIGRWVLQQACEQGVSWLAEGKDFG-RIAVNVAGPQLQR 691 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + ++ T +R++L +ES +M +PE L L +GI L++DDFGT Sbjct: 692 RTFVNEVADVLKATGLPANRLELEVTESCMMSDPESVGRDLILLADMGIVLSIDDFGTGY 751 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL +P + +K + + AI +++I + +++ +IA+ + Sbjct: 752 SSLNYLKKLPINKLKIDQGFVRDIPEDANNTAIAKAVIALGRSLNLKVIAEGVETPEQAM 811 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLK 954 GCD Q + P + + + Sbjct: 812 FFADNGCDEAQGYLFSKPKAASELEHFFE 840 Score = 44.2 bits (103), Expect = 0.12, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 32/191 (16%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + ++ + + VW D + + L+ + Sbjct: 160 RTADKPLNVSLQQF---IDAMKEHVWMKDAEGRYIIVNQSVEMAWELSREQILEHTDE-- 214 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 F + E + N W+ P+ + G++ I Sbjct: 215 ELFTPQLAQQFIEGDKESITKGVQVTAGECKGLDIGNVESWLETTKVPVVSEAGELSGII 274 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 GI+ +I+ K A QD L + +R F + + V++ D+ Sbjct: 275 GISRNISTHK---------AAQDQL-ELASRV-FENSVE--------------GVLITDV 309 Query: 574 DKYKKINDVLG 584 D I D G Sbjct: 310 DG--IIIDAHG 318 >gi|153001290|ref|YP_001366971.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185] gi|151365908|gb|ABS08908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS185] Length = 1419 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 131/561 (23%), Positives = 258/561 (45%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 859 QKEEQLKLFEKAIENISEGMFILDGEYRFVEVNEACCKISLRNRTDFIGNVLTF--DLYP 916 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 F T + + + + GR E D M + I + + G++ Y+G+ +D Sbjct: 917 E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 972 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L+ +++ +MV+D+D +K+ Sbjct: 973 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1027 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L + RI LL + RL G+ F I+L ++ A A + Sbjct: 1028 INDSLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKGSDISASAAIANRII 1087 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 + + + ++ + SIG + + + +L+ A++AMYHAK GGN + + Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + +++ + Y P + L +I G+EAL++ +HP G I ++ Sbjct: 1148 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPVHGLIPPND 1207 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ ++ + +++ Sbjct: 1208 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFSG-RVAVNLSSRQFALPDIQQRIES 1266 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T ++L +E V+ PE + +++ +L K+G+SL LDDFGT S LSYL Sbjct: 1267 ILRLTKLPACHLELEITEGTVIKQPETAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1326 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1327 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1386 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + LL+E Sbjct: 1387 IQGYIFSKAIKETEFTLLLQE 1407 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 2/154 (1%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 V+I I I F +++ +L + I ER L++ GSGD +WDWDI + + Sbjct: 711 VVITIFISFVIVKAILRRRETQRQIVLSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWG 770 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 L + IH D++ R L+ + +RV+ D+ + W+ Sbjct: 771 A-LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWI 829 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + R + + + + LR G +I++ K+ E Sbjct: 830 LDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 863 >gi|47569773|ref|ZP_00240445.1| sensory box protein [Bacillus cereus G9241] gi|47553569|gb|EAL11948.1| sensory box protein [Bacillus cereus G9241] Length = 937 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 185/843 (21%), Positives = 347/843 (41%), Gaps = 73/843 (8%) Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 K L+ +++ + I L + + ++ A+ + ++ YI + Sbjct: 99 AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 158 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287 GF K + S L + I + I F + L + W +I Sbjct: 159 GFAIKFIKHYSIRGLAQFSFDSIFIIIMNIYFTLTFILDVSSFFMLTTDTWILIGYFIAQ 218 Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 S + I L+ Y + I T+ + Y F + G+K LI + Sbjct: 219 SLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHMFQLNAGIKPSSEVSYLIHTASI 278 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384 + I + + K ++ V + +LIG Sbjct: 279 LLIGLSSILYILDKPTQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 338 Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417 + +L + + +R + D Sbjct: 339 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGEVEEGASALSKSEQRYTSLFEDHPDA 398 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ ++ + ++ + + L +I D D + L R Sbjct: 399 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDSKDHDLLKKALQLTKEGRPQ 456 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 L E R + + ++++ I + P N +++ GIA DIT + + + AF D Sbjct: 457 TL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 513 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+PNR+ F L IL+ + T N VM +D+D++KKIND LG VGD +L+ + + Sbjct: 514 LTGLPNRRKFEKDLKNILNTAQTSAN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAK 572 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ L+ D++AR G+ F I+L + A A + + P + E+++T S Sbjct: 573 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIQGEELSITPS 632 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715 IG A + +E++KNA++AMY AK G N F +++ ++ +L A+ Sbjct: 633 IGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEIQFLEGELAKAL 692 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 + +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE I + ++L Sbjct: 693 QQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 752 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W +Q + + +N++ +L + ++ +T P + + +ES Sbjct: 753 RTACLEAKRWHNQ-GFSQLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 811 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 + + + L +L+ +GI +++DDFGT S L+YL P +T+K + G + Sbjct: 812 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 871 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ SII ++K + +IA+ + E K L CD+IQ ++ P+ + +LL Sbjct: 872 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 931 Query: 954 KER 956 ++ Sbjct: 932 HKK 934 >gi|78222002|ref|YP_383749.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens GS-15] gi|78193257|gb|ABB31024.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens GS-15] Length = 736 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 144/606 (23%), Positives = 268/606 (44%), Gaps = 31/606 (5%) Query: 366 IIQPALVGGLVLIVILIGFTVIQH--VLATGYFSQGIFSDGERQSLAVLGSGDIV----W 419 +++ ALV L+V +GF +++ + A Q + + + + Sbjct: 136 LLETALVAACALLVGGLGFVMLRTIPLRAVNQAHQSLAESEAKYRSLYDSMKEGMALHRI 195 Query: 420 DWDIVRD-----RVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVG 473 D+ + V P A+ILG+ ++ G + V Sbjct: 196 ISDMEGNSVGFEVVDVNPSFASILGMEKSAIIGMGGEEFFSG-------ALMARFAEIVR 248 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 F + + + +G + + D TE+KKS E I A Sbjct: 249 GAESGEALMFELPLPEKNLF---FDVSVFYPDSG---LFATLFEDTTERKKSDEQIQRLA 302 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 + D LT +PNR FLDRL L + D+ + + ID+D +K IND LG A GD +L Sbjct: 303 YYDTLTALPNRTLFLDRLEQALAGAIRDNG-KFALFFIDLDGFKVINDNLGHAQGDLLLT 361 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 +++R+ E ++ D LARL G+ F +++ A A + + I+ P + R + Sbjct: 362 MVSQRLREGIRRKDTLARLGGDEFMVLISYAGEERNAAHLAQHLLERISPPYEIGSRVVY 421 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG--NHVESFRVSSFRSDRVMIKEDL 711 +ASIG + + + +L+ A++AMY AK G H S ++ +R+ ++ L Sbjct: 422 TSASIGISIFPDDGRDAETLLRCADMAMYAAKEAGRNGYHFHSPEMNRKAHERMELEMSL 481 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+E E +L + PII + + +VG EAL++W HP G + F+ +AE +I + Sbjct: 482 RQALERDEFFLEFQPIINVGGDCLVGAEALVRWQHPAQGRVMPGTFIPLAESSGLIIPLG 541 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 ++L + + WRD PP+ + +NI+ + + ++ +T ++ Sbjct: 542 EWVLRKACEKMKEWRDAGL-PPVKLSVNISGRQFEQRNFTALVDEVLKETGVDARALQFE 600 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +E+ +M + + L +L+++ + + +DDFGT S L+YL P D +K + S + Sbjct: 601 LTETSLMKDAGATVSALYKLKELDLRIVVDDFGTGYSSLAYLKNFPIDHIKIDRSFVMDI 660 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 +I+ +I+ MA + ++A+ + L +GC +Q PL Sbjct: 661 CDDPDDRSIVEAIVAMANKLNLDVVAEGVETREQRDLLLDLGCHEMQGFLFHRPLPEEKF 720 Query: 950 LKLLKE 955 ++LL++ Sbjct: 721 VELLRD 726 >gi|301052276|ref|YP_003790487.1| sensory box/GGDEF family protein [Bacillus anthracis CI] gi|300374445|gb|ADK03349.1| sensory box, GGDEF family protein [Bacillus cereus biovar anthracis str. CI] Length = 569 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 258/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ IAEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 362 ISPSEFIPIAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565 >gi|330969162|gb|EGH69228.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 628 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 148/597 (24%), Positives = 274/597 (45%), Gaps = 46/597 (7%) Query: 400 IFSDGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIR 450 + + ER L V+ + D + D+ V P I G + G Sbjct: 31 LVTSFERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTP 90 Query: 451 NWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L D I+ + + R ++ E D W+ + I P++N G Sbjct: 91 RILQC---EDTSRATLDIIREALSHWR-PVEVELLNTRKDGSQFWVELSIVPVANEKGWF 146 Query: 510 LRYIGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIP 542 ++ + DITE+K + E + AF D LT + Sbjct: 147 THWVSVQRDITERKESQQLAQRARLEWEEKLALQSRLEERERMSEELTYIAFHDELTSLF 206 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR ++ LTT + + R TV+ +D+D +K +ND +G GD +L + R+ Sbjct: 207 NRAYLMNELTTAFETRKSRYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQTC 265 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 ++ D+LAR+ G+ F I+L+ ++ A + + I + ++I ++ SIG S Sbjct: 266 VRSNDVLARIGGDEFAILLMGKDQPETAVKMAERIVSQLNTAIQIEGQDIFISCSIGIVS 325 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSEL 720 S E+L++A++AMY AK +G F S D +MI+ L A+E+ + Sbjct: 326 AGESHTKPEELLRDADVAMYSAKKQGRGRWSIFNTSMREAAIDTLMIQNALRQALEDKDF 385 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 + Y PI E +VG+EAL++W+H G IS F+ IAE+L +I + +++ + Sbjct: 386 LVFYQPIYSGNCEHLVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHKACS 445 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 ++ +WR + + + + +N++ K+L + + +I+ T +++++ +ESV + Sbjct: 446 EVQAWRKEFSHLDLRLNVNVSGKELSHPGFVDRVTRIITSTGLPATQLQIEVTESVFLYQ 505 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAI 898 P+ +L ++R++G+ + LDDFGT S L Y+ P D VK + S ++ E+ AI Sbjct: 506 PDAIAEILRQIRQLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAI 565 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + SI+ + + + I A+ + L +MGC Y Q + P+ ++L ++K Sbjct: 566 VSSILSLGRALNLDITAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 622 >gi|42784524|ref|NP_981771.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] gi|42740456|gb|AAS44379.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] Length = 892 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 176/823 (21%), Positives = 338/823 (41%), Gaps = 76/823 (9%) Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257 + L + Y ++ A+ + ++ YI + GF K + S L + Sbjct: 79 MEITLFLHSLSIY----DQVIFSYTALPFFIVQYILLFSGFAIKFIKHYSIRGLAQFSFD 134 Query: 258 EIALSSSLIIFLFMYLHWNRWHAKV----GYITFSGIACIAILFCMS-------FYYPMV 306 I + I F ++ +R ++ ++ +++ Y Sbjct: 135 SIFIIIMNIYFTLTFI-LDRSSFRMLTTDHWVLIGYFIAQSLVIYAVISLYRREQYSASR 193 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + I T+ + Y F + GMK LI ++ I + + K + ++ Sbjct: 194 ISLIIGFTIILVYGYIHLFQLNAGMKTSSEVSYLIHTASILLIGLSSILYILDKPMQHET 253 Query: 367 IQPALVGGLVLIV----------------------ILIGFTVIQHVLATGYF-------- 396 V + +LIG + +L Sbjct: 254 KTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQA 313 Query: 397 -------------------SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + + +R D V+ ++ + ++ Sbjct: 314 LIDTYEQLTTQLEDKVEEGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESL 373 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 + + L +I D D + L R L E R + + ++++ I Sbjct: 374 F--TAYYCEVESYSLLHFIDSKDHDLLKKALQLTKKGRPQTL--EVRTKEKEGYYYYLHI 429 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + P N +++ GIA DIT + + + AF D LTG+PNR+ F L IL+ Sbjct: 430 TLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNT 488 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + T + VM +D+D++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F Sbjct: 489 AQTSAS-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEF 547 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L + A A + + P + E+++T SIG A + + ++KNA Sbjct: 548 TILLPDMYSEKSAAFIAEQILNILNKPFFIQGEELSITPSIGIAMYPDYGTDVTALMKNA 607 Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK G N F +++ ++ +L A++ +E +L Y P + ++I Sbjct: 608 DMAMYRAKANGKNRFVFFSKEISIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQI 667 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G EAL++W HPK G +S ++F+ +AEE I + ++L + W +Q + Sbjct: 668 IGFEALLRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLK 726 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ L + ++ +T P + + +ES+ + + L +L+ +G Sbjct: 727 VGVNLSVVQFNHANLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLG 786 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 I +++DDFGT S L+YL P +T+K + G + AI+ SII ++K + + Sbjct: 787 IQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEV 846 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 IA+ + E K L CD+IQ ++ P+ + +LL ++ Sbjct: 847 IAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLLHKK 889 >gi|302186038|ref|ZP_07262711.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 748 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 156/703 (22%), Positives = 297/703 (42%), Gaps = 62/703 (8%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 A L +S Y +V +IY ++G+ + + Sbjct: 61 AWLRMISSYGDVVLVGKDSPADTMETNRSGSTLIYVAIRGFRHE----------LLGAML 110 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410 L + + + + AL + + + ER L Sbjct: 111 LSNSDDAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164 Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 V+ + D + D+ V P I G + G L D Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC---EDTSRA 221 Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 ++ + R ++ E D W+ + I P++N G ++ + DITE+K Sbjct: 222 TLDVIREALSQWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERK 280 Query: 524 ---------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + E + AF D LT + NR ++ LTT + Sbjct: 281 ESQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFE 340 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + R TV+ +D+D +K +ND +G GD +L ++ R+ ++ D+LAR+ G+ Sbjct: 341 IRDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDE 399 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L+ ++ A + + I + ++I ++ SIG + S E+L++ Sbjct: 400 FAILLMGKDQPETAVKMAERIVSQLHTAIQIEGQDIFISCSIGIVTAGESHTKPEELLRD 459 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY AK +G F S D ++I+ L A+E+ + + Y PI E Sbjct: 460 ADVAMYSAKKQGRGRWSIFNSSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGNCEH 519 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG+EAL++W+H G IS F+ IAE+L +I + +++ + ++ +WR + + + Sbjct: 520 LVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDL 579 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ K+L + + +I+ T ++++ +ESV + P+ +L ++R++ Sbjct: 580 RLNVNVSGKELSHPGFVDQVTRIIAATGLPADQLQIEVTESVFLYQPDAIAEVLRQIRQL 639 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912 G+ + LDDFGT S L Y+ P D VK + S ++ E+ AI+ SI+ + + + Sbjct: 640 GVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLD 699 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I A+ + L +MGC Y Q + P+ ++L ++K Sbjct: 700 ITAEGVETAEQYDLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742 >gi|46203146|ref|ZP_00051986.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 579 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 218/532 (40%), Positives = 339/532 (63%), Gaps = 11/532 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 +LIV+LIGFTV+QH A G S + SD ER++LA+ G+GDIV+DWD+ DRV P+I Sbjct: 1 MLIVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIE 60 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 LGL G++ GP NWL +H D + + LD+ + RRGR+ ++FR+R+AD + W Sbjct: 61 AQLGLKRGTLEGPAANWLGLLHPFDVERYSAALDTVIEERRGRIVHDFRLRSADGPYAWY 120 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 ++ RP+ S+G+++R +G +D+TE K + E +L +A D+LTG+PNR+ F DRL L Sbjct: 121 RLKARPVIGSDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAAL 180 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 L++ D L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+ D LAR++G+ Sbjct: 181 ALASQDPRLKPAVIALDIDRFKTINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGD 240 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-------- 667 F +IL+SE +I FA +R++IA P+ +RE+ +T SIG A ++ Sbjct: 241 AFAVILLSEREPDRILAFAEMIRRAIATPVTYADREVFLTVSIGIALHEANAGGQGAGQQ 300 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYH 725 E+ KNAE+AM AK GG+ +E FR + RSDR+M++ DL A+E +E+ +++ Sbjct: 301 PRRDEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQ 360 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+RL D + G E L++WDHPK G I S FM +AEE +I + F +ER A ++ +W Sbjct: 361 PIVRLEDRTVAGFETLLRWDHPKLGRIPPSTFMPVAEETGVIVQLGNFAIERTALELAAW 420 Query: 786 RDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 + + PPIF +N++S+ LL ++L ++ +I++T P +KL +E +VM NPE + Sbjct: 421 QRSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYA 480 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896 +L R+ +G L LDDFGT S LSYL PFDT+K + + + + Sbjct: 481 AQMLARIHDLGAGLILDDFGTGYSALSYLQRFPFDTIKIDQTFVRQMGQDAA 532 >gi|83593140|ref|YP_426892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83576054|gb|ABC22605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 886 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 134/536 (25%), Positives = 243/536 (45%), Gaps = 10/536 (1%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D + G + G + L + + + Sbjct: 335 TDGEGRVEWVNEAYHLLSGYERDQIIGTLPAVLAG-PSAANPTAIEAWPTLRAGQ--VWR 391 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 E D + + + I P+ +++G + + + D+T +KK+ E I + D LT Sbjct: 392 GEIHETHRDGRTYIVDKTITPIVDASGRLSHLVAVDEDVTARKKAEERIRYLSNYDTLTR 451 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR F DRL + + VM ID+D++ +ND LG A GD +L+++ RI Sbjct: 452 LPNRVLFRDRLYQAVVQARRGHGG-LAVMFIDLDQFSLVNDTLGHAAGDHLLMTIASRIN 510 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 + D +AR+ G+ F +I + ++ A A + I P++L RE+ + A++G Sbjct: 511 AAAEEADTVARVGGDEFALIQTALTSADSAASLARRLIDVIRTPVDLGGREVVIGANVGI 570 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS 718 A + ++KNA++AMY A G + F + R+ ++EDL A+++ Sbjct: 571 AIYPQDGTDPDNLMKNADMAMYRAVKSGDDSCCFFSNEMNAEAAVRLSLEEDLRRALDSG 630 Query: 719 -ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 +L+L Y + VG EAL +W HP G I + F+ +AE+ +I A+ ++L Sbjct: 631 DQLFLHYQLQFCIESGRPVGAEALARWTHPTLGAIPPTRFIPVAEDSGLILALGDWVLGT 690 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 + WR + I +N+++ L E + L+++ P ++L +ES++ Sbjct: 691 ALAEYARWRAAGCGR-LTIAVNMSAVQFRQKGLVERVTDLLAQHGVPPEDLELELTESML 749 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--R 895 M + +++ L L + GI L++DDFGT S L YL D +K + S + TE Sbjct: 750 MQDADQAVAQLTALSQAGIRLSIDDFGTGYSSLGYLKLFRVDKLKVDQSFVRDVTEDGND 809 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 I R+II + ++ +IA+ + + L R GCD +Q +A P ++ + Sbjct: 810 AVIARAIINLGHSLGLEVIAEGVETPEQMAYLRREGCDVVQGYLMAYPEPGETVAR 865 >gi|187927608|ref|YP_001898095.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J] gi|187724498|gb|ACD25663.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12J] Length = 917 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 253/577 (43%), Gaps = 13/577 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + ++ + ER LAV + + + P IL S S G Sbjct: 337 AVQKAHIARDLRESEERYRLAVDNLTEGIVVQTADGTILACNPSARRILRAGSVSPVGTS 396 Query: 450 R-NWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + D + R L + D W+ + P+ Sbjct: 397 HLALMRRSLREDGSEIPVNERPTRVVLATGRPLLGLTVGLELVDGDVVWVHENVLPIVRP 456 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDD 562 + + NDI + + + + A +D LTG+ NR F R+ +++ + ++ Sbjct: 457 GDNTPSAVLISFNDIGPARAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVMEQAASQANE 516 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + V+ +D+D +KK+ND G GD +L + +R+ ++ D LARL G+ F ++L Sbjct: 517 GHQVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQSDTLARLGGDEFVVLLD 576 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + A + SIA P + E + ASIG A + ++ +L+ A+ AMY Sbjct: 577 NVRSLGEAERLAKRIVHSIAQPFSTSGTEYYLGASIGIALYPEHGNDAATLLRCADAAMY 636 Query: 683 HAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 +AK G N + R ++ L A+ EL L + PI+ +IVG E Sbjct: 637 NAKQNGRNQHRVYTARLSQRAQRRFQLEYHLRRALTAGELSLRFQPIVDATSMDIVGAEV 696 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W + G +S +EF+ +AE+ +I I ++L + R WR MP F+ +N+ Sbjct: 697 LLRWHSTELGEVSPAEFIPVAEDAGLIGDIGEWVLAQACRQAAHWRA-TCMPEFFVAVNL 755 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + L + +++ S +++ +E ++M + +L L +GI +++ Sbjct: 756 SPRQFG-EGLVPTISRCLTEAGLPASALEMEITEGLLMRDTAAVMPMLDALTALGIRISI 814 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL P D +K + S ++G R +++ R+++ MA +++ T+ A+ + Sbjct: 815 DDFGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGV 874 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q P+ + L+ Sbjct: 875 ETLEQAEFLQAAGCDKLQGFLFGPPMTAAAYESRLRR 911 Score = 40.3 bits (93), Expect = 1.6, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 7/141 (4%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458 + +R V D ++ V + G + + G + ++H Sbjct: 35 LPLADDRYEALVRQMPDALYIV-ADDIIVFVNEAGVRLFGAQTARDIVGHELD--EFVHD 91 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 N R + V + G E + D + + P+ G +A D Sbjct: 92 NSMHLARQRREWMVSHGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAIQVVARD 149 Query: 519 ITEQKKSLEG-ILCNAFQDNL 538 IT++K++ + A L Sbjct: 150 ITQRKQAEQALRESEANYRAL 170 >gi|123443785|ref|YP_001007756.1| hypothetical protein YE3597 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090746|emb|CAL13623.1| putative membrane protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 832 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 137/572 (23%), Positives = 266/572 (46%), Gaps = 17/572 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + + ER + D +W+ D + TI GL+ Sbjct: 264 RAMAEARTADENKAALIASEERFRHVAEAATDWLWETDADLRITYLSQRFLTITGLSVEH 323 Query: 445 MHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + L D R+ L + + R LQ + +A I +P+ Sbjct: 324 WLGRNLDSLLNC---DVIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRIYAKPII 378 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ +I + G A+DIT + ++ E I + D LTG+PNR + L L A + Sbjct: 379 KNDQNI-GFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLHNLAAAPH 437 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ +D+DK+K +ND G GD VL ++ R+ L+ D++AR G+ F +I+ Sbjct: 438 P-LVILNVDLDKFKPVNDTFGHVAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIISG 496 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +++ +I + I P + E++I ++ASIG A + + E+L+ A++AMY Sbjct: 497 LSSTKEIEQLCARVIARIESPYLINEKDIFISASIGIALAPQDSMQAEELLRFADIAMYE 556 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK+ G N + ++ L A++++E L Y P R+ ++ G EAL Sbjct: 557 AKNSGSNRWSFYSSEMNDRLMQRSELERFLRQAIKHNEFSLYYQPRYRIKGTQLTGAEAL 616 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+HP G + +F+ +AEE +I AI+ + + + +D +W + I +NI+ Sbjct: 617 VRWNHPVLGLLMPDQFIALAEETGLITAISDWTMLQACQDAATWPAS-----LIISVNIS 671 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + L E ++ ++ + R++L +E +++ + + + + L+ +G+ L++D Sbjct: 672 AIEFRSQRLIERVRQVLLLSGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRLSMD 731 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL PFD +K + S + + + +I+ II + + T+ A+ + Sbjct: 732 DFGTGYSSLNYLRRFPFDGLKIDKSFIDELTQSHEGRSIVEGIINLGHALSMTVTAEGVE 791 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++ L + CD Q + P+ + +L Sbjct: 792 TAEQLEHLQTLMCDEAQGYLLGKPMKLSELLN 823 >gi|188535180|ref|YP_001908977.1| Putative sensory box protein [Erwinia tasmaniensis Et1/99] gi|188030222|emb|CAO98108.1| Putative sensory box protein [Erwinia tasmaniensis Et1/99] Length = 820 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 142/567 (25%), Positives = 250/567 (44%), Gaps = 16/567 (2%) Query: 387 IQHVLATGYFSQGIFSDG-ERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGS 444 I H + + V V D + + + +LG Sbjct: 258 IIHARDLAERNSEKMKSLSQFLDSIVAHIPSCVIVEDAVSGEILLVNSQAERLLGGKPHE 317 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G L + F L + G + E R++ + + + Sbjct: 318 FIGKTS--LNSMSAEMSAYFMQ-LSDATQRKGGVQRNERRLKTSGGDRI-ISCSASIVRG 373 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + IA+D+T+Q+ + E I A DNLT +PNR F LT L + L Sbjct: 374 KDARHSYILLIADDVTDQRAADERIHHMAHHDNLTSLPNRVLFNQYLTRALREDSAAQRL 433 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 V+ +D+D +K +ND LG +GD +L S+ R+ +L+ D LAR G+ F I+L + Sbjct: 434 T-AVLGLDLDNFKNVNDALGHQIGDVLLCSVAVRLRGVLRDRDTLARNGGDEFSIVLPAL 492 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++S + A + ++I P + +++ S+G + +L+ A++A+Y A Sbjct: 493 SHSAEAETVARTLIETIRPPFIVEGHSLSIGLSVGITIAQDDTSSPDYLLRCADMALYAA 552 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N E F + ++ DL A+ +L L Y PI EIVG EAL+ Sbjct: 553 KRNGRNRFEHFTKEMGEMAQRRRIVENDLREAITTGQLRLYYQPITNNQHCEIVGYEALM 612 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G I +F+ IAEE +I + + L R+ SW + + +N++ Sbjct: 613 RWHHPEKGVIMPLDFIPIAEETGLIHNLGAYALYEACREAASWPGEQ-----MVAVNLSP 667 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L ++ + ++ +P R+++ +ESV++ N ++ +L L+ +G+ + LDD Sbjct: 668 LQFKSSALIAVVEGALKESGLAPHRLEVEITESVLLDNTMKNIDVLRDLKALGVHIALDD 727 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL PFD +K + S + + R AI+R+I M+++++ I A+ + Sbjct: 728 FGTGYSSLSYLRSFPFDKIKIDKSFINDMQDSREALAIIRAITGMSRSLDIQITAEGVES 787 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFN 947 + L GC Q + P Sbjct: 788 IEQFQRLKDEGCTLFQGYYFGRPQPSE 814 Score = 60.3 bits (145), Expect = 2e-06, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 7/140 (5%) Query: 397 SQGIFSDGER----QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + D +R L V D ++ D+ V+ G ++ + G + Sbjct: 123 QKRVQRDQQRRDQTFRLLVESVNDYAIYMLDLQGLVVSWNAGACRAKGYSASEIIGQ--H 180 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + DR + GR + E W + I + N +G+++ Sbjct: 181 FSCFYSAQDRLKNLPDTNLHRATLTGRFEDEGWRYRKSGSAFWAHVVIDAIRNDDGELIG 240 Query: 512 YIGIANDITEQKKSLEGILC 531 + I D T+ ++ + I+ Sbjct: 241 FAKITRDCTKVREYEQQIIH 260 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 2/118 (1%) Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 G V+ + + + G + G R++ + D+ + + V Sbjct: 18 GCAVYMLTPDGNVASWSRGAQHAKGYLPAEIVG--RHFSCFYSQQDQSLGQPQIGLKVAR 75 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 GR E D W + I + + +G +L Y I D TEQK+ Sbjct: 76 ESGRYATEGWRYRKDGSAFWAQVVIDAIYDDDGKLLGYAKITRDCTEQKRVQRDQQRR 133 >gi|237654500|ref|YP_002890814.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Thauera sp. MZ1T] gi|237625747|gb|ACR02437.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Thauera sp. MZ1T] Length = 703 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 150/629 (23%), Positives = 274/629 (43%), Gaps = 28/629 (4%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 + M T ++ A I + +++VL + + R + Sbjct: 80 LMVTGMDDTASIEAAFEAGATDFVAKPISWPLLGHRVRYVLRATRAATALRMANARNAAM 139 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + D + D V A G+ S M + LD Sbjct: 140 LDAFPDTLLRLDAADRIVELR---AAPTGVPSCCMPAVGQTLAEAYPHEVATLLAQALDE 196 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 R+ +F + + R+ + +G+ + + DITE+K+ I Sbjct: 197 ARRSRQPS-TVDFPLACRTGRPCHQEARVSAI--DDGE---ALCLLRDITERKEYETRIH 250 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A+ D+LTG+ NR+SFL+RL + + + R V+ +D+D++K IND LG A GD Sbjct: 251 HLAYFDSLTGLANRRSFLERLEREIRRALQN-KWRLAVLFLDLDRFKSINDTLGHAAGDA 309 Query: 591 VLVSLTRRIGELLKFPDILA------------RLSGNRFGIILISENNSLKIADFAIAMR 638 +L R+ + + DI+A RL G+ F ++L + + A +R Sbjct: 310 LLQQAAERLRAITRPGDIVAHDTDRMGTAEFARLGGDEFTVLLPTISRPDDALAIAERIR 369 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 SI P + +E+ VT S+G A + ++ ++K+A++AMY AK G N + Sbjct: 370 ASICAPFAIEGQELCVTTSVGIAVFPDDGEDAATLIKHADIAMYDAKANGRNGCRYYNPA 429 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ RV ++ L A+ + EL L+Y P + + D I +EAL++W P + E Sbjct: 430 LTAEAVHRVELEAGLRRALAHDELVLMYQPQVEVRDGSIATVEALVRWQTPDGRLVPPLE 489 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ AEE +I AI ++L R D W+ + + + +N++ + L + ++ Sbjct: 490 FIPFAEECGLIDAIGSWVLRRACHDAAQWQRRGLD--LRVAVNLSPVQFRASGLLDRIRE 547 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ + R++L +ES +M + + L LR +GI + LDDFGT S LS L + Sbjct: 548 ALADSDLPAERLELEITESALMADDADTHATLAALRTLGIGIALDDFGTGYSSLSCLKRL 607 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S ++G AI+R+I+ +A+++ I A+ + + L + D Sbjct: 608 PLDKLKIDRSFVSGLPDDVDNHAIVRAIVALARHLGFRIAAEGVETAAQAELLGELEADS 667 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKNT 963 +Q + + + L R+P + T Sbjct: 668 LQGYLFSRAVPAAELEALASRRWPPARGT 696 >gi|78485641|ref|YP_391566.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] gi|78363927|gb|ABB41892.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] Length = 891 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 150/614 (24%), Positives = 280/614 (45%), Gaps = 29/614 (4%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-----------QSLAVL 412 + A +G L ++I + F+Q + + + Sbjct: 279 FSLYFYAAIGYLFFLIIYFYQLNKREKTQITEFNQRLTESVHQKTRQLTHQKYFLQNVID 338 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 G D V +D ++GL S S + + + L S Sbjct: 339 GVSDSVVVYDKNLSITMKNKAAEQLIGLTSSSKQYSHGVNENNQNHDYLETVIKCLKSAK 398 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + + + P+ + +G + I + ++IT E + Sbjct: 399 PEKT-----VHHFIDQNQTSRYFEFTVTPLVDGSGQLNSVIQLGHEITNYLDIQEQLQQQ 453 Query: 533 -------AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 A+ D LT +PNR FLDRLT + + + + + ++ ID+D++K+IND G Sbjct: 454 KNDLDFIAYHDPLTDLPNRILFLDRLTQAIHQAQRNHD-KVALLFIDLDRFKEINDSFGH 512 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 A GD VL+ +R+ + ++ D +ARL G+ F I++ + I + + K+++ PI Sbjct: 513 ASGDLVLIECGKRLKKAIREIDTVARLGGDEFTILIDELKTNNVIINVVKKIIKTLSDPI 572 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703 + E +TASIG + + + ++++L+NA+ AMY AK G N + + Sbjct: 573 FVNENIFHITASIGISIFPNDGTDANQLLQNADAAMYQAKEDGKNTYHFYTKEMTEQAYN 632 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R++++ +L A++N + L Y P + + +IVG EAL++W+H + G I F+ +AEE Sbjct: 633 RLLMENNLRDALDNQQFELYYQPQVDITTNKIVGFEALVRWNHEQKGIIPPDHFIPLAEE 692 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I + ++ ++ I W I IN+++K L D+ + ++K Sbjct: 693 TGLIIPLGKQIIAMASQTISEWHQANL-TNARIAINVSAKQLRDSRFFHNLNTALNKNNC 751 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P I++ +ES VM NPE + LL +LR+ GI++++DDFGT S L+YL +P VK Sbjct: 752 QPDWIEIEITESSVMQNPELAIKLLSKLRRKGITISIDDFGTGYSSLAYLKKLPITKVKI 811 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S ++ + I ++II M++++ IIA+ I + + + GC IQ + + Sbjct: 812 DRSFVSNLPQDKDDAEITKAIISMSQSLNLDIIAEGIETQEQQNFVLQEGCKLIQGYYYS 871 Query: 942 SPLGFNSILKLLKE 955 PL ++ L+ Sbjct: 872 RPLTKKAMTAKLES 885 >gi|86751742|ref|YP_488238.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86574770|gb|ABD09327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 904 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 154/624 (24%), Positives = 272/624 (43%), Gaps = 20/624 (3%) Query: 340 LIPAWILIFIWFIGLW--MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397 A + I + R ++ A +++ +++ + Q Sbjct: 288 YSLASLPIVVVTATTTDEALAAWRKQTRLLISAATVSALVVSVILLLIIRQLGKQHQATQ 347 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI- 456 + D +R + A+ + +D + V + GL+ + P ++ I Sbjct: 348 ARLALDKQRLNTAINNMSQGLLLFDAAQRLVVCNQRYIQMYGLSP-EIVKPGCSFRDIIA 406 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H + R +F+ +D + G + E + + I P+ ++ Sbjct: 407 HRHARGSFKGDVDEYCGRIVQAVIVEKTSAVHGSHDRSIQISSVPVPGG-----GWVATH 461 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE+ + E I A D+LT +PNR F RL L + T++ IDID++ Sbjct: 462 EDITERIRDSEKIAYLAHYDSLTDLPNRSLFRQRLERELH--PGRGSAACTLLYIDIDEF 519 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG +GD++L + R+ E + D +ARL G+ F +I S +S + A Sbjct: 520 KSINDTLGHPIGDELLKQVAVRLRECVGASDFVARLGGDEFAVIATSAADSDQATALAER 579 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++I P + L ++ ASIG A +++KNA+LAMY AK G F Sbjct: 580 ILQTIRAPYHCLGHHLSTDASIGIAIAPGDGEDIDQLIKNADLAMYSAKAGGRRTFRFFE 639 Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R ++ DL A+ + + Y PI+ L +EI G EAL++W HP G IS Sbjct: 640 PAMDAIARARRELEFDLRTAIADGGFEIHYQPIVDLRSDEITGCEALLRWRHPTRGMISP 699 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +EF+ +AE+ +I I + L + + W I + +NI+ L + Sbjct: 700 AEFIPVAEDTGLINEIGGWTLAAACAEAVQW-----EQNITLAVNISPVQFRQPTLALLV 754 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++ T R++L +E+V++ + + + L LR +G+ ++LDDFGT S LSYL Sbjct: 755 ASVLGSTGLPAQRLELEVTEAVLIHDDDAALTTLNLLRALGVRISLDDFGTGYSSLSYLQ 814 Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFD +K + + + E AI+ +++ +A + T A+ + L +GC Sbjct: 815 RFPFDKIKIDRAFVENIDTTEGSTAIIEAVVNIAASRSMTTTAEGVETVRQRDILRGLGC 874 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 +Q + + LL ER Sbjct: 875 TQMQGWLFSPAVPAAKFRMLLAER 898 >gi|229182956|ref|ZP_04310189.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] gi|228600580|gb|EEK58167.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] Length = 569 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ D ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ IAEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 362 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFV 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565 >gi|196041809|ref|ZP_03109098.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] gi|196027303|gb|EDX65921.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] Length = 567 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ D ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563 >gi|316933333|ref|YP_004108315.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315601047|gb|ADU43582.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris DX-1] Length = 830 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 138/563 (24%), Positives = 260/563 (46%), Gaps = 19/563 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + E L G+ +W +D + ++ G +R L I Sbjct: 272 SLKKREESFRLLFDGNPMPMWVFDAQTFEFLSVNDAAVAHYGYPRDQF---LRMSLREIW 328 Query: 458 INDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R+ + + + R + + +R AD ++ R + +G + + Sbjct: 329 P--REEWIAHGQTLLEMRDSYQSEGNWRHIKADGSEIHVLTFGRRVVF-DGRDGFLVAVV 385 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D+TE++K+ I A D LT +PNR + RL L + VM +D+D + Sbjct: 386 -DVTERRKAEAKIAHMAHHDGLTNLPNRALYQQRLEQALAQA-RGSGTMVAVMCVDLDLF 443 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G +GD +L + R+ + + D++ARL G+ F I+L S + ++ A Sbjct: 444 KNVNDSFGHPMGDRLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASNLAAR 503 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + ++ P ++ E+ + ASIG A S + +NA++A+Y AK GG F Sbjct: 504 LIEILSAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGGGCHHFFE 563 Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R ++ DL A E L Y P+I L ++ I G E L++W HP+ G IS Sbjct: 564 KEMDRQAQIRRDMELDLRQAFARGEFELHYQPLIDLAEDRIGGFETLLRWRHPERGMISP 623 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 S+F+ +AE++ +I + ++L + + SW + + +N++ L + + Sbjct: 624 SDFIPVAEDIGLIVGLGEWVLRQACLEAASWPS-----DVKVAVNLSPVQFRSRNLVQVV 678 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++++ P R++L +ES+ + + + + L +LR +G+ +++DDFGT S LSYL Sbjct: 679 ISALAQSSLVPHRLELEITESLFLADSDTNLATLHQLRSLGVRISMDDFGTGYSSLSYLR 738 Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFD +K + S + T +AI+R+I + ++++ T +A+ + + L GC Sbjct: 739 SFPFDKIKIDRSFVKDLTERPDCLAIVRAIAGLGRSLDITTLAEGVESVEQLDALRAEGC 798 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 +Q + + I LL Sbjct: 799 HEVQGFLFSPARPASEICGLLTR 821 >gi|126174964|ref|YP_001051113.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella baltica OS155] gi|125998169|gb|ABN62244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS155] Length = 1419 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 131/561 (23%), Positives = 258/561 (45%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 859 QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 916 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 F T + + + + GR E D M + I + + G++ Y+G+ +D Sbjct: 917 E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 972 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L+ +++ +MV+D+D +K+ Sbjct: 973 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1027 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L + RI LL + RL G+ F I+L ++ A A + Sbjct: 1028 INDSLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKNSDISASAAIANRII 1087 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 + + + ++ + SIG + + + +L+ A++AMYHAK GGN + + Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + +++ + Y P + L +I G+EAL++ +HP G I ++ Sbjct: 1148 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPIHGLIPPND 1207 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ ++ + +++ Sbjct: 1208 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFSG-RVAVNLSSRQFALPDIQQRIES 1266 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T ++L +E V+ PE + +++ +L K+G+SL LDDFGT S LSYL Sbjct: 1267 ILRLTKLPACHLELEITEGTVIKQPETAIVVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1326 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1327 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1386 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + LL+E Sbjct: 1387 IQGYIFSKAIKETEFTLLLQE 1407 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 2/154 (1%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 IV+ I + V + +L + I ER L++ GSGD +WDWDI + + Sbjct: 711 AAIVLFISYLVTKTILRRRETQRQIVLSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWG 770 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 L + IH D++ R L+ + +RV+ D+ + W+ Sbjct: 771 A-LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWI 829 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + R + + + + LR G +I++ K+ E Sbjct: 830 LDRAKIVERDEKDNALRMTGTIKNISQFKQKEEQ 863 >gi|119896856|ref|YP_932069.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Azoarcus sp. BH72] gi|119669269|emb|CAL93182.1| GGDEF/EAL/PAS/PAC/GAF-domain containing protein [Azoarcus sp. BH72] Length = 1070 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 155/605 (25%), Positives = 265/605 (43%), Gaps = 20/605 (3%) Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 + + I D+ Q L L Q ++ ER A+ Sbjct: 470 VLGALTIGAARPGDLDQAGTALLKELAEDLAFGIATQRTAVARREAEVALRLRER---AI 526 Query: 412 LGSGDIVWDW---DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 S D V + D P ILG+A + L L Sbjct: 527 ESSSDGVLIFALGDDGPRIRDVNPAAERILGMARALLVDAPAPALTVFAPGALAELGVAL 586 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 V R L+ E AD W + P+ + + + D+TE+ L Sbjct: 587 ---VCGRETHLEVE--GERADGSPFWCECALAPVRAAGD--AHVVCVVKDVTERVLYLRE 639 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LTG+PNR DRL + + + L V ID+D +K +ND +G G Sbjct: 640 LERQAKYDGLTGLPNRYLLDDRLEQAIVAARRHERL-LGVAFIDLDHFKVVNDNVGHRQG 698 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D++L R+ +L+ D AR G+ F ++L + ++ ++A P L Sbjct: 699 DELLRQAASRLAAVLRDGDTAARQGGDEFVVLLPDLGDERDAFRILGRLQAALAEPFRLD 758 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706 +R VT SIG + + +LK+A++AMY AK G N V F ++ DR+ Sbjct: 759 DRSFFVTCSIGVSLYPRDGGDGDTLLKHADIAMYQAKAAGRNVVRFFTAEMNIQVRDRLQ 818 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A+EN EL+L + P + +++G EAL++W HP+ G + F+ +AEE + Sbjct: 819 LEGALRSALENGELHLAFQPQVDGGSGQVIGAEALLRWQHPELGAVPPVRFIPLAEETGL 878 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I ++L R W + I +N++++ +L + ++ +T P+ Sbjct: 879 IGPIGEWVLRAACRQARQWEQAGRR--LRIAVNVSARQFRSPDLPARIAEILDETGLPPA 936 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ES++MG+ E++ +L RL+++G+SL LDDFGT S +YL P DT+K + S Sbjct: 937 LLELELTESMLMGDAEQAEEMLHRLKQLGVSLALDDFGTGYSSFAYLQRFPIDTLKIDQS 996 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + AI+ +II +A ++ +IA+ + + ++L GCD +Q P+ Sbjct: 997 FVRSMVAGVRGEAIVVAIIALAHSLGMRVIAEGVETPLQQRQLFEFGCDELQGYLFGRPV 1056 Query: 945 GFNSI 949 Sbjct: 1057 PAAEF 1061 >gi|26987128|ref|NP_742553.1| sensory box protein [Pseudomonas putida KT2440] gi|24981758|gb|AAN66017.1|AE016230_8 sensory box protein [Pseudomonas putida KT2440] Length = 1247 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 272/580 (46%), Gaps = 12/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + G + + + + + + + V DI + + I G Sbjct: 658 ITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717 Query: 441 AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + ++ R H D + + G Q E + + + + + I Sbjct: 718 SEIEALGQTPRLLASGQH--DSAFYLAMWHQLTAE--GHWQGEIYNKRKNGELYPSWLTI 773 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + NS+ +I ++ + DI+ K + + A D LTG+PNR F +RL +L + Sbjct: 774 SAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQ 833 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + + V+ +D+D++K IND LG VGD +L + +R+ E ++ D +ARL G+ F I Sbjct: 834 VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + A + P E E +ASIG + + S +++NA+ Sbjct: 893 LLPGLHKPSDASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADA 952 Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY +K +G N VE++ + S+R+ ++ +L AVE +E+ L + P + L + +VG Sbjct: 953 AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVG 1012 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EALI+W HP +G + F+ +AEE I + ++LE+ R + +W+ P + Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHY-QPFGPLS 1071 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN+A L L ++ L+ ++L +E+ +M E + +L +L+K+G+ Sbjct: 1072 INLAGAQLRHPHLARRIEQLLKHHQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQ 1131 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L +DDFGT S LSYL +P D +K + S + G AI R+II + ++++ TIIA Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954 + + + + L GC+ IQ V+ PL L+ Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFAAAFLR 1231 Score = 80.4 bits (197), Expect = 2e-12, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 5/168 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + L+ ++ +VI I + + Q + S V I W+ Sbjct: 267 LLVYGLPTVLLLMAVLAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326 Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D +P +LG W +H D + DS R Sbjct: 327 ADANDFTYSYVSPHAEDLLGYPLSDWL-RPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD Q W+ + + +G G+ DI+E K++ + Sbjct: 385 SLDYRVIRADGQPLWVRNIVSMI--EHGHQPVMRGLMIDISETKRTED 430 Score = 55.7 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 8/171 (4%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424 L ++ + Q + + E+ + A S D + Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581 Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + G ++ + ++ +N+R L+ + Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNR----DGFVRDFTC 637 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +R +D Q + RP+ + + + IA DITE+ E + A Sbjct: 638 HIRRSDGQIRLCELSARPLPITG--VDCMLTIARDITERHLMQEKLQLAAT 686 >gi|295699869|ref|YP_003607762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] gi|295439082|gb|ADG18251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] Length = 799 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 120/524 (22%), Positives = 240/524 (45%), Gaps = 10/524 (1%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + + ++ G+ + WL + D + ++ ++E+R+R Sbjct: 262 HVSAGVESVFGITPQELSNRPSAWLDLVVEEDLEPLLAEMNRIASEVSEG-RFEYRIRRP 320 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 D W+ P+ + + +++R +G++ DIT +++ L + A+ D LTG+ NR + + Sbjct: 321 DGCLRWIRSTAYPVCDGSANVVRIVGVSEDITLEQERLAALDHLAYTDGLTGLANRGALI 380 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 + + N+ +M +D+D++K +ND LG D +L + + I L Sbjct: 381 RHMKKLC-----RQNVAFGLMFVDLDRFKVLNDTLGHTAADRLLQDIAKVIQGALPPDAC 435 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 +ARL G+ F +I+ E++ +A A ++ + + VTASIG + + Sbjct: 436 VARLGGDEFAVIVRGESDKATLASLAQSLLNLFSSDVRKDHAAPFVTASIGISIFPEHGR 495 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVES-FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 +L +A++AMY AK G N SS ++ +L A+ +++ L + I Sbjct: 496 DHEALLTSADIAMYAAKKGGRNGFRFADEASSDVLGDFELECNLPTALASNQFVLHFQGI 555 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + G+EAL++W+HP G + F+ I EE I + ++++ + W+ Sbjct: 556 HEPASLAVKGVEALVRWNHPARGLVGPGSFIPILEESGFIVEVGAWVVDAALAQLAVWQA 615 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + + +N++++ L D+ L + + K P +++ +ES +M NP ++ Sbjct: 616 AGKKE-LSMSVNVSARQLRDDSLVAIVDQALRKHRVPPRCLQIELTESALMENPSLAQAT 674 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPM 905 L L+++G+ + +DDFGT S L YL D VK + S A I+R II M Sbjct: 675 LMALKRLGVRIAIDDFGTGYSSLRYLADFSPDIVKIDRSFTARLGRDSAAASIVRGIIQM 734 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + + + A+ + + L GCD++Q + P+ ++ Sbjct: 735 SHELGIKVTAEGVETNQQLHALRDAGCDFVQGFFLTKPMKAENL 778 Score = 47.6 bits (112), Expect = 0.011, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 13/212 (6%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 + G R + L I + + AL L ++ G ++ Sbjct: 39 FLSRYGQRRTIPLPSLCIAVAAGVGIGALVHQ---AASEAATALRVALSMMSGAAGLAIV 95 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMH 446 + L Y Q + S + + D + + + A ++ + + Sbjct: 96 RRKLGLDYARQSAATAL--ASGLLHANRDCLKVLATDGKMLRVSEHGAMLMEAESPEQLS 153 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G +WL + DR L V + W + P++ + Sbjct: 154 G--ADWLAFWTGADRTAAEQALAGAVSGNSTSFTGSC--ATTRGRTKWWNSTLTPVTGDD 209 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 G++ + + D+T+Q E + +D L Sbjct: 210 GEVTALLCASEDVTQQ---SELLKTLRERDEL 238 >gi|192289273|ref|YP_001989878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] gi|192283022|gb|ACE99402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] Length = 879 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 147/619 (23%), Positives = 264/619 (42%), Gaps = 20/619 (3%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 I++ + + R ++ +++ +++ + Q + + D Sbjct: 270 IVMVVTTTTEDALASWRTQTKLMVSVAAVSALVVTVILLLIIHQIGKHHRATQRKLQLDK 329 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHINDRD 462 +R A+ + +D V + GL+ + +R+ L H Sbjct: 330 QRLDTAINNMSQGLLLFDAQARLVICNQRYMEMYGLSPDVVKPGCSLRDVLE--HRKSTG 387 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + +D RL + + P+ ++ D TE+ Sbjct: 388 SLGGNVDKITTDLIDRLSSQRVSEIHSIHDRSIEFSSVPVPGG-----GWVITHEDATER 442 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K+ E I A D+LT +PNR F RL L ++ ++ IDID++K IND Sbjct: 443 KRYDERISYLAHFDSLTDLPNRTMFRQRLENELQRASR--GAPFALLYIDIDEFKSINDT 500 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD++L + R+ + ++ D +ARL G+ F II I + + + + +SI Sbjct: 501 LGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVDRIYESIR 560 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701 +P L +++ ASIG A +++KNA+LAMY AK G F Sbjct: 561 LPYQCLGHQLSTDASIGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFRFFEPEMDAV 620 Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R ++ DL A+ + + Y P + L I G EAL++W HP G IS +EF+ I Sbjct: 621 AKTRRQLEFDLRQAIGDRGFEVHYQPQVDLSSGAITGCEALLRWRHPTRGMISPAEFIPI 680 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE+ +I I + L + +W I + +NI+ L + +++ Sbjct: 681 AEDTGLINEIGAWTLATACSEAATW-----DADITLAVNISPVQFRQPSLALLVASVLGA 735 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 R++L +E+V++ + + + L +LR +G+ ++LDDFGT S LSYL PFD Sbjct: 736 AGLPAERLELEVTEAVLIHDDDAALSTLTQLRALGVRISLDDFGTGYSSLSYLQRFPFDK 795 Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + G E AI+++++ +A T A+ + + L+ +GC +Q Sbjct: 796 IKIDRSFIDGIDTTEGSTAIVQAVVNIAAARRMTTTAEGVETARQREILSTLGCTQMQGW 855 Query: 939 HVASPLGFNSILKLLKERF 957 + + + KLL Sbjct: 856 LFSPAVPAAAFRKLLSSHL 874 >gi|319761288|ref|YP_004125225.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317115849|gb|ADU98337.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 698 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 124/574 (21%), Positives = 253/574 (44%), Gaps = 16/574 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ V Q + ER + + + + + + + G Sbjct: 129 LVLVNDVTERLEAEQAVRQSEERMRKFAEATEEGL-AFHRDGRILDANASLQRMTGYTLA 187 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G R+ +I R L R YE +R D + + + Sbjct: 188 ELVG--RSIFDFIQPEYR-----ALAQEYTRRGREYPYELAMRHKDGHAIPIEAVGKTLP 240 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + + DIT +K++ E A D LT +PNR+ + +L + + Sbjct: 241 QQQDE--YRVVVVRDITARKQAQERARFLALHDPLTQLPNRRHLMLQLARTVATAQERRK 298 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R V+ +D+D +K +N+ LG GD +L + RR+ E +K D +A + G++F ++L Sbjct: 299 -RSAVLFVDLDHFKTVNESLGHEAGDQLLCEVARRLQEGVKATDFVAHVGGDQFVVLLSG 357 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 A A A+ + I + E +++ + S+G + + E+L+ A+ AM Sbjct: 358 LRGRAAAAAAADALIERIRAVYTIGETQLSPSPSVGISVFPDDGYGPDELLRRADAAMQQ 417 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + + + L AV + L L Y P +++ +VGLEAL Sbjct: 418 AKESGRGTRLFYTPDMEGQPAEVLQQEHLLREAVFHDALELHYQPQVQVASGRLVGLEAL 477 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G + +F+ +AE +I I ++L R + +W ++ + + +N++ Sbjct: 478 VRWRHPQRGLVGPDDFIPLAESRGLITPIGRWVLREACRQLKAWHNEGLAL-VPVAVNLS 536 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + ++ + ++ +T P +++ +E+ +M + E +R L L+ +G+++T+D Sbjct: 537 AIEFRQRDVAGEIARVLQETGLEPQYLEVEITETTLMQHAEHTRATLQALQAMGVAVTVD 596 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P D +K + S + + +AI+ +I+ +A++++ +A+ + Sbjct: 597 DFGTGYSSLTYLKRYPLDKLKVDRSFVADTPADGDDVAIVTAIVQLARSLQLQSVAEGVQ 656 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L +GC+ Q +A P+ L Sbjct: 657 TPEQLTLLQSLGCELAQGFGIAPPMDVRRTRAWL 690 >gi|237799947|ref|ZP_04588408.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022802|gb|EGI02859.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 747 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 143/597 (23%), Positives = 273/597 (45%), Gaps = 46/597 (7%) Query: 400 IFSDGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIR 450 + ER L V+ + D + D+ V P I G + G Sbjct: 150 LLGSIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEAEVIGQTP 209 Query: 451 NWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L D ++ + + R ++ E D W+ + I P++N G Sbjct: 210 RILQC---EDTSRETLDVIREALTHWR-PVEVELVNTRKDGSQFWVELSIVPVANEKGWF 265 Query: 510 LRYIGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIP 542 ++ + DITE+K + E + AF D LT + Sbjct: 266 THWVSVQRDITERKESQHLAQRARLEWEEKLALQSRLEERERISEELAYIAFHDELTSLY 325 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR ++ LT + R TV+ +D+D +K +ND +G GD +L + R+ Sbjct: 326 NRAYLMNELTQAFENLDPQYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNC 384 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 ++ D+LAR+ G+ F I+L+ ++ A + + I + ++I ++ SIG + Sbjct: 385 VRSNDVLARIGGDEFAILLMGKDQPETAVRMAERIVSQLHAAIQIEGQDIFISCSIGIVT 444 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSEL 720 S ++L++A++AMY AK +G F S D ++I+ L A+E+ + Sbjct: 445 ACDSHSKPEDLLRDADVAMYSAKKQGRGRWSIFNASMREAAIDTLVIQNALRQALEDKDF 504 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 + Y PI E++VG+EAL++WDHP G IS F+ IAE+L +I + +++ + Sbjct: 505 LVFYQPIYSSDSEDLVGVEALVRWDHPSMGIISPDAFIPIAEDLGIIHELGEWVMNKACS 564 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 ++ +WR + + + +N++ K+L + + +I+ T +++++ +ESV + Sbjct: 565 EVQAWRKAFSHLDLRLNVNVSGKELSHPGFVDQVTRIIAVTGLPATQLQIEVTESVFLYQ 624 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAI 898 P+ +L ++R++G+ + LDDFGT S L Y+ P D VK + S ++ ++ AI Sbjct: 625 PDEIAEILRQIRQLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSEAI 684 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + SI+ + + ++ I A+ + E L +MGC Y Q + P+ ++ +++ Sbjct: 685 VSSILSLGRALDLDITAEGVETEEQYNRLHKMGCPYFQGYFLNRPMRSEALEHVIRS 741 >gi|95929780|ref|ZP_01312521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95134076|gb|EAT15734.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 995 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 139/611 (22%), Positives = 267/611 (43%), Gaps = 12/611 (1%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 I + + + T ++ + Q + S Sbjct: 382 SILFEFTYEHKDGHHFPVEIRSIVIDYRGEPCVLTAVRDISERREKDQRLRE----LSAV 437 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 V S D V D + + + G + + + +L +DR + ++ Sbjct: 438 VDHSNDAVMIMDDSGNVLAVNKTFCDLSGYSEEDLLNRLPLFL-RAERHDRVFYTDLVKQ 496 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 GR + E +R +RI + RY+ ++ D++E+K E +L Sbjct: 497 LRDE--GRWEGEIWIRHHRGHSLPQWLRIETVEEPENKTTRYVAVSADLSEEKAWEEKML 554 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D LTG NR F DRL + + + + V +D+D +K+IND LG GD Sbjct: 555 QLAQTDPLTGSANRVLFRDRLQQAIKRAQSRKGMEVQVFSLDLDYFKRINDSLGHVAGDR 614 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L+ + R+ + + D ++RLSG+ F I++ N+ + A M ++I+ P+ + Sbjct: 615 MLIEVAARLKRVSRGQDTISRLSGDEFAILVTCLNDEVDATRMAQKMLQAISEPMMIDGA 674 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708 E+ +TASIG A + ++ NA+ AM+ AK +G + + F + + I+ Sbjct: 675 ELIITASIGVALYPGDGDDDVTLMANADNAMHQAKRQGRSRMCYFSAELADKAQEYLTIE 734 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 L A+ENSEL L Y P + L +IV EAL++W + G +S + +AEE +I Sbjct: 735 SKLRRALENSELQLYYQPQVDLATGDIVAAEALLRWHSDELGWVSPDRMIPVAEEGGLII 794 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 A+ +++E R I + + I +N++++ L+ + + ++ PS + Sbjct: 795 ALGRWIIEECCRTIRGYHRSSGN-WFPIAVNVSARQFLEPGFTDELVEIVRFYDIPPSLL 853 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +ES+++ + ++ + L G + LDDFGT + L+YL P +K + + + Sbjct: 854 ELELTESMMLDDVGKAIETMKALSFKGFKIALDDFGTGYTSLAYLKQFPVSKLKLDRAFV 913 Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 T AI +++ + + +++A+ I + + L MG + Q + PL Sbjct: 914 TDVHRDVNDAAIAEALVTFTRVMGLSLVAEGIEESVQHECLNLMGFRFGQGYLFSRPLPK 973 Query: 947 NSILKLLKERF 957 + + LL+ + Sbjct: 974 DQFISLLETKL 984 Score = 68.4 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 51/160 (31%), Gaps = 6/160 (3%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 L+ +VIL L + + + S D + ++ + + Sbjct: 282 TLIQLVILDITEQYHSQLKLKELQEELERSLDEYRTLFDYSVDGLTVRNLNGELLLCNKS 341 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 +LG ++ ++ ++ + + + +EF D Sbjct: 342 YEEMLGRTFAELNHQ--HFTKLCDPQEKSALSEKYREALEGK--SILFEFTYEHKDGHHF 397 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + IR + + G+ + DI+E+++ + + + Sbjct: 398 PVEIR-SIVIDYRGEPC-VLTAVRDISERREKDQRLRELS 435 >gi|313496751|gb|ADR58117.1| Sensory box protein [Pseudomonas putida BIRD-1] Length = 1247 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 272/580 (46%), Gaps = 12/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + G + + + + + + + V DI + + I G Sbjct: 658 ITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717 Query: 441 AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + ++ R H D + + G Q E + + + + + I Sbjct: 718 SEIEALGQTPRLLASGQH--DSAFYLAMWHQLTAE--GHWQGEIYNKRKNGELYPSWLTI 773 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + NS+ +I ++ + DI+ K + + A D LTG+PNR F +RL +L + Sbjct: 774 SAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQ 833 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + + V+ +D+D++K IND LG VGD +L + +R+ E ++ D +ARL G+ F I Sbjct: 834 VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + A + P E E +ASIG + + S +++NA+ Sbjct: 893 LLPGLHKPSDASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADA 952 Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY +K +G N VE++ + S+R+ ++ +L AVE +E+ L + P + L + +VG Sbjct: 953 AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVG 1012 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EALI+W HP +G + F+ +AEE I + ++LE+ R + +W+ P + Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHY-EPFGPLS 1071 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN+A L L ++ L+ ++L +E+ +M E + +L +L+K+G+ Sbjct: 1072 INLAGAQLRHPHLARRIEQLLKHHQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQ 1131 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L +DDFGT S LSYL +P D +K + S + G AI R+II + ++++ TIIA Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954 + + + + L GC+ IQ V+ PL L+ Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFAAAFLR 1231 Score = 80.4 bits (197), Expect = 2e-12, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 5/168 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + L+ ++ +VI I + + Q + S V I W+ Sbjct: 267 LLVYGLPTVLLLMAVLAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326 Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D +P +LG W +H D + DS R Sbjct: 327 ADANDFTYSYVSPHAEDLLGYPLSDWL-RPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD Q W+ + + +G G+ DI+E K++ + Sbjct: 385 SLDYRVIRADGQPLWVRNIVSMI--EHGHQPVMRGLMIDISETKRTED 430 Score = 55.7 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 8/171 (4%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424 L ++ + Q + + E+ + A S D + Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581 Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + G ++ + ++ +N+R L+ + Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNR----DGFVRDFTC 637 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +R +D Q + RP+ + + + IA DITE+ E + A Sbjct: 638 HIRRSDGQIRLCELSARPLPITG--VDCMLTIARDITERHLMQEKLQLAAT 686 >gi|120609840|ref|YP_969518.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120588304|gb|ABM31744.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] Length = 1120 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 140/574 (24%), Positives = 259/574 (45%), Gaps = 13/574 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 V + + + R + V D+V+ D ++ P LG + Sbjct: 530 AVDVTEQKHLALELSQQRSRLASLVNAIPDVVFLKDAAGRYLSCNPVFERYLGRRERDIV 589 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G + + R + + + + + E A D + P+ + + Sbjct: 590 GLGDE--ELMTPVEAARVRQLDERAMAAWQPLVYEETLTFAEDGYAGYFETIKTPIRDMH 647 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G + + ++ DIT++KK+ + I AF D LTG+PNR+ LDRL ++ L Sbjct: 648 GHVTGLLSVSRDITDRKKAEQQIELLAFFDALTGLPNRRLLLDRLQRAGAACQRNEKL-G 706 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ ID+D +K +ND LG +GD +LV + +R+ E ++ D +AR G+ F ++L + Sbjct: 707 ALLFIDLDNFKDLNDTLGHDMGDRLLVQVAQRLQECVRTSDTVARFGGDEFVVMLEGLDA 766 Query: 627 SLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 A + + P + ++ T SIG + + T E+LK A+LAM Sbjct: 767 DTALAALQAEQVAEKLLAQLNRPFEMGAQQHYSTPSIGITLFGDQRRTVDELLKRADLAM 826 Query: 682 YHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F ++ DL + EL + PI+ + G E Sbjct: 827 YQAKAAGRNTQRFFDPDMQAQVTARSQLESDLRQGIARHELTVHLQPIVDGST-RLCGAE 885 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W HP G IS ++F+ +AEE +I + +L+ ++ W I +N Sbjct: 886 ALVRWRHPVKGLISPADFIPLAEETGLILPLGRQVLQTACEQLVRWATHPATASFTIAVN 945 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++++ + + ++ T +P R+KL +ES+++G+ E + + +L+++G+ Sbjct: 946 VSARQFRQPDFVAEVLGTLAGTGANPQRLKLELTESLLLGDVEDTICRMAQLKRVGVGFA 1005 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S LSYL +P D VK + S + + AI+R+I+ +AK+++ ++A+ Sbjct: 1006 LDDFGTGYSSLSYLKRLPLDLVKIDQSFVRDVLTDPNDAAIVRTILALAKSLDLQVVAEG 1065 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + L GC+ Q P+ + + Sbjct: 1066 VETAGQLSFLKLHGCEGFQGYLFGRPVPLEAFER 1099 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 84/268 (31%), Gaps = 20/268 (7%) Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK----- 332 W + + + A + L S L +++GM+ Sbjct: 151 WALVSALASLAIAWTATTDVPRDWLVAAGHAPLRIAALVSGTLMALSACLFYGMRQRRTD 210 Query: 333 ----GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL--VGGLVLIVILIGFTV 386 + R + A + + + + + ++ AL G +L + + Sbjct: 211 ASVKRHGRRRTMAAAAVSMAAAQFLMAVPPERFYWARMLAHALHVAGYALLFQAVFIAGI 270 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGD-----IVWDWDIVRDRVTTTPDIATILGLA 441 + R L D +V + D R V + ++G++ Sbjct: 271 RMPYARLREAESRLRESESRLQLLGRNLPDSVPYQMVREPDGRRRFVHMGEALERLVGVS 330 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + + I DR + D G + R+R D W+ + P Sbjct: 331 AADVMEDAQRLFDRIDPEDRA-AQAEADEVSYRTMGVGESVVRMRRMDGAPRWIRLSSSP 389 Query: 502 --MSNSNGDILRYIGIANDITEQKKSLE 527 + +G ++ + G+ D+T+Q+++ + Sbjct: 390 RLLQGGSGRVI-WDGVLTDVTQQREAQD 416 Score = 49.2 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 17/146 (11%) Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP---- 448 +Q + E + + + + D + P A L + G Sbjct: 411 QREAQDLSRAHEIQLASLLGRMPGGISRLDRDLRILYVNPSQAQWLRRTPQELEGQRASD 470 Query: 449 --IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 L +H + + R + +++R + I P + + Sbjct: 471 VLSAELLQSLHP--------HMLQALQGR--PVVFDYRSPYRGAGPEFFHTTIIPETGPD 520 Query: 507 GDILRYIGIANDITEQKKSLEGILCN 532 G ++ + A D+TEQK + Sbjct: 521 GRVVAIMVFAVDVTEQKHLALELSQQ 546 >gi|238753064|ref|ZP_04614518.1| Sensory box-containing diguanylate cyclase [Yersinia rohdei ATCC 43380] gi|238708721|gb|EEQ00985.1| Sensory box-containing diguanylate cyclase [Yersinia rohdei ATCC 43380] Length = 853 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 143/590 (24%), Positives = 272/590 (46%), Gaps = 17/590 (2%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + L L L+ + + + ER + D +W+ D Sbjct: 272 VAIILGLTGWLVLRRTMSEARIADKNKAALMASEERFRHVAESATDWLWETDADLRITYL 331 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAAD 489 + TI GLA+ G + L D R+ L + R LQ + +A Sbjct: 332 SQRFLTITGLAAEQWLGRKLDSLLNC---DIIPLRSWLQYTHQTESRNELQCTY--LSAK 386 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 I +P+ +G+ + + G A+DIT + K+ E I + D LTG+PNR Sbjct: 387 GDKRICRIYAKPII-KDGETVGFRGTASDITREIKAQERIQHLSLHDALTGLPNRLRMKQ 445 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 L L A + ++ +D+DK+K +ND G GD VL ++ R+ L+ D++ Sbjct: 446 FLENKLLNLAGTSH-PLVILNVDLDKFKPVNDTFGHVTGDLVLHQVSERLRGCLRDQDLV 504 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 AR G+ F +I+ ++ +I + I P + E++I + ASIG A I Sbjct: 505 ARQGGDEFILIITGLSSIQEIEQLCARVIAQIESPYIINEQDIYIGASIGIALAPQDSIH 564 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727 + E+L+ A++AMY AK+ G N + ++ L A++++E L Y P Sbjct: 565 AEELLRFADIAMYEAKNSGRNRWSFYSSEMNDRLMQRSELERFLRQAIKHNEFCLYYQPR 624 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 R+ ++ G EAL++W+HP G + +F+ +AEE +I +I+ + + + +D +W Sbjct: 625 YRIEGTQLTGAEALVRWNHPVLGLLMPDQFIALAEETGLITSISDWTMLQACQDATTWPQ 684 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + + +NI++ + + L E ++ ++ T R++L +E +++ + + + Sbjct: 685 S-----LIVSVNISAIEFRNQRLIERVRQVLLLTGLPSHRLELEITERIMIEDADGAFKT 739 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905 + L+ +G+ L++DDFGT S L+YL PFD +K + S + + ++I+ II + Sbjct: 740 MMALKTLGVRLSMDDFGTGYSSLNYLRRFPFDGLKIDKSFTDELAESPEGLSIVEGIINL 799 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + T+ A+ + E + L + CD +Q + P+ + + L++ Sbjct: 800 GHALSMTVTAEGVETEEQLTCLQTLMCDEVQGYFLGKPMKLDDLSMLIRS 849 >gi|308048095|ref|YP_003911661.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ferrimonas balearica DSM 9799] gi|307630285|gb|ADN74587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ferrimonas balearica DSM 9799] Length = 1465 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 131/565 (23%), Positives = 253/565 (44%), Gaps = 18/565 (3%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + + A+ + + V D P IL + G + Sbjct: 905 AHRRLEEEHGLYAQAIENTAEGVVILDHQLMVQGCNPAAEMILATPRARLMGDRFH---- 960 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H R+ + V Q E +R + + + + I PM + + + + Sbjct: 961 -HYWYREQGPQL--DAVTRGNASWQGEVLLRGSAGETVPVWLNISPMGD---NARHLVAL 1014 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DITE+K++ + A D LTG+PNR F RL + + +M +D+D+ Sbjct: 1015 FSDITERKRAELELRRLADFDPLTGLPNRSQFNTRLHAAV-QARGPGGRPMALMFLDLDR 1073 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND G + GD +LV +R+ L+ ++L R G+ F +++ ++ A Sbjct: 1074 FKHINDTYGHSTGDGLLVQAAQRLKGLMGDSELLCRFGGDEFIVLISEFRTRAELERLAQ 1133 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +IA P L + V+ S+G A + ++++A+LAMYHAK G + Sbjct: 1134 RVLSAIAEPFELDGQLFYVSTSVGIACFPDDAQQPETLIRHADLAMYHAKEEGRGRYSFY 1193 Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + ++ ++ L A+E ++L L Y P + L ++ G+EAL++W + G + Sbjct: 1194 TPQRDAQATYQLELENALRQALEANQLELHYQPQVDLQTGQVTGVEALLRWFDEENGAVP 1253 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AE +I ++ + L + + + W I + +N+++ + + Sbjct: 1254 PDTFITLAESSGIIVKLDRWALRQACQSFVRW---GLGDGIKLSVNVSASHFHQPDYVDF 1310 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++++T S++ L +E V+M ++ L LR++G+S+ +DDFGT S L+YL Sbjct: 1311 VSRVLTETGLPASQLCLEITEGVLMKRVSLAQSHLHALRRLGVSVAVDDFGTGYSSLAYL 1370 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 D++K + S + AI RSI+ M +N+ ++A+ + E L G Sbjct: 1371 SQFAVDSLKIDRSFVHDLPGNLTNGAITRSILDMGRNLGLQVVAEGVETEEQEAFLRHQG 1430 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 C +Q A P+ + L+ER Sbjct: 1431 CARMQGFRYARPMNAEACCLWLQER 1455 Score = 89.6 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 7/184 (3%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412 +M ++ ++ LV ++L + V F+ + +R LA+ Sbjct: 738 VSFMVNQHWWQSEPVKALAGSALVAFLMLGLLQRQRQVRRIRQFNTELSQSQQRLHLALS 797 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSF 471 W+WD +R + LG + IH +DR Sbjct: 798 AGRSDTWEWDKASNRFRL-ENHQRCLG---EDDEPRLLEMNQMTIHPDDRLRVWRAWREH 853 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKKSLEGI 529 E+R ++ W+ + + NG R +GI +D+T ++ E Sbjct: 854 YLGLSEHYDVEYRQADLQGRWRWIWAAGKAVERDERNGQARRVVGIYSDMTAHRRLEEEH 913 Query: 530 LCNA 533 A Sbjct: 914 GLYA 917 >gi|119476537|ref|ZP_01616888.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like [marine gamma proteobacterium HTCC2143] gi|119450401|gb|EAW31636.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like [marine gamma proteobacterium HTCC2143] Length = 642 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 128/585 (21%), Positives = 244/585 (41%), Gaps = 13/585 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V + + ++ + ER + SG +W+ ++ + +P +A I Sbjct: 61 VADRTAALTAARDRSEEGARQLERVNERFARVAEASGAGIWEINLQTKEIYCSPKLARIF 120 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + ++N+ + + + E ++ D HW + Sbjct: 121 GYSVAETTYRLKNY-HLFKGAGSEEVNKQFGR-INISSTPVDLECQIVVGDGSSHWFKLN 178 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 ++NG LR G DI E K+ + A D LT + NR F + L + S Sbjct: 179 ALMHKDNNGKPLRLTGAFFDINETVKNRLLVEHMATHDTLTKVANRALFNENLERAIKES 238 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 N V + D++ +K+IND G GD +L + + + +ARL G+ F Sbjct: 239 KES-NELFCVAIADLNSFKEINDNYGHVAGDQLLRHVADSMQSAVGNTGTVARLGGDEFA 297 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 +IL N+ + + PI + EI + S+G +++ + + ++A+ Sbjct: 298 VILRDTKNAENVRKICEKIVAQCTKPILHDDAEINIHISLGVSTYPTDGRNIFNLTRHAD 357 Query: 679 LAMYHAKHRGG----NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 LAMYH K G S + + IK D+ A+E + L Y P ++ Sbjct: 358 LAMYHGKKAGNNESSCCFFSSEIDAKDRAAREIKVDIRRAIERQDFILHYQPKYNILTNR 417 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + G+EALI+W EF+ AEE +I ++ ++++ R W Q I Sbjct: 418 VEGVEALIRWPREDGSFTPPDEFIPHAEESGLINELSAWIIDEGCRQAAEWHRQG--LAI 475 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN--PERSRLLLGRLR 852 I +N++ + +L QA + I + +E+ + + ++ L L Sbjct: 476 PIALNMSPVQFANGDLPYIFQAALRHHSLPGEMIGIEITENCFIEDENLGQTNNQLKILN 535 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 ++GI +++DDFGT S LSYL +P +K + S + + + AI+ +II ++ + Sbjct: 536 ELGIEISIDDFGTGYSSLSYLHQLPIQVIKIDRSFIAQLFVSAEGTAIVDAIIKLSHALG 595 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 T++A+ + + + L C+ Q + + L IL+L+++ Sbjct: 596 KTLVAEGVETKEQLAWLREKKCESAQGYYFSPALSPVKILELVQQ 640 >gi|187920304|ref|YP_001889335.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans PsJN] gi|187718742|gb|ACD19965.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phytofirmans PsJN] Length = 1059 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 161/586 (27%), Positives = 272/586 (46%), Gaps = 13/586 (2%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTT 431 +L + F VL I S +R L S + + D R VT Sbjct: 472 AMLSARRLAFQGRDAVLTAFTPINQIKSMEQRLELWGKVFEASSEAILILDAQRRLVTAN 531 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 G + + G +L H+ D ++DS R+ E VR Sbjct: 532 ASFYRATGYRADDVAGKEPAFLSGAHVQG-DLLAAVIDSV--DRQSAWHGEANVRRRAGS 588 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + I + + + YI DIT++KKS I A D LT +PNR F+ RL Sbjct: 589 DYPAWLMISAVRDRRASLSHYICTLIDITDRKKSEARIQFLAEHDLLTELPNRALFMKRL 648 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 +LD + D+ R V+ ID+D++K +ND LG +GD +L S++RR+ ++ D ++R Sbjct: 649 RAVLDHARVADH-RVAVLFIDLDRFKHVNDSLGHHIGDSLLRSVSRRLVRAVRADDTVSR 707 Query: 612 LSGNRFGIILISENNSLKI-ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 LSG+ F IIL + + ++ + + P L + V+ S+G A + Sbjct: 708 LSGDEFTIILNGVSGAAEVGRTIEDRLLPLMRQPHELDGMALPVSCSVGVALFPDDGEDI 767 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPII 728 +++NA+ AMY AK G N V+ F R ++ L A+ E L Y P I Sbjct: 768 ETLMQNADAAMYQAKGAGRNLVKFFTPDMAERALHRAQLEASLRNAIAMDEFRLEYQPCI 827 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 E+V +E L++W +P+ G +S +EF+ IAEE +I ++ +++E+ R I W D+ Sbjct: 828 DARTGELVAVEGLLRWHNPRLGKVSPAEFIPIAEESRLIISMGAWVIEQACRQIAEWNDE 887 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 P+ + IN+++ L D L + + + +P R++L +E+V+M + E + Sbjct: 888 GLA-PLRVSINVSAIQLRDPNLIGMLATSLERNRVAPERLELEITETVLMDSAEHYESTV 946 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 +RK+GI L+LDDFG S LSYL P D +K + + + +AI+R+II + Sbjct: 947 AGIRKLGIKLSLDDFGVGYSSLSYLNRFPLDRLKIDRAFVKDMLDAPADLAIIRAIIELG 1006 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + ++A+ + E + L +GCD +Q + L + Sbjct: 1007 HELGLRVVAEGVESEHQAQILRNIGCDELQGFLFSPSLSPADLGSW 1052 >gi|241765936|ref|ZP_04763864.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] gi|241364109|gb|EER59329.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] Length = 1020 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 139/577 (24%), Positives = 254/577 (44%), Gaps = 13/577 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 V Q + R S D W+ D V L Sbjct: 446 RVRTFADVTDYLGTLQALRESEARWRSLTHLSSDWYWEQDADFRFVRFDGSAERAQNL-P 504 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 MH + W H + + +E + +D W+ I P+ Sbjct: 505 DEMHYGLARW-ELPHTAVAEGQWRKHRQQLEAHEVFHDFEMQRTTSDGTVVWVSISGEPI 563 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 ++ G Y G+A +ITE+K + I AF D LT +PNR+ LDRL L A ++ Sbjct: 564 FDAEGRFTGYRGVARNITERKAAEAEIRRLAFYDELTALPNRRLLLDRLAHATALCAREE 623 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + ++ +D+D +K IND LG GD +LV + RI ++ D +AR+ G+ F ++L Sbjct: 624 H-HGALLFLDLDNFKAINDTLGHEWGDRLLVQVAARIQACVRAADTVARMGGDEFVVVLQ 682 Query: 623 SENNSLKIADFA-----IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 + + A + ++ P + R++ T SIG A + ++ E+L+ A Sbjct: 683 GLHGAAPEAAAEAEAVAQKIIGALNDPFQVGNRDVHSTPSIGIALFRDAQEPVHELLQRA 742 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK G N + F + + ++ D+ A++ +E L Y P++ ++ Sbjct: 743 DMAMYQAKALGRNTLCFFDPAMQAAASARSALEGDIRQALQRNEFLLHYQPVVNEA-GDM 801 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G EAL++W HP+ G + EF+ +AE+ +I + ++ + W Sbjct: 802 LGAEALVRWQHPQRGMVPPGEFIALAEQTGLILPLGRRVMRMACDQLAQWARDPRTAGWS 861 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+++++ + + + ++ S R+KL +ES+++ + E S L + LR +G Sbjct: 862 VAVNVSAQEFRHPQFVAQVLETLRESGASAHRLKLELTESLMLHDVEDSILKMQALRTVG 921 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913 + +LDDFGT S L YL +P D +K + S + + AI +I+ +A ++ + Sbjct: 922 LGFSLDDFGTGYSSLGYLKRLPLDQLKIDQSFVRDVLTDPNDAAIACTIVALAHSLGLEV 981 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 +A+ + E L R GC Q P +++ Sbjct: 982 VAEGVETEGQRAFLLRNGCRQFQGYLWGRPGPAEALV 1018 >gi|330821779|ref|YP_004350641.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3] gi|327373774|gb|AEA65129.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3] Length = 1065 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 272/563 (48%), Gaps = 11/563 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E + S + + D R +T G + + G + N++ + Sbjct: 499 MEQRLELWAKVFEASSEAILILDSERRLLTANASFYRATGYRAEKISGTLPNFVLASGSD 558 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + L + V E VR + + I + + +G + YI DI Sbjct: 559 --QPLMSRLAALVD-ISSVWNGEAVVRRRAGGDYPAWLMISAVRDKHGAVSHYICTLIDI 615 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++KKS I A D LT +PNR F RL T ++ + ++ R V+ ID+D++K I Sbjct: 616 TDRKKSEARIQFLAEHDVLTELPNRALFTRRLGTAIEQA-RHNDSRLAVLFIDLDRFKDI 674 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI-AMR 638 ND G GD +L S+++R+ + ++ D ++RL G+ F ++L ++ +A + Sbjct: 675 NDTFGHHAGDGLLRSVSQRLLQSVRAGDTVSRLGGDEFTVLLGGAGSAADVAHLLDERLL 734 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + + V SIG A + +++NA+ AMY AK G N V+ F Sbjct: 735 PLMQEPHQIGGMTLQVACSIGIALYPDHGEDIETLMQNADAAMYRAKSGGRNLVKFFSPE 794 Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ L +VE EL+L Y P ++ ++++ +EAL++W HP G + S+ Sbjct: 795 MAESVRHRLELETHLRTSVERRELWLEYQPCVQAATDQLLSVEALLRWKHPHLGMVPPSQ 854 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQ 815 F+ IAEE +I I ++++ R I WR P I + IN++ L D+ +L + ++ Sbjct: 855 FIPIAEETRLIVPIGAWVIDEACRQIARWRAAGL-PEIRVSINLSVVQLRDDAQLVDKLR 913 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ P ++L +E+V+M + + + +R +G+ L+LDDFGT S LSYL Sbjct: 914 DGLTAHDVKPDSLELEITETVLMESVDHYLDTVNEIRALGVKLSLDDFGTGYSSLSYLHR 973 Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + + + G + +A++R+I+ + + ++A+ + + L R+GCD Sbjct: 974 FPLDRLKIDRAFVNGRLDALADLAVIRAIVELGHELGLRVVAEGVEQAHEANALKRIGCD 1033 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 +Q + A P+ ++ + L+ R Sbjct: 1034 ELQGFYYARPMSNEALEQWLRTR 1056 >gi|292489731|ref|YP_003532621.1| heme-regulated cyclic AMP phosphodiesterase [Erwinia amylovora CFBP1430] gi|292898061|ref|YP_003537430.1| signal transduction protein [Erwinia amylovora ATCC 49946] gi|291197909|emb|CBJ45010.1| putative signal transduction protein [Erwinia amylovora ATCC 49946] gi|291555168|emb|CBA23365.1| Heme-regulated cyclic AMP phosphodiesterase [Erwinia amylovora CFBP1430] Length = 818 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 138/529 (26%), Positives = 242/529 (45%), Gaps = 14/529 (2%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + + +LG + G + F L + G + E Sbjct: 294 VSGEILLINNRAEQLLGGSQCEFIGKKAQ--ECMTPAMSAYFMQ-LSDAAQRKGGVQRNE 350 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 ++ + + + + + IA+D+T+Q+ + I A DNLT +P Sbjct: 351 RQLATSGGDRI-ISASASMVRGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 409 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F LTT L D V+ +D+D +K +ND LG VGD +L S+ R+ + Sbjct: 410 NRVLFNQHLTTAL-REDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSV 468 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L+ D LAR G+ F I+L ++ + A + ++I P + +++ SIG Sbjct: 469 LRNRDTLARNGGDEFSIVLPGLSHPEEAEAMARRLIETIRPPFTVHGHNLSIGLSIGITL 528 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720 + +L+ A++A+Y AK G N E F + R +I+ DL A+ +L Sbjct: 529 AQHGMTSPDYLLRCADMALYAAKRNGRNRFEHFTKAMGDTAQKRRIIENDLREAITYRQL 588 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y PI EI+G EAL++W HP+ G I EF+ IAEE +I ++ + L R Sbjct: 589 KLYYQPITNNQHREIIGYEALMRWHHPEKGIIMPLEFIPIAEETGLIHSLGTYALYEACR 648 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + SW + + +N++ ++ L ++ + ++ +P R+++ +ESV++ N Sbjct: 649 EAASWPGEQ-----TVAVNLSPLQFKNSALIAVVEGALKESGLAPHRLEVEITESVLLDN 703 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898 + +L L+ +G+ + LDDFGT S LSYL PFD +K + S + + R AI Sbjct: 704 TLANIDILRELKALGVQIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMQDSREALAI 763 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 +R+I M+++++ I A+ + + L GC Q + P Sbjct: 764 IRAITGMSRSLDIQITAEGVESNEQFQRLKAEGCTLFQGYYFGRPQPPE 812 Score = 52.6 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 3/123 (2%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 L V G D ++ D+ + G + G ++ + DR + Sbjct: 135 FRLLVEGINDYAIYMLDLNGLVLNWNAGACRAKGFTCNEIIGK--HFSCFYSEQDRRHNL 192 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + G + D W + I + N G+++ + I D TE ++ Sbjct: 193 PDKNLQQATATGHFEDNGWRYRKDGSAFWAHVVIDAIRNDGGELIGFAKITRDCTEMREY 252 Query: 526 LEG 528 Sbjct: 253 ERQ 255 Score = 39.9 bits (92), Expect = 1.9, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 2/119 (1%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 SD Q LA ++ D + + G + G RN+ + D+ Sbjct: 5 SDVVYQLLARSEGNCAIYMLDPEGIVASWSLGAQHAKGYLPAEIIG--RNFSCFYSQQDQ 62 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + V GR + D W I + + NG +L Y I + T Sbjct: 63 MLGKPRHGLQVAREAGRFATKGWRYRKDGSAFWAHEVIDAVFDDNGKLLGYAKITRNCT 121 >gi|320108512|ref|YP_004184102.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Terriglobus saanensis SP1PR4] gi|319927033|gb|ADV84108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Terriglobus saanensis SP1PR4] Length = 865 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 159/815 (19%), Positives = 327/815 (40%), Gaps = 40/815 (4%) Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFY-----MVNRSSMLIPTFAMAWVV 228 YLW P+ V S L I + ++ F + + + S + A Sbjct: 48 YLWNPHLVALHVVSDLL---IFLSSMAVATTFAVMRFRYRKDIFMGSIFIAFGALFAACG 104 Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF--MYLHWNRWHAKVGYIT 286 L Y+ F L +L L+ + + + + L R + Sbjct: 105 LTYLMDVILFWKPLYSLAGDIKLVAALAAVLTATILPFLAPRLGRLLAKARTSKQNEQYF 164 Query: 287 FSGIACIAILFCMSFYYPMVTASI--ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 + + F + I R A+ + G + + Sbjct: 165 LAVSNSSSDSFYILQSVRNEAKKIVDFRFVFANSNGASLVSSTPAKLVGQLLSTIFPFNR 224 Query: 345 I------LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 + G+ + +++ + + ++ V + A + Sbjct: 225 TDGFFDRYTQVVHSGIPLTEEFPVESADVNATWLRHQIIKVDDGIAITATDISAKKHAEI 284 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH- 457 + + S + ++ P +L + + G +H Sbjct: 285 KLGKTLAFSRSLIDNSPFPILALELDGTIREINPAAERMLEYTNEELAGRATPL--ILHD 342 Query: 458 INDRDNFRTILDSFV--------------GYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ L + R + E+ + I + ++ Sbjct: 343 PDEVARRAAHLSHELGMTVLPDISVFTVHPSRGLIDRQEWTYIRKGGSHVIVEISVTALT 402 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + ++ +A DITE+K + E I A D+LTG+P+R DR+ L + + + Sbjct: 403 DELQKVNGWLCVAYDITERKHTEEYISHLAHHDSLTGLPSRALLNDRMELALKRAHRNSS 462 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +M++DID +K++ND LG +VGD++L+S+ +R+ ++ D +AR+ G+ F +++ Sbjct: 463 -KVALMMVDIDNFKRVNDSLGHSVGDNLLISVAQRLQHTIRETDTVARMGGDEFIVLIDD 521 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + +A P+ + + ++ASIG + +LKNA+ AMY Sbjct: 522 VRSDEEAEKIAEKLVAVMAAPVTINGEQHPISASIGLCLYPEGGGDLDALLKNADEAMYF 581 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + F + R I+ L A+ +E +VY P I ++ G+EAL Sbjct: 582 AKAEGRNMYQIFSKDMASATAKRRTIENALDCALSRNEFDVVYQPQISFQSGKVTGIEAL 641 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W+ GN++ +EF+ +AE+ +I I ++L +D ++ + I +N++ Sbjct: 642 IRWNSKLLGNVTPAEFIPVAEQTGLIVPIGEWVLRTACKDARRLEEKLGH-GLTIAVNLS 700 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L E + ++++ P ++L +E++++ + ++ +L R+R +G + +D Sbjct: 701 PRQFQQENLPEIVSDALAESGLEPKHLELEITENILVNDSRKAMRVLDRVRALGPRIAID 760 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 DFGT S +SY+ D +K + S + TE AI R+II +AK ++ ++A+ + Sbjct: 761 DFGTGFSSMSYILRFNVDRLKIDQSFIRNIMTEPNGAITRAIISLAKGLKINVVAEGVET 820 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L R GCD Q + P+ F I +++ Sbjct: 821 AEMSEILLREGCDEAQGYFYSRPVAFGEIEEVIHR 855 >gi|302555711|ref|ZP_07308053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Streptomyces viridochromogenes DSM 40736] gi|302473329|gb|EFL36422.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Streptomyces viridochromogenes DSM 40736] Length = 714 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 135/575 (23%), Positives = 257/575 (44%), Gaps = 17/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + A G +Q + + R G+ + D+ + + + + G++ ++ Sbjct: 138 LKAQGVVAQALHASEARFRAVFEGAAIGIGMADLEGNILQVNGALLRMFGISEQAL--RS 195 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 RN + + H +D + + V R E D W + + + +++G Sbjct: 196 RNVMEWTHPDDAPQTWRLYEELVRGEREHYHLEKAFYRPDGTVLWTNLTVSLLRDADGAP 255 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + + D TE++ + A D LTG+PNR F +RL L R + Sbjct: 256 QYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTFFFERLEKAL---GAGKGQRFGLC 312 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSL 628 +D+D +K +ND LG A GD +LV + R+ +++ARL G+ F + + Sbjct: 313 YLDLDGFKTVNDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDTQR 372 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 ++ + A + ++ PI++ RE+TV SIG + + +E+L++A++ MY AK G Sbjct: 373 EVDELAARIMNALLAPISVDGRELTVRGSIGIVEGPAGERGPAEVLRSADITMYRAKSAG 432 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 GN E + + L A+E E ++ Y P++ L D + G EAL++W H Sbjct: 433 GNRFELADPEADARAITRHGLTTALPTALERGEFFIEYQPLVHLGDGSVRGAEALVRWLH 492 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM----PPIFILINIAS 802 P+ G + F+ +AE +I + ++LE+ R WR+ P+ I +N++ Sbjct: 493 PQHGVLGPDRFIPLAEHTGLIVPLGRWVLEQSVRQAREWRELHGGAEAVGPLRINVNLSP 552 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L L + ++ +T +P + L +ES ++G + L RL ++G+ + LDD Sbjct: 553 CQLTHPGLVQDTVDILERTGMAPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDD 612 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKD 917 FGT S L+ L +P +K + S + I+ I+ +A +++ + + Sbjct: 613 FGTGYSNLANLRRLPVSILKLDRSFTQSMQQFPADPVDLKIVEGIVSLAHSLDLAVTVEG 672 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + ++L +GCD Q + A P + +L Sbjct: 673 VETGAQAEQLRVLGCDTAQGWYYARPGPPERLHEL 707 >gi|196047149|ref|ZP_03114366.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|196022019|gb|EDX60709.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] Length = 567 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ D ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ IAEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPSEFIPIAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563 >gi|119491612|ref|ZP_01623484.1| hypothetical protein L8106_03494 [Lyngbya sp. PCC 8106] gi|119453341|gb|EAW34505.1| hypothetical protein L8106_03494 [Lyngbya sp. PCC 8106] Length = 624 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 142/534 (26%), Positives = 248/534 (46%), Gaps = 8/534 (1%) Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 V + G +S + G L + L + R + E Sbjct: 89 IVYINAAFTKLTGYSSPEIMGQTPQILQG--PRTDYHVLKRLKQALT-RGQVFEGEAINY 145 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D I P+ N+ G I+ Y+ I +I Q D LTG+ NR Sbjct: 146 RQDGSEFQNHCYIEPIFNNQGQIIYYLSIHREIIPQNPVQTQFSTRNNLDPLTGLANRSL 205 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 L RL +D + + V+++D+D++K IND LG GD +L ++ +R+ ++ Sbjct: 206 LLQRLQQSIDQAQQHPDYLFAVLLLDLDRFKLINDSLGHQAGDHLLTTIGQRLESCIRPT 265 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D++ARL G++F I+L + LK++ A +++ + P+ L +E+ ++AS+G + S Sbjct: 266 DMVARLGGDQFVILLDQVRDLLKVSQVAERIQQYLNKPLTLKNQEVFISASLGIVLSSPS 325 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724 +++++A+ A+ AK G F + R +R+ ++ DL A+++ +L + Y Sbjct: 326 YDHPEDIIRDADTALQQAKAGGKACYTVFDQTMHRHALERLQLENDLRRAIDHHQLQVHY 385 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PII + I G EAL++W HP+ G I + F+ IAEE +I+ I ++L + Sbjct: 386 QPIIAMDTGRITGFEALLRWYHPERGMIPPNYFIPIAEETGLIQVIGQWVLREACQRAKL 445 Query: 785 WRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ P +F+ +N++ L L E + ++++T P +KL +ES + E Sbjct: 446 WQLTFPQSPSLFMSVNLSIHQLTYPNLVEIVSDILTETGCDPRYLKLEITESAIAQKAET 505 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRS 901 +L +L +GI L +DDFGT S LS L Y P T+K + S + ++ I + Sbjct: 506 VIPILEQLTALGIQLCIDDFGTGYSSLSRLYYFPITTLKVDRSFVAAISQSNGTAKIASA 565 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 II +A ++ +IA+ + E + L GC Q H A P LL Sbjct: 566 IINLAHSLGLEVIAEGVETEQQLTILRSWGCQLAQGYHWAKPENSQDTEALLAS 619 >gi|254498558|ref|ZP_05111279.1| sensory box protein [Legionella drancourtii LLAP12] gi|254352205|gb|EET11019.1| sensory box protein [Legionella drancourtii LLAP12] Length = 766 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 149/582 (25%), Positives = 294/582 (50%), Gaps = 16/582 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRD---RVTTTPDIAT 436 IG +I V + +Q + E + A+ S V DI + + Sbjct: 187 IGNEIIGRVYSFRDITQKRMDEDELRIRERAIEASIHGVAIIDISKANFPIIYVNKAFER 246 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWM 495 I G + G L H D ++ R L + R ++ E +R +++ +W Sbjct: 247 ITGYTEKQILGQNLIALRGRHTEDVNHKRITL-AIKEQREEIVEVEGYR---RNDESYWC 302 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 I + P+S+S+ ++ Y+ + NDIT++++ + ++ A D+LT +PNR +DR+ + Sbjct: 303 EISVAPVSDSSANVKHYVCLINDITQRREMEKQLIQQATHDSLTDLPNRVLLIDRVDQAI 362 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + +++ + +D+D++K IND LG ++GD +L +++ R+ D + RL G+ Sbjct: 363 LQARKKNSI-LAFLFLDLDRFKMINDTLGHSIGDKLLQAVSNRLLIATNDFDTVCRLGGD 421 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L + + A + ++I+ P + + ++ +T SIG + + ++K Sbjct: 422 EFVILLQDIGSEKQAQQIADKILRTISKPFPIDQHDLQITGSIGISYFPKDGTDYESLMK 481 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A+L+MYHAK G ++ +++ + + + L +++ E +LVY P+I L + Sbjct: 482 SADLSMYHAKDSGRATYRTYDKEMNTRIINHMQLDNALRDSLKKDEFHLVYQPLINLAEN 541 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +IVG EAL++W G + S+F+ +AEE +I I +++L+ ++ W Sbjct: 542 KIVGFEALLRWHSHILGTVPPSDFIGMAEENGLILEIGMWVLKEACCQLVRWHK-LGYSK 600 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++S+ L + L E ++ + +T SP+ ++L +ES+++ N + S L L+ Sbjct: 601 LTMAVNLSSRQLRQSHLPELIKKTLFETGLSPNYLELELTESLLVDNVKHSIETLYALKD 660 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G L +DDFGT S LSYL P D +K + S ++ E AI R+II + ++ Sbjct: 661 MGAKLVIDDFGTGYSSLSYLKQFPVDKLKIDRSFVSELINKENDAAIARAIINLGHSLNL 720 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++A+ + E+ + + + GCDY Q + PL N + + L Sbjct: 721 DVLAEGVETELQCQFMLKHGCDYAQGYYFTPPLKANELNEFL 762 Score = 39.2 bits (90), Expect = 3.6, Method: Composition-based stats. Identities = 18/177 (10%), Positives = 44/177 (24%), Gaps = 23/177 (12%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 I + + + + + +GD + + Sbjct: 50 WYHNQPEFQRTINAPLSDNINIKADDILEKNIELEKSLSLLRATLESTGDGIMMVNGHGQ 109 Query: 427 RVTTTPDIATILGLASGSMH-GPIRNWLPYI-----HIN----DRDNFRTILDSFVGYRR 476 V + + S + G YI + D + + Sbjct: 110 VVDWNQKFVEMWRIPSYMLESGTESIGFEYILEQLTNPESVITDVEYLY---------KN 160 Query: 477 GRLQYEFRVRA-ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 Q E V D + + + + N +I+ + DIT+++ + + Sbjct: 161 PEWQGELPVLHFKDGRIFERFTQPQRIGN---EIIGRVYSFRDITQKRMDEDELRIR 214 >gi|49476849|ref|YP_034886.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144683|ref|YP_082145.1| sensory box, GGDEF family protein [Bacillus cereus E33L] gi|196035756|ref|ZP_03103159.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|218901822|ref|YP_002449656.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|254722098|ref|ZP_05183887.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055] gi|49328405|gb|AAT59051.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978152|gb|AAU19702.1| sensory box, GGDEF family protein [Bacillus cereus E33L] gi|195991723|gb|EDX55688.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|218539049|gb|ACK91447.1| sensory box/GGDEF family protein [Bacillus cereus AH820] Length = 567 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ D ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ IAEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563 >gi|229089690|ref|ZP_04220951.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] gi|228693589|gb|EEL47291.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] Length = 569 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ D ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCRTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565 >gi|288940811|ref|YP_003443051.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288896183|gb|ADC62019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Allochromatium vinosum DSM 180] Length = 1147 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 135/614 (21%), Positives = 263/614 (42%), Gaps = 16/614 (2%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 IG + + + L +I + V+ E+ L Sbjct: 533 IIGHAGQVLGTVAIYATRVMEPSPADLEMIESAAELAAIVIERDRAENATRQAEEKARLL 592 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT---- 466 + + + ++ D+ P A +LG ++ G + P IH + + Sbjct: 593 LESTTEGIFGLDLEGRVTFINPAAANMLGYEPETLIGQPVH--PLIHHSRANGLPLPPEC 650 Query: 467 --ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 IL + + E + D P+ + I + +DI+ +++ Sbjct: 651 CPILATLQQGQDCHATSEV-LWRRDGSCFPAEYWATPVR-RDHRIEGAVVTFHDISARQR 708 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + I AF D+LTG+PNR F + L L DD R + ++D+D +K +ND LG Sbjct: 709 AEAEIQHLAFHDSLTGLPNRLLFKEELGQALAALRRDDQ-RFALHMLDLDHFKDVNDSLG 767 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 VGD++L ++ R+ + + D+LAR G+ F ++ A A + ++ Sbjct: 768 HPVGDELLRAVAERLTAITRGTDVLARFGGDEFALLQSKIGEIGDAAALATKIIEAFGQA 827 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 + I + SIG + +++ A++A+Y AK G F S + R Sbjct: 828 FWIDGNRIDINTSIGILIADQACHDVDDIITRADVALYKAKEAGRGTHAFFADSMTQQLR 887 Query: 705 VMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ +L A++N EL++ Y P L +VG+EAL++W HP+ G + F+ + E Sbjct: 888 REMEIARELIQAIQNDELFIDYQPQFDLDSGRLVGMEALVRWHHPREGVRQPAAFLPVTE 947 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + +I+ ++ ++L+ I W D+ + +N+ ++ + D + + + A++ +T Sbjct: 948 KRGLIRPLSDWVLKAACCQIRDWSDRGLEFG-RVAVNLCAQQVGDPDFGDNILAVLEQTG 1006 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P ++L F+E+V++ R++ + RL ++GI +DDFGT S + YL D +K Sbjct: 1007 ARPEHLELEFTETVLIAADARTQADIARLSELGIHFAIDDFGTGFSSMQYLRKFRTDKIK 1066 Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + T+ I+++ I + + IA+ + E + L R GC +Q Sbjct: 1067 IDREFIQDVTQDAGDAEIVKATIALGTALGLITIAEGVETEEQAEFLRRHGCRQVQGYLY 1126 Query: 941 ASPLGFNSILKLLK 954 P I + L+ Sbjct: 1127 GRPQSPEDIERQLR 1140 Score = 71.5 bits (174), Expect = 7e-10, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 2/146 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 I + Q + +R V S + + D+ P A +LGL Sbjct: 270 TIAQAASTMIAQRRQAEQALRESEQRFRTLVEVSQYYIQEIDVEGCIQYANPASAHLLGL 329 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + L + ++R L +F + Y R A+ Q + + Sbjct: 330 EPKDLIGRNVSML--LPADERATLLKDLRTFASEQPTPSAYYNRNLTANGQTIDVEVGWN 387 Query: 501 PMSNSNGDILRYIGIANDITEQKKSL 526 + +G + +I IA D+T+ +++ Sbjct: 388 YKRDESGQVTGFISIAKDVTDYQRAR 413 >gi|302551644|ref|ZP_07303986.1| sensory box/GGDEF family protein [Streptomyces viridochromogenes DSM 40736] gi|302469262|gb|EFL32355.1| sensory box/GGDEF family protein [Streptomyces viridochromogenes DSM 40736] Length = 632 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 133/570 (23%), Positives = 266/570 (46%), Gaps = 28/570 (4%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D V+ +AT+LG + + G + L + + Sbjct: 54 YRSVFTAAPLAMAVVDREGTVVSANDALATLLGTSPDELDGSVAADLVDLTSD--TRTWH 111 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + R+ RL+ R++ D W+ + + P+ + + DI+ +++ Sbjct: 112 AYGEVLRGRQSRLRCTRRLKHPDGHSLWVQVTVAPLPAED---RGVLLSVADISGRRELQ 168 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA--TDDNLRPTVMVIDIDKYKKINDVLG 584 + D +T +PNR F +RL+ L+ + R + +D+D +K IND LG Sbjct: 169 ARLRHLQMHDPVTRLPNRTLFFERLSAALEAESYEQSGTGRIGLCYLDLDGFKAINDTLG 228 Query: 585 IAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAM 637 VGD +L ++ R+ ++ARL G+ F +++ + ++A+ A ++ Sbjct: 229 HRVGDRLLAAVAERLTRCADASGQSRTTAPLVARLGGDEFALLVEDSTGTEQLAELAESV 288 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++I P ++ + ++V+ASIG ++ T++ ++++A+ +Y AK G + F Sbjct: 289 LEAIQDPFDISGQRLSVSASIGVVERHAAGTTATALVQDADTTLYWAKADGKSRWTLFDP 348 Query: 698 SSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + L A++ E L Y P++ + D+ + G+EALI+W+HP++G ++ + Sbjct: 349 ERNAHRMTRQALASTLRPAIDRGEFQLEYQPLVGMEDDRLHGVEALIRWNHPQFGVLTPN 408 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AEE I + ++L R W+ D + PPIF+ +N+A + + D++L + Sbjct: 409 RFIGLAEEDGSIVPLGRWVLRTACRQARRWQIDHPDDPPIFVSVNVAVRQVWDSDLVADV 468 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++T +P ++L +ES VMG+ R L L +G+ + +DDFGT S L+YL Sbjct: 469 AETLAETGLAPGLLQLELTESAVMGSAGRPLQALKALSDMGVRIAIDDFGTGYSNLAYLS 528 Query: 875 YIPFDTVKFNGSLMTG-----------STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 +P +K +GS + G ++ ++I +A + T+ A+ + Sbjct: 529 RLPVSVLKLDGSFVRGFQYDDRDTAARPNPADEVVVEAMIQLAHRLGLTVTAECVETSAQ 588 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L +GCD Q + P+ + I +LL Sbjct: 589 ATRLRSIGCDTGQGWLYSRPVPPDRISELL 618 >gi|148256520|ref|YP_001241105.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146408693|gb|ABQ37199.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 822 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 135/562 (24%), Positives = 251/562 (44%), Gaps = 18/562 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + L + + D + + G + + N Sbjct: 265 ALKRREASFRLLFDANPMPMCILDGKTAQILNVNDAMLRHYGYSRADLLC--MNVWDLWP 322 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + L + R AD ++ R + N +G + Sbjct: 323 PGEWGAVDDALTRLADG--DLFHRDCRHCKADGSEIEVLTYGREI-NYDGR-DGVLMAIV 378 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE++++ I A D LTG+PNR+ F RL LD +A V+ ID+D +K Sbjct: 379 DITERRRAEARIAYMAHHDGLTGLPNREFFQQRLAQELDEAA-SGARPLAVLCIDLDLFK 437 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND G +GD +L ++ R+ + + ++ ARL G+ F I+ S++ + +FA + Sbjct: 438 TVNDSFGHPMGDRLLQAVAGRLKQQMHGGNLAARLGGDEFAAIV-SQDGADGSGEFAARL 496 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++ P ++ E+ + ASIG A + E++KNA++A+Y AK GG F Sbjct: 497 ISVLSAPYDIDGNELVIGASIGIALSPLDGTSCEELMKNADMALYRAKQHGGRVHRFFER 556 Query: 698 SS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 R ++ DL A +E L Y P+I + I G E L++W HP G IS + Sbjct: 557 EMDLQAQKRRDMEHDLRRAFAQAEFELHYQPLIDVASNIISGFECLLRWRHPDKGMISPA 616 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AE++ +I + ++L + +W D I + +N+++ L + + Sbjct: 617 EFIPVAEDIGLIVPLGEWVLREACHEAATWPD-----GIKVAVNLSAVQFRSRNLVQVVM 671 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++++ +P R++L +ES+++ + + L +LR++G+ +++DDFGT S LSYL Sbjct: 672 QALAQSSLAPERLELEITESILLAETDANLATLHQLRQLGVRISMDDFGTGYSSLSYLRS 731 Query: 876 IPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + ++ AI+R+I + +++ A+ + + L GC+ Sbjct: 732 FPFDKIKIDRSFVKDLAQRSDCLAIVRAISGLGRSLNIITTAEGVETSEQLDWLRAEGCN 791 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 +Q ++ I LL Sbjct: 792 QVQGYLFSAARPAAEIAGLLAR 813 >gi|304411858|ref|ZP_07393469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|307303374|ref|ZP_07583129.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] gi|304349718|gb|EFM14125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS183] gi|306913734|gb|EFN44156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica BA175] Length = 1419 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 131/561 (23%), Positives = 258/561 (45%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 859 QKEEQLKLFEKAIENISEGMFILDGEYRFVEVNEACCKISLRNRTDFIGNVLTF--DLYP 916 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 F T + + + + GR E D M + I + + G++ Y+G+ +D Sbjct: 917 E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 972 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L+ +++ +MV+D+D +K+ Sbjct: 973 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1027 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L + RI LL + RL G+ F I+L ++ A A + Sbjct: 1028 INDSLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKGSDISASAAIANRII 1087 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 + + + ++ + SIG + + + +L+ A++AMYHAK GGN + + Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + +++ + Y P + L +I G+EAL++ +HP G I ++ Sbjct: 1148 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPVHGLIPPND 1207 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ ++ + +++ Sbjct: 1208 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFNG-RVAVNLSSRQFALPDIQQRIES 1266 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T ++L +E V+ PE + +++ +L K+G+SL LDDFGT S LSYL Sbjct: 1267 ILRLTKLPACHLELEITEGTVIKQPETAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1326 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1327 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1386 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + LL+E Sbjct: 1387 IQGYIFSKAIKETEFTLLLQE 1407 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 2/154 (1%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 V+I I I F +++ +L + I ER L++ GSGD +WDWDI + + Sbjct: 711 VVITIFISFVIVKAILRRRETQRQIVLSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWG 770 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 L + IH D++ R L+ + +RV+ D+ + W+ Sbjct: 771 A-LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWI 829 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + R + + + + LR G +I++ K+ E Sbjct: 830 LDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 863 >gi|167031433|ref|YP_001666664.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166857921|gb|ABY96328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 1247 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 274/580 (47%), Gaps = 12/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + G + + + + + + + V DI + + I G Sbjct: 658 ITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQHISAVNRAFSEITGY 717 Query: 441 AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + ++ R H D + + G Q E + + + + + I Sbjct: 718 SEIEALGQTPRLLASGQH--DSAFYAAMWHQLTDE--GHWQGEIYNKRKNGELYPSWLTI 773 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + NS +I ++ + DI+ K + + A D LTG+PNR F +RL +L + Sbjct: 774 SAVRNSEREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRALFENRLQAVLTCAQ 833 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + + V+ +D+D++K IND LG VGD +L + +R+ E ++ D +ARL G+ F I Sbjct: 834 VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + A + A P E E +ASIG + + + +++NA+ Sbjct: 893 LLPGLHKPSDASTIANKLLACFAAPFQAGEHEFFTSASIGISLYPQDGTDVATLIRNADA 952 Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY +K +G N VE++ + S+R+ ++ +L AVE +E+ L + P + L +++VG Sbjct: 953 AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQKLVG 1012 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EALI+W HP +G + F+ +AEE I + ++LE+ R + +W+ P + Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHY-QPFGPLS 1071 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN+A L L ++ L+ ++L +E+ +M E + +L +L+K+G+ Sbjct: 1072 INLAGAQLRHPHLARRIEQLLKHYQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQ 1131 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L +DDFGT S LSYL +P D +K + S + G AI R+II + ++++ TIIA Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954 + + + + L GC+ IQ V+ PL + L+ Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPDEFAAAFLR 1231 Score = 79.6 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 5/168 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + L+ ++ +VI I + + Q + S V I W+ Sbjct: 267 LLVYGLPTVLLLMAVLAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326 Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D +P +LG W +H D + DS R Sbjct: 327 ADANDFTYSYVSPHAEDLLGYPLSDWL-RPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD Q W+ + + +G G+ DI+E K + + Sbjct: 385 SLDYRVIRADGQPLWVRNIVSMI--EHGHQPVMRGLMIDISETKHTED 430 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 8/171 (4%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424 L ++ + Q + + E+ + A S D + Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581 Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + G ++ + ++ +N+R L+ + Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVEQLNR----DGFVRDFTC 637 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +R +D Q + RP+ + + + IA DITE+ E + A Sbjct: 638 HIRRSDGQIRLCELSARPLPITG--VDCMLTIARDITERHLMQEKLQLAAT 686 >gi|226946907|ref|YP_002801980.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii DJ] gi|226721834|gb|ACO81005.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii DJ] Length = 553 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 135/548 (24%), Positives = 258/548 (47%), Gaps = 13/548 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468 + + V D + V I G + G + L H D + +R + Sbjct: 1 MFDSTLEGVLVTDANQRIVHINRAFTRITGYTEAEVLGRAPSLLKSGRH--DEEFYRKMW 58 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + +R E R + + IR + N G I Y+ + +D++ K+S Sbjct: 59 QAL--GQRLEWNGEIWNRRKSGEVYPQWQSIRAIRNEEGGISHYVAVFSDLSMIKRSQAE 116 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LTG+PNR F +R+ L+ + + + V+++D+D +K +N+ LG +G Sbjct: 117 LDYLAHYDPLTGLPNRLLFKERVQHALERA-RLEKGQGAVLLLDLDHFKHVNESLGHKLG 175 Query: 589 DDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 D +L S+++++ +++ A L G+ FG++ + + + A A + ++ PI L Sbjct: 176 DQLLKSVSQQLIYHVVRQGMTFAHLGGDEFGLLCENC-SPQQAATLATTLLDTLNQPIYL 234 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 + + AS+G + + + ++L+NA+ A++ AK G + + Sbjct: 235 EHHRLLIGASLGISLFPGDAQSVEQVLRNADSALHKAKSDGRATYAFYSQELTAYAHQRV 294 Query: 708 K--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + L A+E+ EL + Y PI L ++V LEAL++W HP+ G + EF+ +AEE Sbjct: 295 ELIAALRHALEHGELRVHYQPIHDLRSGQLVSLEALVRWQHPERGLVPPGEFIPVAEENG 354 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I+L+++E+ R + W + F+ +N++++ L + +++ + Sbjct: 355 LIGTIDLWVMEQACRQMRRWLKAGHKLQ-FVAVNVSTRLFSRGRLDLQVAEILACSGLEA 413 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++L +ES VM +P+ +R L RLR +G+ L +DDFGT S L L +P D +K + Sbjct: 414 RHLELEITESAVMDDPDSARRQLQRLRDLGVRLAIDDFGTGHSSLQRLKSMPVDKLKIDR 473 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + G K AI RS+I +A+++ +++A+ I + L R C Q P Sbjct: 474 GFVAGLPSDSKDAAIARSVIVLAQSLGLSVLAEGIERPEQAEFLERNQCFLGQGYLFGRP 533 Query: 944 LGFNSILK 951 + + Sbjct: 534 QPAEELFR 541 >gi|126725733|ref|ZP_01741575.1| sensory box protein [Rhodobacterales bacterium HTCC2150] gi|126704937|gb|EBA04028.1| sensory box protein [Rhodobacterales bacterium HTCC2150] Length = 908 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 144/600 (24%), Positives = 256/600 (42%), Gaps = 21/600 (3%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 ++ + + + V+ + + + S + D + D + I Sbjct: 314 EMLRLTTKLTEEVVERKHAEALLRNSMASLSATTETALDAIVQMDKKGKITKWSNKAEEI 373 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494 G G + + R+ + + F+ G + + E + Sbjct: 374 FGWLQAEAIGKNLG-ETIVPLQYREAHLSGMKHFLATGEGPVLNRRIEITGLHRNGHEFP 432 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I P NG+ + DI+E K + + I AF D LTG+PNR+ +L Sbjct: 433 IELSIAPFK-MNGE-YAFSAFMRDISEAKAAEDEINKLAFYDALTGLPNRRMLYGKLEDE 490 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + S L +M++D+D +K++ND LG A GD +LV RRI ++ D +ARL G Sbjct: 491 MKRSDRS-GLPVVLMLLDLDFFKEVNDKLGHAQGDRLLVEAARRITACVRETDTVARLGG 549 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F IIL + + K + A + KS+A P L E+ ++ S+G A + + + ++ Sbjct: 550 DEFMIILSNMKDVTKASHIAENIIKSLAAPFYLSEKINFISGSLGVALYPNDAQNADNLI 609 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 NA+ AMY AK G N F ++ R+ + DL A+ + + Y PI+ L Sbjct: 610 VNADQAMYMAKDAGRNGFSYFTLALQEAAQTRLSLISDLRTALPGKQFAVHYQPIVELAT 669 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +I EAL++W HP+ G +S ++F+ +AEE +I I ++ R++ WR+ P Sbjct: 670 GKIYKAEALLRWQHPERGPVSPADFIPVAEEAGLIHEIGDWVFHEAIRELAHWRELF-EP 728 Query: 793 PIFILINIASKDLLD---------NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 + I +N++ + + ++ + +E V++ Sbjct: 729 ELQISVNVSPVQFRESQGSDRRSLEGFKKNWLNALNGLGLPGESVVFEITEGVLVNAEAS 788 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 L +R G+ + LDDFGT S LSYL D +K + S + A+ + Sbjct: 789 VTEKLIAMRDAGVQVALDDFGTGYSSLSYLKKFDIDYLKIDQSFVQNLQDDTDNQALCEA 848 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 II MA + +IA+ + E L GCDY Q + + + LLKE+ + + Sbjct: 849 IIVMAHKLGLKVIAEGVETEPQRDLLVGFGCDYAQGWLYSKAVPADEFEVLLKEQGKVAQ 908 >gi|228913316|ref|ZP_04076950.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925816|ref|ZP_04088900.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932055|ref|ZP_04094947.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944380|ref|ZP_04106753.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229120277|ref|ZP_04249528.1| Sensory box/GGDEF [Bacillus cereus 95/8201] gi|228663318|gb|EEL18907.1| Sensory box/GGDEF [Bacillus cereus 95/8201] gi|228815282|gb|EEM61530.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827638|gb|EEM73380.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833831|gb|EEM79384.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846367|gb|EEM91385.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 569 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 144/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ D ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ IAEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 362 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565 >gi|150390997|ref|YP_001321046.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Alkaliphilus metalliredigens QYMF] gi|149950859|gb|ABR49387.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Alkaliphilus metalliredigens QYMF] Length = 1242 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 124/567 (21%), Positives = 246/567 (43%), Gaps = 9/567 (1%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + I +R + + S D+ +P + ILG M G Sbjct: 524 QGIQENINHIQKRFQVLIRDSSDVFEIVSPDGTIEYISPAVEKILGYQPKEMEGRNLMEF 583 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + ++ + + ++ E + ++ + + I + Sbjct: 584 AW--EIEKPKLEKMFKVALSEPNKNIKREISAETKLGKRIYVELTMNNQL-EEPSIKGIV 640 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 D+TE+ ++ + + A D +T +PNR F ++ + VM++DI Sbjct: 641 LNWRDVTERVEAQKKMNHIATHDQMTQLPNRLHFEKKIEYQCQEAKE-KGTTFAVMMLDI 699 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K IND LG+ GD ++ RR+ + L + R SG++FGI++ + + + Sbjct: 700 DDFKYINDALGMGFGDQLITQAARRLKDFLGETRCICRYSGDQFGILIYNLKDIEAYKNI 759 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A+ + + + EI +T S+G A + + ++K+ +A++ AK G N E Sbjct: 760 AMKIIDLFSSSFKIDPYEIYITMSVGVAIYPDDGQETQSLIKHGNIALFRAKEAGKNRYE 819 Query: 694 SFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + + +K DL A++N+E + Y P + L EI+G EALI+W+HP WG Sbjct: 820 MYSPKMDVKNYKAFTLKNDLRRAIKNNEFKVYYQPQVNLQTSEIIGAEALIRWEHPTWGL 879 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S EF+ +AEE I + ++L ++ W P I + +N + ++ Sbjct: 880 VSPKEFISLAEETGFIITLGNWILRQVCETYQKWLKDGL-PAIKVSVNYSGIQFFQKDIV 938 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E ++ I + P + + +E+V+M ++ + L+++GI + +DDFG S L+ Sbjct: 939 ENIKNTIHEFQLDPHFLVMEITETVLMNQSQQVSADIQSLQELGIKVAIDDFGAGFSSLT 998 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL D +K + + G E I+ ++I +AK++ ++A+ + + L + Sbjct: 999 YLNSFNVDILKIDRFFIKGIPLDETSNRIIEAVINLAKDLRIRLVAEGVETWDQLSYLRK 1058 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 + C Q + P+ KLL ++ Sbjct: 1059 LNCTVGQGFLYSRPVPQEDFEKLLAKK 1085 Score = 98.5 bits (244), Expect = 5e-18, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 2/152 (1%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V++ IQ + + + + A + W+ D++R++ T + + I Sbjct: 375 VVIGILGTIQDITENKLLKTQLEKSYKNLAEAQRLAKMGSWEMDVIRNKNTWSEEYYHIY 434 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G+ + G +L ++H DR+ IL + EFR+ D + Sbjct: 435 GITNKEYDGSYEAFLNFVHPEDRELIEDILAH--PPQVQPFDMEFRIIRPDGSVRHIYQV 492 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + + G + GI DITE+K ++ + Sbjct: 493 VEMTFDLEGHLTYRRGIIQDITERKALVKKMQ 524 Score = 86.9 bits (214), Expect = 2e-14, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 +G + +D+ + ++ + ++ I G+ N + IH D+D + + Sbjct: 283 AGVGSYRYDLGNEELSWSEEVYRIFGVDPQKFTKRFENIITLIHPEDQDTVQNSTAGCLK 342 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + + E+R+ D +I + P+ + + ++ +G DITE K + Sbjct: 343 GKA--YEIEYRIIGLDGSEKCVISKGEPIFDDDQVVIGILGTIQDITENKLLKTQLE 397 Score = 85.0 bits (209), Expect = 6e-14, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 W +D + + + ++ I + I + +IH D+ R ++ + Sbjct: 157 SIGSWTYDFQSEELFGSQEVYDIFQRTTEEFDNKIESVYTFIHPEDQQVVRKSMEKAL-- 214 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 R E+R+ + ++ R + + ++ IG DIT +K Sbjct: 215 RGNDHDQEYRIMVPGGKEKYIHSRAEVLFDDMNRPIKMIGTIQDITGRK 263 >gi|330899511|gb|EGH30930.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 596 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 139/585 (23%), Positives = 265/585 (45%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 13 MLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 72 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L + + D + + E ++R Sbjct: 73 CQLLGYTAEELSHKTPAELG---ETSMEKLEVVYDRIIAGKGPSEPLETQIRDKSG--RD 127 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 128 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 187 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + V+ I++D +K IN+ G +GD+VL+ ++RR+ L D L R+ G Sbjct: 188 MTQAAIS-RWKLAVLTINLDDFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 246 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ + +R ++ +P ++ + + +TASIG A + S E++ Sbjct: 247 DQFAMILMLRDGQAGTRQTLERIRNALRVPFHIEGQSLVMTASIGIALYPEDGEDSRELI 306 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM A+ G ++ + R+ ++ L AV N +VY P + L + Sbjct: 307 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 366 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + I GLEAL++W P +S + F+ + E L +I + ++++ + I W+ Sbjct: 367 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 425 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + ++ L ++ + K +P +++ +ES +M N + LG LR Sbjct: 426 SFQVAVNISGQQISNSSLVADIRQALEKHNVAPHWLEVELTESSLMENTAHTIATLGALR 485 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 486 ASRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 545 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD Q ++ PL + L+ Sbjct: 546 LLVIAEGVETPEQLAFLRENHCDQSQGYLISKPLPLEELETFLRS 590 >gi|56476210|ref|YP_157799.1| phospholipase A2 [Aromatoleum aromaticum EbN1] gi|56312253|emb|CAI06898.1| predicted phospholipase A2 [Aromatoleum aromaticum EbN1] Length = 1043 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 136/592 (22%), Positives = 245/592 (41%), Gaps = 16/592 (2%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 + ++ I I V S + + + S D W + Sbjct: 458 LITEMVADIGYALDRIDLVAEQARTSAALRESEVKYRKVLETSQDGFWLLNRDWLLTEVN 517 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 G + G L +D + S V E R R + Sbjct: 518 DAYIEFSGYRREELVGMHVTQLD---ASDASEMARHIASAVEDGNATF--ETRHRTKSGE 572 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + ++ G + D++ + ++ E I + D LTG+PN F D L Sbjct: 573 LKPVEVS---VTFDAGRAACFSLFVRDLSRRDEAQEHIRRLSHFDTLTGLPNSSLFADLL 629 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 + + +VM IDID ++ IND LG +GD +LV + R L + LAR Sbjct: 630 RQAIGNAQRSGE-SLSVMYIDIDHFQHINDTLGHRIGDRLLVEIAGRFRNALCAENTLAR 688 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+L A A + + A P+ + + E+ VT SIG A + + Sbjct: 689 LGGDEFLILLPHAQ-VECAAHVAEKLIVAAADPMLIEDHEMLVTPSIGIAMYPADGEDFE 747 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIR 729 +L+ A+ A AK G N F + ++ L A+E +EL L Y P I Sbjct: 748 TLLQRADTATNRAKSDGRNTYRFFAPEMQLRSAHTLRLETALRRALERNELVLHYQPQID 807 Query: 730 -LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 + + G+EALI+W HP++G +S +EF+ IAE +I I ++++ + +W+ Sbjct: 808 LVDFGRVAGVEALIRWQHPEFGLVSPAEFIPIAESTGLILPIGEWVMQTALLQLKAWQLA 867 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + +N+++ L + ++++ S ++L +ES +M +P + ++ Sbjct: 868 GLQLG-QVGVNLSAHQFRQQNLPATVARILAEAGLPASCLELELTESAMMDDPVAAVAMM 926 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 L + G+ +++DDFGT S L+YL D +K + S + + AI+ +I+ +A Sbjct: 927 DALHRDGVRMSIDDFGTGYSSLNYLKRFRIDKLKIDQSFVRDLTQDPEGEAIVEAIVSLA 986 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + + IA+ + + L GC +Q + PL + + L+ P Sbjct: 987 RTLRFRTIAEGVEKPEQLAFLRASGCQEVQGYLFSRPLPPDELAVWLRAWRP 1038 >gi|226944712|ref|YP_002799785.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii DJ] gi|226719639|gb|ACO78810.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii DJ] Length = 1104 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 139/616 (22%), Positives = 269/616 (43%), Gaps = 13/616 (2%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 W I I V+ + + + + + Sbjct: 493 WAAILGSTATGTFQFLG-AHGPFDAELRFVTFTQEEREIHTFVLNDISERKHTERQLRQE 551 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + + + + +D ++ I G S + G D+ Sbjct: 552 RDYADAVLNSLPGVFYHYDENVRLRRWNRNLERITGYKSEELAGVEPTIF--FADEDKAL 609 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + ++ ++ + D Q + +G ++G+ DI+E+K Sbjct: 610 VASRIGEVFEKGESSVEADYLL--KDGQRIPYLFTG-VRFEYDGR-RGFVGVGYDISERK 665 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + I A D LT +PNR +R+ + + L + +D+D++K +ND Sbjct: 666 RAEQRIRHLAMHDGLTDLPNRNLIQERIEQAIVRARRGGRLLAL-LYLDLDRFKVLNDGY 724 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD VL + + R+ +L++ D +ARL G+ F I+L A + S+ Sbjct: 725 GHLFGDAVLKTASERLLKLVREGDTVARLGGDEFLILLADLEQPADADAVARKIVGSLDC 784 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 PI + ER+I ++ SIG + + T+ E++ NA++AMY AK G N + F + Sbjct: 785 PIVVQERKIHLSGSIGVSLFPRDGETADELIDNADMAMYRAKELGRNTYQFFTRAMSLET 844 Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + ++ L A +L LVY P + L + I G EAL++W HP+ G +S F+ IA Sbjct: 845 QRRVDLEIKLRGAATAGQLQLVYQPKVSLENGGISGCEALLRWHHPELGIVSPEHFIPIA 904 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I ++L +W D PP+ + +N++++ L ++ + + +T Sbjct: 905 EDSGLIVPIGDWVLRTACMQARAWMDAGL-PPVCVAVNVSTRQFLQQDVVAWVTRTLRET 963 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 +R++L +ES++ + E+ + +L+ IG+ L++DDFGT S L+YL DT+ Sbjct: 964 GLPAARLELELTESLIARDIEKVTATIDQLKDIGVKLSIDDFGTGYSSLNYLKRFRVDTL 1023 Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + + I+ ++I +A N++ +IA+ + E + L GCD IQ + Sbjct: 1024 KIDQSFVRNMLTEMEDETIVLAVIALAHNLKFKVIAEGVETEQHSRFLCSNGCDEIQGHY 1083 Query: 940 VASPLGFNSILKLLKE 955 + P+ + +L+ Sbjct: 1084 FSEPVTAEAFETMLRA 1099 Score = 43.4 bits (101), Expect = 0.21, Method: Composition-based stats. Identities = 26/268 (9%), Positives = 61/268 (22%), Gaps = 39/268 (14%) Query: 277 RWHAKVGYITFSGIACIAILFCMSFYY--PMVTASIARITLASIVLYYTYFIIYHGMKGY 334 RW GI+ + + + + P+ + + + + + + Sbjct: 311 RWVGARRLDLKGGISWLVVASRTAPFIEAPLRHQLFQVLGMGLAIALGLVLVSVRTARRF 370 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 R + + + D + + + +A Sbjct: 371 GRPLAELERR-----------VTGIGLHDLNASATSPLSSADDFRETQLLGKALDRMAAA 419 Query: 395 YFSQGIFSDGERQSLAVLG-----SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 Q + + SLA+ G S ++ D + + G + G Sbjct: 420 VRQQVRAKEQQVASLALKGALFDFSSAAIFSLDRQLKVIEWNAAAERLFGQERDGVLGRA 479 Query: 450 RNWLPYIH--INDRDNFR---TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + D G E R + + Sbjct: 480 AGEVVTAPNGPADWAAILGSTATGTFQFLGAHGPFDAELRFVTFTQEEREIHT------- 532 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCN 532 + NDI+E+K + + Sbjct: 533 ---------FVLNDISERKHTERQLRQE 551 >gi|239992966|ref|ZP_04713490.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alteromonas macleodii ATCC 27126] Length = 701 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 127/591 (21%), Positives = 261/591 (44%), Gaps = 9/591 (1%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 D I + GL + + T+ + + ++ ++ ++ + D V + Sbjct: 103 DFISKPIDIGLCQMRVRNHLTIQDQKTKLARVNHELEAEKKQLAITLKSIADGVISINAA 162 Query: 425 RDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRT-ILDSFVGYRRGRLQYE 482 D P + G + G + + + L + R + Y Sbjct: 163 GDVTFINPVAQRLTGYSETEALGKPIDEVMNLRDASTNERLLNPALYALEVMRPVAMSYN 222 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 + + NQ + P+ + +G + + + D++E + + D LTG+P Sbjct: 223 ATLVSRHNQVFRVEDTASPIIDEDGHLSGAVIVFQDVSEAIEMAVKMTHLTNHDQLTGLP 282 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR DR+ + T +++IDID +K +ND LG VGD ++ S+ +R+ ++ Sbjct: 283 NRVLLHDRVVQAITRCFTSKQ-SIALLLIDIDNFKYLNDSLGHQVGDYIIASIAKRLAKV 341 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 + LAR+ G+ F +L + A+A ++ PI++ + ++ SIG + Sbjct: 342 VGESATLARVGGDEFACLLTEIGSGYSADSIAMACLQAGREPIDIDGKAHQLSLSIGISL 401 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSEL 720 + + + EM+++A+ AMY +K +G + F + ++ + L A+EN L Sbjct: 402 YPQDAVNAEEMMRHADSAMYRSKSKGKDTFSFFSKDLQHAMHHRVEMEVKLRNAIENDSL 461 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 + P D ++ E+L++ I EF+ +AEE +I + +L++ Sbjct: 462 AIYLQPKYNFDDSAVLSAESLVRMFDENGKVIGPDEFIPLAEETGLIHQLGKQVLQKSCE 521 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + + + +N+A+K L + + + +I++ + S I+L +ES +M + Sbjct: 522 FVARCNELG--QDFKVAVNVAAKQLSNPGFAKEVAEIINEAGIAASSIELEVTESALMHD 579 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--I 898 E++R +L L +G+++ LDDFGT S LSYL P + +K + S + +++ A I Sbjct: 580 FEQTRDILNDLASLGVTIALDDFGTGYSSLSYLRQFPLNVLKIDRSFVIDMDKEQQAHDI 639 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + +I+ +A ++E TI+A+ I + L +GC Q + P+ Sbjct: 640 VTAIVHLALSLELTIVAEGIETQSHFAALKALGCHLGQGYFMCRPMAMADF 690 >gi|146282936|ref|YP_001173089.1| sensory box protein [Pseudomonas stutzeri A1501] gi|145571141|gb|ABP80247.1| sensory box protein [Pseudomonas stutzeri A1501] Length = 855 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 139/566 (24%), Positives = 269/566 (47%), Gaps = 20/566 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ER + D +W+ D + I G G Sbjct: 299 RLASSRSALAESEERFRDVAEAASDWIWETDEQARLTFLSNRFRQITGHEPAQWLGRP-- 356 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L + I D + L++ L+ +R AAD + + R + +G +L Sbjct: 357 LLELL-ITDSAALQNWLEA---PHSAPLRSSYR--AADGCERYCRLAARTIQ-HDGKLLG 409 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y G A+D+TE+ ++ + + D LTG+PNR D L +L++ T++ I Sbjct: 410 YRGTASDVTEETRAQARVQYLSQHDALTGLPNRSRLRDYLEQ--NLASLRSGSTLTLLYI 467 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND LG A GD+VL+ + R+ E + D++ARL G+ F ++L I Sbjct: 468 DLDRFKPVNDTLGHAAGDEVLIGVASRLRERTRDGDLVARLGGDEFVVVLHRMGEDNDID 527 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + +++ P +++I++ ASIG A + ++E+L+ A++A+Y AK G Sbjct: 528 RLCNRIIDALSAPFIYEDQQISIGASIGVALAPTDANQANELLRCADIALYQAKDAGRGT 587 Query: 692 VESFRVSSFRSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 ++ + ++ + L A+ +L + Y P + I+G EAL++WDHP+ Sbjct: 588 WRAYGREMDQRLHERLRREEELRVAITEQQLEVHYQPRYQSQGLYIIGAEALVRWDHPQR 647 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + +F+ +AEE +I + ++L + + W + +N++ L D+ Sbjct: 648 GMLLPEQFIPLAEETGLIIPLGRWVLRQACQQAARWP-----GDTVVSVNLSPLQLHDDR 702 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + ++ + +R++L +ES ++ + + LL R++ +G+ L +DDFGT S Sbjct: 703 LLEEITQALADNGLAGNRLELEVTESALLRETQNTLELLKRIKALGVRLAVDDFGTGYSS 762 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+ L + PFD +K + S + G + + +I+R++I + + + + A+ + E ++ L Sbjct: 763 LTTLRHYPFDVIKIDNSFVAGIGQSIEDHSIVRALIELGRGLRMRVTAEGVETEEQLRLL 822 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 T GC +Q H++ PL + +L Sbjct: 823 TDDGCTEVQGFHMSHPLPAQDLWTML 848 >gi|312173911|emb|CBX82165.1| Heme-regulated cyclic AMP phosphodiesterase [Erwinia amylovora ATCC BAA-2158] Length = 818 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 137/529 (25%), Positives = 241/529 (45%), Gaps = 14/529 (2%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + + +LG + G + F L + G + E Sbjct: 294 VSGEILLINNRAEQLLGGSQCEFIGKKAQ--ECMTPAMSAYFMQ-LSDAAQRKGGVQRNE 350 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 ++ + + + + + IA+D+T+Q+ + I A DNLT +P Sbjct: 351 RQLATSGGDRI-ISASASMVRGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 409 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F LTT L D V+ +D+D +K +ND LG VGD +L S+ R+ + Sbjct: 410 NRVLFNQHLTTAL-REDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSV 468 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L+ D LAR G+ F I+L ++ + A + ++I P + +++ SIG Sbjct: 469 LRNRDTLARNGGDEFSIVLPGLSHPEEAEAMARRLIETIRPPFTVHGHNLSIGLSIGITL 528 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720 + +L+ A++A+Y AK G N E F + R +I+ DL A+ +L Sbjct: 529 AQHGMTSPDYLLRCADMALYAAKRNGRNRFEHFTKAMGDTAQKRRIIENDLREAITYRQL 588 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y PI EI+G EAL++W HP+ G I EF+ AEE +I ++ + L R Sbjct: 589 KLYYQPITNNQHREIIGYEALMRWHHPEKGIIMPLEFIPTAEETGLIHSLGTYALYEACR 648 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + SW + + +N++ ++ L ++ + ++ +P R+++ +ESV++ N Sbjct: 649 EAASWPGEQ-----TVAVNLSPLQFKNSALIAVVEGALKESGLAPHRLEVEITESVLLDN 703 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898 + +L L+ +G+ + LDDFGT S LSYL PFD +K + S + + R AI Sbjct: 704 TLANIDILRELKALGVQIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMQDSREALAI 763 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 +R+I M+++++ I A+ + + L GC Q + P Sbjct: 764 IRAITGMSRSLDIQITAEGVESNEQFQRLKAEGCTLFQGYYFGRPQPPE 812 Score = 53.8 bits (128), Expect = 2e-04, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 3/123 (2%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 L V G D ++ D+ + G + G ++ + DR + Sbjct: 135 FRLLVEGINDYAIYMLDLNGLVLNWNAGACRAKGFTCNEIIGK--HFSCFYSKQDRRHNL 192 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + G + D W + I + N G+++ + I D TE ++ Sbjct: 193 PDKNLQLATATGHFEDNGWRYRKDGSAFWAHVVIDAIRNDGGELIGFAKITRDCTEMREY 252 Query: 526 LEG 528 Sbjct: 253 ERQ 255 Score = 41.5 bits (96), Expect = 0.64, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 2/119 (1%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 SD Q LA ++ D + + G + G RN+ + D+ Sbjct: 5 SDVVYQLLARSEGNCGIYMLDPEGIVASWSLGAQHAKGYLPAEIIG--RNFSCFYSQQDQ 62 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + V GR + D W I + + NG +L Y I + T Sbjct: 63 MLGKPRHGLQVAREAGRFATKGWRYRKDGSAFWAHEVIDAVFDDNGKLLGYAKITRNCT 121 >gi|170723973|ref|YP_001751661.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] gi|169761976|gb|ACA75292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida W619] Length = 1247 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 150/580 (25%), Positives = 270/580 (46%), Gaps = 12/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + G + + + + + + + V DI + + I G Sbjct: 658 IAGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717 Query: 441 ASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 G R H D + + G Q E + + + + + I Sbjct: 718 NETEALGQTPRLLASGQH--DSAFYAAMWHQLTAE--GHWQGEIYNKRKNGELYPGWLTI 773 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + NS+ +I ++ + DI+ K + + A D LTG+PNR F +RL L + Sbjct: 774 SAVRNSDREITHFVAVFADISSLKHAQAKLDYQAHHDPLTGLPNRALFENRLQAAL-ICP 832 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 N + V+ +D+D++K IND LG VGD +L + +R+ E ++ D +ARL G+ F I Sbjct: 833 QASNRQGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + A + + P E E +ASIG + + + +++NA+ Sbjct: 893 LLPGLHKPSDASAIANKLLSCFSAPFQAGEHEFFTSASIGISLYPQDGTDVATLIRNADA 952 Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY +K +G N VE++ + S+R+ ++ +L A+E +E+ L Y P L + +VG Sbjct: 953 AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAIERNEMSLCYQPKFSLKTQTLVG 1012 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EALI+W HP +G + F+ +AEE I + ++LE+ R + W+ + Sbjct: 1013 AEALIRWSHPAFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMHHWKKHYQAFG-PLS 1071 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN+A L + L + ++ L+ ++L +E+ +M E + +L +L+++G+ Sbjct: 1072 INLAGAQLRHHGLAKRIEQLLKTYQLKAGDLQLEITENFIMSQAEEALAVLHQLKQLGVQ 1131 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L +DDFGT S LSYL +P D +K + S + G AI R+II + ++++ TIIA Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954 + + + + L GC+ IQ V+ PL + L+ Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPDDFAAAFLR 1231 Score = 81.2 bits (199), Expect = 9e-13, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 10/170 (5%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVL-----ATGYFSQGIFSDGERQSLAVLGSGDIV 418 +D++ L G L+LI IL I L Q + S + I Sbjct: 265 HDMLMYGLPGVLLLIAILAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLIESLSAIA 324 Query: 419 WDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 W+ D +P +LG W +H D + Sbjct: 325 WEADANDFTYSYVSPHAEDLLGYPLHEWL-KPGFWRTILHPED-ALWAQAYCESETAAGR 382 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD W+ + + +G G+ DI+E K++ + Sbjct: 383 DHSLDYRVMRADGHSLWVRNIVSMI--EHGHRPVMRGLMIDISETKRTED 430 Score = 59.6 bits (143), Expect = 3e-06, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 12/173 (6%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424 L L ++ + Q + + E+ + A S D + Sbjct: 522 FTGLTSAETFELDGTLAFVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581 Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + G ++ + ++ +N+R L R +F Sbjct: 582 GLLIEVNEGFCRLTGYDLDPALDQTSFDLGIWVDLNERKRLIAQLA------RDGFVRDF 635 Query: 484 --RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +R +D Q + RP+ + + + IA DITE+ E + A Sbjct: 636 SCHIRRSDGQIRLCELSARPLPIAG--VDCMLTIARDITERHLMQEKLQLAAT 686 >gi|330823162|ref|YP_004386465.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|329308534|gb|AEB82949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicycliphilus denitrificans K601] Length = 698 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 124/574 (21%), Positives = 253/574 (44%), Gaps = 16/574 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ V Q + ER + + + + + + + G Sbjct: 129 LVLVNDVTERLEAEQAVRQSEERMRKFAEATEEGL-AFHRDGRILDANASLQRMTGYTLA 187 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G R+ +I R L R YE +R D + + + Sbjct: 188 ELVG--RSIFDFIQPEYR-----ALAQEYTRRGREYPYELAMRHKDGHAIPIEAVGKTLP 240 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + + DIT +K++ E A D LT +PNR+ + +L + + Sbjct: 241 QQQDE--YRVVVVRDITARKQAQERARFLALHDPLTQLPNRRHLMLQLARTVATAQERRK 298 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 R V+ +D+D +K +N+ LG GD +L + RR+ E +K D +A + G++F ++L Sbjct: 299 -RSAVLFVDLDHFKTVNESLGHEAGDQLLCEVARRLQEGVKATDFVAHVGGDQFVVLLSG 357 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 A A A+ + I + E +++ + S+G + + E+L+ A+ AM Sbjct: 358 LRGRAAAAAAADALIERIRAVYTIGETQLSPSPSVGISVFPDDGYGPDELLRRADAAMQQ 417 Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + + + L AV + L L Y P +++ +VGLEAL Sbjct: 418 AKESGRGTRLFYTPDMEGQPAEVLQQEHLLREAVFHDALELHYQPQVQVASGRLVGLEAL 477 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G + +F+ +AE +I I ++L R + +W ++ + + +N++ Sbjct: 478 VRWRHPQRGLVGPDDFIPLAESRGLITPIGRWVLREACRQLKAWHNEGLAL-VPVAVNLS 536 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + ++ + ++ +T P +++ +E+ +M + E +R L L+ +G+++T+D Sbjct: 537 AIEFRQRDVAGEIARVLQETGLEPQYLEVEITETTLMQHAEHTRATLQALQAMGVAVTVD 596 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P D +K + S + + +AI+ +I+ +A++++ +A+ + Sbjct: 597 DFGTGYSSLTYLKRYPLDKLKVDRSFVADTPADGDDVAIVTAIVQLARSLQLQSVAEGVQ 656 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L +GC+ Q +A P+ L Sbjct: 657 TTEQLTLLQSLGCELAQGFGIAPPMDVRRTRAWL 690 >gi|83646377|ref|YP_434812.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83634420|gb|ABC30387.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 841 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 153/571 (26%), Positives = 277/571 (48%), Gaps = 13/571 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIR 450 A + + R V + D + + V +L + G Sbjct: 140 ALKVAYRHLKDSELRYRKLVETTPDAILV-EGEEGIVFLNSAAVKMLKADNPDKLLG--G 196 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDI 509 L ++ + ++ L R E + + + P+ + + Sbjct: 197 ALLDFVLDDQKEYAAMQLKQACSVDRSAGPPEVMLLQQLTGGRVEVEVNCIPI-SYHRSP 255 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + DITE+++ I A D LTG+PNR FLDR+T ++ + +++ R ++ Sbjct: 256 CHMF-VLRDITERRRQEAAIEFQATHDALTGLPNRSLFLDRVTQSINHARRNES-RLALI 313 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ID+DK+K IND LG GDD+L +++R+ E + D LAR G+ F +++ + + Sbjct: 314 FIDLDKFKLINDTLGHNAGDDLLRIMSKRLQECTRNCDTLARFGGDEFVLLVDNLESEAD 373 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + S++ P+ LL + ++T S+G +S+ ++++A++AMY AK G Sbjct: 374 LTHLAARLISSVSAPVLLLGQSHSITCSLGISSFPEDGDNVEVLMRHADIAMYRAKESGR 433 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + F ++R+ ++ L A+EN E L Y P + L +I+GLEALI+W P Sbjct: 434 NSYQFFTHQMQDRLNERLKLESSLKQALENDEFVLHYQPQVDLSTGKIIGLEALIRWQSP 493 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G + +F+ AEE +I AI +++ + + + SWR Q + + INI++ ++ Sbjct: 494 TLGLVPPGDFIPAAEEGRLISAIGEWVIFAVCKRLQSWRRQGLKI-VPVAINISALQFME 552 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + E ++ +++ + P ++L +ES+ M +P S L+ RL+ IG+SL++DDFGT Sbjct: 553 QKTEELVKQALNEYMVEPKYLELELTESLSMLDPVTSISLMQRLKDIGVSLSIDDFGTGY 612 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL P + +K + S ++G +I+++II M++++ IA+ I Sbjct: 613 SNLSYLKRFPVNKLKIDKSFVSGLTNNPDDYSIVKAIIRMSQSLGLKTIAEGAETAGQIA 672 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L CD IQ + + PL I +LKER Sbjct: 673 LLAAENCDAIQGFYFSRPLPEAEICAMLKER 703 >gi|119775299|ref|YP_928039.1| sensory box protein [Shewanella amazonensis SB2B] gi|119767799|gb|ABM00370.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella amazonensis SB2B] Length = 1431 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 137/561 (24%), Positives = 260/561 (46%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I + S G + + Sbjct: 870 QAEEQLRLFERAIENISEGMFILDHEFRFVEVNEACCDICLMDKDSFIGTQLQF--SCYP 927 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + + + + GR E R DN M + + + + G + ++G+ +D Sbjct: 928 D---AYSEQVRIILRQQ-GRWSAEVESRRGDNSTFLMELTVDAIYDEQGTLSHFVGVFSD 983 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L ++ + T+MV+D+D +KK Sbjct: 984 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVSLNNLVKK-----DTHHTLMVLDLDNFKK 1038 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD++L ++RR+ L L RL G+ F ++L + + A A + Sbjct: 1039 INDSLGHQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVLLDKDPDIGSAAAIAKGLV 1098 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P L ++ V SIG + + +L+ A++AMYHAK GGN + + S Sbjct: 1099 DAFVAPFELAGEKLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1158 Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ + + + + + Y P + L + + G+EAL++ +HP G I SE Sbjct: 1159 LNRNALRQLEVENLIRDGLRDDLFEVYYQPKVDLRNSRMAGMEALVRLNHPTQGLIPPSE 1218 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I ++ + WR+Q + +N++S+ +L + +++ Sbjct: 1219 FIPLAEETGLIVEIGDLVMRKACFAAQRWREQGLF-DGRVAVNLSSRQFALTDLQQRIES 1277 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE++ ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1278 ILRLTKLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1337 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ T++ + + + L + C+ Sbjct: 1338 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPSQLNILRALKCEE 1397 Query: 935 IQDSHVASPLGFNSILKLLKE 955 +Q + + LLK+ Sbjct: 1398 VQGYIYSKAVPEAEFTTLLKQ 1418 Score = 125 bits (315), Expect = 3e-26, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 2/156 (1%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 LI +LI +I+ L + I ER L++ GSGD +WDWDI ++ + Sbjct: 722 ALIFLLITSGIIKAALRRREVQRQIAISEERLKLSLWGSGDEMWDWDIETGKIYRSNIWG 781 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + L + IH D++ R L+ + +RV+ D + W+ Sbjct: 782 S-LEFPKDGHRSGKDDEESNIHPQDQERVREALNRHFYGETDHFEAAYRVKGKDGHWVWI 840 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + R + + + + + LR G +I K++ E + Sbjct: 841 LDRAKIVERDDSENALRMTGTIKNINNFKQAEEQLR 876 >gi|189424637|ref|YP_001951814.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189420896|gb|ACD95294.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 631 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 153/564 (27%), Positives = 284/564 (50%), Gaps = 16/564 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + +G + D + V + L +G + +N I Sbjct: 66 NSELAATRDELQAIFDSAGGAIVVVDEKMEVVACNS--YSQWALFAGERNVMGKNLRSLI 123 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D++ IL+ + +R Q +F D + P+ N +G I R + + Sbjct: 124 CGHDQE--ECILEQILTTQRRVEQNDF---LHDG--RHYHLVGTPLKNHDGAISRVVLLY 176 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE++ + E I AF D+LTG+PNR DRL +L + N ++ ID+D++ Sbjct: 177 TDITERRAAAEEIERLAFFDSLTGLPNRVLLKDRLAQLLTRAGRY-NEMVAILFIDLDRF 235 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND LG GD +L ++ R+ L+ D +ARL G+ F ++L + D A Sbjct: 236 KEVNDTLGHGTGDQLLQVVSERLTACLRSCDTVARLGGDEFVVLLPGITERDCVGDIAAK 295 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + +S+ P+ L RE+ + SIG + W + S + KNA+ AMYHAK +G N + Sbjct: 296 LLQSLCKPVQLDAREVFTSGSIGISLWPIDGDSVSTLFKNADTAMYHAKEQGRNTYRFYT 355 Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 +++ + DL A+E EL+L Y P + ++G+EAL++W HPK G I Sbjct: 356 PQMHATSMEQLTLSNDLRYALERGELHLCYQPQVSFETGGLIGVEALLRWIHPKLGMIPP 415 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I I ++L R + W Q P + + +NI++K +++ + + Sbjct: 416 DRFIPLAEDTGLIVPIGTWVLHEACRQAMMWVAQGL-PSLRVAVNISAKQFRESDFSDTV 474 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +A++ T +P+ ++L +E +++ N +++L L L+ +G++L +DDFGT S LSYL Sbjct: 475 KAVLQTTGLAPNLLELELTEGMLIENVTQTKLTLQSLKDMGVTLAIDDFGTGYSSLSYLK 534 Query: 875 YIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + P D +K + S + E AI+ +++ + +++ T+IA+ + + + L Sbjct: 535 HFPLDRLKIDKSFVKEIAEKSGDAAAIVEAVVALGHSLKLTVIAEGVEQQDQVDFLHNRK 594 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 CD +Q + PL ++ +LL++ Sbjct: 595 CDELQGYFFSRPLTPQALEELLRK 618 >gi|95930928|ref|ZP_01313658.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95133054|gb|EAT14723.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 745 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 137/607 (22%), Positives = 279/607 (45%), Gaps = 20/607 (3%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 D ++ + +L + +Q + V S DI++ D Sbjct: 125 DFLRKPYLPTTLLESVSTEIAKVQTQHRYHQIQDELKGSEALHRFIVNNSPDIIYMLDQE 184 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + +LG + ++ G ++ ++ +D + + + + R E R Sbjct: 185 GRFSFVNKRVQLLLGYSDKNLIGQ--HYSSIVYGDDIEKAQFVFNERRTGDRASHAVELR 242 Query: 485 VR-AADNQFHWMIIRIRPMS-----------NSNGDILRYIGIANDITEQKKSLEGILCN 532 + + + ++ R + + + + G+ DITE+K+S + Sbjct: 243 LLNRHNKEIRFVEARSLSVELTSMGVYRSGSGEHEEFIGTYGVIRDITERKRSEALQHYH 302 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 + D+LT +PNR F DRL L + + + V+ +DID+++ IND LG GD +L Sbjct: 303 QYHDHLTDLPNRTLFHDRLHMALAQARRNSH-NLAVLFLDIDRFRMINDSLGHLAGDKIL 361 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 +T+R+ L+ D LAR+ + F ++L + S A + +S ++P++ E+++ Sbjct: 362 QRITQRLSTNLREEDTLARIGSDEFLLLLPNIKTSQDAITIAEKINQSCSVPMSYQEQDL 421 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710 +T SIG A++ T E+++ AELA K G + ++ + ++ Sbjct: 422 RLTFSIGIATFPEDGTTREELIRCAELAKCQVKQNGRHGCLLYQPQYQHQQVSALEMETA 481 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 + ++ + L Y P + + + +VGLEALI+W+HP+ G ++ S F+ +AE+ +I + Sbjct: 482 IRQGLQQDQFELYYQPQVDPVAQRVVGLEALIRWNHPQQGLLNPSLFIPVAEQSSLICEL 541 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 + ++R RD ++ ++ + I +N++ + + + +S + +++ Sbjct: 542 GQWAVDRACRD-ARLLEERSLTGLKIAVNVSIQQFERPSFAKNVLESVSLHGLESNHLEI 600 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ES +M N +R LL L + GI + +DDFGT S LSYL +P VK + S + Sbjct: 601 EITESNIMKNMDRGANLLTSLAEHGIGVAIDDFGTGYSSLSYLQTLPVSKVKIDRSFICN 660 Query: 891 STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + ++ I+ +++ +A + +A+ + E + L GC IQ + +SPL F Sbjct: 661 LSGEKNGLPIVIAVLNLAAALNIHCVAEGVENEQQKQILQDAGCRLIQGFYYSSPLSFAQ 720 Query: 949 ILKLLKE 955 ++ LK+ Sbjct: 721 LIPYLKQ 727 >gi|268680073|ref|YP_003304504.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268618104|gb|ACZ12469.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 629 Score = 516 bits (1328), Expect = e-143, Method: Composition-based stats. Identities = 154/623 (24%), Positives = 278/623 (44%), Gaps = 16/623 (2%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 WIL +G ++ + + L L+ ++L F + + + Sbjct: 16 FFSILWILFSDSVVGFFIHDNSLISSLQTIKGLFFILITSLMLY-FLIKAKIDEIESIRK 74 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R + G+ WDWD V + LGL G + ++W IH Sbjct: 75 NLNEHRQRLEYVIEGANLGYWDWDYVNHQQWVNDRWLGFLGLMRGDIQDDFKDWAERIHP 134 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN--GDILRYIGIA 516 +D+ ++S + + EFR++ D + W+ + G LR G Sbjct: 135 SDKIVADKAIESTIRNNK-PYVIEFRMQHKDGHWVWIEGSGAVVKRDEKTGAPLRLAGTH 193 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI+++K++ E +L A D LT +PNR L + DDN + +D+D + Sbjct: 194 RDISDRKRTQEDMLFLALNDPLTRLPNRAY----LRQEFEKRRLDDNSLMAFLFLDLDYF 249 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND+ G ++GD V+ + +R L D LAR+ G+ F I+ + Sbjct: 250 KNINDMYGHSIGDRVIQIVAKRFASCLCESDFLARVGGDEFVILTNGHL---HVGSLCED 306 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + +S+ PI L E + SIG A + + KNA+ AMY AK G N + Sbjct: 307 LVRSLVEPIVLEEDSFLLGVSIGVACSPQDGTSFEMLFKNADTAMYEAKSNGKNRYVFYT 366 Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + ++ A++N E L Y P I L ++++G+EALI+W+ P G + Sbjct: 367 QDMTDTIVKSTKLDNEIKRALDNDEFVLYYQPQIDLKTKKVIGIEALIRWNEPSKGILGP 426 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 + F+ AEE +I + + ++ + + W ++ + + INI+ + + + + Sbjct: 427 NVFIPRAEENRLIIPMGEMVFKKALQQVKQWSEEKLLTG-RMAINISGIQIEEENFVDRL 485 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +A+ + S I+L +ES +M E S L+L L+ +G S+ +DDFGT S LSYL Sbjct: 486 EAIRKEIGVDASLIELEVTESYIMTKAESSILMLQELQDLGFSIAVDDFGTGYSSLSYLK 545 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P +K + S + + AILR+I+ +A+ + ++A+ + E + L + GC Sbjct: 546 QLPLQKLKIDRSFIKDLPYDYEDRAILRAIVSLAQGLRLEVLAEGVEEEEQEEFLLKNGC 605 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 Q A P+ + + L++ Sbjct: 606 HLAQGFLFAKPMSAEACEEYLRQ 628 >gi|170745256|ref|YP_001766713.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] gi|170658857|gb|ACB27911.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] Length = 776 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 168/763 (22%), Positives = 312/763 (40%), Gaps = 42/763 (5%) Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL----- 273 + A+ ++ F S + + + + ++ +YL Sbjct: 33 FASLAVGAASGTIVATAAAFWSDDWAITLTA------FAVGLIGLTRVLLARVYLTKGPE 86 Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 ++R Y + A A L +SF ++++A + I G Sbjct: 87 KYDRHEIWETYFSVGAFAYAASLGILSFLITTRSSNLALQVITPTFTIGYAAGISGRNAG 146 Query: 334 YERAVLLIPAWILIFIWFIGLWMAITK---RLDNDIIQPALVGGLVLIVIL---IGFTVI 387 LL A +++ + + ++ R I+ G++ I + I + + Sbjct: 147 RP---LLAIAQVVLSAMPLSAGLLVSGDGERASLGILSLLFAYGMIDITLSTREIIVSAL 203 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH- 446 + + +A+ + +D +I G+ S +H Sbjct: 204 VTTREKEALAAKFQAQANLFDIALRNMSHGLCMFDARGRLQVWNDQFLSISGIPSSRIHT 263 Query: 447 ---GPIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 L +++R R + L +F + D++ ++ R Sbjct: 264 NSTARSLYKLSRAIVDERSAGRGSTLSTFAAASNALRSGNLVLILPDDRVVSLMQRRTAE 323 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 Y+ I DITE++++ I A D+LTG+ NR SF +++ L SA Sbjct: 324 K-------GYVIIFEDITERRRNEARIQQMASYDDLTGLLNRSSFKAKVSEALKASARSK 376 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 V ++D+D +K IND LG GD +L + R+ + +ARL G+ F I+ Sbjct: 377 G-DFAVHLLDLDHFKVINDTLGHPAGDRLLQMVADRLRGIGALSGSVARLGGDEFVIVQQ 435 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 S + D A + + + P ++ +TV ASIG A +LK A++A+Y Sbjct: 436 SVTSPAVAEDLARRVLQELERPFDIDGTHVTVGASIGIAIAPFHANDEDRLLKCADIALY 495 Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 K G + + F+ + R ++ DL A+ N EL L Y PI+ IV EA Sbjct: 496 AIKGAGRSGFKIFQHEMEAATRARHALESDLRAALTNGELELHYQPIVDSSTGAIVSCEA 555 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP G I S+F+ +AE+ +I + ++L R+ W + + +N+ Sbjct: 556 LLRWHHPVSGYIPPSDFIPVAEDTGLIVQLGNWVLNEACREARKWPST-----VSVAVNM 610 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + D +L + ++++ R++L +ESV +G + + +LR++GI L++ Sbjct: 611 SPRQFGDPQLAFHVIGALNRSGLPAHRLELEITESVTLGATHKIVETINKLRQLGIRLSI 670 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LS L FD +K + S ++ + AI+R+I+ M ++I I+ + + Sbjct: 671 DDFGTGYSSLSSLRNFAFDKLKIDRSFVSDLDRKAESTAIIRAIVGMGRSIGMAIVVEGV 730 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 E + L GCD IQ + P+ I +L PL + Sbjct: 731 ETETQLSILRTEGCDLIQGYVFSRPVAAPQIRTMLAAAGPLTR 773 >gi|148545672|ref|YP_001265774.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148509730|gb|ABQ76590.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida F1] Length = 1247 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 272/580 (46%), Gaps = 12/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + G + + + + + + + V DI + + I G Sbjct: 658 ITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717 Query: 441 AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + ++ R H D + + G Q E + + + + + I Sbjct: 718 SEIEALGQTPRLLASGQH--DSAFYLAMWHQLTAE--GHWQGEIYNKRKNGELYPSWLTI 773 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + NS+ +I ++ + DI+ K + + A D LTG+PNR F +RL +L + Sbjct: 774 SAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQ 833 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + + V+ +D+D++K IND LG VGD +L + +R+ E ++ D +ARL G+ F I Sbjct: 834 VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + A + P E E +ASIG + + S +++NA+ Sbjct: 893 LLPGLHKPSDASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADA 952 Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY +K +G N VE++ + S+R+ ++ +L AVE +E+ L + P + L + +VG Sbjct: 953 AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVG 1012 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EALI+W HP +G + F+ +AEE I + ++LE+ R + +W+ P + Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHY-EPFGPLS 1071 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN+A L L ++ L+ ++L +E+ +M E + +L +L+K+G+ Sbjct: 1072 INLAGAQLRHPHLARRIEQLLKHYQLRAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQ 1131 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L +DDFGT S LSYL +P D +K + S + G AI R+II + ++++ TIIA Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954 + + + + L GC+ IQ V+ PL L+ Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFAAAFLR 1231 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 5/168 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + L+ ++ +VI I + + Q + S V I W+ Sbjct: 267 LLVYGLPTVLLLMAVLAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326 Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D +P +LG W +H D + DS R Sbjct: 327 ADANDFTYSYVSPHAEDLLGYPLSDWL-RPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD Q W+ + + +G G+ DI+E K++ + Sbjct: 385 SLDYRVIRADGQPLWIRNIVSMI--EHGHQPVMRGLMIDISETKRTED 430 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 8/171 (4%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424 L ++ + Q + + E+ + A S D + Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581 Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + G ++ + ++ +N+R L+ + Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNR----DGFVRDFTC 637 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +R +D Q + RP+ + + + IA DITE+ E + A Sbjct: 638 HIRRSDGQIRLCELSARPLPITG--VDCMLTIARDITERHLMQEKLQLAAT 686 >gi|270158864|ref|ZP_06187521.1| sensory box/GGDEF family protein [Legionella longbeachae D-4968] gi|269990889|gb|EEZ97143.1| sensory box/GGDEF family protein [Legionella longbeachae D-4968] Length = 766 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 148/585 (25%), Positives = 285/585 (48%), Gaps = 16/585 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRD---RVTTTPDIAT 436 IG ++ V + +Q + + E + A+ S V DI + + Sbjct: 187 IGSEIVGRVYSFRDITQKLLEEDELRIRERAIEASTLGVAIIDISKSNMPIIYVNKAFER 246 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 I G + + G L ++H + ++ L+ + R E + + W Sbjct: 247 ITGYSERQILGQN---LSFLHSSQVEHVSHKRLNFAIKELREE-TVEIECFKRNGEVFWA 302 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + P+ +S ++ YI I ND+T++++ + ++ A D+LT +PNR +DR+ + Sbjct: 303 EVSVAPVRDSFDNVKHYICIINDVTQRREMEQQLIQQATHDSLTELPNRVLLIDRVDQAI 362 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + ++ + +D+D +K ND LG ++GD +L +++ R+ D + RL G+ Sbjct: 363 LQAKKKGSI-LAFLFLDLDHFKMTNDTLGHSLGDRLLQAVSNRLLIATNDFDTVCRLGGD 421 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L + A + KSIA PI + + + +T SIG + + ++K Sbjct: 422 EFVILLHDIATEQQAEQKAEEILKSIANPIRIDQHNLKITGSIGISYYPKDGDDYESLMK 481 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+L+MYHAK G N S+ ++ +R+ + L +++ +E +LVY P+I L Sbjct: 482 NADLSMYHAKDSGRNTYRSYDKEMNMRIINRMQLDNALRDSLKRNEFHLVYQPLINLATN 541 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +I+G EAL++W G++S +EF+ +AEE +I I L+ L + ++SW Q Sbjct: 542 KIIGFEALLRWHSHILGDVSPTEFISMAEENGLILEIGLWALREACKQLVSWHQQ-GYSN 600 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +NI+ + + L E ++ + +T S ++L +ES+++ N + + + L+ Sbjct: 601 LTMAVNISGRQFRQSHLSEIIEKTLLETGLSAKYLELELTESLLVDNVKHAVETMYELKD 660 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G L +DDFGT S LSYL P D +K + S + E AI R+II + ++ Sbjct: 661 MGTKLVIDDFGTGYSSLSYLKQFPVDRLKIDRSFINELVNRENDAAITRAIINLGHSLNL 720 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++A+ + E+ ++ +T GCDY Q + +P + + + Sbjct: 721 EVLAEGVETELQLEFITNHGCDYAQGYYFTTPQKAEELKNFIIQH 765 >gi|127511912|ref|YP_001093109.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella loihica PV-4] gi|126637207|gb|ABO22850.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella loihica PV-4] Length = 816 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 136/583 (23%), Positives = 269/583 (46%), Gaps = 12/583 (2%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 + +L+ T I + + ++ R + + GD V D P Sbjct: 238 VAGMLLTLTDITSIKR---AKSQLDTENRRLKIMLNAIGDAVIATDSEAMITFMNPIAER 294 Query: 437 ILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHW 494 + G ++ I + + + + +R + ++ + D Sbjct: 295 LTGWVCRDAIGLHIEQVMDLCDAKTKYRSPNPVTIAIKEKRNVAMALNCQLNSLDGTTFQ 354 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + P+++S G + I + +D +E + A D LT +PNR DR+ Sbjct: 355 IEDSAAPITDSEGKVTGGIIVFHDCSESVAMSLKMSHLANHDQLTDLPNRILLHDRINHA 414 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 ++ + D +M+IDID +K +ND LG + GD V+ + +R+ L+ L R+ G Sbjct: 415 CAVADSYDK-SVALMLIDIDHFKYLNDSLGHSYGDQVIKQVAKRLQSLIDPNATLGRIGG 473 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F ++L S + ++ A + +S+ P + +E T++ S+G + + S + + E++ Sbjct: 474 DEFVLLLPSLTATSQVDSIATDIVRSLNTPFRIDGQEYTLSVSVGISIYPSDALRAEELM 533 Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 + + AMY AK G N F + R + L A++ + + Y P + L Sbjct: 534 THVDAAMYRAKDLGRNRFCYFSEDLEQELTKRHELVTLLRTAIDTEAIEVYYQPKVDLKT 593 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +EI+G EAL + P IS +F+ +AEE +I + +L++ +W+ + Sbjct: 594 KEIIGAEALARLYDPSGKLISPLDFIPLAEETGLIHQLGEIILKQSCMAAKAWQKRGR-- 651 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 P+ I +NIA+K + E C+ + ++ T S ++L +ES +M + + + +L L Sbjct: 652 PLQIAVNIAAKQFTNPEFCDSVAKVLELTGLDSSFLELEVTESSLMYDFDEALNVLNTLS 711 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 +G+S+ +DDFGT S LSYL + P +T+K + S + E+ + I++++I +AK+++ Sbjct: 712 SLGLSIAIDDFGTGYSSLSYLKFFPVNTLKIDQSFVKDMLGDEQSLDIVKAVIHLAKSLK 771 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ I +++L + C+ Q + PL +LL Sbjct: 772 LKLIAEGIEDAEQLQKLVALECEQGQGYMFSKPLPLKEFDQLL 814 >gi|268680858|ref|YP_003305289.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268618889|gb|ACZ13254.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 961 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 153/613 (24%), Positives = 283/613 (46%), Gaps = 25/613 (4%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER------QSLAVLGSGDI 417 +++ +LV ++IV++ +V L Y + + ++ + S D Sbjct: 350 ANLVIISLVIMCLIIVMMFLISVKLRSLLARYENHLLLNNKQIKEQKMVFETLYQKSADG 409 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTI-LDSFVGY 474 +W + I + ++ + + P + + ++ + + Sbjct: 410 IWLL-KEGLFIDCNEAIMKMFKTTDKQKLINVSLADLSPEFQPDGQSSYEKSRWMNSIAS 468 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI----- 529 + G ++E+ +A D W+ + + + + G I DIT +K E Sbjct: 469 KEGVHKFEWYAKACDGTLIWISVVMTTVMMNKGKIQHC--SIRDITARKALEEENKKQKK 526 Query: 530 --LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + D LTG+PNR DRLT + ++ D + VM +D+DK+K IND LG Sbjct: 527 LLMHQVEHDILTGLPNRNLLQDRLTQAIKKASRDGKV-LGVMFVDVDKFKNINDSLGHDA 585 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L ++ +R+ ++ D +ARLSG+ F ++L + I + + P Sbjct: 586 GDMLLKTIAKRMQHSIRETDTVARLSGDEFIVLLDGCKDVNDIFVAIKKLINAFQEPFIF 645 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 VT SIG + + + +S++LKNA++AMY AK +G N F + + Sbjct: 646 GNESFKVTMSIGVSVYPNDGELASKLLKNADIAMYKAKSQGRNRYIFFDQEMNQETNEHL 705 Query: 708 KED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + + L A+ N E L Y P + L +I+G EAL++W HPK G + F+ +AEE Sbjct: 706 EVEKSLHKALVNQEFVLHYQPQVNLKSGKIIGFEALLRWKHPKRGLTAPGYFIHVAEESE 765 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++++ + R + W D+ P + INIA K L N L + + ++ P Sbjct: 766 LIIEIGNWVIKEVMRQLKEWHDKGLRPG-KVAINIAGKQLESNHLIAFILQNLKESGCRP 824 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 I+L E +M + +S LL R R++G+ +++DDFGT S L+YL +P +K + Sbjct: 825 EWIELEIVERFIMKDATKSIALLKRFRELGLDISIDDFGTGHSSLAYLKELPITKLKIDQ 884 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + + + AI R+II + + + ++A+ + + + + GCD IQ + P Sbjct: 885 SFVQNLENSSEDRAIARTIIELGRGLGLVVLAEGVETKAQKELIHSSGCDLIQGYVFSKP 944 Query: 944 LGFNSILKLLKER 956 + S+ ++LK + Sbjct: 945 VDAKSVEEMLKNQ 957 >gi|182434502|ref|YP_001822221.1| hypothetical protein SGR_709 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775027|ref|ZP_08234292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces cf. griseus XylebKG-1] gi|178463018|dbj|BAG17538.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655360|gb|EGE40206.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces cf. griseus XylebKG-1] Length = 724 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 140/603 (23%), Positives = 260/603 (43%), Gaps = 16/603 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 R+ + + + + A Q + + R + + Sbjct: 123 RIQHTLAAGFTGALRERTLAEQEAIARSALTARSDAEQALHATEARFRAVFKDAAIGIGI 182 Query: 421 WDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D+ + + + + G L + W +H D D V R Sbjct: 183 ADLDGNILEINDTLTKMFGGLEHHVRSHKVNEW---VHPEDSPQVWKYYDELVRGERDHY 239 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 + E D W + + + +S G + + D TE++ + A D LT Sbjct: 240 RVEKAYYRNDGTVLWTNLTVSLLRDSEGRPEYQLALMEDTTERRLLNLRLRYEATHDALT 299 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR F +RL L + +R + +D+D +K IND LG A GD +LV + R+ Sbjct: 300 GLPNRTLFFERLEKALT---AQEGIRFGLCYLDLDGFKAINDSLGHAAGDRLLVEVADRL 356 Query: 600 GELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 +++ARL G+ F + + + ++ + A + ++A PI L RE+TV SI Sbjct: 357 QSCATAPGEMVARLGGDEFVALTTGPDTAEEVDELAGRILNALASPIRLDGRELTVRGSI 416 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716 G S + +++E+L++A++ MY AK GGN + + + L A++ Sbjct: 417 GVVEGPSGERSAAEVLRSADITMYRAKAAGGNRYQLADAEADARAITRHGLTTALPAALD 476 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 E ++ Y P++ L D + G EAL++W HP+ G + F+ +AE +I + ++LE Sbjct: 477 RGEFFIEYQPLVHLDDGTVHGAEALVRWCHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLE 536 Query: 777 RIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 R W+++ + P+ I +N++ L L ++ ++ P + L +ES Sbjct: 537 ESVRQANFWQERHSDGGPLRINVNLSPTQLHHPRLVAETVDVLERSGLEPGALCLEVTES 596 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---- 891 ++G + L +L ++G+ + LDDFGT S L+ L +P +K + S G Sbjct: 597 ALIGADDDLLKPLRQLAEMGVDIALDDFGTGYSNLANLRRLPVSVLKLDRSFTRGMQQHP 656 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + I+ I+ +A ++E + + + ++L R+GCD Q + A P + I Sbjct: 657 ADPVDLKIVEGIVSLAHSLELAVTVEGVETGAQAEQLRRIGCDTAQGWYYARPGAPDRIH 716 Query: 951 KLL 953 LL Sbjct: 717 SLL 719 >gi|282862781|ref|ZP_06271842.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces sp. ACTE] gi|282562467|gb|EFB68008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces sp. ACTE] Length = 724 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 137/581 (23%), Positives = 252/581 (43%), Gaps = 16/581 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LA 441 + A Q + + R + + D+ + + + + G L Sbjct: 145 EAIARSALAARSQAEQALHATEARFRAVFKDAAIGIGIADLEGNILEINDTLTRMFGGLE 204 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + W +H D + D V R E D W + + Sbjct: 205 NHVRSHRVNEW---VHPEDSPHVWKYYDELVRGEREHYSVEKPYYRNDGTVLWTNLTVSL 261 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + ++ G + + D TE++ + A D LTG+PNR F +RL L Sbjct: 262 LRDAEGRPEYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALTH---R 318 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGII 620 + +R + +D+D +K IND LG A GD +LV + R+ +++ARL G+ F + Sbjct: 319 EGMRFGLCYLDLDGFKAINDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVAL 378 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + ++ + A + ++A PI L RE+TV SIG S + T++E+L++A++ Sbjct: 379 TTGQRTQEEVHELAGRILSALATPIRLDGRELTVRGSIGVVEGPSGERTAAEVLRSADIT 438 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK GGN + + L A++ E ++ Y P++ L D + G Sbjct: 439 MYRAKAAGGNRFALADAEADARAITRHGLTTALPTALDRGEFFIEYQPLVHLGDGSVHGA 498 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFIL 797 EAL++W HP+ G + F+ +AE +I + ++LE R W+ + P+ I Sbjct: 499 EALVRWCHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEESVRQANFWQERHTDGGPLRIN 558 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++ L L ++ ++ P + L +ES ++G + L +L ++G+ Sbjct: 559 VNLSPTQLHHPRLVAETVDVLERSGLEPGALCLEVTESALIGADDDLLKPLRQLAEMGVD 618 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETT 912 + LDDFGT S L+ L +P +K + S G + I+ I+ +A +++ Sbjct: 619 IALDDFGTGYSNLANLRRLPVSVLKLDRSFTQGMQQHPVDPVDLKIVEGIVSLAHSLDLA 678 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + + ++L ++GCD Q + A P + I LL Sbjct: 679 VTVEGVETGAQAEQLRQIGCDTAQGWYYARPGAPDRIHSLL 719 >gi|254513944|ref|ZP_05126005.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium NOR5-3] gi|219676187|gb|EED32552.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium NOR5-3] Length = 643 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 152/585 (25%), Positives = 276/585 (47%), Gaps = 32/585 (5%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGLAS 442 + Q + + D E + + + D+++ D + LG AS Sbjct: 64 LAQQISRRKELERRTQQDLELLNSVINATSDLIFYKDYAANDGRYLGCNESFINFLGRAS 123 Query: 443 GSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + IH D + + G E + + Sbjct: 124 KDIIRQTDRQFFSEKEVKLIHATD----------HIALKEGSHVVERWMEDPQGHRVLLS 173 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-------CNAFQDNLTGIPNRQSFLD 549 I++ +++ G++ +GIA DIT+QKK+ E + A D LTG+PNR +D Sbjct: 174 IKLSSFNDTQGNVRGVVGIARDITDQKKTEETLRFQQRSLEHLAHHDALTGLPNRLYLID 233 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 +L L LS + V+ +D+D +K IND LG ++GD+VL +++RR+ ++ D++ Sbjct: 234 KLNHAL-LSPDLNTASLAVLFLDLDHFKDINDSLGHSLGDEVLRAVSRRLSACVRKADVI 292 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL G+ F I+L +S+ + A + K P+ L +R + V+ SIG + +T Sbjct: 293 ARLGGDEFTIVLQGIGSSIIAVEVAQKILKVFQEPLTLSDRTLNVSTSIGISVSPGDGVT 352 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPI 727 + E+L+NA+ AMY AK G N + R+ ++ D+ A+ E ++ Y P Sbjct: 353 TEELLRNADAAMYRAKRSGRNTFMHYSPDMTERALARLSMESDMHTALARGEFHVAYQPQ 412 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + + E++G+EAL++W+H GNI EF+ IAEE +I A+ ++LE + + ++ Sbjct: 413 VDMRSGELMGVEALMRWEHSTRGNIPPEEFIPIAEENGLILAMGSWVLEEVCAEQKRLKN 472 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 I +N++ + LL+ E ++ ++S S S+++L +ESV++ PE + Sbjct: 473 AGL-SDIRYAVNVSGRQLLNPEFLALVEHIVSTKDCSGSQLELEITESVLLHEPELAAKA 531 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905 + R++GI++ +DDFGT S L+YL P + +K + S + AI ++II + Sbjct: 532 MQSFREMGIAIAIDDFGTGYSSLAYLKQYPLNRLKIDASFVRDIVVDPDDRAIAQTIIAL 591 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 ++ +IA+ + E L GC Q + P+ +L Sbjct: 592 GNALDLEVIAEGVETEEQRAMLVSDGCSLGQGYLFSKPISPADLL 636 >gi|229101383|ref|ZP_04232127.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] gi|228682088|gb|EEL36221.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] Length = 569 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 261/566 (46%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E + +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQNLWKRILNGK--VWRGEIQNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----GKKEFGIIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L +E+ ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNEHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCMTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + D + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPD--YQEGLRLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 420 LSVRSILRRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGLLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 QSMGCDYVQGFYYAKPLSVGELKEKL 565 >gi|17232389|ref|NP_488937.1| hypothetical protein all4897 [Nostoc sp. PCC 7120] gi|17134035|dbj|BAB76596.1| all4897 [Nostoc sp. PCC 7120] Length = 821 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 155/578 (26%), Positives = 278/578 (48%), Gaps = 8/578 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + + ++ V + DI+ ++ V P I + G+ + Sbjct: 243 LKSEIHEHKQTLETLAHSQKQFKAVVENTPDIIVRFNPQLCYVYVNPAIEKVTGILAQKF 302 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G L + V + ++E + + + R+ P Sbjct: 303 IGKTNVELNL--PQEICRIWDYKLQRVFKTGQQTEFESNLPTSWGT-KYYHTRLVPELAK 359 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + + + IA DIT K++ ++ +AF D+LTG+PNR F++RL L + + R Sbjct: 360 DSSVEFVLSIARDITALKQAEAKLIHDAFHDSLTGLPNRALFVERLERSLAVVKRHPDYR 419 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND LG +GD +L +L RR+ L+ D +AR+ G+ F I+L Sbjct: 420 FAVLFLDVDRFKVVNDSLGHMIGDQLLNALARRLEMCLRAGDTVARIGGDEFTILLDDLK 479 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + + + S+ NL E+ T SIG T++ + E++++A++AMY AK Sbjct: 480 DLNDVTNVVNRINMSLTGAFNLSGHEVFSTISIGITLSTNTYNLAEELIRDADIAMYRAK 539 Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G E F S + + ++ DL AVE E + Y PI+ L +I+G EAL++ Sbjct: 540 ALGKARHEIFDFSMYSQAAQLLQLEMDLRRAVERQEFQVHYQPIVSLETYKIIGFEALVR 599 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIAS 802 W HP+ G +S F+ +AEE +I I ++L R + +W+ + PP+ I +NI+S Sbjct: 600 WQHPQHGLVSPERFISLAEETGLIVPIGYWVLREACRQMRAWQLEFTTHPPLTISVNISS 659 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K L E ++ ++ T S +KL +E+V+M N E + +L +L+++ I L LDD Sbjct: 660 KQFSQPNLIEEIRKILQDTGLEASSLKLEITETVLMENHESATAMLLQLQQMNIQLHLDD 719 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FG S LSYL P +K + S + EK + I+++II +A ++ +IA+ + Sbjct: 720 FGIGYSSLSYLHRFPSSALKIDRSFVINLGADEKNLEIVQAIISLALSLNIDVIAEGVET 779 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 +++L C + Q + PL S+ L+ P Sbjct: 780 MEQLRQLQIKKCKHAQGYIFSQPLDSQSVDTLIASSLP 817 >gi|83748362|ref|ZP_00945386.1| Hypothetical Protein RRSL_01709 [Ralstonia solanacearum UW551] gi|83724984|gb|EAP72138.1| Hypothetical Protein RRSL_01709 [Ralstonia solanacearum UW551] Length = 1234 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 143/584 (24%), Positives = 260/584 (44%), Gaps = 24/584 (4%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437 + F +Q + + + V + D V P + Sbjct: 660 VALFGTMQDITERRESDEQLRL----LRRVVESVPSGISVADALQPDLPLVYVNPGFERM 715 Query: 438 LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 G + + G +L + RT L ++ R D Sbjct: 716 TGYRAEEVLGRNCRFLHSSEPGQPALNEVRTALRDASE-----IRVLLRNFRKDGHPFLN 770 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ +S G + Y+GI +D+TEQ+ + + +A D LTG+PNR DR+ + Sbjct: 771 NFLLSPVRDSRGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAV 830 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +++A R V +I+ID++K +ND LG +GD+VL + R+ + D +AR G+ Sbjct: 831 EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 889 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +++ + F A PI + E+ VTASIG A + + S +++ Sbjct: 890 VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGTDSETLVR 944 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AE+AMY+AK G N +E F S R+ ++ + A+E+ + L+Y P I Sbjct: 945 HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEHGQFRLLYQPQIDTRTG 1004 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I GLEALI+W HP G + + F+ +AEE ++ I ++L A+ +W + Sbjct: 1005 RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLSEAAQQRAAWHARGLGED 1064 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + I +N++ + + L + ++L +ES++M ER+ L +R+ Sbjct: 1065 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1124 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+YL +P D +K + + + AI +++ +A N+ Sbjct: 1125 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1184 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + L CD +Q + + PL +++ LL+ Sbjct: 1185 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1228 Score = 93.5 bits (231), Expect = 2e-16, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 6/165 (3%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 GG + L+ T + +A + + ER + D ++DWDI Sbjct: 389 QGGARDELSLLERTFNEMRMAIQRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 448 Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + +LG + + ++H D + F L + + R + RV Sbjct: 449 ASLHRLLGSDALLTSGDEDGVSRTLTFQQFVHPEDMEVFGRGLRAALHSDRNAWHHVCRV 508 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 A + IR +G +R +G DI+++ + Sbjct: 509 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEADLR 553 Score = 73.8 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 2/141 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + +A + W WD++RD T + + + + G Sbjct: 544 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSTGMYVLTCMPPG-PPPSFAQ 602 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R V E + D + W++ R N +++ Sbjct: 603 QAQFFTADSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 661 Query: 512 YIGIANDITEQKKSLEGILCN 532 G DITE+++S E + Sbjct: 662 LFGTMQDITERRESDEQLRLL 682 >gi|152992968|ref|YP_001358689.1| hypothetical protein SUN_1379 [Sulfurovum sp. NBC37-1] gi|151424829|dbj|BAF72332.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 703 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 143/567 (25%), Positives = 263/567 (46%), Gaps = 16/567 (2%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 +Q+ + D V D+ + + + + G + ++ + Sbjct: 141 QQAQVLEQIHDAVILLDMDGFIRSWNKGSEILFEYRADEVIGKN---FSILFSDNITSAY 197 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 S + G + E ++ + + + + N NG+ + + +DITEQKK+ Sbjct: 198 EKWISELKE-NGEYKGEMFLQKKSGEPLYAVFSFSLLKNQNGETTEVVSLIHDITEQKKA 256 Query: 526 LE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 + A D LT +PNR F DRL + +A + + ID+DK+K Sbjct: 257 EAVLQEQKNILRYQAHHDALTRLPNRVLFFDRLEQSIRKTARSEK-DFALFFIDLDKFKH 315 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG ++GD VL +RI E ++ D LARLSG+ F +I+ + + A + Sbjct: 316 INDSLGHSIGDRVLRVTAKRIKETIRQEDTLARLSGDEFTVIMEDLGHPEDASVLAEKIL 375 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P+ + E + ++ SIG + + + + +LK A+ AMY AK G N E + Sbjct: 376 LVLQKPMYIDEYTLYISGSIGISLYPQDAMDTESLLKYADTAMYKAKENGRNTFEFYAPE 435 Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +R+ +K L A+E EL + Y P I E I+G+EAL++W HP G + Sbjct: 436 MTEYALERIAMKTSLKEAIEKEELCVHYQPQIDARAECIIGVEALVRWQHPTRGLLHPEA 495 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I I+ +++ + + +W + + + + +NI+ K L + E + A Sbjct: 496 FISLAEDTGLIVDIDKWVMRTAMKQVSTWHQEGLVSDV-LALNISIKQLEGHNFMEEIAA 554 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + + P ++L E VM N + L L +GI +++DDFGT S LS L + Sbjct: 555 CLDDFDFKPKWLELEIPEGQVMKNHTETIERLKELSVMGIGISIDDFGTGYSSLSLLKRL 614 Query: 877 PFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 P + +K + S + E+ +AI+++II +A +++ +IA+ + + L GC I Sbjct: 615 PINRLKIDKSFIEFIPNEEDVAIVKAIIALANSLKLDVIAEGVETDDQKDFLVENGCTKI 674 Query: 936 QDSHVASPLGFNSILKLLKERFPLVKN 962 Q + + P+ + L++R + Sbjct: 675 QGYYYSRPIASEQMKHFLQKRQCASRT 701 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 25/173 (14%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 ER LA+ GS + DWD+V + +P +LG + W + D N Sbjct: 14 KERFELALCGSKTSILDWDMVNHTLYISPSWKEMLGYREDELPNAESTWKKLAYPRDIVN 73 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 L + R + R+R D + W++ R R + + G+ +R +G DITE+K Sbjct: 74 VMRSLKKHIREHRKVFENNHRLRHKDGHWIWVLGRARIIYDEAGNPIRMVGTHTDITEEK 133 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 + A L I V+++D+D + Sbjct: 134 ELQLKYSQQA---------------QVLEQI----------HDAVILLDMDGF 161 >gi|239927279|ref|ZP_04684232.1| hypothetical protein SghaA1_03553 [Streptomyces ghanaensis ATCC 14672] gi|291435620|ref|ZP_06575010.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291338515|gb|EFE65471.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 714 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 136/571 (23%), Positives = 259/571 (45%), Gaps = 17/571 (2%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 G +Q + + R G+ + D+ + + + + GL+ ++ G RN Sbjct: 142 GVVAQALHASEARFRAVFEGAAIGIGIADLEGNILQVNGALRRMFGLSEQALRG--RNVT 199 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + H +D + + V R E D W + + + +++G + Sbjct: 200 EWTHTDDAPQTWRLYEELVRGEREHYHLEKAFNRPDGTVLWTNLTVSLLRDADGAPQYQL 259 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + D TE++ + A D LTG+PNR F +RL L+ + R + +D+ Sbjct: 260 ALMEDTTERRLLNLRLRYEATHDALTGLPNRAFFFERLEKALN---AGEGQRFGLCYLDL 316 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIAD 632 D +K +ND LG A GD +LV + R+ +++ARL G+ F + + + + Sbjct: 317 DGFKTVNDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDTRRTVDE 376 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + ++ PI++ RE+TV SIG + + +++E+L++A++ MY AK GGN Sbjct: 377 LASRIMNALLAPISVDGRELTVRGSIGVVEGPAGERSAAEVLRSADITMYRAKSAGGNRF 436 Query: 693 ESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 E + + L A++ E ++ Y P++ L D + G EAL++W HP+ G Sbjct: 437 ELADPEADARAITRHGLTTSLPTALDRGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHG 496 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIASKDLL 806 +S F+ +AE +I + ++LE+ R WR++ P+ I +N++ L Sbjct: 497 VLSPDRFIPLAEHTGLIVPLGRWVLEQSVRQAREWRERHGGEEAVGPLRINVNLSPCQLT 556 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 L + ++ +T P + L +ES ++G + L RL ++G+ + LDDFGT Sbjct: 557 HPGLVQDTVDILERTGVEPEALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDDFGTG 616 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 S L+ L +P +K + S + I+ I+ +A +++ + + + Sbjct: 617 YSNLANLRRLPVSVLKLDRSFTQSMQQFPADPVDLKIVEGIVSLAHSLDLAVTVEGVETG 676 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++L +GCD Q + A P + +L Sbjct: 677 AQAEQLRILGCDTAQGWYYARPGPPERLHEL 707 >gi|149185939|ref|ZP_01864254.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] gi|148830500|gb|EDL48936.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] Length = 768 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 155/708 (21%), Positives = 301/708 (42%), Gaps = 25/708 (3%) Query: 266 IIFLFMY-LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324 + F+ Y L +R V + F + + + + Sbjct: 64 LAFIAGYNLFLDRRMRDVDERGLTWEVMRRHAFASGAKGGVWGGGLCALAVTGAGGQLAE 123 Query: 325 FIIYHGMKGYERA--VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382 A P +I + A++ + L Sbjct: 124 IWAALAFLMMVSAVSRYKAPLSTTAYIITATAGSMVAAMATFSFGLGAIMLATGVFACLG 183 Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATIL 438 + ++ + E S+ + G D +W D R + +P ++ + Sbjct: 184 VIESARVAISVRAAEVEMQEKSETVSMLLREFEDGQADWLWQIDTKRRLRSVSPRLSFAM 243 Query: 439 GLASGSMHGPIRNWLPYIHINDRD--NFRTILDSFVGY--RRGRLQYEFRVRAADNQFHW 494 G + G ++L I + F L R + Q W Sbjct: 244 GREIADIEGK--SFLQLISGDGWKTGQFPPSLHDLADRLKSRESFSGLVVKALVNGQVRW 301 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + PM + +G L + G+ +D+T Q++S E I A D LT +PNR + L Sbjct: 302 WEMSGTPMFDEDGKWLGFRGVGSDVTAQRESSEKIAYLARYDTLTQLPNRLQVNESLADA 361 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L + R +++ID+D++K +ND LG +GD +L + R+ L+ ++ RL G Sbjct: 362 LAYA-EKWRTRCALLMIDLDRFKAVNDSLGHLIGDQMLAQVAGRLKPLMDEGELCGRLGG 420 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F +I+ + ++ A A+ +++ P ++ + + V AS+G A E+L Sbjct: 421 DEFAVIIRDAADRRRVDTLAKAIISALSAPYHVNNQVLYVGASVGSAIGPRDGRNVEELL 480 Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 +NA+LA+Y AK GG + S +R +++ L A+E +E L Y P++ Sbjct: 481 RNADLALYRAKDEGGGVHCEYEPSLHSNAEERRVLEIALRSALEKNEFVLHYQPVVDANT 540 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS-WRDQANM 791 EE+V EAL +W+ + G IS ++F+ IAE+ +I I ++++ R+ W + Sbjct: 541 EELVSFEALARWNCEEHGFISPAKFIPIAEDTRLIVPIGTWVMQEACREAARNWPE---- 596 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + IN++ + L++ + + +S + P R+++ +ES+ M + +R L + Sbjct: 597 -NVKVNINVSPEQLVEPDFAGTVVRALSHSGLDPKRLEIEVTESIFMRDANVARKALEQC 655 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG---STEKRIAILRSIIPMAKN 908 +G S+ LDDFGT S L YL + F T+K + S + G ++ + +AI+R+++ MA + Sbjct: 656 MALGCSVALDDFGTGYSSLGYLRKLKFTTIKVDRSFVQGAAQNSPESLAIIRAVVAMADS 715 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + T A+ + + + + + +GC+ IQ H P+ K+ ++ Sbjct: 716 LGMTTTAEGVENDDEAEMIRHLGCNKIQGYHFGRPMPSEDARKIFAQK 763 >gi|255318187|ref|ZP_05359426.1| two-component response regulator [Acinetobacter radioresistens SK82] gi|262379605|ref|ZP_06072761.1| two-component response regulator [Acinetobacter radioresistens SH164] gi|255304733|gb|EET83911.1| two-component response regulator [Acinetobacter radioresistens SK82] gi|262299062|gb|EEY86975.1| two-component response regulator [Acinetobacter radioresistens SH164] Length = 855 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 139/560 (24%), Positives = 259/560 (46%), Gaps = 16/560 (2%) Query: 401 FSDGERQSLA---VLGSGDIVWDWDI--VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + E L V S + + D R V P + G + G ++L Sbjct: 292 RKNQEHLRLLKRGVNASPNGIIITDATAERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQG 351 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 ++ + + +Q + D + W + + P+ + G ++GI Sbjct: 352 --PETEAEKIALVQQALKEHKE-IQVTVKNYRKDGSWFWNRLMLGPVFDEAGRCTHFLGI 408 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DIT+Q+ + I D+LTG+ NRQ+F L + + ID+D Sbjct: 409 QEDITQQRIHEDYITHQHSHDHLTGLANRQTFETNLQQAFETQHHSSKPLF-LCYIDLDD 467 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG +GD ++ S++ R+ LL+ D L R +G+ F +++++ N ++ A Sbjct: 468 FKPLNDSLGHLIGDQIIKSVSDRLQALLQTGDFLGRFAGDEFALLMVNRNKRSEVITTAE 527 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + K P + E +I ++ASIG + S SSE+L +A LAM AK +G N + Sbjct: 528 EILKLFTQPFQIDEHKIHLSASIGIVADDCSIQRSSELLYHAVLAMKEAKRQGRNTWHWY 587 Query: 696 RVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 ++ + ++ +L A+ +++ L Y P+I G+EALI+W+HP+ G Sbjct: 588 EEANKKVMPEIDYAHLRLELMEALNDNQFNLFYQPLINPATGLAKGVEALIRWNHPQRGY 647 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I F+ +AE I AI ++L++ DI W + + + +NI+ Sbjct: 648 IFPDIFIPLAERTGQIVAIGQWVLKKACMDIAEWNK-THQSQLTVSVNISPLQFRRAGFL 706 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + ++ + + +P +K+ +E +V+ +R+ +L +R++G+ +++DDFGT S LS Sbjct: 707 QELEHALDISTLTPELLKIEVTEGMVIIGADRAIEILKSIRELGVQVSIDDFGTGYSSLS 766 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P + +K + S + TE AI++SII +A + ++A+ + L + Sbjct: 767 YLRRLPINQIKLDRSFIEHLTESDQDAAIVQSIIHLAHQLNLEVVAEGVETLKQAAFLYQ 826 Query: 930 MGCDYIQDSHVASPLGFNSI 949 GCD +Q A P + Sbjct: 827 QGCDLLQGYFYARPAPITEL 846 Score = 58.0 bits (139), Expect = 7e-06, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 12/154 (7%) Query: 386 VIQHVLATGYFSQGI-FSDGERQSLAVLGSG------DIVWDWDIVRDRVTTTPDIATIL 438 +++ A + + +R +++ S D +++ D V+T I+ Sbjct: 153 LLKQAAAMVALAIELDLERKQRIAISEKYSSFYTYHPDAIFEIDTQGIMVSTNIASRKII 212 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + + G ++ ++ RD + E A + W+ + Sbjct: 213 GFSDEQIRGK--HYSSFLPAEYRDIADKAFKEAMQGNAQYY--EIPAYHASGEMIWLDLT 268 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 P+ N + GIA DIT ++K+ E + Sbjct: 269 NLPIK-QNHQVTGVFGIARDITLRRKNQEHLRLL 301 >gi|228924095|ref|ZP_04087371.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835585|gb|EEM80950.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 864 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 171/811 (21%), Positives = 342/811 (42%), Gaps = 36/811 (4%) Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232 + + E + F + + +++ V + Y + + ++ Y Sbjct: 60 LSIHEQVIFSYKALPFFIIQYVLLFVGFAIKFIK--IYSIKGLAQFSFDSIFIVIMNIYF 117 Query: 233 SIDFGFLSKLV--NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGI 290 ++ F +LI ++ + ++I + + A + T + Sbjct: 118 TLTFILDLSSFRMLTKETWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILV 177 Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-----------GYERAVL 339 LF ++F I ASI+L I+Y K ++ Sbjct: 178 YGYIHLFQLNFGMKTSAEINYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDYIRF 237 Query: 340 LIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389 ++P + +I + L + + + Q + +++ Q Sbjct: 238 ILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQILIHTYEQLTTQL 297 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + +R D V+ ++ + ++ + Sbjct: 298 EGEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVAS 355 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + L +I D + + L R L E R + + ++++ I + P N ++ Sbjct: 356 YSLLHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEV 412 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + GIA DIT + + + AF D LTG+PNR+ F L IL+ + T+ N V+ Sbjct: 413 VGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DAAVI 471 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L + Sbjct: 472 FLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDIVARQGGDEFTILLPEMYSEKS 531 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A + + P + E+++T SIG A + +E++KNA++AMY AK G Sbjct: 532 AIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGK 591 Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N F +++ ++ +L A++ +E +L Y P + ++I+G EALI+W HP Sbjct: 592 NRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHP 651 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 K G +S ++F+ +AEE I + ++L + W +Q + + +N++ Sbjct: 652 KLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNH 710 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 +L + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT Sbjct: 711 ADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGY 770 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P +T+K + G + AI+ SII ++K + +IA+ + + + Sbjct: 771 SSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLKVIAEGVETAEEWE 830 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L + CD+IQ ++ P+ + LL ++ Sbjct: 831 FLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 861 >gi|239904846|ref|YP_002951584.1| putative response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239794709|dbj|BAH73698.1| putative response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 801 Score = 515 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 145/552 (26%), Positives = 264/552 (47%), Gaps = 15/552 (2%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN--FRTIL 468 + S + D A + GL G + + R Sbjct: 257 LGLSAEGFCVIDAEDRLRFLNASAARMFGLPGLPEPGTPLSDAL---PQELAASLVRDAS 313 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLE 527 + + F + Q +++ + PM + + + GI DIT++K+ Sbjct: 314 RVIAWNEPVKKETTFAI---GGQDKTLLVSLFPMGLDESRRLAG--GIVTDITDRKQLES 368 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + AF D LTG+PNR LDR+ L+ S DN + V+ +D+D++K +ND LG V Sbjct: 369 QLAHMAFHDPLTGLPNRSLCLDRIRQALERSKRRDNYQYAVIFLDLDRFKIVNDSLGHHV 428 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L S+ RR+ + ++ D +ARL G+ F ++L + ++ +R +++ L Sbjct: 429 GDRLLESVARRLRDCVRSLDTVARLGGDEFVVVLEETGSYREVVRIIKRIRDAMSEVFPL 488 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRV 705 ++ V+AS+G + E+L+NA +A++ AK G N + F + Sbjct: 489 SGHDVHVSASMGIVVSPAIYEKPEELLRNANIALHRAKDEGRNRFKVFNTRMLEDAIRLM 548 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ DL A++ E YL Y PI+ L D + G EAL++W P G EF+ + E+ Sbjct: 549 DLESDLRAALKRGEFYLDYQPILALRDRRVTGFEALVRWRRPGKGIAPPGEFIPVCEDTG 608 Query: 766 MIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + L++L R + SW+ + + + +N+++K L L E ++ ++ T Sbjct: 609 LIVPLGLWVLTEACRTMASWQARFPETAGMSMSVNLSAKQLSQPSLVEDVERILRDTGMD 668 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P +KL +E+V+M NPE S L L RL+ +G+ L++DDFGT S LSYL P DT+K + Sbjct: 669 PRALKLEITETVIMDNPEVSILRLKRLKALGVRLSVDDFGTGYSSLSYLQRFPIDTLKVD 728 Query: 885 GSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + ++ + I+ +++ +A ++ ++A+ + E LT C+ Q + P Sbjct: 729 RAFVSDLDTSENRKIVGAVVALAHSLGLDVVAEGVELETQSDVLTGFACEAGQGFLFSRP 788 Query: 944 LGFNSILKLLKE 955 + + ++L+E Sbjct: 789 VCKEDVERMLRE 800 Score = 51.5 bits (122), Expect = 7e-04, Method: Composition-based stats. Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 4/130 (3%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 I I+ LA + + R S + D P + Sbjct: 107 IDSQALIVAIESSLARKRAEEALRQSEARSRAIFAASPTPLCLVDGHNAIADVNPAATRL 166 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + ++ G + D +++D+ G ++ + + Sbjct: 167 FGHCADALRGQPAQ--DFFAARDAATLLSVIDAAANGEAGHVRLS--GLRPEGGVFPAAV 222 Query: 498 RIRPMSNSNG 507 P+ ++ G Sbjct: 223 AASPLPDAAG 232 >gi|114321079|ref|YP_742762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114227473|gb|ABI57272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 735 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 145/579 (25%), Positives = 262/579 (45%), Gaps = 12/579 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + + + +R D V+ D+ ++GL Sbjct: 158 AGLVALAVERQLDRRALQEAEQRYRSLFTEHPDAVFQVDLEGRLRAANRSATRLIGLPES 217 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G R++ ++ DR ++ + E + R A+ + I P+ Sbjct: 218 ELLG--RHYHAFVFSEDRRRSDAAFEAVCRGKAQHY--EVQARTANGSKVELEITNLPII 273 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + ++ GIA D+T +K+ + A D +TG+PNR+ F RL L ++ Sbjct: 274 -VDDRVVGIYGIARDVTLRKQYEARLAYYASHDTITGLPNRREFESRLRHDFYLCRQHND 332 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 L V+ ID+D +K +ND LG A GD +LV+ RR+ LL D L+R G+ F ++L Sbjct: 333 L-LAVLYIDLDDFKPVNDSLGHAFGDQLLVAAARRLERLLGPSDTLSRFGGDEFVMLLPG 391 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + +L E+ ++ASIG A + EM++ A AM Sbjct: 392 LSGEAEALAVADRVLTLFKRSHSLGRHEVHISASIGIALNHRDVKSPEEMVQFANRAMQQ 451 Query: 684 AKHRGGNHVESFRVS---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G N + + + + ++ DL A+ +L L Y P++ + +EA Sbjct: 452 AKQQGRNTWRRYAGELGTRAQGEDISLRRDLQEAIAGDQLMLHYQPVVDAATGYLHSVEA 511 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G I F+ +AE+ I I ++L R RD+ + + + + +NI Sbjct: 512 LVRWQHPERGLIPPGVFIPLAEQTGQIIDIGHWILHRACRDMADLKARTGRT-LPVAVNI 570 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + + ++S++ ++L +E V+M + E + L LR +G+ + Sbjct: 571 SPLQFRRPGFLDNLAQVLSESGLPAETLELELTEGVLMADTEATIDTLAALRSLGVHAAI 630 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL Y+P D VK + S + ++ AI++ +I MA ++E ++A+ I Sbjct: 631 DDFGTGFSSLSYLRYLPIDKVKLDRSFIQDVTNSRNTAAIVQGVITMAHHLELAVVAEGI 690 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 E ++L GCD +Q A P+ + + L E F Sbjct: 691 ETEAQRRDLQDRGCDLLQGFFFARPMPLTVLRRRLAEPF 729 >gi|228946170|ref|ZP_04108504.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228813516|gb|EEM59803.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 785 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 158/755 (20%), Positives = 307/755 (40%), Gaps = 22/755 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 38 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 94 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 152 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + + L L + + Sbjct: 153 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 212 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q S + + ER D + D + + +LG S Sbjct: 213 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 272 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502 ++ G D+ L +G R + RV+ + + + I P+ Sbjct: 273 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNGKDIYFWYVTIVPI 328 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G + DIT+ K+ + I AF D +T I NR F L ++ + Sbjct: 329 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 387 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID++++K IND +G ++GD VL + +R L LAR+ G+ F +++ Sbjct: 388 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 446 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 447 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 505 Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + +++G EA Sbjct: 506 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 565 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G IS EF+ IAEE I +I + L+ R + W + + IN+ Sbjct: 566 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKMGINL 624 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + + + ++I + + I L +E + M + + + L L+ G+ L++ Sbjct: 625 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 684 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P DT+K + + I+++II +A + +IA+ + Sbjct: 685 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 744 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C IQ + + P+ + + L Sbjct: 745 ETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 779 >gi|289166350|ref|YP_003456488.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae NSW150] gi|288859523|emb|CBJ13484.1| putative regulatory protein (GGDEF and EAL domains) [Legionella longbeachae NSW150] Length = 766 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 148/585 (25%), Positives = 285/585 (48%), Gaps = 16/585 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRD---RVTTTPDIAT 436 IG ++ V + +Q + + E + A+ S V DI + + Sbjct: 187 IGSEIVGRVYSFRDITQKLLEEDELRIRERAIEASTLGVAIIDISKSNMPIIYVNKAFER 246 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 I G + + G L ++H + ++ L+ + R E + + W Sbjct: 247 ITGYSERQILGQN---LSFLHSSQVEHVSHKRLNFAIKELREE-TVEIECFKRNGEVFWA 302 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + P+ +S ++ YI I ND+T++++ + ++ A D+LT +PNR +DR+ + Sbjct: 303 EVSVAPVRDSFDNVKHYICILNDVTQRREMEQQLIQQATHDSLTELPNRVLLIDRVDQAI 362 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + ++ + +D+D +K ND LG ++GD +L +++ R+ D + RL G+ Sbjct: 363 LQAKKKGSI-LAFLFLDLDHFKMTNDTLGHSLGDRLLQAVSNRLLIATNDFDTVCRLGGD 421 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L + A + KSIA PI + + + +T SIG + + ++K Sbjct: 422 EFVILLHDIATEQQAEQKAEEILKSIANPIRIDQHNLKITGSIGISYYPKDGDDYESLMK 481 Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+L+MYHAK G N S+ ++ +R+ + L +++ +E +LVY P+I L Sbjct: 482 NADLSMYHAKDSGRNTYRSYDKEMNMRIINRMQLDNALRDSLKRNEFHLVYQPLINLATN 541 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +I+G EAL++W G++S +EF+ +AEE +I I L+ L + ++SW Q Sbjct: 542 KIIGFEALLRWHSHILGDVSPTEFISMAEENGLILEIGLWALREACKQLVSWHQQ-GYSN 600 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +NI+ + + L E ++ + +T S ++L +ES+++ N + + + L+ Sbjct: 601 LTMAVNISGRQFRQSHLSEIIEKTLLETGLSAKYLELELTESLLVDNVKHAVETMYELKD 660 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G L +DDFGT S LSYL P D +K + S + E AI R+II + ++ Sbjct: 661 MGTKLVIDDFGTGYSSLSYLKQFPVDRLKIDRSFINELVNRENDAAITRAIINLGHSLNL 720 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++A+ + E+ ++ +T GCDY Q + +P + + + Sbjct: 721 EVLAEGVETELQLEFITNHGCDYAQGYYFTTPQKAEELKNFIIQH 765 >gi|228994021|ref|ZP_04153922.1| Sensory box/GGDEF [Bacillus pseudomycoides DSM 12442] gi|228765669|gb|EEM14322.1| Sensory box/GGDEF [Bacillus pseudomycoides DSM 12442] Length = 840 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 152/805 (18%), Positives = 333/805 (41%), Gaps = 48/805 (5%) Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251 ++ ++ ++A F T+ Y L + +V +I + V + Sbjct: 37 FYLLFLISYIVAFFYTLMYESTTWKKLFTLCNVCIIVTALFTICYYLFISNVIHTNIMSP 96 Query: 252 IWRACSEI--------ALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 I + L ++F + L + A + ++ + + Sbjct: 97 IAPFVLLMYPMADLVFLLIGISLLFRPLSLMSKQVAALLSSALIFYAILDSVYAYIKYIK 156 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP-----AWILIFIWFIGLWMAI 358 P + I ++ + T+ + + + +L+ L + + + Sbjct: 157 PGYSMFIIAPFYQALFMMVTFACLIRTNAKQKPSQVLLTPKSGETIRLSLPYISVITLIT 216 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-------------------- 398 +++ +VG ++ ++ ++ Q Sbjct: 217 FILVEHTFSPVLVVGFIITFFFVLLRHLLIRRQNKRLLLQQLHFSQELEKQIELRTEDLV 276 Query: 399 ----GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 +F + D ++ D+ D + T+LG + + + Sbjct: 277 DQKNELFQSKQMFKSLYEHHPDPIFTLDLYGDFLNVNNAGTTLLGYQTNELLQKPCH--S 334 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 ++ D R + + R + +++ + P+ I Sbjct: 335 LVYEKDSQKVIDAFRHVKQGR--SISLDIRAYHKNRDIYYLHVTAVPIILKE-HITGIYL 391 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DITE ++ I A+ D LT + NR++F + + + + + V+ +D+D Sbjct: 392 MIKDITESEQQQRQINFLAYHDTLTELANRRAFQEYRESAIIKAKK-EQESFAVIFLDLD 450 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND LG +GD +L+++ +R+ ++ K + RL+G+ F +++ + ++ A Sbjct: 451 RFKIINDTLGHRIGDLLLIAVAKRLKQISKQNVKIVRLAGDEFTLLIEDYEENSEVQRVA 510 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + S+ P + + ++ SIG A + +L++A++AMY KH+G N Sbjct: 511 DNILSSMNKPFEIENHLLQISPSIGIAIYPEDGEDVMSILQHADMAMYETKHKGKNGSSF 570 Query: 695 FRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + I++DL LA+ N E +VY P I ++ ++++G EALI+W H G I Sbjct: 571 YTKELYEKIERKARIEKDLPLALANHEFSIVYQPQIDVVTKKVIGAEALIRWQHLDLGVI 630 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S EF+ IAEE I + +ML++ + + +W Q + + +N+++K+ + L + Sbjct: 631 SPCEFIPIAEETIQIIPLGHWMLKQTCQQLQAWH-QFGYTDLNMSVNLSAKEFQQDNLID 689 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ +T P + L +E + M + E + L L +L++ G+ ++DDFGT S L+Y Sbjct: 690 VILNILQETNLEPKFLTLELTERIAMIDEEETLLKLRQLKEYGVQTSIDDFGTGYSSLAY 749 Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K E+ AI+ +I+ +A ++ +++A+ I + ++ L Sbjct: 750 LSLYPINTLKVPREFTQMAEHREEEKAIVSTILSLANTLQLSVVAEGIETKEQLQFLQNN 809 Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955 GC Y+Q + + PL +K L++ Sbjct: 810 GCKYMQGYYSSKPLSGKEFMKFLQK 834 >gi|229171410|ref|ZP_04298995.1| Sensory box/GGDEF [Bacillus cereus MM3] gi|228612114|gb|EEK69351.1| Sensory box/GGDEF [Bacillus cereus MM3] Length = 569 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 142/566 (25%), Positives = 257/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRNGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQILWKRILNGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNEMIA-----GKKEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G ++ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCAYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL + + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALARCSTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + D + + +N++ + L+ Sbjct: 362 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPD--YEEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 LSVRSILRRTGFPPNRLILEVTESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 QSMGCDYVQGFYYAKPLSVGELKEKL 565 >gi|239945878|ref|ZP_04697815.1| hypothetical protein SrosN15_33126 [Streptomyces roseosporus NRRL 15998] gi|239992347|ref|ZP_04713011.1| hypothetical protein SrosN1_33933 [Streptomyces roseosporus NRRL 11379] gi|291449335|ref|ZP_06588725.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291352282|gb|EFE79186.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 724 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 138/603 (22%), Positives = 260/603 (43%), Gaps = 16/603 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 R+ + + + + A + + + + R + + Sbjct: 123 RIQHTLAAGFTGALRERTLAEQEAIARSALTARSHAEEALHATEARFRAVFKDAAIGIGI 182 Query: 421 WDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D+ + + + + G L + W +H D D V R Sbjct: 183 ADLDGNILEINDTLTRMFGGLEHHVRSHKVNEW---VHPEDSPQVWKYYDELVRGEREHY 239 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 + E D W + + + +S G + + D TE++ + A D LT Sbjct: 240 RVEKAYYRNDGTVLWTNLTVSLLRDSEGRPEYQLALMEDTTERRLLNLRLRYEATHDALT 299 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR F +RL L + R + +D+D +K IND LG A GD +LV + R+ Sbjct: 300 GLPNRTLFFERLEKALT---AQEGGRFGLCYLDLDGFKAINDSLGHAAGDRLLVEVADRL 356 Query: 600 GELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 +++ARL G+ F + + + ++ + A + ++A PI L RE++V SI Sbjct: 357 QSCATAPGEMVARLGGDEFVALTTGPDTAEEVHELAGRILNALATPIRLDGRELSVRGSI 416 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE--SFRVSSFRSDRVMIKEDLCLAVE 716 G + + +++E+L++A++ MY AK GGN + R + L A++ Sbjct: 417 GIVEGPAGERSAAEVLRSADITMYRAKAAGGNRFQLADAEADERAITRHGLTTALPAALD 476 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 E ++ Y P++ L D + G EAL++W HP+ G + F+ +AE +I + ++LE Sbjct: 477 RGEFFIEYQPLVHLGDGTVHGAEALVRWCHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLE 536 Query: 777 RIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 R W+++ + P+ I +N++ L L ++ ++ P + L +ES Sbjct: 537 ESVRQANFWQERHSDGGPLRINVNLSPTQLHHPRLVAETVDVLERSGLEPGALCLEVTES 596 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---- 891 ++G + L +L ++G+ + LDDFGT S L+ L +P +K + S G Sbjct: 597 ALIGADDDLLKPLRQLAEMGVDIALDDFGTGYSNLANLRRLPVSVLKLDRSFTRGMQQHP 656 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + I+ I+ +A ++E + + + ++L R+GCD Q + A P + I Sbjct: 657 ADPVDLKIVEGIVSLAHSLELAVTVEGVETGAQAEQLRRIGCDTAQGWYYARPGAPDRIQ 716 Query: 951 KLL 953 LL Sbjct: 717 SLL 719 >gi|289678106|ref|ZP_06498996.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 748 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 155/703 (22%), Positives = 298/703 (42%), Gaps = 62/703 (8%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 A L +S Y +V +IY ++G+ + + Sbjct: 61 AWLRMISSYGDVVLVGQDSPANTMETNSSGSTLIYVAIRGFRHE----------LLGAML 110 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410 L + + + + AL + + + ER L Sbjct: 111 LRNSDQAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164 Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 V+ + D + D+ V P I G + G L Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC--EETSRAT 222 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523 ++ + + R ++ E D W+ + I P++N G ++ + DITE+K Sbjct: 223 LDVIREALSHWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERKE 281 Query: 524 --------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD- 556 + E + AF D LT + NR ++ LTT + Sbjct: 282 SQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEI 341 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + + R TV+ +D+D +K +ND +G GD +L ++ R+ ++ D+LAR+ G+ Sbjct: 342 RAPRYE--RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDE 399 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L+ ++ A + + I + ++I ++ SIG + S E+L++ Sbjct: 400 FAILLMGKDQPETAVKMAERIVSQLHTAIQIENQDIFISCSIGIVTAGDSHTKPEELLRD 459 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMY AK +G F S D ++I+ L A+E+ + + Y PI E Sbjct: 460 ADVAMYSAKKQGRGRWSIFNTSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGNCEH 519 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG+EAL++W+H G IS F+ IAE+L +I + +++ + ++ +WR + + + Sbjct: 520 LVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDL 579 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ K+L + + +I+ T ++++ +ESV + P+ +L ++R++ Sbjct: 580 RLNVNVSGKELSHPGFVDQVTRIIATTGLPAGQLQIEVTESVFLYQPDAIAEVLRQIRQL 639 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912 G+ + LDDFGT S L Y+ P D VK + S ++ E+ AI+ SI+ + + + Sbjct: 640 GVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLD 699 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I A+ + L +MGC Y Q + P+ ++L ++K Sbjct: 700 ITAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742 >gi|290955706|ref|YP_003486888.1| hypothetical protein SCAB_11501 [Streptomyces scabiei 87.22] gi|260645232|emb|CBG68318.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 714 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 139/626 (22%), Positives = 265/626 (42%), Gaps = 24/626 (3%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-----G 399 + ++ G R +Q A+ G + + + +Q Sbjct: 88 AYLVLYCGGDGPQEDLRARAGRLQSAMAAGFAEALRQRTLAEQEAIARAALEAQGAVALA 147 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHI 458 + + R G+ + D+ + + + + GL +M G + W H Sbjct: 148 LHATEARFRAVFEGAAIGIGIADLDGNILQVNGALLRMFGLTEQAMRGRRVPEWK---HA 204 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + D VG R E D W + + + +++G + + D Sbjct: 205 EDAPQVWRLYDELVGGEREHYHTEKAFHRPDGTVLWTNLTVSLLRDADGRPQYQLALMED 264 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 TE++ + A D LTG+PNR F +RL L D R + +D+D +K Sbjct: 265 TTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALA---AGDGQRFGLCYLDLDGFKT 321 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG A GD +LV + R+ +++ARL G+ F + + ++ D A + Sbjct: 322 INDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGTDTEREVDDLADRI 381 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++ P+ + RE+ V SIG + + +E+L++A++ MY AK GGN E Sbjct: 382 MNALVTPVRIEGRELLVRGSIGIVEGPAGERGPAEVLRSADITMYRAKSAGGNRYEVADA 441 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + L A++ E ++ Y P++ L D + G EAL++W HP+ G + Sbjct: 442 EADARAITRHGLTTALPAALDRGEFFIEYQPLVHLGDGTVRGAEALVRWLHPQHGVLGPD 501 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIASKDLLDNELC 811 F+ +AE +I + ++LE+ R +W+++ P+ + +N++ L L Sbjct: 502 RFIPLAERTGLIVPLGRWVLEQSVRQARAWQERGGGTRAAGPLRVNVNLSPCQLTHPGLV 561 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + ++ + P + L +ES ++G + L RL ++G+ + LDDFGT S L+ Sbjct: 562 QDTVDILERAGLPPDALCLEVTESALIGADDDLLKPLRRLSEMGVDIALDDFGTGYSNLA 621 Query: 872 YLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L +P +K + S + I+ I+ +A +++ + + + ++ Sbjct: 622 NLRRLPVRVLKLDRSFTQSMQRFPADPVDLKIVEGIVSLAHSLDLAVTVEGVETGAQAEQ 681 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952 L +GCD Q + A P + + +L Sbjct: 682 LRILGCDTAQGWYYARPGPPDRLHEL 707 >gi|83647197|ref|YP_435632.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83635240|gb|ABC31207.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 636 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 142/584 (24%), Positives = 266/584 (45%), Gaps = 24/584 (4%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q + Q + + + + + D + +D + + + Sbjct: 61 LKQQLQEISTTKQELENSVSLLNATLNSTCDGIIVFDQDNRVIACNNVFLKMFDMRQEVA 120 Query: 446 HGPIRNWLPYIHINDRDNFRTI--------LDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 ++ +I R+ + + + R E D +F Sbjct: 121 ENINKH---HIRPYLREKVKNLDELTRLWEFNKRFNQRSSYCLLEM----KDGRFIDCYT 173 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 R G +L + +DITE K S + L +++ DNLTG+PNR F +RLT ++ Sbjct: 174 NPRIH---EGKVLGRVWSLSDITELKLSEQQALFHSYHDNLTGLPNRTLFHERLTHAIER 230 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 VM +D+D +K IND G+ GD +L +RI E L +AR G+ F Sbjct: 231 RGVQQR-DLAVMFLDLDGFKDINDSTGLETGDQLLQMAAQRIKETLPPETTVARYGGDEF 289 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L + S + + +R +I P + ++ +T SIG A + + + +++ A Sbjct: 290 IVLLENIKTSFEATLVSERLRSAIDRPFTVDDQTFHLTCSIGIALYPTDSRDADALIRKA 349 Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AM HAK RG N+ + F S R+ I+ +L A+E +E L+Y P I L I Sbjct: 350 DMAMNHAKSRGRNNCQFFADEFEILTSHRLRIRNNLKSALEKNEFNLLYQPKIALHSNMI 409 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G+EALI+W P +S +EF+ AEE +I I ++ E + + W + + Sbjct: 410 IGVEALIRWRRPSGEVVSPAEFIPAAEENGLIIDIGNWVTEEACKQLQRWGRENHH-NFS 468 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + INI+ ++ + + + P +++ +ES +M + E + +L LRK+G Sbjct: 469 VAINISPFHFQHADILSTITQALRRYSVRPELLEIELTESALMEDIEHTIEILAELRKLG 528 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 IS ++DDFG S L+YL +P DT+K + + +++ +A++ ++I +A +++ + Sbjct: 529 ISCSVDDFGAGYSSLNYLKRLPVDTLKIDKMFIDDITKSQRDLALVDTMINLAHHLDMLV 588 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +A+ + E + L CD Q + + P+ I ++L R Sbjct: 589 VAEGVETEETVHLLKEKRCDLAQGYYFSRPVSGKVISEMLTTRL 632 >gi|229018938|ref|ZP_04175781.1| Sensory box/GGDEF [Bacillus cereus AH1273] gi|229025182|ref|ZP_04181606.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228736115|gb|EEL86686.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228742381|gb|EEL92538.1| Sensory box/GGDEF [Bacillus cereus AH1273] Length = 883 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 157/736 (21%), Positives = 316/736 (42%), Gaps = 50/736 (6%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + H V + + L ++ Sbjct: 168 PTVFKSKWKIYIFVFVLISSAAFNYIYFYLNTHLSHDTVALLRLLYRIPLL-LVAIAASI 226 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363 P + ++ + VL + + + + + ++ Sbjct: 227 PSGLTNNTSYSIVNPVLGKKVLVTF-----------------PYLVVAFLIGFTLKEQTA 269 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS---------------------QGIFS 402 + I+ V ++I +Q+ T + + Sbjct: 270 SSILITGNCITFVFVLIRHSIGRMQNKSLTERLQFFNAQLEEKVAVRTSDLVQKSEALSQ 329 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 ++ D ++ D+ + +LG+A+ + G L I D+ Sbjct: 330 KQQKFESLYEYHPDPIFTIDLNGIFLNVNKAGGMLLGVATSELFGKTC--LSIILDEDKH 387 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + L+ LQ R + + +++ + I P+ +G I + DIT Sbjct: 388 KLASALEKIKKQEPTSLQL--RSQYNNGFTYFLYVTIVPIM-IDGQISGSYIMVKDITAL 444 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 KK E I AF D +T I NR F +L ++ + D+ ++ +D+D++K IND Sbjct: 445 KKQQEEIKYLAFHDTVTKIGNRAFFHKKLKKVIKNAKITDS-EFALLYLDLDRFKAINDT 503 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG + GD +L ++ R L L+R+ G+ F I++ + + + + + Sbjct: 504 LGHSSGDYILEEVSNRFQSCLPSHTHLSRIGGDEFTILIEDYTDEDSLFQLCNQLFECMK 563 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700 P + E ++T++ SIG A + S I ++ +LKNA +AMY AK + ++ Sbjct: 564 KPFVIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIARK 623 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ I Sbjct: 624 IERRLRLEKDLPNAIQNEELFLLYQPQVDSGSNKIIGAEALIRWNHPELGVISPYEFIPI 683 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE I I + L++ + W + I +N+++K+ + + + + ++ Sbjct: 684 AEETLQIIPIGKWTLQQACEQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLAT 742 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T S + L +E + M + + + L L+ +GI +++DDFGT S L+YL P DT Sbjct: 743 TGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDT 802 Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + + + E + I+++II +A + ++IA+ + + + L + C +IQ Sbjct: 803 LKIPREFITMSETCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCHFIQGY 862 Query: 939 HVASPLGFNSILKLLK 954 + + P+ N+ +LL+ Sbjct: 863 YYSKPIHTNAFTELLE 878 >gi|197118504|ref|YP_002138931.1| response receiver sensor diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] gi|197087864|gb|ACH39135.1| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 953 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 135/568 (23%), Positives = 262/568 (46%), Gaps = 10/568 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + + D R + V S D + D + + G + M G Sbjct: 383 LFKDISERKRLEEDRARLAAIVESSDDAIMAVDREGAITSWNAGAEKMFGYPAQDMKGVH 442 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 ++L + ++ L+ + E + ++ + + P+ +++G + Sbjct: 443 LSFL--VSPEKKEQVT-CLNDGIRSDGAVTHCEVVHVTRGGRQIYVSLTMSPIKSADGGV 499 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + IA D+TE+ + E I A D LT +PNR+ F D L L + + V+ Sbjct: 500 VGTSCIARDVTERTRMEEIIKHQAQHDTLTDLPNRKLFGDFLNLELAQARRNRK-SLAVL 558 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K++ND LG A GD +L ++ +R+ ++ D +AR+SG+ F +++ + Sbjct: 559 FMDLDRFKQVNDTLGHAAGDRLLQAVAQRLKRCVRESDTVARISGDEFNVLMPDLAQTDD 618 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + + P L E+ VT S+G + + ++ E+L+ A+ AMY AK G Sbjct: 619 VGIVVGKIMGVFRTPFVLEGAELKVTTSVGVSMFPDDGDSAQELLQKADGAMYVAKQTPG 678 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + + ++ L AV +EL LVY P++ L EIVG EAL++W HP Sbjct: 679 NSYQFYNGEINARTVARQNMERRLREAVSKNELDLVYQPLLSLKSGEIVGAEALLRWHHP 738 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G + S+F+ +AEE I I ++L R + W+ Q + + +N+++++ Sbjct: 739 EHGQLLPSQFLPVAEETGAIVPIGEWVLFNACRQMRLWQSQGFD--LSVAVNLSNREFHQ 796 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + +S++ P+ ++L +E +M NP S + RL IG++ ++DDFG Sbjct: 797 PNFIDLAMRALSQSGLDPASLELDVTEKAIMDNPAFSLRNMRRLTDIGVAFSVDDFGVGA 856 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LS + +P VK + S + + ++ ++I M+ +++ + A + + Sbjct: 857 SSLSRIKELPIAKVKIDRSFIRDILTEPNDLDVVSAVICMSHSLKMRVNAVGVESAEQLA 916 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 + GCD +Q ++ PL + +LL Sbjct: 917 LVGSFGCDEVQGDLISRPLPPHEFERLL 944 Score = 94.2 bits (233), Expect = 1e-16, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 1/130 (0%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + I ++ S A + W+W++ + + ++ ILGL S L +H Sbjct: 142 ERIRRREQQLSQAERITHLGSWEWNLETGQAVWSDELYRILGLVPESAPATFEALLQMVH 201 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DR+ + + +R+ AD + + ++ + + +G IG + Sbjct: 202 PADREALEKAVQQLRETGSAMGIHYYRLLRADGETRIVRGQLESVRDGSGRQT-VIGACH 260 Query: 518 DITEQKKSLE 527 D+TE K + Sbjct: 261 DVTELKWAEA 270 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 6/146 (4%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHG 447 V + + + R S + D++ + + LG + G Sbjct: 261 DVTELKWAEAALRASERRFSKIFQATPDLLSITSLTDGTILEVNEAFLRALGYQRQEVIG 320 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L +D+ L + R E R++ + + ++ + NG Sbjct: 321 TYAGELGLWADSDQP---AALLQQLEVRGEVRDIEVRLKGRNGRELEGLVSAELI-EING 376 Query: 508 DILRYIGIANDITEQKKSLEGILCNA 533 + + + DI+E+K+ E A Sbjct: 377 NP-YLLTLFKDISERKRLEEDRARLA 401 >gi|302562228|ref|ZP_07314570.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000] gi|302479846|gb|EFL42939.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000] Length = 714 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 147/625 (23%), Positives = 271/625 (43%), Gaps = 22/625 (3%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH-----VLATGYFSQG 399 + ++ G R + +Q A+ G + + + A G +Q Sbjct: 88 AYLVLYCGGDGDREDLRARSARLQHAMAAGFAQALRARTLAEQEAIAQAALEAQGVVAQA 147 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + R G+ + D+ + + + + GL SM G RN + H + Sbjct: 148 LHATEARFRAVFEGAAIGIGIADLQGNVLQVNGALRRMFGLTEQSMRG--RNVKEWTHPD 205 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D + D V R E D W + + + + +GD + + D Sbjct: 206 DAPQTWRLYDELVHGDREHYHLEKAFYRPDGTVLWTNLTVSLLRDPDGDPQYQLALMEDT 265 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE++ + A D LTG+PNR F +RL L R + +D+D +K + Sbjct: 266 TERRLLNLRLRYEATHDALTGLPNRTFFFERLEKAL---GAGAGQRFGLCYLDLDGFKTV 322 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 ND LG A GD +LV + R+ +++ARL G+ F + + + + A + Sbjct: 323 NDSLGHAAGDRMLVEVADRLQACATAPGELVARLGGDEFVALTTGPDTERTVDELAGRIM 382 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++ PI++ RE+TV SIG + + +++E+L++A++ MY AK GGN E Sbjct: 383 NALLAPISVDGRELTVRGSIGIVEGPAGERSAAEVLRSADITMYRAKSAGGNRFELADPE 442 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + L A++ E ++ Y P++ L D + G EAL++W HP+ G +S Sbjct: 443 ADARAITRHGLTTALPTALDRGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLSPDR 502 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANM----PPIFILINIASKDLLDNELCE 812 F+ +AE +I + ++LE+ R WRD+ P+ I +N++ L L + Sbjct: 503 FIPLAEHTGLIVPLGRWVLEQSVRQAREWRDRHGGAEALGPLRINVNLSPCQLTHPGLVQ 562 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ +T P + L +ES ++G + L RL ++G+ + LDDFGT S L+ Sbjct: 563 DTVEILERTGMEPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDDFGTGYSNLAN 622 Query: 873 LGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L +P +K + S + I+ I+ +A +++ + + + ++L Sbjct: 623 LRRLPVSVLKLDRSFTQSMQRFPADPVDLKIVEGIVSLAHSLDLAVTVEGVETGAQAEQL 682 Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952 +GCD Q + A P + + L Sbjct: 683 RILGCDTAQGWYYARPGPPDRLHDL 707 >gi|89094327|ref|ZP_01167268.1| signal transduction protein containing membrane, EAL and GGDEF domains-like [Oceanospirillum sp. MED92] gi|89081386|gb|EAR60617.1| signal transduction protein containing membrane, EAL and GGDEF domains-like [Oceanospirillum sp. MED92] Length = 984 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 147/560 (26%), Positives = 257/560 (45%), Gaps = 12/560 (2%) Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 D E L V S + V D V P G G + + Sbjct: 425 RRDEEHIRLLSSTVEQSTNEVIITDTDGIIVYVNPMFTENTGYLPEEAIGRKSSIVQSG- 483 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 F L + + + E R + W + I P+ + G I Y+ + + Sbjct: 484 -EMSAEFYRNLWETIK-KDNCWKGEIINRKKSGEKFWQSMSISPIHDETGAISHYLSLKS 541 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT+QK++ + A D LT +PNR L + + +D + +++ V+ +D+D +K Sbjct: 542 DITKQKEAERQLRYQAEHDLLTKLPNRPVLLAEMDSAIDDA-RNNHCFSAVLFMDLDNFK 600 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG GD +L + +R+ + + D++ARL G+ F II + + + A + Sbjct: 601 DVNDTLGHLSGDFLLQLVAKRLEQCISITDVIARLGGDEFAIIQRGIKSKHEPSVLAEKV 660 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +I P + + + + SIG + + +L NA++AMY AK G+H + F Sbjct: 661 INAITTPFRVDDHLLHIGISIGITLIPEDGLETGMLLSNADMAMYEAKAISGSHYKFFDH 720 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S + I+ L A+ N+EL L+ P I + IVG EAL++W + G +S + Sbjct: 721 DLQLSIQRKRLIESHLHNAINNNELNLLLQPKIEIHTGHIVGAEALLRWHSTEIGQVSPA 780 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ IAE+ I + ++L + + I W + P I +N+++ L D L + ++ Sbjct: 781 EFIPIAEKSGQIIELGNWVLNQALQLIKDWCQKGYKIP-KIAVNLSAVQLKDVNLVQDIK 839 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++L +E+ M +PE S L ++ + I+L +DDFGT S LSYL Sbjct: 840 KALEHYQVHSEYLELEITETAAMSDPEFSNSQLSAIKAMNITLAMDDFGTGYSSLSYLAS 899 Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P D VK + S ++ A I+ SII + K + T+IA+ + ++ L R+GC Sbjct: 900 LPIDRVKIDRSFVSDIQHSNEARGIIESIIHLGKILNKTVIAEGVEETEQLELLKRLGCH 959 Query: 934 YIQDSHVASPLGFNSILKLL 953 Q ++ P+ + + LL Sbjct: 960 EAQGYLISRPVASSEFIALL 979 >gi|217969788|ref|YP_002355022.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|217507115|gb|ACK54126.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 905 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 138/624 (22%), Positives = 261/624 (41%), Gaps = 20/624 (3%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 I + + R+ + A G + T + +A + + Sbjct: 287 AAGLRAAIAIPLVQDGRMSGCFVLYAGERGFFDEEMTGLITEMAEDVAFALANFEREARR 346 Query: 405 ER-------QSLAVLGSGDIVWDWDIV---RDRVTTTPDIATILGLASGSMHGPIRNWLP 454 +R AV S + + D + I G ++ G +L Sbjct: 347 QRAEEAARLLGRAVEASANGIMITDARQPGNPLIHVNKAFERITGYSAAEALGRNPGFLV 406 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + + V +R + R D W + + P+ +S G + ++G Sbjct: 407 GADP--LQRGLAEVRAAVKAQREA-EVVLRSHRKDGSPFWNELSLAPVRDSAGTVTHFVG 463 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + NDI+E+ E + +D +TG+ NR DR+ + + D +++D+D Sbjct: 464 VINDISERIAYEEALERQNNEDPVTGLANRNLLRDRVGQAIAFARQDGRALVL-LLLDLD 522 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD L + RI + + D +AR+ G+ F ++L + + A Sbjct: 523 NFKRINDSLGHDAGDQALKEIAGRIRDCVDACDTVARIGGDEFVVLLTDLAGAQAASLVA 582 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++I P+ +L REI ++ASIG + + +L+NA+ AMY AK G N Sbjct: 583 GRILRAIGQPLIVLGREIKISASIGASVFPDDDDGFEALLRNADAAMYRAKDAGRNAFHF 642 Query: 695 FRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + ++ + L A+ L Y P+ +V EAL++ Sbjct: 643 YTADMNAEAVRKLEMEGRLRQAIAQDGFVLHYQPVHEAAGARMVAAEALVRMRDENGTIT 702 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 EF+ +AEE MI A+ ++L R+ W D + +N++++ D L Sbjct: 703 PPGEFIPLAEETGMILALGRWVLLAACREARRWLDLGREMQ--VAVNLSARQFNDEGLAA 760 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ ++ +KL +ES+VM + ++ +L L+ + +S+++DDFGT S L+ Sbjct: 761 HIRHCLAAAGLPARLLKLEITESMVMRDVGQAARVLSTLKALDVSVSVDDFGTGHSSLAC 820 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + S + + E AI+R II +A ++ +A+ + + L Sbjct: 821 LRRFPLDQLKIDRSFVQDAAQDEDSAAIVRGIIALAGSLRLQTVAEGVETAEQVGFLRSA 880 Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954 GCD +Q + + PL +++ + L Sbjct: 881 GCDLLQGYYFSRPLEADTLARRLA 904 >gi|218887388|ref|YP_002436709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758342|gb|ACL09241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 936 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 152/699 (21%), Positives = 289/699 (41%), Gaps = 22/699 (3%) Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-TLASIVLYYTYFIIYHGMKGYE 335 H I +++ + Y A+ I L ++ + + Sbjct: 243 YHHVLPVERGGISICTVSVGLALDGYRAEQRAAWWHIGALTAMAVLVALATALLLSRTVT 302 Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV----- 390 R VL + W+ I + I +++ A +L ++ + Sbjct: 303 RTVLRLSGWVR-SIGPGNMGQRIRIDTGDELEGLANAFNGMLDLLEASQRELNEAHRELE 361 Query: 391 LATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + L + + ++ D V P I G+ + SM G Sbjct: 362 RRVRDRTAQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMVG 421 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + L + + R++ D + + G E R D + + + + G Sbjct: 422 RLSPALGMVP---VNGTRSVWDEMLEH--GSWIGETRGPHRDGWQIPQWLSLVSIRDETG 476 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 IL +G+ +DIT+ K+ I A D+LTG+PNR+ + L + ++ + Sbjct: 477 VILNCVGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRGQ-KLA 535 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND A GD +L + RR+ L+ D+L RL G+ F + ++ Sbjct: 536 VVFIDMDGFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVGGISDK 595 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + + ++ A P +VTAS G + + +++ +L A++AMY AK Sbjct: 596 GHLDGIMRRLFETFAEPFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAMYRAKDM 655 Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F + +++ A+ E LVY PI + +EAL++W+ Sbjct: 656 GKNAIAVFCEEQCLEFTRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVEALLRWE 715 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 S F+ +AE I+ I ++E +WR + + + +NI+S+ L Sbjct: 716 RDGAVVAPPSVFIPVAESSNAIREITRLVVEMACVQHAAWRLEGLT--LPVAVNISSRCL 773 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 +E + A ++ P +++ +E+ +M N ER +L LR +G+ ++LDDFGT Sbjct: 774 NSDETISHIAACLNAYDVPPDALEVEITETSLMQNYERGNAMLCTLRDLGVRVSLDDFGT 833 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L YL +P +K + + + E+ + I+ +I+ +A+++ +A+ + Sbjct: 834 GYSSLQYLARMPIHALKIDRTFVQELLEEGGSLEIVETILGLARSLRLATVAEGVETAAQ 893 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 + L MG DY+Q + PL + IL L + LV Sbjct: 894 LSALRGMGVDYLQGYCLGRPLPADDILTLCRRGMRLVPR 932 >gi|160875961|ref|YP_001555277.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195] gi|160861483|gb|ABX50017.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS195] gi|315268156|gb|ADT95009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS678] Length = 1419 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 130/560 (23%), Positives = 257/560 (45%), Gaps = 19/560 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 859 QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 916 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 F T + + + + GR E D M + I + + G++ Y+G+ +D Sbjct: 917 E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 972 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L+ +++ +MV+D+D +K+ Sbjct: 973 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1027 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L + RI LL + RL G+ F I+L ++ A A + Sbjct: 1028 INDSLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKNSDISASAAIANRII 1087 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 + + + ++ + SIG + + + +L+ A++AMYHAK GGN + + Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + +++ + Y P + L +I G+EAL++ +HP G I ++ Sbjct: 1148 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPVHGLIPPND 1207 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ ++ + +++ Sbjct: 1208 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFSG-RVAVNLSSRQFALPDIQQRIES 1266 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T ++L +E V+ PE + +++ +L K+G+SL LDDFGT S LSYL Sbjct: 1267 ILRLTKLPACHLELEITEGTVIKQPETAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1326 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1327 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1386 Query: 935 IQDSHVASPLGFNSILKLLK 954 IQ + + LL+ Sbjct: 1387 IQGYIFSKAIKETEFTLLLQ 1406 Score = 118 bits (297), Expect = 4e-24, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 2/154 (1%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 IV+ I + V + +L + I ER L++ GSGD +WDWDI + + Sbjct: 711 AAIVLFISYLVTKAILRRRETQRQIVLSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWG 770 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 L + IH D++ R L+ + +RV+ D+ + W+ Sbjct: 771 A-LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWI 829 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + R + + + + LR G +I++ K+ E Sbjct: 830 LDRAKIVERDEKDNALRMTGTIKNISQFKQKEEQ 863 >gi|88858053|ref|ZP_01132695.1| hypothetical protein PTD2_11724 [Pseudoalteromonas tunicata D2] gi|88819670|gb|EAR29483.1| hypothetical protein PTD2_11724 [Pseudoalteromonas tunicata D2] Length = 745 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 140/564 (24%), Positives = 268/564 (47%), Gaps = 17/564 (3%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 I S ER +L V D + D + + P G Sbjct: 182 RIKSTEERLNLFAKCVENLSDAIAICDRNFNIIDINPSFLRFFGKQRDHYINKPF----K 237 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 +H ++++ L +F+ +G Q E ++ + + + + I + NS G + ++ + Sbjct: 238 LH-GYKESYIEKLKTFLL-DKGHWQEELKLPNENKELMPIDLSIDVVKNSTGKVTHFVVL 295 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DI+E+KK+ + + +D LTG+PNR F L + ++V D+D Sbjct: 296 YSDISERKKAESELQRLSNRDRLTGLPNRNLFFTNLKKL-----GAQKCHHALLVFDLDN 350 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +KKIND LG +GD +L L R+ +L + D RL G+ F ++++ N+ KI A Sbjct: 351 FKKINDSLGHQLGDMLLCRLANRLIKLTRQQDSFYRLGGDEFALVIVGTNDIHKITSTAK 410 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694 I P ++ E+ +T+S+G + T +LKNA+ AMYHAK +G + Sbjct: 411 EFLHEITQPFHMAGHELVITSSVGVVLFPEDGNTPEILLKNADTAMYHAKQQGNRYLFFN 470 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ R+ I+ + ++ + Y P + E+VG+EAL+++ P G IS Sbjct: 471 DTMNRQAVKRLQIENLMRFGLKEDHFCVYYQPKMNTETNELVGMEALVRFITPNKGLISP 530 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++F+ IAEE I I +L++ D+ W ++ + +N+++K +L + Sbjct: 531 AQFIPIAEETGQIIEIGEVVLDKACADVKRWLNKGLFSG-RVAVNLSAKQFALPDLTARI 589 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ K ++L +E VM +P+ + ++ L GI L +DDFGT S L+YL Sbjct: 590 DAILQKHSLPSYFLELEITEGTVMDDPKEAIAIMKSLSARGIHLAMDDFGTGYSSLAYLK 649 Query: 875 YIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +T+K + + + + +R ++ SI+ +A N++ +++A+ + + L+ + C+ Sbjct: 650 QFPLNTLKVDKAFIDDMSTERGRNMVDSIVTIAHNLDLSVVAEGVEYAEQVHILSELNCE 709 Query: 934 YIQDSHVASPLGFNSILKLLKERF 957 IQ + + PL + L+++ Sbjct: 710 TIQGYYYSKPLSAEHFEQFLEKQQ 733 Score = 85.8 bits (211), Expect = 4e-14, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 8/193 (4%) Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 A ++ + L T+ + Q +LI +L+ F+++ + + + Sbjct: 8 AVLVTLCAQLALNSFPTQSHEVSFAQSVYFIPAMLIAMLLPFSLLT-IYKLIRSQKKLQI 66 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 +R + LGSGD +WDW+IV +T N IH D Sbjct: 67 SEDRLKSSFLGSGDTLWDWNIVTGELTRINDGQF----FEQDKNVTTPPN-RKNIHPQDL 121 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDIT 520 +L + +R + ++ W++ R + + ++ R G DI+ Sbjct: 122 PKVELLLKQHFSGHTAFFEASYRTKDNLGRWRWVLDRGKVIETDPQLKPTRMTGTVKDIS 181 Query: 521 EQKKSLEGILCNA 533 K + E + A Sbjct: 182 RIKSTEERLNLFA 194 >gi|327480416|gb|AEA83726.1| sensory box/GGDEF family protein [Pseudomonas stutzeri DSM 4166] Length = 708 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 152/574 (26%), Positives = 260/574 (45%), Gaps = 10/574 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445 I+ + A + + R + + ++ + P +A I G ++ + Sbjct: 134 IEDITAQRAVLEALEQAELRYRSIFENASEGIFQSTRDGRYLAANPALARIYGYDSASEL 193 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + + +++ R + L +E V D W+ + Sbjct: 194 VADMADIERRLYVQ--PGRREAFCQLMEQHGEVLNFESEVYRRDCTRIWISENAHVVRGP 251 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 NG+ + Y G DI+E+K + + A D LTG+PNR DR+ L +A Sbjct: 252 NGEFICYEGTVQDISERKHYQQQLERQANHDLLTGLPNRILLNDRIEQGLARAARL-GYY 310 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 T++ ID+D +K IND LG GD++L S+ R+ L+ D +AR+ G+ F ++L Sbjct: 311 LTLVFIDLDNFKFINDGLGHVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVLVLGDHY 370 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + I P L RE V AS+G A + + +LK+A++AMY AK Sbjct: 371 RISTVISLLERVLNEIRRPATLAGREFQVGASLGVAMFPDDGEDAQTLLKHADIAMYAAK 430 Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 RG N+ + F R +R+ ++ + A+E E + Y P + IVGLEAL + Sbjct: 431 KRGRNNFQFFTHDLNRIADERLNLEAAMRTALERDEFAVHYQPKVDAQ-RRIVGLEALAR 489 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W H G I F+ +AEE +I + L +L R D W P+ + +N++ Sbjct: 490 WTHADLGVIGPDRFVPVAEESGLIMPLTLAVLRRAFSDARRWNA-GRQVPLLVAVNLSPL 548 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L +++ E + A++ + SP ++L +E+V +G+ R+ +L + G L +DDF Sbjct: 549 LFLGDDVVERVMAMLDEVGLSPLLVELEITETVFLGDGSRAVSILADFKARGFRLAMDDF 608 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L YL P D +K + SL+TG ++ I R+ I + K++ T++A+ + Sbjct: 609 GTGYSALGYLRRFPLDIIKIDRSLVTGLEQEDEVAMIARAAISLGKSLHKTVVAEGVENA 668 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD Q ++ PL I LL Sbjct: 669 AQFEFLRHNGCDEFQGYLLSRPLPATGIDALLAA 702 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 11/140 (7%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 VL + ++ E +A D W + + + G ++ ++ Sbjct: 16 EVLDRSRVLDTLVNNLE--GMAYRCRNDASWT------MIFVSQGSLGLCGYSAAALVDD 67 Query: 449 IR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +W H +DR R +D + GR +R+R A W+I R + + G Sbjct: 68 AEVSWEQITHPDDRARVRRSIDGAIAA-LGRFTVHYRIRTAAGFIKWVIERGVAVPDEQG 126 Query: 508 DILRYIGIANDITEQKKSLE 527 +I+ G DIT Q+ LE Sbjct: 127 EIV-VEGFIEDITAQRAVLE 145 >gi|47568074|ref|ZP_00238779.1| sensory box protein [Bacillus cereus G9241] gi|47555228|gb|EAL13574.1| sensory box protein [Bacillus cereus G9241] Length = 562 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 140/564 (24%), Positives = 254/564 (45%), Gaps = 28/564 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL + + G Sbjct: 301 FFTGELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALARCSTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPDEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951 MGCDY+Q + A PL + K Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKK 561 >gi|228983830|ref|ZP_04144025.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775879|gb|EEM24250.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 568 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 255/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL + + G Sbjct: 301 FFTGELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALARCSTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPDEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 ISVRSILRRTGFPANRLILEITESIGVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + K L Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKKKL 563 >gi|269925324|ref|YP_003321947.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermobaculum terrenum ATCC BAA-798] gi|269788984|gb|ACZ41125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermobaculum terrenum ATCC BAA-798] Length = 718 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 143/576 (24%), Positives = 277/576 (48%), Gaps = 11/576 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + +IQ V T + + + +A + +W+ D + + I GL Sbjct: 144 LILMLIQDVSLTESLRVQLEIEHAKIEIAERVANLGLWERDTSTGQEVWSDQTFKIYGLK 203 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 GS+ L +H +DRD + + +R+ D+ + + + Sbjct: 204 PGSLEPSYEYLLRIVHPDDRDRVDSAYRDSIKALSA-YDVSYRILLPDSSIRVVHSKAQI 262 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + ++ +L G D+TEQK + E +L A D LTG+PNR +L +L ++ Sbjct: 263 VKGADSHLL-LTGTVQDVTEQKVNEESLLRQALHDPLTGLPNRVMLGQQLEKLLA---SN 318 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + V+ +D+D +K +ND LG GD +LV++ RR+ L+ D AR G+ F +++ Sbjct: 319 RSRSIAVLFLDLDNFKAVNDNLGHQAGDSLLVAVARRLSANLRPTDFAARFGGDEFTVVV 378 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + +SI+ P ++ + + SIG A +SS+ ++S +L+ A++A+ Sbjct: 379 TKVKSIDYVVSIAKRIIESISQPFDIAGERVYTSTSIGIALCSSSEDSASSLLRKADIAL 438 Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y +K G F + S+ + ++ +L A++N + + Y PI+ ++ +E Sbjct: 439 YKSKSLGRGTYVIFDQSMEQEASEILELERNLRTAIQNDQFIVHYQPIVDAATGKVEMIE 498 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+ P G +S +F+ IAEE+ +I + +L + + I IN Sbjct: 499 ALLRWNSPN-GILSPDKFIPIAEEVGLINTLGELVLNKACEQTAYLKATTGAKFIT-SIN 556 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++K L +++++ K P ++L +E+ ++ E L ++ +GI + Sbjct: 557 VSAKQLRQPHFTNNLESMLHKYDLQPKDVQLEITENALVEEVECITNALKEIKTLGIRIA 616 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL +P D +K + S + E+ AI+ +II +A +++ IIA+ Sbjct: 617 IDDFGTGYSSLSYLRKLPIDLIKIDQSFVKMLPNDEEHRAIIYTIISLACSLDLEIIAEG 676 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + + L MGC +IQ + ++ P+ SI +L Sbjct: 677 VEEKSQREILLSMGCKFIQGNLISHPVDLESIKLIL 712 Score = 38.8 bits (89), Expect = 4.9, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 18/142 (12%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA-----------VLGSGDIVW 419 ++ VLI+IL+ +L + SD E L + + + Sbjct: 1 MLQNEVLIIILLAVLGTATILGISASKRTRTSDKESSKLVSATALTHLEACLDAANIPML 60 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI-LDSFVGYRRGR 478 D + + ++ ++ G + L IH D++ + + L + + Sbjct: 61 IIDQNLSISYASKSLQNLINFVPKALIG--ASLLELIHREDQETAKELILQQNQAHEVSQ 118 Query: 479 LQYEFRVRAADNQFHWMIIRIR 500 + R RA D W+ +R Sbjct: 119 ADVKLR-RAGDG---WIRVRAY 136 >gi|91779130|ref|YP_554338.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400] gi|91691790|gb|ABE34988.1| Putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains) with PAS/PAC sensor(s) [Burkholderia xenovorans LB400] Length = 1059 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 146/557 (26%), Positives = 264/557 (47%), Gaps = 13/557 (2%) Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 +R L S + + D R VT G + ++ G +L D Sbjct: 501 EQRLELWGKVFEASSEAILILDAQRRLVTANASFYRATGYRADNVTGKEPAFLFGT--QD 558 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 D+ + V R E VR + + + + + ++ YI DIT Sbjct: 559 HDDILPAVIDSVD-RLSVWHGEAHVRRRAGSDYPAWLMVSAVRDRRANLSHYICTLIDIT 617 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++KKS I A D LT +PNR+ F+ RL +L + R V+ ID+D++K IN Sbjct: 618 DRKKSEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQ-RVAVLFIDLDRFKNIN 676 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-FAIAMRK 639 D LG +GD +L S++RR+ + ++ D ++RL G+ F +IL S +N+ + + Sbjct: 677 DSLGHHIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSNAADVTRTIEERLLP 736 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P + + V+ S+G A + +++NA+ AMY AK G N V+ F Sbjct: 737 LVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFFAPDI 796 Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ ++ L A+ E L Y P + E+V +E L++W+ P+ G +S ++F Sbjct: 797 AERTRYRLTLEACLRSAIAMHEFRLEYQPCVDAHTGELVAVEGLLRWNSPQIGIVSPAQF 856 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+ +I I +++ + I +W D + P+ + IN+++ L D +L + Sbjct: 857 IPVAEDTRLIIPIGAWVINEACQQIAAW-DAEGLTPLRVSINLSAIQLRDPDLIGTLADS 915 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +++ +P R++L +E+V+M N E ++ +R +G+ L+LDDFG S LSYL P Sbjct: 916 LARHGVAPWRLELEITETVLMDNAENYLTMINAIRALGVKLSLDDFGIGYSSLSYLNRFP 975 Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + R AI+R+II + + ++A+ + E + L +GCD + Sbjct: 976 LDRLKIDRAFVLDMLDARADLAIVRAIIELGHELGLRVVAEGVESEHQARILRTIGCDEL 1035 Query: 936 QDSHVASPLGFNSILKL 952 Q + L + Sbjct: 1036 QGFLFSKALSPADLWSW 1052 >gi|299135305|ref|ZP_07028496.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] gi|298590282|gb|EFI50486.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] Length = 830 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 155/632 (24%), Positives = 276/632 (43%), Gaps = 38/632 (6%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 W+ + L L + + V GFT+ +V G I Sbjct: 204 LRWLRLSAGTHLLSFT--NVLAQLAEATGAAANVQIEVEGDGFTLKLNVAPVGDMLSVIL 261 Query: 402 SD------GER-QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGP--IRN 451 +D ER L + +W +D + + G + G + Sbjct: 262 TDITDLKRRERSFRLLFDANPMPMWVFDAQTKNFLNVNDAAIRHYGYDRATFLGMNLLDI 321 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA--ADNQFHWMIIRIR--PMSNSNG 507 W D R S + Q R AD ++ R P +G Sbjct: 322 W-----PEDE---RQAHASVLDEVGDIYQSTHNWRHMKADGSKIEVLTFGRRVPFEGKDG 373 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ A DITE++++ I A DNLTG+PNR F + L L+ S + R Sbjct: 374 ----FLVTAVDITERRRAEARIAYMAHHDNLTGLPNRVKFREHLDQALERSD-GSDERIG 428 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K +ND G VGD +L + R+ ++ ++ARL G+ F +I+ Sbjct: 429 VLCIDLDMFKNVNDSFGHPVGDRLLKMVAERLHAVIPADSLVARLGGDEFAMIVKRNPMP 488 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + D + + ++ P + E+ + AS+G A +T ++L+NA++A+Y AK Sbjct: 489 RDLNDLSAILIADVSAPYAVDGLELVIGASVGIAMSPGDGVTGDDLLRNADMALYRAKSE 548 Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG F R ++ DL A+ N E L Y P++ + IV E+LI+W Sbjct: 549 GGGAHCFFEQEMDRQAQTRRALEFDLRHALANGEFELHYQPLVDVAANRIVAFESLIRWR 608 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G +S +EF+ +AE++ +I + ++L + W I + +N++ Sbjct: 609 HPERGMVSPAEFIPVAEDIGLIVTLGEWVLREACTEAAKWPA-----DIKVAVNLSPIQF 663 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 L + + A ++ + +P+R++L +ES+ + E + +L +LR +G+ +++DDFGT Sbjct: 664 RSRNLVQTVIAALAHSGLAPTRLELEITESLFLAETEANLAMLHQLRSLGVRISMDDFGT 723 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PFD +K + S + E+ AI+++I + +++ + A+ + E Sbjct: 724 GYSSLSYLRSFPFDKIKIDRSFVRDLAEREDCVAIVKAISGLGQSLNISTTAEGVETEDQ 783 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ L MGC +Q ++ I LL Sbjct: 784 LERLRAMGCTEVQGFLFSAAKPGVDIAGLLDR 815 >gi|319763179|ref|YP_004127116.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|330825242|ref|YP_004388545.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|317117740|gb|ADV00229.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|329310614|gb|AEB85029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicycliphilus denitrificans K601] Length = 597 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 139/598 (23%), Positives = 262/598 (43%), Gaps = 42/598 (7%) Query: 387 IQHVLATGYFSQGIFSDGER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-A 441 + H LA + +R Q + +G + + A I GL + Sbjct: 1 MSHPLAALAPGLASSTALQRILREQQALLDSAGVGIAFIRNRT-VLRCNQHCANIFGLAS 59 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRI 499 + G +H + RD FR + + R + + ++R +D + W + Sbjct: 60 PEEVVGRSS---EGLHPS-RDAFRELGRAAFPDLSRGLAYRTKRQLRRSDGRLFWAHLTG 115 Query: 500 RPMSNSNGDILRYIGIANDITEQKKS----------------------LEGILCNAFQDN 537 R + N + + I +DI Q+ + E I A D Sbjct: 116 RLI-NPHDSGEGSLWIIDDIDAQRHARALLDSAMVSRLQREIEDRRSDQERIYRMAHYDA 174 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LT +PNR +R + L+ + VM +D+D +K +ND LG VGD +LV + R Sbjct: 175 LTQLPNRVLLAERGEEAIRLAQEN-GTPLAVMFLDLDNFKHVNDSLGHRVGDALLVEIAR 233 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ ++ D +ARL G+ F ++L N+ A M+++ P+ + E+++ S Sbjct: 234 RLQGTVRERDTVARLGGDEFVLLLPR-ANAQGAERVAAKMQEAAMQPVQVGHHELSLALS 292 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAV 715 +G A + +++ A+ AMY AK G N+ F + + L A+ Sbjct: 293 MGIALFPEHGSDFETLIQCADTAMYRAKAGGRNNYCFFTPQMQEQSARALQLTNALRRAL 352 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E ++L L Y P + L + G+EAL++W+HP+ G++S +EF+ +AE+ +I I ++L Sbjct: 353 ERNQLSLHYQPQVALPTGRVHGVEALLRWNHPELGSVSPAEFIPVAEDSGLILPIGEWVL 412 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + +W P + + +N+++ L +L + ++ L+ + + ++L +E+ Sbjct: 413 RTALAQLQAWHAAGL-PRLTMAVNLSATQLRQPQLPQMVEHLLHEHRIAAHMLELELTEN 471 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894 V + +P + + +L +G+ L++DDFGT S LS L +K + S + Sbjct: 472 VAVDDPHTAIASMEQLHTMGVRLSMDDFGTGYSSLSQLKRFQIYRLKIDQSFVRDLDHDG 531 Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 AI+ +II MA+ + A+ + + L GCD Q + + PL + + Sbjct: 532 NDRAIVSAIIRMAQALGMRTTAEGVETADQLAFLREQGCDEAQGYYFSRPLPAAELER 589 >gi|217958216|ref|YP_002336760.1| sensory box/GGDEF family protein [Bacillus cereus AH187] gi|217064052|gb|ACJ78302.1| sensory box/GGDEF family protein [Bacillus cereus AH187] Length = 567 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 257/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNNHTQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL + + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+V+ + + L LR +GI + LDDFGT S L Sbjct: 418 LSVRSILRRTGFPANRLILEITESIVVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563 >gi|324324668|gb|ADY19928.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 568 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 142/570 (24%), Positives = 257/570 (45%), Gaps = 28/570 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKRE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL + + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 LSVRSILRRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957 MGCDY+Q + A PL + + L F Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKEKLTTDF 567 >gi|313681961|ref|YP_004059699.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313154821|gb|ADR33499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 571 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 143/555 (25%), Positives = 269/555 (48%), Gaps = 13/555 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH-INDRDNF 464 S A+ S + + + TI G + + G + ++ D Sbjct: 22 LSHALQQSANGIIITNSSGVIEYVNQAFVTINGFSESELIGTTPKKMKSGLNSPELYDEM 81 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + + + EF+ R + +W I P+ + N +I YIGI DI ++K Sbjct: 82 WSTI-----TQGYTWKGEFKNRKKNGAIYWCFETISPVFDDNNNITHYIGIIEDIQDRKT 136 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + E I A D LT +PNR F D L + ++ + + ++ ID+D++K +ND LG Sbjct: 137 TEEHIRHLAKFDPLTNLPNRNFFRDELESRINQANSSSQY-FGLLYIDLDRFKMVNDSLG 195 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 VGD +L L R + + + RL G+ F +I ++ + FA + ++I P Sbjct: 196 HTVGDRLLQKLAERFTSINEQNHFIVRLGGDEFAVITALVDSKKTVEMFAKNVHEAIKTP 255 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRS 702 + +I +TASIG A + S ++K A++AMY AK G N F + F S Sbjct: 256 FVIDNNDIYMTASIGIALYPQDGENSELLIKAADMAMYGAKINGKNTYLFFEPTKGDFAS 315 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + ++I+ L A++N+EL+LVY P +++ +GLE L++W P+ G ++ +F+ IAE Sbjct: 316 ETLIIENGLRKALKNNELFLVYQPKWDTKEDQFIGLEVLVRWQSPELGFMNPGQFISIAE 375 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I + ++L+ ++ P I +N++ ++ L ++ ++ +T Sbjct: 376 ETDLIIVLGEWILKEALNSMMELSKTIGFIP-KISVNLSPVQFRNSALNTTIKEILEETR 434 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + +++L +E ++ NP+ + + L +GI+ ++DDFGT S +SYL P T+K Sbjct: 435 FPAEKLELEITEGALVINPKMAIEKMNDLVNLGITFSIDDFGTGYSSMSYLKKFPVSTLK 494 Query: 883 FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + S + AI+ +II +A ++E IA+ + + L +GC IQ Sbjct: 495 IDKSFVDDVVSDHQDRAIIEAIITLAASLEMKTIAEGAETKEQVDILNFIGCYAIQGYWH 554 Query: 941 ASPLGFNSILKLLKE 955 + PL + +++ ++ Sbjct: 555 SRPLDYTALMAYFQK 569 >gi|229131569|ref|ZP_04260454.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] gi|228651887|gb|EEL07839.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] Length = 569 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 259/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S + LA+ S IV D I + G L H Sbjct: 14 SSLQDLKLALDESS-IVAITDRNGLITYVNDKFCEISKYKREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ + + ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTHDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTKKCTGIEALVRCKTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + D + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPD--YQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CD++Q + A PL + + L Sbjct: 540 KSMSCDFVQGFYYAKPLDIGELKEKL 565 >gi|91975244|ref|YP_567903.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91681700|gb|ABE38002.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 905 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 143/605 (23%), Positives = 259/605 (42%), Gaps = 18/605 (2%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 R ++ A +++ +++ + + + D +R + A+ Sbjct: 308 LAAWRKQTRLLISAATISALVVSVILLLIIREIGKQHHATEARLALDKQRLNTAINNMSQ 367 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYR 475 + +D V + GL+ + P ++ I H +F+ +D + Sbjct: 368 GLLLFDAHARLVVCNQRYIQMYGLSP-EVVKPGCSYRDIIAHRQALGSFKGNVDEYCSRS 426 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 + E + I P+ ++ DITE+ + E I A Sbjct: 427 IQSVIVEKTTAIHGLNERSVQISSLPVPGG-----GWVSTHEDITERLRDGEKIAYLAHY 481 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D+LT +PNR F RL L+ + ++ IDID++K IND LG VGD++L + Sbjct: 482 DSLTDLPNRSLFRQRLERKLEGAQR--GASFALLYIDIDEFKSINDTLGHPVGDELLKQV 539 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 R+ + + +ARL G+ F I+ +S + + A + ++I P L ++ Sbjct: 540 AVRLQACVGEDEFVARLGGDEFAIVTNGAGDSDQATEMAERILQAIRTPYQCLGHRLSTD 599 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713 ASIG A +++KNA+LAMY AK G F+ R ++ DL Sbjct: 600 ASIGIAIAPRDGDDIDQLVKNADLAMYGAKAHGRRTFRFFQPEMDAVARARRQLEFDLRS 659 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+ + + Y P++ L +I G EAL++W HP G IS EF+ IAE+ +I I + Sbjct: 660 AIADDAFEIHYQPVVDLRSNKITGCEALLRWRHPTRGMISPGEFIPIAEDTGLINEIGGW 719 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 L + + W D I + +NI+ L + +++ T R++L + Sbjct: 720 TLAAACAEAVQWTD-----DITLAVNISPVQFRQPTLALLVASVLGSTGLPARRLELEVT 774 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892 E+V++ + + + L +LR +G+ ++LDDFGT S LSYL PFD +K + + + Sbjct: 775 EAVLIHDDDAALTTLNQLRALGVRISLDDFGTGYSSLSYLQRFPFDKIKIDRAFVDSIDN 834 Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + AI+ +++ +A + T A+ + L +GC +Q + Sbjct: 835 ADGSTAIIEAVVNIAASRHMTTTAEGVETVRQRDILRALGCTQMQGYLFSPATPAPKFRA 894 Query: 952 LLKER 956 LL + Sbjct: 895 LLTKH 899 >gi|296536005|ref|ZP_06898148.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957] gi|296263671|gb|EFH10153.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957] Length = 720 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 141/589 (23%), Positives = 255/589 (43%), Gaps = 12/589 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIAT 436 VI ++ L ++ R +LA + ++ D V A Sbjct: 136 VIQRRAESLEQALQHSTRAREEMLRDSRAALAQVIDTVPAMISAADRQGRCVFVNAAQAE 195 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G ++ G + R L + E D Q Sbjct: 196 FAGTTPDALAGQPIEQMFGRERAARSRALDAL--VFETGQPLPGREEETEGPDGQARIFS 253 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 P+ N+ G+++ + + +IT++K + + A D LTG+PNR DRL L Sbjct: 254 TTKAPLHNARGEVVAVLTTSLEITDRKLAERRLGHMAHHDALTGLPNRAFLRDRLRRELA 313 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 D+ ++ +D+D++K +ND LG VGD +L ++ +R+ + D++ARL G+ Sbjct: 314 RGRRGDHA-FALLFLDLDRFKAVNDALGHHVGDALLRTVAQRLKATARAEDLVARLGGDE 372 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+ + A A + ++A P++ ++ ASIG E+L+N Sbjct: 373 FAIVQTAIQGPEDAAALAQRIMAALAAPVDADGHSLSAAASIGITLSPRDGADPDELLRN 432 Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LAMY AK G + F + + + + I+ +L A+ E L Y P + L Sbjct: 433 ADLAMYRAKAEGRHGWRFFAAAMDARAREAMRIEAELRAALGRGEFELHYQPQVELRGNR 492 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + G EAL++W G F+ IAEE +I IN ++L R +W + PP+ Sbjct: 493 VTGAEALLRWRRHGHGLCGPGSFLAIAEETGLIVPINEWVLREACRQAAAWAAEGL-PPV 551 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ ++ + ++ T P R+ L +E ++M + L LR + Sbjct: 552 RMGVNLSPVQFRRQDVRALVAQVLDDTGLPPDRLDLELTEGILMEQDAATAAGLQALRAL 611 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912 G+ +++DDFGT S L+Y+ P D +K + S + G T AI+R+I+ + + Sbjct: 612 GVRVSVDDFGTGYSSLNYVKNFPVDRLKIDQSFVRGMTSEPNDAAIVRTIVDLGHMLRLQ 671 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 ++A+ + E + L GCD +Q + + L +LL++ P + Sbjct: 672 VVAEGVETEAQLARLRAEGCDEVQGFYFSEALPAEGFARLLRQ--PGAR 718 >gi|229010055|ref|ZP_04167269.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] gi|228751188|gb|EEM01000.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] Length = 569 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 260/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S + LA+ S IV D I + G L H Sbjct: 14 SSLQDLKLALDESS-IVAITDRNGLITYVNDKFCKISKYKREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ + + ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTNDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTKKCTGIEALVRCKTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + D + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPD--YQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CD++Q + A PL + + L Sbjct: 540 KSMSCDFVQGFYYAKPLDIGELKEKL 565 >gi|328949559|ref|YP_004366894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Marinithermus hydrothermalis DSM 14884] gi|328449883|gb|AEB10784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Marinithermus hydrothermalis DSM 14884] Length = 1053 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 125/564 (22%), Positives = 254/564 (45%), Gaps = 16/564 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + V + + +R V S DI + D +P + +LG + Sbjct: 496 FRDVTRQKRLEEALRRSKQRFRALVQHSSDITYVLDARGQVRYVSPSVQELLGHPPRKLT 555 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G ++ IH DR L+ + + L +EFR R D + W+ +R + + + Sbjct: 556 GRP--FIELIHEADRGEADQALERVLQHPGKLLIHEFRARHGDGTYRWLEVRGKNLL-HD 612 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + + A D+T++K+ + A+ D LT + NR+ +R + + Sbjct: 613 SSVRGIVINARDVTQRKRYEAQVEQLAYYDPLTQLANRRFLQERAQQAITHARRYGE-SL 671 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ +D+D++K++ND LG GD++L + R+ ++ D LARL G+ F ++L E Sbjct: 672 ALLYLDLDRFKQVNDSLGHEAGDELLAQVAARLRRFVRESDTLARLGGDEFVLLLT-EAG 730 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + A + K++ P ++ ++V SIG A + T +++ A+ AMY AK+ Sbjct: 731 QEEASRSAERLVKALRQPFSVRGHTVSVEVSIGIALYPQDGSTFETLMRRADAAMYRAKN 790 Query: 687 RGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 + + ++ +L A++ L L Y P+ + D+ +VG EAL++W Sbjct: 791 EHRGFQFYAPDPAHPPQTPAELEVELRRALQEGGLVLHYQPVRAVEDQRLVGREALLRWW 850 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G + + F+ +A++ + + ++ ++L++ R +W ++ +N+++ L Sbjct: 851 HPQHGELRPAHFLPLAKQAGLGRELDRWVLQQAVRQSSAWPASQ-----WVAVNLSTPSL 905 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D E ++ L+ P R+ L +E + + L L+ +G+ L LDDFG Sbjct: 906 CDPEFPRYLEGLLETHALPPQRLLLEVTEDQALH---EAGDALQALQSLGVRLALDDFGK 962 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 + L L + D +K + + G K ++ R++I +A ++ +A+ + Sbjct: 963 GRAALEGLQGLAVDLLKIDREFIQGLPHHPKDASLSRALITLAHHLGARALAEGVETPAQ 1022 Query: 924 IKELTRMGCDYIQDSHVASPLGFN 947 ++ L GCD +Q P Sbjct: 1023 LEWLRAAGCDLVQGYLTGRPEPLA 1046 Score = 55.0 bits (131), Expect = 7e-05, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 41/143 (28%), Gaps = 8/143 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 S+ R+ A+ D+V D +LG + + Sbjct: 77 LEHAQRSETAREHAALNAVEDLVLHTDRDGRVDYLNAAAEHLLGRS----NARNLTLEAL 132 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + + R + + +L + + W+ + +RP+++ + + Sbjct: 133 LAPQNPALLREAFQHALQGKTVQLS-DLLCQDRYGTPLWLELTLRPLTDRHRAVCGVRVT 191 Query: 516 ANDITEQKKSLEGILCNAFQDNL 538 + T K+ D L Sbjct: 192 GRNTTFHKRVE---TVLRQYDRL 211 >gi|163938551|ref|YP_001643435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] gi|229165570|ref|ZP_04293346.1| Sensory box/GGDEF [Bacillus cereus AH621] gi|163860748|gb|ABY41807.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] gi|228617897|gb|EEK74946.1| Sensory box/GGDEF [Bacillus cereus AH621] Length = 567 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 259/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S + LA+ S IV D I + G L H Sbjct: 12 SSLQDLKLALDESS-IVAITDRNGLITYVNDKFCKISKYKREELIGKDHRILNSGYHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ + + ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTHDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL++ + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTKKCTGIEALVRCKTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + D + + +N++ + L+ Sbjct: 360 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPD--YQEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CD++Q + A PL + + L Sbjct: 538 KSMSCDFVQGFYYAKPLDIGELKEKL 563 >gi|317129698|ref|YP_004095980.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] gi|315474646|gb|ADU31249.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] Length = 607 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 136/582 (23%), Positives = 278/582 (47%), Gaps = 17/582 (2%) Query: 388 QHVLATGYFSQGIFSDGE----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 Q + Q + E R +A+ + IV D + + +L + Sbjct: 32 QEKQPSIESDQALDQQYEQLISRFKIALETTALIVLVNDT-GAITYVSEEFCDLLDYSES 90 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G N+L H + ++ + + + ++ +E + +I P+ Sbjct: 91 ELIGV--NYLSLQHRSFKER--ELFSNTLASQKIT-SFEMIPLKKSGNPLILKTQIMPLI 145 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 SN + ++ + D+T K++ + I D LTG+PNR F + + +++ + Sbjct: 146 KSNQESDIFLIMHRDVTRLKQAEKVIKELGAVDTLTGLPNRDKFERDVRSRIEM-KHAEK 204 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ D+D++K ND LG GD ++ S+++ + + + R G+ F ++ S Sbjct: 205 FPFAILFFDLDRFKFYNDTLGHFTGDKLIQSISQTLSSIQHKKVQIYRYGGDEFSVLFHS 264 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++ + A + + P ++ E+ +TASIG + + +T ++++ AE+AM++ Sbjct: 265 PKSKEEVQELAQEILLAFESPFHVKGNELYITASIGISYFPVIGVTYDQIIQQAEMAMHY 324 Query: 684 AKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + ++ S +++++ L +A+E L YHP I L + +++G+EAL Sbjct: 325 AKELGKGDFQWYQSSIRTEHDEKLLMEKRLRIAMEQENFELYYHPQIDLKENKVIGVEAL 384 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+ + G +S +F+ IAEE +I I ++LE+ W ++ + + I INI+ Sbjct: 385 LRWNDEQLGKVSPYKFIPIAEETGLINQIGDWVLEKACIQAKKWNNEGHE--LRIGINIS 442 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + ++ + KT SP + L +E+ ++ N + L RL++ G+S+++D Sbjct: 443 PQQFQRPDFVSKVKNTLDKTGLSPKLLDLEITENDLLYNRDECLKTLYRLKQFGVSISID 502 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P DT+K + S + AI+ SII +A N++ +IA+ + Sbjct: 503 DFGTGYSSLSYLRRFPIDTLKIDQSFIKEVVDNTNDQAIVTSIIQLAHNMKLRVIAEGVE 562 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + L ++ CD +Q + PL ++ K ++ P +K Sbjct: 563 TSEMVAFLNKLSCDEMQGFLYSQPLPPEAVTKYIESTSPSMK 604 >gi|121594373|ref|YP_986269.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] gi|120606453|gb|ABM42193.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax sp. JS42] Length = 1299 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 140/574 (24%), Positives = 252/574 (43%), Gaps = 11/574 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + Q + E SL + + +WDW++ VT + GLA Sbjct: 701 LHDITERKQTEQRVREREELLSLTIEAAALGLWDWNLPSCEVTGDARWRAMYGLAPVEPG 760 Query: 447 GPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504 +W I D D L + V A W+ + + + Sbjct: 761 ASAAVHWASGITPEDIDVVTQELRRHLQEPHKPFDVTCEVLAPQGDGRWIRSVGKVVAYD 820 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + G R +G++ D++ Q++ + A D LTG+PNR RL ++ S Sbjct: 821 AAGQPARMVGMSIDVSSQRQQERQLERMAHYDALTGLPNRVMLERRLRAGMEHSRARGQ- 879 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V +D+D +K +ND LG A GD +LV + R+ L+ D +ARL G+ F I+L Sbjct: 880 QLGVAYLDLDGFKPVNDRLGHAAGDRLLVVVAERLKRALRLTDSVARLGGDEFVILLSGL 939 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ + + +S+A P L + VTASIG+ + + + +L++A+ AMY A Sbjct: 940 AHAEECERRLHTVMESVAAPYTLDGERVLVTASIGYTLYPDDEADADTLLRHADQAMYAA 999 Query: 685 KHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F + R+ ++ ++ +L LA++ EL L P + + +VG EAL Sbjct: 1000 KQAGRNRFHGFDAAEERARQLRREQCGELLLALQRGELTLFLQPKVDMRLGTVVGAEALA 1059 Query: 743 QWDHPKWGNISSSEFMLIAE-ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 +W HP+ G +S F+ + E + ++++ + I Q + + INI Sbjct: 1060 RWQHPERGLLSPVHFLHLIEGHAELQMRFGEWVVDTALQQIARLMAQGLE--LPVSINIT 1117 Query: 802 SKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L + M +++ + + +ES + + + L RLR +G+ ++ Sbjct: 1118 PEHLHRRGFADWMALRLAQHPAVPARLLAIELTESAALYDIDHVARELTRLRALGMQISF 1177 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL +P D +K + S + G AI++ +I +A + I+A+ + Sbjct: 1178 DDFGTGYSSLAYLRRLPMDHLKLDRSFVAGMLGDAGDRAIVQGVIGLAHSFGCGIVAEGV 1237 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 L +MGC + Q +A P+ + Sbjct: 1238 ETVEQGLALLQMGCHHAQGYCIAMPMPVEQFMDW 1271 Score = 102 bits (255), Expect = 3e-19, Method: Composition-based stats. Identities = 47/333 (14%), Positives = 93/333 (27%), Gaps = 26/333 (7%) Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN 276 + + ++ G ++ L + + + + +L Sbjct: 10 VFLSGIVHLLLIAGATALPQSVLLQ--PSRGVRIALGLVAGAASTLVALQGMPLDAPGVA 67 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 H + + A I L +++ R Sbjct: 68 YIHPPIIVSAAFLFGPLCGGVAAVAALASGWLDAPAHWGAMISLSAACWVMGCLAWLLGR 127 Query: 337 AVLLIPAWILIFIWFIG---------LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 A L +++ + + A+ + + Q +V L G + Sbjct: 128 ATRLTAISLVVALTVLVPPALLPWTETASALAAQEGSAPWQGIPWRYAFGVVALCGAVEL 187 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG---- 443 A Q + + + SG W+WD+ R T GLA+ Sbjct: 188 LRARARSL--QTLGQHEDELLRVLKASGGGRWEWDLRNSRFTYHGRFYRAFGLANSPDDE 245 Query: 444 --------SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + + W H +DR+ L E R+R + + W+ Sbjct: 246 DFTPLRAFDVRESWQRWNARRHPDDRERLGAYLQRVQDGLEESFHAESRMRDDEGHWRWV 305 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLE 527 + R + +S G +LR GI DITE + + Sbjct: 306 VSRGHAVERDSAGRVLRMAGIDLDITEHHEMRD 338 Score = 72.3 bits (176), Expect = 4e-10, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 3/147 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + + A + VW+ + + + I GL G Sbjct: 448 VFVFHDMTQERRVRDELLAANRLLRQAGWMARLGVWEEEPGKGITYWSDVCFDIHGLDPG 507 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + ++ R+ L + +R E + AD + W+ +R P+ Sbjct: 508 TPLPR-DYVQQFVAPVWREAMHAALRDCLR-KRTVWSQEIEIVRADGRLVWVRVRGEPII 565 Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530 + ++R GI DI E +++ + + Sbjct: 566 EGD-RVVRVRGILQDIDEPRRAAQRLR 591 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 7/147 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGLASG 443 ++Q + +Q + S ER + + + + P LG Sbjct: 575 GILQDIDEPRRAAQRLRSSEERLARIFQLLPYPLGFSRREDGTYLDVNPAWEQALGYTRQ 634 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G L R L + YE + ++ + P+ Sbjct: 635 EAVGRTVVELGIYS----APTRAALLEAATAEGQLVGYELELTTRGGDKRTVLQSMSPI- 689 Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530 NG+ G +DITE+K++ + + Sbjct: 690 EVNGEACWLFG-LHDITERKQTEQRVR 715 >gi|251773316|gb|EES53865.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum ferrodiazotrophum] Length = 860 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 150/754 (19%), Positives = 299/754 (39%), Gaps = 30/754 (3%) Query: 226 WVVLGYISIDFGFLSKL--VNLPSGELLIWRACSEIALSSSLIIFL---FMYLHWNRWHA 280 W + Y+ G L ++ + + S + ++ + ++Y Sbjct: 120 WYLGAYVKYLSGLLPEIRNFLADRPDEFLAAWQSLVKVAMFDMSLALDAYIYADIKDIRI 179 Query: 281 KVGYITFSGIACIAILFCMSF---YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 Y + + +S A + + L+ ++ G + Sbjct: 180 LKEYAEKVFSSIPDGILVLSRSLTVLSANRAFLKQFGLSVDAIFGRPLEQVLQASGLKEQ 239 Query: 338 VLLIPAW------ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 +L + +L+ + G R+ ++ A + +++ + Sbjct: 240 ILEVIGTGDMRHDLLLSVGIAGEETQRPMRITLAGMRLAEEEEEEEEEEAMVLVIVEDLT 299 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + R + + D V + G + Sbjct: 300 EEERLRALAEASDRRFRELAETAYSGIVLVDSAMRIVYFNSAAEKMFGCNRTHVLERP-- 357 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L + F L + F D+ M I S +G Sbjct: 358 -LDILLPEAGTLFPDPLKDGESRIWDSVGQRF-----DHTQFPMEISSSVFSEPSG--SF 409 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + D+TE+K +L A D LTG+PNR ++RL + L+ + ++ + Sbjct: 410 VTLVLRDLTERKTFENQLLYLANYDALTGLPNRIHLIERLKQAIPLAERNGQ-HLALLFL 468 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND LG A GD +LV +++R+ ++ D +AR G+ F +L Sbjct: 469 DLDRFKGVNDSLGHASGDLLLVEVSKRLSNCVRKGDTVARFGGDEFVFLLEGLEEREDAK 528 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P + ++ + SIG ++W +S +L+ A+ AMY AK G ++ Sbjct: 529 PIAEKILGALNAPFEIDNVQVFMNGSIGISTWPHDGESSDLLLRRADAAMYRAKELGNSY 588 Query: 692 VESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 +R ++ +L A+E +E L + P I L VG EALI+W HP+ G Sbjct: 589 AFYNPEIGALPERRFSMERELRRALERNEFELFFQPQIDLATGNCVGAEALIRWRHPEKG 648 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 I +F+ +AE +I + +++ + SWR+ M P+ + +N++ K L Sbjct: 649 LILPDQFIPVAESTGLIVPMGAWVIRSACPHLKSWREA-GMAPLRLTVNVSVKQFERGGL 707 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + +++ + ++ +++ +ESV+M +P + L L ++GI +++DDFGT S L Sbjct: 708 IQTLESSMRESGVDSRLLEIEVTESVLMQHP-MASDTLRELSRMGILISIDDFGTGYSSL 766 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL +P +K + S +T +AI +I+ M + IA+ + + L Sbjct: 767 SYLKKLPVYKLKIDRSFVTTLPVDPDMLAITTAIVTMGSALRLKTIAEGVESREQLDILR 826 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 R+GCD IQ + + PL ++ + ++E+ + Sbjct: 827 RLGCDEIQGYYYSRPLPNDTFMTWVREKSTPPRT 860 >gi|167622419|ref|YP_001672713.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis HAW-EB4] gi|167352441|gb|ABZ75054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella halifaxensis HAW-EB4] Length = 1487 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 136/562 (24%), Positives = 272/562 (48%), Gaps = 13/562 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + D + A + + V +D T ++GL S + G + + Sbjct: 924 QRKLKDDVYLLAQAFENTSEAVLIFDSAERVQVTNKAAKNMMGLDSKRLIG--LQFSQVL 981 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 ++ + + + + E + A D+ + + + + N+NGD Y+ + Sbjct: 982 QGGEK---NSSIVNLLDQ-GLSWAGECFINAEDSLRCAVWLNVSSILNTNGDTTHYVVVF 1037 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE+K++ + A D LTG+PNR F +L+ + + D ++ +D+D++ Sbjct: 1038 SDITERKRTEADLRRLANYDVLTGLPNRSLFSSKLSQSVYQAERDGG-NLALLFLDLDRF 1096 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G ++GD +LV + R+ L+ +L R G+ F I+L + + I A Sbjct: 1097 KHVNDSYGHSMGDALLVEASNRLQALISDEHVLCRFGGDEFVILLRNNPDIDVINHLCDA 1156 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + SI +P L RE ++ SIG + W ++KNA+LAMYHAK G + + + Sbjct: 1157 LLASIELPFELYGREFYISTSIGVSLWPEDAKQPESLIKNADLAMYHAKEEGKGNFKYYS 1216 Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753 + ++ +L A+E +EL L + P I + ++++VG+EAL++W+HPK G + Sbjct: 1217 EERNAEALYHLRLEAELRKAIERNELELHFQPQIDILQNDKLVGVEALLRWNHPKEGLVR 1276 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 + F+ +AE +I I+ +++ W P+ + +NI++ + +G Sbjct: 1277 TDIFIKVAEACGLIVEIDRWVMREACIYGARWAALLP-EPLKVSVNISALHFRQPDFIKG 1335 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q + ++T + + +E V+M + ++ + L+ +G+++ +DDFGT S L+YL Sbjct: 1336 VQQVFAETSMPNTALSFEITEGVLMKELKVAKQHIQELKSLGVNVAIDDFGTGYSSLAYL 1395 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + +T+K + S + AI SII +A+N++ ++A+ + ++++ G Sbjct: 1396 RHFEVNTLKIDRSFLIDIATNKADQAIASSIIELARNLKLDVVAEGVETHEQLEQVFSRG 1455 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C IQ + A P+ I + Sbjct: 1456 CYVIQGYYFAKPMPAAEIESYM 1477 Score = 88.5 bits (218), Expect = 5e-15, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 5/150 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + V A + + R A+ GS W+W + + + +IA + + G Sbjct: 789 RQRQVKAFREINLALTDSENRLKQALKGSNSERWEWQLGSN-LFCLENIAGLF--SDGEP 845 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 ++ IH +D + R R + E+R ADN + W+ + RP+ + Sbjct: 846 QVYLKLEQFPIHRDDASEVMAAWQDMLLERTDRFEVEYRYCRADNTWGWVRVMGRPVERN 905 Query: 506 N--GDILRYIGIANDITEQKKSLEGILCNA 533 + G I R GI +DI+EQ+K + + A Sbjct: 906 HLTGVIERVAGIYSDISEQRKLKDDVYLLA 935 >gi|238799082|ref|ZP_04642539.1| Sensory box-containing diguanylate cyclase [Yersinia mollaretii ATCC 43969] gi|238717062|gb|EEQ08921.1| Sensory box-containing diguanylate cyclase [Yersinia mollaretii ATCC 43969] Length = 853 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 138/580 (23%), Positives = 267/580 (46%), Gaps = 17/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ + + + ER + D +W+ D + TI GL Sbjct: 282 LVLRRAMSEAQIADENRTALIASEERFRHVAEAATDWLWETDANLRITYLSQRFLTITGL 341 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTIL-DSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G + L D R L + + R LQ + +A + I Sbjct: 342 SVEHWLGRNLDSLLNC---DIMPLRAWLQHTHLTESRNELQCTY--FSAQGEKRICRIYA 396 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 +P+ N + + + G A+DIT + ++ E I + D LTG+PNR + L + L A Sbjct: 397 KPII-KNDETIGFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLESKLRNLA 455 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + ++ +D+DK+K +ND G GD VL ++ R+ L+ D++AR G+ F + Sbjct: 456 AAPHP-LVILNVDLDKFKPVNDTFGHVAGDMVLHQVSERLRSCLRDQDLVARQGGDEFIL 514 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I+ ++ +I + I P + ++I + ASIG A + + E+L+ A++ Sbjct: 515 IITGLSSIKEIEQLCARVIARIESPYVINGQDIYIGASIGIALAPQDSMQAEELLRFADI 574 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK+ G N + ++ L AV+++E L Y P R+ ++ G Sbjct: 575 AMYEAKNSGRNRWSFYSSEMNDRLMQRSELERFLRQAVKHNEFSLYYQPRYRIEGTQLTG 634 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W+HP G + +F+ +AEE +I +I+ + + + +D +W + + Sbjct: 635 AEALVRWNHPVLGLLMPDQFIALAEETGLITSISDWTMLQACQDASTWHSS-----LIVS 689 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +NI++ + L E ++ ++ T R++L +E +++ + + + + L+ +G+ Sbjct: 690 VNISAIEFRSQRLIERVRQVLLLTGLPSHRLELEITERIMIEDADGAFKTMTALKALGVR 749 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L++DDFGT S L+YL PFD +K + S + + + +I+ II + + T+ A Sbjct: 750 LSMDDFGTGYSSLNYLRRFPFDGLKIDKSFIDELAESHEGQSIVEGIINLGHALSMTVTA 809 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + E + L + CD +Q + P+ + L++ Sbjct: 810 EGVETETQLGYLQTLMCDEVQGYLLGKPMKLYDLSVLIRN 849 >gi|104779686|ref|YP_606184.1| sensory box protein [Pseudomonas entomophila L48] gi|95108673|emb|CAK13367.1| putative sensory box proten ; GGDEF domain/EAL domain protein [Pseudomonas entomophila L48] Length = 1247 Score = 514 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 146/574 (25%), Positives = 266/574 (46%), Gaps = 12/574 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSM 445 + + + + + + + V D + + I G + ++ Sbjct: 664 MLTIARDITERHLMQEKLQLAATVFENTAEGVLITDTDQRISAVNRAFSEITGYSEIEAL 723 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 R H D + + G Q E + + + + + I + NS Sbjct: 724 GQTPRLLASGQH--DSAFYAAMWHQLTAE--GHWQGEIYNKRKNGELYPGWLTISAVRNS 779 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + ++ + DI+ K + + A D LTG+PNR F +RL + L + + + Sbjct: 780 ERETTHFVAVFADISSLKHAQAKLDYQAHHDPLTGLPNRALFENRLLSALTCAQVSNR-Q 838 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K IND LG VGD +L + +R+ E ++ D +ARL G+ F I+L + Sbjct: 839 GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLH 898 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + A + P E E +ASIG + + + +++NA+ AMY +K Sbjct: 899 KPSDASAIANKLLACFHAPFQAGEHEFFTSASIGISLYPQDGSDVATLIRNADAAMYRSK 958 Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G N VE++ + S+R+ ++ +L A+E +EL L Y P L + +VG EALI+ Sbjct: 959 AKGRNRVETYTRDLTAQASERIALEHELRRAIERNELSLYYQPKFSLKTQSLVGAEALIR 1018 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP +G + +F+ +AEE I + ++LE+ R + W+ + IN+A Sbjct: 1019 WTHPTFGEVPPEQFIHLAEENGTILQLGDWVLEQACRQMHVWKKAYQAFG-PLSINLAGA 1077 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L L + ++ L+ ++L +E+ +M E + +L +L+++G+ L +DDF Sbjct: 1078 QLRQPSLAKRIEQLLKSYQLKAGDLQLEITENFIMSQAEEALSVLHQLKQLGVQLAIDDF 1137 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D +K + S + G AI R+II + ++++ TIIA+ + + Sbjct: 1138 GTGYSSLSYLKRLPLDILKIDQSFIRGLPDDPHDAAIARAIIALGRSMQLTIIAEGVENQ 1197 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954 + L GC+ IQ V+ PL L+ Sbjct: 1198 AQQRFLAAEGCEQIQGYIVSLPLPPEEFAATFLR 1231 Score = 80.8 bits (198), Expect = 1e-12, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 57/170 (33%), Gaps = 10/170 (5%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVL-----ATGYFSQGIFSDGERQSLAVLGSGDIV 418 +D++ L G L+L+ IL I L Q + S V I Sbjct: 265 HDMLLYGLPGVLLLVAILAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIA 324 Query: 419 WDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 W+ D +P +LG G W +H D + DS R Sbjct: 325 WEADANDFTYSYVSPHAEDLLGYPLGEWL-QPGFWRSILHPEDALWAQAYCDSETAAGRD 383 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD W+ + + +G G+ DI+E K + + Sbjct: 384 H-SLDYRVIRADGHSLWVRNIVSMI--EHGHKPLMRGLMIDISETKHTED 430 Score = 58.4 bits (140), Expect = 6e-06, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 12/155 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLAS 442 ++ + Q + E+ + A S D + + + G Sbjct: 540 VVAVRDINQLKETQQQLQISEEKFAKAFHASPDGLLLSRQEDGLLLEVNEGFCRLTGYDI 599 Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEF--RVRAADNQFHWMIIRI 499 + L + +N+R L+ R +F +R +D Q + Sbjct: 600 STTVDQTSLDLGIWVDLNERQRLVEQLN------RDGFVRDFSCHIRRSDGQIRLCELSA 653 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 RP+ G + + IA DITE+ E + A Sbjct: 654 RPL--PIGGVDCMLTIARDITERHLMQEKLQLAAT 686 >gi|167624584|ref|YP_001674878.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis HAW-EB4] gi|167354606|gb|ABZ77219.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella halifaxensis HAW-EB4] Length = 1428 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 133/561 (23%), Positives = 268/561 (47%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V ++ L+ G + N+ ++ Sbjct: 865 QAEEQLRLFERAIQNISEGMFILDNNFKFVEVNEACCDLVMLSKKEFIGRLFNF--DLYP 922 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + ++ + + + + GR E + M + I + + G++ Y+G+ +D Sbjct: 923 D---SYSEQIRAILKQQ-GRWNNEVESTRGNGASFLMELSIDAIYDEQGELSHYVGVFSD 978 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ++ +K+ E + D LT +PNR + + L ++ + T+MV+D+D +KK Sbjct: 979 VSRRKQQEEELRKLTNNDLLTNLPNRSNLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1033 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD++LV ++ RI + + RL G+ F I++ + A A + Sbjct: 1034 INDSLGHQVGDELLVQVSERIQVAVPSHTSIYRLGGDEFAILVDKNPDIGTSAIIAKNVI 1093 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + MP L + ++ V SIG + +L+ A++AMYHAK GGN + + S Sbjct: 1094 HAFEMPFELTKEKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1153 Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ ++ + + ++++ + Y P + L + G+EAL++ +HP+ G I ++ Sbjct: 1154 LNKNAIRQLEVENLIREGLKDNLFEVYYQPKVDLKSGRMAGMEALVRLNHPEHGLIPPNK 1213 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L++ WR Q + +N++SK +L + +++ Sbjct: 1214 FIPLAEENGLIVEIGDVVLKKACFAAQKWRSQGLFNG-RVAVNLSSKQFALPDLQQRIES 1272 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE++ ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1273 ILQLTQLPATNLELEITEGTVIKEPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1332 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1333 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEEASQLSILRALKCEE 1392 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + KLL++ Sbjct: 1393 IQGYIFSKAVTETEFTKLLQK 1413 Score = 123 bits (310), Expect = 1e-25, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L + I VI+ +L Q I ER L++ GSGD +WDWDI ++ + + Sbjct: 718 LCSLFISILVIKTILRRREIQQQIAKSEERLKLSLWGSGDEMWDWDIETGQIYRSNIWGS 777 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L + IH D++ R L+ + +RV+ +N++ W++ Sbjct: 778 -LEFPQDGQRSGSQGEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKNNEWVWIL 836 Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 R + + + N + +R G +I+ K++ E + Sbjct: 837 DRAKIVERDENDNAVRMTGTIKNISNFKQAEEQLR 871 >gi|307295045|ref|ZP_07574887.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] gi|306879519|gb|EFN10737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] Length = 868 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 157/677 (23%), Positives = 297/677 (43%), Gaps = 27/677 (3%) Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348 + +L + M+ S+A + + ++ + G R + + Sbjct: 106 WLMLPMVLLSGLSFSLMLGTSLAADSQNVLAAEMAVALMAVSICGDRR-------LLGVS 158 Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF-SDGERQ 407 + L +I D I ++ V++V + A + + + +R Sbjct: 159 YFCGLLIASILHGGDFAQIGLSISCIAVMLVATLRQANADMDRAIAFHQRDLRAQRSDRL 218 Query: 408 SLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-- 464 SG W+ D V + + L L S+ G + DR + Sbjct: 219 LQEYEQSGRGWFWETDRHGCIVYISDTLVRTLDLRGESLIGRPIT--QIVRPGDRQDGDG 276 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 L + R G + R A ++ W I +P+ N G + G D+TE ++ Sbjct: 277 ERTLGFHLSVRTGFSEIAVRAAMAKDE-RWWSISGQPVFNEFGQFQGFRGSGTDLTEMRR 335 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 S + A D+LTG+ NR + L + T+M++D+D++K +ND LG Sbjct: 336 SQAEVTRLAQYDSLTGLANRVQMMRSLEQAVA-GKRGQPRDCTLMMLDLDRFKIVNDTLG 394 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD +L ++ RI ++ ++ R G+ F I+L + + + A A+ ++ P Sbjct: 395 HPAGDALLRQVSERIQRVVGDKGLVGRQGGDEFKILLPGRPDKIMLDHLARAIITDVSQP 454 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702 + + + SIG + +T+ E+++NA+LA+Y AK G + Sbjct: 455 YLVEGTAVVIGVSIGISFCPQDGVTAEELIRNADLALYAAKGGGRGVYRFYSPEMHADAE 514 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 DR ++EDL A+ + L+LVY P++ E+I G EAL++W HP G IS + F+ IAE Sbjct: 515 DRRQLEEDLRKALVENRLHLVYQPVVSSKTEQITGYEALLRWQHPARGAISPTLFIPIAE 574 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I I ++L R+ W + + + +N++ ++ L + ++ + Sbjct: 575 ESGLIGPIGEWVLRTACREAAQWAE-----DVRVAVNVSPIQFANHSLPSIVMNALAASG 629 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 +P R++L +ESV + + + + + RL+ IG+ L LDDFGT S L YL PFD +K Sbjct: 630 LAPHRLELEITESVFLNDDDGTDTMFARLKGIGVRLALDDFGTGYSSLGYLKKAPFDKIK 689 Query: 883 FNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 + S + G+ K AI+++I+ +A+ + A+ + ++ + +GC +IQ Sbjct: 690 IDQSFVRGAAIKGSPNSAIIKAIVSLAEALGMDTTAEGAETQDELALIRNLGCSHIQGFV 749 Query: 940 VASPLGFNSILKLLKER 956 P+ + L+++ Sbjct: 750 YGRPMLPADV--LIQQH 764 >gi|206978155|ref|ZP_03239037.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|222094380|ref|YP_002528439.1| sensory box, ggdef family protein [Bacillus cereus Q1] gi|206743627|gb|EDZ55052.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|221238437|gb|ACM11147.1| sensory box, GGDEF family protein [Bacillus cereus Q1] Length = 567 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 140/566 (24%), Positives = 256/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNNHTQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL + + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 LSVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563 >gi|330939046|gb|EGH42502.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 748 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 155/702 (22%), Positives = 297/702 (42%), Gaps = 60/702 (8%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 A L +S Y +V +IY ++G+ + + Sbjct: 61 AWLRMISSYGDVVLVGQDSPANTMETNSSGSTLIYVAIRGFRHE----------LLGAML 110 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410 L + + + + AL + + + ER L Sbjct: 111 LRNSDQAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164 Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 V+ + D + D+ V P I G + G L Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC--EETSRAT 222 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523 ++ + + R ++ E D W+ + I P++N G ++ + DITE+K Sbjct: 223 LDVIREALSHWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERKE 281 Query: 524 --------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + E + AF D LT + NR ++ LTT ++ Sbjct: 282 SQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEI 341 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 R TV+ +D+D +K +ND +G GD +L ++ R+ ++ D+LAR+ G+ F Sbjct: 342 RDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEF 400 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L+ ++ A + + I + ++I ++ SIG + S E+L++A Sbjct: 401 AILLMGKDQPETAVKMAERIVSQLHTAIQIENQDIFISCSIGIVTAGDSHTKPEELLRDA 460 Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK +G F S D ++I+ L A+E+ + + Y PI E + Sbjct: 461 DVAMYSAKKQGRGRWSIFNTSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGTCEHL 520 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG+EAL++W+H G IS F+ IAE+L +I + +++ + ++ +WR + + + Sbjct: 521 VGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDLR 580 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ K+L + + +I+ T ++++ +ESV + P+ +L ++R++G Sbjct: 581 LNVNVSGKELSHPGFVDQVTRIIATTGLPAGQLQIEVTESVFLYQPDAIAEVLRQIRQLG 640 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913 + + LDDFGT S L Y+ P D VK + S ++ E+ AI+ SI+ + + + I Sbjct: 641 VRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLDI 700 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + L +MGC Y Q + P+ ++L ++K Sbjct: 701 TAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742 >gi|289209031|ref|YP_003461097.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] gi|288944662|gb|ADC72361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] Length = 1092 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 133/557 (23%), Positives = 248/557 (44%), Gaps = 15/557 (2%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466 S+ + + V D ++ ++G + G + + H F Sbjct: 535 SVVFENTREGVVITDATAHILSVNRAFTELMGYTQDEVVGRTPKMFQSGRHDQ---AFYA 591 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + G Q E R + + I + + G + Y+ + DI+ K S Sbjct: 592 NMRRQLETE-GHWQGEIWNRRKTGEIFPELQSITAVRDDQGRLTHYVSVFADISRLKASE 650 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + A D LT +PNR+ RL + L + L +++ID+D++K IND G A Sbjct: 651 AELDFLAHHDPLTELPNRRLLRARLAQAIALMRRRNGL-LAILIIDVDRFKDINDSRGHA 709 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD +L + R+ + D +ARL+ + F ++ + + A A + + + P++ Sbjct: 710 AGDRLLKIVADRLQAGQRGTDTVARLASDEFAVLADNLAHVDDAALVAEDILREVGRPVD 769 Query: 647 L-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703 L E + A+IG A + + +L+ A A+ AK G + + + Sbjct: 770 LGDGVEFEIAATIGIAVFPDHGADAETLLQQAGTALSRAKEDGRGGYRYYSDAFTEAARE 829 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R+ + L A+E L + Y P R+ D ++G EAL++W P+ G +S F+ +AE+ Sbjct: 830 RIDLNARLRRAIEQDSLEVHYQPQYRVSDGVLIGAEALLRWTDPELGPVSPGRFIPVAEQ 889 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I + ++L R+ +WRD P + + +N+++ + + L+ Y Sbjct: 890 TGLIVELGDWVLRRVLAQGQAWRDA-GYPAVRLAVNVSALQFQRVAIDHQVADLLEGHGY 948 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 ++L +ES +M +PER+R +L RLR+ G+S +DDFGT S ++ L P DT+K Sbjct: 949 PAKYLELEITESALMSDPERARRILQRLRERGVSFAVDDFGTGYSSMAQLKRFPVDTLKV 1008 Query: 884 NGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 + S + G +I R+I+ + + +++A+ + + L +GCD+ Q Sbjct: 1009 DKSFVDGLAAGAHDADDRSIARAIVALGHGLGLSVLAEGVETREQLGALRELGCDHYQGY 1068 Query: 939 HVASPLGFNSILKLLKE 955 + PL LL E Sbjct: 1069 LASRPLPAEHFAALLAE 1085 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 5/184 (2%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 L P W LI + ++ + L L+++ Q + Sbjct: 342 LSAPGWDLILKRNVASLAIAPRQQALWMGAATLFVWLIMLAAGGLLWRQQWLRQHLVLMH 401 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIH 457 L + P +A +LG + + +W Sbjct: 402 SHAEQDRLLRLYFDMPFLGMAISYPGGRGWERVNPFLAQMLGYSPEELVRT--DWDRLAV 459 Query: 458 INDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR LD+ + R E R+ D + I ++ ++G I R + Sbjct: 460 PEDRS-CEAPLDAAMQAGERDGYSIEKRLLRRDGRVLVADIDVKCTRTADGAIDRVVATI 518 Query: 517 NDIT 520 DIT Sbjct: 519 EDIT 522 >gi|297539269|ref|YP_003675038.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297258616|gb|ADI30461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 846 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 163/794 (20%), Positives = 311/794 (39%), Gaps = 37/794 (4%) Query: 195 IIGVASLLAIFLTI--FYMVNRSSMLIPTFAMAWVVL---GYISIDFGFLSKLVNLPSGE 249 + + + +F Y V R S LI V + F + + E Sbjct: 51 MFSIMVAMFVFGVTWNSYKVERDSNLIILACGLLSVGLIDFLHLLSFTGMPDFITPSGPE 110 Query: 250 LLIWRAC-SEIALSSSLIIFLFM-YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 I + + + +L+ + + + + +I S + ++ + Sbjct: 111 KTINFWLVARLIAAITLLTVAVNPWQPFQKKSSPYIFIGISLSVTFLTAWLGIYHQDLWP 170 Query: 308 ASIARITLASIVLYYT-----------YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356 + + + + F+ Y + + I + I + Sbjct: 171 RTFVEGSGLTAFKIGSEYIISGLLSIAAFLFYKSTRQEKMPRYDIYSLFGASCVTILSEL 230 Query: 357 AITKRLDNDIIQPALV-----GGLVLIVILIGFTVIQHVLATG-YFSQGIFSDGERQSLA 410 + I L +LI ++ + ++ + F + + Sbjct: 231 SFVNFHSFTDIFQLLGHLYKISAYLLIYRVVFISSVRAPFESLEAFKEKLLVSESMLQSV 290 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILD 469 + V+ D + +GL+ + G L + + Sbjct: 291 IDNVPVRVFWKDRELRFLGANKLFLKDVGLSHINEIVGKKSEDLFT---EYNELYSQDDY 347 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + +L YE + + + W+ P+ +++ ++ + DITE+KK+ + I Sbjct: 348 TVIRTGNSKLNYEVPFKKVNGESGWLQTSKVPLKDTDTCVIGILVTFTDITERKKAEQTI 407 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LT +PNR+ F RL + + + + + ++DID +K++ND LG + GD Sbjct: 408 EFQANYDALTQLPNRRYFNIRLEHEVKSAVLNGK-KFALALLDIDNFKEVNDTLGHSAGD 466 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 ++L + +R+ ++ D ++RL G+ F II+ + ++ A + K+++ P L E Sbjct: 467 ELLKQVAQRLINSVRDIDTVSRLGGDEFTIIISNLKDNNTAEVVAQKLLKALSEPFKLEE 526 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707 +I +T SIG + S +MLKN++ AMY AK +G N F +R+ + Sbjct: 527 NKIFLTVSIGLTIYPDDTNLSEDMLKNSDQAMYQAKLQGRNRHSYFTSDMQVAAQNRLQL 586 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 +L +A+E + LVY PI+ L I EALI+W HPK G IS EF+ IAE +I Sbjct: 587 TNELRVAIEEKQFSLVYQPIVELSTGFIHKAEALIRWQHPKRGAISPIEFIPIAEITGLI 646 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN--ELCEGMQALISKTLYSP 825 I ++ + WR+ I IN + E + + Sbjct: 647 VEIGDWVFYEACNQVKCWRNILAH-NFQISINKSPVQFTHKRQGFKEWF-DFLRELDLPG 704 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 I + +E +V+ + LL + + I ++LDDFGT S L+YL D +K + Sbjct: 705 ESIVIEITEGLVLNADASIKNLLMKYSEANIGISLDDFGTGYSSLTYLKKYDIDYIKIDR 764 Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S ++ + + + + ++I MA + +IA+ I E ++ L GCDY Q + P Sbjct: 765 SFISNISSGSEDLTLCETMIEMAHKLGIKVIAEGIETEEQLELLISAGCDYGQGYWFSKP 824 Query: 944 LGFNSILKLLKERF 957 L +R Sbjct: 825 LAPKEFENYFMKRN 838 >gi|296156558|ref|ZP_06839396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] gi|295893157|gb|EFG72937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] Length = 1059 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 148/557 (26%), Positives = 266/557 (47%), Gaps = 13/557 (2%) Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 +R L S + + D R VT G + ++ G +L +D Sbjct: 501 EQRLELWGKVFEASSEAILILDAQRRLVTANASFYRATGYRADNVTGKEPAFLFGTQEHD 560 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 D ++DS R E VR + + + + + ++ YI DIT Sbjct: 561 -DILPAVIDSV--DRLSVWHGEAHVRRRAGSDYPAWLMVSAVRDRRANLSHYICTLIDIT 617 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++KKS I A D LT +PNR+ F+ RL +L + R V+ ID+D++K IN Sbjct: 618 DRKKSEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQ-RVAVLFIDLDRFKNIN 676 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-FAIAMRK 639 D LG +GD +L S++RR+ + ++ D ++RL G+ F +IL S +N+ + + Sbjct: 677 DSLGHHIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSNAADVTRTIEERLLP 736 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P + + V+ S+G A + +++NA+ AMY AK G N V+ F Sbjct: 737 LVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFFAPDI 796 Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ ++ L A+ E L Y P + E+V +E L++W+ P+ G +S ++F Sbjct: 797 AERTRYRLTLEACLRSAIAMHEFRLEYQPCVDAHTGELVAVEGLLRWNSPQIGIVSPAQF 856 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+ +I I +++ + I +W D M P+ + IN+++ L D +L + Sbjct: 857 IPVAEDTRLIIPIGAWVINEACQQIAAW-DAEGMTPLRVSINLSAIQLRDPDLIGTLADS 915 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +++ +P R++L +E+V+M N E ++ +R +G+ L+LDDFG S LSYL P Sbjct: 916 LARHGVAPWRLELEITETVLMDNAENYLTMINAIRALGVKLSLDDFGIGYSSLSYLNRFP 975 Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + R AI+R+II + + ++A+ + E + L +GCD + Sbjct: 976 LDRLKIDRAFVLDMLDARADLAIVRAIIELGHELGLRVVAEGVESEHQARILRTIGCDEL 1035 Query: 936 QDSHVASPLGFNSILKL 952 Q + L + Sbjct: 1036 QGFLFSKALSPADLWSW 1052 >gi|229137427|ref|ZP_04266038.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] gi|228645985|gb|EEL02208.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] Length = 569 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 257/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNNHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL + + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 362 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+V+ + + L LR +GI + LDDFGT S L Sbjct: 420 LSVRSILRRTGFPANRLILEITESIVVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565 >gi|157962824|ref|YP_001502858.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC 700345] gi|157847824|gb|ABV88323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella pealeana ATCC 700345] Length = 1064 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 149/556 (26%), Positives = 249/556 (44%), Gaps = 13/556 (2%) Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 E LA S + + D + I G + L N+ Sbjct: 452 EESLKLAASVYNNSREAMSVQDDKGLIININAAFTDITGYTESEVKNQNIKILQ-CSRNN 510 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R + + + GR Q E +R + + + + + + ++ R++ + +DIT Sbjct: 511 RSAYEQMHMAVEEE--GRWQGEVWLRRKNGEEFVVWLTLNALFDAEAQTQRHVALFSDIT 568 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ + I A D LTG+PNR+ LD L + S + + +M +D+D +K++N Sbjct: 569 EKKQAEKIIWKQANYDTLTGLPNRRMLLDYLNAEILKSDSREQ-HFALMFLDLDYFKEVN 627 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L +R+ ++ D++ARL G+ F I+L + + A + Sbjct: 628 DTLGHDMGDMLLSEAAKRLKACIRDSDVVARLGGDEFTIVLSGVTDIKGVDKVAKHILTR 687 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 IA P NL E ++ASIG + T +LK+A+ AMY AK G N F S Sbjct: 688 IAEPYNLGEETAYISASIGITLYPDDASTIEGLLKHADQAMYAAKDEGRNRFHYFTPSMQ 747 Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R R+ + +DL A+ + E L Y PI+ L + EALI+W HPK G +S EF+ Sbjct: 748 RYAKYRMRLIQDLRSAIADHEFELYYQPIVSLQGGLGLKAEALIRWRHPKRGLVSPIEFI 807 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQAL 817 +AEE +I I ++ ++ AR WRD+ + + I IN + D E L Sbjct: 808 AVAEETGLIIEIGNWVFQQAARQSALWRDRFGIE-VQISINKSPVQFRDEGESINSWVNL 866 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + + I + +E +++ L + R GI ++LDDFGT S L+YL Sbjct: 867 LKTLNLTNNNICIEITEGLLLDGNSAISSKLTQYRDSGIQISLDDFGTGYSSLAYLKKFD 926 Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + +II MA + +IA+ + + K L GCD+ Sbjct: 927 IDFLKIDQSFTRNLDSNSDDFTLCEAIIVMAHKLGMKVIAEGVETDYQRKILANAGCDFG 986 Query: 936 QDSHVASPLGFNSILK 951 Q + P+ + Sbjct: 987 QGYLFSRPVPVEKFEQ 1002 Score = 113 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 1/153 (0%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + T + + + + E+ L + S WDWDI D + A +LG Sbjct: 307 LIITGFLNRTSQKEAEKEKLASQEQLGLVLGSSELGFWDWDIRNDIIERNEHCAALLGCD 366 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 +++ + W IH DR + + + + + E+R+R ++ W++ + Sbjct: 367 IDTLNRQQKLWGDSIHPEDRVRVLRSIKAHLSGETEQHKVEYRIRTLASETLWILDSGKV 426 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 M + +G LR GI DIT++K+ E + A Sbjct: 427 MSRDESGCPLRMCGIHTDITDRKRVEESLKLAA 459 Score = 65.7 bits (159), Expect = 4e-08, Method: Composition-based stats. Identities = 38/340 (11%), Positives = 98/340 (28%), Gaps = 30/340 (8%) Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPS-------GELLIWRACSEIALSSSLIIFLFM--- 271 ++ + + + + + I + I +S L+ + Sbjct: 5 LILSLIQNAALLLAIVLVYDAFPRNHKRSLDLLWRVGIGVLVAIITISVMLMPWQHSNGV 64 Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG- 330 ++ V + F G+ + + Y ++ + + + + Y Sbjct: 65 FIDSRTVILSVCGLFFGGVPTLVAVILSCLY--RLSEGGIAVWSGIGTIVSSGLMGYLWG 122 Query: 331 ---------MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381 ++ E + + +W + + I L I P L + V+L Sbjct: 123 KYRKGDIGDIRISELFAFGLMTHSVALLWGLTMPTEIAINLLKQITVPLLAIFPITTVLL 182 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 ++ + + D + DI + + P + +L Sbjct: 183 --GILLSRRIEIERDQKIKLQDHLLFKSHFHSGNMGIAITDIAHEWIKVNPSLCQMLKYT 240 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + +WL + +D ++ L + R + + + A D + + + Sbjct: 241 EQELL--SLSWLDLMSADDFQLYKHHLLRMLDGRINEFELDLCLIAKDETIVYTHMTVAC 298 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 + I + T QK++ A Q+ L G+ Sbjct: 299 QR-VQSRVELIITGFLNRTSQKEA--EKEKLASQEQL-GL 334 >gi|300696801|ref|YP_003747462.1| signal transduction eal-ggdef domains transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299073525|emb|CBJ53045.1| putative signal transduction eal-ggdef domains transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 1178 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 143/584 (24%), Positives = 260/584 (44%), Gaps = 24/584 (4%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437 + F +Q + + + V + D V P + Sbjct: 604 VALFGTMQDITERRESDEQLRL----LRRVVESVPSGISVADALQPDLPLVYVNPGFERM 659 Query: 438 LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 G + + G +L + RT L ++ R D Sbjct: 660 TGYRAEEVLGRNCRFLHSSEPGQPALNEVRTALRDASE-----IRVLLRNFRKDGHPFLN 714 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ +S G + Y+GI +D+TEQ+ + + +A D LTG+PNR DR+ + Sbjct: 715 NFLLSPVRDSRGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAV 774 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +++A R V +I+ID++K +ND LG +GD+VL + R+ + D +AR G+ Sbjct: 775 EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 833 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +++ + F A PI + E+ VTASIG A + + S +++ Sbjct: 834 VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGTDSETLVR 888 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AE+AMY+AK G N +E F S R+ ++ + A+E+ + L+Y P I Sbjct: 889 HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEHGQFRLLYQPQIDTRTG 948 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I GLEALI+W HP G + + F+ +AEE ++ I ++L A+ +W + Sbjct: 949 RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLSEAAQQRAAWHARGLGED 1008 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + I +N++ + + L + ++L +ES++M ER+ L +R+ Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+YL +P D +K + + + AI +++ +A N+ Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + L CD +Q + + PL +++ LL+ Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1172 Score = 94.2 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 6/165 (3%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 GG + L+ T + +A + + ER + D ++DWDI Sbjct: 333 QGGARDELSLLERTFNEMRMAIQRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392 Query: 432 PDIATILG----LASGSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + +LG L G G + ++H D + F L + + R + RV Sbjct: 393 ASLHRLLGSDALLTPGDEDGVSRTLTFQQFVHPEDMEVFGRGLRAALHSDRTAWHHVCRV 452 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 A + IR +G +R +G DI+++ + Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEAELR 497 Score = 76.5 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 2/141 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + +A + W WD++RD T + + + G+ G Sbjct: 488 QRSAMEAELRASEANLRVAEQIALLGSWRWDVLRDTATWSTGMYVLTGMPPG-PPPSFAQ 546 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R V E + D + W++ R N +++ Sbjct: 547 QAQFFTADSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNGREEVVA 605 Query: 512 YIGIANDITEQKKSLEGILCN 532 G DITE+++S E + Sbjct: 606 LFGTMQDITERRESDEQLRLL 626 >gi|307729172|ref|YP_003906396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia sp. CCGE1003] gi|307583707|gb|ADN57105.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia sp. CCGE1003] Length = 767 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 139/617 (22%), Positives = 270/617 (43%), Gaps = 19/617 (3%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + A+ R L I +G V Q+ +A Q + E L Sbjct: 152 GAVLGAFAVYHREPRRPTAQEET-MLRDIGRSVGLAVHQNAMA-----QRLAHSEEHHRL 205 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTIL 468 V + + + P +L + IR + H N Sbjct: 206 VVDHLIEGIVVQSRAGVVLACNPSAQRMLRTGPQIVGRSIRTVMVRSFHENGSPVAEEER 265 Query: 469 --DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKS 525 + + + L + + + W+ + P+ + DI +++ Sbjct: 266 PTNQVLATGKPMLDVTLALELVNGEVIWVTENVVPILKPGQSKPDSVLISFTDIGPVREA 325 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN---LRPTVMVIDIDKYKKINDV 582 + A +D+LTG+ NR +R+ ++ + + + V+ +D+D +KK+ND Sbjct: 326 QRQLKFLATRDSLTGLYNRAYLTERMHSLFAPGGPNGSGEVVSVAVLFVDLDGFKKVNDT 385 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G GD +L S+ R+ ++ D LAR+ G+ F I++ + + + ++ A + +IA Sbjct: 386 AGHEAGDALLRSVAERLAGCVRHDDTLARVGGDEFVIVVSACDCNDQLVALARRILDAIA 445 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 +P + E E + ASIG + + + +++NA+ AMYHAK RG N+ + F + Sbjct: 446 VPFAVAENEYYLGASIGISRYPEDGQDAPTLMRNADSAMYHAKQRGRNNFQFFTAELNQQ 505 Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + I++ L A+ +EL LVY PI+ +G EAL++W + + GN+S +EF+ + Sbjct: 506 LQRRFVIEQLLRRALAANELSLVYQPIVDSHGGRTIGAEALLRWYNSELGNVSPAEFIPV 565 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE+ +I I ++L WR P + + +N++ + D L E ++ + + Sbjct: 566 AEDAGLIAEIGEWVLAHACEQAAQWRRTLA-PDLIVAVNLSPRQFND-GLVERIRRCLDQ 623 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + P+ ++L +E ++M + + +L L G+ +++DDFGT S LSYL P Sbjct: 624 SGLEPAALELEITERLLMSDSDTVLPMLQALSATGVRISVDDFGTGYSSLSYLKRFPLHN 683 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + G IAI ++++ MA ++ + A+ + L + CD Q Sbjct: 684 LKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETPEQAAFLRSIDCDKQQGY 743 Query: 939 HVASPLGFNSILKLLKE 955 + P+G ++ + L Sbjct: 744 LYSRPVGASAYARALAN 760 >gi|189424661|ref|YP_001951838.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] gi|189420920|gb|ACD95318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter lovleyi SZ] Length = 805 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 155/743 (20%), Positives = 316/743 (42%), Gaps = 15/743 (2%) Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 AM + Y+ + FL+ ++LP + W + + F + L + W Sbjct: 54 AMLAALFCYVLLAELFLAPDIDLPIFHIEQWSLSLKATAIFFAVAFPLVSLPCSVWRNCR 113 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER---AVL 339 I + + + + V + + L + F + G A+ Sbjct: 114 LVIYLQVLLDLLFVTAAIHWSGGVVSWLWPAYLLISLESAFLFEKKREVWGIGMIGAALY 173 Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL-IVILIGFTVIQHVLATGYFSQ 398 + + + M + I+ L+ V + ++ F + Q Sbjct: 174 GVLLAAEQLDFIATVRMPFMEEESPSILFELLMWLWVAGVNTVVSFFGAFLMDKIRSDHQ 233 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + E + + + D+++ + ++G G + Sbjct: 234 KVQQSQEALTGFIATAHDLIFCCRQDGTLLYLNQVGQDMIG--PLEGEGGDISLFNLTDE 291 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + + R +E R+ + + + + + N D + G+ + Sbjct: 292 EGKGLLARQFEKV-TRRIDAGHFEMRLLSPAVGRILDLEVSLSTCCNDVPDQV-IWGVCH 349 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+ + ++ A D LTG+PNR DRL + N R ++ +D+D++K Sbjct: 350 DITERNLAQRELIKLAHHDVLTGLPNRILLHDRLQQARAFAHRM-NSRFALLFLDMDRFK 408 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG AVGDD+L + +R+ + D +AR+ G+ F +++++ + I + Sbjct: 409 IINDTLGHAVGDDLLRMIAQRLKACFRETDTVARIGGDEFVVLMLNVTDRTDICTLNDKL 468 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + +A P + E+ VT S G ++ + M++ A++AMYHAK G N+++ + Sbjct: 469 LQELAQPFMIRGHELFVTTSGGVCTYPDDEDDVEIMMQKADIAMYHAKALGRNNIQFYND 528 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 ++ I + ++ E L Y P + + + IV EAL++W HP+ G ++ + Sbjct: 529 GMDQNSSRRFTIANSMRRGLDRGEFRLYYQPKLDVSSDCIVATEALVRWQHPELGLLAPT 588 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AEE +I + ++L R + WR + M + + +N++ L + L E ++ Sbjct: 589 EFIQLAEESGLIVELGEWVLREACRQNMVWRQE-GMRGLRVAVNLSGYQLQHSRLVETVR 647 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T ++ +ESV+M NP+ + +L + +GI +++DDFGT S L++L Sbjct: 648 KVLDETGMPGELLEFEITESVIMQNPDYAVEVLNEITNLGIHISIDDFGTGYSSLAHLKR 707 Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +T+K + S + AI +II M ++ +IA+ + E + L CD Sbjct: 708 FSVNTLKIDKSFVRDVENNTTDAAIASAIIAMGSSLNLKVIAEGVETEQQMDFLRDNNCD 767 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 +Q ++ PL + LK+L+++ Sbjct: 768 QVQGFLISRPLPADQALKVLRQK 790 >gi|330975799|gb|EGH75865.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 748 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 155/702 (22%), Positives = 297/702 (42%), Gaps = 60/702 (8%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 A L +S Y +V +IY ++G+ + + Sbjct: 61 AWLRMISSYGDVVLVGQDSPANTMETNSSGSTLIYVAIRGFRHE----------LLGAML 110 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410 L + + + + AL + + + ER L Sbjct: 111 LRNSDQAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164 Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 V+ + D + D+ V P I G + G L Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC--EETSRAT 222 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523 ++ + + R ++ E D W+ + I P++N G ++ + DITE+K Sbjct: 223 LDVIREALSHWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERKE 281 Query: 524 --------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + E + AF D LT + NR ++ LTT ++ Sbjct: 282 SQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEI 341 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 R TV+ +D+D +K +ND +G GD +L ++ R+ ++ D+LAR+ G+ F Sbjct: 342 RDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEF 400 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L+ ++ A + + I + ++I ++ SIG + S E+L++A Sbjct: 401 AILLMGKDQPETAVKMAERIVSQLHTAIQIENQDIFISCSIGIVTAGDSHTKPEELLRDA 460 Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK +G F S D ++I+ L A+E+ + + Y PI E + Sbjct: 461 DVAMYSAKKQGRGRWSIFNTSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGTCEHL 520 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG+EAL++W+H G IS F+ IAE+L +I + +++ + ++ +WR + + + Sbjct: 521 VGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDLR 580 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ K+L + + +I+ T ++++ +ESV + P+ +L ++R++G Sbjct: 581 LNVNVSGKELSHPGFVDQVTRIIATTGLPAGQLQIEVTESVFLYQPDAIAEVLRQIRQLG 640 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913 + + LDDFGT S L Y+ P D VK + S ++ E+ AI+ SI+ + + + I Sbjct: 641 VRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLDI 700 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + L +MGC Y Q + P+ ++L ++K Sbjct: 701 TAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742 >gi|218891972|ref|YP_002440839.1| putative sensory box protein [Pseudomonas aeruginosa LESB58] gi|254235109|ref|ZP_04928432.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126167040|gb|EAZ52551.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|218772198|emb|CAW27977.1| putative sensory box protein [Pseudomonas aeruginosa LESB58] Length = 864 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 136/619 (21%), Positives = 259/619 (41%), Gaps = 17/619 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 AW+ L L ++ L+ L +L V + +Q + Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ER + D +W+ D + + G + G + + + Sbjct: 300 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 357 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + L FR + Q + + N G Y G A DIT+ Sbjct: 358 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 413 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + ++ I + D LTG+PNR L +L + V+++D+D++K IND Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD VL ++ R+ + D++ARL G+ F ++ ++ L+I F + I Sbjct: 472 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 531 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 + V ASIG A +L+ A++AMY AK G N + + Sbjct: 532 NREVAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + + +L A++N E L Y P ++ I EALI+W+HP+ G I EF+ Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPRRGLIGPDEFIG 651 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++L SW + + + +N++ + ++ ++ + Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 R++L +E+V++ + + + + L+++G+ L +DDFGT S L YL PFD Sbjct: 707 LARLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 ++K + + + + +I+++II + + + A+ + E + L C +Q Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826 Query: 938 SHVASPLGFNSILKLLKER 956 ++ PL + LL+ Sbjct: 827 FLLSRPLDAQRLRDLLERE 845 >gi|229028422|ref|ZP_04184544.1| Sensory box/GGDEF [Bacillus cereus AH1271] gi|228732871|gb|EEL83731.1| Sensory box/GGDEF [Bacillus cereus AH1271] Length = 569 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 256/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQILWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAERRLRVSESRYRELAYHDALTSLPNRLQLITTVNEMIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL + + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALARCSTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + D + + +N++ + L+ Sbjct: 362 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPD--YEEGLRLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 LSVRSILRRTGFPPNRLILEVTESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 QSMGCDYVQGFYYARPLSIGELKEKL 565 >gi|15597268|ref|NP_250762.1| hypothetical protein PA2072 [Pseudomonas aeruginosa PAO1] gi|9948082|gb|AAG05460.1|AE004634_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 864 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 136/619 (21%), Positives = 259/619 (41%), Gaps = 17/619 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 AW+ L L ++ L+ L +L V + +Q + Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ER + D +W+ D + + G + G + + + Sbjct: 300 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 357 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + L FR + Q + + N G Y G A DIT+ Sbjct: 358 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 413 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + ++ I + D LTG+PNR L +L + V+++D+D++K IND Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD VL ++ R+ + D++ARL G+ F ++ ++ L+I F + I Sbjct: 472 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 531 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 + V ASIG A +L+ A++AMY AK G N + + Sbjct: 532 NREVAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + + +L A++N E L Y P ++ I EALI+W+HP+ G I EF+ Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPRRGLIGPDEFIG 651 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++L SW + + + +N++ + ++ ++ + Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 R++L +E+V++ + + + + L+++G+ L +DDFGT S L YL PFD Sbjct: 707 LARLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 ++K + + + + +I+++II + + + A+ + E + L C +Q Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826 Query: 938 SHVASPLGFNSILKLLKER 956 ++ PL + LL+ Sbjct: 827 FLLSRPLDAQRLRDLLERE 845 >gi|300856232|ref|YP_003781216.1| putative signal transduction protein [Clostridium ljungdahlii DSM 13528] gi|300436347|gb|ADK16114.1| predicted signal transduction protein [Clostridium ljungdahlii DSM 13528] Length = 756 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 140/550 (25%), Positives = 257/550 (46%), Gaps = 13/550 (2%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFV 472 + + + D + + + G + G R H D+ + + S Sbjct: 212 AMEGILMTDASGNIIKVNDSFQRVSGYKKDDLIGKNPRILKSGRH--DKTFYLNMWHSLS 269 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G + E + + + + + I + S+G + YI I+ DI++ KK+ + + Sbjct: 270 TN--GYWEGEIWNKKKNGKIYPKWMSITSLKGSDGAVENYISISTDISKIKKTEDKLHSL 327 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A+ D LTGIPNR F +RL L + + ++ +D+D +K IND LG A GD +L Sbjct: 328 AYYDLLTGIPNRTLFYERLERSLIRANDNKKA-VALLFMDLDGFKVINDSLGHAAGDLLL 386 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + RI ++ D ++RL G+ F +IL + ++ + + + I +P ++L+REI Sbjct: 387 KEVAARIKSSIRKSDTVSRLGGDEFTVILENVDSHEYVQAVSEVIIDKILLPYSILDREI 446 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 T+ SIG A + T +++ A+ AMY AK G + ++ +++ + Sbjct: 447 TLGVSIGIALAPYDESTVEGLMRKADAAMYDAKESGKGKYSFSSKEIEKRNQEILEMQIR 506 Query: 713 --LAVENSELYLVYHPI--IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 A+ N E L P + +IVG EALI+W+ + +F+ ++E MI Sbjct: 507 LNAALHNKEFILYLQPQTAFDGNEFKIVGAEALIRWETADGKIFTPDKFIPVSENNRMII 566 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++LE I + + I + IN++SK +N L ++ + + + Sbjct: 567 PIGNWILEEIFKIDRILKSSGIN--IKLSINVSSKQFENNNLVSKIKEIFKENSPQNIDL 624 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 + +ES +M N E++ L +++++GI +++DDFGT S LSYL +P D +K + S + Sbjct: 625 VIEITESFLMQNTEKAIQNLQKIKELGIGISIDDFGTGFSSLSYLTRLPADYLKIDKSFI 684 Query: 889 TGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I SII MAK + +A+ + + I L GCD +Q + + PL + Sbjct: 685 DDIANINHKNITPSIISMAKTLNLKTVAEGVETQEQINRLIDEGCDELQGYYFSKPLIIS 744 Query: 948 SILKLLKERF 957 +K +K+ Sbjct: 745 DFIKYIKQYN 754 >gi|330895802|gb|EGH28091.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 748 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 155/702 (22%), Positives = 297/702 (42%), Gaps = 60/702 (8%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 A L +S Y +V +IY ++G+ + + Sbjct: 61 AWLRMISSYGDVVLVGQDSPANTMETNSSGSTLIYVAIRGFRHE----------LLGAML 110 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410 L + + + + AL + + + ER L Sbjct: 111 LRNSDDAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164 Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 V+ + D + D+ V P I G + G L Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC--EETSRAT 222 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523 ++ + + R ++ E D W+ + I P++N G ++ + DITE+K Sbjct: 223 LDVIREALSHWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERKE 281 Query: 524 --------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + E + AF D LT + NR ++ LTT ++ Sbjct: 282 SQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEI 341 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 R TV+ +D+D +K +ND +G GD +L ++ R+ ++ D+LAR+ G+ F Sbjct: 342 RDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEF 400 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L+ ++ A + + I + ++I ++ SIG + S E+L++A Sbjct: 401 AILLMGKDQPETAVKMAERIVSQLHTAIQIENQDIFISCSIGIVTAGDSHTKPEELLRDA 460 Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK +G F S D ++I+ L A+E+ + + Y PI E + Sbjct: 461 DVAMYSAKKQGRGRWSIFNTSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGNCEHL 520 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG+EAL++W+H G IS F+ IAE+L +I + +++ + ++ +WR + + + Sbjct: 521 VGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDLR 580 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ K+L + + +I+ T ++++ +ESV + P+ +L ++R++G Sbjct: 581 LNVNVSGKELSHPGFVDQVTRIIATTGLPAGQLQIEVTESVFLYQPDAIAEVLRQIRQLG 640 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913 + + LDDFGT S L Y+ P D VK + S ++ E+ AI+ SI+ + + + I Sbjct: 641 VRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLDI 700 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + L +MGC Y Q + P+ ++L ++K Sbjct: 701 TAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742 >gi|34497075|ref|NP_901290.1| hypothetical protein CV_1620 [Chromobacterium violaceum ATCC 12472] gi|34102932|gb|AAQ59296.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 816 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 143/577 (24%), Positives = 253/577 (43%), Gaps = 15/577 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +I V Q + + ER + + GD V D + P + G S Sbjct: 243 LMLITDVTERKRAEQALRDEKERIRITLNSIGDAVIATDANGNITFLNPIAEDMTGWQSR 302 Query: 444 SMHGPIRNWLPYIHI-----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + I F I R + ++ D Q + Sbjct: 303 EALGEP---VEKIMPLRESSQGHAMFNPIRLVLSEQRSVGMAMNCALQRRDGQLLELEDS 359 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 P+ + G + I + +D++E + + A D LT +PNR DR L + Sbjct: 360 ASPILDHAGKLTGAIIVFHDVSEARAMAVKMTHLAHHDALTNLPNRMLLQDRTQQALQQA 419 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 A R + ++DID +K IND +G +VGD +L + RR+ L+ D ++R G+ F Sbjct: 420 A-HSGDRLGLYILDIDHFKVINDSMGHSVGDQLLQRVARRLQAALRPCDTVSRQGGDEFI 478 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I++ + A M K+I+ P L ++ SIG + E+ ++A+ Sbjct: 479 ILVPGLGGIEQAGAMADKMLKAISEPYLLDGNRYDLSGSIGVGIYPDDSKNQEELYRHAD 538 Query: 679 LAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMY AK G N F + R ++ + + E + Y P + +V Sbjct: 539 AAMYRAKQEGRNRYRFFSSEIEEALLTRQALERHIRMGAEQGGFLVYYQPKVDAGGGGVV 598 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 GLEAL++W + K +S S F+ +AEE +I + LF+L + D W D + I Sbjct: 599 GLEALLRWRNDKDEIVSPSHFIPLAEETGLIVPLGLFVLRQACLDGKRWLDAGRR--LRI 656 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++ +++++ C+ ++ ++ +T ++L +E V+ + ER+ +L L+ +G+ Sbjct: 657 AVNVSAVQVMESDFCDAVRRVLKETGLPTELLELEITEGVLAQDVERTMSVLAELKSLGV 716 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914 S+ +DDFGT S LSYL P D +K + S + + R AI+ +I MA+ + ++ Sbjct: 717 SIAIDDFGTGYSSLSYLKLFPLDVLKIDQSFIHDMLDDRHSAAIVAAIASMAQGMGLRLV 776 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 A+ + E +EL R+GC +Q P I + Sbjct: 777 AEGVEREEQARELLRLGCRIMQGFLYGRPEPAAEIDR 813 >gi|39936473|ref|NP_948749.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|39650329|emb|CAE28851.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains [Rhodopseudomonas palustris CGA009] Length = 824 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 141/561 (25%), Positives = 261/561 (46%), Gaps = 19/561 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + E L G+ +W +D + ++ G +R L I Sbjct: 266 SLKKREESFRLLFDGNPMPMWVFDAQSFEFLSVNDAAVAHYGYPRERF---LRMSLREIW 322 Query: 458 INDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R+ + + + R + + +R AD ++ R + +G + + Sbjct: 323 P--REEWIAHGQTLLEMRDSYQSEGNWRHIKADGSEIHVLTFGRRVLF-DGRDGFLVAVV 379 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE++K+ I A D LT +PNR + RL L + VM +D+D + Sbjct: 380 -DITERRKAEAKIAHMAHHDGLTNLPNRALYQQRLEQALAQA-RGSGTMVAVMCVDLDLF 437 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G +GD +L + R+ + + D++ARL G+ F I+L S + + FA Sbjct: 438 KNVNDSFGHPMGDRLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASSFAAR 497 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + ++ P ++ E+ + ASIG A S + +NA++A+Y AK GG F Sbjct: 498 LIEILSAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGGGCHHFFE 557 Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R ++ DL A E L Y P+I L ++ I G E L++W HP+ G IS Sbjct: 558 KEMDRQAQIRRDMELDLRQAFARGEFELHYQPLIDLAEDRIGGFETLLRWRHPERGMISP 617 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 S+F+ +AE++ +I + ++L + + SW + + +N++ L + + Sbjct: 618 SDFIPVAEDIGLIVGLGEWVLRQACLEAASWPS-----DVKVAVNLSPVQFRSRNLVQVV 672 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++++ P R++L +ES+ + + E + L +LR +G+ +++DDFGT S LSYL Sbjct: 673 ISALAQSSLVPHRLELEITESLFLADSEANLATLHQLRSLGVRISMDDFGTGYSSLSYLR 732 Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFD +K + S + T +AI+R+I + ++++ T +A+ + + L GC Sbjct: 733 SFPFDKIKIDRSFVKDLTQRPDCLAIVRAIAGLGRSLDITTLAEGVESVEQLDVLRAEGC 792 Query: 933 DYIQDSHVASPLGFNSILKLL 953 +Q ++ + I LL Sbjct: 793 HEVQGFLFSAARPASEICGLL 813 >gi|302060301|ref|ZP_07251842.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato K40] Length = 711 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 142/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%) Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453 ER L V+ + D + D+ V P I G + G L Sbjct: 117 SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 176 Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D ++ + + R ++ E D W+ + I P++N G + Sbjct: 177 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 232 Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545 + + DITE+K + E + AF D LT + NR Sbjct: 233 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 292 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 ++ L R TV+ +D+D +K +ND +G GD +L + R+ ++ Sbjct: 293 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 351 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D+LAR+ G+ F I+L+ ++ A + + I + ++I ++ SIG + Sbjct: 352 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 411 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723 ++L++A++AMY AK +G F S D ++I+ L A+EN + + Sbjct: 412 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 471 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI E +VG+EAL++WDHP G IS F+ IAE+L +I + +++ + D+ Sbjct: 472 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 531 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 +WR + + +N++ K+L + + +I+ T +++++ +ESV + P+ Sbjct: 532 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPSAQLQIEVTESVFLYQPDA 591 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901 +L ++R +G+ + LDDFGT S L Y+ P D VK + S ++ ++ AI+ S Sbjct: 592 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSQAIVSS 651 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ + + ++ I A+ + L +MGC Y Q + P+ ++ +++ Sbjct: 652 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 705 >gi|192292258|ref|YP_001992863.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] gi|192286007|gb|ACF02388.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] Length = 824 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 141/561 (25%), Positives = 261/561 (46%), Gaps = 19/561 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + E L G+ +W +D + ++ G +R L I Sbjct: 266 SLKKREESFRLLFDGNPMPMWVFDAQSFEFLSVNDAAVAHYGYPRERF---LRMSLREIW 322 Query: 458 INDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R+ + + + R + + +R AD ++ R + +G + + Sbjct: 323 P--REEWIAHGQTLLEMRDSYQSEGNWRHIKADGSEIHVLTFGRRVLF-DGRDGFLVAVV 379 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE++K+ I A D LT +PNR + RL L + VM +D+D + Sbjct: 380 -DITERRKAEAKIAHMAHHDGLTNLPNRALYQQRLEQALAQA-RGSGTMVAVMCVDLDLF 437 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G +GD +L + R+ + + D++ARL G+ F I+L S + + FA Sbjct: 438 KNVNDSFGHPMGDRLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASSFAAR 497 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + ++ P ++ E+ + ASIG A S + +NA++A+Y AK GG F Sbjct: 498 LIEILSAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGGGCHHFFE 557 Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R ++ DL A E L Y P+I L ++ I G E L++W HP+ G IS Sbjct: 558 KEMDRQAQIRRDMELDLRQAFARGEFELHYQPLIDLAEDRIGGFETLLRWRHPERGMISP 617 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 S+F+ +AE++ +I + ++L + + SW + + +N++ L + + Sbjct: 618 SDFIPVAEDIGLIVGLGEWVLRQACLEAASWPS-----DVKVAVNLSPVQFRSRNLVQVV 672 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++++ P R++L +ES+ + + E + L +LR +G+ +++DDFGT S LSYL Sbjct: 673 ISALAQSSLVPHRLELEITESLFLADSEANLATLHQLRSLGVRISMDDFGTGYSSLSYLR 732 Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFD +K + S + T +AI+R+I + ++++ T +A+ + + L GC Sbjct: 733 SFPFDKIKIDRSFVKDLTQRPDCLAIVRAIAGLGRSLDITTLAEGVESVEQLDVLRAEGC 792 Query: 933 DYIQDSHVASPLGFNSILKLL 953 +Q ++ + I LL Sbjct: 793 HEVQGFLFSAARPASEICGLL 813 >gi|229056403|ref|ZP_04195816.1| Sensory box/GGDEF [Bacillus cereus AH603] gi|228720877|gb|EEL72426.1| Sensory box/GGDEF [Bacillus cereus AH603] Length = 569 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 259/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S + LA+ S IV D I + G L H Sbjct: 14 SSLQDLKLALDESS-IVAITDRNGLITYVNDKFCKISKYKREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ + + ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDGLTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTHDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTKKCTGIEALVRCKTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + D + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPD--YQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CD++Q + A PL + + L Sbjct: 540 KSMSCDFVQGFYYAKPLDIGELKEKL 565 >gi|87199456|ref|YP_496713.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Novosphingobium aromaticivorans DSM 12444] gi|87135137|gb|ABD25879.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Novosphingobium aromaticivorans DSM 12444] Length = 896 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 158/677 (23%), Positives = 290/677 (42%), Gaps = 20/677 (2%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343 + G+A +F S + + T ++ ++ R V +I A Sbjct: 112 RLALMGLAVALPMFLFGSAMGFWGESGQVAWFGCLAVVVTTGVLATVVQS-GRLVAVIAA 170 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + I+ + L + + L + H Q + Sbjct: 171 QVGIWSGVTCVASRAGGYFA-----LVLGVAIAIAAYLRQRKIDLHARKKSESDQRAQTR 225 Query: 404 GERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 E +G W+ D + +A ILG + G + L + + Sbjct: 226 AEEILADYEETGQGWFWETDRRGHLAYLSSPVAAILGRRVEELVGRPFSELFNLTEQSGE 285 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 L + R + R D + W I RP ++ + + G D+TE+ Sbjct: 286 G-ERTLAFHLSARSSFSELAVRAATRD-EERWWSITGRPTYDTFNNFAGFRGSGTDLTEK 343 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 ++S E A D+LTG+ NR L IL L+ + V ++D+D++K++ND Sbjct: 344 RRSQEHASRLAHFDSLTGLSNRFRMSQTLEKIL-LAPQVQHRACAVFLLDLDRFKQVNDT 402 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG GD +L + +R+ ++ + RL G+ F +IL + ++ A + +S++ Sbjct: 403 LGHPAGDALLKQVAQRLERVVGKIGRVGRLGGDEFEVILPGKMERGQLGHMAGRIIESLS 462 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700 P ++ + + AS+G A +TS +++NA+LA+Y AK G + Sbjct: 463 QPYSIEGSRVMIGASVGIALAPDDGVTSEALIRNADLALYAAKDGGRGRFHFYAPDLHSD 522 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +R ++EDL AV N L L Y P++R E+I G EAL++W+HP+ G IS + F+ I Sbjct: 523 AEERRQMEEDLRDAVSNGGLELYYQPVVRTATEKITGFEALLRWNHPEHGWISPARFIPI 582 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE+ +I I + L +D+ W + + + +N++ + L + ++ Sbjct: 583 AEDTGLIATIGEWALRTACQDLARWPE-----NVRVAVNVSPLQFANPSLPVVVTNALAT 637 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + R++L +ESV + + E + + L+ IG+ L LDDFGT S L YL PFD Sbjct: 638 AQVAAERLELEITESVFLNDDEGTDQMFKSLKAIGVRLALDDFGTGYSSLGYLRSAPFDK 697 Query: 881 VKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + G+T+ + AI+ SI+ +A+ + A+ + ++ + +GC ++Q Sbjct: 698 IKIDQSFVRGATQPGSRNGAIIASIVSLAEALGMETTAEGVETLDELDLVRMLGCSHVQG 757 Query: 938 SHVASPLGFNSILKLLK 954 PL + L Sbjct: 758 YIYERPLSAMNAAARLS 774 >gi|104780999|ref|YP_607497.1| sensory box-containing diguanylate cyclase [Pseudomonas entomophila L48] gi|95109986|emb|CAK14691.1| putative sensory box-containing diguanylate cyclase [Pseudomonas entomophila L48] Length = 562 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 135/555 (24%), Positives = 255/555 (45%), Gaps = 17/555 (3%) Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464 AV + ++ + D+ +I G + + G L +H F Sbjct: 5 YRAAVDAA--AIFSETDLQGRITYVNQQFCSISGYSREELLGANHRILNSGLHE---PAF 59 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQK 523 + + + R + E RA D +W+ + P+ + + G + +Y+ I D+TE++ Sbjct: 60 FLDMWNALAGGRV-WKGEICNRAKDGSLYWVDSTMVPLVDPHTGQVRKYVSIRFDVTEKR 118 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + L + D LTG+PNR D L L S +++ V ++D+D +K +ND Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAFSRR-EHIPLAVCMLDLDGFKAVNDGY 177 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G A GD +LV + +R+ +L+ D +ARLSG+ F +IL ++ + ++A Sbjct: 178 GHATGDLLLVEVAQRLQGILRGGDAVARLSGDEFVLILRHIEGPRQLHAALQRVLLALAA 237 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + + +T++ASIG + + ++++A+ AMY AK RG N F Sbjct: 238 PYVVRDHVLTLSASIGVTLFPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQELEL 297 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + A+ EL L Y P + + +++G EAL++W HP G + EF+ + Sbjct: 298 KATHQTVAQVRQAMREGELCLYYQPKVNMRSGQVIGFEALLRWMHPSKGPVPPGEFLPLV 357 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I + +++++ + W+ + +NIA++ L + E + L+ + Sbjct: 358 EQTDLIVELGEWVIDQALTQLGQWQRDQRG--WSLSVNIAARQLQRGDFSERLAQLLGRH 415 Query: 822 -LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P+++ L ESV + N R L R +G+ +LDDFGT S LSYL +P T Sbjct: 416 PGVDPAQLDLEIVESVAIDNLARVGHCLDACRALGVRFSLDDFGTGYSSLSYLKRLPAQT 475 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + +A+ ++I +A+ +IA+ + + L +GC+ Q Sbjct: 476 IKIDKSFVRDILQDHDDLALTAAVIGLARAFGREVIAEGVETVEHGRMLMGLGCELAQGY 535 Query: 939 HVASPLGFNSILKLL 953 +A P+ + + + Sbjct: 536 GIARPMPADEVPGWV 550 >gi|207738819|ref|YP_002257212.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] gi|206592187|emb|CAQ59093.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum IPO1609] Length = 1178 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 143/584 (24%), Positives = 260/584 (44%), Gaps = 24/584 (4%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437 + F +Q + + + V + D V P + Sbjct: 604 VALFGTMQDITERRESDEQLRL----LRRVVESVPSGISVADALQPDLPLVYVNPGFERM 659 Query: 438 LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 G + + G +L + RT L ++ R D Sbjct: 660 TGYRAEEVLGRNCRFLHSSEPGQPALNEVRTALRDASE-----IRVLLRNFRKDGHPFLN 714 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ +S G + Y+GI +D+TEQ+ + + +A D LTG+PNR DR+ + Sbjct: 715 NFLLSPVRDSRGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAV 774 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +++A R V +I+ID++K +ND LG +GD+VL + R+ + D +AR G+ Sbjct: 775 EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 833 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +++ + F A PI + E+ VTASIG A + + S +++ Sbjct: 834 VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGTDSETLVR 888 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AE+AMY+AK G N +E F S R+ ++ + A+E+ + L+Y P I Sbjct: 889 HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEHGQFRLLYQPQIDTRTG 948 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I GLEALI+W HP G + + F+ +AEE ++ I ++L A+ +W + Sbjct: 949 RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLSEAAQQRAAWHARGLGED 1008 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + I +N++ + + L + ++L +ES++M ER+ L +R+ Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+YL +P D +K + + + AI +++ +A N+ Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + L CD +Q + + PL +++ LL+ Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1172 Score = 93.1 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 6/165 (3%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 GG + L+ T + +A + + ER + D ++DWDI Sbjct: 333 QGGARDELSLLERTFNEMRMAIQRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392 Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + +LG + + ++H D + F L + + R + RV Sbjct: 393 ASLHRLLGSDALLTSGDEDGVSRTLTFQQFVHPEDMEVFGRGLRAALHSDRNAWHHVCRV 452 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 A + IR +G +R +G DI+++ + Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEADLR 497 Score = 73.8 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 2/141 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + +A + W WD++RD T + + + + G Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSTGMYVLTCMPPG-PPPSFAQ 546 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R V E + D + W++ R N +++ Sbjct: 547 QAQFFTADSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605 Query: 512 YIGIANDITEQKKSLEGILCN 532 G DITE+++S E + Sbjct: 606 LFGTMQDITERRESDEQLRLL 626 >gi|330959085|gb|EGH59345.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 723 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 148/585 (25%), Positives = 265/585 (45%), Gaps = 26/585 (4%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN-- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 146 RAQAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVVGRTAHEI 205 Query: 452 --WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 W R + + + E R + + I + ++ ++ Sbjct: 206 GIWTD-------TQQREFMVDELRQKGRVHHREMSGRDKNGDPLVLDISVDFITLND--T 256 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + A DI + K + I A+ D LTG+PNR +DRL+ L L NLR ++ Sbjct: 257 ACLLMNARDIGQLKNAQAQIHHLAYHDPLTGLPNRALLMDRLSQQLSLLQ-HQNLRGALL 315 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-- 627 +D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + S Sbjct: 316 FLDLDHFKHINDSLGHPVGDSVLNVVAARLEASVRQEDTVARLGGDEFVVLICGLDGSLD 375 Query: 628 ---LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 K+ + +R +A P+ L + VT SIG +T +++LK A++A+Y A Sbjct: 376 EVTHKVRVLSDNLRDLLAEPMFLDGHRLQVTPSIGIVLIPDDGLTPADLLKRADIALYRA 435 Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F S + S R+ ++ DL LA+ +E +L + + +I G EAL+ Sbjct: 436 KDSGRNTAQFFHSSMQQAVSQRLRLENDLRLALARNEFHLHFQAQVDCRTNQITGAEALL 495 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINI 800 +W HP++G + +F+ I EE MI + +L+ + Q + +NI Sbjct: 496 RWQHPEYGLLPPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNI 555 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + ++ E ++ + + + +KL +E +V+ N + + L + LR +G+ + Sbjct: 556 SPRQFRQSDFVERVEHSLKQHQLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAM 615 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 616 DDFGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGV 675 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + L R+GC Q + PL LL+ R P Sbjct: 676 ETPEQLAFLERVGCYNYQGYLFSEPLPGPQFESLLQLRRPAQATA 720 Score = 92.7 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 8/157 (5%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 L + + GER LA+ + WD D+ +R+ + A + G+ + Sbjct: 14 LTHADALRLLKETGERLELALELAQMGTWDLDVTCNRLQASAQAAFLHGMDAQPFDDDAE 73 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + + I +R R + + LQ +R + + + R R + G + Sbjct: 74 QFFGRLPIEERHRMREAYRAAIENCDDYLQLIYRFQLKNGTSRLLESRARIYRDDQGQLS 133 Query: 511 RYIGIANDITEQK-----KSLEGILCNAFQ---DNLT 539 R G DIT+++ ++ E AF D++T Sbjct: 134 RLAGTLMDITQKRAQAALEASEEKFAKAFHSSPDSIT 170 >gi|313111104|ref|ZP_07796933.1| putative sensory box protein [Pseudomonas aeruginosa 39016] gi|310883435|gb|EFQ42029.1| putative sensory box protein [Pseudomonas aeruginosa 39016] Length = 864 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 137/619 (22%), Positives = 258/619 (41%), Gaps = 17/619 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 AW+ L L ++ L+ L +L V + +Q + Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ER + D +W+ D + + G + G + + + Sbjct: 300 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 357 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + L FR + Q + + N G Y G A DIT+ Sbjct: 358 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 413 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + ++ I + D LTG+PNR L +L + V+++D+D++K IND Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD VL ++ R+ + D++ARL G+ F ++ ++ L+I F + I Sbjct: 472 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 531 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 I V ASIG A +L+ A++AMY AK G N + + Sbjct: 532 NREIAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + + +L A++N E L Y P ++ I EALI+W+HP G I EF+ Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPHRGLIGPDEFIG 651 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++L SW + + + +N++ + ++ ++ + Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 R++L +E+V++ + + + + L+++G+ L +DDFGT S L YL PFD Sbjct: 707 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 ++K + + + + +I+++II + + + A+ + E + L C +Q Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826 Query: 938 SHVASPLGFNSILKLLKER 956 ++ PL + + LL Sbjct: 827 FLLSRPLDAHGLRDLLARE 845 >gi|146337630|ref|YP_001202678.1| hypothetical protein BRADO0495 [Bradyrhizobium sp. ORS278] gi|146190436|emb|CAL74435.1| conserved hypothetical protein with PAS, GGDEF and EAL domains; putative membrane protein [Bradyrhizobium sp. ORS278] Length = 1046 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 132/573 (23%), Positives = 247/573 (43%), Gaps = 13/573 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLAS 442 T I+ + Q + + + + D+ R V GL Sbjct: 468 VTTIEDISEQRRLEQERDRNYAFLNEIIDHIPSHIIVKDVRDRRYVLINRSSEQGFGLPR 527 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + + D + G E + ++ R + Sbjct: 528 QDIVGK--TVFDLMPRPSAEKITADDDRALEQPDGLFLGEHAWQTPGLGLRYITSRRITI 585 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + I + D TE++ + E I A D LT +PNR F +R+ ++ Sbjct: 586 EDEAQRPRYLINVMEDTTERRLADEKIAHLAHFDALTELPNRVLFRERIDEEIERVR--H 643 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID+D++K IND LG VGD++L ++ RRI L D++ARL G+ F ++L Sbjct: 644 GTFFALLYIDVDEFKGINDSLGHHVGDELLKTIARRIESCLGPEDMVARLGGDEFAVLLT 703 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + ++ + +I P L +++ ASIG A ++ K+A+LAMY Sbjct: 704 TAADQDEVVVVVTEILDTIRKPYRCLGHQLSTDASIGIALAPRDGTERDQLTKHADLAMY 763 Query: 683 HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G F S R+ +++DL A+ ++ L Y P++ + G EA Sbjct: 764 AAKAGGRRTFRFFEPSMDENARARLQLQQDLRRAIVENQFELHYQPLLGFTQNVMTGCEA 823 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G + +F+ +AE+ +I I +++ + +W I + +N+ Sbjct: 824 LLRWRHPERGMVPPLDFIPLAEDTGLINEIGDWVMRTACAEAANWPA-----DIRVAVNV 878 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L L + A +S P R+++ +E+V++ + + + +L +L +G+ + L Sbjct: 879 SPVQLKSPTLALRIAAALSAAGLPPQRLEIEITEAVLISDDDVALNVLHQLHDMGVRIAL 938 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIY 919 DDFGT S LSYL PFD +K + ++ AI+++++ +A T A+ + Sbjct: 939 DDFGTGYSSLSYLKRFPFDKIKIDRCFVSDLNVGSSSAIVQAVVSIAAASNMTTTAEGVE 998 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 L ++GC +Q ++P + KL Sbjct: 999 TGAQQSALRQLGCTEMQGYLFSAPKPAAELRKL 1031 Score = 43.4 bits (101), Expect = 0.19, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 11/173 (6%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 ++ A++ V+ V+ + Q V + ++ +R A+ + +D Sbjct: 325 LVGAAVLAVFVIAVM-FSLMIRQIVQQNQVARSRLENEKQRVETALDNMTQGLISFDEHA 383 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 V +LGL++ ++ + H + + G ++ R Sbjct: 384 CVVMFNQRFIDLLGLSADAIRPGLHLSEVVAH---CKASGAFVGDVASFCSGVIE---RA 437 Query: 486 RAADNQFHWMIIRIRPMSNSNGDIL---RYIGIANDITEQKKS-LEGILCNAF 534 D N L ++ DI+EQ++ E AF Sbjct: 438 TGRDTSQMIAEGSSGRFFNVIDKPLASGGWVTTIEDISEQRRLEQERDRNYAF 490 >gi|206968481|ref|ZP_03229437.1| sensory box/GGDEF family protein [Bacillus cereus AH1134] gi|206737401|gb|EDZ54548.1| sensory box/GGDEF family protein [Bacillus cereus AH1134] Length = 567 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDREGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + + Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDDMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L + G+EAL++ G Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVVLQPIIDLKTKRYSGIEALVRCMTED-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS +EF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 360 ISPNEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 418 FSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563 >gi|218441767|ref|YP_002380096.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424] gi|218174495|gb|ACK73228.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424] Length = 684 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 133/555 (23%), Positives = 259/555 (46%), Gaps = 28/555 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + V S + +++ + H Sbjct: 152 LASLVELSPNPIFEVNFQGKITYLNSLANQKF---------KDLKKKSLHHP-------- 194 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 +L + + + + + + + ++R DIT++K + Sbjct: 195 LLKNLLDQGKPKDEKIVIREVKIGDEVFEQH---LHYLTENKLIR--SYIFDITDRKMAE 249 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + A+ D LT +PNR F ++L+T L + ++ L VM ID+D +K IND LG Sbjct: 250 NSLHYQAYYDTLTDLPNRSLFYEKLSTALAKAYLEETL-IAVMFIDLDGFKNINDTLGHT 308 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 +GD++L S +R+ L+ DILAR G+ F I++ N +I A + + P Sbjct: 309 LGDELLGSFAQRLRHNLRSSDILARWGGDEFTILIPQIKNEEEIEICAKRVFSILQQPFQ 368 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + + + ASIG A + + ++KNA+ A+Y K G NH + + +S S+R Sbjct: 369 VGNHLLYLKASIGVAIYPRDGQDAETIIKNADAALYRTKEMGRNHYQIYHPLITSKTSER 428 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + ++ L A+E + L Y P I + ++ I G+EALI+W+HP G +S ++F+ IAEE Sbjct: 429 LEMENLLHQALEKDQFLLHYQPQINIKNQAICGMEALIRWEHPTLGLVSPAKFIPIAEES 488 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I +I ++L + W+ + PP+ + +N++++ + ++++T Sbjct: 489 GLIISIGEWVLRQACEQNRLWQKKGL-PPVRVAVNLSAQQFQQPNFVNIVTKILAETNLE 547 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P ++L +E+ +M N E S ++ L+ +G+ +++DDFGT S L YL IPF+T+K + Sbjct: 548 PQFLELEITETTIMKNLEFSCQIVHDLKHMGVHISMDDFGTGYSSLGYLKQIPFNTIKID 607 Query: 885 GSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + + +AI+ +++ + + +IA+ + + ++ L ++ C+ +Q + Sbjct: 608 QSFIKDLQDKPQDLAIISAVLAIGRGFNVRVIAEGVETQHQVELLRKLECEEMQGFKFSK 667 Query: 943 PLGFNSILKLLKERF 957 PL + L F Sbjct: 668 PLKPEAAANFLSNHF 682 >gi|253700717|ref|YP_003021906.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M21] gi|251775567|gb|ACT18148.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M21] Length = 953 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 136/568 (23%), Positives = 259/568 (45%), Gaps = 10/568 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + + D R + V S D + D + + G + M G Sbjct: 383 LFKDISERKRLEEDRARLAAIVESSDDAIMAVDREGAITSWNAGAEKMFGYCAQDMKGVH 442 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 ++L + ++ L+ + E ++ + + P+ +++G I Sbjct: 443 LSFL--VSPEKKEQVT-CLNDGIRSDGAVTHCEVVHVTRGGSQIYVSLTMSPIKSADGGI 499 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + IA D+TE+ + E I A D LT +PNR+ F D L L + + V+ Sbjct: 500 VGTSCIARDVTERTRMEEIIKHQAQHDTLTDLPNRKLFGDFLNLELAQARRNRK-SLAVL 558 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +KK+ND LG A GD +L ++ +R+ ++ D +AR+SG+ F +++ + Sbjct: 559 FMDLDHFKKVNDSLGHAAGDRLLQAVAQRLKRCVRESDTVARISGDEFNVLMPDLTQTDD 618 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + + P L E+ VT S+G + + ++ E+L+ A+ AMY AK G Sbjct: 619 VGIVVGKIMGVFRTPFVLEGAELKVTTSVGVSMFPDDGDSAQELLQKADGAMYVAKQTPG 678 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + + ++ L AV EL LVY P++ L EIVG EAL++W HP Sbjct: 679 NSYQFYNGEINARTVARQNMERRLREAVSKDELDLVYQPLLSLESGEIVGAEALLRWHHP 738 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G + ++F+ +AEE I I ++L R + W+ Q + + +N+++++ Sbjct: 739 EHGLLLPAQFLPVAEETGAIVPIGEWVLFNACRQMRLWQSQGFD--LSVAVNLSNREFHQ 796 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + +S++ P+ ++L +E +M NP S + RL IG++ ++DDFG Sbjct: 797 PNFIDLAMRALSQSGLDPASLELDVTEKAIMDNPAFSLRNMRRLTDIGVAFSVDDFGVGA 856 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LS + +P VK + S + + ++ ++I M+ +++ + A + + Sbjct: 857 SSLSRIKELPIAKVKIDRSFIRDILTEPNDLDVVSAVICMSHSLKMRVNAVGVESAEQLA 916 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 + GCD +Q ++ PL + +LL Sbjct: 917 LVGSFGCDEVQGDLISRPLPPHEFERLL 944 Score = 96.6 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 1/130 (0%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + I ++ S A + W+W++ + ++ ILGL S+ + L +H Sbjct: 142 ERIRRREQQLSQAERITHLGSWEWNLESGETVWSDELYRILGLEPESVAATFESLLRMVH 201 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DR+ + +R+ AD + + ++ + + +G IG + Sbjct: 202 PADRETMEKAVQQLRETGSALGIQYYRLLRADGETRIVRGQLESVRDGSGRQT-VIGACH 260 Query: 518 DITEQKKSLE 527 D+TE K + Sbjct: 261 DVTELKWAEA 270 Score = 63.0 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 6/146 (4%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHG 447 V + + + R S + D++ + + +LG + G Sbjct: 261 DVTELKWAEAALRASERRFSKIFQATPDLLSITSLKDGTILEVNEAFLRVLGYQRQEVIG 320 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L +D+ L + R E R++ + + ++ + NG Sbjct: 321 TYAGELGLWADSDQP---AALLQQLEERGEVRDIEVRLKGRNGRELEGLVSAELI-EING 376 Query: 508 DILRYIGIANDITEQKKSLEGILCNA 533 + + + DI+E+K+ E A Sbjct: 377 NP-YLLTLFKDISERKRLEEDRARLA 401 >gi|109897986|ref|YP_661241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] gi|109700267|gb|ABG40187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] Length = 1505 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 137/569 (24%), Positives = 264/569 (46%), Gaps = 19/569 (3%) Query: 400 IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + E+ L ++ D V+ D ++ G + Sbjct: 944 LKEAEEQLKLFKRSIETISDGVFIADTSFRYISVNKAYCKYTGETREQALASYLTFHQ-- 1001 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + F + + + G E R + + + M + I +++ +G I Y+G+ Sbjct: 1002 YP---GAFTEEVKKSLRQK-GNWNGEVESRRINGEKYEMELNIDAINDEDGRISHYVGVF 1057 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT +K + + +L A D LT +PNR F + + ++ +D+D + Sbjct: 1058 SDITPRKSTEKELLKLANTDPLTDLPNRSFF-----QASHNNIVRRGTQHALVCLDMDNF 1112 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 KKIND LG GD ++ + RR+ +L RL G+ F I+L + + + F + Sbjct: 1113 KKINDSLGHQTGDLLIKQIARRLQKLAGKSATCYRLGGDEFSILLDKDTDVHSVTHFTQS 1172 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + +A P + +E + ASIG A + + E+LKNA+ AMY AK+ GGN + F Sbjct: 1173 ILDDLARPFLINHQEFVLGASIGIAFYPEDGSSPQELLKNADTAMYFAKNAGGNKYQFFS 1232 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ ++ I+ + ++ + Y P I + ++V +EAL++++HP+ G +S Sbjct: 1233 GEMNQNAVRQLQIENLIRHGLKEDLFNVYYQPKIDIATGKLVSMEALVRFEHPEKGIVSP 1292 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++F+ ++E+ + I +L + D W + +NI+++ +L E + Sbjct: 1293 AQFIPLSEQTGQVIDIGEVVLRKACEDTKRWVKAGIFTG-RVAVNISARQFELPDLDEKI 1351 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++++ K SP ++ +E +M +P+ + ++ RLR+ GI L LDDFGT S L+YL Sbjct: 1352 ESILQKADLSPLHLECEITEGTLMQDPDNALRMMTRLRERGIHLALDDFGTGYSSLAYLK 1411 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P +T+K + + + + + +II +A N+ ++A+ + E + L R C Sbjct: 1412 RFPLNTLKIDKAFIDDIATSSVDRHMTAAIITIAHNLGLKVVAEGVELEEQMSILRRYEC 1471 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVK 961 + +Q + PL + +LLKE L K Sbjct: 1472 EMLQGYLYSKPLSSSRFERLLKENHQLNK 1500 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 4/174 (2%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 + + + + AL+ +L++ I V Q+ + I ER L + SG Sbjct: 780 LTVNIEPPLWLHRNALIFYCILVLFSILAVVKQYR-SKRVARLAITESEERLKLTLWSSG 838 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 D +WDWDI + +V + I+ + + IH ND + L+ + + Sbjct: 839 DELWDWDIYQGQVFRSNTWG-IMDFPQDDIRVN-SAYQANIHQNDLKRVQDALNEHLQDK 896 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + +R ++ W++ R + + ++N +R G +I+ K++ E Sbjct: 897 TEHFEVTYRASTFKGEWLWVLDRGKVVSRDNNNQPVRMTGTFKNISHLKEAEEQ 950 >gi|291615266|ref|YP_003525423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gi|291585378|gb|ADE13036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 713 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 149/599 (24%), Positives = 257/599 (42%), Gaps = 47/599 (7%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD--------IATILGLASG 443 + + + + S D V +D R+ P ILG Sbjct: 127 ERKRKEEQLIVLEQDTRTLIENSPDTVARYDHECRRIYVNPALASSFPGGAEKILGKKPS 186 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G D F + L +E + + D + IR+ Sbjct: 187 EIPGGPEF----------DKFEAKIVEVFATGNNAL-FELKWQGKDGKELCNHIRLTAER 235 Query: 504 NSNGDILRYIGIANDITEQ-------KKSLEGILC-------NAFQDNLTGIPNRQSFLD 549 +S+G + + I DITE K++ + A D LTG+PNR+ LD Sbjct: 236 DSSGRLTSVLAIGRDITELYESRAALKRANAQLENMNDLLQSQATSDPLTGLPNRRFMLD 295 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 RL L S+ ++ ID+D +K +ND LG VGD +L + R+ ++ D + Sbjct: 296 RLKHALASSSRSGR-EGALLFIDLDNFKTLNDTLGHDVGDQLLQQVAHRLETCVREGDTV 354 Query: 610 ARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 ARL G+ F ++L + + + ++ P L + E T SIG + Sbjct: 355 ARLGGDEFVVMLEDLSEKDLEAAAQTEAVGEKILAALNQPYQLGKHEYRNTPSIGATLFN 414 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722 + + E+LK A++AMY AK G N + F + ++ +L A+E + YL Sbjct: 415 DHQQSLDELLKQADIAMYQAKRAGRNALRFFDPQMQETINSRATLENELRKALELHQFYL 474 Query: 723 VYHPIIR----LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 Y + G EALI+W HP+ G +S ++F+ +AEE +I I L++L+ Sbjct: 475 FYQVQVDSVQEDGSHRATGAEALIRWAHPERGLVSPAQFIPLAEETGLIVPIGLWVLDTA 534 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 + +W+ A + + +N+++K + + A + + P +KL +ES+++ Sbjct: 535 CAQLKTWQHDALTRGLVLAVNVSAKQFRQPDFVAQVDAAVQRHGIDPKLLKLELTESLLL 594 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896 N + + + LR+IGI +LDDFGT S L YL +P D +K + S + Sbjct: 595 ENIQDTIATMNALREIGIRFSLDDFGTGYSSLQYLKQLPLDQLKIDQSFICDLVSDSSDR 654 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 AI+R+II MA+++ +IA+ + E + L GC + Q + P+ N L+ Sbjct: 655 AIVRTIIAMAQSLNLNVIAEGVETEAQRQILLEKGCIHHQGYLFSKPVPINQFEAQLRR 713 Score = 101 bits (253), Expect = 5e-19, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-LGLASGSMHGPIRNWLPYIHINDRDN 463 ER LA+ +G +W+ +++ V+ + + LG ++ + + N+ IH +D Sbjct: 9 ERLELALEAAGLDLWENNLITGEVSRSAAKTFMELGYSNEEITDCLDNYFTLIHSDDVPV 68 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ 522 ++ ++ + + + + EFR+RA + + W + M + + R++G+ +I E+ Sbjct: 69 VQSAINDHLSGSKEQYRCEFRIRAKNGSWVWFANYGKIMDRHGDDRGQRFVGVTFNIDER 128 Query: 523 KKSLEGILCNAFQDNLT 539 K+ E ++ QD T Sbjct: 129 KRKEEQLIVL-EQDTRT 144 >gi|119946750|ref|YP_944430.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Psychromonas ingrahamii 37] gi|119865354|gb|ABM04831.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 608 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 137/577 (23%), Positives = 267/577 (46%), Gaps = 14/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + +H ++ I + R + + S + + D + + I G ++ + Sbjct: 31 LFEHEEKEKLAAELIIAREFRIAAIIFESQEGMLVTDANKHILRVNKAFTRISGYSAEEV 90 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G D+ ++ + DS + E R + + + I + ++ Sbjct: 91 IGQTPKLFSS-GRQDKVFYKAMWDSI--NTTNTWEGEIWNRCKNGDIYLGHMTITAVRDT 147 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 I Y+ DIT K +LE I A+ D +T +PNR +D+L L SA N Sbjct: 148 GNMISNYVATITDITLNKAALEKINNLAYFDQITQLPNRLFLVDKLNLALAESA-HSNHH 206 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 ++ ID+++ K I+ + G +V + +L ++ R+ ++++ D +AR+SG+ F I+L + + Sbjct: 207 GALLFIDLNQLKIIHSIHGYSVRNLLLKQVSTRLTKIVRKADTIARVSGDEFVILLENLS 266 Query: 626 NSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 +I + A + S+ P L + T SIG + ++ S ++LK A++A Sbjct: 267 QQNIEVTTEIQNIAKKIIFSLNQPYQLNMYKYRGTVSIGATIFNGNEFASEKLLKQADIA 326 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 M+ +K G N + F + + +++ L A+E+++ L Y + + +G Sbjct: 327 MHQSKVAGRNRLCFFNQTMQEAITARAEMEQKLREAIEHNQFQLYYQIQVS-SSGQALGA 385 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G IS F+ +AEE +I I ++L + W+ + + + Sbjct: 386 EALIRWQHPEDGQISPFNFIPLAEETGLILPIGEWVLNTACAQLKKWQQNPLTQDLVLAV 445 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++ + + E +++++ K +P R+KL +ES+++ N + LRKIG+ Sbjct: 446 NVSALQIHQEDFVEQLKSILQKHKITPERLKLELTESMLVENVSGIITKINTLRKIGVLF 505 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 +LDDFGT S L YL +P + +K + S + AI+R+II M+ N+ +IA+ Sbjct: 506 SLDDFGTGYSSLQYLKKLPINQLKIDQSFVRDLITDTNDRAIVRTIITMSHNLGLNVIAE 565 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L GC Q + P+ + L+ Sbjct: 566 GVETVEQKQYLLSEGCMNYQGYLFSKPVPIDEFEALI 602 >gi|256829294|ref|YP_003158022.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum DSM 4028] gi|256578470|gb|ACU89606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfomicrobium baculatum DSM 4028] Length = 1075 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 156/563 (27%), Positives = 258/563 (45%), Gaps = 18/563 (3%) Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ LA + + + + P I G ++ G I Sbjct: 513 KAEEKLLLAAKVFENTVEGIVVTNTEGTIEQVNPGFTVITGYSADEAVGSNP----RILK 568 Query: 459 NDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +DR +F + + + G E R D + + + I + N G Y+ I Sbjct: 569 SDRHAQHFYQEMWTKLTQD-GHWAGEIWNRRKDGESYPEWLTISAVKNEAGQTTNYVSIF 627 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE K+ + + A D LTG+PNR DRL L A + ++ D+D + Sbjct: 628 HDITELKRQQDALEYQAQHDALTGMPNRILLGDRLRMALAQLARSGG-KLALLFFDLDNF 686 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG VGD++LV L+RR+ LL+ D LARL G+ F I+L + + A Sbjct: 687 KTINDGLGHGVGDELLVDLSRRLERLLRSGDTLARLGGDEFLILLPEIESVDAASHIATR 746 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 M ++ P + + E VTASIG + +++KNA++AMY AK G N+ + F Sbjct: 747 MLDALKAPFHHGDVEYFVTASIGLTIAPDDGNEAPKLIKNADMAMYRAKSMGRNNYQYFT 806 Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + ++ L A+E E L Y P++ + I+G EALI+W + IS Sbjct: 807 PEMDVAAHRRISMEYKLRKAIEAQEFELFYQPLVHIQSGHILGAEALIRWR-CEGKLISP 865 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +EF+ +AEE +I + ++L A W+D + + + +NI+S+ +L + Sbjct: 866 AEFIPLAEESALILPLGDWVLRTAAHQAKLWQDAGHD--LTMSVNISSRQFSGADLAVTL 923 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ T P R+ +ES++MG+ ++ L LR+ G + LDDFGT S LSYL Sbjct: 924 REVLLDTELRPGRLYFEITESMLMGDVSKAETTLLNLREAGGTFFLDDFGTGYSSLSYLK 983 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + AI+ +I+ MA+ + I+A+ + + L MG Sbjct: 984 RLPIDGLKIDRSFIKDITDDSDSRAIVAAIVSMARTLNLRIVAEGVETQAQRGLLASMGP 1043 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 +Q + P+ LL Sbjct: 1044 IVLQGYLASRPVPAQDFEALLSR 1066 Score = 78.8 bits (193), Expect = 4e-12, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 9/174 (5%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQ------GIFSDGERQSLAVLGSGDIVWD 420 I+ L+ V + + G T + T Q + + + V Sbjct: 351 IRTTLIALGVFLFVGTGITAMLFFFNTRLSRQVQERTAALSASERSFRAFFEMASVGVAQ 410 Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 ++ R + + ++G ++ + + +H +D + S V + + Sbjct: 411 FEGDTRRFIKVNRKFSDLMGYSAAELGT--LSPRDLVHPDDWQASEEAMKSLVTKEQKEI 468 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 E R W + I P+ + Y+ + DIT KK+ E +L A Sbjct: 469 TLEKRYVRKGGGVFWGLATISPLWDQGEHPESYLAVVRDITVAKKAEEKLLLAA 522 >gi|56478889|ref|YP_160478.1| signal transducer protein [Aromatoleum aromaticum EbN1] gi|56314932|emb|CAI09577.1| putative signal transducer protein with histidine kinase domain [Aromatoleum aromaticum EbN1] Length = 920 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 145/586 (24%), Positives = 271/586 (46%), Gaps = 23/586 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV--RDRVTTTPDIATILG 439 +G + Q E+ +LA V I T +I G Sbjct: 338 VGRALAQAQELLHQREADRAQAEEKLALAATALDSAVEGVVIARGGRIATVNRAFTSITG 397 Query: 440 LASGSMHGPIRNWL----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 S + G L H NDR G+ Q E R + + + Sbjct: 398 YRSAEVIGQPLAILLAEAEKTHRNDRRRAMC--------ETGQWQGEVHGRRKNGEMYPA 449 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 I + + +++ + + +DI+ K+ + A D LT +PNR F +RL +L Sbjct: 450 WSSISRAAYGSDEMI-LVCVFSDISAAKQYEARLQHLAHYDALTELPNRLLFRERLADML 508 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + N+ ++ ID+D +K IND LG A GD++L + R+G ++ D ARL G+ Sbjct: 509 VRAERHGNM-LALLFIDLDGFKPINDTLGHAAGDELLRRVAERLGGCVRASDTTARLGGD 567 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI--TVTASIGFASWTSSKITSSEM 673 F ++L + + A + ++ P L + ++ASIG + S + + + Sbjct: 568 EFAVLLDELRSPEEAGIIARNILDTLERPYILAGQPQCQYISASIGIGCYPSDSLDAETL 627 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLM 731 L+ A++AMY AK G N F + L A++ EL LV+ P + Sbjct: 628 LRQADMAMYRAKQEGKNRYRFFAPEINAQASERLFMANSLRAALDRDELRLVFQPCMDFA 687 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 E+ G+EAL++W+HP+ G I S F+ +AEE +I+ I ++L AR + W++ Sbjct: 688 TLEVAGVEALVRWEHPQKGTILPSRFISLAEESGLIEPIGEWVLREAARRVREWKNAGIF 747 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + +N++ + ++L + ++ + +P ++L +E ++M +PER+ ++L L Sbjct: 748 AG-RVAVNLSPRQFRRSDLASRLLVVLDEAGLAPRDLELEVTEGMIMEHPERAVVVLTEL 806 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 G+S+++DDFGT S L+YL P ++K + S ++G ++ R+++ +AK++ Sbjct: 807 VAAGVSISIDDFGTGYSSLAYLKRFPVHSLKIDRSFVSGLPGDRNDRSLTRAVVAVAKSL 866 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +++A+ + + L R+GCD+ Q + + PL ++ L+E Sbjct: 867 GLSVVAEGVEHAGQVDFLRRIGCDFAQGHYFSRPLDPAALGAFLRE 912 >gi|90418289|ref|ZP_01226201.1| putative sensory box/GGDEF family protein [Aurantimonas manganoxydans SI85-9A1] gi|90337961|gb|EAS51612.1| putative sensory box/GGDEF family protein [Aurantimonas manganoxydans SI85-9A1] Length = 792 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 162/731 (22%), Positives = 298/731 (40%), Gaps = 34/731 (4%) Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGI------ACIAILFCMS 300 S LIW + S + + + R V + + + + ++ Sbjct: 71 SPWALIWLLGLSYIVLVS----IRAWSRFQRRAPLVSASSRATAHAVRSAFILGAWWGLA 126 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 ++ ++ +++ + +RA+ I +F+ + Sbjct: 127 ILTFYPSSDGDAKSVIAVIAMGMICGGGFALSALKRALQAFI--IPLFVGSVVALGISQG 184 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGD 416 ND AL+ G IV + + Q + L + G+ D Sbjct: 185 --TNDYFLLALLLGFTFIVYRASCARGELLQENLEGHQKLAEQSSIIELLLREFEEGTSD 242 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 +W V + I G + + + + + + R Sbjct: 243 WIWQTGHDGQLVRGGDRFSQIFGRGTDRLIPNGDQTFAG-----QGLDLSPIAQPMLERT 297 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + + + W+ + +P+ +G Y G+A+DIT + I A D Sbjct: 298 PFRETIIEIPSPQGA-AWIAMTGKPIFGHDGAFTGYRGVASDITATTHAERRIAYLAHHD 356 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +LTG+ NR F + + I S +++ +D+D +K IND G GD +L + Sbjct: 357 SLTGLANRSWFAEEIDRICA-SPPPQGPTSSLLYLDLDNFKLINDRNGHLTGDQLLRQVA 415 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 R+ +++ D++AR+ G+ F I+ S ++ A A+ A P +L V Sbjct: 416 ARLLRIVEPGDMVARIGGDEFAIVAHSAPDTASADSLATAILACFATPFSLGAELANVGC 475 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLA 714 S+G A ++L+NA+LA+Y AK G N F DR ++ DL A Sbjct: 476 SVGIAFPGLDGANPDDLLRNADLALYEAKAAGKNTFCFFESEMAQRLRDRHRLEYDLRCA 535 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 VE +EL L Y PI+ + +G EAL++W+HP G + F+ +AE+ I I ++ Sbjct: 536 VERNELVLNYQPIVDSRTRQTLGFEALVRWEHPLHGRVQPDHFIPLAEQTGAICGIGAWV 595 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 L R+ SW D + + +N++ + ++ ++ + + R++L +E Sbjct: 596 LREACRNAASWGDH-----LTVAVNVSVDQFRHGTIMTDVEDALASSGLAADRLELEITE 650 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894 S+ + +PE +L RLR +G+ + LDDFGT S LSYL PFD +K + S + + Sbjct: 651 SLFIDDPEAVVTVLHRLRSLGVRIALDDFGTGYSSLSYLRKFPFDKLKIDRSFVNAIKDD 710 Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 RIA IL +I+ + + ++ ++ A+ + I LTRM C+ Q + + P+ + Sbjct: 711 RIAHGILETILALGRVLDLSVTAEGVEDAEQIDILTRMTCNQFQGYYFSRPMEAADLGAY 770 Query: 953 LKERFPLVKNT 963 L F T Sbjct: 771 LLRDFCATAET 781 >gi|259909891|ref|YP_002650247.1| sensory box protein [Erwinia pyrifoliae Ep1/96] gi|224965513|emb|CAX57045.1| sensory box protein [Erwinia pyrifoliae Ep1/96] gi|283479976|emb|CAY75892.1| Heme-regulated cyclic AMP phosphodiesterase [Erwinia pyrifoliae DSM 12163] Length = 819 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 142/529 (26%), Positives = 244/529 (46%), Gaps = 14/529 (2%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + + +LG + G L + F L S + GR + E Sbjct: 295 VSGEILLINHRAQRLLGGSQRDFIGKRA--LECMTAAMSAYFMQ-LSSAAQRKGGRQRNE 351 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 ++ + + + + IA+D+T+Q+ + I A DNLT +P Sbjct: 352 RQLTTPSGDRI-ISGSASIVCGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 410 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F LTT L D V+ +D+D +K +ND LG VGD +L S+ R+ + Sbjct: 411 NRVLFNQHLTTAL-REDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSV 469 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L+ D LAR G+ F I+L +S + A + ++I P + +++ SIG Sbjct: 470 LRDRDTLARNGGDEFSIVLPGLTHSEEAEAVARRLIETIRPPFTIDGHNLSIGLSIGITL 529 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720 + + +L+ A++A+Y AK G N E F + R +I+ DL A+ +L Sbjct: 530 AQNGMTSPDYLLRCADMALYAAKRNGRNRFEYFTKAMGDTAQKRRVIENDLREAITYRQL 589 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y PI EI+G EAL++W HP+ G I EF+ IAEE +I ++ + L R Sbjct: 590 KLYYQPITNNQHREIIGYEALMRWHHPEKGIIMPLEFIPIAEETGLIHSLGAYALYEACR 649 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + SW + + +N++ ++ L ++ + ++ +P R+++ +ESV++ N Sbjct: 650 EAASWPGEQ-----TVAVNLSPLQFKNSALIAVVEGALKESGLAPHRLEVEITESVLLDN 704 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898 + +L L+ +G+ + LDDFGT S LSYL PFD +K + S + + R AI Sbjct: 705 TLANIDMLRELKALGVHIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMHDSREALAI 764 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 +R+I M+++++ I A+ + + L GC Q P Sbjct: 765 IRAITGMSRSLDIQITAEGVESNEQFQCLKAEGCTLFQGYFFGRPQPSE 813 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 3/153 (1%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATI 437 L+G+ + + Q + L V D ++ D+ V Sbjct: 108 GKLLGYAKMTRDCSEQQRLQREQQRDQTFRLLVESVNDYAIYMIDLKGLVVNWNAGACRA 167 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G ++ + DR + GR + D + Sbjct: 168 KGYTGNEIIGK--HFSCFYGEQDRRLNLPEKNLQQATLTGRFEDSGWRYRKDGSAFRAHV 225 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 I + N G+++ + I D TE ++ + IL Sbjct: 226 VIDAIRNDGGELIGFAKITRDCTEVREYEQQIL 258 Score = 41.1 bits (95), Expect = 1.0, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 2/102 (1%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 V+ + + + G + G RN+ + D+ +T L V Sbjct: 20 AVYMLTPEGNVASWSRGAQHAKGYLPAEIVG--RNFSCFYSQQDQMQGQTQLGLQVAREA 77 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 GR E D W + I + +G +L Y + D Sbjct: 78 GRFTTEGWRYRKDGSAFWAHVVIDAIYGDDGKLLGYAKMTRD 119 >gi|239978097|ref|ZP_04700621.1| hypothetical protein SalbJ_01580 [Streptomyces albus J1074] gi|291449996|ref|ZP_06589386.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291352945|gb|EFE79847.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 705 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 129/573 (22%), Positives = 247/573 (43%), Gaps = 16/573 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + A ++ + R G+ + + + + + G + Sbjct: 134 AALDARSAVAEALHDSEVRFRAVFQGAAIGIAIASLDGRVLEANDTLVRMFGGLGHPVRR 193 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + W +H +D + + V R + E +D W + + + +++G Sbjct: 194 NLTEW---VHPDDAPHVWNLYGELVRGERESYRVEKPFFRSDGTVLWTNLTVSLLRDADG 250 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + + + D TE++ + A D LTG+PNR F +RL + R + Sbjct: 251 EPQYQLALLEDTTERRLLHLRLRYEATHDALTGLPNRTLFFERLEKAVTR----PEGRFS 306 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENN 626 + +D+D +K +ND LG A GD +LV + R+ +++ARL G+ F + + Sbjct: 307 LCYLDLDGFKTVNDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTDPRD 366 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A + +++ PI++ RE+ V SIG + + +E+L++A++ MY AK Sbjct: 367 EPGHSELAGRILQALEAPISIDGRELLVRGSIGVVDGPTGERGPAEVLRSADITMYRAKS 426 Query: 687 RGGNHVE--SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 GGN E + R + L A+E E ++ Y P++ L D + G EAL++W Sbjct: 427 AGGNRFELADPESDARAITRHALTTALPAALERGEFFIEYQPLVHLGDGSVRGAEALVRW 486 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G + F+ +AE +I + ++LE R W+ + P+ I +N++ Sbjct: 487 AHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEGAVRQARRWQ-GTDNGPVRINVNVSPMQ 545 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L L ++ + P + L +ES ++G + L RL ++G+ + LDDFG Sbjct: 546 LHHPGLVADTVDILEREGLEPGALCLELTESALIGADDDLLKPLRRLAEMGVDIALDDFG 605 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIY 919 T S L+ L +P +K + S G I+ I+ +A +++ ++ + + Sbjct: 606 TGYSNLANLRRLPVSVLKLDRSFTRGMQQYPADPVDRKIVEGIVGLAHSLDLSVTVEGVE 665 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 L +GCD Q A P + + L Sbjct: 666 TGAQADALRELGCDTAQGWFYARPGPPDRLHTL 698 >gi|70733444|ref|YP_263219.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens Pf-5] gi|68347743|gb|AAY95349.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5] Length = 954 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 138/578 (23%), Positives = 257/578 (44%), Gaps = 9/578 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + + + + + + + D + + + G Sbjct: 380 RVLRMAGTRRDISADKELEVQRNLAATVFEAASEGIVILDPDYALIAANQAFSQVTGYQI 439 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 M G L D ++ + G Q E + + + +++ + Sbjct: 440 EDMLGRNVVELSC--SRDARRHYPLIHQALEQY-GSWQGELVETRKNGELYPQWLQLNVV 496 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G + +G D++ +++S E + D LTG+ NR F +RL Sbjct: 497 RDKRGKVRHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLREA-HQRVRQG 555 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ I++D++K +ND LG V D +L + RR+ L D +ARLSG+ F ++ Sbjct: 556 GRSLALLHINLDRFKLLNDSLGHEVADQLLQKMARRLVNALPEADTIARLSGDEFAVLFD 615 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + A + + +PI + E+ V+AS+G + S + ++ A +AM Sbjct: 616 AYGSLSSLTRVATRLLSKLRLPITVEGHELVVSASMGISMLPDSAREIAALISQANMAMA 675 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAKH GGN+ + + S S R+ ++ L A+E +L + Y P + L + EA Sbjct: 676 HAKHLGGNNFQFYTESLQASTLERLQLENQLRKAIEEGQLTVFYQPKLCLASGRLNAAEA 735 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++WDHP G + +F+ +AEE +I I F+L + R W+ Q PI + +N+ Sbjct: 736 LVRWDHPVMGRVPPGDFIGLAEETGLIGPIGEFVLRQACRQACEWQRQGL-EPIRVSVNL 794 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L ++ ++ +T P ++L +ES ++ + E +LR +G+ L + Sbjct: 795 SVYQLRQGKLVSLVRQVLEETGLEPHFLELELTESQLLDSVEHIIATFQQLRGLGVKLAI 854 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL IP D VK + + + G E + AI R+II MA + ++A+ + Sbjct: 855 DDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLAEGGEDAAITRAIIAMAHGLSLKVVAEGV 914 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L CD +Q ++ P+ + LL+ + Sbjct: 915 EDPAQLAFLKAEHCDEVQGYLISRPVAAEGLALLLQAQ 952 Score = 132 bits (332), Expect = 3e-28, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 119/383 (31%), Gaps = 37/383 (9%) Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244 + LY+G ++ +L L +++ + + +L +++ ++ + Sbjct: 28 ERTRLLYQGSLLPTLFMLLNGLVCTWLLWSPARYLLLSVWMVWLLALVALRVIQVAAFDS 87 Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304 L S++ ++ + + + +S Sbjct: 88 AIPSRQAQPVWQRMFLLGSAVSGLTLACAGIAL-VPTDNFLQQAWVFGLIGAAILSASVA 146 Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364 + A ++ L I Y G ++ +++ + + + + + Sbjct: 147 YAVSLQAFLSFTLPCLL--PAIAYLFWGGDDQQRGWGWLGLILLVSLSVVAWQVNRLMQR 204 Query: 365 DIIQPALVGGLVL--------------------------------IVILIGFTVIQHVLA 392 +++ L+ + V Q L Sbjct: 205 GLLRRFQNQALIEHLQNAQGRSDQLNRELAREVEQRRRAEEQLREAQTGLEQRVAQRSLE 264 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 +Q + R +LA+ S +WDW++ D V T I + GL + + + Sbjct: 265 LDAANQALSKSEARLALALNASELGLWDWNLQTDEVHHT-QIKELFGLEPEDVTAMLSHL 323 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILR 511 P +H D + L + R Q E+RVR + W+ R R + + +G +LR Sbjct: 324 KPRLHPEDLPLLKRALVEHLKGRSDDYQVEYRVRHGAGHWVWIEDRGRAVERSPSGRVLR 383 Query: 512 YIGIANDITEQKKSLEGILCNAF 534 G DI+ K+ A Sbjct: 384 MAGTRRDISADKELEVQRNLAAT 406 >gi|256821584|ref|YP_003145547.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256795123|gb|ACV25779.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kangiella koreensis DSM 16069] Length = 887 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 135/565 (23%), Positives = 253/565 (44%), Gaps = 19/565 (3%) Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPY 455 ER + V S + D D + P I G + + G L Sbjct: 332 QHEERAKILERSVESSTHGLLISDARADDFPTIYVNPAFERITGYSKEDIIGKNCRILQG 391 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + R + + + + + + D W + I P+ + N ++ +IG+ Sbjct: 392 --PDTDQKVRQAIHNALEQQTE-ISTIIKNYKKDGTPFWNELLISPVKDDNDNVTHFIGL 448 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 NDITE+ + E + +A D LT + NR + LT+ D ++ ID+D Sbjct: 449 QNDITERIQRQETLEFHASHDPLTHLKNRSALERYLTSW--AKNKDQISNTYILFIDLDG 506 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG GD +LV +R+ + P++LAR G+ F ++ +S ++ A Sbjct: 507 FKPINDSLGHEFGDQILVETAQRLNSEIVEPNMLARFGGDEFVAVIQDLTDSHQVEALAR 566 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + +A + + E++++A+IG S S E+++ A++AMY AK RGG+++ Sbjct: 567 KLLERVAESYKVDDIEVSLSAAIGITSSQESFKHPMELIQRADIAMYEAKKRGGSYIYWH 626 Query: 696 RVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + L A+ ++ L Y PI+ + I G+EALI+W HP G +S Sbjct: 627 TAELNTNIDQQVAVRAQLQDAILQNQFELFYQPIMSHDNN-IGGVEALIRWKHPIKGYVS 685 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +EF+ +AE I I+ ++L R DI + + +N + + E Sbjct: 686 PAEFIPVAERTGQIIPISEWVLNRACTDIQELKRFGIN---SVSVNFSPIQFYREDFVEK 742 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + + P I + +E+V++ + + LL LR++G+ + +DDFG+ + L YL Sbjct: 743 IAETLKHHNIQPGEITVEITENVLVHDTDHITELLNELRQLGLDVAIDDFGSGFASLRYL 802 Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P + +K + S + AI R I+ M +E ++A+ + + + + L Sbjct: 803 NMLPVNKLKIDRSFTGNIHQNKHNAAITRGILGMTTEMEIEVVAEGVETDEEYQYLREHK 862 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 CD++Q P+ +++ +K R Sbjct: 863 CDFMQGYLFCRPIPIKELIEWVKNR 887 Score = 53.0 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 9/131 (6%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 ++ + + V+ +D+ + ++ + + + + D Sbjct: 217 EQQNRSLFTHNPEAVFTFDLEGHFTSVNKATCELMKCSENELLNQHYSVA--VTEQDLAR 274 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAAD--NQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + R + + D H++ + P+ +G + GIA D+T Sbjct: 275 TDEHFYAARRGIPQRYE----ILTPDMQGNIHYLHVTNMPII-VDGQVTGVHGIALDLTR 329 Query: 522 QKKSLEGILCN 532 +K+ E Sbjct: 330 EKQHEERAKIL 340 >gi|116050020|ref|YP_791166.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115585241|gb|ABJ11256.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 864 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 138/619 (22%), Positives = 256/619 (41%), Gaps = 17/619 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 AW+ L L ++ L+ L +L V + +Q + Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ER + D +W+ D + + G + G L + +D Sbjct: 300 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRR---LDELLDSDT 356 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 N L+ R + Q + + N G Y G A DIT+ Sbjct: 357 VNIVKWLEGLPDAETPS-SLVCAFRDSQGQARVGKLSASAIRN--GVASGYRGTAADITD 413 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + ++ I + D LTG+PNR L +L + V+++D+D++K IND Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD VL ++ R+ + D++ARL G+ F ++ ++ L+ F + I Sbjct: 472 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLETEKFCSRLIDVI 531 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 I V ASIG A +L+ A++AMY AK G N + + Sbjct: 532 NREIAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + + +L A++N E L Y P ++ I EALI+W+HP+ G I EF+ Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPRRGLIGPDEFIG 651 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++L SW + + + +N++ + ++ ++ + Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 R++L +E+V++ + + + + L+++G+ L +DDFGT S L YL PFD Sbjct: 707 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 ++K + + + + +I+++II + + + A+ + E + L C +Q Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826 Query: 938 SHVASPLGFNSILKLLKER 956 ++ PL + LL Sbjct: 827 FLLSRPLDAQGLRDLLARE 845 >gi|310765480|gb|ADP10430.1| sensory box protein [Erwinia sp. Ejp617] Length = 946 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 142/529 (26%), Positives = 243/529 (45%), Gaps = 14/529 (2%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + + +LG + G L + F L S + GR + E Sbjct: 422 VSGEILLINHRAQRLLGGSQRDFIGKRA--LECMTAAMSAYFMQ-LSSAAQRKGGRQRNE 478 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 ++ + + + + IA+D+T+Q+ + I A DNLT +P Sbjct: 479 RQLTTPSGDRI-ISGSASIVCGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 537 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F LTT L D V+ +D+D +K +ND LG VGD +L S+ R+ + Sbjct: 538 NRVLFNQHLTTAL-REDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSV 596 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L+ D LAR G+ F I+L +S + A + ++I P + +++ SIG Sbjct: 597 LRDRDTLARNGGDEFSIVLPGLTHSEEAEAVARRLIETIRPPFTIDGHNLSIGLSIGITL 656 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720 + + +L+ A++A+Y AK G N E F + R +I+ DL A+ +L Sbjct: 657 AQNGMTSPDYLLRCADMALYAAKRNGRNRFEYFTKAMGDTAQKRRVIENDLREAITYRQL 716 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y PI EI+G EAL++W HP+ G I EF+ IAEE +I ++ + L R Sbjct: 717 KLYYQPITNNQHREIIGYEALMRWHHPEKGIIMPLEFIPIAEETGLIHSLGAYALYEACR 776 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + SW + + +N++ + L ++ + ++ +P R+++ +ESV++ N Sbjct: 777 EAASWPGEQ-----TVAVNLSPLQFKNGALIAVVEGALKESGLAPHRLEVEITESVLLDN 831 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898 + +L L+ +G+ + LDDFGT S LSYL PFD +K + S + + R AI Sbjct: 832 TLANIDMLRELKALGVHIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMHDSREALAI 891 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 +R+I M+++++ I A+ + + L GC Q P Sbjct: 892 IRAIAGMSRSLDIQITAEGVESNEQFQRLKAEGCTLFQGYFFGRPQPSE 940 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 3/153 (1%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATI 437 L+G+ + + Q + L V D ++ D+ V Sbjct: 235 GKLLGYAKMTRDCSEQQRLQREQQRDQTFRLLVESVNDYAIYMIDLKGLVVNWNAGACRA 294 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G ++ DR + GR + D W + Sbjct: 295 KGYTGNEIIGKHFSYFYG--EQDRRLNLPEKNLQQATLTGRFEDSGWRYRKDGSAFWAHV 352 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 I + + G+++ + I D TE ++ + IL Sbjct: 353 VIDAIRDDGGELIGFAKITRDCTEVREYEQQIL 385 Score = 50.3 bits (119), Expect = 0.002, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 3/141 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATI 437 L+G+ + + Q + L V D ++ D+ V Sbjct: 108 GKLLGYAKMTRDCSEQQRLQREQQRDQTFRLLVESVNDYAIYMIDLKGLVVNWNAGACRA 167 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G ++ + DR + GR + D W + Sbjct: 168 KGYTGNEIIGK--HFSCFYGEQDRRLNLPEKNLQQATLTGRFEDSGWRYRKDGSAFWAHV 225 Query: 498 RIRPMSNSNGDILRYIGIAND 518 I + +G +L Y + D Sbjct: 226 VIDAIYGDDGKLLGYAKMTRD 246 Score = 40.7 bits (94), Expect = 1.3, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 2/102 (1%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 V+ + + + G + G RN+ + D+ + L V Sbjct: 20 AVYMLTPEGNVASWSRGAQHAKGYLPAEIVG--RNFSCFYSQQDQMQGQPQLGLQVARDA 77 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 GR E D W + I + +G +L Y + D Sbjct: 78 GRFTTEGWRYRKDGSAFWAHVVIDAIYGDDGKLLGYAKMTRD 119 >gi|229154330|ref|ZP_04282450.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] gi|228629154|gb|EEK85861.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] Length = 566 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 140/564 (24%), Positives = 254/564 (45%), Gaps = 28/564 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL + + G Sbjct: 301 FFTGELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALARCSTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPDEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 ISVRSILRRTGFPANRLILEITESIGVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951 MGCDY+Q + A PL + K Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKK 561 >gi|320007035|gb|ADW01885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces flavogriseus ATCC 33331] Length = 724 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 135/581 (23%), Positives = 250/581 (43%), Gaps = 16/581 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LA 441 + A + Q + + R + + D+ + + + + G L Sbjct: 145 EAIARSALTARSHAEQALHATEARFRAVFKDAAVGIGIADLDGNILEINDTLTRMFGGLE 204 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + W +H D + + V R E D W + + Sbjct: 205 NHVRSHKVNEW---VHPEDSPHVWKYYEELVRGEREHYSVEKPYYRNDGTVLWTNLTVSL 261 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + G + + D TE++ + A D LTG+PNR F +RL L Sbjct: 262 LRDPEGRPEYQLALLEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALA---PR 318 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGII 620 + +R + +D+D +K IND LG A GD +LV + R+ +++ARL G+ F + Sbjct: 319 EGMRFGLCYLDLDGFKAINDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVAL 378 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 ++ + A + ++A P+ L RE+TV SIG S + T +E+L++A++ Sbjct: 379 TTGPRTEDEVHELAGRILLALATPVRLDGRELTVRGSIGVVEGPSGERTPAEVLRSADIT 438 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK GGN + + L A++ E ++ Y P++ L D + G Sbjct: 439 MYRAKAAGGNRFALADAEADARAITRHGLTTALPTALDRGEFFIEYQPLVHLGDGSVHGA 498 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFIL 797 EAL++W HP+ G + F+ +AE +I + ++LE R W+ + P+ I Sbjct: 499 EALVRWCHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEESVRQANFWKERHTDGGPLRIN 558 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++ L L ++ ++ P + L +ES ++G + L +L ++G+ Sbjct: 559 VNLSPTQLHHPSLVAETVDVLERSGLEPGALCLEVTESALIGADDDLLKPLRQLAEMGVD 618 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETT 912 + LDDFGT S L+ L +P +K + S G + I+ I+ +A +++ Sbjct: 619 IALDDFGTGYSNLANLRRLPVSVLKLDRSFTQGMQHHPADPVDLKIVEGIVSLAHSLDLA 678 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + + ++L ++GCD Q + A P + I LL Sbjct: 679 VTVEGVETGAQAEQLRQIGCDTAQGWYYARPGAPDRIHSLL 719 >gi|209519965|ref|ZP_03268745.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia sp. H160] gi|209499616|gb|EDZ99691.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia sp. H160] Length = 770 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 142/617 (23%), Positives = 274/617 (44%), Gaps = 20/617 (3%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 I A+ R A L I +G V Q +A Q + ER Sbjct: 150 AGTILGAFAVYYRTTRRPTPEA-EAVLRDIGNSVGLAVHQDTMA-----QRLAHSEERHR 203 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI- 467 L V + + + P +L + S + ++ + D Sbjct: 204 LVVDHLSEGIVVQSRTGVVLACNPSAQRMLHVTSQIVGRSMQTVMTRAFGEDGAVVGETN 263 Query: 468 --LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKK 524 + + L ++ + + W+ + P+ + + + +DI ++ Sbjct: 264 LPVAQVFATAKPMLGVTIGLQLTNGEVVWITENVVPILRPGDTEPDSVLISFSDIGPVRE 323 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT---VMVIDIDKYKKIND 581 + + A +D+LTG+ NR ++R+ + A D V+ +D+D +KK+ND Sbjct: 324 AQRQLKFLATRDSLTGLYNRAYLIERMRDLFAPRADDTGDELADVAVLFVDLDGFKKVND 383 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKS 640 G GD +L S+ R+ + D LAR+ G+ F I++ + ++ ++ A + Sbjct: 384 TAGHEAGDALLCSVAERLSACVGRGDTLARVGGDEFVIVVSAYGGDTDELIGLANRVLDM 443 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 IA+P + E + ASIG + + + +++NA+ AMYHAK RG N+ + F Sbjct: 444 IAVPFAVAGNEYYLGASIGISLFPEDGQDVATLMRNADSAMYHAKQRGRNNFQFFTAELN 503 Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + I++ L A+ +EL LVY PI+ +G EAL++W + + GN+S EF+ Sbjct: 504 QHLQRRFTIEQSLRRALAANELSLVYQPIVDSHSGRTIGAEALLRWYNSELGNVSPGEFI 563 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AE+ +I I ++LE + WR P + + +N++ + D L E ++ + Sbjct: 564 PVAEDAGLIVEIGDWVLEHACEQVAQWRRTLA-PHLIVAVNLSPRQFND-GLLERIERCL 621 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +++ P+ ++L +E ++M + + +L L +G+ +++DDFGT S LSYL P Sbjct: 622 AQSGLEPAALELEITERLLMSDSDTVLPMLSALNAMGVRVSVDDFGTGYSSLSYLKRFPL 681 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + S + G IAI ++++ MA ++ + A+ + L + CD Q Sbjct: 682 HNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQAAFLRAIDCDKQQ 741 Query: 937 DSHVASPLGFNSILKLL 953 + P+G ++ + L Sbjct: 742 GYLYSRPVGASAYARTL 758 >gi|71737704|ref|YP_273433.1| sensory box protein/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558257|gb|AAZ37468.1| sensory box protein/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 705 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 144/585 (24%), Positives = 263/585 (44%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMTHYDALTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + +++D +K IN+ G +GD+VL+ ++RR+ E L D L R+ G Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ + +R ++ +P L + I +TASIG A + S E++ Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+A AM AK G + + R+ ++ L AV+ +VY P + L D Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + GLEAL++W P IS + F+ + E L +I + ++++ + I W+ Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 535 SFQVAVNISGQQIYSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + L+ Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699 >gi|229162679|ref|ZP_04290636.1| Sensory box/GGDEF [Bacillus cereus R309803] gi|228620561|gb|EEK77430.1| Sensory box/GGDEF [Bacillus cereus R309803] Length = 801 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 158/737 (21%), Positives = 315/737 (42%), Gaps = 50/737 (6%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + H V + + L ++ Sbjct: 85 PTIFKSKWKIYIFIFVLISSAAFNYIYFYLNTHLSHDTVALLRLLYRIPLL-LVAIAASI 143 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363 P + ++ + VL + + + + + ++ Sbjct: 144 PNSLTNNTSYSVVNPVLGKKVLVTF-----------------PYLVVAFLIGFTLKEQTA 186 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLATGYFSQGIFS 402 + I+ V ++I +Q S+ + Sbjct: 187 SSILITGNCITFVFVLIRHSIGRMQNNSLTERLQFFNAQLEEKVAVRTSDLVQKSEALSQ 246 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 ++ D ++ D+ + +LG+A+ + G L I D+ Sbjct: 247 KQQKFESLYEYHPDPIFTIDLNGIFLNVNKAGGMLLGVATSELLGNTC--LSIILDEDKH 304 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + L+ LQ R + + +++ + I P+ I I DIT Sbjct: 305 KLASALEKVKKQEPTSLQL--RSQYNNGFTYFLYVTIVPIMIDE-QISGSYIIVKDITAF 361 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 KK E I AF D +T I NR F L ++ + ++ ++ +D+D++K IND Sbjct: 362 KKQQEEIKYLAFHDTVTKIGNRAFFHKILKKVIKKAKITES-EFALLYLDLDRFKIINDT 420 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG + GD +L + +R L L+R+ G+ F II+ + + + + + +S+ Sbjct: 421 LGHSSGDYILEEVAKRFQACLPSHAHLSRIGGDEFTIIIENYTDEDSLFELCNQLFESME 480 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700 P + E +T++ SIG A + S I ++ +LKNA +AMY AK + ++ Sbjct: 481 KPFVIHEHTLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDNVIAKK 540 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ I Sbjct: 541 IERRLRLEKDLPNAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPI 600 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE I I + L++ + W + I +N+++K+ + + + + ++ Sbjct: 601 AEETLQIIPIGKWTLQQACEQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISSTLAT 659 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T S + L +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT Sbjct: 660 TGLPASSLDLELTERIAMMDERETLIKLRTLKNLGVHISIDDFGTGYSSLAYLPLYPIDT 719 Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + + + E + I+++II +A +E ++IA+ + + + L + C +IQ Sbjct: 720 LKIPREFITMSETCEDGMEIIKTIITLAHTLEMSVIAEGVETKEHVHFLQQNKCQFIQGY 779 Query: 939 HVASPLGFNSILKLLKE 955 + + P+ ++ LLK+ Sbjct: 780 YYSKPIHADAFSTLLKK 796 >gi|260462306|ref|ZP_05810514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Mesorhizobium opportunistum WSM2075] gi|259031800|gb|EEW33068.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Mesorhizobium opportunistum WSM2075] Length = 713 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 141/590 (23%), Positives = 257/590 (43%), Gaps = 30/590 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + + Q + R A+ + +D + + + + Sbjct: 140 VSIYEDITEQRRAEQDLKEQHRRFDAALANMSQGLLMYDADGKMIVRNERFLELFKVKAA 199 Query: 444 S--MHGPIRNWLPYIHIN------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + R+ L + D D+ ++ R G++ +R AD + Sbjct: 200 DFPLGTTHRDALERLLELGIYTQIDVDSEVAKTEACR--RAGKIHSAYR-HLADG--RTI 254 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 ++ RPMS ++ +D+TE++++ E + A D LTG+PNR F +RL L Sbjct: 255 LVTRRPMSGG-----GWVATFDDVTERRRTEERMTHLAHHDTLTGLPNRSMFRERLDFAL 309 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSG 614 + +A V +D+D++K IND G GD +L + R+ L DI+AR G Sbjct: 310 EDAAATP---LAVFSLDLDRFKAINDTWGHPAGDWLLKCVAERLQRCLRNETDIVARFGG 366 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F ++ + A + ++I+ P R++ V S+G A + + +L Sbjct: 367 DEFVVMQSNFKGIANAEKMAKRIVEAISKPFRDENRDMHVGISLGIAVFPDDGRDADALL 426 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMD 732 KNA+ A+Y AK G N F + ++ DL A+ EL L + PI+ + Sbjct: 427 KNADTALYRAKSEGRNLYRFFEPEMDAMVQTRRALEVDLETALPRQELDLDFQPIMNIAS 486 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 EI G EAL++W P G ++ +F+ +AE+ +I + + L + W P Sbjct: 487 GEITGAEALMRWHSPARGTVAPDQFIPVAEDTGLIVPLGEWALRKACAAAAGWP-----P 541 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + I +N+++ L + + + ++ + S +++L +E+V+M + L +LR Sbjct: 542 GLRIAVNVSAVQLRSDGFARSVISALAFSGVSAGQLELEITETVLMDESKAVLKALRQLR 601 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911 +GI + LDDFGT S L YL P D +K + S + AI+R+II + + Sbjct: 602 DLGIRIALDDFGTGYSSLGYLRRFPVDKIKIDRSFIRDLGNRDTAAIVRTIIGLGTELGI 661 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 + A+ + E+ + L GC Q + P I +LLK R P + Sbjct: 662 VVTAEGVETEVQLDMLRHNGCTEAQGYLIGVPSKAADIQRLLKSRAPRSQ 711 Score = 43.0 bits (100), Expect = 0.29, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 11/158 (6%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ + + + + ER S AV + +D + + I Sbjct: 9 GSIVPERAAEGMERSRRMEDELREQNERFSAAVGNMSHGLCMFDADERMIICNGNYIDIF 68 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY----EFRVRAADNQFHW 494 L + + I H D + R+ + + AD + Sbjct: 69 CLDAKVVRPGISFIDILRHSVDIGIASQSANELYAIRKPYIDQAKPSTYEEALADGRIIR 128 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + R P+++ ++ I DITEQ+++ + + Sbjct: 129 ISHR--PLASG-----GWVSIYEDITEQRRAEQDLKEQ 159 >gi|228919483|ref|ZP_04082847.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840126|gb|EEM85403.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 569 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 ++ F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KNFFQELWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ G Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565 >gi|167640924|ref|ZP_02399182.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|177652778|ref|ZP_02935151.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|254738759|ref|ZP_05196462.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western North America USA6153] gi|167511144|gb|EDR86532.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|172081812|gb|EDT66881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] Length = 567 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 258/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ D ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ IAEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563 >gi|17545307|ref|NP_518709.1| hypothetical protein RSc0588 [Ralstonia solanacearum GMI1000] gi|17427599|emb|CAD14118.1| probable signal transduction protein eal-ggdef domains [Ralstonia solanacearum GMI1000] Length = 903 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 138/575 (24%), Positives = 257/575 (44%), Gaps = 12/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447 + + ++ + ER LAV + + + P IL G S Sbjct: 325 AVQKAHIARELQESEERYRLAVDNLTEGILVQAADGTILACNPSARRILRAGDQSPVGAS 384 Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + + + + + R L + + W+ + P+ Sbjct: 385 HLTLMRRSLREDGSEIPFLERPTRVVLTTGRPLLGLTIGLELINGDVVWVYENVLPIMRP 444 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + NDI + + + + A +D LTG+ NR FL R+ +LD + TD Sbjct: 445 GDATPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDEAVTDGR- 503 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D +KK+ND G GD +L + +R+ ++ D LARL G+ F ++L Sbjct: 504 QAAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQV 563 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + +IA P + E + ASIG A ++ +L+ A+ AMY+A Sbjct: 564 RSLAEAEQLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPDHGQDAATLLRCADAAMYNA 623 Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F R +++ L A+ EL L + PI+ IVG E L+ Sbjct: 624 KQNGRNQHRVFTAQLSQRAQRRFQLEQHLRRALSAQELSLRFQPIVDAASMGIVGAEVLL 683 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G +S +EF+ +AE+ +I AI ++LE+ R WR P FI +N++ Sbjct: 684 RWHSAELGEVSPAEFIPVAEDAGLIIAIGEWVLEQACRQAAHWRRTCA-PDFFIAVNLSP 742 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + D L + ++++ +++ +E ++M + +L L +G+ +++DD Sbjct: 743 RQFGDA-LVPMLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P D +K + S ++G R +++ R+++ MA +++ T+ A+ + Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q +P+ + + L+ Sbjct: 862 LAQAEFLQAAGCDKLQGFLFGAPMSAAAYEERLRR 896 Score = 43.0 bits (100), Expect = 0.23, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 7/145 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLP 454 ++ + +R V D ++ V +LG ++ + G + Sbjct: 19 AARPLPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSASDIVGRELD--A 75 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 ++H + R + + + G E + D + I P+ G Sbjct: 76 FVHEDSVQLARQRREWMIEHGAGLPPVEQTLLRCDGTPVDVEILSAPV--QLGWRTAVQV 133 Query: 515 IANDITEQKKSLEG-ILCNAFQDNL 538 +A DI ++K + + A L Sbjct: 134 VARDIRQRKHAEQALRESEANYRAL 158 >gi|217968967|ref|YP_002354201.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|217506294|gb|ACK53305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 814 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 135/586 (23%), Positives = 237/586 (40%), Gaps = 33/586 (5%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP----DIATILGLASG 443 + V A + + V + W D+ +LG Sbjct: 241 REVTARERMERALQEQESLLRAVVDNTPVEYWARDLDGRCTLQNAMTVAHWGDLLGQRPE 300 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 R + + E+ V D + + P+ Sbjct: 301 E---------SAKEPAARTEWLETNRRAYAGETVHREVEYEV---DGETRIFQCLVAPIR 348 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G+++ G DITE+K+ I AF D LT +PNR+ DRL L SA + Sbjct: 349 -VGGEVVGIFGFNQDITERKRQEHQIHELAFFDPLTRLPNRRLMFDRLERALGSSARRRH 407 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +++ID+D +K++ND G GD +L+ + R+G ++ D ARL G+ F +IL Sbjct: 408 -QGALLLIDLDHFKELNDSHGHEAGDQLLMKVAARLGLSIREGDTAARLGGDEFVVILED 466 Query: 624 ENNSLK----IADFAIAMRKSIAMPINL------LEREITVTASIGFASWTSSKITSSEM 673 + I A + + + P L +ASIG +++ + ++E+ Sbjct: 467 LEDVADELLHIKAVADRIGRELGRPFQLQRGTAGETISYQCSASIGISAFGEPGVGAAEL 526 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 L+ A+ A+Y AK G N V F + R + DL A+ + L Y + Sbjct: 527 LRRADTALYQAKAAGRNAVSFFDPIMQAAVTARARLHSDLRQAIRGGQFELHYQVQVDAQ 586 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 G EAL++W HP+ G I F+ +AEE +I + ++L R + W Sbjct: 587 -RRPAGAEALVRWRHPEKGLIHPGGFIDLAEETGLIVPLGHWVLATGCRQLALWARHPAT 645 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +N++++ + ++AL+ +T R+KL +ES ++ + E + L Sbjct: 646 AHLRLAVNVSARQFRQPSFADEVRALLEQTGAPADRLKLELTESSLIEDTEAVIERMETL 705 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 R +GI LDDFGT S L+YL +P +K + S + +I+R+I+ + ++ Sbjct: 706 RALGIRFALDDFGTGYSSLAYLKRLPLAQLKIDQSFVRDLMSDPNDASIVRTILALGDSL 765 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + E L GC Q P+ + L Sbjct: 766 GLAVIAEGVETEAQYAFLAAHGCRAYQGYLFGQPVALDVFEAGLAA 811 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 11/148 (7%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + D R A+ ++ D V ++L + + G + Sbjct: 1 MNDDNARLRAAIDTLRVPIYMKDADGRYVYANDLACSLLKRSRDDVVGRCDQ--DLFPPD 58 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + R + R + E+ + +P+ ++ G + IG+A DI Sbjct: 59 QAEVLRRNDLQVIATARAVVIEEYLSFPDAPVPRCCMNIKQPVVDAGGRPVGVIGLAIDI 118 Query: 520 TEQKKSLEG---------ILCNAFQDNL 538 +K+ + A D L Sbjct: 119 EARKQQERELVGLKNDYAAILQALPDPL 146 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 6/150 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLAS 442 + + A + + + + D ++++DI TPD +L Sbjct: 112 IGLAIDIEARKQQERELVGLKNDYAAILQALPDPLFEFDIEGRCHGYRTPD-EDLLAAPP 170 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G R + + + L R + F+V A W + + PM Sbjct: 171 EVFLG--RTVREVLPPEEAEVCLEALREAAAKGRSTGKV-FKVEAPQGT-RWFELSVAPM 226 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532 +++ G R+ ++ ++T +++ + Sbjct: 227 ASAAGRTQRFNVLSREVTARERMERALQEQ 256 >gi|309780654|ref|ZP_07675396.1| developmental regulator MorA [Ralstonia sp. 5_7_47FAA] gi|308920577|gb|EFP66232.1| developmental regulator MorA [Ralstonia sp. 5_7_47FAA] Length = 772 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 253/577 (43%), Gaps = 13/577 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + ++ + ER LAV + + + P IL S S G Sbjct: 192 AVQKAHIARDLRESEERYRLAVDNLTEGIVVQAADGTILACNPSARRILRAGSVSPVGTS 251 Query: 450 R-NWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + D + R L + D W+ + P+ Sbjct: 252 HLALMRRSLREDGSEIPVNERPTRVVLATGRPLLGLTVGLELVDGDVVWVHENVLPIVRP 311 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDD 562 + + NDI + + + + A +D LTG+ NR F R+ +++ + ++ Sbjct: 312 GDDTPSAVLISFNDIGPARAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVMEQAASQANE 371 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + V+ +D+D +KK+ND G GD +L + +R+ ++ D LARL G+ F ++L Sbjct: 372 ARQVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQSDTLARLGGDEFVVLLD 431 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + A + SIA P + E + ASIG A + ++ +L+ A+ AMY Sbjct: 432 NVRSLGEAERLAKRIVHSIAQPFSTSGTEYYLGASIGIALYPEHGNDAATLLRCADAAMY 491 Query: 683 HAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 +AK G N + R ++ L A+ EL L + PI+ +IVG E Sbjct: 492 NAKQNGRNQHRVYTARLSQRAQRRFQLEYHLRRALTAGELSLRFQPIVDATSMDIVGAEV 551 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W + G +S +EF+ +AE+ +I I ++L + R WR MP F+ +N+ Sbjct: 552 LLRWHSTELGEVSPAEFIPVAEDAGLIGDIGEWVLAQACRQAAHWRA-TCMPEFFVAVNL 610 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + L + +++ S +++ +E ++M + +L L +GI +++ Sbjct: 611 SPRQFG-EGLVPTISRCLTEAGLPASALEMEITEGLLMRDTAAVMPMLDALTALGIRISI 669 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL P D +K + S ++G R +++ R+++ MA +++ T+ A+ + Sbjct: 670 DDFGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGV 729 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q P+ + L+ Sbjct: 730 ETLEQAEFLQAAGCDKLQGFLFGPPMTAAAYESRLRR 766 >gi|71281954|ref|YP_271587.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71147694|gb|AAZ28167.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 921 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 124/437 (28%), Positives = 211/437 (48%), Gaps = 6/437 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I E+K++ + A D LTG+PNR F DRL + LS + + V +D+D +K Sbjct: 465 INERKQAEYQLKHLALHDPLTGLPNRLLFQDRLEQAIALSDRHQH-KFAVFFMDLDNFKI 523 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G GD++L ++ R+ + D +ARL G+ F I+ N FA + Sbjct: 524 INDTMGHDAGDELLKQVSLRLSCTGRKTDTVARLGGDEFAFIITKVNTIEDAVTFAQRLN 583 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + PI + I + +SIG + S E+L+NA++AMY AK G N V F Sbjct: 584 SLLKTPIEINGNNINMGSSIGITIYPDDAANSEELLRNADIAMYQAKDDGRNTVRFFTSE 643 Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + DL ++ L Y P+ + +VG EALI+W HP+ G I + Sbjct: 644 MNARLQRNKEVLTDLAESLTKEHFELYYQPLFTIDQNILVGAEALIRWHHPEKGMIPPDQ 703 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I + ++L + R+I ++ + + INI+ +L + M Sbjct: 704 FIAVAEKSGLINELGDWVLAQACREIKNFLNAGITV-FKVAINISPVQFRRKDLLQHMLM 762 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++ S I+L +E VM N +++ + L G L +DDFGT S LSYL Sbjct: 763 ILAQHDVSAELIELEITEGAVMDNVDQAIETMQALHDAGFQLAMDDFGTGYSSLSYLKRF 822 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P VK + S ++ + +I +II M+ ++ ++A+ + E + L CDY Sbjct: 823 PIQKVKIDRSFISDLENDDDSKSITTAIIQMSHSLGLHVLAEGVETEEQLHYLQAEKCDY 882 Query: 935 IQDSHVASPLGFNSILK 951 +Q + P+ + +K Sbjct: 883 VQGYYTGRPIPASEFIK 899 >gi|241662113|ref|YP_002980473.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12D] gi|240864140|gb|ACS61801.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12D] Length = 907 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 253/577 (43%), Gaps = 13/577 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + ++ + ER LAV + + + P IL S S G Sbjct: 327 AVQKAHIARDLRESEERYRLAVDNLTEGIVVQAADGTILACNPSARRILRAGSVSPVGTS 386 Query: 450 R-NWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + D + R L + D W+ + P+ Sbjct: 387 HLALMRRSLREDGSEIPVNERPTRVVLATGRPLLGLTVGLELVDGDVVWVHENVLPIVRP 446 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDD 562 + + NDI + + + + A +D LTG+ NR F R+ +++ + ++ Sbjct: 447 GDDTPSAVLISFNDIGPARAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVMEQAASQANE 506 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + V+ +D+D +KK+ND G GD +L + +R+ ++ D LARL G+ F ++L Sbjct: 507 ARQVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQSDTLARLGGDEFVVLLD 566 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + A + SIA P + E + ASIG A + ++ +L+ A+ AMY Sbjct: 567 NVRSLGEAERLAKRIVHSIAQPFSTSGTEYYLGASIGIALYPEHGNDAATLLRCADAAMY 626 Query: 683 HAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 +AK G N + R ++ L A+ EL L + PI+ +IVG E Sbjct: 627 NAKQNGRNQHRVYTARLSQRAQRRFQLEYHLRRALTAGELSLRFQPIVDATSMDIVGAEV 686 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W + G +S +EF+ +AE+ +I I ++L + R WR MP F+ +N+ Sbjct: 687 LLRWHSTELGEVSPAEFIPVAEDAGLIGDIGEWVLAQACRQAAHWRA-TCMPEFFVAVNL 745 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + L + +++ S +++ +E ++M + +L L +GI +++ Sbjct: 746 SPRQFG-EGLVPTISRCLTEAGLPASALEMEITEGLLMRDTAAVMPMLDALTALGIRISI 804 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL P D +K + S ++G R +++ R+++ MA +++ T+ A+ + Sbjct: 805 DDFGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGV 864 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q P+ + L+ Sbjct: 865 ETLEQAEFLQAAGCDKLQGFLFGPPMTAAAYESRLRR 901 Score = 40.3 bits (93), Expect = 1.8, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 7/141 (4%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458 + +R V D ++ V + G + + G + ++H Sbjct: 25 LPLADDRYEALVRQMPDALYIV-ADDIIVFVNEAGVRLFGAQTARDIVGHELD--EFVHD 81 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 N R + V + G E + D + + P+ G +A D Sbjct: 82 NSMHLARQRREWMVSHGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAIQVVARD 139 Query: 519 ITEQKKSLEG-ILCNAFQDNL 538 IT++K++ + A L Sbjct: 140 ITQRKQAEQALRESEANYRAL 160 >gi|217972779|ref|YP_002357530.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223] gi|217497914|gb|ACK46107.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella baltica OS223] Length = 1410 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 131/561 (23%), Positives = 258/561 (45%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 850 QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 907 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 F T + + + + GR E D M + I + + G++ Y+G+ +D Sbjct: 908 E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 963 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L+ +++ +MV+D+D +K+ Sbjct: 964 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1018 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG +GD +L + RI LL + RL G+ F I+L ++ A A + Sbjct: 1019 INDSLGHQIGDTLLKLVAARIKSLLPKSTSIYRLGGDEFAIVLDKGSDISASAAIANRVI 1078 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 + + + ++ + SIG + + + +L+ A++AMYHAK GGN + + Sbjct: 1079 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1138 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + +++ + Y P + L +I G+EAL++ +HP G I ++ Sbjct: 1139 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPVHGLIPPND 1198 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ ++ + +++ Sbjct: 1199 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFSG-RVAVNLSSRQFALPDIQQRIES 1257 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T ++L +E V+ PE + +++ +L K+G+SL LDDFGT S LSYL Sbjct: 1258 ILRLTKLPACHLELEITEGTVIKQPETAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1317 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1318 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1377 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + LL+E Sbjct: 1378 IQGYIFSKAIKETEFTLLLQE 1398 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 12/213 (5%) Query: 327 IYHGMKGYERAVL--LIPAWILIFIWFIGLWMAITKRLDN--------DIIQPALVGGLV 376 + KG A L P + ++ + +++ + Sbjct: 643 TWITAKGTNSATYTNLSPGHYIFNVFGENPVTGVKGPVNSLNIYISPPWWLSYWAKLIYF 702 Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 + V+L+ F +I+ VL + I ER L++ GSGD +WDWDI + + Sbjct: 703 ITVLLVAFFIIKAVLRKREVQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 762 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L + IH D++ R L+ + +RV+ D+ + W++ Sbjct: 763 -LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWIL 821 Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 R + + + + LR G +I++ K+ E Sbjct: 822 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 854 >gi|27382691|ref|NP_774220.1| hypothetical protein bll7580 [Bradyrhizobium japonicum USDA 110] gi|27355863|dbj|BAC52845.1| bll7580 [Bradyrhizobium japonicum USDA 110] Length = 1390 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 133/442 (30%), Positives = 236/442 (53%), Gaps = 7/442 (1%) Query: 518 DITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D T++K ++ E I A D+LT +PNR++F L +D + D+ R V+ ID+D++ Sbjct: 920 DRTDEKNQADERIEYLASHDSLTDLPNRETFNGLLREAIDAAQRHDH-RFAVLFIDLDRF 978 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD +L+ + R+ L+ D++ARL G+ F +IL + A Sbjct: 979 KVINDSLGHEAGDLLLLEVANRLRGALRTSDVVARLGGDEFVVILDQCGEIDDVQRIATG 1038 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++A P+ L E TASIG A + ++ + + KNA++AMY AK G N F Sbjct: 1039 LLAALAEPMELAGHECHTTASIGIAMYPANGSDAQTLTKNADMAMYLAKEDGKNGYRFFS 1098 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + +R+ ++ L A+E + L Y P + + +I G+EAL++W HP GN+S Sbjct: 1099 KEVKTQSIERLSLESALRRALEREQFSLNYQPKVDMETGQITGVEALLRWAHPDLGNVSP 1158 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++F+ +AEE +I I ++L ++W+ + P+ + +N++ + +D L + + Sbjct: 1159 AQFIPLAEETGLIVPIGRWVLNEACAQAMAWQRRGL-LPLSMAVNLSPRQFVDEHLLQDV 1217 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ + SP ++L +ES++M N R+ +L ++ GI L +DDFGT S +S + Sbjct: 1218 DEALAASGMSPVLLQLEVTESMMMRNVGRALKVLDAIQSRGIRLAIDDFGTGYSSMSLMK 1277 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 + P DT+K + S + + AI ++II M K + T++A+ + L GC Sbjct: 1278 HFPIDTIKIDRSFVRDLPQDSEDQAIAQAIISMGKALGMTVVAEGVENVEQEAFLRTHGC 1337 Query: 933 DYIQDSHVASPLGFNSILKLLK 954 D +Q ++ PL + +LL+ Sbjct: 1338 DEMQGFLISKPLPARQMAELLR 1359 >gi|229593436|ref|YP_002875555.1| putative sensory box/GGDEF family protein [Pseudomonas fluorescens SBW25] gi|229365302|emb|CAY53651.1| putative sensory box/GGDEF family protein [Pseudomonas fluorescens SBW25] Length = 975 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 142/577 (24%), Positives = 268/577 (46%), Gaps = 9/577 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T + S+ + S + + + D + + + G + Sbjct: 398 RVTRMLGTRRDISASKALEEQQRLASTVFEAASEGIVILDPDYVLIAVNQAFSRVTGFET 457 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 M G LP + R +F I + + + G Q E + + + +++ + Sbjct: 458 DDMIGRNVVELPS-SRDARRHFPVIRQALLSH--GTWQGELVETRKNGELYPQWLQLNVV 514 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G + +G D++ +++S E + D LTG+ NR F +RL Sbjct: 515 RDVRGKVSHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLREA-HQRVRQG 573 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ I++D++K +ND LG V D +L + RR+ L D +ARLSG+ F ++ Sbjct: 574 GRSLALLHINLDRFKLLNDSLGHEVADQLLQKMARRLINALPEADTIARLSGDEFAVLFD 633 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + N +A A + + +P+ + E+ V+AS+G + + S ++ + +AM Sbjct: 634 AYGNLSSLARVATRLLAKLRVPVTVEGHELVVSASMGVSLLPDNAREISALVSQSNMAMQ 693 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAKH GGN+ + + S S R+ ++ L A+E +L + Y P + L ++ EA Sbjct: 694 HAKHLGGNNFQFYTDSLQASTLERLQLENHLRKAIEERQLSVFYQPKLCLATGKLNAAEA 753 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W+HP+WG + +F+ +AEE +I + F+L W+ Q PI + +N+ Sbjct: 754 LIRWEHPQWGMVPPGDFIGLAEETGLIVPLGEFVLREACWQACEWQRQGLA-PIRVSVNL 812 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L ++ ++ +T P ++L +ES ++ + E +LR +G+ L + Sbjct: 813 SVHQLRQGKLVSLVRQVLEETGLDPQYLELELTESQLLDSVEHIIATFQQLRDLGVKLAI 872 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL IP D VK + + + G + + AI R+II MA + ++A+ + Sbjct: 873 DDFGTGYSSLSYLKRIPVDYVKIDQTFIRGLGQGREDAAITRAIIAMAHGLALKVVAEGV 932 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + L CD +Q ++ P+ + LL++ Sbjct: 933 EDQQQLDFLRGERCDEVQGYLISRPMQAEGLADLLRK 969 Score = 129 bits (325), Expect = 2e-27, Method: Composition-based stats. Identities = 60/383 (15%), Positives = 129/383 (33%), Gaps = 37/383 (9%) Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMV-NRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243 + LY+G ++ +L L +++ N L+ + + W++ + Sbjct: 46 ERTRLLYQGSLLPTLLMLVNGLVCAWLLWNPKQYLLDSIWLVWLLALVAMRVIQVAAFDS 105 Query: 244 NLPSG-ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 +PS +WR + + S + + ++ + + + +S Sbjct: 106 AMPSRQAQPVWRRMFMLGSAVSGLTLATAAIAL---VPADSFMQQAWVFGLIGAATLSAS 162 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHG----MKGYERAVLLIPAWILIFIWFI--GLWM 356 + A ++ A L + ++ +G+ L++ A + + W + + Sbjct: 163 VAYAVSVPAFLSFALPCLVPSIIYLFWSGDPQQRGWGVLGLILLASLSLVAWQVNRLIQR 222 Query: 357 AITKRLDNDIIQPALVG------------------------GLVLIVILIGFTVIQHVLA 392 + +R N + L L + + V Q Sbjct: 223 GLLRRFQNQALIEHLQQAQQRSEQLNQELVREVEQRRQVEQELREAQVGLQDRVAQRSQE 282 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 S + R ++A+ S +WDW++ D V T + + GL + + + Sbjct: 283 LDAASLALNKSEARLAMALQASELGLWDWNLQTDEVHHT-QLKELFGLEPEYVTAMLGHL 341 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILR 511 P +H D + L + R Q E+RVR D + W+ R R + +G + R Sbjct: 342 KPRLHPEDLPLLKRALVEHLKGRSEDYQVEYRVRHGDGHWVWIEDRGRAVERAPSGRVTR 401 Query: 512 YIGIANDITEQKKSLEGILCNAF 534 +G DI+ K E + Sbjct: 402 MLGTRRDISASKALEEQQRLAST 424 >gi|77918291|ref|YP_356106.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380] gi|77544374|gb|ABA87936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pelobacter carbinolicus DSM 2380] Length = 947 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 143/646 (22%), Positives = 275/646 (42%), Gaps = 23/646 (3%) Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 V+ +Y Y M+ + A + +P + + + + ++ L G L Sbjct: 303 VVSTSYMFDYRQMQRFGLASVDLPP------GSTIVGRPPSFWMRHRLLITVLSGMAGLQ 356 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 +L G+ + + + + + + + D V + P + Sbjct: 357 -LLAGWFLWRLSGTRRGTQKYLHEKEAQFKTVIRATHDAVVVINERGLVTLFNPAAEELF 415 Query: 439 GLASGSMHGPIRNWLPYIHIN-----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 G +S M G L + R + + + E + Sbjct: 416 GWSSAEMLGCN---LDILMPEGYRDQHRHDVASFFSTGEPSEAVGRSLELLAVHRSGKEF 472 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + + + G + I DI+ Q++ I A+ D+LTG+PNR F DR Sbjct: 473 PIELSLSV--GKYGHERFVLAILRDISSQRQVEREIKQLAYYDSLTGLPNRALFEDRFRR 530 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +L + + ++ I +D IND G GD +L + +R+ + + + R Sbjct: 531 VLTTADRAGKM-AALLFIGVDNLNSINDTHGHTYGDKLLKVIGQRLVAVAQNGATVVRWE 589 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G++F ++L +++ A + +SIA P + ++ VTASIG A + ++ Sbjct: 590 GDKFVVLLPGLSDAETADTVARQILQSIAEPCEVDDQSFFVTASIGGAVYPQHGADGDKL 649 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731 LKNA++AMY +K G N +F R ++ +L LA+ E +L Y P + Sbjct: 650 LKNADMAMYASKELGRNTYCTFTEEMNRRVLERSGLEHNLRLALAREEFFLAYQPQVDQA 709 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 +++G EAL++W H + G IS +F+ +AEE +I I ++L+ +W+ A Sbjct: 710 TGKVLGSEALLRWRHAEKGMISPGQFIPLAEESGLILPIGHWVLQTACAQNKAWQ-LAGY 768 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 PP+ I +N++++ + + + ++ T P ++L +ES++M + + + L L Sbjct: 769 PPMRIAVNLSARQFQQPDFFDQVAQVLKDTELDPRYLELELTESLLMADADVAVETLRAL 828 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 R +G+ + +DDFGT S LSYL P D +K + AI+ ++I MA + Sbjct: 829 RDLGVGIAIDDFGTGYSSLSYLKTFPIDRIKIAQEFVLDITRDPGDAAIVETVIAMAHGL 888 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+A+ + E ++ L C +Q + P+ + ++ L E Sbjct: 889 GLDIVAEGVETEAQLEFLRARRCQVMQGYYFGRPMPAENFIEYLSE 934 >gi|326938344|gb|AEA14240.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 567 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ G Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 360 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563 >gi|30260782|ref|NP_843159.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47525907|ref|YP_017256.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183620|ref|YP_026872.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|165872950|ref|ZP_02217573.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167635210|ref|ZP_02393526.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|170689008|ref|ZP_02880208.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|170708489|ref|ZP_02898931.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|190568528|ref|ZP_03021434.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227816502|ref|YP_002816511.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229604486|ref|YP_002865226.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|254684295|ref|ZP_05148155.1| sensory box/GGDEF family protein [Bacillus anthracis str. CNEVA-9066] gi|254742030|ref|ZP_05199717.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B] gi|254754984|ref|ZP_05207018.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum] gi|254762284|ref|ZP_05214128.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia 94] gi|30254231|gb|AAP24645.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47501055|gb|AAT29731.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177547|gb|AAT52923.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|164711304|gb|EDR16858.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167529469|gb|EDR92220.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|170126610|gb|EDS95495.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|170666993|gb|EDT17756.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|190560322|gb|EDV14301.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227006073|gb|ACP15816.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229268894|gb|ACQ50531.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] Length = 567 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 258/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I N G+ ++I I NDI+ Sbjct: 69 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ D ++ D+ Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ IAEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 360 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563 >gi|157960586|ref|YP_001500620.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC 700345] gi|157845586|gb|ABV86085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella pealeana ATCC 700345] Length = 839 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 145/570 (25%), Positives = 260/570 (45%), Gaps = 12/570 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IR 450 + E S S + V D+ + + I G + G R Sbjct: 272 RNIASHKAAKDQLELASRVFENSVEGVIITDVDGAIIDAHGAYSEITGYTKEELLGQNPR 331 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 H + F + + + +G+ E R ++ I + + I Sbjct: 332 VLNSGRHK--KAFFTEMWNDLLS--KGKWHGEIWNRRKSGAIFPQMLNISAVYDIEHQIR 387 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + NDI+ QK+S + AF D LT +PNR + L L ++ N R ++ Sbjct: 388 FFVAVFNDISAQKQSEAELAKVAFHDPLTKLPNRMALNTGLEQELKQAS-HSNTRLGLVY 446 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K+IN+ G VGD+VL+ ++RR + L ARL + F ++L + +++ + Sbjct: 447 IDVDLFKQINESYGHPVGDEVLLEVSRRFSQSLGDLVTAARLGSDEFALLLPNIDSNDAL 506 Query: 631 ADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +RK P L E + +T+S+G A + S +L NAE+AM+ AK G Sbjct: 507 LQQINNLRKVFDQPFILGEHGQARLTSSMGVAIYPDDAQDPSGLLVNAEIAMHRAKQDGR 566 Query: 690 NHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N+ + + ++ ++ L A+E + LYLVY P I + ++VG EAL++WD P Sbjct: 567 NNCAFYTESLNQESVAKLKLQSALHDAIELNALYLVYQPKISFVTGDVVGFEALLRWDDP 626 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 +G +S + F+ +AE++ +I+ I ++L+R WR+Q I +N+A + + Sbjct: 627 AFGAVSPAVFIPLAEKIGLIQDIGRWVLKRACEQGQRWREQGVNFG-RIAVNVAGQQIQR 685 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + + + + +T S ++L +ES +M PE L +L +G+ L++DDFGT Sbjct: 686 SSFVDEVAETLKQTGLPASCLELEVTESYMMSEPELVSQDLAKLGLMGVELSIDDFGTGY 745 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL +P +K + S + G AI ++II M + ++A+ + + Sbjct: 746 SSLSYLKKLPIHKLKIDQSFIAGLPLDTHNTAIAKAIIAMGHALNLKVVAEGVETQAQAD 805 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD+ Q + P + L + Sbjct: 806 FLKDNLCDHAQGYFYSKPKLVEELTDFLHK 835 Score = 38.4 bits (88), Expect = 6.4, Method: Composition-based stats. Identities = 16/146 (10%), Positives = 37/146 (25%), Gaps = 6/146 (4%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDI----VWDWDIVRDRVTTTPDIATILGLASGS 444 + + + L++ D VW D + + Sbjct: 142 YRQFKRDQNSKRDVSHQASQLSLQAFIDCMKEHVWVKDTSGRYMMVNHSVELAWNRPREQ 201 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + +F + E + W+ P N Sbjct: 202 ILNFTDD--ELFEPRLAKHFIASDIESIRQGVQVSAGECEGLDIGDVDSWLETTKVPAIN 259 Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530 +G++ IGI+ +I K + + + Sbjct: 260 DDGELTGVIGISRNIASHKAAKDQLE 285 >gi|146293552|ref|YP_001183976.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella putrefaciens CN-32] gi|145565242|gb|ABP76177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens CN-32] Length = 1438 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 134/561 (23%), Positives = 263/561 (46%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 878 QKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 935 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 NF + + + + + GR E DN+ M + I + + G++ Y+G+ +D Sbjct: 936 E---NFSSQIRTMLKQQ-GRWANEVEAVRGDNRHFHMELTIDAIYDELGELSHYVGVFSD 991 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L+ ++ + + ++MV+D+D +K+ Sbjct: 992 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLV-----NKEIAHSLMVLDLDNFKR 1046 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L ++ R+ +L + RL G+ F I+L ++ A A + Sbjct: 1047 INDSLGHQVGDQLLKLVSIRVKSILPKNTSIYRLGGDEFAIVLDKGSDISASAAIAGRVI 1106 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 ++ M N+ E ++ + SIG + + +L+ A++AMYHAK GGN + + Sbjct: 1107 EAFKMSFNINEEQLVLGLSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNCYQFYSES 1166 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + ++ + Y P I L + G+EAL++ +HP G I E Sbjct: 1167 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKIDLKRGRVAGMEALVRLNHPVQGLIPPKE 1226 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ ++ + +++ Sbjct: 1227 FIPLAEESGLIVEIGEIVLRKACFAAQKWREQGLFNG-RVAVNLSSRQFALPDIQQRIES 1285 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T ++L +E V+ PE + +++ +L K+G+SL LDDFGT S LSYL Sbjct: 1286 ILRLTKLPACHLELEITEGTVIKQPEAAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1345 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1346 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1405 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + + LL+ Sbjct: 1406 IQGYIFSKAIKESEFTLLLQA 1426 Score = 114 bits (286), Expect = 7e-23, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 3/169 (1%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + A +L+V+ + +L + I ER L++ GSGD +WDWD Sbjct: 718 PWWLSTEAKSLYFILLVVSLLIVTKT-ILRRRETQRQIALSEERLKLSLWGSGDEMWDWD 776 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I + + + L N IH D++ R L+ + Sbjct: 777 IETGNIFRSNIWGS-LEFPRDGHRSGKNNEESNIHPMDQERVREALNKHFYGETDHFEAA 835 Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 +RV+ D + W++ R + + + + LR G +I++ K+ E + Sbjct: 836 YRVKGKDENWVWILDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLR 884 >gi|107101499|ref|ZP_01365417.1| hypothetical protein PaerPA_01002542 [Pseudomonas aeruginosa PACS2] Length = 844 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 136/619 (21%), Positives = 258/619 (41%), Gaps = 17/619 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 AW+ L L ++ L+ L +L V + +Q + Sbjct: 220 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 279 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ER + D +W+ D + + G + G + + + Sbjct: 280 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 337 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + L FR + Q + + N G Y G A DIT+ Sbjct: 338 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 393 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + ++ I + D LTG+PNR L +L + V+++D+D++K IND Sbjct: 394 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 451 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD VL ++ R+ + D++ARL G+ F ++ ++ L+I F + I Sbjct: 452 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 511 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 + V ASIG A +L+ A++AMY AK G N + + Sbjct: 512 NREVAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 571 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + + +L A++N E L Y P ++ I EALI+W+HP+ G I EF+ Sbjct: 572 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPRRGLIGPDEFIG 631 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++L SW + + + +N++ + ++ ++ + Sbjct: 632 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 686 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 R++L +E+V++ + + + + L+++G+ L +DDFGT S L YL PFD Sbjct: 687 LARLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 746 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 ++K + + + + +I+++II + + + A+ + E + L C +Q Sbjct: 747 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 806 Query: 938 SHVASPLGFNSILKLLKER 956 ++ PL + LL Sbjct: 807 FLLSRPLDAQGLRDLLARE 825 >gi|254240505|ref|ZP_04933827.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126193883|gb|EAZ57946.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 864 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 137/619 (22%), Positives = 257/619 (41%), Gaps = 17/619 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 AW+ L L ++ L+ L +L V + +Q + Sbjct: 240 LAWVSSRPGSTMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ER + D +W+ D + + G + G + + + Sbjct: 300 AGEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 357 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + L FR + Q + + N G Y G A DIT+ Sbjct: 358 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARIGKLSASAIRN--GVASGYRGTAADITD 413 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + ++ I + D LTG+PNR L +L + V+++D+D++K IND Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD VL ++ R+ + D++ARL G+ F ++ ++ L+I F + I Sbjct: 472 QYGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 531 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 I V ASIG A +L+ A++AMY AK G N + + Sbjct: 532 NREIAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + + +L A++N E L Y P ++ I EALI+W+HP G I EF+ Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPHRGLIGPDEFIG 651 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++L SW + + + +N++ + ++ ++ + Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 R++L +E+V++ + + + + L+++G+ L +DDFGT S L YL PFD Sbjct: 707 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 ++K + + + + +I+++II + + + A+ + E + L C +Q Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826 Query: 938 SHVASPLGFNSILKLLKER 956 ++ PL + LL Sbjct: 827 FLLSRPLDAQGLRDLLARE 845 >gi|296389513|ref|ZP_06878988.1| putative sensory box protein [Pseudomonas aeruginosa PAb1] Length = 844 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 136/619 (21%), Positives = 256/619 (41%), Gaps = 17/619 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 AW+ L L ++ L+ L +L V + +Q + Sbjct: 220 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 279 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ER + D +W+ D + + G + G + + + Sbjct: 280 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 337 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + L FR + Q + + N G Y G A DIT+ Sbjct: 338 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 393 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + ++ I + D LTG+PNR L +L + V+++D+D++K IND Sbjct: 394 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AERAGKSPVAVLMLDLDRFKPIND 451 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD VL ++ R+ + D++ARL G+ F ++ ++ L+ F + I Sbjct: 452 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLETEKFCSRLIDVI 511 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 I V ASIG A +L+ A++AMY AK G N + + Sbjct: 512 NREIAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 571 Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + + +L A++N E L Y P ++ I EALI+W+HP G I EF+ Sbjct: 572 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPHRGLIGPDEFIG 631 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I ++L SW + + + +N++ + ++ ++ + Sbjct: 632 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 686 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 R++L +E+V++ + + + + L+++G+ L +DDFGT S L YL PFD Sbjct: 687 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 746 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 ++K + + + + +I+++II + + + A+ + E + L C +Q Sbjct: 747 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 806 Query: 938 SHVASPLGFNSILKLLKER 956 ++ PL + LL Sbjct: 807 FLLSRPLDAQGLRDLLARE 825 >gi|308050336|ref|YP_003913902.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ferrimonas balearica DSM 9799] gi|307632526|gb|ADN76828.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ferrimonas balearica DSM 9799] Length = 1445 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 138/573 (24%), Positives = 262/573 (45%), Gaps = 27/573 (4%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 I ER +L A+ + ++ D + I G + Sbjct: 880 SIKEAEERLNLFARALRNISEGMFILDDDMRYLEVNEACLEITGFEKEHFVNETLKF--- 936 Query: 456 IHINDRDNFRTILDS---FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D + + ++GR E + ++ + + + + + S Y Sbjct: 937 ------DRYPQAYTDDIIRIVQQQGRWNGELELSRSNGRLIQIELTLDQIKESGTHNHFY 990 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 +G+ +DIT +K++ + D LTG+PNR L +++ + +++ D Sbjct: 991 VGVFSDITHRKQAESELRRLTNNDILTGLPNRSYLQISLDSLVRR-----QVPLCLLIFD 1045 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +KK+ND LG GD +L + R+ L L RL G+ F +I + Sbjct: 1046 LDNFKKVNDSLGHGAGDALLCHVANRVRNHLPEQASLYRLGGDEFAVIFDGDQAINYSTK 1105 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + + P L + E+ V +SIG ++ + +L+ A+LAMYHAK +GG Sbjct: 1106 LAQEILAAFSQPFQLEQGEVVVNSSIGIVTFPDDDVDRQALLRKADLAMYHAKGQGGQCY 1165 Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + F S ++ + + + A++++ + Y P + L ++I G+EAL++ +HP G Sbjct: 1166 QFFNESLNQAAMERLDTENLIRQALKDNHFEVYYQPKVDLPTKQIKGMEALVRLNHPTRG 1225 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 IS EF+ +AEE +I I +L++ WR Q + + +N++S+ + +L Sbjct: 1226 LISPGEFIPLAEETGLIVEIGEHVLKQACFAAEKWR-QMGLLKGRVAVNLSSQQFILPDL 1284 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 CE ++ ++ T ++L +E V+ PE++ + L ++GI L LDDFGT S L Sbjct: 1285 CERIERILKLTRLPADWLELEITEGTVIQQPEQAIATMRTLNQLGIHLALDDFGTGYSSL 1344 Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL P +T+K + S + T K + SII +A+N+E +++A+ + + + L Sbjct: 1345 SYLKRFPINTLKIDKSFVDDIAITAKDRMMAASIITIARNMELSVVAEGVEEKAQLSVLE 1404 Query: 929 RMGCDYIQDSHVASPLGFNSILKLL--KERFPL 959 + CD +Q + P+ L+ + + P+ Sbjct: 1405 ELRCDMVQGYLFSRPIPEMEFESLMFSQSKRPI 1437 Score = 118 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 5/173 (2%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + + A + I+ L+ V + L I ER L++ GSGD +WDWD Sbjct: 725 PWWLSRYAKLAYGAAILALV-LVVYREFLRRQRVQARIAQSEERLKLSLWGSGDEMWDWD 783 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + R+ + IL IH +D + +L + Sbjct: 784 MEAGRIYRSNIWG-ILEFPRDGKRSSGAE--SNIHPDDVERVNQLLSRHFSGDSDHFEAT 840 Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +RV++ + W++ R + + + R G DI+ K++ E + A Sbjct: 841 YRVKSKLGDWVWILDRAKIVERDDQDRPTRMTGTIKDISSIKEAEERLNLFAR 893 >gi|228951120|ref|ZP_04113236.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068313|ref|ZP_04201616.1| Sensory box/GGDEF [Bacillus cereus F65185] gi|229077940|ref|ZP_04210550.1| Sensory box/GGDEF [Bacillus cereus Rock4-2] gi|229177154|ref|ZP_04304543.1| Sensory box/GGDEF [Bacillus cereus 172560W] gi|228606335|gb|EEK63767.1| Sensory box/GGDEF [Bacillus cereus 172560W] gi|228705398|gb|EEL57774.1| Sensory box/GGDEF [Bacillus cereus Rock4-2] gi|228714774|gb|EEL66646.1| Sensory box/GGDEF [Bacillus cereus F65185] gi|228808530|gb|EEM55033.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 569 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + + Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L + G+EAL++ G Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVVLQPIIDLKTKRYSGIEALVRCMTED-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS +EF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 362 ISPNEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 420 FSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565 >gi|207722273|ref|YP_002252709.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] gi|206587450|emb|CAQ18032.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum MolK2] Length = 1178 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 144/584 (24%), Positives = 261/584 (44%), Gaps = 24/584 (4%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437 + F +Q + + + V + D V P + Sbjct: 604 VALFGTMQDITERRESDEQLRL----LRRVVESVPSGISVADALQPDLPLVYVNPGFERM 659 Query: 438 LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 G + + G +L + RT L ++ R D Sbjct: 660 TGYRAEEVLGRNCRFLHSSEPGQPALNEVRTALRDASE-----IRVLLRNFRKDGHPFLN 714 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ +S G + Y+GI +D+TEQ+ + + +A D LTG+PNR DR+ + Sbjct: 715 NFLLSPVRDSRGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAV 774 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +++A R V +I+ID++K +ND LG +GD+VL + R+ + D +AR SG+ Sbjct: 775 EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFSGD 833 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +++ + F A PI + E+ VTASIG A + + S +++ Sbjct: 834 VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGTDSETLVR 888 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AE+AMY+AK G N +E F S R+ ++ + A+E+ + L+Y P I Sbjct: 889 HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEHGQFRLLYQPQIDTRTG 948 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I GLEALI+W HP G + + F+ +AEE ++ I ++L A+ +W + Sbjct: 949 RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLSEAAQQRAAWHARGLGED 1008 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + I +N++ + + L + ++L +ES++M ER+ L +R+ Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+YL +P D +K + + + AI +++ +A N+ Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + L CD +Q + + PL +++ LL+ Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1172 Score = 92.7 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 6/165 (3%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 GG + L+ T + +A + + ER + D ++DWDI Sbjct: 333 QGGARDELSLLERTFNEMRMAIQRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392 Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + +LG + + ++H D + F L + + R + RV Sbjct: 393 ASLHRLLGSDALLTSGDEDGVSRTLTFQQFVHPEDMEVFGRGLRAALHSDRNAWHHVCRV 452 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 A + IR +G +R +G DI+++ + Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEADLR 497 Score = 77.3 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 2/141 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + +A + W WD++RD T + + + G+ G Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSTGMYVLTGMPPG-PPPSFAQ 546 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R V E + D + W++ R N +++ Sbjct: 547 QAQFFSADSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605 Query: 512 YIGIANDITEQKKSLEGILCN 532 G DITE+++S E + Sbjct: 606 LFGTMQDITERRESDEQLRLL 626 >gi|186473096|ref|YP_001860438.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] gi|184195428|gb|ACC73392.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] Length = 812 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 132/621 (21%), Positives = 263/621 (42%), Gaps = 19/621 (3%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-IGFTVIQHVLATGYFSQGIFSD 403 I G +V +V + T +L + S+ Sbjct: 180 ASFRGTCTTTAGQPKWWDSQLIPVKDHGGKVVAVVCASLDITNQTQLLQQLRAKSELMSE 239 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 E V S +++ T + + GL +W + DR Sbjct: 240 MEAHVQLVFFSYSANFEY-----FHYITAGSSNVFGLEPEEFMRNPNSWRELVVPEDRAA 294 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + + + ++R+R AD W+ P+ NGD+LR +GI D+T ++ Sbjct: 295 LQAEMTRIMTESTEG-RAQYRIRKADGSVRWVRSTGYPVIGDNGDVLRIVGITEDVTAEQ 353 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + + + A+ D+LTG+ NR + L + + S +M +D+D++K +ND L Sbjct: 354 ERIAELDRLAYTDSLTGLANRAALLREIESRCAASK-----PFGLMFVDLDRFKVLNDTL 408 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G D +L + I L +ARL G+ F +++ S + + A A+ ++ Sbjct: 409 GHLAADHLLRHVGGIIRRSLPDDAYIARLGGDEFAVLIGSVVDQPGLEAQAKALLGGLSE 468 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-FRS 702 +TASIG + + +L +A++AMY AK G N + + Sbjct: 469 NRLEGLAGAFITASIGISIYPEHGSGHDALLSSADVAMYAAKKTGRNGYQFAGKEAARTI 528 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ D+ A+ ++ +L + I + G EALI+W HP+ G IS +F+ + E Sbjct: 529 GDFELERDVPEALATNQFFLHFQTIHEPHSLAVHGAEALIRWQHPRRGRISPGDFIPLLE 588 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E ++ + +++L+ R + +WR + + +N++++ L ++ + + + + Sbjct: 589 ETGFVEDVGVWVLDNALRQLAAWRQA-GAMNLGVSVNVSARQLGSEQIVQQVDRALKRHG 647 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P ++++ +E+ +M NP+++R + L+++G + +DDFGT S L YL T+K Sbjct: 648 IPPGKLEIELTETALMKNPKQARTSIVELKRLGARIAIDDFGTGYSSLMYLADFEPHTLK 707 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + I+ II +A + +IA+ + + L R+ CDY+Q + Sbjct: 708 IDRHFTSKIEHDPTTQTIVEGIIDLAHKLGIQVIAEGVEQTAQLDILRRVNCDYVQGYLL 767 Query: 941 ASPLGFNSILKLLKERFPLVK 961 + P L+ P + Sbjct: 768 SRPQAPE---GLMTRAQPGAR 785 Score = 54.2 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 66/208 (31%), Gaps = 6/208 (2%) Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384 + G R V L I + ++ ++ A V I +G Sbjct: 28 LALLLGAWSSRRPVGLTGFAISVATGIGAGTASVALQMALRGSVSAPFSTQVAIGATVGA 87 Query: 385 TVIQHVLATGYFSQGIFSDGERQSLA-VLGSGDIVWDWDIVRDRVTTTPDIATIL-GLAS 442 + Q + + + + S D V D+ + AT++ + Sbjct: 88 IAMIATRRRFAAQQARHAAAMALASSFLDASRDCVKLLDLQGQMLRINDYGATLMEASSP 147 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G +WL + DRD T + + + Q W ++ P+ Sbjct: 148 VQLAG--ADWLGFWKGGDRDAATTAFRNALNGTPASFRGTC--TTTAGQPKWWDSQLIPV 203 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530 + G ++ + + DIT Q + L+ + Sbjct: 204 KDHGGKVVAVVCASLDITNQTQLLQQLR 231 >gi|120609841|ref|YP_969519.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120588305|gb|ABM31745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax citrulli AAC00-1] Length = 850 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 147/574 (25%), Positives = 263/574 (45%), Gaps = 22/574 (3%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-- 453 + R S D W+ D V + LG+A G R L Sbjct: 281 LQSELRLSEARFRSLCDLSSDWYWEQDAEHRFVHFNQGLNG-LGIAVDEAVGRTRWELGA 339 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 P + D + R+ E + AAD + W+ + P+ +++G L Y Sbjct: 340 PNLSAEDW----AEHRRVLAARQPFRDLELQRTAADGRVSWVSVSGIPVFSADGAFLGYR 395 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 G+ DITE+K+ I AF D LTG+PNR+ DRL + +A + ++ +D+ Sbjct: 396 GVGRDITERKRVDAEIERLAFFDPLTGLPNRRLLTDRLRRAIGTAAR-ERSHGALLFLDL 454 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSL 628 D +K +ND LG +GD +LV +R+ D ++R G+ F ++ Sbjct: 455 DNFKDLNDTLGHDMGDRLLVQAAQRLLACAGAGDTVSRFGGDEFVVLAEGLPGDMHRARA 514 Query: 629 KIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSE---MLKNAELAMYHA 684 A A + ++ P + T SIG A + + +LK+A+LAMY A Sbjct: 515 DAAVLANRITAALGRPYAVGGMGHHHSTPSIGLALFGGGTGDGAGVDDLLKHADLAMYQA 574 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F S ++ ++ +L LA+E+ EL L Y P++ D ++G EAL+ Sbjct: 575 KAAGRNTIRFFDPSMLQAVLARAALESELRLALESDELLLHYQPLVNG-DGSMLGAEALV 633 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G + EF+ AE+ +I A+ ++LER +++W A + + +N++ Sbjct: 634 RWRHPQRGLVMPGEFIPAAEQGGLIVALGQWVLERACAQLVAWSRSAATAQLVLAVNVSV 693 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + + + + + ++ P +K+ +ES++M + E + +LR G+ +DD Sbjct: 694 RQFRQPDFVDQLLQTLRRSGAQPRLLKIELTESLLMADVEDVIARMEQLRAHGVGFAIDD 753 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P D +K + S + + AI+R+I+ +A++++ ++A+ + Sbjct: 754 FGTGYSSLAYLKRLPLDQLKIDQSFVRDVLTDPNDAAIVRTILALARSLDLEVVAEGVET 813 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +K L R GC Q P + + L+ Sbjct: 814 TGQLKFLQRHGCKAFQGHLFGRPAPAAVLERALR 847 >gi|30018813|ref|NP_830444.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|296501388|ref|YP_003663088.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|29894355|gb|AAP07645.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|296322440|gb|ADH05368.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 567 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ G Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 360 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563 >gi|327481276|gb|AEA84586.1| sensory box protein [Pseudomonas stutzeri DSM 4166] Length = 829 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 139/566 (24%), Positives = 269/566 (47%), Gaps = 20/566 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ER + D +W+ D + I G G Sbjct: 273 RLASSRSALAESEERFRDVAEAASDWIWETDEQARLTFLSNRFRQITGHEPAQWLGRP-- 330 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L + I D + L++ L+ +R AAD + + R + +G +L Sbjct: 331 LLELL-ITDSAALQNWLEA---PHSAPLRSSYR--AADGCERYCRLAARTIQ-HDGKLLG 383 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y G A+D+TE+ ++ + + D LTG+PNR D L +L++ T++ I Sbjct: 384 YRGTASDVTEETRAQARVQYLSQHDALTGLPNRSRLRDYLEQ--NLASLRSGSTLTLLYI 441 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND LG A GD+VL+ + R+ E + D++ARL G+ F ++L I Sbjct: 442 DLDRFKPVNDTLGHAAGDEVLIGVASRLRERTRDGDLVARLGGDEFVVVLHRMGEDNDID 501 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + +++ P +++I++ ASIG A + ++E+L+ A++A+Y AK G Sbjct: 502 RLCNRIIDALSAPFIYEDQQISIGASIGVALAPTDANQANELLRCADIALYQAKDAGRGT 561 Query: 692 VESFRVSSFRSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 ++ + ++ + L A+ +L + Y P + I+G EAL++WDHP+ Sbjct: 562 WRAYGREMDQRLHERLRREEELRVAITEQQLEVHYQPRYQSQGLYIIGAEALVRWDHPQR 621 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + +F+ +AEE +I + ++L + + W + +N++ L D+ Sbjct: 622 GMLLPEQFIPLAEETGLIIPLGRWVLRQACQQAARWP-----GDTVVSVNLSPLQLHDDR 676 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E + ++ + +R++L +ES ++ + + LL R++ +G+ L +DDFGT S Sbjct: 677 LLEEITQALADNGLAGNRLELEVTESALLRETQNTLELLKRIKALGVRLAVDDFGTGYSS 736 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+ L + PFD +K + S + G + + +I+R++I + + + + A+ + E ++ L Sbjct: 737 LTTLRHYPFDVIKIDNSFVAGIGQSIEDHSIVRALIELGRGLRMRVTAEGVETEEQLRLL 796 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 T GC +Q H++ PL + +L Sbjct: 797 TDDGCTEVQGFHMSHPLPAQDLWTML 822 >gi|300693249|ref|YP_003749222.1| signal transduction eal-ggdef domains transmembrane protein [Ralstonia solanacearum PSI07] gi|299075286|emb|CBJ34576.1| putative signal transduction eal-ggdef domains transmembrane protein [Ralstonia solanacearum PSI07] Length = 1178 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 142/584 (24%), Positives = 258/584 (44%), Gaps = 24/584 (4%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437 + F +Q + + + V + D V P + Sbjct: 604 VALFGTMQDITERRESDEQLRL----LRRVVESVPSGITVADALQPDLPLVYVNPGFERM 659 Query: 438 LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 G + + G +L + R L ++ R D Sbjct: 660 TGYRAEEVLGRNCRFLHSSEPGQPALNEVRAALRDASE-----IRVLLRNFRKDGHSFLN 714 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ +S G + Y+GI +D+TEQ+ + + +A D LTG+PNR DR+ + Sbjct: 715 NFLLSPVRDSQGAVTHYVGIQDDVTEQEMTRARLAQHATADPLTGLPNRTLLADRVQQAV 774 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +++A R V +I+ID++K +ND LG +GD+VL + R+ + D +AR G+ Sbjct: 775 EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRVAERLRDAADTVDTVARFGGD 833 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +++ + F A PI + E+ VTASIG A + + S +++ Sbjct: 834 VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGSNSETLVR 888 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AE+AMY+AK G N +E F S R+ ++ + A+E + L+Y P I Sbjct: 889 HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEQGQFRLLYQPQIDSRTG 948 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I GLEALI+W HP G + + F+ +AEE ++ I ++L A+ +W + Sbjct: 949 RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLAEAAQQRAAWHARGLGED 1008 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + I +N++ + + L + ++L +ES++M ER+ L +R+ Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+YL +P D +K + + + AI +++ +A N+ Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + L CD +Q + + PL +++ LL+ Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1172 Score = 93.1 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 6/165 (3%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 GG + L+ T + +A + + ER + D ++DWDI Sbjct: 333 QGGARDELSLLERTFNEMRMAILRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392 Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + +LG + + ++H D + F L + + R + RV Sbjct: 393 ASLHRLLGSDALLASGDEDGVSRTLTFQQFVHPEDMEAFGWGLRAALHSDRNAWHHVCRV 452 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 A + IR +G +R +G DI+++ + Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEADLR 497 Score = 75.8 bits (185), Expect = 4e-11, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 2/141 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + +A + W WD++RD T + + + G+ G Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSSGMYVLTGVPPG-PPPSFAQ 546 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R V E + D + W++ R N +++ Sbjct: 547 QAQFFTGDSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605 Query: 512 YIGIANDITEQKKSLEGILCN 532 G DITE+++S E + Sbjct: 606 LFGTMQDITERRESDEQLRLL 626 >gi|319426852|gb|ADV54926.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens 200] Length = 1438 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 134/561 (23%), Positives = 263/561 (46%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 878 QKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 935 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 NF + + + + + GR E DN+ M + I + + G++ Y+G+ +D Sbjct: 936 E---NFSSQIRTMLKQQ-GRWANEVEAVRGDNRHFHMELTIDAIYDELGELSHYVGVFSD 991 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L+ ++ + + ++MV+D+D +K+ Sbjct: 992 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLV-----NKEIAHSLMVLDLDNFKR 1046 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L ++ R+ +L + RL G+ F I+L ++ A A + Sbjct: 1047 INDSLGHQVGDQLLKLVSIRVKSILPKNTSIYRLGGDEFAIVLDKGSDISASAAIAGRVI 1106 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 ++ M N+ E ++ + SIG + + +L+ A++AMYHAK GGN + + Sbjct: 1107 EAFKMSFNINEEQLVLGLSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNCYQFYSES 1166 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + ++ + Y P I L + G+EAL++ +HP G I E Sbjct: 1167 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKIDLKRGRVAGMEALVRLNHPVQGLIPPKE 1226 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ ++ + +++ Sbjct: 1227 FIPLAEESGLIVEIGEIVLRKACFAAQKWREQGLFNG-RVAVNLSSRQFALPDIQQRIES 1285 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T ++L +E V+ PE + +++ +L K+G+SL LDDFGT S LSYL Sbjct: 1286 ILRLTKLPACHLELEITEGTVIKQPEAAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1345 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1346 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1405 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + + LL+ Sbjct: 1406 IQGYIFSKAIKESEFTLLLQA 1426 Score = 114 bits (286), Expect = 7e-23, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 3/169 (1%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + A +L+V+ + +L + I ER L++ GSGD +WDWD Sbjct: 718 PWWLSTEAKSLYFILLVVSLLIVTKT-ILRRRETQRQIALSEERLKLSLWGSGDEMWDWD 776 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I + + + L N IH D++ R L+ + Sbjct: 777 IETGNIFRSNIWGS-LEFPRDGHRSGKNNEESNIHPMDQERVREALNKHFYGETDHFEAA 835 Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 +RV+ D + W++ R + + + + LR G +I++ K+ E + Sbjct: 836 YRVKGKDENWVWILDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLR 884 >gi|163749905|ref|ZP_02157150.1| sensory box protein [Shewanella benthica KT99] gi|161330419|gb|EDQ01398.1| sensory box protein [Shewanella benthica KT99] Length = 1066 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 143/583 (24%), Positives = 269/583 (46%), Gaps = 20/583 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + Q + + + LA S + + D P I G + Sbjct: 485 IAQLSHSLNLMLEERSKANRQLKLAAAVFESSSEGILVTDADNHIELVNPAFTQITGYSL 544 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + L + R D G+ Q E + + Q + + I Sbjct: 545 EDVKGRSPSVLNS-----QQQTRHFYDEMWQSLQTEGKWQGEIWNKRKNGQVYPEYLAIT 599 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + G I+++IG+ DI+ +K+ + I D LT +PNR + ++ + ++ Sbjct: 600 VVKDDAGQIIQHIGLFLDISNRKQYEQNIWYKTHYDLLTKLPNRSLYTIKVQQEMTMAQE 659 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ + ++ I++D++K ND+ G VG+ +L + R+ L+ D +ARL G+ F II Sbjct: 660 NNR-QVAILFINLDRFKYTNDIYGHEVGNKLLRQVASRLKSLVNKHDFVARLGGDEFIII 718 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L ++ A + +A P + ++ ++ASIG + + + + + +NAE A Sbjct: 719 LPRIRRQHQVQAIADKVNARLASPFGVDGDDLMISASIGISLFPENGSSEELLTRNAETA 778 Query: 681 MYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK+ G N+ + R+ +++ L AV E L Y PI+ L D I G+ Sbjct: 779 MYQAKNDGRNNYRYYSSEMNEHILERIQLEQRLRQAVIRQEFCLHYQPIVNLDDRTITGV 838 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W PK+G I+ F+ IAEE +I+ I ++L++ D+ W I + I Sbjct: 839 EALIRWQDPKFGMIAPDMFIPIAEETGLIEPIGEWVLQQALTDLAHWHRLGF--KISMAI 896 Query: 799 NIASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 N++ + LL ++AL+ K P + + +ES++M + E+ +L +R +G Sbjct: 897 NVSGRQLLGQNKTSFKCLLKALLKKNDIEPQYLHIEITESMLMDDTEQCMTVLESIRSLG 956 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 + + +DDFGT S LSYL P +K + S + +E ++++I+ M +++E + Sbjct: 957 LDIYIDDFGTGYSSLSYLKRFPIAVIKIDKSFIDNMLESESDAKLIKAIVMMGQSLELKL 1016 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +A+ I + L +GCD+ Q + PL + L ++ Sbjct: 1017 VAEGIETHAQWQMLQALGCDFGQGYLFSHPLPAQELASFLHQQ 1059 >gi|296285048|ref|ZP_06863046.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum JL354] Length = 881 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 150/683 (21%), Positives = 281/683 (41%), Gaps = 22/683 (3%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343 + + L + L T + + Sbjct: 95 RVRRLSVTTAFGLIPHLLVGYAYAEWMFHGGLPLGFGIATLILAGSMAAVFLAGRPFPML 154 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 ++ I IW +I ++ L +L+ + I ++ + Q Sbjct: 155 FVKIGIWLPIAVHSIAYNDHMAVVALPL---AILVAVGIALFQERYDRRSEEERQAEERS 211 Query: 404 GERQSLAV---LGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 R + +G W+ D V + A G + G + + + Sbjct: 212 RNRSIDILRDYEATGQGWFWETDKHGRIVYISEVFAERYGFDHEDLLGKVFTSVFEVDPG 271 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DRD + + R RA D W + RP+ +S + + G Sbjct: 272 DRD-AERTIKFHFTAHSPFHELPVRGEGRAGDGT-VWWSVNGRPIFDSFENFCGFRGSGT 329 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+TE+++S E A D+LTG+ NR + L+ +L + +++++D+D++K Sbjct: 330 DLTERRRSAEHASRLALYDSLTGLANRHALSQALSKLLTHRNPAQRV-CSILMLDLDRFK 388 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND G GD +L + RR+ +++ + R+ G+ F +++ ++ + Sbjct: 389 HVNDTFGHPTGDALLNQVARRLEKVVGDLGTVGRIGGDEFQVLIPKRCEKARLEQLGNDI 448 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 S++ P ++ + AS+G A TS ++++A+LA+Y AK G F Sbjct: 449 IHSLSQPYSIDGNRAVIGASVGIAIAPEHGGTSERLVRSADLALYAAKDAGRGRYRVFSD 508 Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 +R ++E+L LA++ L L Y P++ EEI G EAL++W+HPK G IS Sbjct: 509 DLHVAARERNQLEEELRLAIDTGGLQLHYQPVVNTATEEISGFEALMRWNHPKQGWISPE 568 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AE+ +I A+ + + + D+ W + +N++ D L + Sbjct: 569 KFVPVAEDAGLIVAMGEWAIRQACSDLARWPKS-----VRCAVNVSPLQFADPALPGVIA 623 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 I+K PSR++L +ESV + + E + L+ +G+ L LDDFGT S L YL Sbjct: 624 DAIAKAGICPSRLELEITESVFLDDSEGTDATFAALKAVGVRLALDDFGTGYSSLGYLKN 683 Query: 876 IPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFD +K + + G+T + AI+ +I +A + A+ + +++ + GC Sbjct: 684 APFDKIKIDQGFVRGATMPGSRNGAIIAAISSLANALGMDTTAEGVETLDELELIRMHGC 743 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 +IQ + PL L+E Sbjct: 744 SHIQGYIYSKPLSTAEADARLEE 766 >gi|65318053|ref|ZP_00391012.1| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Bacillus anthracis str. A2012] Length = 569 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 258/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I N G+ ++I I NDI+ Sbjct: 71 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ D ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L ++ G+EAL++ + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ IAEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 362 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565 >gi|254457458|ref|ZP_05070886.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] gi|207086250|gb|EDZ63534.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] Length = 802 Score = 512 bits (1320), Expect = e-142, Method: Composition-based stats. Identities = 144/546 (26%), Positives = 268/546 (49%), Gaps = 12/546 (2%) Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVG 473 D V D + + I G + + G + + H D ++ + D Sbjct: 263 SDGVVITDANQSIIKINESFTKITGYTNEELIGMTPKAFSSGWH--DEAFYKKMWDDIKQ 320 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 G+ E R ++ + + I + N +G + YI I NDI+++K+ + I A Sbjct: 321 N--GQWSGEIIDRKKSSERYIAEMNIIALHNDDGILTNYISITNDISKKKEQEKLIHNLA 378 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 + D+LT +PNR F +R+ + + S D + ++ ID+D +K +ND LG +GD L+ Sbjct: 379 YFDSLTDLPNRVLFEERVVSRIPFSKRHDK-KMALLFIDMDNFKNVNDTLGHFMGDMFLI 437 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 ++ I ++ D LARL G+ F ++L N+ + I A + + P+ + +E+ Sbjct: 438 EVSNIIKNSIREQDTLARLGGDEFTVLLEDINSIMDIVPIAEKIIAAFNNPVLIESKELY 497 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDL 711 S+G + + + +E+ K A+ AMY K G N+ + F+ S + + L Sbjct: 498 TGISMGISLYPDDGKSYNELFKAADTAMYQVKASGKNNFQFFKQSMNEKITERLFLENSL 557 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+ N+EL+LVY P I L + + G+EALI+W HP+ G I +F+ I+EE I I Sbjct: 558 RNAIGNNELFLVYQPKINLETKRVYGMEALIRWRHPEIGLIRPDKFISISEETGQIYNIG 617 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 L++ ++ D + + ++ + + IN++SK L + + + + ++++ S ++L Sbjct: 618 LWVAKQAIIDTKALHEAGHI--LTVSINVSSKQLENEKFIDDICCVVNEIGIDKSYVELE 675 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +ES +M N +++ +L L G L++DDFGT S LSYL +P T+K + S + Sbjct: 676 ITESHIMSNIDKALKILNELSDKGFKLSIDDFGTGYSSLSYLKKLPAQTIKIDRSFVLDI 735 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 E +I+ +II MAK + +IA+ + I L + C+ +Q + P+ + Sbjct: 736 YKDEDDRSIVATIIAMAKALGKDVIAEGSETQEHIDTLKYLHCNKVQGYFFSKPIEIDEF 795 Query: 950 LKLLKE 955 + + Sbjct: 796 KEFVDN 801 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 2/124 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A + W+ ++V + + + ++ I GL +L +IH +D + + Sbjct: 134 AQELANIGHWELNLVTNDLFWSDEVYRIFGLKPQEFGATYEAFLEHIHPDDVELVNSSYS 193 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + R G R+ + + ++ R +++G++LR IG +DIT+QK + + Sbjct: 194 DSITNRCG-YHVTHRIVRKNGEVGFVEERCEHEFDNDGNVLRSIGTVHDITKQKIA-QNE 251 Query: 530 LCNA 533 L A Sbjct: 252 LMLA 255 Score = 43.0 bits (100), Expect = 0.27, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 5/124 (4%) Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 L + ++ D+ + + A ++G + ++ G + F+ Sbjct: 9 LILNSLEQNIFVKDLNSNYLFVNSTYAKLVGKEATAIIGKNDLDFF---PEEIA-FKYQN 64 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 D + + ++ D ++ + +P+ NG++ +GI DITE + E Sbjct: 65 DDSLVIKNKQIIDTVESILIDGKYKTIRTVKKPLYF-NGEVSAVLGIFWDITEFNEEKEH 123 Query: 529 ILCN 532 Sbjct: 124 FKKL 127 >gi|228937866|ref|ZP_04100494.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970747|ref|ZP_04131387.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977322|ref|ZP_04137717.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228782299|gb|EEM30482.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228788872|gb|EEM36811.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821772|gb|EEM67772.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 569 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ G Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565 >gi|91977729|ref|YP_570388.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91684185|gb|ABE40487.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 823 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 140/562 (24%), Positives = 258/562 (45%), Gaps = 21/562 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + E L G+ +W +D ++ G + +R L I Sbjct: 265 SLKKREESFRLLFDGNPMPMWVFDATTTEFLSVNDAAVQHYGYDRDAF---LRMTLREIW 321 Query: 458 INDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 D + + Q +R AD ++ R + +G ++ + Sbjct: 322 PRDE---WASHSHALLHVGDSYQSGGNWRHIKADGSEIQVLTFGRRVVF-DGR-DGFLVV 376 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DITE++K+ I A D LT +PNR + +RL L+ R V+ ID+D Sbjct: 377 VVDITERRKAEAKIAHMAHHDGLTNLPNRALYQERLQQALEQ-GRAGGARVAVLCIDLDL 435 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G +GD +L + R+ + D++AR G+ F I+L + + +DFA Sbjct: 436 FKNVNDSFGHPMGDRLLRCVAERLRAQVGGQDLVARFGGDEFAIVLAQVTSPNEASDFAA 495 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + ++ P ++ E+ + ASIG A +L+NA++A+Y AK GG F Sbjct: 496 RLIEIVSAPYDMDGLEVVIGASIGIALAPGDGEDCDALLRNADMALYRAKAHGGGCHHFF 555 Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + R ++ D+ A E L Y P+I L ++ I G E+L++W H + G IS Sbjct: 556 EKEMDRQAQIRRDMELDMRHAFARGEFELHYQPLIDLAEDRISGFESLLRWRHIERGMIS 615 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 ++F+ IAE++ +I + ++L + + W D I + +N++ L + Sbjct: 616 PADFIPIAEDIGLIVGLGEWVLRQACIEAARWPD-----DIKLAVNLSPVQFRSRNLVQV 670 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + + ++++ +P R++L +ES+ + + E + L +LR +G+ +++DDFGT S LSYL Sbjct: 671 VISALAQSGLAPRRVELEITESLFLADSEANLATLHQLRSLGVRISMDDFGTGYSSLSYL 730 Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PFD +K + S + T +AI+R+I + +++ T +A+ + ++ L G Sbjct: 731 RSFPFDKIKIDRSFVKDLTERPDCLAIVRAISGLGRSLNITTLAEGVETIDQLQALRGEG 790 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C +Q + I LL Sbjct: 791 CHEVQGFLFSPARPACEIDGLL 812 >gi|325273046|ref|ZP_08139356.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] gi|324101819|gb|EGB99355.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] Length = 1247 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 148/580 (25%), Positives = 270/580 (46%), Gaps = 12/580 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + G + + + + + + + V DI + + I G Sbjct: 658 IAGIDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717 Query: 441 AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + ++ R H D + + G Q E + + + + I Sbjct: 718 SEIEALGQTPRLLASGQH--DSAFYAAMWHQLTAE--GHWQGEIFNKRKSGELYPSWLTI 773 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + N+ +I ++ + DI+ K + + A D LTG+PNR F +RL L + Sbjct: 774 SAVRNTEREITHFVAVFADISSLKHAQAKLDYQAHHDPLTGLPNRALFENRLQAALACAQ 833 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + + V+ +D+D++K IND LG VGD +L + +R+ E ++ D +ARL G+ F I Sbjct: 834 VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + A + P E E +ASIG + + + +++NA+ Sbjct: 893 LLPGLHKPSDASSIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGSDVATLIRNADA 952 Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY +K +G N VE++ + S+R+ ++ +L AVE +E+ L + P + L + +VG Sbjct: 953 AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVG 1012 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EALI+W HP +G + F+ +AEE I + ++LE+ R + W+ + Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMHRWKRDYEAFG-PLS 1071 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN+A L + L + ++ L+ ++L +E+ +M E + ++L +L+K+G+ Sbjct: 1072 INLAGAQLRHHGLAKRIEQLLRTYGLKAGDLQLEITENFIMSQAEEALVVLHQLKKLGVQ 1131 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L +DDFGT S LSYL +P D +K + S + G AI R+II + ++++ TIIA Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954 + + + + L GC+ IQ V+ PL L+ Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFAASFLR 1231 Score = 78.8 bits (193), Expect = 5e-12, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 5/168 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + + G++ IVI I + + Q + S V I W+ Sbjct: 267 LLVYGLPTVLFLMGVLAIVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326 Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D +P +LG W +H D + DS R Sbjct: 327 ADANDYTYSYVSPHAEGLLGYPLTDWL-KPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++RV AD Q W+ + + +G G+ DI+E K++ + Sbjct: 385 SLDYRVIRADGQALWVRNIVSMI--EHGHHPVMRGLMIDISETKRTED 430 Score = 56.1 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 51/171 (29%), Gaps = 8/171 (4%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424 L ++ + Q + + E+ + A S D + Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581 Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + G ++ + ++ +N+R L+ + Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNR----DGFVRDFTC 637 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +R +D Q + RP+ + I + IA DITE+ E + A Sbjct: 638 HIRRSDGQIRLCELSARPLPIAG--IDCMLTIARDITERHLMQEKLQLAAT 686 >gi|228957047|ref|ZP_04118822.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042486|ref|ZP_04190231.1| Sensory box/GGDEF [Bacillus cereus AH676] gi|229108234|ref|ZP_04237856.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] gi|229126059|ref|ZP_04255081.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] gi|229143352|ref|ZP_04271783.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|229148966|ref|ZP_04277211.1| Sensory box/GGDEF [Bacillus cereus m1550] gi|228634506|gb|EEK91090.1| Sensory box/GGDEF [Bacillus cereus m1550] gi|228640159|gb|EEK96558.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|228657381|gb|EEL13197.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] gi|228675250|gb|EEL30472.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] gi|228726839|gb|EEL78051.1| Sensory box/GGDEF [Bacillus cereus AH676] gi|228802678|gb|EEM49520.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 569 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ G Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565 >gi|170727362|ref|YP_001761388.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908] gi|169812709|gb|ACA87293.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella woodyi ATCC 51908] Length = 1441 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 130/563 (23%), Positives = 262/563 (46%), Gaps = 19/563 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + E+ L A+ + ++ D V + + G + + ++ Sbjct: 878 NAEEQLRLFERAIANISEGMFILDNNFIFVEVNEACCELSLIPKEQFIGSL--FKFNLYP 935 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + ++ + S + +++G + D M + + + + G + Y+G+ +D Sbjct: 936 D---SYSEQIRSIL-HQQGSWSNDVESAKGDGTSFLMELTVDAIYDELGQLSHYVGVFSD 991 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K E + D LT +PNR S + L ++ + T+MV+D+D +KK Sbjct: 992 ISRRKLQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKR-----DTHHTLMVLDLDNFKK 1046 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G +GD++L+ + +RI + + + RL G+ F I++ + + A A + Sbjct: 1047 INDSMGHQIGDELLIKVAKRIEAAVPYHTSIYRLGGDEFAILVDNNPDIGSSAVIANNVI 1106 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + A P L ++ V SIG + +L+ A++AMYHAK GGN + + S Sbjct: 1107 DAFASPFELTSEKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSGGGNRYQFYSES 1166 Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ + + + + + Y P I L + G+EAL++ +HP+ G I SE Sbjct: 1167 INRNAIRQLEVENLIREGLRDDLFEVYYQPKIALKTGRMAGMEALVRLNHPEHGLIPPSE 1226 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I ++ + WR + +N++S +L + +++ Sbjct: 1227 FIPLAEENGLIVDIGDLVMRKACFATQKWRSLGLF-DGRVAVNLSSYQFALPDLQQRIES 1285 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE++ ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1286 ILRLTQLPAANLELEITEGTVIKQPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1345 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1346 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEDASQLSILKALKCEE 1405 Query: 935 IQDSHVASPLGFNSILKLLKERF 957 IQ + + +LL++ F Sbjct: 1406 IQGFLFSKAVTETQFSELLEKNF 1428 Score = 120 bits (300), Expect = 2e-24, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 2/155 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 +I ++I ++Q +L + I ER L++ GSGD +WDWDI ++ + + Sbjct: 731 IITLIISAVIVQGILRRREVQKKIAKSEERLKLSLWGSGDEMWDWDIETGQIYRSNIWGS 790 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L + IH D+D L+S + +RV+ +++ W++ Sbjct: 791 -LEFPKDGQRSGDADEESNIHPMDQDRVTKALNSHFDGNSDHFEAAYRVKGKSDEWVWIL 849 Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 R + + + + LR G +I K + E + Sbjct: 850 DRAKIVERDEKDNPLRMTGTIKNINNFKNAEEQLR 884 >gi|152986676|ref|YP_001345771.1| hypothetical protein PSPA7_0376 [Pseudomonas aeruginosa PA7] gi|150961834|gb|ABR83859.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 760 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 164/752 (21%), Positives = 316/752 (42%), Gaps = 22/752 (2%) Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFG---FLSKLVNLPSGELLIWRACSEIALSSSLIIF 268 R S+ A+AW L + + + + L + A + + F Sbjct: 7 ALRLSLAYLAVAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAATGLLLYLYLVRQF 66 Query: 269 LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM--VTASIARITLASIVLYYTYFI 326 ++ H + + A L+ V+ A + + Sbjct: 67 RRKAQAYDELHGSEQRLNRALEAVRDGLWDWDLVTGRMFVSPGYAALVGLTPEELGDPIE 126 Query: 327 IYHGMKGYERAVLLIPAW---ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 + E ++ A + + + + + + L +G Sbjct: 127 TWKKRLHPEEFATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDA---LG 183 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + +A Q + D RQ+ AV + + V D V P I G S Sbjct: 184 KPLHYTGVARDITLQRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRS 243 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G L D+ ++ + + E R + + + IR + Sbjct: 244 EDVLGKTPAILRS-GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRAV 300 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 N G + Y+G+ +D++ K+S + A D+LTG+PNR R+ L+ D Sbjct: 301 RNDQGQLTHYVGVFSDLSSIKRSENELDFLAHHDSLTGLPNRVLLRQRIEQALEDGK-DR 359 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + +++ID+D +K IND LG GD +L +++R+ L +L+RL G+ F I++ Sbjct: 360 AVAGALLLIDLDHFKHINDSLGHTTGDMLLKEVSKRLQHQLGERCLLSRLGGDEFAILVE 419 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 ++ + +A + + P ++ + I ++AS+G + + ++++A+ A++ Sbjct: 420 ND-DPEAVARLSQRILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALF 478 Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N + ++ V ++ L A+++ EL + Y P+ L IVG+E+ Sbjct: 479 QAKDSGRNAYAFYTRVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVES 538 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G + EF+ +AEE +I A++ ++L+R R + W+D+ FI +N+ Sbjct: 539 LVRWQHPERGLVPPGEFVPVAEECGLIAALDNWVLKRACRQMREWQDRGVGLE-FIAVNV 597 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +S+ L E + + ++ P ++L +ES VM + E+S LL RLR +G++L + Sbjct: 598 SSRLFNRGGLEERIANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAI 657 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L L +P +K + + G AI R+II +A+++ ++A+ I Sbjct: 658 DDFGTGYSSLMRLKRLPVHKLKIDQGFVAGLPGAVDDAAIARAIIALAQSMGLRVVAEGI 717 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + L GCD+ Q P ++ Sbjct: 718 EHQDQALFLREHGCDFGQGYWYGRPQPPETLR 749 >gi|103487777|ref|YP_617338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] gi|98977854|gb|ABF54005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] Length = 784 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 167/693 (24%), Positives = 313/693 (45%), Gaps = 38/693 (5%) Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + + F + P V ++ T+A +++ + + Sbjct: 105 YRMCNRHALYSALLWGLPFWLQGLAPGVDHILSMWTIAVLMMLTLAIVAHS--------- 155 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 +P +FI + L A L A+ +++ Q + + + Sbjct: 156 --VPLACALFIMPVSLSAAAALGLAGAPEIAAVTLVAGILLSAFCVRFAQIHIRSRRAEE 213 Query: 399 GIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI----- 449 + E SL + S D +W D R V +P +A LG + + G Sbjct: 214 TLHEKSETVSLLLREFEETSADWLWQTDSNRRLVHVSPRLAYALGGTAEGLEGIPLLQAL 273 Query: 450 --RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 W + + + RR + D + W + P + +G Sbjct: 274 SGDAWETGLFPKSLHDMAERMK-----RRESFSNLIVPVSIDGRPRWWELSASPRLDESG 328 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 L + G+ +D+TEQ+ + E I A DNLTG+PNR S + L L + R Sbjct: 329 RFLGFRGVGSDVTEQRATAEQIARMARFDNLTGLPNRLSLNEDLARALTRAIEA-KSRCA 387 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 +++ID+D++K +ND LG VGD +L + R+ L++ RL G+ F ++L + ++ Sbjct: 388 LLMIDLDRFKAVNDTLGHPVGDKLLAQVAARLKGLMERGMTCGRLGGDEFAVVLHNLSSP 447 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 D A + +I+ P + ++ V AS+G+A + T + +NA+LA+Y +K R Sbjct: 448 AVAEDLAQRIIATISRPYVVDNHQLFVGASVGYAIGPTDGATVETLTRNADLALYKSKDR 507 Query: 688 GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GGN V ++ + +R +++++L A+E E L Y P++ D + G EALI+W Sbjct: 508 GGNVVAAYVASLHAQAEERRVMEQELRGALERGEFELYYQPVVTAADGTLNGFEALIRWT 567 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 + K GN+S F+ IAE+ +I I ++L + + W + + +N+++ L Sbjct: 568 NHKLGNVSPGRFIPIAEDARLISPIGEWVLRTACHEAMKWPS-----NLKVAVNVSADQL 622 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++++ SP R+++ +ESV + + + LL +L +GI L+LDDFGT Sbjct: 623 TDPSFASVVVSALAQSGLSPQRLEIEVTESVFLRDGGGAAQLLDQLIGLGIRLSLDDFGT 682 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEI 922 S L YL F T+K + S + G+ + + IAI+R+++ +A ++ + A+ E+ Sbjct: 683 GYSSLGYLRKTQFSTIKVDRSFVVGAAKGSIESIAIIRAVVALADSLGMSTTAEGAETEL 742 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +++ L GC IQ + P+ + +L L + Sbjct: 743 EVETLRSFGCSNIQGYYYGRPMPASDVLTLFRR 775 >gi|256392528|ref|YP_003114092.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Catenulispora acidiphila DSM 44928] gi|256358754|gb|ACU72251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Catenulispora acidiphila DSM 44928] Length = 828 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 145/608 (23%), Positives = 263/608 (43%), Gaps = 44/608 (7%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + G + S D++ +D P I G+ Sbjct: 214 ARKISERELKARTAELDRVGRELKTLLDTSPDLMARFDRDLRCTYANPAAREITGV---E 270 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 M G Y + + L + R EF V Q+ ++ R P + Sbjct: 271 MLGRTSRQRGY-SEDFLGVWEESLRQVLETGRDT-DREFSV-TVGGQYRFLHTRFVPELD 327 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 ++G++ + ++ D+T++++ E + A +D LTG+ NR + R++ ++ S D+ Sbjct: 328 ADGEVTSVLSVSRDLTDRRRIEEALAEQAVRDPLTGLANRTLLVSRISEAIEYSGGADD- 386 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R V+ +D+D++K +ND LG A GD++L ++ R+ + ++ D++AR G+ F ++ + Sbjct: 387 RLAVLFLDLDRFKLVNDSLGHAAGDELLAAVADRLRKAVRRGDLVARFGGDEFVVLCENV 446 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A A + + P + + + V SIG A T E+L++A+ AMY A Sbjct: 447 AGHAEAASIAQRVIDCLIRPFDCAGKPMHVRTSIGIALAHGPDTTVDELLRDADAAMYQA 506 Query: 685 KH----RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 K GG R+ +++DL AVE E LVY PI+ L D + G EA Sbjct: 507 KSDGAVAGGYRFFEPATHERAVHRMNLEQDLRQAVERGEFTLVYQPIVALDDGRVTGAEA 566 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF----- 795 LI+W HP+ G ++ + F+ +AEE +I I ++L+ R + +W Sbjct: 567 LIRWRHPERGLLTPAAFLEVAEETQLIVPIGRWVLDEACRQLAAWNAMLPPGSEGEAEGG 626 Query: 796 -------------------------ILINIASKDL-LDNELCEGMQALISKTLYSPSRIK 829 + +N++S+ L D +L + I++ RI Sbjct: 627 AEVGAGVAAGVGAGVAAGAGSRLPLLAVNLSSRQLSHDGDLVTQVAKAIARHGVPAGRIC 686 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +E+ V +R L G+ + LDD+GT S L +L P DT+K + ++ Sbjct: 687 LEVTETAVHEASLTARSALAAFSAAGMKIALDDYGTGYSSLGHLRDNPVDTLKIDRVFIS 746 Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 G T AI+ ++I +A + ++A+ + + L +GCD+ Q A PL Sbjct: 747 GLTRNRGDDAIVVAVITLAHALGMRVVAEGVETPEQRERLRELGCDFAQGHLFAMPLCAE 806 Query: 948 SILKLLKE 955 +LL+ Sbjct: 807 EFGELLRS 814 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 3/114 (2%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + D+++ D + + A G SM G Y + Sbjct: 105 LSACADMIFFKDRESRFLRVSDSAAEFSGTDPASMIGK--TVRDYFTPEHAAAAFATERA 162 Query: 471 FVGYRRGRLQYEF-RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + R +E +R + + +P+ + +G I+ GI+ DIT +K Sbjct: 163 IMSTGRALTDFEEPHLRPGTPEEETLSASKQPLRDFDGRIIGTFGISRDITARK 216 >gi|83594889|ref|YP_428641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83577803|gb|ABC24354.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 951 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 134/620 (21%), Positives = 274/620 (44%), Gaps = 12/620 (1%) Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 I + +R + + I VI+ + + + R Sbjct: 331 ALIGAGPRELTGRRRDGTTFALELALSEVRTEGRRIFIAVIRDITQRKETEGALAATRAR 390 Query: 407 QSLAVLGSGDIVWDWDIVR----DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 +V+ ++ + + + +LG+ ++ +L + + R Sbjct: 391 LQTIADNVPGLVFQRELTAEGVLRFLFVSNGVHEVLGITPEALLADGELFLGAMDPDVRA 450 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 FR L R ++ + ++R D + W+ RP +G ++ + G+ D+T++ Sbjct: 451 AFRETLRQSAS-RLEPMEEDIKLRGRDGEERWLRGWSRPSRREDGSVV-WDGVTLDVTDR 508 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K++ + + A+ D LTG+ NR F+DR A V+ I +D++ +N Sbjct: 509 KRAEDKLTFLAYYDPLTGLGNRSLFIDRFDRA-RRFAESIQAWVAVLSIGLDRFGMVNAT 567 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G +GD VL+++TRR+ + L+ I+ R G+RF ++L + + + ++ + Sbjct: 568 IGHTMGDKVLIAVTRRLQQSLEAGSIVCRAGGDRFLVLLTGLTDRADLREVVATIQDAFV 627 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSSFR 701 PI + ++ + +IG A + ++ +A+ A++ AK GG + + + + Sbjct: 628 PPIEVEGQQFDIGLTIGGALHPEDGREAETLIMHADAALHRAKGGGGAFQMFTPEMGARA 687 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + + I+ L +E E + P + L I G EAL +W+ P+ G + +F+ +A Sbjct: 688 AHLLTIQHKLRRGLERHEFVAYFQPQVDLRSGLITGCEALARWNSPEDGLVPPGKFIGVA 747 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELCEGMQALISK 820 EE +I AI +L+ R + +WR + P + + +NI+ + + +L + + + Sbjct: 748 EEYGLIDAICGQVLDDSCRWLSTWRARGL-PQVPVAVNISGRQFQNARQLVAMVDQALRQ 806 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + P ++L +ES M +PE + ++ LR+ G+S +DDFGT S LS L P Sbjct: 807 SGVDPRLLELELTESSAMSDPENAIAVVNLLRERGVSCAIDDFGTGYSSLSVLKRFPIGK 866 Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + + AI+++II MA + ++A+ + + L + CD +Q Sbjct: 867 LKIDRSFVMDVTTDPNDAAIVQAIIAMAHALNLRVVAEGVETLDHLAFLREVHCDAVQGF 926 Query: 939 HVASPLGFNSILKLLKERFP 958 A PL + +L P Sbjct: 927 LFARPLPGEDMALMLAGGPP 946 Score = 58.0 bits (139), Expect = 7e-06, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + + +LG M + L IH DR+++ L EFR Sbjct: 163 FLSSGVHAVLGYHPAEMSVALDGCLNAIHWADRESYLRRLRQS-AQTLAICSEEFRAITR 221 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + W+ +P + +NGDIL + G+ D+TE+K++ + Sbjct: 222 EGAVKWLSGASQPRAMANGDIL-WDGVLVDVTERKRAELWLEM 263 Score = 46.5 bits (109), Expect = 0.025, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 9/125 (7%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFR 465 + + + D + + + + T G G + G L + DR Sbjct: 261 LEMIMDRAADGIVTINEQGVIESANAAVGTFFGYADRGELIGRRVEIL--MAEADRRQHT 318 Query: 466 TILDSFVGYRRGRL----QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + G L E R D + + + + I +I + DIT+ Sbjct: 319 RHMLRYRETGDGALIGAGPRELTGRRRDGTTFALELALSEVRTEGRRI--FIAVIRDITQ 376 Query: 522 QKKSL 526 +K++ Sbjct: 377 RKETE 381 >gi|229188834|ref|ZP_04315868.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] gi|228594647|gb|EEK52432.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] Length = 569 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDREGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + + Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL +V PII L + G+EAL++ G Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVVLQPIIDLKTKRYSGIEALVRCMTED-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS +EF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 362 ISPNEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 420 FSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565 >gi|302129938|ref|ZP_07255928.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 674 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 142/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%) Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453 ER L V+ + D + D+ V P I G + G L Sbjct: 80 SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 139 Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D ++ + + R ++ E D W+ + I P++N G + Sbjct: 140 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 195 Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545 + + DITE+K + E + AF D LT + NR Sbjct: 196 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 255 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 ++ L R TV+ +D+D +K +ND +G GD +L + R+ ++ Sbjct: 256 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 314 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D+LAR+ G+ F I+L+ ++ A + + I + ++I ++ SIG + Sbjct: 315 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 374 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723 ++L++A++AMY AK +G F S D ++I+ L A+EN + + Sbjct: 375 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 434 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI E +VG+EAL++WDHP G IS F+ IAE+L +I + +++ + D+ Sbjct: 435 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 494 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 +WR + + +N++ K+L + + +I+ T +++++ +ESV + P+ Sbjct: 495 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPSAQLQIEVTESVFLYQPDA 554 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901 +L ++R +G+ + LDDFGT S L Y+ P D VK + S ++ ++ AI+ S Sbjct: 555 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSQAIVSS 614 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ + + ++ I A+ + L +MGC Y Q + P+ ++ +++ Sbjct: 615 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 668 >gi|229194941|ref|ZP_04321722.1| Sensory box/GGDEF [Bacillus cereus m1293] gi|228588509|gb|EEK46546.1| Sensory box/GGDEF [Bacillus cereus m1293] Length = 569 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 256/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKRE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL + + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + +R+ L +ES+ + + + L LR +GI + LDDFGT S L Sbjct: 420 LSVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565 >gi|299068645|emb|CBJ39881.1| putative signal transduction eal-ggdef domains transmembrane protein [Ralstonia solanacearum CMR15] Length = 1178 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 142/584 (24%), Positives = 257/584 (44%), Gaps = 24/584 (4%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATI 437 + F +Q + + + V + D + V P + Sbjct: 604 VALFGTMQDITERRESDEQLRL----LRRVVESVPSGITVADAQQPDLPLVYVNPGFERM 659 Query: 438 LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 G + + G +L + R L ++ R D Sbjct: 660 TGYRAEEVLGRNCRFLHSSEPGQPALNEVRAALRDASE-----IRVLLRNFRKDGHAFLN 714 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ +S G + Y+GI +D+TEQ+ + + +A D LTG+PNR DR+ + Sbjct: 715 NFLLSPVRDSQGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQGV 774 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +++A R V +I+ID++K +ND LG +GD+VL + R+ + D +AR G+ Sbjct: 775 EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 833 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +++ + F A PI + E+ VTASIG A + + S +++ Sbjct: 834 VFALVISHAGSHGTDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGSDSETLVR 888 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AE+AMY AK G N +E F S R+ ++ + A+E + L+Y P I Sbjct: 889 HAEMAMYFAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEQGQFRLLYQPQIDTKTG 948 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I GLEALI+W HP G + + F+ +AEE ++ I ++L A+ +W + Sbjct: 949 RICGLEALIRWIHPTRGLLPPAAFIPVAEESGLVVEIGNWVLAEAAQQRAAWHARGLGED 1008 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + I +N++ + + L + ++L +ES++M ER+ L +R+ Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+YL +P D +K + + + AI +++ +A N+ Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + L CD +Q + + PL ++ LL+ Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPEAVTALLER 1172 Score = 92.7 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 6/165 (3%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 GG + L+ T + A + + ER + D ++DWDI Sbjct: 333 QGGARDELSLLERTFNEMRTAILRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392 Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + +LG + + ++H D + F L + + R + RV Sbjct: 393 ASLHRLLGSDALLAQGDEDGVSRTLTFQQFVHPEDMEAFGRGLRAALHSDRDAWHHVCRV 452 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 A + IR +G LR +G DI+++ + Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRALRMVGGVTDISQRSAMEADLR 497 Score = 75.0 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 2/141 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + +A + W WD++RD T + + + G+ G Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSSGMYLLTGVPPG-PPPSFAQ 546 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R V E + D + W++ R N +++ Sbjct: 547 QAQFFTGDSYNRLREAASRAVTE-GVPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605 Query: 512 YIGIANDITEQKKSLEGILCN 532 G DITE+++S E + Sbjct: 606 LFGTMQDITERRESDEQLRLL 626 >gi|149911615|ref|ZP_01900227.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp. PE36] gi|149805336|gb|EDM65349.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp. PE36] Length = 950 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 164/944 (17%), Positives = 327/944 (34%), Gaps = 31/944 (3%) Query: 22 LLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI----DGISRRIEV 77 + + A E I I S V L T+ + ++ + + + Sbjct: 1 FSLNTTFAQA-EGIVIDSDFEVGRLGLTTKYFEDKTNSYTFDYLSQRQSAIPWVKSNQAH 59 Query: 78 SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFS 137 + W + N +D + ++ L + SR ++ + Sbjct: 60 FSVGFSDSTFWFKGEVVNKADVEKYLILDFGDSLLDYIDLYLIHDDSRVLVKRLGTRR-Y 118 Query: 138 LDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPNFYKDTVNSFTLYRGII 195 D ++ + I G + + + I T + +W N Y D + L GI Sbjct: 119 DDDNMSNLTFATGFKIGAGETIHYFIRIKTTAFLQTPLAIWNANDYIDDKSQHKLMVGIF 178 Query: 196 IGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS-KLVNLPSGELLIWR 254 IG+ ++ +LT Y+ + L+ L I I GF +++ Sbjct: 179 IGLFLMMVCYLTFLYIHLHEARLVQYIVFIICYLSVIWIIEGFGFIYKIDIIVQYYDSII 238 Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314 + +L +F L R+ A T I I+ + + I Sbjct: 239 VVLMGVIGLNLSLFARQLLKL-RYRAWFSLSTRILITSSIIVILSPLLFSFKISIILISV 297 Query: 315 LASIVLYYTYFIIYHGMKG-YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 LA + + + + + + + + + L + G Sbjct: 298 LALGITLLSIVCGLFFIHDESKDVRFYVLSLVYFILGIDIHILTRFGLLSEFEFADYVSG 357 Query: 374 GLVLIVIL-----IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 LIV++ + + + + S ER + + ++ I + + Sbjct: 358 CSALIVLIYLCWNFAKQMAHDRIVKKDVEKQMISVNERYYSVFQNAAEGMFTTSIEGNIL 417 Query: 429 TTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + LG M+ + + + R + + E Sbjct: 418 AINKSMCRTLGFINLEDMNKSGHSKADEFYAD--PQLRATIMETLRVEGEVNSVEMSGYD 475 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + I +R ++ I G + T++K+ + A D LTG+ NR F Sbjct: 476 RYGEIFHGEINMRLNIQAD--ITVIDGSFVNTTKRKQHEIKLESIAKYDQLTGLVNRSHF 533 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 + L+ + ++ +D+D++K +ND+ G VGD +L +T + L Sbjct: 534 EKLVGASLE-ANRSVLEDNILLYLDLDQFKLVNDICGHDVGDSLLKKITVVLKSFLDESA 592 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 ILARL G+ FGI+L N + R + SIG + S Sbjct: 593 ILARLGGDEFGILLNHTNFDNALEVADTIRCGIEDFRFTHNGRHFVLGVSIGVVTLDESI 652 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLV 723 S+ L A+ A + AK +G N V + + + L A++ + L Sbjct: 653 ENFSQALSLADTACFTAKEQGRNRVHVYSKCNDVMLGHQREMRWIGVLREALDENRFELA 712 Query: 724 YHPIIRLMDEEIVGL--EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 + I L G E L++ S SEF+ AE + ++ ++++ + Sbjct: 713 FQTIKPLSASIKEGYRYEILLRLRDEDGNLQSPSEFIAAAENYNFMSQLDRWVVKTYCQW 772 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 + S IN+ + L+D + ++ I P ++ +ES + + Sbjct: 773 LSSNPKHLANLS-SASINLCGQSLVDRSMHSYIENTILTYGIPPEKLCFEITESQAIMDF 831 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAIL 899 +++ L + + + +G +LDDFG+ S SY+ +P D +K +GS + ++ Sbjct: 832 DQTILFMNKFKALGCRFSLDDFGSGFSSYSYIKRLPIDQLKIDGSFVKNIETDNVDYTMV 891 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 +S +AK + +A+ + E L+ +G DY+Q +A P Sbjct: 892 KSFNEIAKAVNIKTVAEYVENENIKNILSGIGIDYVQGYLIAKP 935 >gi|218440066|ref|YP_002378395.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424] gi|218172794|gb|ACK71527.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424] Length = 712 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 136/560 (24%), Positives = 257/560 (45%), Gaps = 28/560 (5%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 D R + S + + + + P + L H Sbjct: 166 EDLNRLASFPELSPNPIIEISFQGEITYINPAAN---------LQFNNLQQLQLDHP--- 213 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 +LD + L E +V + + + N DITE Sbjct: 214 -ILMGLLDQSKNTQGNLLLREVQV-----EESIYEQYVHYLPNHQ----LIRSYLFDITE 263 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K++ + + AF D LTG+PNR F +L L+ + + ++ +D+D +K IND Sbjct: 264 RKRTEQKLKYQAFHDVLTGLPNRIWFNQQLIAALNNAKRQE-TPLAILFLDLDGFKNIND 322 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG GD VL +R+ ++ D + R G+ F ++L +++ A + + Sbjct: 323 TLGHTFGDQVLQKFGKRLLGSVRAGDTVCRWGGDEFVVLLPYISHTEDSIKLAQRILDVL 382 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699 P + +++ + S+G + + +LKNA+ A+Y AK RG NH + + +++ Sbjct: 383 KHPFEIQKQQFYIKTSMGISIYPQDGEDGETLLKNADAALYRAKERGRNHFQFYSTTMTT 442 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 S + ++ L A+EN EL L Y P +++ EI G+EAL++W HP+ G +S + + Sbjct: 443 KASLVLRLENLLHRALENQELSLYYQPQVKIKTGEITGIEALLRWTHPELGQVSPHKLIP 502 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AE+ +I I + L+ + + W+ + P+ I +N +++ L + ++ Sbjct: 503 LAEQTDLIIPIGQWALKTACQQSLDWQK-LGIKPLPIAVNFSARQFQQPNLVTLINQVLE 561 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T +P+ ++L +E+ +M N + +R L LR++G+ ++LDDFGT S LSYL P Sbjct: 562 ETGLAPNLLELEITETTIMQNEDFARQALEELRQMGVHISLDDFGTGYSSLSYLQKFPLT 621 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 T+K + + +AI+ +II + +++ +IA+ + ++ L R+ C Q Sbjct: 622 TLKIDQCFTHSLKDNPQDLAIISAIITLGNHLQLRVIAEGVETLQQLEILQRLHCQEAQG 681 Query: 938 SHVASPLGFNSILKLLKERF 957 + PL I +LLK+ F Sbjct: 682 FWFSRPLNSEDITQLLKQYF 701 >gi|302523746|ref|ZP_07276088.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302432641|gb|EFL04457.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 901 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 151/558 (27%), Positives = 263/558 (47%), Gaps = 14/558 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + V + V + P ILG+ + G L Sbjct: 349 ARRRVEQHYATVVAALDEGVLVIGPTGLIQSANPSACRILGVPEPELLGVSCTTLVLFDE 408 Query: 459 NDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + L S R G R+R D + W+ + R + + + + + + Sbjct: 409 DGNRIPDDELPSMHTRRTGVTHNGLVVRLRRPDGRDVWVSLTSRLLDSDDPNGVSVVTSF 468 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE++ + A D LT + NR LDRL D V+ +D+DK+ Sbjct: 469 TDITERRAISARLAHEATHDPLTRLANRTLVLDRLD------RRDGAESAAVLFLDLDKF 522 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG VGD VL R+ D++ RL G+ F ++ + ++ FA Sbjct: 523 KLINDSLGHPVGDQVLRIAGERLRRATGPDDVVGRLGGDEFVVVTSATTGPAQVGVFAAH 582 Query: 637 MRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 +R ++ P+++ R++ + AS+G + T+ ++L++A++AMY AK RG E F Sbjct: 583 LRSVLSEPVSVHGRQLHLDASMGIVLVEPDDRRTAEDLLRDADVAMYQAKSRGRGRFEFF 642 Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 V R+ +++DL AV + +L+ Y P++ L E+VG+EAL++W HPK G IS Sbjct: 643 DVALRERMQRRLRMEQDLRDAVHSGQLWPAYQPVVDLRTGEMVGVEALLRWTHPKHGAIS 702 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +EF+ +AEE +I + ++L R++ + R + + +N++ + L D L Sbjct: 703 PAEFIPLAEESELINVLGKYVLRDTTRELAALR-TGRGLDLSLKVNLSVRQLDDPHLVPA 761 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ ++ T P + L +ES +M + + +L LR +G+ L +DDFGT S L+ L Sbjct: 762 VRDALATTGLPPGSLTLEVTESALMRDTSAAAEVLSALRSLGVLLAIDDFGTGYSSLAQL 821 Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + DT+K + S +TG + AI+ SII MA ++ T++A+ + ++ L +G Sbjct: 822 RRLTLDTLKIDRSFITGIADSRDAAAIVTSIIAMAHAVDLTVVAEGVETAEELALLRELG 881 Query: 932 CDYIQDSHVASPLGFNSI 949 CD Q H+ PL + Sbjct: 882 CDQAQGYHLGRPLAAAEL 899 Score = 41.9 bits (97), Expect = 0.60, Method: Composition-based stats. Identities = 11/115 (9%), Positives = 29/115 (25%), Gaps = 19/115 (16%) Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D + P T+ G + G + + I + + V Sbjct: 262 SDAIVTITGEGIVTGWNPAAETVYGWPAPEALGRRVHEVLGIDPD-----PASIRDGVAQ 316 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + R D + + + ++ + D T +++ + Sbjct: 317 QTH--------RGRDGSPRQVRVSATETVD------GFLLVCTDETARRRVEQHY 357 >gi|71282294|ref|YP_268360.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71148034|gb|AAZ28507.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 1075 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 145/528 (27%), Positives = 248/528 (46%), Gaps = 9/528 (1%) Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 P ++ I G ++ + G ++++ + R G Q E + Sbjct: 549 PALSDITGYSTSELIGKDPKIFSS-GKQSLQFYQSMWEEIK--RTGTWQGEIWNTRKNGD 605 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + I + + +G + R I + +DITE+KK IL A D+LT +PNR+ F+DRL Sbjct: 606 EYPEWLSINTIYDDDGKVFRRIALFSDITEKKKKDALILRQANYDSLTNLPNRRMFIDRL 665 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 + +S + ++ ID+D +K IND G GD +L +RI ++ D +AR Sbjct: 666 EQEIKVSHR-KKQKFALIFIDLDNFKNINDTRGHVFGDQLLTEAGKRITHCVREVDTVAR 724 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+L + + + +++ P + + ++AS+G + + T+ Sbjct: 725 LGGDEFTILLSDLSEIYNVESICQKVLLALSQPFCISKLYTYISASLGVTIYPNDASTTL 784 Query: 672 EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729 E+LKNA+ AMY AK G N F + +++ + DL A+ ++L + Y PII Sbjct: 785 ELLKNADQAMYLAKDLGRNQFCYFTASMQEQAQNKLELMNDLRTAISLNQLAVFYQPIIE 844 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I EAL++W HP G +S +EF+ +AEE +I I ++ ++ + I + Q Sbjct: 845 LQTGIIRKAEALLRWKHPVRGMVSPAEFIPLAEESGLIIEIGDWVFKQTVQHIKECKKQL 904 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I I IN + + +++ S I + +E ++M N + L Sbjct: 905 G-LDIQISINKSPVQFRETVSQLDWLTYLTENQLSGKNIVIEITEGLLMNNNTSTMEKLS 963 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAK 907 RLR I L++DDFGT S LSYL D +K + S + ++ +II MA+ Sbjct: 964 RLRAADIKLSMDDFGTGYSSLSYLKKFELDYLKIDQSFTKNLAQGSEDMILSEAIITMAQ 1023 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +IA+ I E K L GCDY Q + + P+ + L+LL Sbjct: 1024 KLGLKVIAEGIETEEQRKLLLDSGCDYGQGYYFSRPIPADDFLQLLAR 1071 Score = 56.9 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 64/212 (30%), Gaps = 7/212 (3%) Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 + + L++ +++ + + ++ L + L ++ Sbjct: 315 LIVSIGFSSTLFLIVLYFLIGLYFSTIRSINYLTKVTGKFYGGDLDARVTLYTRDELNSI 374 Query: 387 IQHVLATGYFSQGIFSDGE----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 Q + + E R + S +W ++G+ Sbjct: 375 ALGFNEMASSFQNLLIEKEEISTRLLAIIDNSPIGIWFTGTDGRYHFVNKTFCNLVGIEE 434 Query: 443 GSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 M + + N + +G + YE + + + + + I Sbjct: 435 EDMLNTPSSNLAELLGSEIAHNCLDSDRAALGQDLAHVSYET-IPRLNAKPYLLEITKVK 493 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + N+ G ++ IGI+ DIT K+ E L A Sbjct: 494 LKNTRGKVVGLIGISKDITN-KRQQEDDLKLA 524 >gi|218230897|ref|YP_002365424.1| sensory box/GGDEF family protein [Bacillus cereus B4264] gi|218158854|gb|ACK58846.1| sensory box/GGDEF family protein [Bacillus cereus B4264] Length = 567 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKRKELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ G Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS SEF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 360 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563 >gi|83313593|ref|YP_423857.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82948434|dbj|BAE53298.1| Predicted signal transduction protein containing a membrane domain [Magnetospirillum magneticum AMB-1] Length = 982 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 145/572 (25%), Positives = 270/572 (47%), Gaps = 14/572 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E LA G+ + D R + + G + M G + L Sbjct: 415 ARKQAEESLRLAATVFETVGEAIVVTDRERRILAVNAAFERMTGWNAAEMVGQTCDLLAV 474 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM---SNSNGDILRY 512 I R+ + + G+ E R +++ + + + +++ G+ R+ Sbjct: 475 EMIGLRE-IEEMWR--LAANTGQWSGETWTRRKESEPFPAALALTAVDQGADAKGEDGRF 531 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + DIT +++ + I +A D LT +PNR + ++ L + + R V+ +D Sbjct: 532 VLLLRDITRKRRDEQRIRFHASHDALTRLPNRHTVMEALGEAIVRAEQTGE-RLAVLYLD 590 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 ++++K IND G AVGD++L + RR+ ++ D++ RL G+ F ++L S + Sbjct: 591 VNRFKDINDSYGHAVGDELLRQVARRLKACVRASDVIGRLGGDEFVMLLPSVGDHTAAQA 650 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNH 691 A + + A P ++ ++ SIG A + + +L A+ AMYHAK G Sbjct: 651 CANKVLYAFAEPFDMEGLQLFAGTSIGIALYPDDADGAESLLSRADAAMYHAKRGGLPYS 710 Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + ++RV ++ DL LA+ + LVY P + + I+G EALI+W HP + Sbjct: 711 CFDIEMDRQVAERVSLENDLRLALGEDQFRLVYQPKVDALSGAIIGAEALIRWRHPVRAD 770 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S F+ +AE +I AI+ ++L R + WR Q + P I +N++ D L Sbjct: 771 VSPGLFIPVAERAGLIGAIDDWVLVEACRQVAEWRAQGLILP-SISVNLSPAQFHDGRLK 829 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E ++A ++ + PS ++L +E+++ + +R+ +LG+L +G+ ++LDDFGT S L+ Sbjct: 830 EKVKAALAGSGLPPSVLELEITETMMASDVDRAIEILGQLTTLGVRVSLDDFGTGYSSLA 889 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P T+K + + +T K AI+ S+I +A N+ ++IA+ + L Sbjct: 890 YLKLFPVSTLKIDRAFVTELPGNAKDGAIIASVIALAGNLGFSVIAEGVETREQAAFLAA 949 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 GC +Q + P+ + LL L++ Sbjct: 950 RGCPIMQGFLFSRPVNAATFAGLLSNPEGLIR 981 Score = 78.5 bits (192), Expect = 6e-12, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH--INDRDN 463 + + ++ + P +A I G + + + ++ DR+ Sbjct: 302 YRSLFENAVEGIYRTTPDGRYLDANPALARIYGYKDPAELIAGLTDIARGLYVDPADRER 361 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 FR + +E RVR + W+ R + + ++ Y G +IT +K Sbjct: 362 FR----EILARDSVVRNFEARVRTRSGEIIWIAENARAVYDGRDRLVCYEGTVQNITARK 417 Query: 524 KSLEGILCNAF 534 ++ E + A Sbjct: 418 QAEESLRLAAT 428 >gi|307293714|ref|ZP_07573558.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] gi|306879865|gb|EFN11082.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] Length = 722 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 140/570 (24%), Positives = 264/570 (46%), Gaps = 12/570 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPI 449 L Q + R + D + D R+T P ++ ++ L+ + G Sbjct: 130 LELRSARQRLIESELRYRRLFETASDGIVLLDRESGRITDVNPALSEMINLSPSQLLGRT 189 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 ++ + + +LD + +R ++ + + + + + Sbjct: 190 FGETEPF--SNNPSCKRVLDE-LRHRDHVWFEDWILETGRGTSVNVEVNGSVYKAATTTV 246 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ DIT++K++ I A D LTG+PNR F DRL + + + V+ Sbjct: 247 IQC--NLRDITDRKEAEARIRYMALHDALTGLPNRTLFEDRLDNAIAQARRHHG-QVAVL 303 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++D+D++K IND LG VGD++L + R+ L+ D ARL G+ F IIL + Sbjct: 304 MLDLDRFKNINDSLGHHVGDELLEQVAARLRACLRESDTAARLGGDEFAIILPEIASIED 363 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A + + + P ++ + E+ + SIG A + +L+ A+ AMY AK +G Sbjct: 364 AEIVAKRILEVLQEPFHVEQHELNIGGSIGIARYPDDGTDHGTLLRAADAAMYDAKAQGR 423 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 F + ++ + D+ A + E L Y P + L +I G+EAL++WDHP Sbjct: 424 GMYRFFSPELNEAAQLRHMLVNDVRHARQRGEFLLYYQPQLSLASHQISGVEALLRWDHP 483 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 K G IS + F+ + EEL ++ + ++L R W+ Q PP+ +N++++ Sbjct: 484 KHGIISPALFIPLLEELGLMSDVGEWVLRTACRQNAEWQAQGL-PPMRTAVNLSAQQFYR 542 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + + + ++ ++ P ++L +E++ + E + ++ L+ +G+ LTLDDFGT Sbjct: 543 GNIVKTVARVLEESGLEPKWLELELTETLTLDESETTIEIMNGLKNLGVGLTLDDFGTGW 602 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL P D +K + S M + E A++ SI+ +A+++ T IA+ + ++ Sbjct: 603 SSLSYLRRFPLDRIKIDRSFMRDVTTHENAAAVVHSILNLAQSLGLTCIAEGVETAEQLQ 662 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C +Q + PL + LL+ Sbjct: 663 YLKQQLCSEMQGFFFSHPLPAAEMPTLLRA 692 >gi|297204084|ref|ZP_06921481.1| diguanylate cyclase/phosphodiesterase [Streptomyces sviceus ATCC 29083] gi|197714750|gb|EDY58784.1| diguanylate cyclase/phosphodiesterase [Streptomyces sviceus ATCC 29083] Length = 714 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 134/566 (23%), Positives = 246/566 (43%), Gaps = 19/566 (3%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHI 458 + + R G+ + D+ + + + + GL +M G ++ W H Sbjct: 148 LHATEARFRAVFEGAAIGIGIADLDGNVLQVNGALLRMFGLTDPTMRGRKVQEWT---HP 204 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + D V R E D W + + + +++G + + D Sbjct: 205 EDAPQTWKLYDELVRGEREHYHLEKAFYRPDGTVLWTNLTVSLLRDADGAPQYQLALMED 264 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 TE++ + A D LTG+PNR F +RL L D R + +D+D +K Sbjct: 265 TTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALS---AGDGQRFGLCYLDLDGFKT 321 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG A GD +LV + R+ +++ARL G+ F + + ++ D A + Sbjct: 322 INDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDTESEVDDLAARI 381 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + P+ + RE+TV SIG + + +E+L++A++ MY AK GGN E Sbjct: 382 MNVLLAPVRIDGRELTVRGSIGIVEGPAGERGPAEVLRSADITMYRAKSAGGNRFELADP 441 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + L A++ E ++ Y P++ L D + G EAL++W HP+ G + Sbjct: 442 EADARAITRHGLTTQLPAALDRGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLGPD 501 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQAN----MPPIFILINIASKDLLDNELC 811 F+ +AE +I + ++LE+ R WR++ P+ I +N++ L L Sbjct: 502 RFIPLAEHTGLIVPLGRWVLEQSVRQAREWRERYGENTAGGPLRINVNLSPCQLTHPGLV 561 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + ++ + P + L +ES ++G + L +L ++G+ + LDDFGT S L+ Sbjct: 562 QDTVDILERAGVDPDALCLEVTESALIGADDDLLKPLRQLAEMGVDIALDDFGTGYSNLA 621 Query: 872 YLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L +P +K + S + I+ I+ +A + + + + ++ Sbjct: 622 NLRRLPVSVLKLDRSFTRSMQQFPADPVDLKIVEGIVSLAHGLNLAVTVEGVETGAQAEQ 681 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952 L +GCD Q + A P + +L Sbjct: 682 LRILGCDTAQGWYYARPGPPERLHQL 707 >gi|167626093|ref|YP_001676387.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis HAW-EB4] gi|167356115|gb|ABZ78728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella halifaxensis HAW-EB4] Length = 1072 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 146/588 (24%), Positives = 273/588 (46%), Gaps = 18/588 (3%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + I V Q V + + S S + + D P I Sbjct: 483 ELAQIAVAVNQMVSERMKSKRALHQA----SAVFRHSAEGILVTDANNRIELVNPAFTKI 538 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + + G N L H +F L + + G + E + D Q + + Sbjct: 539 TGYSLEDVKGKTPNILNSAH--HPQSFYQKLWQTLITK-GSWEGEIWNKRKDGQIYPEYL 595 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 +I + NS + +++IG+ DI+ K+ + + D+LT +PNR F RL LD Sbjct: 596 KISAVKNSQNETIQHIGLFLDISNNKQYEQDLWYKTNYDSLTKLPNRHLFSSRLQQALDT 655 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + + + ++ ID+D +K IN++ G A G+ VL R+ +L D +AR+ G+ F Sbjct: 656 AQ-NTDSQVAILFIDLDHFKFINELHGNAAGNKVLKQSAARLEAVLGPDDSIARIGGDEF 714 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 II + A + +++ P + E +++S G A + +L N+ Sbjct: 715 VIIAPQTGSVGT-ELLAKKLSDALSKPFMIGNHETNISSSFGIAFYPEDGQDIETLLHNS 773 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 E AMY AK G H + F R+ +++ L AV+ SE YL Y P+I + + I Sbjct: 774 ETAMYQAKRDGRAHYQYFSPEMNVEMLERMHLEQRLRRAVKQSEFYLEYQPVIDMRNGAI 833 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 + +EALI+W+ P++G IS F+ IAEE +I+ + ++L + D+ Q M + Sbjct: 834 ISVEALIRWNDPEFGVISPQAFIPIAEEAGLIEPLGEWILHQALSDLAELHSQGLM--LK 891 Query: 796 ILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + IN++ + +++ + ++ +SK + + +ES+++ + R L ++ Sbjct: 892 MAINVSGRQCINSKDVSFYDILKDALSKHAICAKDLHIEITESMLIEDKPRCLQTLESIK 951 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 ++G+ + LDDFGT S LSYL P +K + S + + ++++I+ MA+++E Sbjct: 952 QLGVDIYLDDFGTGYSALSYLTQCPISVIKIDKSFIDNVLNNPSDAKLIKAIVMMAQSLE 1011 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 ++A+ I + L +GCDY Q ++ PL +++ L++ P Sbjct: 1012 MPLVAEGIETVEQWQFLHSLGCDYAQGYLMSRPLTKPQLVEFLQQAKP 1059 >gi|186683707|ref|YP_001866903.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc punctiforme PCC 73102] gi|186466159|gb|ACC81960.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc punctiforme PCC 73102] Length = 720 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 140/551 (25%), Positives = 267/551 (48%), Gaps = 27/551 (4%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + +L L + IH +D + + YE+R+ Sbjct: 163 YISFGCLDLLELTPDQILENASLCFAQIHPDDYPGCYAAANESAQTLK-PFSYEWRLVTP 221 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ--------------KKSLEGILCNAF 534 + W+ RP NGDI+ Y G+ D+ E+ K++ E I+ N+ Sbjct: 222 SGKLKWVQASARPECRENGDIVWY-GVLLDVNERQVALREQQAALRERKQAQELIIHNSL 280 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LT +PNR ++RL ++ + + R V+ +D+D++K IND LG GD +L + Sbjct: 281 HDPLTDLPNRTLLIERLELAINRAKRLETYRYAVLFLDLDRFKVINDSLGHLAGDQLLKN 340 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + ++ L+ D++AR+ G+ F I+L ++ K M P+ L + E+ + Sbjct: 341 IAHKLKTHLREVDLVARIGGDEFVILLEDISDIEKAIQITERMLIDFQTPLMLNDAEVVI 400 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLC 712 + SIG T+ +S++L++A++AMY AK + N + F + + +R+ I+ D+ Sbjct: 401 STSIGIVLGTNEYSQASDLLRDADIAMYKAKAQRRNSYKIFDVKMHTQAVNRLTIETDIR 460 Query: 713 LAVENSELYLVYHPIIRL------MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 A+E E + Y PI+ + ++G EAL++W HP G + EF+ IAEE + Sbjct: 461 KAIEREEFVIYYQPIVDILGDGQSKAGRLIGFEALLRWQHPTRGLVLPKEFVSIAEETGL 520 Query: 767 IKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSP 825 I I+ +ML + + + W+ + PI + IN++ +D+ L E + ++++ Sbjct: 521 IVQIDRWMLYKACQHLADWKVKFATHFPIKVNINLSVQDIRQGNLIEYIDQILAQIGLEG 580 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 I L +ES+++ N ++ LL +L+ I +++DDFGT S L+YL +P D +K + Sbjct: 581 DCITLEITESMLIENISQTIDLLSQLKSRKIKISIDDFGTGYSSLNYLHRLPADNLKIDR 640 Query: 886 SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S ++ + ++ +II ++ + ++A+ I ++ L +GC++ Q + P Sbjct: 641 SFVSQMQQGNRNYQVVSTIIALSNQLGLAVVAEGIETPQQLQWLQELGCEFGQGYLFSKP 700 Query: 944 LGFNSILKLLK 954 L ++ LL Sbjct: 701 LSHQTVEALLT 711 >gi|299067851|emb|CBJ39062.1| conserved protein of unknown function, eal-ggdef domains [Ralstonia solanacearum CMR15] Length = 903 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 139/575 (24%), Positives = 258/575 (44%), Gaps = 12/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447 + + ++ + ER LAV + + + P IL G S Sbjct: 325 AVQKAHIARELQESEERYRLAVDNLTEGILVQAADGTILACNPSARRILRAGDQSPVGAS 384 Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + + + + + R L + D W+ + P+ Sbjct: 385 HLTLMRRSLREDGSELPFLERPTRVVLTTGRPLLGLTIGLELIDGDVVWVYENVLPIMRP 444 Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + NDI + + + + A +D LTG+ NR FL R+ +LD + TD Sbjct: 445 GDATPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDEAVTDGR- 503 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D +KK+ND G GD +L + +R+ ++ D LARL G+ F ++L Sbjct: 504 QAAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQV 563 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + +IA P + E + ASIG A ++ +L+ A+ AMY+A Sbjct: 564 RSLAEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGQDAATLLRCADAAMYNA 623 Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F V R ++++L A+ EL L + PI+ IVG E L+ Sbjct: 624 KQNGRNQHRVFTVQLSQRAQRRFQLEQNLRRALSAQELSLRFQPIVDAASMGIVGAEVLL 683 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G +S +EF+ +AE+ +I AI ++L + R WR P FI +N++ Sbjct: 684 RWHSAELGEVSPAEFIPVAEDAGLIIAIGEWVLAQACRQAAHWRRTCA-PDFFIAVNLSP 742 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + D L + ++++ +++ +E ++M + +L L +G+ +++DD Sbjct: 743 RQFGDA-LVPMLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL P D +K + S ++G R +++ R+++ MA +++ T+ A+ + Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GCD +Q +P+ + + L+ Sbjct: 862 LAQAEFLLAAGCDKLQGFLFGAPMTAAAYEERLRR 896 Score = 43.0 bits (100), Expect = 0.22, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 7/145 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLP 454 S+ + +R V D ++ V +LG ++ + G + Sbjct: 19 ASRPLPFADDRYEALVRQMPDALYIV-ADNIIVFINEAGVRLLGADSASDIVGRELD--A 75 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 ++H + R + V + G E + D + I P+ G Sbjct: 76 FVHEDSVQLARQRREWMVEHGAGLPPVEQTLLRCDGTPVDVEILSAPV--QLGWRTAVQV 133 Query: 515 IANDITEQKKSLEG-ILCNAFQDNL 538 +A DI ++K++ + A L Sbjct: 134 VARDIRQRKQAEQALRESEANYRAL 158 >gi|120598370|ref|YP_962944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sp. W3-18-1] gi|120558463|gb|ABM24390.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. W3-18-1] Length = 1436 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 134/561 (23%), Positives = 263/561 (46%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V I G + + ++ Sbjct: 876 QKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 933 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 NF + + + + + GR E DN+ M + I + + G++ Y+G+ +D Sbjct: 934 E---NFSSQIRTMLKQQ-GRWANEVEAVRGDNRHFHMELTIDAIYDELGELSHYVGVFSD 989 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LTG+PNR + L+ ++ + + ++MV+D+D +K+ Sbjct: 990 ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLV-----NKEIAHSLMVLDLDNFKR 1044 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L ++ R+ +L + RL G+ F I+L ++ A A + Sbjct: 1045 INDSLGHQVGDQLLKLVSIRVKSILPKNTSIYRLGGDEFAIVLDKGSDISASAAIAGRVI 1104 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 ++ M N+ E ++ + SIG + + +L+ A++AMYHAK GGN + + Sbjct: 1105 EAFKMSFNINEEQLVLGLSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNCYQFYSES 1164 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ I+ + ++ + Y P I L + G+EAL++ +HP G I E Sbjct: 1165 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKIDLKRGRVAGMEALVRLNHPVQGLIPPKE 1224 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + WR+Q + +N++S+ ++ + +++ Sbjct: 1225 FIPLAEESGLIVEIGEIVLRKACFAAQKWREQGLFNG-RVAVNLSSRQFALPDIQQRIES 1283 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T ++L +E V+ PE + +++ +L K+G+SL LDDFGT S LSYL Sbjct: 1284 ILRLTKLPACHLELEITEGTVIKQPEAAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1343 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1344 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1403 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + + LL+ Sbjct: 1404 IQGYIFSKAIKESEFTLLLQA 1424 Score = 114 bits (285), Expect = 9e-23, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 3/169 (1%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + A +L+V+ + +L + I ER L++ GSGD +WDWD Sbjct: 716 PWWLSTEAKSLYFILLVVSLLIVTKT-ILRRRETQRQIALSEERLKLSLWGSGDEMWDWD 774 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I + + + L N IH D++ R L+ + Sbjct: 775 IETGNIFRSNIWGS-LEFPRDGHRSGKNNEESNIHPMDQERVREALNKHFYGETDHFEAA 833 Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 +RV+ D + W++ R + + + + LR G +I++ K+ E + Sbjct: 834 YRVKGKDENWVWILDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLR 882 >gi|295691059|ref|YP_003594752.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC 21756] gi|295432962|gb|ADG12134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caulobacter segnis ATCC 21756] Length = 691 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 139/560 (24%), Positives = 251/560 (44%), Gaps = 14/560 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 D +R +A+ +V ++D+ + + + + L +H Sbjct: 140 RAERDEQRLRMALELDDLLVREYDLRTGEIFFSDTAPGL-----RKWCVFKDDPLEIVHP 194 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +DR ++ S EFR+ D W+ + + +G + + + D Sbjct: 195 DDRQQCADVIASRKVGEARVF--EFRLNRDDGVETWIRAVGKVFVDQDGQPEKLVNLFKD 252 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT++++ E I AF+D LTG+PNR F R + ++ +++ID+D +K Sbjct: 253 ITDRRRQTEAIETLAFKDPLTGLPNRALFQHRFNEAVS-ASETLGEMFGLIMIDVDHFKD 311 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD +L L + + D +ARL G+ F +IL + ++ Sbjct: 312 INDTLGHDAGDVLLKRLAGMLRRAFRSGDTVARLGGDEFAVILRGLRGEADMMRPIQKLQ 371 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + + PI R T TASIG A + + M+KNA++A+YHAK G N F + Sbjct: 372 ELLQRPIEYAGRSFTATASIGAALHGDPEADPAHMIKNADIALYHAKEAGRNRSIVFEPA 431 Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ D+ AV +E L Y P++ + + +VG EAL++W HP+ G ++ Sbjct: 432 MRTELERRVELLRDVRAAVAANEFTLFYQPVVDIRERRVVGFEALMRWIHPEQGVLTPGH 491 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 FM E+ + + E+ R + +W DQ I +NI++ L E +Q Sbjct: 492 FMAAFEDQELSLRLGDLAFEQSLRQMRAWLDQGVEFG-RIAVNISAAQFRSGRLAEEVQE 550 Query: 817 LISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +++ +R+ + +E+V MG + + RL G+ + LDDFGT + L+ L Sbjct: 551 RLARWNVPCARLTIEVTENVYMGWGSDLVSGNISRLHAAGVMIALDDFGTGYASLANLRQ 610 Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 P D +K + S + + AI++++I + ++ ++A+ + + L R GCD I Sbjct: 611 FPIDRLKIDKSFVQN--AEDEAIVKAVITLGASMGMKVVAEGVEDPDQLAALIRYGCDQI 668 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q H P+ + L+ Sbjct: 669 QGYHFGKPMPAEEVAGFLER 688 >gi|89092006|ref|ZP_01164961.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) withPAS/PAC sensor [Oceanospirillum sp. MED92] gi|89083741|gb|EAR62958.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) withPAS/PAC sensor [Oceanospirillum sp. MED92] Length = 1250 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 148/573 (25%), Positives = 277/573 (48%), Gaps = 10/573 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + +R +A + D++++WD+ D + DI +LG GS+ I Sbjct: 552 ELKNIEKALRISEQRFKIAGEAAYDLIYEWDVETDSLHWFGDIDDLLGYPKGSISQDISA 611 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 WL IH D+D ++ ++YE+R++ + ++ P+ + N R Sbjct: 612 WLNLIHPEDKDLLGDAVERH-RTSTQPIKYEYRIQHKKGHYLYLSDHALPLLDENRRPYR 670 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 +IG+ DIT QK+ + NA+ D LT +PNR DRL+ + V+ I Sbjct: 671 WIGVCTDITTQKEQQLLLEFNAYHDKLTNLPNRVLLADRLSQAMHQQKRRGQT-LAVVYI 729 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K+IND G VGD +LV + +R LL+ D +ARL G+ F +++ N+S+ Sbjct: 730 DLDGFKQINDQYGHDVGDVLLVEIGQRFQTLLREGDTIARLGGDEFVAVMLDINSSMDSI 789 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGN 690 + +I++P+ + + + V+AS+G + ++ ++L+ A+ AMY AK G N Sbjct: 790 PLLRRILHAISVPVLVDDVVLQVSASLGVTFYPQAEDVDGDQLLRQADQAMYQAKLEGKN 849 Query: 691 HVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F + RS R + + L + E L Y P + + +++GLEALI+W+HP+ Sbjct: 850 RYYFFDMEHDRSLRGQRETVERIELGLRQREFELYYQPKVNMHSGDVIGLEALIRWNHPE 909 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + +F+ + E+ + I +++E R + +W Q + + + +NI L + Sbjct: 910 DGLLMPGQFLPVIEDKPVAIEIGEWVIEDALRQMDAWSFQGHD--LSVSVNIGGLQLQQD 967 Query: 809 ELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 E ++AL+ K + ++L ES + + + ++ R ++G+S +LDDFGT Sbjct: 968 NFVERLEALLKKFPRVASECLELEVLESSALQDIQLVSKVMQRCNELGVSFSLDDFGTGY 1027 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL +P +K + + + +AIL ++ M+ +IA+ + + Sbjct: 1028 SSLTYLKSLPAANLKIDRTFVRDMLDDPDDLAILEGVVGMSTAFRRGVIAEGVEEIAHGE 1087 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 L ++GC+ Q +A P+ I + P Sbjct: 1088 MLIKLGCNLAQGFAIAKPMKAALIPDWISSWNP 1120 Score = 44.2 bits (103), Expect = 0.10, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 5/142 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + Q + + + ++ + ++ D + + + G A Sbjct: 418 LVIAQDITEIVEAQRQLEISEKKFRTILDSVDAYIYLKDKAGHYLFANRKVRELWGAAME 477 Query: 444 SMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + + H D V L+ E P+ Sbjct: 478 DIVGFGDDKFFD--HPT--AKNIQHNDRLVLDDGQTLKVEEVNTLPGGGTTTYQSTKLPL 533 Query: 503 SNSNGDILRYIGIANDITEQKK 524 + +GDI GI+ DITE K Sbjct: 534 RSEDGDIYALCGISVDITELKN 555 >gi|330812674|ref|YP_004357136.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380782|gb|AEA72132.1| putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 946 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 141/578 (24%), Positives = 264/578 (45%), Gaps = 8/578 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + S+ + + + + + + +D + + G Sbjct: 369 RVLRMVGTRRDISASKELEQQRQLAATVFEAASEGIVIFDPHYVLLAANQAFTRVTGFNI 428 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 M G LP D I+ + G Q E A+ + + +++ + Sbjct: 429 DEMLGRNVVDLPC--SRDARRHYPIIRQALKQ-HGTWQGELVEARANGELYPQWLQLNVV 485 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 N+ G++ +G D++ +++S E + D LTG+ NR F +RL Sbjct: 486 RNARGNVSHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLHEAHQRVRQGG 545 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ I++D++K +ND LG + D +L + RR+ L D +ARLSG+ F ++ Sbjct: 546 RRSLALLHINLDRFKLLNDSLGHDIADQLLQKMARRLINALPEADTIARLSGDEFAVLFD 605 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + N +A A + + +P+ + E+ ++ASIG + + + ++ A +AM Sbjct: 606 AYGNLSSLARVATRLAAKLRVPLTIEGHELVLSASIGISLLPDNTREVAMLVSQANMAMQ 665 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAKH GGN+ + + S S R+ ++ L A+E +L + Y P + L + EA Sbjct: 666 HAKHLGGNNFQFYTDSLQASTLERLQLENQLRKALEEQQLKVFYQPKLCLATGRLNAAEA 725 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++WDHP G + +F+ +AEE +I I F+L + W+ Q PI + +N+ Sbjct: 726 LVRWDHPAMGRVPPGDFIGLAEETGLIGPIGEFVLRQACWQACEWQRQGL-APIRVSVNL 784 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L ++ ++ +T P ++L +ES ++ + E +LR +G+ L + Sbjct: 785 SVHQLRQGKLVSLVRQVLEETGLDPQYLELELTESQLLDSVEHIIATFQQLRDLGVKLAI 844 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL IP D VK + + + G E AI R+II MA + ++A+ + Sbjct: 845 DDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLGEGSVDAAITRAIIAMAHGLSLKVVAEGV 904 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + ++ L CD +Q ++ P+ + LL+ + Sbjct: 905 ERQEQLEFLRNERCDEVQGYLISRPVEAEGLAGLLRAQ 942 Score = 133 bits (336), Expect = 1e-28, Method: Composition-based stats. Identities = 59/386 (15%), Positives = 122/386 (31%), Gaps = 43/386 (11%) Query: 185 VNSFTLYRGIIIGVASLLA---IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241 + LY+G ++ +L + + + R + + + W++ + Sbjct: 17 ERTRLLYQGSLLPTLFMLLNGLVCAALLWEPRR--YFLVSVWLVWLLSLVALRVIQVAAF 74 Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301 + L S++ + + + + +S Sbjct: 75 D-SAMPSRQAHPIWLRMFLLGSAMTGLTLAGAGIAL-VPADSFQQQAWVFGLIGAAALSA 132 Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361 + A ++ L I Y G E+ +++ + + + + Sbjct: 133 SVAYAVSLPAFLSFTLPCLL--PAIGYLFWGGDEQQRGWGWLGLIVLVSLSVVAWQVNRL 190 Query: 362 LDNDII------------QPALVGGLVLIVIL--------------------IGFTVIQH 389 + + ++ Q A G L L + V Q Sbjct: 191 IQSGLLRRFQNQALIEHLQQAQTRGAQLNDALAREVEQRRSAEEKLRAAQVGLEARVAQR 250 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 L SQ + R +LA+ S +WDW++ D V T + + GL + + Sbjct: 251 SLELEVASQALSKSEARLALALKASELGLWDWNLQTDEVHHT-QLKELFGLEPEYITAML 309 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGD 508 + P +H D + L + R Q E+RVR D + W+ R R + + +G Sbjct: 310 THLTPRLHPQDLPALKRALVEHLKGRSEDYQIEYRVRHGDGHWVWIEDRGRAVERSVSGR 369 Query: 509 ILRYIGIANDITEQKKSLEGILCNAF 534 +LR +G DI+ K+ + A Sbjct: 370 VLRMVGTRRDISASKELEQQRQLAAT 395 >gi|294632536|ref|ZP_06711096.1| sensory box/GGDEF family protein [Streptomyces sp. e14] gi|292835869|gb|EFF94218.1| sensory box/GGDEF family protein [Streptomyces sp. e14] Length = 713 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 134/575 (23%), Positives = 260/575 (45%), Gaps = 18/575 (3%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448 + A G +Q + + R G+ + D+ + + + + G + +M G Sbjct: 138 LRAQGVVAQALHASEARFRAVFEGAAIGIGIADLEGNILQVNGALLRMFGGSEQTMRGRK 197 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 ++ W H D + + V R E D W + + + +++ + Sbjct: 198 VQEWT---HAEDAPQIWRLYEELVRGEREHYHVEKAFYRPDGTVLWTNLTVSLLRDADNN 254 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + D TE++ + A D LTG+PNR F +RL L+ + + R + Sbjct: 255 PQYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKTLN---SGEGRRFGL 311 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNS 627 +D+D +K IND LG A GD +LV + R+ +++ARL G+ F + ++ Sbjct: 312 CYLDLDGFKTINDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDSR 371 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ + A + ++ PI + RE+TV SIG + +++E+L++A++ MY AK Sbjct: 372 REVDELAARIMNALVAPIRIDGRELTVRGSIGVVEGPVGERSAAEVLRSADITMYRAKSA 431 Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GGN E + + L A++ E ++ Y P++RL D + G EAL++W Sbjct: 432 GGNRFELADPEADARAITRHGLTTALPAALDRGEFFIEYQPLVRLGDGSVRGAEALVRWL 491 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP---PIFILINIAS 802 HP+ G + F+ +AE +I + +++E+ R WR+ + I +N++ Sbjct: 492 HPQHGVLGPDRFIPLAEHTGLIVPLGRWVMEQSVRQAGKWRELYGDGAEGSLRINVNLSP 551 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L L + ++ +T +P + L +ES ++G + L RL ++G+ + LDD Sbjct: 552 CQLQHPGLVQDTVDILERTGVAPDALCLEVTESALIGADDDVLKPLHRLAEMGVDIALDD 611 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKD 917 FGT S L+ L +P +K + S + I+ I+ +A +++ + + Sbjct: 612 FGTGYSNLANLRRLPVSVLKLDRSFTRSMQQFPADPVDLKIVEGIVALAHSLDLAVTVEG 671 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + ++L +GCD Q + A P + + +L Sbjct: 672 VETGAQAEQLRILGCDTAQGWYYARPGPPDRLHEL 706 >gi|285017582|ref|YP_003375293.1| two-component system sensor protein [Xanthomonas albilineans GPE PC73] gi|283472800|emb|CBA15305.1| hypothetical two-component system sensor protein [Xanthomonas albilineans] Length = 716 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 146/584 (25%), Positives = 275/584 (47%), Gaps = 25/584 (4%) Query: 388 QHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + +D ER+ + + + V D R ++ P I G + + Sbjct: 146 RLAGTARDITSHRQADLERRIAAEVLRSMSEAVAVLDEERRFISVNPAFTRITGYSEREV 205 Query: 446 HGPIRNWLPY---IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + + + + R + + R D +R + Sbjct: 206 LGQPMTLIDHAPNVPP----------PPMLDQGR-HWRGDAWKRRKDGHEILCHMRRNTV 254 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +++G + + DITEQK++ + + A D LT +PNR +RL + + Sbjct: 255 VDADGRQSFQVVVLEDITEQKRAEQELRYLANYDTLTSLPNRALLSERLARAIVRARRQA 314 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 V+ +D+D++K IND G VGD VL ++ R+ + + +ARL+G+ F +++ Sbjct: 315 GA-VAVLFLDLDRFKDINDSQGHPVGDQVLRAVAERLQQAVGPQHTVARLAGDEFTVVVE 373 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + + P+ L +R E+ V+ SIG + + + SE+LK+A+ AM Sbjct: 374 DIVSQDEAESVAARVLAAFEPPLRLDDRREVAVSTSIGISLFPQHALLPSELLKHADTAM 433 Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G + + + + R + L + EL LVY P L ++ +V +E Sbjct: 434 YQAKAAGRRNAQVYSASMDEATRHRATLASTLRKIPLDQELKLVYQPRYSLREQRVVSVE 493 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W +G +S S+F+ +AEE +I I ++L + + WR Q + + + IN Sbjct: 494 ALLRWHSADFGPVSPSQFIPLAEETGLILQIGEWVLRQACSALRDWR-QMGLTDLCMSIN 552 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++ L + L E M ++++T + ++L +ESVVM +S +L R++G++L Sbjct: 553 VSAIQLERSNLPELMAQILAETGVPAANVELELTESVVMSQVGKSAEILHACRELGLTLA 612 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL +P +T+K + + ++ +I +II M +++ ++A+ Sbjct: 613 IDDFGTGYSSLAYLKRLPINTLKIDQAFISDLSLDPDDASITSTIIAMGHSLDLKVVAEG 672 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE--RFPL 959 + + L GCD IQ VA L ++ LKLL++ R P+ Sbjct: 673 VEQPSQLMFLREHGCDEIQGHLVAPALEPDACLKLLQQPLRLPI 716 Score = 88.1 bits (217), Expect = 7e-15, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 18/175 (10%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + A+ G V + L+ +Q L + + LA+ SG+ WD+D+ Sbjct: 4 LSLAIGGLTVALHALLYRRRMQQKLKCY---EELQQHEHYLKLALWASGEHFWDYDLQNR 60 Query: 427 RVT------TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 + P + I ++ + L IH +D + L + Sbjct: 61 TLRRMRADDANPHLQDI------ALVIHEDDPL-RIHPDDIQQAKLALSEHLEGLTAIYL 113 Query: 481 YEFRV-RAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 E+RV D + W +R R + ++ G+ R G A DIT +++ A Sbjct: 114 AEYRVDLTGDGVWRWARVRGRVVDYDAVGNPRRLAGTARDITSHRQADLERRIAA 168 >gi|157962414|ref|YP_001502448.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC 700345] gi|157847414|gb|ABV87913.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella pealeana ATCC 700345] Length = 1436 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 129/561 (22%), Positives = 265/561 (47%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V + ++ + G + N+ ++ Sbjct: 873 QAEEQLRLFERAIQNISEGMFILDRNFKFVEVNEACCDLSMMSKNELIGTLFNF--DLYP 930 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + ++ + S + + GR E + M + + + + G++ ++G+ +D Sbjct: 931 D---SYSEQIRSILKQQ-GRWNNEVESIRGNGSSFLMELSVDAIYDEQGELSHFVGVFSD 986 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ++ +K+ E + D LT +PNR + + L ++ + T+MV+D+D +KK Sbjct: 987 VSRRKQQEEELRKLTNNDLLTNLPNRSNLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1041 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD++LV ++ RI + + RL G+ F I++ + A A + Sbjct: 1042 INDSLGHQAGDELLVQVSERIQVAVPSHTSIYRLGGDEFAILVDKNPDIGTSAIIAKNVI 1101 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + L ++ V SIG + +L+ A++AMYHAK GGN + + S Sbjct: 1102 HAFEASFELSSEKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1161 Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ ++ + + +++ + Y P + L + G+EAL++ +HP+ G I+ +E Sbjct: 1162 LNKNAIRQLEVENLIRDGLKDDLFEVYYQPKVDLKTGHMAGMEALVRLNHPELGLIAPNE 1221 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L++ WR Q + +N++SK +L + +++ Sbjct: 1222 FIPLAEENGLIVEIGDVVLKKACFAAQKWRSQGLFNG-RVAVNLSSKQFALPDLQQRVES 1280 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE++ ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1281 ILRLTQLPAANLELEITEGTVIKEPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1340 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1341 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEDASQLSILRALKCEE 1400 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + P+ + LL++ Sbjct: 1401 IQGYIFSKPVTESKFTLLLQQ 1421 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 3/169 (1%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + A L+ + I +I+ +L + I ER L++ GSGD +WDWD Sbjct: 713 PWWLSITAKFIYLLCFIF-ISILIIKTILRRREIQRQIAKSEERLKLSLWGSGDEMWDWD 771 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I ++ + + L IH D++ R L+ + Sbjct: 772 IETGQIYRSNIWGS-LEFPQDGQRSGNNGEESNIHPMDQERVREALNKHFYGETDHFEAA 830 Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 +RV+ N + W++ R + + + N + LR G +I+ K++ E + Sbjct: 831 YRVKGKSNDWVWILDRAKIVERDENDNALRMTGTIKNISNFKQAEEQLR 879 >gi|192359360|ref|YP_001982537.1| sensory box protein [Cellvibrio japonicus Ueda107] gi|190685525|gb|ACE83203.1| sensory box protein [Cellvibrio japonicus Ueda107] Length = 844 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 134/575 (23%), Positives = 247/575 (42%), Gaps = 13/575 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + E + ++ +I + +A LG M Sbjct: 263 LAKRRAVELALRKSEEHLRQIIDHLPVMIGARNIAGYYLFANKALANELGYTPEQMRNLH 322 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L + D D + E R A + ++ I P++ + + Sbjct: 323 VRQLLKNSVFDIDTMLQNDYRVIRGNEELDVIEERFITASGKQLFLQTHIMPLAFYDEKV 382 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + + DITE+K + + A D LTG+PNR ++RL L + V+ Sbjct: 383 ALIVSV--DITERKNAQAKMEFMAHHDALTGLPNRVQLVERLEHELRRAERH-GYYGAVL 439 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----E 624 ID+D++K IND LG VGD VL + R+ + ++ D++ARLSG+ F ++L E Sbjct: 440 FIDLDQFKNINDSLGHPVGDKVLEVVATRLQQSVREEDLVARLSGDEFVVVLTVLDQNME 499 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 +L+ + + +R I+ P E+ VT S+G + + E+L+ A+ AMY Sbjct: 500 TAALRAGEISEKIRSIISQPYVYDSMELRVTCSVGVVVYPDKNNSVHELLRYADTAMYQV 559 Query: 685 KHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +G + +E F + + DL A+E + L Y P + ++ +VG EAL+ Sbjct: 560 KEKGRDSIEFFNEEMADKVSRQLVMEGDLHRALEEGQFELYYQPKMDVISSRVVGAEALL 619 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIA 801 +W HP G +S +F+ + E MI + ++LE + ++ W +Q + + INI+ Sbjct: 620 RWKHPTKGMVSPVDFIPVLETSGMIIDVGQWVLEDACKTLVKWSEQGLWHEGMKLSINIS 679 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + I + P+ + + +E +V+ E + + L GIS +LD Sbjct: 680 PRQFRRAAFVQDVIDTIERFPIPPNSLDMEITEGIVIQRVEDAIATMTLLSDKGISFSLD 739 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S +SYL +P T+K + + ++ +II M ++ ++A+ + Sbjct: 740 DFGTGYSSISYLKRLPVSTLKIDQGFVRDIIVDRNDRVLVETIITMGNLLDMELVAEGVE 799 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L GC + Q + P+ +L+ Sbjct: 800 EAEQLAILKAFGCHFYQGYLFSMPVELAVFESILR 834 >gi|229136697|ref|ZP_04265356.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] gi|228646767|gb|EEL02943.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] Length = 797 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 160/760 (21%), Positives = 306/760 (40%), Gaps = 32/760 (4%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 IF++ + + ++ + + G + ++ Sbjct: 53 IFFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLYIFIIVLAGLAITD 108 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY---------YPMVTASIARITLASI 318 +L+ YL + + V + + + + Y ++ + + L Sbjct: 109 YLYFYLQDDLSNRSVILLRCLYRVFLLFIAIAAAIPKNASSRRNYFIIDPTFGKKLLVIF 168 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I K + LI + F++ + + + + L L + Sbjct: 169 PYLAVTILIGFTFKEQTSSATLITGNCIAFVFVLIRHTIVRMQNRD------LTEMLKVF 222 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + V Q S + + ER D + D + + +L Sbjct: 223 NNQLEQKVSQRTEDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQAGSMLL 282 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII- 497 G S + G DR L LQ RV+ + + Sbjct: 283 GKNSDELIGKEC--FSIFLDEDRSELEAALKQGKRCSSASLQL--RVKNNNGKDIHFWYV 338 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 I P+ G + DIT+ ++ + I AF D +T I NR F L ++ Sbjct: 339 TIVPIM-IEGQPFGSYVMVKDITKMRQQQDEINYLAFHDTVTKIGNRTFFQQELEKSIER 397 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 398 AQKTQD-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEF 456 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 II+ + ++ ++ D + + P + + ++ SIG A + + +L++A Sbjct: 457 AIIVHN-HSEQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGTNITTLLQHA 515 Query: 678 ELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY+AK +G N V + S + R+ +++DL A+EN EL+L+Y P + ++ Sbjct: 516 DIAMYNAKKKGNNAVCMYDETLSKRITRRLRLEQDLPNALENDELFLLYQPQVDSKTGKV 575 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G EALI+W HP G IS EF+ IAEE I + ++L+ R + W + Sbjct: 576 IGAEALIRWQHPGLGLISPFEFIPIAEETSQIIPVGKWILQEACRQLKKWHSA-GYANLK 634 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + IN+++ + + + +++ I S I L +E + M + + + L L+ G Sbjct: 635 MGINLSAIEFEQKDFVQTIKSTIEGVGVPASSIDLELTERIAMVDEKETLSKLKVLKSYG 694 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 + L++DDFGT S L+YL P DT+K + + I+ +II +A ++ + Sbjct: 695 VHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFINRIGTSNDGNEIINTIISLAHTLKMKV 754 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 IA+ + + + L R C IQ + + PL + +K L Sbjct: 755 IAEGVETKEQLTVLQRNECYLIQGYYYSKPLNEDEFIKFL 794 >gi|330957433|gb|EGH57693.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 757 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 155/716 (21%), Positives = 294/716 (41%), Gaps = 56/716 (7%) Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 W + + A L +S Y +V A +IY ++G+ Sbjct: 54 WEPIARFGSSCPEADETWLRMVSSYGDVVLVGQDSPASAIDRSAGGRTLIYVAIRGFR-- 111 Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397 +G + + + ++ + Sbjct: 112 -----------HELLGAMLLSNSSPQSGLSPAQRYALQAQAALVRTHLQPEREHEASNPL 160 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVR------DRVTTTPDIATILGLASGSMHGPIRN 451 G F V+ + D + D V P I G + G Sbjct: 161 VGSFERLRLLESVVINANDAILITDAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPR 220 Query: 452 WLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 L D ++ + + R ++ E D W+ + I P++N G Sbjct: 221 ILQC---EDTSRETLDVIREALTHWR-PVEVELLNTRKDGSQFWVELSIVPVANEKGWFT 276 Query: 511 RYIGIANDITEQKKSL--------EGILCNA-------------------FQDNLTGIPN 543 ++ + DITE+K+S E A F D LT + N Sbjct: 277 HWVSVQRDITERKESQQLTQRARQEREEKLALQSRLEERERISEALAYVAFHDELTSLHN 336 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R ++ LT + R TV+ +D+D +K +ND +G GD +L + R+ + Sbjct: 337 RAYLMNELTRAFETLDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQMCV 395 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 + D+LAR+ G+ F I+L+ ++ A + + + + ++I ++ SIG + Sbjct: 396 RSNDVLARIGGDEFAILLMGKDQPDTAVKMAERIVSQLHTALQIEGQDIFISCSIGIVTA 455 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELY 721 S E+L++A++AMY AK +G F S D ++I+ L A+E+ + Sbjct: 456 GESHTKPEELLRDADVAMYSAKKQGRGRWSIFNASMREAAIDTLVIQNALRQALEDKDFL 515 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 + Y PI E +VG+EAL++WDH G IS F+ IAE+L +I + +++ R + Sbjct: 516 VFYQPIYSGSSEHLVGVEALVRWDHASMGIISPEAFIPIAEDLGIIHELGAWVMHRSCSE 575 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 + +WR + + + +N++ K+L E + +I+ T +++++ +ESV + P Sbjct: 576 VQAWRKAFSHLDLRLSVNVSGKELSHPGFVEQVTRIIASTGLPATQLQIEVTESVFLYQP 635 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAIL 899 + +L ++R++G+ + LDDFGT S L Y+ P D VK + S ++ E+ AI+ Sbjct: 636 DAIAEILRQIRQLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAIV 695 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 SI+ + + + I A+ + L ++GC Y Q + P+ ++L++++ Sbjct: 696 SSILSLGRALNLDITAEGVETAEQYNRLRKLGCPYFQGYLLNRPMRSEALLRIIRS 751 >gi|115524343|ref|YP_781254.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] gi|115518290|gb|ABJ06274.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 834 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 134/564 (23%), Positives = 258/564 (45%), Gaps = 22/564 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGP--IRNWLPY 455 + L + +W +D + G + + G W Sbjct: 277 SLKRREASFRLLFDNNPMPMWVFDAATTRFLKVNDAAVRHYGFSRSAFLGMKLPEIW--- 333 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 ++R+ L +R AD +I R ++ ++ Sbjct: 334 -PADEREAHLHALQQA--GDNYLSDRNWRHLKADGSEIEIIAFGRRVAFE--RSDGFLVA 388 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D+TE++K+ I A D LT +PNR + +RL L+ A V+ +D+D Sbjct: 389 IVDVTERRKAEARIAHMAHHDGLTNLPNRSFYQERLQHALE--ARPAECHVAVLCVDLDL 446 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND G VGD +L + R+ ++ +++ARL G+ F I+L+S + + +DFA Sbjct: 447 FKNVNDSFGHPVGDRLLQLVAERLRLEVRGANMVARLGGDEFAIVLVSVVSPNEASDFAA 506 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + +++P ++ E+ + ASIG A ++L+NA++A+Y AK GG + F Sbjct: 507 RVIERLSVPYDVDGLEVVIGASIGIALSPGDGDNGEDLLRNADMALYRAKESGGGNHHFF 566 Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + R ++ DL A + L Y P++ + + + G EAL++W HP+ G IS Sbjct: 567 EKEMDRQAQKRRDMEIDLRYAFAKGQFELYYQPLVDVARDRVAGFEALLRWRHPERGMIS 626 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 ++F+ +AE++ +I + ++L + + +W + I I +N++ L + Sbjct: 627 PADFIPVAEDIGLIVGLGEWVLRQACAEAATWPSE-----IKIAVNLSPVQFRSRNLVQA 681 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++++ SP R++L +ESV + E + L ++R +G+ +++DDFGT S LSYL Sbjct: 682 VIGALAQSGLSPRRLELEITESVFLAETEANLATLHQMRDLGVRISMDDFGTGYSSLSYL 741 Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PFD +K + S + +AI+R+I + +++ T A+ + + + L G Sbjct: 742 RSFPFDKIKIDRSFVQDLAQRPDCLAIVRAIAGLGRSLNITTTAEGVETQAQLDWLREEG 801 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C+ +Q + I L+ Sbjct: 802 CNEVQGFLFSPARPAGEIAALIAR 825 >gi|17548475|ref|NP_521815.1| hypothetical protein RS03712 [Ralstonia solanacearum GMI1000] gi|17430722|emb|CAD17405.1| probable signal transduction eal-ggdef domains transmembrane protein [Ralstonia solanacearum GMI1000] Length = 1178 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 142/584 (24%), Positives = 257/584 (44%), Gaps = 24/584 (4%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATI 437 + F +Q + + + V + D + V P + Sbjct: 604 VALFGTMQDITERRESDEQLRL----LRRVVESVPSGITVADAQQPDLPLVYVNPGFERM 659 Query: 438 LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 G + + G +L + R L ++ R D Sbjct: 660 TGYRAEEVLGRNCRFLHSSEPGQPALNEVRAALRDASE-----IRVLLRNFRKDGHAFLN 714 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ +S G + Y+GI +D+TEQ+ + + +A D LTG+PNR DR+ + Sbjct: 715 NFLLSPVRDSQGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQGV 774 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +++A R V +I+ID++K +ND LG +GD+VL + R+ + D +AR G+ Sbjct: 775 EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 833 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +++ + F A PI + E+ VTASIG A + + S +++ Sbjct: 834 VFALVISHAGSHGTDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGSDSETLVR 888 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AE+AMY AK G N +E F S R+ ++ + A+E + L+Y P I Sbjct: 889 HAEMAMYFAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEQGQFRLLYQPQIDTKTG 948 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I GLEALI+W HP G + + F+ +AEE ++ I ++L A+ +W + Sbjct: 949 RICGLEALIRWIHPTRGLLPPAAFIPVAEESGLVVEIGNWVLAEAAQQRAAWHARGLGED 1008 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + I +N++ + + L + ++L +ES++M ER+ L +R+ Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+YL +P D +K + + + AI +++ +A N+ Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + L CD +Q + + PL ++ LL+ Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPEAVTALLER 1172 Score = 91.6 bits (226), Expect = 6e-16, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 6/165 (3%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 GG + L+ T + A + + ER + D ++DWDI Sbjct: 333 QGGARDELSLLERTFNEMRTAILRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392 Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + +LG + + ++H D F L + + R + RV Sbjct: 393 ASLHRLLGSDALLAQGDEDGVSRTLTFQQFVHPEDMAAFGRGLRAALHSDRDAWHHVCRV 452 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 A + IR +G +R +G DI+++ + Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAVRMVGGVTDISQRSAMEADLR 497 Score = 74.6 bits (182), Expect = 8e-11, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 2/141 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + +A + W WD++RD T + + + G++ G Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSSGMYLLTGVSPG-PPPSFAQ 546 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R V E + D + W++ R N +++ Sbjct: 547 QAQFFTGDSYNRLREAASRAVTE-GVPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605 Query: 512 YIGIANDITEQKKSLEGILCN 532 G DITE+++S E + Sbjct: 606 LFGTMQDITERRESDEQLRLL 626 >gi|331015153|gb|EGH95209.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 674 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 141/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%) Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453 ER L V+ + D + D+ V P I G + G L Sbjct: 80 SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 139 Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D ++ + + R ++ E D W+ + I P++N G + Sbjct: 140 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 195 Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545 + + DITE+K + E + AF D LT + NR Sbjct: 196 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 255 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 ++ L R TV+ +D+D +K +ND +G GD +L + R+ ++ Sbjct: 256 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 314 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D+LAR+ G+ F I+L+ ++ A + + I + ++I ++ SIG + Sbjct: 315 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 374 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723 ++L++A++AMY AK +G F S D ++I+ L A+EN + + Sbjct: 375 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 434 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI E +VG+EAL++WDHP G IS F+ IAE+L +I + +++ + D+ Sbjct: 435 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 494 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 +WR + + +N++ K+L + + +I+ T +++++ +ESV + P+ Sbjct: 495 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPAAQLQIEVTESVFLYQPDA 554 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901 +L ++R +G+ + LDDFGT S L Y+ P + VK + S ++ ++ AI+ S Sbjct: 555 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPINAVKIDRSFVSRMMTYDRSQAIVSS 614 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ + + ++ I A+ + L +MGC Y Q + P+ ++ +++ Sbjct: 615 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 668 >gi|329902598|ref|ZP_08273159.1| signal transduction protein [Oxalobacteraceae bacterium IMCC9480] gi|327548706|gb|EGF33349.1| signal transduction protein [Oxalobacteraceae bacterium IMCC9480] Length = 496 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 143/496 (28%), Positives = 249/496 (50%), Gaps = 7/496 (1%) Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 +G Q E + + + + + ++ G I +I ++ DI+E+K S + I Sbjct: 2 RHATTVKGSWQGEVWFNRKNGIAYPAWLVMNAVRDAGGVITHFIAMSLDISERKASEQRI 61 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+PNR S +RLT + + ++ R V+ +D+D++K IND LG VGD Sbjct: 62 HYLAHHDALTGLPNRFSCDERLTLSIQQARRQND-RVAVLFVDLDRFKNINDSLGHHVGD 120 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK-SIAMPINLL 648 +L S+ R+G ++ D ++RL G+ F +IL + + +I ++ P + Sbjct: 121 QLLCSVAARLGAAVRDGDTVSRLGGDEFIVILNNIDQVEEIGKLIERRLMPAVCEPHCIE 180 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVM 706 E+ V+ SIG A + T + ++A+ AMY AK G N+ + F + + + Sbjct: 181 SAELYVSCSIGVAVYPDDSDTIGGLKRHADSAMYQAKKLGRNNAQFFTPALNERVTRHLH 240 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ DL A EL L Y P I + G+E+L++W HP G I+ + F+ +AEE + Sbjct: 241 LESDLRHAAGRDELVLHYQPRIDARSGRLAGVESLVRWQHPVEGLIAPALFIPLAEESGL 300 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I + + R +WR Q I + IN+++ L D++L + A I++ P Sbjct: 301 IVGIGAWTIREACRQHQAWRLQGLG-AIPVSINLSALQLRDDDLLAVLAAAITRYDVPPG 359 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 +I+L +ES++ N + + +LL RL+ +G SL++DDFGT S L+YL P D +K + S Sbjct: 360 QIELELTESLLTENVDATIVLLKRLKTLGFSLSIDDFGTGYSSLNYLVRFPIDKLKIDRS 419 Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + A+ R+II + + ++A+ + D++ L GCD Q H A P+ Sbjct: 420 FVKDMHSSAANLAVTRAIIGLGHTLGLAVVAEGVELASDVQALLEAGCDEFQGYHFARPM 479 Query: 945 GFNSILKLLKERFPLV 960 ++ L P+ Sbjct: 480 PAAQLVAWLGRHTPVA 495 >gi|71278233|ref|YP_271340.1| sensory box/GGDEF family protein [Colwellia psychrerythraea 34H] gi|71143973|gb|AAZ24446.1| sensory box/GGDEF family protein [Colwellia psychrerythraea 34H] Length = 682 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 136/552 (24%), Positives = 244/552 (44%), Gaps = 9/552 (1%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + + + D T + I G + + G L D+ ++ Sbjct: 119 EQIFDHTNEAIIVTDNQGLIQTVNKSFSNITGYSEEEVIGKTPAILNS-GKQDKYFYKKF 177 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + G Q E + + + + + I + N I YI DIT +KKS E Sbjct: 178 WQQIIDQ--GSWQGEIWNKRKNGEVYPEWLNISSIRNKESQISNYICQFTDITNRKKSEE 235 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + +A+ D+LT +PNR ++L + L V+ D+D++K IND LG V Sbjct: 236 ELHFHAYHDSLTSLPNRHLLFEKLNHLCVLHQEQPTY-FAVLFCDLDRFKMINDSLGHDV 294 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD++L S+ R L+ DI+AR G+ F +++ E + + + +P Sbjct: 295 GDELLKSVANRFEAKLRDNDIIARTGGDEFIVVIEGEKALKNLDKICLQILSLFEVPFQT 354 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRV 705 E T SIG + + S E++ A++AMY K GGNH F V R+ Sbjct: 355 KYGEFKTTISIGVSQFPSDSEDVRELISFADVAMYKIKKSGGNHYSFFDVKEKALIQQRL 414 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ ++ A+E + + Y P + E+ G+E LI+W+HP+ G I F+ IAE Sbjct: 415 ELESEITQAIEKDQFAVWYQPQVNTQTHEVYGVECLIRWNHPEQGLIPPDLFIPIAEANG 474 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 IK + F+L+ + + WR + + + IN++ + N+L ++ + + Sbjct: 475 SIKELGYFVLKTACQQLRQWRIKNIFTGV-MAINVSLRQFERNDLLAQVKKTLVDEMLPA 533 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 I+L +ES+ + +L LR++G+ + +DDFGT S L L +P D VK + Sbjct: 534 ESIELEVTESLFSEDNNYHTPILCALRELGVKVAIDDFGTGYSSLQRLKSLPIDNVKIDK 593 Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + + +AI+ + I ++K + +IA+ I + +L+ +GC Q + P Sbjct: 594 CFVDNIEHCPEDVAIVMATILLSKTFKVDVIAEGIETQEQADKLSDLGCFNQQGYLYSRP 653 Query: 944 LGFNSILKLLKE 955 L + L + Sbjct: 654 LKAHDFEVWLAD 665 >gi|85373314|ref|YP_457376.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594] gi|84786397|gb|ABC62579.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594] Length = 783 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 160/719 (22%), Positives = 308/719 (42%), Gaps = 31/719 (4%) Query: 251 LIWRACSEIALSSSLIIFLFM-YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309 + I L+ +L IF +L + A + L +++ V Sbjct: 70 WLTVLGWAIGLALTLSIFTSQDWLLRKADGRTLSQREAFRHASGSALVAIAWAAQPVLHW 129 Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369 + + + ++ + I+ + + Q Sbjct: 130 LYGTPTSMLQ--AWLIVMVVTLGSSLALAAAPLGAIIYIATTSMTAIVVFGLAG----QY 183 Query: 370 ALVGGLVLIVILIGFTVIQHV---LATGYFSQGIFSDGERQSLAV----LGSGDIVWDWD 422 +L +++I + V Q L G+ E SL + D +W D Sbjct: 184 PPAVAALLYMLVILWGVYQRAEAFLRQSAAEAGMNERNEVVSLLLREFEENEADWLWQID 243 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD--NFRTILDSFVGY--RRGR 478 R + +P A LGL G G +L I + F T L R+ Sbjct: 244 TQRKVRSVSPRFAFALGLEPGEADGMP--FLQLIAGDAWKTGQFPTSLHDLAERLKRKES 301 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + D W + PM + G + Y G+ +D+TEQ++S E I A D L Sbjct: 302 FSNLLVKVSIDGVTRWWELSGTPMLDEEGKYVGYRGVGSDVTEQRESSEKIAYLARYDTL 361 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 T +PNR + L + + R M+ID+D++K +ND LG GD++L ++ R Sbjct: 362 TELPNRLMVNESLGEAMKYAKQ-WRSRCAFMMIDLDRFKAVNDSLGHQTGDELLAEVSGR 420 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + +L ++ RL G+ F I++ + + A + + ++ P + + V AS+ Sbjct: 421 LKSILSENEMCGRLGGDEFAIVIRDVKDRDYVDTVARRVIEHLSQPYEVNHHMLYVGASV 480 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVE 716 G A + E+++NA+LA+Y AK GG + S +R ++ L +A++ Sbjct: 481 GSAIAPRDGRSVEELMRNADLALYRAKDLGGGEHFQYEPSLHKSAEERRQLEFSLRMALD 540 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 E L Y P++ DE I+ EAL++W+ + G +S ++F+ +AE+ +I I ++LE Sbjct: 541 RQEFELAYQPVVDANDETIISFEALLRWNSAEHGFVSPAKFIPLAEDTRLIVPIGSWVLE 600 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 + + +W D P+ + +N++ + L++ + + +S + +R++L +ES+ Sbjct: 601 QACIEAANWPD-----PVKVNVNVSPEQLVEPDFVATVVRALSTSGLPANRLELEVTESI 655 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TE 893 + + + L + +G + LDDFGT S L YL + F T+K + + G+ ++ Sbjct: 656 FVRDALVAGKALKEVMHLGCQVALDDFGTGYSSLGYLRQLSFSTIKVDRMFVQGAAQGSK 715 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + +AI+R+++ MA +++ T A+ + + + + +GC IQ + P+ KL Sbjct: 716 ESLAIIRAVVAMADSLDMTTTAEGVESFEEAELIRELGCTKIQGYYFGRPMVKAEARKL 774 >gi|330975734|gb|EGH75800.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 624 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 138/585 (23%), Positives = 266/585 (45%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 41 MLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 100 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L + + D + + E ++R Sbjct: 101 CQLLGYTAEELSHKTPAELG---ETSMEKLEVVYDRIIAGKGPSEPLETQIRDKSG--RD 155 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LT +PNR F L Sbjct: 156 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTSLPNRDLFFTSLQMG 215 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + I++D +K IN+ G +GD+VL+ ++RR+ L D L R+ G Sbjct: 216 MTQAAIS-RWKLAALTINLDDFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 274 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ + + +R ++ +P ++ + + +TASIG A + S E++ Sbjct: 275 DQFAMILMLRDGQAGTRETLERIRNALRVPFHIEGQSLVMTASIGIALYPEDGEDSRELI 334 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM A+ G ++ + R+ ++ L AV N +VY P + L + Sbjct: 335 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 394 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + I GLEAL++W P +S + F+ + E L +I + ++++ + I W+ Sbjct: 395 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 453 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + ++ L ++ + K +P +++ +ES +M N + LG LR Sbjct: 454 SFQVAVNISGQQISNSSLVADIRQALEKHNVAPHWLEVELTESSLMENTAHTIATLGALR 513 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 514 ASRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 573 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + + L+ Sbjct: 574 LLVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLDELETFLRS 618 >gi|149173557|ref|ZP_01852187.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Planctomyces maris DSM 8797] gi|148847739|gb|EDL62072.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Planctomyces maris DSM 8797] Length = 572 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 150/554 (27%), Positives = 261/554 (47%), Gaps = 13/554 (2%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + AV +G + + D + + I G + G L + + Sbjct: 11 LQAFRDAVDEAGIVAIN-DTKGRILDVNDNFCQISGYTREELIGSDHRILRS-DQHSNEF 68 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 FR + + + + E +A + + +W+ I PM N G I Y+ + DI+EQK Sbjct: 69 FREMYRTIRRGKT--WRGEICNKAKNGRLYWVNTTIVPMFNDQGKIDGYLALRIDISEQK 126 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + ++ + A D LTG+PNR S L+ + ++D ++ +D D++K IND L Sbjct: 127 RLMQRLQHLAHHDPLTGLPNRVSILESIQKVID---RKSGKHFALLFMDFDRFKLINDSL 183 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDIL--ARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G VGD +L ++ R+ + ++ D + ARL G+ F ++L + ++ + +++ Sbjct: 184 GHDVGDKLLEAIADRLRKTVRASDTIQAARLGGDEFVVLLENLHSPDDAILVGNRLLETL 243 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSS 699 + P L I +ASIG + T+SEML +A+LAMY AK + V + Sbjct: 244 SRPYILGGYTIYSSASIGIVTSEHRSETASEMLSDADLAMYEAKAAKQDRPIVFDRVLRD 303 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 R+ I+ L + EL L Y PII L E+ G+EALI+W HP+ G I EF+ Sbjct: 304 KAQKRLYIENQLRDVISRDELKLFYQPIIDLESGELRGVEALIRWFHPECGMIPPDEFIS 363 Query: 760 IAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE+ MI + F+++ R + +WR P + +N++ K L L + + Sbjct: 364 VAEEMDMIIPVGNFVVDEACRQLAAWRKTLGPQAPENLHVNVSRKQLEHPTLVSIVAEAL 423 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 K + L +ES++M + E S L L+K+G+ L +DDFGT S LS L P Sbjct: 424 EKHEIPAKCLHLEVTESIIMHDREASIETLNDLKKLGVKLDVDDFGTGYSSLSCLCDFPI 483 Query: 879 DTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 D +K + + S R ++ ++I +A+ + +I + I ++ L +GC Q Sbjct: 484 DVLKLDREFIKRSDRDREVLLIHALIILAEKLGLEVIGEGIENIEQLQLLQGLGCRLGQG 543 Query: 938 SHVASPLGFNSILK 951 + P+ + I + Sbjct: 544 YFYSKPICGDEIEE 557 >gi|104784397|ref|YP_610895.1| sensory box protein [Pseudomonas entomophila L48] gi|95113384|emb|CAK18112.1| putative sensory box protein [Pseudomonas entomophila L48] Length = 977 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 132/564 (23%), Positives = 259/564 (45%), Gaps = 13/564 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E+Q LA + + + + + G + LP Sbjct: 413 ARKEQEEQQRLAATVFEAASEGIAILGADYQLLAVNQAFCDVTGYGRAELIARNALELPC 472 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 D +D + G Q E + + + +++ + ++ G I+ +G Sbjct: 473 --SRDARRHSQAIDQALEQHGG-WQGELVEARKNGELYPQWLQLNSVRDARGRIVNIVGF 529 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D++ +++S E + A D+LTG+ NR F RL + ++ +D+D+ Sbjct: 530 FTDLSARRESEERLRYLAHYDDLTGLANRALFRLRLHDAAQRLRLNGR-SLALLHVDLDR 588 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +N+ LG + D++L + +RI + D +ARLSG+ F I+ N + Sbjct: 589 FKLLNESLGHELADELLKKMAQRIANAVPEADTVARLSGDEFAILFDGYTNLSSLVRVTT 648 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + +P L E+ V+AS+G + + + ++ A++A HAKH GG++ + + Sbjct: 649 RLLDKLRVPQRLGGHELVVSASVGISVLADASFDINALVSQADMAKQHAKHLGGDNFQFY 708 Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 S S R+ ++ L A++ +L + Y P + L ++ EAL++W HP+WG + Sbjct: 709 TESLRASTLERLQLENQLRKAIDEGQLLVYYQPKLCLRTGQLHAAEALVRWQHPQWGMVP 768 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ +AEE +I + F+L + W Q + + +N++ L +L Sbjct: 769 PGEFIGLAEETGLIAPMGEFVLRQACWQACEWLRQGLE--VRVSVNLSVYQLRQGKLVSL 826 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ ++ ++ +P ++L +ES ++ + E +L +G+ L +DDFGT S LSYL Sbjct: 827 VRQVLQESGLAPHLLELELTESQLLDSVEHIIATFEQLHALGVKLAIDDFGTGYSSLSYL 886 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P D VK + + + G + AI R+II MAK+++ ++A+ + + L G Sbjct: 887 KRFPVDYVKIDQAFIRGLLEGSQDAAITRAIIAMAKSLQLKVVAEGVETLEQLAFLREHG 946 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 CD +Q ++ P+ ++ LL+ Sbjct: 947 CDEVQGYLISRPVDADAFQALLER 970 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 64/383 (16%), Positives = 132/383 (34%), Gaps = 37/383 (9%) Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMV-NRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243 + LY+G ++ +L L +++ + + L+ M W++ + Sbjct: 48 ERTRLLYQGSLLPTLFMLITGLLSAWLLWSPARYLLVGVWMTWLLALVALRVIQVAAFDA 107 Query: 244 -NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 + WR + S + + ++ + + + +S Sbjct: 108 APPGRQAMPTWRRMFLCGSAFSGLTLASAAIAL---VPVDNFVQQAWVFGLLGTAALSAS 164 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV----LLIPAWILIFIWFI--GLWM 356 + A ++ A L ++ G++R L++ +++ W + + Sbjct: 165 VAYAVSLPAFLSFALPCLLPPIVFLFVYDTGHQRGWGWLGLILLGALMVVAWQVNRLIER 224 Query: 357 AITKRLDNDIIQPALVG------------------------GLVLIVILIGFTVIQHVLA 392 + +R N + L L L + V Q Sbjct: 225 GLLRRFQNQALIEHLQSAQRHGADLNHQLSAEVRQRRQAEEELRLAQAGLELRVAQRSHE 284 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 +Q + ER +LA+ S +WDW++ D V T + T+ GL S + + Sbjct: 285 LDLANQALSKSEERLALALEASELGLWDWNLQTDEVHHT-QLQTLFGLDSDQVRSVRADL 343 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILR 511 P +H +D R L + R + E+R+R + W+ R R + +S+G + R Sbjct: 344 KPRLHPDDLPLLRRTLVEHLKGRTEDYRVEYRIRHVQGHWCWIEDRGRAVERSSDGKVTR 403 Query: 512 YIGIANDITEQKKSLEGILCNAF 534 +G DIT +K+ E A Sbjct: 404 MLGTRRDITARKEQEEQQRLAAT 426 >gi|54296012|ref|YP_122381.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris] gi|53749797|emb|CAH11177.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris] Length = 976 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 139/576 (24%), Positives = 268/576 (46%), Gaps = 11/576 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ ++ + + + + A+ S +V D + G + Sbjct: 407 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 466 Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G R ++ + + E + + W+ I P+ N Sbjct: 467 LGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 522 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 N +I Y+ + D+T++K E + A DNLT +PNR +++L + S ++ Sbjct: 523 ENEEITHYLAVMEDVTQKKSYEEMLKYQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 581 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D++K+IND LG AVGD +L +L+ R +++ D +ARL G+ F +IL + Sbjct: 582 KLAVLFLDLDEFKQINDSLGHAVGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 641 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A R+ + P + +E++V+ SIG A + + +++NA+ AMY + Sbjct: 642 MQDKDAESIAKKCREICSQPFVIESQELSVSTSIGIAIYPDHGKDAKTLMRNADTAMYQS 701 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG N+ F+ + ++ + IK +L A +ELY+ Y PII L ++V EAL+ Sbjct: 702 KIRGKNNWTVFQNTMIEGANNHIRIKTELHQAFTRNELYICYQPIIDLKKNKVVAAEALL 761 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G I+ + + +AEE MI + ++L+++ W I + +NI++ Sbjct: 762 RWQNTTLGQINPDQIIPLAEETGMIIPLGYWILDKVCAQAKEWEFITG-SKIKLAVNIST 820 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + +Q ++ +T S + +ES + + + L +L +GI +LDD Sbjct: 821 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDMGIHFSLDD 880 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FG S L Y+ PF +K + + + ++++ SII MA+N++ ++IA+ I Sbjct: 881 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNELSLINSIITMARNLKLSVIAEGIET 940 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ + M CD +Q + + PL + L L + Sbjct: 941 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFFLMNK 976 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I + Q + + + ER + D ++ ++ + L Sbjct: 283 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVSDGIFIHNLQGAFLEVNEAACLSLN 342 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498 + + + + L+ ++G + E R D + +R Sbjct: 343 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTTFPVDVR 396 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + N+ G+ L + I DIT QK+S I Sbjct: 397 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 428 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 6/137 (4%) Query: 396 FSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 S + +R+ L + +GD V + P I ++ Sbjct: 168 LSLARLMNKKREKLLTTILEKAGDSVEITNEEAVIQYVNPAFENITLYSAREAMNKTVAS 227 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILR 511 L + D F I + + + R R D + I P+ + G I + Sbjct: 228 LLRSPVEDVQLFEEINQTLKSGNT--WKGQIRSRKKDGSYWVAQTIIVPVMDDELGRITQ 285 Query: 512 YIGIANDITEQKKSLEG 528 +I I DITEQ Sbjct: 286 HIAIKQDITEQVHRFNQ 302 >gi|300714960|ref|YP_003739763.1| sensory box protein [Erwinia billingiae Eb661] gi|299060796|emb|CAX57903.1| Putative sensory box protein [Erwinia billingiae Eb661] Length = 992 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 143/529 (27%), Positives = 245/529 (46%), Gaps = 14/529 (2%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + R+ + +LGL M G + D F + S R L Sbjct: 424 VSREILLMNNKAEQLLGLTQQQMSGKKLA--ACLTSEMGDYFTQL--STAAQRFEGLHKN 479 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 ++ + + ++ + IA+D+T+Q+ + I A DNLT +P Sbjct: 480 EQLLNTRGGERIISATASIIRGNDARTNYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 539 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F RL L + + + +D+D +K +ND LG VGDD+L ++ R+ + Sbjct: 540 NRVLFSQRLNEAL-RADREAGKLTATLGLDLDNFKNVNDALGHQVGDDLLRAVASRLRGV 598 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L+ D LAR G+ F I+L + + A + + +P N+ ++V SIG A Sbjct: 599 LRDVDTLARNGGDEFSIVLPGLTHQQEADAIAHRLIEVTKLPFNVDGHNLSVGLSIGIAI 658 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720 T ++L+ A++A+Y AK G N E F V + R MI+ DL A+ + L Sbjct: 659 GGRELATPEQLLRCADMALYEAKRNGRNRFEHFSVQMGEAANLRRMIENDLRDAITHKHL 718 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y PI EI+G EAL++W HP+ G I +F+ IAEE +I ++ + L R Sbjct: 719 RLYYQPITNNHGREIIGYEALMRWHHPEKGLIMPMDFIPIAEETGLIHSLGAYALYEACR 778 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + +W + +N++ ++ L ++A + ++ P R+++ +ESV++ N Sbjct: 779 EAANWPAHQ-----SVAVNLSPLQFKNSSLVSVVEAALKESGLEPGRLEVEITESVLLDN 833 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898 + L +L+ +G+ + LDDFGT S LSYL PFD +K + S + + R AI Sbjct: 834 TLVNIRTLQKLKALGVRIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMKDSREALAI 893 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 +R+I M+++++ I A+ + ++L GC Q P Sbjct: 894 IRAITGMSRSLDIQITAEGVESNEQFEQLKSEGCTLFQGYFFGRPQPPE 942 Score = 63.0 bits (152), Expect = 3e-07, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 8/160 (5%) Query: 381 LIGFTVIQHVLATGYFSQGIFSD-GERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATIL 438 LIGF I +Q E+ L V G D ++ D + V Sbjct: 110 LIGFAKITRDCTEQKAAQAGQRAHEEKFRLLVDGVKDYAIYMLDAEGNVVNWNAGATRSK 169 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMII 497 G + + G + DR + +R GR + + +R R D + + Sbjct: 170 GYTADEIVGKHFSVFYST--QDRLAKVPEANLRTAHRTGRFEEQGYRYR-KDGSAFFAHV 226 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKS--LEGILCNAFQ 535 I + + +G ++ Y I D TEQ++ + F+ Sbjct: 227 VIDAVHDDDGKLIGYAKITRDCTEQQRLLVEQREREQVFR 266 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 6/138 (4%) Query: 397 SQGIFSDGER---QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + ER L V G D ++ D V G ++ + G ++ Sbjct: 252 QRLLVEQREREQVFRLLVEGVTDYAIYMLDPNGLVVNWNAGARRAKGYSADEIVGK--HF 309 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + DR + + GR E D W + I + N +G ++ Y Sbjct: 310 SCFYSAQDRLARLPETNLKLAETSGRFDDEGWRYRKDGSAFWAHVVIDAIHNDSGQLIGY 369 Query: 513 IGIANDITEQKKSLEGIL 530 I D TE ++ + IL Sbjct: 370 AKITRDCTEVREYEQQIL 387 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 3/122 (2%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 L V D ++ G + G + DR Sbjct: 9 YRLLVQSVVDYAIYMLKPDGTVANWNAGAQRAKGYLPDEIVGKNFSLF--YSEQDRAKGL 66 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 R GR + E D W + I + +G ++ + I D TEQK + Sbjct: 67 PQHGLETASRTGRYEVEGWRYRKDGSAFWAHVIIDAVRAEDGTLIGFAKITRDCTEQKAA 126 Query: 526 LE 527 Sbjct: 127 QA 128 >gi|120611490|ref|YP_971168.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120589954|gb|ABM33394.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax citrulli AAC00-1] Length = 1260 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 139/593 (23%), Positives = 257/593 (43%), Gaps = 19/593 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + V H + ++ + + E SL + + +WDWDI VT + G+ Sbjct: 664 WLVSAHDITERKRNEDLVREREALLSLTLSAASLGLWDWDISTGMVTGDARWRELQGMPD 723 Query: 443 GSMHGPIR--NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV------RAADNQFHW 494 + +W + D +N L+ + ++V W Sbjct: 724 AAGQPVAEGVHWTSGMAPADIENVTDALERHIARPDTHFDATWQVAPSQAAAPGAPAGRW 783 Query: 495 MIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + + + + G R +G+ D+T Q+ + + A D LTG+PNR RL Sbjct: 784 VRNLGKIVGHDERGRPGRMLGVCIDVTSQRVQEDMLQQLAHFDALTGLPNRVQLARRLEQ 843 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 + + + V +D+D +K +ND LG + GD +LV + R+ L+ D +ARL Sbjct: 844 AMAHA-RAGGWQLGVAYLDLDGFKPVNDRLGHSAGDRLLVIVAGRLTRALRAVDCVARLG 902 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F +++ + + +++A P L +TVTAS+G+ + + + Sbjct: 903 GDEFVLLMPELQSHADAEQLLHRLMENLAAPYTLGTERVTVTASVGYTLYPEDASDADTL 962 Query: 674 LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 L++A+ AMY AK G N V+ F R E L A+ + L P + + Sbjct: 963 LRHADHAMYGAKQGGRNRVQPFDAVQERARQTLREQAERLREALARGQFMLYLQPKVDMR 1022 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 +VG EAL +W HP G ++ F+ + E + A + +E I R Sbjct: 1023 SGTVVGAEALARWIHPDKGIVTPGAFLHLIEAAELETAFGEWAVESALDLIEQLRASGLE 1082 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + + +NI+++ L + +++ + L +ES + + + L + Sbjct: 1083 --LPVSVNISARHLQQEGFAPWLAGRMARRPGIPHRLLDLEITESAALYDMDHVAPQLQQ 1140 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 LR++GI+++LDDFGT S LSYL +P DT+K + S + G AI++ +I +A++ Sbjct: 1141 LRELGITISLDDFGTGYSSLSYLRRLPMDTLKLDRSFVHGMMSDRGDYAIVQGVIGLARS 1200 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLV 960 +I+A+ + E L R+GC Q ++ P+ + + + + R P Sbjct: 1201 FGYSIVAEGVETEAQGLTLMRLGCTLAQGYCISRPMAPEAFPEWVAQWRAPET 1253 Score = 101 bits (252), Expect = 6e-19, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 85/250 (34%), Gaps = 11/250 (4%) Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341 + + F A + + M+ + + + + + + Sbjct: 65 IAALCFGLQAGVVSALVAAVGSAMLLPEATFQAAGLLASGCLLGLAWRWGQDRLSSRM-- 122 Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 AW+ + + L +A L+ + Q V A G + Sbjct: 123 -AWLALPGLGLTLSLAARAWNGQPPWAVLGGILLLGGGAKLVLGRAQAVNALGRHQTDLN 181 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + + SG W+W + R+ + +LG+ +G P++ W+ H +D Sbjct: 182 A-------MLDASGGGRWEWFVQEQRLVCHGPVYGMLGIDTGGEGCPVQRWIALRHPDDT 234 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDIT 520 + L V E+R+R ++ W+I R + +++G +LR GI D T Sbjct: 235 ERLAAHLQRMVDGLEATFSAEYRMRDTGGRWRWIISRGQVRERDAHGKVLRMGGIHLDAT 294 Query: 521 EQKKSLEGIL 530 ++ + + Sbjct: 295 ALRQVQDAVR 304 Score = 68.1 bits (165), Expect = 8e-09, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 8/149 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +V Q + A + + + + A +G VW + V + I GL G Sbjct: 412 VSVFQDLSAAQRAHDQLAAAHDMLAQAGRMAGLGVWKHRHGQGLVYWSDVCFDIHGLPRG 471 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR---LQYEFRVRAA-DNQFHWMIIRI 499 + +L FR L R R E ++ A D + W+ I Sbjct: 472 GLPPEPAEYLRDFVA---APFRASLADLFRRGRQRSVGWSCEMQILRADDGRAVWVRIHA 528 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEG 528 P+ G + G+ DI E +++ E Sbjct: 529 EPLL-EGGAVTGLRGVMQDIDEWRRAAER 556 Score = 48.0 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 7/144 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASG 443 V+Q + ++ + +R V + + G+ G Sbjct: 542 GVMQDIDEWRRAAERLSQSEDRFMRIFELMPYPVLMSRRSDGAYLMVNEAWERLTGIPRG 601 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G L R + R E + + ++ + + Sbjct: 602 QALGRTAVELGLFSAEGRRQLLDAM----SGRTVHNALEITIHTRNGGDRTLLQSMHA-A 656 Query: 504 NSNGDILRYIGIANDITEQKKSLE 527 +G + + A+DITE+K++ + Sbjct: 657 ELDGTPVWLV-SAHDITERKRNED 679 >gi|312963947|ref|ZP_07778418.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] gi|311281982|gb|EFQ60592.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6] Length = 974 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 140/562 (24%), Positives = 270/562 (48%), Gaps = 10/562 (1%) Query: 399 GIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + +R + V + + + D + + + G M G LP Sbjct: 413 KVLEEQQRLASTVFEAASEGIVILDPDYVLLAVNQAFSRVTGFEIDDMLGRNVVELPS-S 471 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + R +F I + + + G Q E + + + +++ + + G + +G Sbjct: 472 RDARRHFPVIRQALLSH--GTWQGELVETRKNGELYPQWLQLNAVRDLRGKVSHIVGFFA 529 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D++ +++S E + D LTG+ NR F +RL ++ I++D++K Sbjct: 530 DLSARRESEERMRYLTHYDELTGLANRSLFRERLREA-HQRVRQGGRSLALLHINLDRFK 588 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG V D +L + RR+ L D +ARLSG+ F ++ + N +A A + Sbjct: 589 LLNDSLGHEVADQLLQKMARRLINALPEADTIARLSGDEFAVLFDAYGNLSSLARVATRL 648 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + +P+ + E+ V+AS+G + + S ++ + +AM HAKH GGN+ + + Sbjct: 649 LAKLRVPVAVEGHELVVSASMGVSLLPDNAREISALVSQSNMAMQHAKHLGGNNFQFYTD 708 Query: 698 SSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S S R+ ++ L A++ +L + Y P + L ++ +EALI+W+HP+WG + + Sbjct: 709 SLQASTLERLQLENHLRKAIDERQLTVFYQPKLCLATGKLNAVEALIRWEHPQWGMVPPA 768 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AEE +I + F+L W+ Q PI + +N++ L +L ++ Sbjct: 769 DFIGLAEETGLIVPLGEFVLREACWQACEWQRQGLA-PIRVSVNLSVHQLRQGKLVSLVR 827 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T P ++L +ES ++ + E +LR +G+ L +DDFGT S LSYL Sbjct: 828 QVLEETGLDPQYLELELTESQLLDSVEHIIATFQQLRDLGVKLAIDDFGTGYSSLSYLKR 887 Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 IP D VK + + + G + + AI R+II MA + ++A+ + + + L CD Sbjct: 888 IPVDYVKIDQAFIRGLGQGREDAAITRAIIAMAHGLSLKVVAEGVEDQQQLDFLRVERCD 947 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 +Q ++ P+ + + LL++ Sbjct: 948 EVQGYLISRPMQADGLADLLRK 969 Score = 120 bits (301), Expect = 1e-24, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 93/288 (32%), Gaps = 36/288 (12%) Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339 ++ + + + +S + A ++ A L I+Y G + Sbjct: 140 PVNSFMQQAWVFGLIGAATLSASVAYAVSLPAFLSFAVPCLV--PSIVYLLWDGNPQQQG 197 Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL---------------------- 377 +++ + + I + + ++++ L+ Sbjct: 198 WGVLGLILLVSLNLVAWQINRLIQRELLRRFQNQALIEHLQEAQQRSEQLNQDLMREVEQ 257 Query: 378 ----------IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 + + V Q S + R +A+ S +WDW++ D Sbjct: 258 RRQVEEELREAQLGLQDRVAQRSQELDAASLALNKSEARLVMALQASELGLWDWNLQTDE 317 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 V T + + GL + + + P +H +D + L + R Q E+RVR Sbjct: 318 VHHT-QLKELFGLEPEYVTAMLGHLKPRLHPDDLPLLKRALVEHLKGRTEDYQVEYRVRH 376 Query: 488 ADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + W+ R R + NG ++R +G DI+ K E + Sbjct: 377 GAGHWVWIEDRGRAVERAPNGRVIRMLGTRRDISAGKVLEEQQRLAST 424 >gi|222110861|ref|YP_002553125.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] gi|221730305|gb|ACM33125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax ebreus TPSY] Length = 1047 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 130/590 (22%), Positives = 254/590 (43%), Gaps = 27/590 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 V+Q + + Q + E + V V I G Sbjct: 466 HLAVVQDISKRKHMEQVLRQSEEHLRNILNHMPVGVNQVQ-DGKIVFRNDRHVQICGYDI 524 Query: 443 GSMHGPIRNWLPYIHINDRDN------FRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWM 495 + W + + R + + + G ++ E + A + Sbjct: 525 RE-APDVDTWWRLVMPDARQREHAREAWHAACTAALKNPDGAIRTVECVITAKSGVRRAV 583 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + +S+ I D +++K + E + A+ D LTG+PNR+ LDRL L Sbjct: 584 ELSGMILGDSH------IVTMVDQSQRKAAEEEVRYLAYNDPLTGLPNRRLLLDRLEQAL 637 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +SA L VM++D+D +K IN+ G +GD +L + RR+ + + + LAR G+ Sbjct: 638 AMSARHQ-LCGAVMMLDLDNFKTINETQGPDMGDRLLREVARRLRDCVPEDETLARHGGD 696 Query: 616 RFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 F ++L + + + + +I P ++ ++ S+G A + + ++ Sbjct: 697 EFVVVLKDLGADPQEAANRAEEMGQTILAAIRAPFDIDGQQHHTALSVGIAIFRGVRESA 756 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPII 728 E+LK ++LAMY AK G + + F S+R ++ DL ++ +L L Y P + Sbjct: 757 DELLKRSDLAMYEAKAAGRDTLRFFDPQMQAAVSERAALEADLRAGLDAGQLELFYQPKV 816 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 I G EAL++W HP G IS +EF+ +AEE +I + +++ + W Sbjct: 817 DQ--GRITGAEALVRWRHPDRGFISPAEFIPLAEESGLILRVGEWVMRSACAQLAQWSAH 874 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + + + +N++ + + + ++ + R++L +E +++ + E + + Sbjct: 875 PVLGELTVAVNVSPRQFHEGSFVPQVLEALAASGADARRLRLELTEGMLLQDVEDTIAKM 934 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906 +LR G+ +LDDFGT S L+YL +P +K + S + + I R+I+ + Sbjct: 935 VQLRGYGVGFSLDDFGTGYSSLAYLKRLPLHELKIDKSFVRDVLTDPNDAVIARTIVALG 994 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ ++A+ + E L R GC Q ++ PL + L+ +R Sbjct: 995 TSLGLRVVAEGVETEAQRAFLERNGCHAWQGYLLSPPLQAAAFEALVLKR 1044 Score = 83.8 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 4/155 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGL 440 + Q + + R + + D R V +LG Sbjct: 338 LVLRRSQALDHAKETDTALRESEARLRAVFNQAAVGIAQTDSRTGRLVRMNQKFCDLLGY 397 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ + +D L + + E R R D W+ + + Sbjct: 398 SAQELQQMRFQDFS--EPSDLAADLEQLQRMLAGELSEYRMEKRYRRKDGSEVWVDLMVS 455 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 P+ G ++ + DI+++K + + + Sbjct: 456 PLRLE-GQPEHHLAVVQDISKRKHMEQVLRQSEEH 489 >gi|26988982|ref|NP_744407.1| sensory box protein [Pseudomonas putida KT2440] gi|24983800|gb|AAN67871.1|AE016418_11 sensory box protein [Pseudomonas putida KT2440] Length = 562 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 139/563 (24%), Positives = 263/563 (46%), Gaps = 17/563 (3%) Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464 AV + ++ + D+ + +I G + + G L +H + F Sbjct: 5 YRAAVDAA--AIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLH--EPTFF 60 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQK 523 + + V R + E R+ D +W+ + P+ + G + +Y+ I D+TE++ Sbjct: 61 VGMWRALVAGR--VWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKR 118 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + L + D LTG+PNR D L L S + + V ++D+D +K +ND Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAYS-RCEGISLAVCMLDLDGFKAVNDGY 177 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G AVGD +LV + +R+ +L+ D +ARLSG+ F +IL ++ ++ + +++A Sbjct: 178 GHAVGDLLLVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAA 237 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++++ASIG + + ++++A+ AMY AK RG N F Sbjct: 238 PCVVREHTLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQEL 297 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + A+ N EL L Y P + L +++G E L++W P G + +F+ Sbjct: 298 KATHQTVARVRRALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWV 357 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I +++ + + +W+ Q P + +NIA++ L ++ E +Q L++ Sbjct: 358 EQTDLIVEIGEWVIGQALSQLQAWQRQG--QPWSLSVNIAARHLQRSDFAERLQQLLAAY 415 Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P+ + L ESV + N + L R +G+ +LDDFGT S LSYL +P T Sbjct: 416 PAVDPALLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQT 475 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + + +A+ ++I +A+ +IA+ + + L +GC+ Q Sbjct: 476 IKIDQSFVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGY 535 Query: 939 HVASPLGFNSILKLLKERFPLVK 961 +A P+ + + + V+ Sbjct: 536 CIARPMPASDVQAWAQAYQQPVQ 558 >gi|311899817|dbj|BAJ32225.1| putative signaling protein [Kitasatospora setae KM-6054] Length = 726 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 133/589 (22%), Positives = 250/589 (42%), Gaps = 13/589 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A + + R + + D + + + I G Sbjct: 134 EAIRLAADTARQEVEKALRVSEARFRALFESAAIGIGLGDTDGNILAVNRALGDIFGGGP 193 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 M G + +H D + + +R Q++ D + W + + + Sbjct: 194 EDMTGVRVD--DLVHPEDTPGVWEAYEELISGKREYFQFDKPYYRRDGEVVWTHLTVSLI 251 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + +G L + + D+TE+ + E + A D LTG+PNR +F +RL I + + Sbjct: 252 RDDDGAPLYQVAMLEDVTERYRLQERLRHQATHDPLTGLPNRAAFFERLEKIFEEP--EP 309 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIIL 621 + R + +D+D +K +ND LG +GD +L + RR+ L ++ARL G+ F ++L Sbjct: 310 DTRFGLCYVDLDGFKVVNDSLGHDMGDQLLTIVARRLENALSPLGHMVARLGGDEFVVLL 369 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + ++ P+ + + + V AS+G + T ++ A+L + Sbjct: 370 ENCRGEQEAVAAAKTVLAALTKPVVIGDHRLAVGASVGVLERRIASTTPGAAVRAADLTL 429 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G F + + A++ E ++ Y P++ L + G+E Sbjct: 430 YRAKEAGRGRWTLFDPKENARAVSRYAVSVRMPAALDRGEFFIDYQPMVDLSSGTMTGVE 489 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W HP+ G + EF+ +AEE +I + ++LE+ W + + +N Sbjct: 490 ALVRWRHPQLGVLGPEEFVGVAEETGLIMPLGRWVLEQACEQAADWVARFGERAPRLSVN 549 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +A + L ++ + T PS ++L +ES V+G + S L L +G+SL Sbjct: 550 LAVRQARSAGLVGDVERTLRSTGLDPSMLQLEITESTVVGPEDESLKALHALVDLGVSLA 609 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI------AILRSIIPMAKNIETTI 913 +DDFGT S L+YL +P +K GS + + I+ ++ +A + T+ Sbjct: 610 VDDFGTGWSNLAYLRDLPVSNLKIAGSFVGDLHDPAKDTHLGWRIVSGLVSLAHTLGLTV 669 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 A+ + D + L MGCD Q H P+ I + + E P + Sbjct: 670 TAEGVESRADAERLRLMGCDLAQGWHFGRPVRPAEIARRIVETDPEAAS 718 >gi|228906375|ref|ZP_04070259.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] gi|228853287|gb|EEM98060.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] Length = 569 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 140/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ G Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I+ SEF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 362 IAPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565 >gi|113478306|ref|YP_724367.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Trichodesmium erythraeum IMS101] gi|110169354|gb|ABG53894.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Trichodesmium erythraeum IMS101] Length = 771 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 154/592 (26%), Positives = 276/592 (46%), Gaps = 25/592 (4%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + ++ + + R + + D+ W D +P + LG + Sbjct: 178 DMHNITEGKQARKAKLENERRLRALIENTTDLTWIIDAHGTSSYVSPSVMKTLGYVPEEV 237 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + IHIND ++ + + ++RV+ + + + + + Sbjct: 238 VSQ--SIFDLIHINDLLLVTCTINKAIKNPNISQTAIKYRVKNSSGSWCFFEGILTNFLD 295 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G + I ++DIT++K + E N F D LT +PN F+DRL + + L Sbjct: 296 DPG-VRGIIINSHDITQRKLTEERWKYNVFHDALTHLPNHDLFIDRLEEKIKETKCRKKL 354 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 V+++DID++K +N+ G + + ++V + +++ LL + +ARLS + FGI+L + Sbjct: 355 LFAVLLVDIDRFKVLNNRFGHQITNKLIVMIAKKLKTLLNHGNTVARLSPDEFGILLENI 414 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ A + K + +PI L EI + SIG A + + ++ +L++AE+AMYHA Sbjct: 415 SDISDATYIADQINKQLTLPIILDGNEIFINPSIGIAVGSRNISSAEHILQDAEIAMYHA 474 Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLA---------VENSELYLVYHPIIRLMDE 733 K+ + F S RV ++ DL A + SE L Y PI+ L Sbjct: 475 KNLSRGSHQVFCNSMRSQFLQRVQLENDLQSALNNIQSQSLRKQSEFILYYQPIVSLATN 534 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP- 792 EI G EAL++W HPK G IS EF+ +AEE +I + L++L + W++Q Sbjct: 535 EITGFEALVRWQHPKLGFISPDEFIPLAEETGLIIPLGLWILREACFQLRKWQNQLPNNY 594 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + I +N+++K +L + + ++ +T +KL +ES ++ N E R + RLR Sbjct: 595 HLNINVNLSAKQFAQVDLIDQIDKILLETQLDGKSLKLEITESTLIENNESIRGKMSRLR 654 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---------TEKRIAILRSII 903 I L +DDFGT S +YL P +T+K + S + + K I ILRSII Sbjct: 655 ARNIDLYIDDFGTGYSSFNYLYNFPMNTLKIDRSFINRIGLTNLVNNKSIKTIEILRSII 714 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ N+ ++A+ + +L + C+Y Q + PL + L+ + Sbjct: 715 TLSHNLGINVVAEGVETPEQALQLQALKCEYAQGYLFSKPLDMTAATGLVAQ 766 >gi|217969731|ref|YP_002354965.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|217507058|gb|ACK54069.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 712 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 139/593 (23%), Positives = 275/593 (46%), Gaps = 14/593 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIA 435 + G + A + G+ + + V G + + ++ D + P Sbjct: 117 ALARGLAEARGRRARRHAEDGLRAREAHLRIWGEVVEGLHEGIVVTNLAGDILDCNPAFE 176 Query: 436 TILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 I G A + G R H D + + D+ V RG E R + + Sbjct: 177 RITGHARAEVLGLNPRVLKSGRH--DAAFYAGMWDALVT--RGSWVGEVWNRRKSGEIYP 232 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + +R + ++G Y+G+ +DI+ +K+ + D LTG NRQ F++RL Sbjct: 233 ERLALRAVRGADGLPTHYVGMFSDISREKQDQARLDYLTHHDPLTGFANRQLFMERLQQA 292 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 ++ +A + + V+++D+D+++++N+ LG GD +L + RI LK LARL Sbjct: 293 VERAAAGEG-KAAVLLLDLDRFRRVNESLGQDAGDRLLQVMAERIAGCLKRRSSLARLGS 351 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F +++ ++ +A A + IA P+ + + + ++AS+G + + +L Sbjct: 352 DEFLVLITEFTDADALAALARRILDEIARPVTVNGQLLHMSASLGISVHPQDGADAEHLL 411 Query: 675 KNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 + AE A +H H + + + + ++ +L A+ EL L Y PI+ + D Sbjct: 412 QAAEAARAQIRHGLGNRLHFFTAGMDTRARRWIEVESELRHALARGELQLYYQPIVCVRD 471 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + +EAL++W+ P G +S +EF+ +AEE +I AI + LE R + W+D +P Sbjct: 472 GRVRTVEALLRWNSPALGWVSPAEFIPVAEESELIVAIGDWALETACRQVRHWQD-TGLP 530 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +N+++ L L E ++ ++ +T P +++L +ES +M + E + + Sbjct: 531 AVRVAVNVSAHQLAGGRLPERVREVLERTGIDPGQLELELTESAMMSDSEHGARQVEAIS 590 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 ++G+S+ LDDFGT S L+YL +K + S + G K I+ + + +A+ + Sbjct: 591 RMGVSVALDDFGTGYSSLAYLSRFALTKLKIDRSFVDGLSRDPKSSIIVDATLGLARGLG 650 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 ++A+ + E L GCD +Q + P+ ++ L+ P + Sbjct: 651 LRVVAEGVETEEQRALLAAAGCDALQGYLFSPPVAPAALGALIDRFAPAERYA 703 >gi|157960251|ref|YP_001500285.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC 700345] gi|157845251|gb|ABV85750.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella pealeana ATCC 700345] Length = 1492 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 145/577 (25%), Positives = 272/577 (47%), Gaps = 15/577 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 I + + + + D + A + + V +D + I+GL S Sbjct: 911 SIERIAGIYSDITEQRKLKDDVYLLAQAFENTSEAVLIFDSDETIQVSNKAAQNIIGLDS 970 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW-MIIRIRP 501 S+ G ++ + ++ + + + E A + + + Sbjct: 971 ESLIG--LSFSQVLQGEEKS---ASIANLLQQ-GLSWAGEC-FVDAGGCQRCAVWLNVSS 1023 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + NS+G+ RY+ + +DITE+K++ + A D LTG+PNR F +L + + + Sbjct: 1024 ILNSSGNASRYVVVFSDITERKRTEAELRRLANFDILTGLPNRSLFSSKLAQSVYQAEKE 1083 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++ +D+D++K +ND G ++GD +LV + R+ L+ ++L R G+ F I+L Sbjct: 1084 GG-NLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSLVADENVLCRFGGDEFVILL 1142 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + SI P L RE ++ SIG + W ++KNA+LAM Sbjct: 1143 RDTPTIDTVNYLCEQLLASIEKPFVLYGREFFISTSIGVSLWPEDAKQPEVLIKNADLAM 1202 Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGL 738 YHAK G H + + + ++ DL A+E +EL L + P I + ++++VG+ Sbjct: 1203 YHAKEEGKGHFKYYSEERNAEALYHLALEADLRKAIERNELELHFQPQIDILQNDKLVGV 1262 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HPK G I + F+ +AE +I I+ +++ R W Q PI + + Sbjct: 1263 EALLRWNHPKEGFIRTDIFIKVAEACGLIVEIDRWVMGEACRRGAIW-SQKLAEPIKVSV 1321 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI++ + G+Q ++++T S + L +E V+M E ++ L L+++GI + Sbjct: 1322 NISALHFRLPDFISGVQQIMAETEMPHSALSLEITEGVLMKELEVAKQHLKALKELGIDV 1381 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 +DDFGT S L+YL + +T+K + S + AI SII +A+N++ ++A+ Sbjct: 1382 AIDDFGTGYSSLAYLRHFEVNTLKIDRSFLIDIATNKADQAIASSIIELARNLKLDVVAE 1441 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + ++ + GC IQ + A P+ I + Sbjct: 1442 GVETHEQLEHVFSRGCYVIQGYYFAKPMPLAEIETYM 1478 Score = 96.2 bits (238), Expect = 3e-17, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 13/158 (8%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I F + V+A + + R A+ GS +W+W D + G+ Sbjct: 786 IIFYRQRQVMAFKGVNSALIDSENRLKQALKGSNSELWEWQRESDLF----RLENTGGVL 841 Query: 442 SGSMHGPIRNWLPY----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 + G + + IH D + + R R + E+R + W+ + Sbjct: 842 AA---GQSQVYFRLDQFPIHKEDVGEVMAAWEDMLQERTDRFEVEYRYWRTNGTMGWVRV 898 Query: 498 RIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533 RP+ S+ G I R GI +DITEQ+K + + A Sbjct: 899 SGRPVERSDVSGSIERIAGIYSDITEQRKLKDDVYLLA 936 >gi|307326849|ref|ZP_07606041.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces violaceusniger Tu 4113] gi|306887612|gb|EFN18606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces violaceusniger Tu 4113] Length = 748 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 150/580 (25%), Positives = 264/580 (45%), Gaps = 14/580 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A + + + + G+ V + + + +A + G Sbjct: 167 EAISRAALAARTEAEKALHASEAKFQAVFEGAVIGVGIAGLDGEVLVVNDAMARMFG--G 224 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 P RN ++H +D + V R + E D W + + + Sbjct: 225 MDFFRPGRNVTEFVHPDDVPGAHELYRELVNGERDHFRIEKPHYRDDGSELWTNLTVTLL 284 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +S+G + +A DITE ++ E + A D LTG+PNR FL+RL +L A + Sbjct: 285 RDSSGAPQYQLALAEDITEHRQLRERLRYEATHDELTGLPNRTLFLERLDQVLAAGADAE 344 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIIL 621 R V +D+D +K +ND LG A GD +L ++ +R+ + +K +++AR+ G+ F ++ Sbjct: 345 --RFGVCYLDLDGFKAVNDSLGHAAGDRMLKAVAKRLQDCVKTPAELIARVGGDEFLALV 402 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 A A M ++A P+ + RE+ V ASIG + +I +E+L++A++ M Sbjct: 403 TGPAAQADGAGLARRMLAALAEPVRVEGRELRVRASIGVVDGRAGEIGRAEVLRSADITM 462 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK GGN E S + L A+E E ++ Y P++RL D + G E Sbjct: 463 YRAKAAGGNRYEIADADSNARVIARHSLTNGLPSALEKGEFFIEYQPLVRLTDGTVRGAE 522 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM--PPIFIL 797 AL++W HP G + +F+ +AE+ +I + ++LE+ AR WRD P+ + Sbjct: 523 ALVRWLHPVHGVLGPDQFIPLAEDTGLIVPLGRWVLEQAARQAREWRDADEDDGEPLRVN 582 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++ L L A++ PS + L +E+ ++G E + L +L +G+ Sbjct: 583 VNLSPCQLSHPTLVSDTVAVLENAGLCPSALCLEVTENDLIGADESALRPLRQLADLGMD 642 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETT 912 + LDDFGT S LSYL +P T+K + S G + I+ I+ +A ++ Sbjct: 643 IALDDFGTGYSNLSYLRRLPVSTLKLDRSFTRGMQRAPADPVDVKIVEGIVSLAHTLDLA 702 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + + + + L +GCD Q + A P + L Sbjct: 703 VTVEGVETAVQAEHLRGLGCDTAQGWYYARPGPPERLHTL 742 >gi|170690318|ref|ZP_02881485.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] gi|170144753|gb|EDT12914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] Length = 553 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 129/525 (24%), Positives = 242/525 (46%), Gaps = 10/525 (1%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + + + G+ + + WL + D R + ++E+R+R Sbjct: 24 HVSAGVERVFGITAEQLATTPSAWLELVCAVDVGPLRAEMHRIASEGVEG-RFEYRIRRP 82 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 D W+ P+ + G ++R +G++ DIT +++ L + A D LTG+ NR + + Sbjct: 83 DGCLRWIRSTAYPVRDETGAVVRIVGVSEDITVEQERLAALDRLAHTDGLTGLANRSALV 142 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 ++ T+ + +M ID+D++K +ND LG D +L ++ I L Sbjct: 143 RQMKTLCSC-----DAAFALMFIDLDRFKVLNDTLGHTAADRLLKNIAETIQAALPDDAC 197 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 +ARL G+ F +IL E + ++A A + + + + + VTASIG + + + Sbjct: 198 VARLGGDEFAVILNGEADKGRLATLARTLLSAFSSGVPADSADPFVTASIGISVYPENGR 257 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 +L +A++AMY AK G N SS ++ L LA+ + + L + I Sbjct: 258 DHESLLTSADIAMYAAKKGGRNGFRFAGKASSDVLGDFELERVLPLALASGQFVLHFQGI 317 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + + G+EALI+W+HP G + + F+ I EE I + ++++ + WR+ Sbjct: 318 HQPTSLAMTGVEALIRWNHPARGMVRPASFIPILEESGFIVEVGAWVMDAALAQLAYWRN 377 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + + +N++++ L DN L + + K P +++ +ES +M N ++ Sbjct: 378 A-GEKDLRMSVNVSARQLRDNTLVAIVDEALRKHQLPPRCLEIELTESALMENTSLAQET 436 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPM 905 L L+++G+ + +DDFGT S L YL DTVK + S G AI+R II M Sbjct: 437 LIALKRLGVRIAIDDFGTGYSSLGYLADFSPDTVKIDRSFTARLGRDAAAAAIVRGIIQM 496 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + A+ + ++ L CD+ Q + P S++ Sbjct: 497 SHELGMKVTAEGVETSKQLQTLREASCDFAQGYLLTKPASAESLM 541 >gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] Length = 747 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 135/614 (21%), Positives = 250/614 (40%), Gaps = 13/614 (2%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400 IP + + + +A D + +L + + + L + Sbjct: 85 IPVIFMTALTDVDSKVAGFAAGGVDYVSKPFQIEELLARVQTHLALRRTQLELLAAEASL 144 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 R +GD + D V +LG +M G +P Sbjct: 145 RDSELRHRRMFETAGDGILVVDCETGIVADLNDQCCQMLGSTLQAMRGLRVEDIPVFQGA 204 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 L + + D + + G + D+ Sbjct: 205 GAKPIVDALHGASHMKWDEWS----WQKPDGTAVTVEVVGTTYR--AGKRMLAQCTFRDV 258 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 +K++ + A D LTG+PNR +DRL + + D + + ++++D+D +K + Sbjct: 259 RARKEAEARVRYLAMHDALTGLPNRTLLMDRLGQAIAHARRD-HSQVGLLLLDLDHFKHV 317 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +GD +L + RR+ +L+ D ARL G+ F I + N+ A + Sbjct: 318 NDSLGHFIGDGLLEEVARRLRSVLRESDTPARLGGDEFVIAASNLNSPADAEILARRILT 377 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698 ++ + + + SIG A + + +L+ A+ AMY AK +G F Sbjct: 378 ALEPVCVVQGHNLRIGTSIGIAMYPGDGDNPASLLQAADTAMYQAKKKGRGTYRLFTRDL 437 Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + DL AV+ E L Y P + L I GLEALI+W HP G IS + F Sbjct: 438 SMAAERWHTLSNDLHDAVDRGEFVLHYQPQLSLDPSIITGLEALIRWQHPTEGMISPTLF 497 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + + EE + + ++L +W+ Q P + + +N++++ ++ ++ Sbjct: 498 IPLLEEHGRMVEVGKWVLRTACAQNAAWQKQGL-PKVRMAVNLSAQQFYRGDIVATVREA 556 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T +P ++L +ES+ + + + + L+G L+ +G+ L+LDDFGT S LSYL P Sbjct: 557 LEETGLAPEWLELELTESLTLDDTDTTLRLMGDLKALGVKLSLDDFGTGWSSLSYLKRFP 616 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + AI+ SI+ +A+ ++ +A+ + E ++ L C I Sbjct: 617 LDRIKIDRSFVRDIVNDHSTAAIVHSILDLARQLDLDCVAEGVETEEQLQHLRGERCPGI 676 Query: 936 QDSHVASPLGFNSI 949 Q + + I Sbjct: 677 QGFLFSKAVAAADI 690 >gi|46578824|ref|YP_009632.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603569|ref|YP_967969.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris DP4] gi|46448236|gb|AAS94891.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563798|gb|ABM29542.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris DP4] gi|311232687|gb|ADP85541.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris RCH1] Length = 715 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 124/539 (23%), Positives = 242/539 (44%), Gaps = 15/539 (2%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + + +LG+ M G L + D G G Sbjct: 186 LDGVYIGCNKAFSQLLGIPREKMVGRSARDLL---PDHAYAQIIAGDCPSGSDAGEHSCV 242 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 F + AD H + + S+S G + +G DITE K+ I+ A D LTG+ Sbjct: 243 FDILGADGHIHTLALYKSTYSDSQGQVSGIVGTFLDITELKRKEAQIVHQATHDELTGLL 302 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR + ++ + ++VID+D +K IND LG A+GD +L RI EL Sbjct: 303 NRFGMRQHVDRLIV----GGQMSFALLVIDLDDFKTINDSLGHALGDRLLHKAAERIVEL 358 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 + I+ R G+ + ++L + ++ A + +++ E+ ++ SIG A Sbjct: 359 VGSQGIVGRPGGDEYVVLLYNV-DAEAAHAMARRILDIFTDSLSVSGHEVYISLSIGIAV 417 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSEL 720 + ++ + K ++AMY AK GG + + + R+ ++++L A+E E Sbjct: 418 YPEDGDDAANLFKCCDIAMYRAKEEGGARAQRYLAAMQDVITSRLALEKNLRKALERGEF 477 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P + + + G+EAL++W + +F+ +AE+ +I A+ F+L R Sbjct: 478 VLHYQPKVDIRTGAVTGMEALVRWVRDDGTIVPPQDFIPVAEKTGLIVALGEFVLREACR 537 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + +W+ + + + +NI+++ L + + + ++ P ++L +E+ +M + Sbjct: 538 QMHAWQKRFGR--LKMAVNISARQF-QPGLPDTVASALADAGLDPGLLELEITETTMMRD 594 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 + +L RL GI++ +DDFGT S L YL P ++K + S + E I Sbjct: 595 LALTVSVLERLTTGGIAVAIDDFGTGHSSLYYLKTFPISSIKIDRSFVRDIPNDETDATI 654 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + +++ M +N+ I+A+ + E + L + C +Q + + PL ++ ++ R Sbjct: 655 VTTVVSMGRNLGIGIVAEGVETEAQLDFLRSLECPEVQGYYFSKPLPPHAFEAWMENRL 713 >gi|120598899|ref|YP_963473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sp. W3-18-1] gi|120558992|gb|ABM24919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. W3-18-1] Length = 1028 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 133/552 (24%), Positives = 247/552 (44%), Gaps = 10/552 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + GS WDW++ V +P ILG +G M NW ++ D+ + ++ Sbjct: 461 VIQGSDQGYWDWNVTTGEVQISPRFEAILGYQTGEMQLKATNWAQFVCREDQREVKKVVL 520 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + + ++ E R + + W++ + + +S G L G DIT+ K Sbjct: 521 QHLRHLTPSIELEVRCKKKSGELCWVLCKGGIVEVDSKGRALMISGTQADITQLKNHEAE 580 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LTG+PNR+ LDR + D L V +D+D +K +ND G VG Sbjct: 581 LDKVANYDALTGLPNRRLLLDRFKQAISRVNRDGRL-CAVCFLDLDGFKAVNDHYGHDVG 639 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +LV++ + ++++ D LAR+ G+ F + + + M +I + + Sbjct: 640 DQLLVAIVDNLSKIMREQDTLARVGGDEFVALF-DICSEAECTQVLERMLCAIDQTVLIG 698 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706 ++ + ++ASIG + + + +L++A+ AMY AK G N + F R + Sbjct: 699 DKNLRLSASIGVSLYPEDNVDPDILLRHADHAMYMAKAAGKNCFQMFDPDVDRKLLAQRK 758 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 E+L A E L Y P + L E++G EALI+W HP+ G +S S F+ E + Sbjct: 759 WLEELKSAFAKREFVLFYQPKVNLATGEVIGAEALIRWLHPQRGLLSPSVFLPDIEGSEL 818 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSP 825 + +++ I W I I +N++++ LL + + ++ ++ + Sbjct: 819 EIPLGEWVINNAIAQIQRWYRSG--KNINISVNVSARQLLADHFYDFLKQTLANFADVNT 876 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S ++L ES + + + +L +G+ +LDDFGT S L+YL +P +K + Sbjct: 877 SSLELEILESAAIKDMTLAIGILKECASLGVHFSLDDFGTGYSSLTYLRQLPVSALKIDQ 936 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + + + I+ +I +A +IA+ + + L +GC Q +A P Sbjct: 937 SFVRDMLVDQDDLRIVEGVIRLASVFNLAVIAEGVETIEHGRVLATLGCQMCQGYGIAVP 996 Query: 944 LGFNSILKLLKE 955 + + + Sbjct: 997 MTASDFMDWYDN 1008 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F + + + ++ I A SG W+WD+V D T + + I GL+ Sbjct: 308 FGIARDITVQEQSAELIRKSEAGLRQAQQLSGIGSWEWDLVTDTHTWSEQVFEIYGLSPK 367 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 I + + + E A W+ R + Sbjct: 368 KAL-DIEQAQSLFPPESWQKLNHAVTQCLDT-GEPYECEAEFYRAYTSPCWIKTRGQATR 425 Query: 504 NSNGDILRYIGIANDITEQK 523 + G I++ G DIT+ + Sbjct: 426 DEQGRIIKLQGTVQDITQAR 445 Score = 63.4 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 46/336 (13%), Positives = 104/336 (30%), Gaps = 36/336 (10%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 +++ + A + LG+I L + A + +S ++FLF Sbjct: 4 FSRLQFIVVAVASYALLALGWIYFSDQLLL-FITDQQTVFRFSLAKGVFFVLTSALVFLF 62 Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA-RITLASIVLYYTYFIIYH 329 + H + ++ S ++ A + +TL Sbjct: 63 VLNAVPDRHIAPSHRAIEITFSRSVFLGQSPWFRYGIAVLFPLLTLWFAHYLTLELQARL 122 Query: 330 GMKGYERAV-------LLIPAWILIFIWFIGLWMAITKRLDNDI-----IQPALVGGLVL 377 + + + P + I + ++ ++ + + P + + Sbjct: 123 LLLLFTLPISLSAIMGGFAPGLLATLISTLCVYFLVSNVEKSPLDMMLSWLPFVSLSVNG 182 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 I+I ++ L + + V + D ++ D+ V A Sbjct: 183 ILISGLSGYLRASLRKSDLNHQLLESM------VSQTTDAIFVKDLQGRYVVANQGAAAF 236 Query: 438 LGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 +G + M G + L IH D ++ + ++ E ++ Sbjct: 237 VGKSMQEMIGQNDDALFEPISAALIHQKD--------EAVLKEKKVTTHKEH-LQLKSG- 286 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + P+ +S G++ GIA DIT Q++S E Sbjct: 287 LAVFQVTKGPVVDSKGEVRGLFGIARDITVQEQSAE 322 >gi|330967039|gb|EGH67299.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 730 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 147/582 (25%), Positives = 268/582 (46%), Gaps = 26/582 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451 + + E+ + A S D + +I R V + G ++G + G + Sbjct: 155 QAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAGEVLGRTAHEIGI 214 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + R + + + E R + + + + ++ +N Sbjct: 215 WTDTV-------QREYMIDELRQKGRMHHREMNGRDKNGAPLVLDVSVEFITLNN--TAC 265 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + A DI + K + I A+ D LTG+PNR +DRL+ + L NLR ++ + Sbjct: 266 LLMNARDIGQLKSAQAQIQHLAYHDPLTGLPNRSLLMDRLSQQVSLLQ-HQNLRGALLFL 324 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627 D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + S Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARLGGDEFVVLICGLDGSLEQV 384 Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A +R +A P+ L + VT S+G +T +++LK A+ A+Y AK Sbjct: 385 THQVRVLADNLRVLLAEPMFLDGHRLQVTPSVGIVLIPDDGLTPADLLKRADTALYRAKD 444 Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F VS + S R+ ++ DL LA+ +E +L + + +I G EAL++W Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALARNEFHLHFQAQVDCRTNQITGAEALLRW 504 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802 HP++G + +F+ I EE MI + +L+ + Q + +N++ Sbjct: 505 QHPEYGLLPPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNVSP 564 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ E ++ + + + +KL +E +V+ N + + L + LR +G+ +DD Sbjct: 565 RQFRQSDFVERVEHSLKQHHLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAMDD 624 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGVET 684 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 + L R+GC Q + PL LL+ R L + Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPEFETLLQLRRQLQTS 726 Score = 96.2 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 8/151 (5%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + R LA+ + WD DI R+ + + + G+ + R + + Sbjct: 27 ERILEETRARLELALDLAQMGTWDLDITHSRLQASARASFLHGMDAQPFDDDSRLFFERL 86 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +RD R + + R+ LQ +R + D + R R + G+ ++ G Sbjct: 87 PAEERDRVRAAYTAALESRQDCLQMTYRFQMKDGTSRLIESRARIYRDETGNPVKLAGTL 146 Query: 517 NDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+Q ++ E AF D++T Sbjct: 147 LDITQQCVQAALEASEEKFAKAFHSSPDSIT 177 >gi|315500134|ref|YP_004088937.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Asticcacaulis excentricus CB 48] gi|315418146|gb|ADU14786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Asticcacaulis excentricus CB 48] Length = 707 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 130/656 (19%), Positives = 255/656 (38%), Gaps = 32/656 (4%) Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361 + + + R + + ++ + A + + +T+ Sbjct: 57 FNLKMASEYGRALFGNKSVTTMMDTCPLTVEAETPLRDFMQATLAERASELLRGFIVTRD 116 Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL----AVLGSGDI 417 + L + L + Q + + + ++ ER + + Sbjct: 117 GAYAGVGTTLSILKAMNDDLQDSLLQQREMVSDLI--RLSAESERHQSFLNTIIDNIPAM 174 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGP------IRNWLPYIHINDRDNFRTILDSF 471 V D P +LG+ + G +DR ++ Sbjct: 175 VLVKDAHSRVKLINPAGEDMLGVKRSDVVGKTSHDIFPAEQADTFTRSDR-RVLASGEAV 233 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + R R + ++ + +G + + D+TEQK + I Sbjct: 234 MIEEEAIYNG-VRQRT-------VQLKKTVLRGPDGAPDSILTLGIDLTEQKAAEARIAQ 285 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 A D LTG+ NR + + L + + +D+D++K +ND G GD + Sbjct: 286 LAHYDPLTGLGNRTLYTHEIEQALSRVQRHGH-HLALHCLDLDRFKTVNDSFGHLAGDAL 344 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 L + R+ ++ D +AR+ G+ F I+ + A + + + P ++ Sbjct: 345 LRQVGERLRLCVRKGDFIARMGGDEFA-IIQNIERPEDARCLAERVIEVMKSPFDINGIR 403 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 + S+G A ++ +L A+LA+Y K G N + R+ ++ Sbjct: 404 LEAGVSVGIALAPEDAADANNLLSRADLALYRVKSEGRNGWCFYHAEMDAVVQQRLEMEH 463 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 +L A+ + L + P++ L E+V EAL++W HP G +S EF+ +AE+ +I Sbjct: 464 ELRTALSEQQFQLHFQPLLNLDSGEVVSFEALLRWHHPHRGMVSPGEFIPVAEDSGLIGP 523 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I ++L R W P I +NI+ D L ++ + + P R++ Sbjct: 524 IGDWVLREACRQAAQWP-----TPWRIAVNISPLQFRDGSLPRLVKDALKASGLDPRRLE 578 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ESV++ + + + +L +R +G+ + +DDFGT S LSYL PFD +K + S + Sbjct: 579 LEITESVLLADEKHNLKILNTVRDMGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDQSFVR 638 Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + ++I+R+I MA+ + I A+ + E ++ L M C Q + P Sbjct: 639 DLPHDQNALSIIRAISDMAEALGVHITAEGVETEAQMEALKAMNCREAQGYLIGRP 694 >gi|311896188|dbj|BAJ28596.1| putative signaling protein [Kitasatospora setae KM-6054] Length = 616 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 137/571 (23%), Positives = 259/571 (45%), Gaps = 19/571 (3%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 R A +G + D + P A +LG A + G + I + Sbjct: 49 SESRFRAAFSDAGIGMALIDRDDLVIEGNPVFAAMLGRAVAELPGMHIH--QIIDPEEPS 106 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 R V R R++ E R++ + W + + + + G+ + + DITE+ Sbjct: 107 RRR--YRELVRGERDRMRAEKRLKHRGGREVWGRVTVSLVRDHAGEPYYTMVLVEDITER 164 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 ++ + + A D LT +PNR F RL L R + +D+D + IN+ Sbjct: 165 RQLGDRLAYQALHDPLTRLPNRTLFYQRLEAAFRLDEPGGGGRIGLCYVDLDGFAAINES 224 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 LG VGD +LV++ R+ ++ARL G+ F +++ ++ A + + Sbjct: 225 LGHHVGDQLLVAVAARLEHGFAREGRQLVARLGGDEFALLVTGSGGHQELTRLAGRLMDA 284 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699 + P + +TVTASIG T ++++++A+ +Y +K G + Sbjct: 285 LERPFEVAGHRLTVTASIGVVERPVLGSTPTDLIRDADSTLYWSKSDGRARWTLYDRDRG 344 Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + R + L AVE E + Y P++ L D + G EAL++W+HP++G +S F+ Sbjct: 345 ADQLTRHRLATGLRPAVERGEFTVEYQPLVGLADGAVRGAEALVRWNHPRYGLLSPDRFI 404 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE I + ++LE R W + P+F+ +N+A + + D+++ + ++ Sbjct: 405 PLAEESGAIVPLGKWVLEESCRRTREWLAEFPDRPVFVSVNLAPRQIWDSDVVADVADVL 464 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T ++L +ES ++G R L L +G+ + +DDFGT S L+YL +P Sbjct: 465 ERTGLPAPLLQLEITESALLGPAGRPLEALQALADMGVRIAIDDFGTGYSNLAYLSRLPV 524 Query: 879 DTVKFNGSLMT-------GSTEKRIA----ILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 ++K + + + + +R A I+ +++ +A + T+ A+ I + L Sbjct: 525 HSLKLDATFIEAFRESAPDADGRRRAADEQIVGAMVQLAHALGLTVTAEGIENAAQAERL 584 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + GCD Q + A P G +I +L+++ P Sbjct: 585 RQTGCDTAQGWYYARPGGPETIAAILRDQPP 615 >gi|326317226|ref|YP_004234898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374062|gb|ADX46331.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1260 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 137/585 (23%), Positives = 258/585 (44%), Gaps = 18/585 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-- 440 + V H + ++ + D E SL + + +WDW+I VT + G+ Sbjct: 664 WLVSAHDITERKRNEDLIRDREALLSLTLSAASLGLWDWNISTGTVTGDARWRELHGMAA 723 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF------HW 494 + G +W + D +N L+ V + ++V + + W Sbjct: 724 TAEPPGGTGVHWTSGMAPADIENVTDALERHVAHPDSHFDATWQVAPSPSAPPGAPAGRW 783 Query: 495 MIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + + + + G R +G++ D+T Q+ + + A D LTG+PNR RL Sbjct: 784 VRNLGKIVGYDERGRPGRMLGVSIDVTSQRVQEDMLQQLAHFDALTGLPNRVQLARRLEQ 843 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 + + + V +D+D +K +ND LG + GD +LV + R+ L+ D +ARL Sbjct: 844 AMAQA-RAGGWQLGVAYLDLDGFKPVNDRLGHSAGDRLLVIVAGRLTRALRPVDCVARLG 902 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F +++ + + +++A P L +TVTAS+G+ + + + Sbjct: 903 GDEFVLLMPELQSRADAEQLLRRLMENLAAPYTLGTERVTVTASVGYTLYPEDASDADTL 962 Query: 674 LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 L++A+ AMY AK G N V+ F R E + A+ + L P + + Sbjct: 963 LRHADHAMYGAKQGGRNRVQPFDAAQERARQTLREQAERMREALARGQFMLYLQPKVDMR 1022 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 +VG EAL +W HP G ++ F+ + E + A ++++ I R Sbjct: 1023 SGTVVGAEALARWKHPGQGILAPGAFLHLIEGAELEAAFGEWVVDSALDLIEQLRA--GG 1080 Query: 792 PPIFILINIASKDLLDNELCEGMQ-ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + + +NI+++ L + + + + + L +ES + + + L + Sbjct: 1081 LELPVSVNISARHLQQPGFAQWLAGRMAQRPGIPHRLLDLEITESAALYDMDHVAPQLTQ 1140 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 LR++GI+++LDDFGT S LSYL +P DT+K + S + G AI++ +I +A++ Sbjct: 1141 LRELGITVSLDDFGTGYSSLSYLRRLPMDTLKLDRSFVHGMMSDRGDYAIVQGVIGLARS 1200 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +I+A+ + E L R+GC Q ++ P+ + Sbjct: 1201 FGYSIVAEGVETEAQGLTLMRLGCTLAQGYCISRPMPPEEFPGWV 1245 Score = 100 bits (250), Expect = 1e-18, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 88/303 (29%), Gaps = 9/303 (2%) Query: 230 GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSG 289 ++ + L V R + + + L W V + Sbjct: 9 FWLHLALVGLLAAVPPRLLAGASSRRILPVLAGLAAGAASWGSLATAAWMDAVPTAVAAL 68 Query: 290 IACI-AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348 + A + T + L + + +R + +W+ + Sbjct: 69 CFGLQAGAVSALVAALGSAVLLPAATPQAAGLLAVACALGLAWRLAQRRLPPRMSWLDLA 128 Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + L + + L+ + Q G + + Sbjct: 129 GLGLMLALVARAWGGHAPWAGFAGVLLLGGGAKLVLGRAQAANTLGRQQSDLNA------ 182 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + SG W+W + R+ + LG+ G + W H +D + L Sbjct: 183 -MLDASGGGRWEWFVQERRLVCHGPVYEALGIEPGGEGCHVDRWTTLRHPDDTERLAAQL 241 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDITEQKKSLE 527 V E+R+R + ++ W+I R + ++ G +LR GI D T ++ + Sbjct: 242 QHMVAGLESTFSVEYRMRDTEGRWRWIISRGQVCERDAQGKVLRMAGIHLDATALRQVQD 301 Query: 528 GIL 530 + Sbjct: 302 DVR 304 Score = 65.7 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 16/170 (9%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 + ++ G ++ + + Q + G+ R +G VW+ Sbjct: 398 FSASRASIGGEECIVSVFQDLSATQRAHDQLAAAHGLLVQAGRM------AGLGVWEHRH 451 Query: 424 VRDRVTTTPDIATILGLASGSMH-GPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRL 479 + V + I GL G + GP+ ++ FR L Sbjct: 452 GQGLVYWSDVCFDIHGLPRGGLLPGPVEYLRDFV----AAPFRNTLADLFRRGHQNAVGW 507 Query: 480 QYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 E ++ A D + W+ + P+ G + G+ DI E K++ E Sbjct: 508 SCEAQILRADDGRAVWVRVHAEPVL-EAGAVTGVRGVMQDIDEWKRAAER 556 Score = 44.6 bits (104), Expect = 0.098, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 40/144 (27%), Gaps = 7/144 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASG 443 V+Q + ++ + +R V + + G+ Sbjct: 542 GVMQDIDEWKRAAERLSQSEDRFMRIFELMPYPVLMSRRADGAYLMVNEAWERLTGIPRD 601 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G L R + R E + ++ + + Sbjct: 602 QALGRTAVELGLFSAEGRRQLLDTM----SGRTVHNALEITIHPRTGGDRTLLQSLHA-A 656 Query: 504 NSNGDILRYIGIANDITEQKKSLE 527 +G + + A+DITE+K++ + Sbjct: 657 ELDGTPVWLV-SAHDITERKRNED 679 >gi|319426455|gb|ADV54529.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens 200] Length = 1028 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 133/552 (24%), Positives = 247/552 (44%), Gaps = 10/552 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + GS WDW++ V +P ILG +G M NW ++ D+ + ++ Sbjct: 461 VIQGSDQGYWDWNVTTGEVQISPRFEAILGYQTGEMQLKATNWAQFVCREDQREVKKVVL 520 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + + ++ E R + + W++ + + +S G L G DIT+ K Sbjct: 521 QHLRHLTPSIELEVRCKKKSGELCWVLCKGGIVEVDSKGRALMISGTQADITQLKNHEAE 580 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LTG+PNR+ LDR + D L V +D+D +K +ND G VG Sbjct: 581 LDKVANYDALTGLPNRRLLLDRFKQAISRVNRDGRL-CAVCFLDLDGFKAVNDHYGHDVG 639 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +LV++ + ++++ D LAR+ G+ F + + + M +I + + Sbjct: 640 DQLLVAIVDNLSKIMREQDTLARVGGDEFVALF-DICSEAECTQVLERMLCAIDQTVLIG 698 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706 ++ + ++ASIG + + + +L++A+ AMY AK G N + F R + Sbjct: 699 DKNLRLSASIGVSLYPEDNVDPDILLRHADHAMYMAKAAGKNCFQMFDPDVDRKLLAQRK 758 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 E+L A E L Y P + L E++G EALI+W HP+ G +S S F+ E + Sbjct: 759 WLEELKSAFAKREFVLFYQPKVNLATGEVIGAEALIRWLHPQRGLLSPSVFLPDIEGSEL 818 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSP 825 + +++ I W I I +N++++ LL + + ++ ++ + Sbjct: 819 EIPLGEWVINTAIAQIQRWYRSG--KNINISVNVSARQLLADHFYDFLKQTLANFADVNT 876 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S ++L ES + + + +L +G+ +LDDFGT S L+YL +P +K + Sbjct: 877 SSLELEILESAAIKDMTLAIGILQECASLGVHFSLDDFGTGYSSLTYLRQLPVSALKIDQ 936 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + + + I+ +I +A +IA+ + + L +GC Q +A P Sbjct: 937 SFVRDMLVDQDDLRIVEGVIRLASVFNLAVIAEGVETIEHGRVLATLGCQMCQGYGIAVP 996 Query: 944 LGFNSILKLLKE 955 + + + Sbjct: 997 MTASDFMDWYDN 1008 Score = 72.7 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F + + + ++ I A SG W+WD+V + T + + I GL+ Sbjct: 308 FGIARDITVQEQSAELIRKSEAGLRQAQQLSGIGSWEWDLVTNTHTWSEQVFEIYGLSPK 367 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 I + + + E A W+ R + Sbjct: 368 KAL-DIEQAQSLFTPESWQKLNDAVSQCLDT-GEPYECEAEFYRAYTSPCWIKARGQATR 425 Query: 504 NSNGDILRYIGIANDITEQK 523 + G I++ G DIT+ + Sbjct: 426 DEQGRIIKLQGTVQDITQAR 445 Score = 65.4 bits (158), Expect = 5e-08, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 105/336 (31%), Gaps = 36/336 (10%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 +++ + A + LG+I L + A + +S ++FLF Sbjct: 4 FSRLQFIVVAVASYALLALGWIYFSDQLLL-FITDQQTVFRFSLAKGVFFVLTSALVFLF 62 Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA-RITLASIVLYYTYFIIYH 329 + H + ++L S ++ A + +TL Sbjct: 63 VLNAVPDRHIAPSHRAIEITFSRSVLLGQSPWFRYGIAVLFPLLTLWFAHYLTLELQARL 122 Query: 330 GMKGYERAV-------LLIPAWILIFIWFIGLWMAITKRLDNDI-----IQPALVGGLVL 377 + + + P + I + ++ ++ + + P + + Sbjct: 123 LLLLFTLPISLSAIMGGFAPGLLATLISTLCVYFLVSNVEKSPLDMMLSWLPFVSLSVNG 182 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 I+I ++ L + + V + D ++ D+ V A Sbjct: 183 ILISGLSGYLRASLRKSDLNHQLLESM------VSQTTDAIFVKDLQGRYVVANQGAAAF 236 Query: 438 LGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 +G + M G + L IH D ++ + ++ E ++ Sbjct: 237 VGKSMQEMIGQNDDALFEPISAALIHQKD--------EAVLKEKKVTTHKEH-LQLKSG- 286 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + P+ +S G++ GIA DIT Q++S E Sbjct: 287 LAVFQVTKGPVVDSKGEVRGLFGIARDITVQEQSAE 322 >gi|301383442|ref|ZP_07231860.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] Length = 674 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 141/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%) Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453 ER L V+ + D + D+ V P I G + G L Sbjct: 80 SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 139 Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D ++ + + R ++ E D W+ + I P++N G + Sbjct: 140 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 195 Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545 + + DITE+K + E + AF D LT + NR Sbjct: 196 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 255 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 ++ L R TV+ +D+D +K +ND +G GD +L + R+ ++ Sbjct: 256 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 314 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D+LAR+ G+ F I+L+ ++ A + + I + ++I ++ SIG + Sbjct: 315 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 374 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723 ++L++A++AMY AK +G F S D ++I+ L A+EN + + Sbjct: 375 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 434 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI E +VG+EAL++WDHP G IS F+ IAE+L +I + +++ + D+ Sbjct: 435 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 494 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 +WR + + +N++ K+L + + +I+ T +++++ +ESV + P+ Sbjct: 495 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPSAQLQIEVTESVFLYQPDA 554 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901 +L ++R +G+ + LDDFGT S L Y+ P + VK + S ++ ++ AI+ S Sbjct: 555 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPINAVKIDRSFVSRMMTYDRSQAIVSS 614 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ + + ++ I A+ + L +MGC Y Q + P+ ++ +++ Sbjct: 615 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 668 >gi|329848171|ref|ZP_08263199.1| morA [Asticcacaulis biprosthecum C19] gi|328843234|gb|EGF92803.1| morA [Asticcacaulis biprosthecum C19] Length = 799 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 170/790 (21%), Positives = 300/790 (37%), Gaps = 39/790 (4%) Query: 198 VASLLAIFLTIFYMVNR----SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253 V + I LT + S + + W+ L ++ FG + Sbjct: 17 VLLAVVICLTSSFAAIHLLHWSQRAEASQRIKWLSLAGVATGFGIWATHFIAMLAYNPGI 76 Query: 254 RACSEIALSSSLII---------FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304 I+L+ +I R A G M+ Sbjct: 77 PLGFNISLTLISLIIAIAITGSGLALAVYQPFRHAAWAGGAIAGSGIGAMHFIGMAAIEV 136 Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364 A +A+ V+ L A + + T Sbjct: 137 PAQILWAVDLVAASVVLGAGLAAAAVAVAARGNTRLHIAGATGLLVLAIASLHFTAMGAV 196 Query: 365 DI-------------IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 I + + + + + L + + R L V Sbjct: 197 TIQPDPTRITSGVQLSPTHMSTLIAVSAFSVLLGSLLAALFGQKLDKVRARNENRYRLMV 256 Query: 412 LGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 D + D+ + I G + + G + Y +D + Sbjct: 257 ESVKDYAICMLDVDGNVTDWNRAAQDIKGYKAEEILGRNFSIF-YTPQEQKDGEPRHILD 315 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + + E + D W+ + I PM + +G + + + DIT +K+ I Sbjct: 316 LALHSGSYHEPEGQRVRKDGTTLWVDLVITPMFDEDGRHIGFSKVTRDITSRKRDEARIT 375 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D LTG+PNR FLD L L ++ + V+ ID+D +K+IND G A GD+ Sbjct: 376 YMARHDALTGLPNRTHFLDLLDKDLAVANARGE-QVAVIGIDLDGFKEINDQNGNATGDE 434 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 VL L R+ ++ + +AR+ G+ F ++ + ++ + F + ++ P+ + Sbjct: 435 VLRILGTRLKSIVYGQEAIARVGGDEFVAVMRHD-DARDLEAFLERVSVALNEPMLIDNF 493 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIK 708 E+ AS+G A + + +L NA+LAMY AK + R Sbjct: 494 EVKPGASLGVAIFPQDGDSRDVLLNNADLAMYRAKSGLAEKICYYESSMDEAARVRRNTA 553 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 DL AVEN EL L+Y L D IVG EAL++W HP G + EF+ IAEE I Sbjct: 554 RDLWTAVENDELRLLYQVQRSLGDNSIVGYEALVRWQHPTRGLVPPVEFISIAEECGAII 613 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++L + D W I I +N++ L D +L ++ + +T SP R+ Sbjct: 614 EIGKWVLAQACEDAAKW-----NGDIKIAVNLSPAQLTDPDLVAFVRQALYRTGLSPRRL 668 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +ES+V+ + R+ +L +L+ +G+++ +DDFGT S L L FD +K + S + Sbjct: 669 ELEITESMVIADRTRALHILRQLKALGVTIAIDDFGTGYSSLDTLNAFRFDKIKIDRSFL 728 Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + + I+R+I+ + +++E ++A+ + + + L GC+ Q P Sbjct: 729 KDSETNPQARTIIRAIVALGRSLEIKVLAEGVETKNQLDLLKLEGCEEAQGYLFGRPEAV 788 Query: 947 NSILKLLKER 956 + L + Sbjct: 789 EAAEARLLAQ 798 >gi|88859155|ref|ZP_01133796.1| putative Sensory box protein [Pseudoalteromonas tunicata D2] gi|88819381|gb|EAR29195.1| putative Sensory box protein [Pseudoalteromonas tunicata D2] Length = 1503 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 148/560 (26%), Positives = 275/560 (49%), Gaps = 15/560 (2%) Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 F E L A + D V+ D T + + H R ++ Sbjct: 942 FESEENARLFGAAFEYTRDWVFILDKQFRVRATNQVLRESFNFNAS--HTSSRKLSLGLN 999 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + R N+ I+ Q + V AD H +II++ + + + +I YI + Sbjct: 1000 KDTRLNYLRIIAKLKAGE--HFQSDEVVVTADGIAHPVIIKVSTVGDKDNNINNYIVVIT 1057 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI+EQK + + + A D LT +PNR LDR++ +LS N R ++ ID+D +K Sbjct: 1058 DISEQKDAEKELRVLANYDTLTKLPNRSLLLDRISHATELSRRHKN-RLALLFIDLDHFK 1116 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 ++ND LG +GD +L+++ +R+ L+ D +ARL G+ F I++ + ++ + Sbjct: 1117 QVNDTLGHDLGDTLLITVAQRLKYGLRKQDTVARLGGDEFVILIEDIDTIDELIPVCRKI 1176 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + +++P+ L +TV SIG A + S ++LK+A++AMYHAK RGG + F Sbjct: 1177 CEEVSLPVQLGNHRMTVEPSIGVAIFPDDADNSLDLLKSADIAMYHAKKRGGATYQFFHQ 1236 Query: 698 SSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + ++ +L AV+ ++ Y PII D + G E L++W IS + Sbjct: 1237 EMNHKIQRKVQLENELKEAVKLNQFVNYYQPIISATDFTLKGFEVLLRWRQ-DNKLISPA 1295 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AE + +I + L R +D+ +W + P ++ +N++++D + E + Sbjct: 1296 EFIPVAESMGLITTLTFAALTRAMQDLKAW--LVSKPDCYVSVNLSARDFEHETIGEKLT 1353 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +I + SP+++ +ES +M + +++ + L++ G + +DDFGT S LSYL Sbjct: 1354 DIILQADISPTQVVFEITESALMQDSQKALEAMLILKQKGCRIYMDDFGTGYSSLSYLKR 1413 Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + S + + AI+ S + +A ++ + +A+ + + ++ L +GCD Sbjct: 1414 FPIDVLKIDQSFVADIGQDASDEAIIHSTLALAHSLGKSCVAEGVETKAQVEFLQMLGCD 1473 Query: 934 YIQDSHVASPLGFNSILKLL 953 Y+Q + P+ N + LL Sbjct: 1474 YLQGYLFSKPVPSNEVSNLL 1493 Score = 105 bits (261), Expect = 6e-20, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 5/168 (2%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + AL+ L + + + +Q L + R LA+ GSG VWDW+ Sbjct: 787 PVYLTFYALLVLLTVFIWFHRRSKMQQKL--VVAHKESQESEARLKLALEGSGSGVWDWN 844 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I + P + LG + H + +L IH+ DR FR F+ +G + Sbjct: 845 IESTTIYQ-PRLVNELGYSQD--HVTLDEYLNKIHLEDRAKFRIEWLEFLSTNKGSFKCI 901 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 +RVR + W + M N + G ++T + +S E Sbjct: 902 YRVRHKSGYWRWYKDFGKVMVWDNQMPSKVAGTYTNMTNEFESEENAR 949 >gi|326317390|ref|YP_004235062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374226|gb|ADX46495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 745 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 134/577 (23%), Positives = 241/577 (41%), Gaps = 50/577 (8%) Query: 424 VRDRVTTTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 +LG A G + G R + D + E Sbjct: 169 NNRLTRCNRHFEQMLGYAPGELSEGSARQ--QHFSDADWEVMERHGHGETNGAGAGFTGE 226 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---------------------- 520 + A D +R +P+ + I IA D+T Sbjct: 227 MDLLAKDGSTVTCEVRSQPL-DPLFPEQGCICIAMDVTAQRKTQAELARMHAELEHQVQE 285 Query: 521 -----------------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++K E I A D LTG+PNR +R + ++ + Sbjct: 286 RTRQLSETVESLHREINDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVAQEN-G 344 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 V+ +D+D +K +ND LG VGD +LV + +R+ +++ D ++RL G+ F ++L Sbjct: 345 TPLAVVFLDLDHFKHVNDSLGHRVGDALLVEIAKRLRAVVRDRDTVSRLGGDEFILLLPG 404 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 N+ A A ++++ P + E+T+ S+G A + + ++A++AMY Sbjct: 405 -ANAHGAARVATKLQEASRQPYQIGHHELTMAPSMGIALFPDDGSDFDTLTQSADVAMYR 463 Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N F + + L A+E +L L Y P I + EI +EAL Sbjct: 464 AKLDGRNTYRFFTPEMQAQSVRALLLENALRRALERDQLRLHYQPQITIASGEIRSVEAL 523 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++WDHP+ G +S +EF+ IAE+ I I +++ + +W + + +N++ Sbjct: 524 LRWDHPELGPVSPAEFIPIAEDSGQILQIGEWVMRTALAQLQAWHAMGL-EWLSMAVNLS 582 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L E + ++ +T P R++L +E V + +P + + +L G+ +++D Sbjct: 583 ALQFRQPLLPELVSRILDETRLHPQRLELELTEGVAVDDPRSAIATMDQLHARGVRMSMD 642 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LS L +K + S + AI+ +II MA+ + A+ + Sbjct: 643 DFGTGYSSLSQLKRFQIYKLKIDQSFVRDLGVDSNDRAIVSAIIRMAQALGMRTTAEGVE 702 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ L + GCD Q + + P +I LL++R Sbjct: 703 TAEQLEYLRQQGCDEAQGYYFSRPQTAEAITPLLRQR 739 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 53/408 (12%), Positives = 107/408 (26%), Gaps = 44/408 (10%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH 457 + Q + +G + R V P A I G ++ G L Sbjct: 19 AVERLLREQQTLLDSAGVGIVFI-RQRQVVRCNPRYAEIFGYASTREAIGLSSQSLYPSS 77 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 R R + + E ++R + + W + R + N I I + Sbjct: 78 AAFRALGRAAYPTLSLGL--PYRCECQMRRKNGRLFWASLTGRLI-NPLDTSEGSIWIVD 134 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-DNLRPTVMVIDIDKY 576 DI EQ+ + RL + D+ + + ++ Sbjct: 135 DIDEQRHAQI----------------------RLHAAIREKQALFDHAMVGIAFVRNNRL 172 Query: 577 KKINDVL----GIAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKI 630 + N G A G+ L + R + D ++ R + + Sbjct: 173 TRCNRHFEQMLGYAPGE--LSEGSAR-QQHFSDADWEVMERHGHGETNGAGAGFTGEMDL 229 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + L T+ + T AELA HA+ Sbjct: 230 LAKDGSTVTCEVRSQPLDPLFPEQGCICIAMDVTAQRKT------QAELARMHAELEHQV 283 Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD-HPKW 749 + ++S D E Y P+ L + ++ A + Sbjct: 284 QERTRQLSETVESLHREINDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVAQEN 343 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 G + F+ + + ++ + + + +I + Sbjct: 344 GTPLAVVFLDLDHFKHVNDSLGHRVGDALLVEIAKRLRAVVRDRDTVS 391 >gi|78355579|ref|YP_387028.1| response regulator receiver /GGDEF/PAS/PAC domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217984|gb|ABB37333.1| response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 715 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 132/578 (22%), Positives = 252/578 (43%), Gaps = 17/578 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ Q + + + A+ + V+ + + + ILG Sbjct: 147 GELRESNERLLEFQSLLQEKNQFLEALIESMPNPVFFKSLEGEYLGCNAAFCRILGKPKE 206 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPM 502 + G L + R + + + R + D +++ Sbjct: 207 DIVGRRAEDLL---PEEVA-CRVLEGGVLSGAQERAHSCTITMLGDDGGPLQLVLYKSFF 262 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 N G+ +G +DITE KK I A+ D LTG+ NR D + D Sbjct: 263 QNRAGENAGVVGTFHDITELKKKEAQIYHQAYHDELTGLANRVRLKDAIA---DRIRLGG 319 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + V+++D+D +K +ND LG VGD +L+ +RR+ +++ +LAR G+ F ++L Sbjct: 320 DGGLAVLMLDLDNFKNVNDSLGHGVGDKLLLEASRRLRDVVGPQPLLARTGGDEFALLLD 379 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + A + + +P + E E+ +T SIG W + ++KNA++AMY Sbjct: 380 GCKDV--ANRLAAKVLDAFTVPFVIDEHELYITISIGLTCWPEDGADADSLVKNADVAMY 437 Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G + F + R+ I++ + +E E + Y P I + + +VG+EA Sbjct: 438 KAKEQGRSRCLHFDAEMTEQVTRRLSIEKSIRKGLERDEFQVYYQPRINIFNGRLVGMEA 497 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W +S +EF+ +AEE +I A+ +L + W D+ + + +NI Sbjct: 498 LVRWVPEHGAVVSPAEFIPVAEETGLIVALGERVLRLACAQMRIWADR-GWGDLRMSVNI 556 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +++ L E + A + + SP ++L +E+ +M + ++ LLL +L +G+ + + Sbjct: 557 SARQF-QANLTERVAAALRDSGISPDSLELEITETTMMRDIGQTVLLLEQLNGMGLKIAI 615 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L YL P T+K + S + + I+ +II M N+ ++A+ + Sbjct: 616 DDFGTGHSSLYYLKRFPISTLKIDRSFVRDIMKDDGDANIVSTIITMGHNLSLNVVAEGV 675 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + L GC +Q + + P+ + Sbjct: 676 ETDEQLAFLRDKGCVEVQGFYYSRPVPAAEFEDFVLRH 713 >gi|296282038|ref|ZP_06860036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Citromicrobium bathyomarinum JL354] Length = 774 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 156/762 (20%), Positives = 291/762 (38%), Gaps = 41/762 (5%) Query: 199 ASLLAIFLTIFYMVNRS-SMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257 ++L + R + +P+ + + Sbjct: 6 MAILGERNLLLAWRLRELTSHLPSLCALHSFAALACVVALWGHPAATYGLPW-------- 57 Query: 258 EIALSSSLIIFLFMYLHWN--------RWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309 A + + F L + K + + T Sbjct: 58 --AATIAFCNFRQWRLSLDFYPDTIDVTHLRKFHRELQIAANTETAFWVLGAVVFFPTLF 115 Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369 A +++ + + ++ + M + ++ Sbjct: 116 NAHPVFFAVLTAGLLASSVIAYRSMPAPLTSYLGGAMLAAAVLSFTMRDEFSWPSLMLAL 175 Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 A L+ G Q + + S D +W+ D + Sbjct: 176 AFGYALIRSTRRQGRQFEQSCREQFDQRRTAETVKLLLHEYEESSSDWLWEVDEGNCLMN 235 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 G+ + G L R+ T+L V +R L+ Sbjct: 236 VCERFGHAAGVDRDFLEGRELVGLFDAGPA-RERLATLLLDRVRFRDLALEITV-----G 289 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 + W I P S+ + G+ D+TE +++ + + A D LT + NR F + Sbjct: 290 TEKRWWTISGNPASDGS-----VRGVLRDVTESRQTEQRVARMARYDQLTELANRHLFNE 344 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 L +L + T R ++ ID+D +K +ND LG VGD ++ + RRI +++ D+ Sbjct: 345 SLNEML--AGTGRRRRIALLYIDLDHFKSVNDTLGHHVGDGLVRAAARRILGVIREHDLA 402 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL G+ F ++L N + A + +++A P N+ + + V+AS+G I Sbjct: 403 ARLGGDEFAVLLTRVRNLEAVHQCAERIVEAMAQPFNIDGQTVRVSASVGVGYSEDDSID 462 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 E+++ A+LA+Y AK G + + + R ++ DL A+ + LVY P Sbjct: 463 GEELMRQADLALYAAKRAGRSTFADYDPSLNHNEHARRNLELDLRTAITEGQFTLVYQPQ 522 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + L + G E L++W+HP G I EF+ IAEE +I + +++ + + SW Sbjct: 523 VCLKTGKWTGKETLVRWEHPVRGRILPGEFIDIAEETGLIIPLGEWIIRQAIEEAASW-- 580 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 P I IN++ + + L + I + P R+++ +ES +M + E + L Sbjct: 581 ---DEPHRIAINLSPVQMCNPNLVTVLTNAIVEAQIDPQRVEIEITESALMHDSESNVEL 637 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPM 905 L RLR +G+ + LDDFGT S L+YL PFD +K + ++ E+ AI+R++I + Sbjct: 638 LHRLRDLGVRIALDDFGTGYSSLNYLRAFPFDKIKIDRCFVSEMLERADCQAIVRNVIML 697 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 A+ + A+ + + L R GC Q +++ P+ Sbjct: 698 ARALGMETTAEGVETKEQYDWLKRHGCQEAQGYYISRPMESE 739 >gi|332533971|ref|ZP_08409823.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505] gi|332036607|gb|EGI73073.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505] Length = 696 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 141/569 (24%), Positives = 260/569 (45%), Gaps = 14/569 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + + D+ + + T L G Sbjct: 130 DLSEVKKAQADASFNEDMLKTIFEAIPDLFFLMKNDGTIIEYHASNETDLYTKPKQFIGK 189 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + + + F T + + + + +++ + + RI ++ N Sbjct: 190 KMG--DVLPRDVAEKFETYISLVLE-KEQMMSFKYELALPHG-LVFFEARINKITEHN-- 243 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + I DITEQ KS E I A+ D+LT +PNR LDRL+ +L + + N + V Sbjct: 244 --QLMVIIRDITEQHKSDEIIRHQAYYDSLTLLPNRFLALDRLSQLLIEAQRN-NEKAAV 300 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D +KKIND LG GD +L+ +R+ E L+ D + RL G+ F ++L + Sbjct: 301 LFLDLDDFKKINDSLGHETGDKLLIESAQRLQEALRKDDTVGRLGGDEFIVLLRGITDHH 360 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + + P + RE +TASIG A + + T +++L+NA+ AMY AK G Sbjct: 361 AALKITEKLLNNFRAPFKIEGREHILTASIGVAIYPENGTTVADLLRNADTAMYQAKSYG 420 Query: 689 GNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N F + + +E + A+E +E L Y P ++ I+G EAL++W + Sbjct: 421 RNTYSFFTKKMNVIIQRRLVIEEQMRDALERNEFELFYQPQFDAKNKHIIGAEALLRWHN 480 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIASKDL 805 P GN++ EF+ IAE +I I F++ + + +W+ + +N++ + Sbjct: 481 PVLGNVTPDEFIPIAENTGLIVPIGKFVISQALHFLNTWQSTCKRQQKYTMAVNLSPRQF 540 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D L +Q +S+ +P ++L +E V+M +L + +GI+L++DDFGT Sbjct: 541 RDVGLLSFIQNSLSEANVNPESLELEITEGVLMSCHTNVVDILTEITALGINLSMDDFGT 600 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PF+ +K + S + G + ++++II M+ ++ T++A+ + + Sbjct: 601 GYSSLSYLREYPFNVLKIDRSFIDGIVLNNEDCNLVKAIIAMSHSLGLTVVAEGVETKEQ 660 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 L +GCD++Q + + P+ L Sbjct: 661 HTLLNELGCDFMQGFYFSKPIPAKQFLDF 689 Score = 39.5 bits (91), Expect = 3.0, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 4/108 (3%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRL 479 +D R + + G G I + +V Sbjct: 35 YDNERRVIYWNEGSERLYGYTKEEAIGQKIE--DLIIPEPMCEFVIDAHSDWVEKDIEIP 92 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 E ++ D + + M + + + I D++E KK+ Sbjct: 93 ASEITLKGKDGESVSV-FSSHVMFTNQYNTKQMYCIDIDLSEVKKAQA 139 >gi|209526785|ref|ZP_03275306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Arthrospira maxima CS-328] gi|209492746|gb|EDZ93080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Arthrospira maxima CS-328] Length = 1276 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 156/639 (24%), Positives = 275/639 (43%), Gaps = 85/639 (13%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIR 450 Q + ER + V S D + + V +LG + G Sbjct: 629 RQREAEQALRESEERYRMLVELSPDTIAIY-CDDQIVYINRAGVELLGAKQPEDIIGRSI 687 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQ---YEFRVRAADNQFHWMIIRIRPMSNSNG 507 D D IL+ + + +E ++ D + I P +N +G Sbjct: 688 YDFV-----DYDQTTVILNQELTGEAKQQSATLFEQQLIRLDAAIIDVEIAGIP-TNYHG 741 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 I DI+++K++ +L AF D LT +PNR F +L+ L S D N + Sbjct: 742 R-DAIQIIIRDISDRKQAQAQLLHAAFYDPLTELPNRSLFNQKLSEALRRSKEDSNYQFA 800 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENN 626 V+ +D+D++K +ND LG +GD +L+ + R+ + D +ARL G+ F I++ ++ Sbjct: 801 VLFLDLDRFKVVNDSLGHVIGDFLLIEIAHRLEICVTSPGDTIARLGGDEFTILMDHISD 860 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS---------------KITSS 671 + + A + + ++ P + EI TASIG Sbjct: 861 PKQALELAEKIHRELSQPFYIEGHEIFTTASIGIVPSRGCTFKKGAETDNYHCLLYNNPE 920 Query: 672 EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA--------------- 714 + L++A++AMYHAK RG E F + + + ++ DL A Sbjct: 921 DFLRDADIAMYHAKERGKARSEVFDLSMHTQTLALLQLETDLRKAIFGSAQLNVALNHIS 980 Query: 715 ---------------------VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++ + Y PI+ L+ IVG EAL++W HP+ G +S Sbjct: 981 SSESNPLASAISDVSVIPSQLPSLNDFIIHYQPIVCLITGRIVGFEALVRWRHPRRGLVS 1040 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM---------PPIFILINIASKD 804 +EF+ +AEE +I + ++LE R + SW+ Q + I +N++ K Sbjct: 1041 PAEFIPVAEETGLIVPLGAWVLEESCRQLSSWKQQLKNWERSPQSVSSHLTISVNLSGKQ 1100 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L L + + A++++T P +KL +ES+++ N + + ++L +L+ I L +DDFG Sbjct: 1101 LNQLNLIQQIDAILARTNCDPKSLKLEITESMLVENFQTALIVLAQLKARKIHLAIDDFG 1160 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK----------RIAILRSIIPMAKNIETTII 914 T S LSYL +P ++K + S + E+ I+++II +A N+ + Sbjct: 1161 TGYSSLSYLHQLPLKSLKIDQSFVQRLEEEPSNYIDQYSQPQQIIKAIISLAHNLGLEVT 1220 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+ I ++ L +GCDY Q + PL +L+ Sbjct: 1221 AEGIETRQQMQFLHNLGCDYGQGYLFSKPLPAEEATQLM 1259 Score = 81.9 bits (201), Expect = 5e-13, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 6/147 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGL 440 I H+LAT Q + A+ S + + D + I G Sbjct: 312 LEAIAHILATAIERQRADERLKLMERAINSSRNGIIITDATESDNRVIFANSGFEKITGY 371 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + G +L + L S + R E + D W + I Sbjct: 372 SRHQVIGRNCRFLQGRDSD--PKALAELRSAIEEGREC-NIELKKYRPDGSSFWNELSIS 428 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527 P+ N+ G + +IGI DI+++K++ Sbjct: 429 PVYNNQGFLTNFIGIQTDISDRKQAEA 455 >gi|157374772|ref|YP_001473372.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] gi|157317146|gb|ABV36244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella sediminis HAW-EB3] Length = 1447 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 137/565 (24%), Positives = 264/565 (46%), Gaps = 23/565 (4%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V + + G N+ Sbjct: 884 HAEEQLRLFERAIANISEGMFILDSNFHFVEVNEACCELSMTSRDQFIGKQLNF------ 937 Query: 459 NDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR +++ + S + +++G E D M + + + + G + Y+G+ Sbjct: 938 -DRYPESYSDQIRSIL-HQQGSWSNEVESAKGDGSSFLMELTVDAIYDELGQLSHYVGVF 995 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+ +K+ E + D LT +PNR S + L ++ + T+MV+D+D + Sbjct: 996 SDISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKR-----DSHHTLMVLDLDNF 1050 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 KKIND LG VGD++L+ + +RI + + F + RL G+ F I++ + + A A Sbjct: 1051 KKINDSLGHQVGDELLIKVAKRIEDTVPFHTSIYRLGGDEFAILVDNNPDIGSSAVIANK 1110 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P L ++ V SIG + +L+ A++AMYHAK GGN + + Sbjct: 1111 VIDAFVSPFELTSDKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSGGGNRYQFYS 1170 Query: 697 VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 S R+ ++ + + + + + Y P I L ++ G+EAL++ +HP+ G I Sbjct: 1171 ESLNRNAIRQLEVENLIREGLRDDLFEVYYQPKIDLKSGKMAGMEALVRLNHPEQGLIPP 1230 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 SEF+ +AEE +I I ++++ WR Q + +N++S +L + + Sbjct: 1231 SEFIPLAEENGLIVEIGDLVMKKACFAAQKWRSQGIF-DGRVAVNLSSYQFALPDLQQRI 1289 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++++ T + ++L +E V+ PE++ ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1290 ESILRLTQLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLK 1349 Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P T+K + + + + ++ SII +A N+ +++ + + + L + C Sbjct: 1350 RFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEDASQLSILKALKC 1409 Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957 + IQ + + + LL + F Sbjct: 1410 EEIQGFIFSRAVTESQFTTLLHKEF 1434 Score = 118 bits (296), Expect = 5e-24, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 3/186 (1%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 L + + + + A L+L ++I +++ VL I E Sbjct: 707 LTLKKGVTKSLKVIITPPWWLSTQAKFIYLML-ALIISGAIVKAVLRRREVQNQIAKSEE 765 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R L++ GSGD +WDWDI ++ + + L IH D++ Sbjct: 766 RLKLSLWGSGDEMWDWDIETGQIYRSNIWGS-LEFPRDGQRSGENGEESNIHPMDQERVS 824 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524 + L++ + + +RV+ +++ W++ R + + + N + LR G +I K Sbjct: 825 SALNNHFYGKTDHFEAAYRVKGKSDEWVWILDRAKIVERDENDNALRMTGTIKNINNFKH 884 Query: 525 SLEGIL 530 + E + Sbjct: 885 AEEQLR 890 >gi|295835411|ref|ZP_06822344.1| sensory box/GGDEF family protein [Streptomyces sp. SPB74] gi|197696504|gb|EDY43437.1| sensory box/GGDEF family protein [Streptomyces sp. SPB74] Length = 716 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 140/581 (24%), Positives = 254/581 (43%), Gaps = 17/581 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + A + + R G+ + D+ V +A + G Sbjct: 134 EAISRAALGARAAVERALHVSEARFRAVFEGAALGISIADMDGVIVEANDALAGMFGGLV 193 Query: 443 GSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 S+ G +R W H +D N + + V R Q E D W + + Sbjct: 194 SSLRGTNVREWA---HPDDSANVWRLYEELVTGTREYFQAEKPFYRHDGTVLWTNLTVSL 250 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + G L + + D TE++ + A D LTG+PNR F +RL L Sbjct: 251 LRDDQGSPLYQLALLEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLDKAL---QAG 307 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGII 620 +N R + +D+D +K +ND LG GD +LV + R+ I+AR+ G+ F + Sbjct: 308 ENDRFGLCYLDLDGFKTVNDSLGHDAGDRLLVEVADRLQGCAGGGGEIVARIGGDEFVAL 367 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAEL 679 + ++ + A M ++++ P+ + RE+TV SIG + +E+L++A++ Sbjct: 368 TTGPSAREEVHELAGRMMQALSSPVRVDGRELTVRGSIGIVEGPGGGRRGPAEVLRSADI 427 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 MY AK GGN E + + L A+E E ++ Y P++ L D + G Sbjct: 428 TMYRAKAAGGNRYEVADPEADARAITRHGLTTSLPAALERGEFFIEYQPLVDLGDGTVHG 487 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFI 796 EAL++W HP+ G I F+ +AE +I + ++L++ AR W+++ P P+ + Sbjct: 488 AEALVRWSHPQHGTIGPDRFIPLAEHTGLIVPLGRWVLDQSARQARLWQEEHGGPAPLRV 547 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L L ++ +T P + L +ES ++G + L RL ++G+ Sbjct: 548 NVNLSPCQLQHPRLVADTVEILERTGLPPGALCLEVTESALIGADDDLLKPLRRLAEMGV 607 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911 + LDDFGT S L+ L +P +K + + G + I+ I+ +A +++ Sbjct: 608 DIALDDFGTGYSNLANLRRLPVSVLKLDRAFTQGMQQFPADPVDLKIVEGIVALAHSLDL 667 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + + +L +GCD Q + A P + +L Sbjct: 668 AVTVEGVETSAQADQLRELGCDTAQGWYYARPGPAARVREL 708 >gi|119943931|ref|YP_941611.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] gi|119862535|gb|ABM02012.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] Length = 539 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 133/536 (24%), Positives = 250/536 (46%), Gaps = 14/536 (2%) Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 I G ++ + G D+ ++ + +S + E R Sbjct: 3 HFYVEQGFTRISGYSAEEVIGQTPKLFSS-GRQDKVLYKAMWNSI--NTTDAWEGEIWNR 59 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + + I + ++ I Y+ DIT K + E I A+ D +T +PNR Sbjct: 60 RKNGDTYLAHMTIASVRDTGKMISNYVATITDITLNKAASEKINNLAYFDQITQLPNRLL 119 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 +DRL L SA N ++ ID+++ K IN+ G +VG+ +L +T R+ ++++ Sbjct: 120 LVDRLNLALAESA-HSNHHGALLFIDLNQLKIINNTHGYSVGNLLLKEVTARLTQIVRKA 178 Query: 607 DILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 D +ARLSG+ F I+L + +I + A + + P L + T SIG Sbjct: 179 DTIARLSGDEFVILLEKLSERDIEANTEIQNIAKKIIFLLTQPYQLNMHKYRGTISIGAT 238 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719 + ++ S ++LK A++AM+ ++ G N + F + + ++ +L A+E+++ Sbjct: 239 IFNGNEFASEKLLKQADIAMHQSRLAGHNRLCFFNQTMQEAITARAEMEHELREAIEHNQ 298 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y + + +G EALI+W HP+ G IS F+ +AEE +I I ++L Sbjct: 299 FQLYYQIQVS-SSGQALGAEALIRWQHPEDGYISPFNFIPLAEETGLILPIGEWVLNTAC 357 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + W+ + + + +N+++ + + E +++++ K +P R+KL +ES+++ Sbjct: 358 AQLKKWQKKPLTQDLVLAVNVSALQIHQEDFVEQLKSILQKHEITPERLKLELTESMLVE 417 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897 N + LRKIG+ +LDDFGT S L YL +P + +K + S + A Sbjct: 418 NVSGIITKINTLRKIGVLFSLDDFGTGYSSLQYLKKLPINQLKIDQSFVRDLLTDTNDRA 477 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I+R+II M+ N+ +IA+ + + L GC Q + P+ + L+ Sbjct: 478 IVRTIITMSHNLGINVIAEGVETVEQRQYLLSEGCMNYQGYLFSKPVPIDEFEALI 533 >gi|222109704|ref|YP_002551968.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] gi|221729148|gb|ACM31968.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax ebreus TPSY] Length = 696 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 131/582 (22%), Positives = 267/582 (45%), Gaps = 16/582 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ F +I + + + ER + + + + + + + ++ Sbjct: 125 AMVGAFVLINDITHHWEAERAVRQSEERMRKFAIATEEGL-AFHRDGRILDANEALQRMV 183 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + + G R L R YE +R D + + + Sbjct: 184 GYSLAELVGQSIFDFAL--PEYR-----ALAVEYTRRGSEKPYELAMRHKDGRVIPIEVV 236 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + M GD + + DIT +K++ E D LT +PNR+ + +L + + Sbjct: 237 GKTMPQQEGD--YRVVVVRDITARKQAQEQARFLVLHDTLTQLPNRRHLMMQLAR-MASA 293 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 A + R V+ ID+D +K +N+ LG GD +L+ + RR+ + +K D +AR+ G++F Sbjct: 294 AQERQTRAAVLFIDLDHFKTVNESLGNQAGDQLLIEIARRLQDGVKATDFVARVGGDQFI 353 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L N A+ A A+ + + ++++ SIG + + + E+L+ A+ Sbjct: 354 VLLPDLANRAAAAEVADALLARVRAEFAIGGTPLSLSPSIGISVFPDDGYSPDELLRRAD 413 Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AM+H K G + + ++ + + L AV L Y P +R+ D +V Sbjct: 414 AAMHHTKESGRGTRMFYEPGMEGQPTELLQQEHLLREAVFQGAFALHYQPQVRVADGRLV 473 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP G + EF+ +AE +I I ++L R + +W D+ P + + Sbjct: 474 GFEALVRWRHPVRGLVGPDEFIPLAESRGLITPIGRWVLHEACRQLKAWHDEGL-PRVPV 532 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++ + ++ + ++ +P +++ +ES +M + +R L L+ +G+ Sbjct: 533 AVNLSAIEFRQRDVVGEIAQVLQSAGLAPQYLEVEITESALMQQADHTRTTLQALQALGV 592 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 ++T+DDFGT S L+YL P D +K + S +T + + +AI+ +II +A +++ + Sbjct: 593 AVTVDDFGTGYSSLAYLKRYPLDKIKVDRSFVTDTPADSEDVAIVTAIIQLAHSLQLQPV 652 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 A+ + + L R+GC+ Q +A P+ + L+ + Sbjct: 653 AEGVETAEQLALLRRLGCELAQGFGIAPPMDAQRAREWLRAQ 694 >gi|313499625|gb|ADR60991.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida BIRD-1] Length = 562 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 140/562 (24%), Positives = 263/562 (46%), Gaps = 18/562 (3%) Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464 AV + ++ + D+ + +I G + + G L +H + F Sbjct: 5 YRAAVDAA--AIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLH--EPTFF 60 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQK 523 + + V R + E R+ D +W+ + P+ + G + +Y+ I D+TE++ Sbjct: 61 VGMWRALVAGR--VWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKR 118 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + L + D LTG+PNR D L L S + + V ++D+D +K +ND Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAYSRR-EGISLAVCMLDLDGFKAVNDGY 177 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G AVGD +LV + +R+ +L+ D +ARLSG+ F + L ++ ++ + +++A Sbjct: 178 GHAVGDLLLVEVAQRLKSILRGGDAVARLSGDEFVLTLRDVDDEHQLHAALQRVLRALAA 237 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++++ASIG + + ++++A+ AMY AK RG N F Sbjct: 238 PCVVREHTLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQEL 297 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + A+ N EL L Y P + L +++G E L++W P G + +F+ Sbjct: 298 KATHQTVARVRRALRNGELCLYYQPKVNLRSGKVLGFEGLLRWQRPGRGVVPPGDFLPWV 357 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I +++ + + +W+ Q P + +NIA++ L ++ E +Q L++ Sbjct: 358 EQTDLIVEIGEWVIGQALSQLQAWQRQG--QPWSLSVNIAARHLQRSDFAERLQQLLAAY 415 Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P+ + L ESV + N + L R +G+ +LDDFGT S LSYL +P T Sbjct: 416 PAVDPALLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQT 475 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + + +A+ ++I +A+ +IA+ + + L +GC+ Q Sbjct: 476 IKIDQSFVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGY 535 Query: 939 HVASPLGFNSILKLLKE-RFPL 959 +A P+ + + K R P+ Sbjct: 536 CIARPMPASDVQAWAKAYRQPV 557 >gi|146293015|ref|YP_001183439.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella putrefaciens CN-32] gi|145564705|gb|ABP75640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella putrefaciens CN-32] Length = 1028 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 133/552 (24%), Positives = 247/552 (44%), Gaps = 10/552 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + GS WDW++ V +P ILG +G M NW ++ D+ + ++ Sbjct: 461 VIQGSDQGYWDWNVTTGEVQISPRFEAILGYQTGEMQLKATNWAQFVCREDQREVKKVVL 520 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + + ++ E R + + W++ + + +S G L G DIT+ K Sbjct: 521 QHLRHLTPSIELEVRCKKKSGELCWVLCKGGIVEVDSKGRALMISGTQADITQLKNHEAE 580 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LTG+PNR+ LDR + D L V +D+D +K +ND G VG Sbjct: 581 LDKVANYDALTGLPNRRLLLDRFKQAISRVNRDGRL-CAVCFLDLDGFKAVNDHYGHDVG 639 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +LV++ + ++++ D LAR+ G+ F + + + M +I + + Sbjct: 640 DQLLVAIVDNLSKIMREQDTLARVGGDEFVALF-DICSEAECTQVLERMLCAIDQTVLIG 698 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706 ++ + ++ASIG + + + +L++A+ AMY AK G N + F R + Sbjct: 699 DKNLRLSASIGVSLYPEDNVDPDILLRHADHAMYMAKAAGKNCFQMFDPDVDRKLLAQRK 758 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 E+L A E L Y P + L E++G EALI+W HP+ G +S S F+ E + Sbjct: 759 WLEELKSAFAKREFVLFYQPKVNLATGEVIGAEALIRWLHPQRGLLSPSVFLPDIEGSEL 818 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSP 825 + +++ I W I I +N++++ LL + + ++ ++ + Sbjct: 819 EIPLGEWVINTAIAQIQRWYRSG--KNINISVNVSARQLLADHFYDFLKQTLANFADVNT 876 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S ++L ES + + + +L +G+ +LDDFGT S L+YL +P +K + Sbjct: 877 SSLELEILESAAIKDMTLAIGILKECASLGVHFSLDDFGTGYSSLTYLRQLPVSALKIDQ 936 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + + + I+ +I +A +IA+ + + L +GC Q +A P Sbjct: 937 SFVRDMLVDQDDLRIVEGVIRLASVFNLAVIAEGVETIEHGRVLATLGCQMCQGYGIAVP 996 Query: 944 LGFNSILKLLKE 955 + + + Sbjct: 997 MTASDFMDWYDN 1008 Score = 72.7 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F + + + ++ I A SG W+WD+V + T + + I GL+ Sbjct: 308 FGIARDITVQEQSAELIRKSEAGLRQAQQLSGIGSWEWDLVTNTHTWSEQVFEIYGLSPK 367 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 I + + + E A W+ R + Sbjct: 368 KAL-DIEQAQSLFTPESWQKLNDAVSQCLDT-GEPYECEAEFYRAYTSPCWIKTRGQATR 425 Query: 504 NSNGDILRYIGIANDITEQK 523 + G I++ G DIT+ + Sbjct: 426 DEQGRIIKLQGTVQDITQAR 445 Score = 63.0 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 51/338 (15%), Positives = 109/338 (32%), Gaps = 40/338 (11%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 +++ + A + LG+I L + A + +S ++FLF Sbjct: 4 FSRLQFIVVAVASYALLALGWIYFSDQLLL-FITDQQTVFRFSLAKGVFFVLTSALVFLF 62 Query: 271 MYLHWNRWHAKVGYITF--------------SGIACIAILFCMSFYYPMVTASIARITLA 316 + H + IA+LF + + ++ Sbjct: 63 VLNAVPDRHIAPSHRAIEITFSRSVFLGQSHWFRYGIAVLFPLLTLWFAHYLTLELQARL 122 Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM-AITKRLDNDIIQPALVGGL 375 ++L+ + M G+ +L L + + + + + + +L Sbjct: 123 LLLLFTLPISLSAIMGGFAPGLLATLISTLCVYFLVSNVEKSPLDMMLSWLPFVSLSVNG 182 Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 +LI L G+ ++ L + + V + D ++ D+ V A Sbjct: 183 ILISGLSGY--LRASLRKSDLNHQLLESM------VSQTTDAIFVKDLQGRYVVANQGAA 234 Query: 436 TILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 +G + M G + L IH D ++ + ++ E ++ Sbjct: 235 AFVGKSMQEMIGQNDDALFEPISAALIHQKD--------EAVLKEKKVTTHKEH-LQLKS 285 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + P+ +S G++ GIA DIT Q++S E Sbjct: 286 G-LAVFQVTKGPVLDSKGEVRGLFGIARDITVQEQSAE 322 >gi|330859065|emb|CBX69423.1| hypothetical protein YEW_KB43890 [Yersinia enterocolitica W22703] Length = 567 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 138/570 (24%), Positives = 267/570 (46%), Gaps = 17/570 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + A + + ER + D +W+ D + TI GL+ Sbjct: 1 MTEARAADENKAALIASEERFRHVAEAATDWLWETDADLRITYLSQRFLTITGLSVEHWL 60 Query: 447 GPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + L D R+ L + + R LQ + +A I +P+ + Sbjct: 61 GRNLDSLLNC---DVIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRIYAKPIIKN 115 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + +I + G A+DIT + ++ E I + D LTG+PNR + L L A + Sbjct: 116 DQNI-GFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLHNLAAAPHP- 173 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 ++ +D+DK+K +ND G GD VL ++ R+ L+ D++AR G+ F +I+ + Sbjct: 174 LVILNVDLDKFKPVNDTFGHVAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIISGLS 233 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ +I + I P + E++I ++ASIG A + + E+L+ A++AMY AK Sbjct: 234 STKEIEQLCARVIARIESPYLINEKDIFISASIGIALAPQDSMQAEELLRFADIAMYEAK 293 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 + G N + ++ L A++++E L Y P R+ ++ G EAL++ Sbjct: 294 NSGSNRWSFYSSEMNDRLMQRSELERFLRQAIKHNEFSLYYQPRYRIKGTQLTGAEALVR 353 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+HP G + +F+ +AEE +I AI+ + + + +D +W + I +NI++ Sbjct: 354 WNHPVLGLLMPDQFIALAEETGLITAISDWTMLQACQDAATWPAS-----LIISVNISAI 408 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + L E ++ ++ + R++L +E +++ + + + + L+ +G+ L++DDF Sbjct: 409 EFRSQRLIERVRQVLLLSGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRLSMDDF 468 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL PFD +K + S + + + +I+ II + + T+ A+ + Sbjct: 469 GTGYSSLNYLRRFPFDGLKIDKSFIDELTQSHEGRSIVEGIINLGHALSMTVTAEGVETT 528 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++ L + CD Q + P+ + +L Sbjct: 529 EQLEHLQTLMCDEAQGYLLGKPMKLSELLN 558 >gi|218895683|ref|YP_002444094.1| sensory box/GGDEF family protein [Bacillus cereus G9842] gi|218544852|gb|ACK97246.1| sensory box/GGDEF family protein [Bacillus cereus G9842] Length = 567 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 140/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 12 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 68 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 69 KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 127 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 181 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 240 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ + +LKN++LAMY AK +G N Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAAC 300 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ G Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 359 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I+ SEF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 360 IAPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563 >gi|148255842|ref|YP_001240427.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146408015|gb|ABQ36521.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 907 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 153/630 (24%), Positives = 279/630 (44%), Gaps = 35/630 (5%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 +++ R + V ++LI ++ V + + +Q + + Sbjct: 286 LIVTATTTVSAALADWREQMRFLIGVGVTSVLLIAGMLYVVVRRLISDHEASNQRLTLEK 345 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HI----- 458 ER AV + +D V + + GL++ + P + I H Sbjct: 346 ERLDKAVNNMTQGLLMFDASERLVISNQRYIEMYGLSAD-VVKPGCTFRELIAHRKATGS 404 Query: 459 ---NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 ++ + TIL + ++ D + I P+++ ++ Sbjct: 405 FIGDEAEYVATILRDIGRKKSHLIE------TPDG--RSIEIVNEPLADG-----GWLAT 451 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DITE++K+ + I A D LT +PNR F +RL L + R + IDID+ Sbjct: 452 HEDITERRKAEQRITHLAHYDALTELPNRTLFHERLKQELIHVSA--GQRLALHYIDIDE 509 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG +GD++L S+ + + +ARL G+ F ++ N + Sbjct: 510 FKGVNDSLGHLIGDELLKSVAASLSTCVGEAGFVARLGGDEFAVVQTGIRNRGDVEQLIE 569 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +I P + L ++T ASIG A +++KNA+LAMY AK G F Sbjct: 570 DILAAIRAPRDCLGHQLTADASIGVALIPEHGTELDQIMKNADLAMYAAKGAGRRTWRFF 629 Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 R ++ DL A+ + +L + Y P + L D+ IVG EAL++W HP GN+S Sbjct: 630 EPEMDAQVKARHQLEVDLRQAMVDDQLEVYYQPCVSLQDDRIVGCEALVRWKHPVRGNVS 689 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +EF+ IAE+ +I + +L + +W D I + +N++ L Sbjct: 690 PAEFIPIAEDTGLINQLGERVLHLACAEAATWPD-----DIRLAVNVSPVQFKSGTLALK 744 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++ + SP R++L +E+V++ + + + L +LR +G+ + LDDFGT S LSYL Sbjct: 745 VAHALATSGLSPHRLELEITEAVLIRD-DDALDTLHQLRALGVRIALDDFGTGYSSLSYL 803 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 IPFD +K + + +E +I+++++ +A + + A+ + E + L R+G Sbjct: 804 QRIPFDKIKIDRCFVKDITESEGSASIVQAVVNIAAIRKMSTTAEGVETEAQRQVLKRLG 863 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVK 961 C +Q + P + L K + P + Sbjct: 864 CSEMQGYLFSPPKPAADVRSLFKAQRPPSR 893 >gi|149180816|ref|ZP_01859319.1| sensory box/GGDEF family protein [Bacillus sp. SG-1] gi|148851606|gb|EDL65753.1| sensory box/GGDEF family protein [Bacillus sp. SG-1] Length = 778 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 162/770 (21%), Positives = 337/770 (43%), Gaps = 26/770 (3%) Query: 211 MVNRSSMLIPTFAMAWV-----VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL 265 +V + + V + I F + + + R S L S Sbjct: 16 LVFGAIIYFSYLYGNMSGIEANVGVLLGIGFLIFNTWAVNTTINTICLREISFFKLIFSS 75 Query: 266 IIFL--FMYLH-WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL-Y 321 IIF ++ + W V + I + + T R + + + Sbjct: 76 IIFASCISLVNMIDIWSEMVEHDLKMNILLFISANILLAGNVLATIRFIRQIRSLERVGF 135 Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW----MAITKRLDNDIIQPALVGGLVL 377 + + ++ + I L+ + I + + + L+ + Sbjct: 136 FWILFGSFAIGMAFASIRFTLFSSITLFSTIDLFTNRNIPIFEWVYLNNTLLPLMINIFA 195 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +V L + + + + I + R ++ D + + + Sbjct: 196 LVFLELVPGLFSEIHSKEQQELIIENKRRYETLFDNQAVAIFTLDPKGKILKLNNAVQQL 255 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + ++ IH + D F + + V E ++ ++ ++ + I Sbjct: 256 TGYPIDQLK-KGSSFAELIHESKEDEFSSYIMEAVKGSSQMF--ETKISTSEGKYIDVQI 312 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + P+ + +A DITE ++ E I A+ D+LTG+PNR F+ L ++ Sbjct: 313 TLIPIFVKE-KLANINILAKDITEVIQTREQIQHLAYHDSLTGLPNRFQFVKELQQRIET 371 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S L V +D+D++K INDVLG GD +L+ L+ R +K +AR+ G+ F Sbjct: 372 SK----LPAAVCFLDLDRFKVINDVLGHQTGDRLLLQLSERFTSFVKEDVKVARMGGDEF 427 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 + + ++ + + I P + ++E+ VT S+G + + + T +++K A Sbjct: 428 TFLFPEIPSMAELENKIEELMALIQTPFQIEKQELFVTGSMGISIYPNDSDTVEDLMKYA 487 Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY +K +G N E + + S ++ +++D+ A++ E +VY P +++ +I Sbjct: 488 DVAMYRSKEKGKNTFEFYHQQNDEESSKKLALEKDIRKAMKEKEFEIVYQPQVKVSTGKI 547 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 G+EAL++W+HP G I+ ++F+ +AEE +I + ++L R + W ++ + Sbjct: 548 FGVEALLRWNHPAEGLITPNKFISLAEENGLIHELGEWVLRESCRQVNQWHNE-GYSDLQ 606 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +NI+ K L ++ +I + +S S + L +ES+ M + E ++L+ +LR +G Sbjct: 607 LSVNISLKQLYHQNFISTVKRVIDEEGFSTSLLDLEITESMAMKDIEYAKLIFNQLRALG 666 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 IS+++DDFGT S L+++ P D VK +GS + + + I+++II M +N+ Sbjct: 667 ISISIDDFGTGYSSLNHIKNFPIDRVKIDGSFIRDVPGSAEAAIIIKTIIAMTRNLNLLS 726 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 IA+ + + + L + CD IQ + + PL + +LL++ +++ + Sbjct: 727 IAEHVETKEQYEFLQEINCDEIQGYYCSEPLNSFELSELLQQDEKVLQGS 776 >gi|74317287|ref|YP_315027.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74056782|gb|AAZ97222.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation [Thiobacillus denitrificans ATCC 25259] Length = 705 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 151/590 (25%), Positives = 272/590 (46%), Gaps = 24/590 (4%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++++L + + + R + + D++++ D+ ++ +L S+ Sbjct: 116 RVKYLLRASDALRELHAANARNAALLRAIPDLLFEVDVDGRYLSCHSSRKDLLVAPGESL 175 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + + L + F + A W + + S Sbjct: 176 IGRTID--DVLPPEAARICMAALHEANEAGLVTGRQ-FELMLASGA-FWFELSVSRKSAE 231 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G ++ +A +ITE+K + + I AF D+LT +PNRQSFL+RL + ++ + + Sbjct: 232 PGQKPTFVVLARNITERKAAEQKIYELAFFDSLTHLPNRQSFLERLAQDIRVAQR-EKQK 290 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI------------LARLS 613 V+ +D+D +K +ND +G GD +L S R+ ++ D LARL Sbjct: 291 LAVLFMDLDGFKGVNDTMGHDAGDLILQSAAERLRNSIRPGDSASRLAEDGAQVGLARLG 350 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F ++ + A +R+ + P L E+ +T+SIG A + ++ + Sbjct: 351 GDEFTAVIPGITHEEDALRVANRIREQMRTPFVLAGSEVVLTSSIGIAVFPHDGADAATL 410 Query: 674 LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 LK+A+ AMYHAK G ++ + + + R+ ++ +L A+E E LVY P I + Sbjct: 411 LKHADTAMYHAKSCGRDNCQFYSAALTQRAQQRLTLENNLRQALERGEFDLVYQPQIDVA 470 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 I +EALI+W+HP G I+ +F+ +AEE +I I + L A D W+D Sbjct: 471 SGRIRSVEALIRWNHPAGGVIAPQDFIPLAEENGLIVPIGEWALRTAATDAARWQDGGR- 529 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +N++ L +L + ++ +T +P ++L +E +M E + L L Sbjct: 530 --VCVAVNLSPVQLRAADLVPTLVDILRETGLAPGLLELEVTEGALMEEREATHATLEAL 587 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNI 909 G+ L LDDFGT S L YL +P +K + S + G R AI+R+I+ +AKN+ Sbjct: 588 LAGGVQLALDDFGTGYSSLGYLKRVPLSNLKIDQSFVHGLPHDRENLAIVRTILALAKNL 647 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 A+ + L +GCD +Q + + PL +I LL+ R+ L Sbjct: 648 GFRTTAEGVETAEQATTLAGIGCDALQGFYFSRPLPAGAIPALLQRRWRL 697 >gi|165869120|ref|ZP_02213780.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167637730|ref|ZP_02396009.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170704854|ref|ZP_02895320.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|177649293|ref|ZP_02932295.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190565633|ref|ZP_03018553.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227814656|ref|YP_002814665.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229604312|ref|YP_002866848.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|254722510|ref|ZP_05184298.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055] gi|254737552|ref|ZP_05195255.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western North America USA6153] gi|254751867|ref|ZP_05203904.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum] gi|254760387|ref|ZP_05212411.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia 94] gi|164715846|gb|EDR21363.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167514279|gb|EDR89646.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170130655|gb|EDS99516.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|172084367|gb|EDT69425.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190563660|gb|EDV17625.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227003077|gb|ACP12820.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229268720|gb|ACQ50357.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] Length = 828 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 157/755 (20%), Positives = 307/755 (40%), Gaps = 22/755 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 81 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 137 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 195 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + + L L + + Sbjct: 196 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 255 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q S + + ER D + D + + +LG S Sbjct: 256 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 315 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502 ++ G D+ L +G R + RV+ + + + I P+ Sbjct: 316 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 371 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G + DIT+ K+ + I AF D +T I NR F L ++ + Sbjct: 372 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 430 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID++++K IND +G ++GD VL + +R L LAR+ G+ F +++ Sbjct: 431 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 489 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 490 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 548 Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + +++G EA Sbjct: 549 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 608 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G IS EF+ IAEE I +I + L+ + + W + + IN+ Sbjct: 609 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACQQLKEWHSA-GYSNLKMGINL 667 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + + + ++I + + I L +E + M + + + L L+ G+ L++ Sbjct: 668 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 727 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P DT+K + + I+++II +A + +IA+ + Sbjct: 728 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 787 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C IQ + + P+ + + L Sbjct: 788 ETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 822 >gi|51597608|ref|YP_071799.1| hypothetical protein YPTB3308 [Yersinia pseudotuberculosis IP 32953] gi|170022986|ref|YP_001719491.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Yersinia pseudotuberculosis YPIII] gi|186896744|ref|YP_001873856.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Yersinia pseudotuberculosis PB1/+] gi|51590890|emb|CAH22546.1| Conserved putative membrane protein [Yersinia pseudotuberculosis IP 32953] gi|169749520|gb|ACA67038.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Yersinia pseudotuberculosis YPIII] gi|186699770|gb|ACC90399.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Yersinia pseudotuberculosis PB1/+] Length = 855 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 139/573 (24%), Positives = 270/573 (47%), Gaps = 15/573 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ I AT + + ER + D +W+ D +P I G Sbjct: 284 LVIRRAISEAQATDRSRAALAASEERFRHVAESASDWLWETDAELQVTYLSPRFLIISGW 343 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + ++ + + + + R LQ + +A I + Sbjct: 344 SVDHWLGLNLD--SLLNCDITSLRTWLQHTHLTDSRNELQCTY--FSAKGSKRVCRIHAK 399 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ G+I+ + G A+D+T + ++ + I + D LTG+PNR + L L A Sbjct: 400 PII-QQGEIVGFRGTASDLTREIEAEKRIEHLSLHDALTGLPNRTLMTEFLENKLHNLAA 458 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ ++ +++DK+K +ND+ G GD VL + R+ L+ D+++R G+ F +I Sbjct: 459 VEHP-LVILNVNLDKFKPVNDIFGHVTGDQVLYQVAERLRSCLRDKDLVSRQGGDEFVLI 517 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + + ++S +I + + P + ++EI + ASIG + + E+L+ A++A Sbjct: 518 ISNLSSSYEIELLCARVITRLQTPYVINDQEIYLGASIGITLAPQDSMQAEELLRFADIA 577 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGL 738 M AK+ N + I+ + L LAV+ SE L Y P R D +++G Sbjct: 578 MCEAKNSPRNRWRFYASEMNDRLMQRIELEKFLRLAVKKSEFCLYYQPRYRTDDMQLIGA 637 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP G + +F+ +AEE +I AI+ + L + +D ++W + + + Sbjct: 638 EALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTLLQACQDAMTWP-----TSLIVSV 692 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI++ + L E ++ + T R++L +E +++ + + + ++ L+ +GI L Sbjct: 693 NISAIEFRGQCLIERVRQALLVTGLPSHRLELEITERIMIEDADGALKIMTALKTLGIRL 752 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S L+YL PFD +K + S + + + +I+ II + I T+IA+ Sbjct: 753 SIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTESHEGQSIVEGIINLGHAISMTVIAE 812 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + + L + CD +Q +A P+ ++ Sbjct: 813 GVETAEQLTYLQSLHCDEVQGYFLAKPMPVEAL 845 >gi|295676981|ref|YP_003605505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia sp. CCGE1002] gi|295436824|gb|ADG15994.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia sp. CCGE1002] Length = 771 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 139/617 (22%), Positives = 272/617 (44%), Gaps = 20/617 (3%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + A+ R L I +G V Q +A Q + ER Sbjct: 151 AGIVLGAFAVYYRATRRPTPEE-EAMLRDIGSSVGLAVHQDAMA-----QRLAHSEERHR 204 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFR 465 L V + + + P +L + + ++ + D + Sbjct: 205 LVVDHLSEGIVVQSRTGIVLACNPSAQRMLHVTPQVVGRSMQTVMTRAFGEDGSVIGDGN 264 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKK 524 + + L + + W+ + P+ + + + +DI ++ Sbjct: 265 RPVTQVFATGKPMLGVTIGLELMSGEVVWITENVVPILRPGDSEPDSVLISFSDIGPVRE 324 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN----LRPTVMVIDIDKYKKIN 580 + + A +D+LTG+ NR +R+ + A+ D+ V+ +D+D +KK+N Sbjct: 325 AQRQLKYLATRDSLTGLYNRAYLTERMRDLFAPRASGDHGGELASVAVLFVDLDGFKKVN 384 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G GD +L S+ R+ + D LAR+ G+ F I+ + N+ ++ A + Sbjct: 385 DTAGHEAGDTLLCSVAERLSACVGRSDTLARVGGDEFVIVASAYGNTGQLIALAHRVLDL 444 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 IA+P + E + ASIG + + + +++NA+ AMYHAK RG N+ + F Sbjct: 445 IAVPFAVAGNEYYLGASIGISLFPEDGQDVATLMRNADSAMYHAKQRGRNNFQFFTAELN 504 Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + I++ L A+ +EL LVY PI+ +G EAL++W + + GN+S EF+ Sbjct: 505 QHLQRRFTIEQSLRRALAANELSLVYQPIVDSQSARTIGAEALLRWYNSELGNVSPGEFI 564 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AE+ +I I ++L+ + + WR P + + +N++ + D L E ++ + Sbjct: 565 PVAEDAGLIVEIGDWVLDHACQQVAQWRRTLA-PHLIVAVNLSPRQFND-GLLERIERCL 622 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +++ P+ ++L +E ++M + + +L L +G+ +++DDFGT S LSYL P Sbjct: 623 AQSGLEPAALELEITERLLMSDSDTVLPMLCALSAMGVRVSVDDFGTGYSSLSYLKRFPL 682 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + S + G IAI ++++ MA ++ + A+ + L + CD Q Sbjct: 683 HNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQAAFLRAIDCDKQQ 742 Query: 937 DSHVASPLGFNSILKLL 953 + P+G ++ + L Sbjct: 743 GYLYSRPVGASAYARTL 759 >gi|119897241|ref|YP_932454.1| GGEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72] gi|119669654|emb|CAL93567.1| GGEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72] Length = 610 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 130/559 (23%), Positives = 253/559 (45%), Gaps = 13/559 (2%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNF 464 R + ++ + +A + G ++ + + +++ R Sbjct: 44 RFRSIFDNAVLGMYQTTEDGHYLAANQALADLYGYPTPAALMAGLSDIAGRLYVE-RGR- 101 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R + + R + +E V D + W+ + ++G L Y G DI+E+++ Sbjct: 102 RDDFKALIRARARVVDFESEVYRRDGERIWISENAHAVHGADGRFLYYEGSVEDISERRR 161 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + A D +TG+PNR DRL + + D R V ID+D +K +ND +G Sbjct: 162 HRTLLEHQATHDPVTGLPNRYLLQDRLDRAMGAARRRDE-RLMVAFIDLDNFKFVNDSMG 220 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 AVGD +LV + RR+ ++ D LAR G+ F +I+ S + ++ P Sbjct: 221 HAVGDRLLVEMARRLQACVRETDTLARYGGDEFVLIISSAAAQAGPVQVLERVHDAVRQP 280 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702 + L R+++V S+G A + +L++A+ AMY AK G + ++ Sbjct: 281 LALEGRDLSVGCSMGVAVYPRDGADLETLLRHADAAMYQAKAAGKGQFRFYEAGLNAAVQ 340 Query: 703 DRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +R+ ++ L +EN E + Y P ++ G EAL +W + G ++ F+ + Sbjct: 341 ERLALESALRRTLENDSDEFQVAYQPKFD-ASGDVCGCEALARWHSTESGTVAPDRFIPL 399 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALIS 819 AEE +I + +L + + W Q P + +NI+++ D +L ++A + Sbjct: 400 AEETGLIVLLTARVLHAACAEAVRWSGQGGAAPG-VAVNISARHFRRDGQLAALVRAALE 458 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 ++ P R++L +ES+ +GN E + +LG L+ +G+++ +DDFGT S L+YL P D Sbjct: 459 QSGLPPGRLQLELTESLFVGNVEETVAILGELKALGVTIAIDDFGTGYSSLAYLKRFPVD 518 Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + + +I +++ + +++ ++A+ + L GCD +Q Sbjct: 519 VLKIDRSFVGECDRADDARSITGAVLSLGRSLGLRVVAEGVERPAQAAYLLAHGCDELQG 578 Query: 938 SHVASPLGFNSILKLLKER 956 A P+ ++ L Sbjct: 579 YLYAQPMPAAALRDFLASY 597 >gi|22127265|ref|NP_670688.1| hypothetical protein y3389 [Yersinia pestis KIM 10] gi|45443155|ref|NP_994694.1| hypothetical protein YP_3410 [Yersinia pestis biovar Microtus str. 91001] gi|108809345|ref|YP_653261.1| hypothetical protein YPA_3354 [Yersinia pestis Antiqua] gi|108813394|ref|YP_649161.1| membrane protein [Yersinia pestis Nepal516] gi|149366998|ref|ZP_01889031.1| putative membrane protein [Yersinia pestis CA88-4125] gi|167466562|ref|ZP_02331266.1| Conserved putative membrane protein [Yersinia pestis FV-1] gi|218928168|ref|YP_002346043.1| hypothetical protein YPO0998 [Yersinia pestis CO92] gi|229836724|ref|ZP_04456889.1| Conserved putative membrane protein [Yersinia pestis Pestoides A] gi|229840925|ref|ZP_04461084.1| Conserved putative membrane protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842515|ref|ZP_04462670.1| Conserved putative membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229903868|ref|ZP_04518981.1| Conserved putative membrane protein [Yersinia pestis Nepal516] gi|270487607|ref|ZP_06204681.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM D27] gi|294502814|ref|YP_003566876.1| hypothetical protein YPZ3_0704 [Yersinia pestis Z176003] gi|21960338|gb|AAM86939.1|AE013940_5 hypothetical [Yersinia pestis KIM 10] gi|45438023|gb|AAS63571.1| putative membrane protein [Yersinia pestis biovar Microtus str. 91001] gi|108777042|gb|ABG19561.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Yersinia pestis Nepal516] gi|108781258|gb|ABG15316.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Yersinia pestis Antiqua] gi|115346779|emb|CAL19664.1| putative membrane protein [Yersinia pestis CO92] gi|149290612|gb|EDM40688.1| putative membrane protein [Yersinia pestis CA88-4125] gi|229679638|gb|EEO75741.1| Conserved putative membrane protein [Yersinia pestis Nepal516] gi|229690825|gb|EEO82879.1| Conserved putative membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697291|gb|EEO87338.1| Conserved putative membrane protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705667|gb|EEO91676.1| Conserved putative membrane protein [Yersinia pestis Pestoides A] gi|262360883|gb|ACY57604.1| hypothetical protein YPD4_0695 [Yersinia pestis D106004] gi|262364828|gb|ACY61385.1| hypothetical protein YPD8_0695 [Yersinia pestis D182038] gi|270336111|gb|EFA46888.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM D27] gi|294353273|gb|ADE63614.1| hypothetical protein YPZ3_0704 [Yersinia pestis Z176003] gi|320013693|gb|ADV97264.1| Conserved putative membrane protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 788 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 139/573 (24%), Positives = 270/573 (47%), Gaps = 15/573 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ I AT + + ER + D +W+ D +P I G Sbjct: 217 LVIRRAISEAQATDRSRAALAASEERFRHVAESASDWLWETDAELQVTYLSPRFLIISGW 276 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + ++ + + + + R LQ + +A I + Sbjct: 277 SVDHWLGLNLD--SLLNCDITSLRTWLQHTHLTDSRNELQCTY--FSAKGSKRVCRIHAK 332 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ G+I+ + G A+D+T + ++ + I + D LTG+PNR + L L A Sbjct: 333 PII-QQGEIVGFRGTASDLTREIEAEKRIEHLSLHDALTGLPNRTLMTEFLENKLHNLAA 391 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ ++ +++DK+K +ND+ G GD VL + R+ L+ D+++R G+ F +I Sbjct: 392 VEHP-LVILNVNLDKFKPVNDIFGHVTGDQVLYQVAERLRSCLRDKDLVSRQGGDEFVLI 450 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + + ++S +I + + P + ++EI + ASIG + + E+L+ A++A Sbjct: 451 ISNLSSSYEIELLCARVITRLQTPYVINDQEIYLGASIGITLAPQDSMQAEELLRFADIA 510 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGL 738 M AK+ N + I+ + L LAV+ SE L Y P R D +++G Sbjct: 511 MCEAKNSPRNRWRFYASEMNDRLMQRIELEKFLRLAVKKSEFCLYYQPRYRTDDMQLIGA 570 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP G + +F+ +AEE +I AI+ + L + +D ++W + + + Sbjct: 571 EALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTLLQACQDAMTWP-----TSLIVSV 625 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI++ + L E ++ + T R++L +E +++ + + + ++ L+ +GI L Sbjct: 626 NISAIEFRGQCLIERVRQALLVTGLPSHRLELEITERIMIEDADGALKIMTALKTLGIRL 685 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S L+YL PFD +K + S + + + +I+ II + I T+IA+ Sbjct: 686 SIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTESHEGQSIVEGIINLGHAISMTVIAE 745 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + + L + CD +Q +A P+ ++ Sbjct: 746 GVETAEQLTYLQSLHCDEVQGYFLAKPMPVEAL 778 >gi|91792889|ref|YP_562540.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91714891|gb|ABE54817.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella denitrificans OS217] Length = 1450 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 140/561 (24%), Positives = 269/561 (47%), Gaps = 19/561 (3%) Query: 400 IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 I E+ L A+ + ++ D + ++L S G + ++ + Sbjct: 892 IKQTEEQLRLFARAIENISEGMFILDAEHRFLEVNSACCSLLQRTKSSFTGELLSF--NL 949 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + +F T + S + + G + +D+ M + I + + G Y+GI Sbjct: 950 YPE---SFSTQIRSIITQQ-GYWSGDVDALKSDDSTFLMSLTIDAIKDELGLFSHYVGIF 1005 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT +K+ E + D LTG+ NR S L+ ++ ++ T+MV+D+D + Sbjct: 1006 SDITRRKQQEEELRKLTNNDILTGLANRSSLQVTLSNLVKK-----DIHHTLMVLDLDNF 1060 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG +GD +++S+ RI ++ L RL G+ F I+L + A A + Sbjct: 1061 KRINDSLGHQIGDSLIISVAERIQAIIPSHASLYRLGGDEFAILLDKNPDIASSAAIAGS 1120 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + K + P ++ ++ + SIG + + +L+ A++AMYHAK GGN + + Sbjct: 1121 VIKDLKTPFSIESEQLVIGISIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYA 1180 Query: 697 VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 S ++ ++ + + ++ + Y + L + I G+EAL++ +HP+ G I Sbjct: 1181 ESLNQNVLRQLEVENLIRQGLKEDLFEVHYQAKVDLKLDRITGMEALVRLNHPQLGLIPP 1240 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++F+ +AE+ +I I +L + SWR Q I +N++SK +L + + Sbjct: 1241 NDFIPLAEDNGLIIEIGDIVLRKACTAAQSWRQQGIFNG-RIAVNLSSKQFALPDLVQRI 1299 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++++ +T ++L +E V+ NPE + ++ +L K+GISL LDDFGT S LSYL Sbjct: 1300 ESILCQTGLPAENLELEITEGTVIKNPESAIKVMQQLAKMGISLALDDFGTGYSSLSYLK 1359 Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P +K + S + + + ++ SII +A N+ T++ + + + L + C Sbjct: 1360 RFPIHRLKVDKSFVDDIDKSDMDLKMVDSIITIAHNMGLTVVGEGVEQAAQLSILKALNC 1419 Query: 933 DYIQDSHVASPLGFNSILKLL 953 + IQ + P+ + +LL Sbjct: 1420 EEIQGYIFSKPIKESEFTQLL 1440 Score = 121 bits (304), Expect = 6e-25, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 2/160 (1%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 L+ +L +++ ++ + I ER L++ GSGD +WDWDI ++ + Sbjct: 746 ALLTLLFSSALVRAIMRRRVIQKQIALSEERLKLSLWGSGDEMWDWDIESGKIYRSNIWG 805 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 T L + IH D+ + LD + +RV+ +N++ W+ Sbjct: 806 T-LEFPQDGQRSGDVDGESNIHPQDQARVQQALDDHFEGETDHFEVAYRVKNRNNEWLWI 864 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + R + + ++ LR G DI K++ E + A Sbjct: 865 LDRAKIVERDNKERPLRMTGTIKDINNIKQTEEQLRLFAR 904 >gi|268679208|ref|YP_003303639.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268617239|gb|ACZ11604.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 586 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 143/587 (24%), Positives = 265/587 (45%), Gaps = 23/587 (3%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435 L +IG + Q + ER + + ++++ D + + Sbjct: 9 LRTKIIGLGESSVRKSYYPQLQDRIMELERFHALLDRARELIFLVDAQNLHIIDVNAIVC 68 Query: 436 TILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 + L + S+ I WLP+ + + E + + Sbjct: 69 STLEASKESLVHSEITQWLPH-------ELIERMQRLAQGVEDSIMVEMGIENS-GGVVP 120 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + S G+ ++ + DI+E++ + I AF D LT + NRQ DR+ Sbjct: 121 LEF--VLQYLSFGEDDYFVILGKDISERRHAESTIHTLAFFDPLTHLANRQLLHDRMAQA 178 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L S + +++ID+D +K +ND G +GD++L+ + +RI +++ D LAR+SG Sbjct: 179 LAKSQRHHKV-GALLMIDLDNFKALNDTKGHHIGDELLIQVAQRIQTIVREGDTLARISG 237 Query: 615 NRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 + F ++L + + FA ++ + P LL E T ++SIG A + + Sbjct: 238 DEFVVLLEGLAHEESKAAQEAEKFATRVKYLLNEPYELLGYEHTCSSSIGIALFNGQPKS 297 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPI 727 +LK A++AMY AK +G N + + + ++ +L +A+ EL L Y P Sbjct: 298 KETLLKQADIAMYQAKEKGRNRICFYDPLMQENIEHKTTMEHELRMALSKEELILFYQPQ 357 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + L +IVG+EAL++W+HP+ G I + F+ +AEE +I + ++L R + + W+ Sbjct: 358 VNLE-GKIVGVEALLRWNHPQKGLIPPNTFIPLAEETGLIIPVGSWVLHRACQQLSEWKK 416 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 P+ + IN+++K + E + I+ + IKL +ES+++ + + Sbjct: 417 DFPHQPLHLSINVSAKQFQEASFYETVANAIALSGSDAGSIKLELTESLILDSIHETIAK 476 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905 + LR +G+ +LDDFGT S LSYL +P D +K + S + I+++II M Sbjct: 477 IEALRLLGVGFSLDDFGTGYSSLSYLKRLPLDELKIDQSFVRDIGHDNNDAMIVKTIIEM 536 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 A N + +IA+ + + L GC Q P+ + +L Sbjct: 537 AHNFDLDVIAEGVEDKEQFNFLMENGCGLFQGYLFGKPMPPEELERL 583 >gi|218903664|ref|YP_002451498.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|218535542|gb|ACK87940.1| sensory box/GGDEF family protein [Bacillus cereus AH820] Length = 828 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 160/755 (21%), Positives = 309/755 (40%), Gaps = 22/755 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 81 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 137 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 195 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + + L L + + Sbjct: 196 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 255 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q S + + ER D + D + + +LG S Sbjct: 256 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 315 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502 ++ G D+ L +G R + RV+ + + + I P+ Sbjct: 316 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 371 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G + DIT+ K+ + I AF D +T I NR F L ++ + Sbjct: 372 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 430 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID++++K IND +G ++GD VL + +R L LAR+ G+ F +++ Sbjct: 431 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 489 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 490 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 548 Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + +++G EA Sbjct: 549 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 608 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G IS EF+ IAEE I +I + L+ R + W D A + + IN+ Sbjct: 609 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEW-DSAGYSNLKMGINL 667 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + + + ++I + + I L +E + M + + + L L+ G+ L++ Sbjct: 668 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 727 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P DT+K + + I+++II +A + +IA+ + Sbjct: 728 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 787 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C IQ + + P+ + + L Sbjct: 788 ETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 822 >gi|119493187|ref|ZP_01624062.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106] gi|119452752|gb|EAW33929.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106] Length = 1090 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 147/536 (27%), Positives = 259/536 (48%), Gaps = 8/536 (1%) Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + GL++ + G + F + + + E R Sbjct: 544 GRFRLWNKACEQLFGLSAVEVLGK--TVYDVFPPEQAEFFHQQDQAVLSAGKVLDIPEER 601 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 V + P+ N D + I DIT++K++ + + +AF D LT +PNR Sbjct: 602 VETQTLGQRILHTVKVPLLNHYPDTEYLLCIGEDITKRKQAEDQLRHHAFYDTLTNLPNR 661 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 FL+RL + V+ +D+D +K++ND LG +GD +L+++ RR+ L+ Sbjct: 662 ALFLNRLAHSIKQVQQTSGELFAVLFLDLDNFKRVNDSLGHQIGDQLLIAIARRLEGCLR 721 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS-W 663 D LARL G+ F I+L NN A + + + +P NL E+ SIG A Sbjct: 722 SRDTLARLGGDEFTILLEQINNITDAIKVARHLHQQLMLPFNLSGNEVFTNVSIGIALSC 781 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELY 721 + + E+L+NA+ AMY AK G F R +R+ ++ L A+E +E Sbjct: 782 SRHEQHPEELLQNADSAMYRAKEMGKGAYAVFDTRMHRQAVERLQLESQLRRALELNEFQ 841 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 + Y PI+ + E++G EALI+W +P G IS + F+ +AEE+ +I I ++L + Sbjct: 842 VYYQPIVSITTGEVIGFEALIRWLNPYKGFISPALFIPVAEEIGLISKIGQWVLYQACEQ 901 Query: 782 IISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + WR Q + + + +N++S+ L + +L E + +++ T +KL +ES+++ N Sbjct: 902 LQVWRKQFPLFKNLTVSVNLSSQQLREPDLLEQIDQVLATTGLPSHCLKLEITESLLIEN 961 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 +++ +L +++ I L+LDDFGT S LSYL P +T+K + S + + AI Sbjct: 962 YDQALKILRQIQDRNIQLSLDDFGTGYSSLSYLHRFPINTLKIDRSFVKRLKQNHENTAI 1021 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +++I+ +A + IA+ I +++L +GC+Y Q + L I LL Sbjct: 1022 IKAILRLANALAMNTIAEGIETVFQLEKLKGLGCEYGQGHLFSKALDAQDITHLLS 1077 Score = 76.9 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 6/154 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRD--RVTTTPDIATI 437 + I +++AT Q A+ S + + D D + I Sbjct: 367 IHFIQAIANIIATAVARQQSTESLYLMERAINASSNGIIITDATETDHPIIYVNAGFERI 426 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + + +L D + + + R R+ + D + W + Sbjct: 427 TGYSKEEVIEQNCRFLQG-PQTDSSLVERLRTALLQGRECRVV--IQNYRKDGRLFWNDL 483 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 +I P+ N G + +IG+ NDITE+ ++ E + Sbjct: 484 QIAPVFNDRGHLTHFIGVQNDITERYEAQEEVRQ 517 Score = 69.2 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 28/231 (12%), Positives = 60/231 (25%), Gaps = 34/231 (14%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMA------ITKRLDNDIIQPALVGGLVLIVIL 381 Y +L AW+ + + L + + + GL + + Sbjct: 10 YFPRNSLNTKTILGQAWLTMVVGSGILGTTLILRQSVFIQDPITQTVQLSLTGLTFALGI 69 Query: 382 IGFTVIQHVLATGYFSQGI--------------FSDGERQSLAVLGSGDIVWDWDIVRDR 427 + + ++ + + + +R S D++ Sbjct: 70 LLGAIATRFISQLQVNAELETHSQIDPPQCQPFIQERDRF---FSLSLDLLCIASFEGYF 126 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 LG + ++H +D+ + L + +E R R Sbjct: 127 QRVNAAFVNTLGYTEAELLSVP--LWEFVHPDDQAATKAELAEIAQGK-PSFNFENRYRC 183 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK----KSLEGILCNAF 534 D + W+ P +A D+TE K + I A Sbjct: 184 RDGDYRWLSWTSAPFVQEG----LLYAVARDVTEYKHSVAQLQSRIEQQAT 230 >gi|75759399|ref|ZP_00739494.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899313|ref|ZP_04063576.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] gi|228963723|ref|ZP_04124865.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] gi|74493111|gb|EAO56232.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228795959|gb|EEM43425.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] gi|228860344|gb|EEN04741.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] Length = 569 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 140/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S LA+ S IV D I + G L H Sbjct: 14 SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + + E R RA D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ A+ D LT +PNR + + ++ ++ D+ Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L + ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ + +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L + G+EAL++ G Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I+ SEF+ +AEE +I + ++LE+ R + + + +N++ + L+ Sbjct: 362 IAPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L LR +G+ + LDDFGT S L Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 M CDY+Q + A PL + + L Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565 >gi|46201059|ref|ZP_00055836.2| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1] Length = 1034 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 131/579 (22%), Positives = 255/579 (44%), Gaps = 15/579 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + + R + D + D + + I G + + G Sbjct: 449 RDTTEVTAAMRAVAAREHRIRAIMDTVLDGIVTIDEDGTILNANLSVERIFGHSLSELIG 508 Query: 448 PIRNWLPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + D + S + E + D + + I + Sbjct: 509 AN---VSILMPEPDAGHHDGYIKNYLSTGIGAIIGIGREVMGKRKDGSLFPVHLSISELR 565 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + G D+TE K+ + + A D LT +PNR DRL + ++ Sbjct: 566 VEKRRL--FTGTIRDLTENKQLAQRVAYLANHDPLTDLPNRSLLTDRLGQAVAMA-RSAG 622 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 L ++ +D+D + IND +G VG+ +L RR+ + + ARL+G+ F +++ Sbjct: 623 LLVAIITVDLDGFTTINDSMGHDVGNSLLRETARRLAQAVGAGGTAARLAGDEFAVVVPQ 682 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + +I + + P + E+ V +G + + + E+L+NAE+A+++ Sbjct: 683 TSEMAEITAQVTQIHDILNKPYTIHGTEMVVPVDMGVSVFPRDGDDAQELLRNAEMALHN 742 Query: 684 AKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 K R +S ++R+ ++ + A+ + + L Y P +RL D ++G EAL Sbjct: 743 VKRRTDLRMGFFDAAMSFAVTERMTLERSVKDALRSGQFELFYQPQVRLSDYALIGAEAL 802 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G I+ +F+ +AEE +I + ++L + + W D + + + +NI+ Sbjct: 803 IRWRHPELGIITPDKFIPVAEETGLIVPLGTWVLHQACDQLRRWND-LGLTGLRLGVNIS 861 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + +L + + I+++ SP + L +ES++M + E + LL L K+G++L++D Sbjct: 862 GRQFREADLADIVADCIAESGVSPGDLDLELTESMLMTDGEGTLKLLRSLAKLGVTLSID 921 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P DTVK + + + E ++ +II +A ++ IA+ + Sbjct: 922 DFGTGYSSLAYLKRFPVDTVKIDRAFVRDLDQDEDGRVLVNAIISLAHSLSLKTIAEGVE 981 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 E L R GCD IQ + P+ + K P Sbjct: 982 TESQASLLARHGCDEIQGYMIGRPMPVADFAEFAKSYCP 1020 Score = 44.6 bits (104), Expect = 0.093, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + + VI+H + + + + S DI D +T + Sbjct: 113 AGLTLLPRVIRHAIERQEGQAALEASHRTSQALLDASHDIAMLLDAEGHILTLNTEAEQY 172 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 L ++ G + + + ++ R+ L + R + D HW Sbjct: 173 LNAPPDAVIGQ--SIFDLLPLTLAEHRRSFLAEALESGRT-----VQFEDTDG-IHWFAN 224 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKS 525 R+ ++ R+ + DIT ++ + Sbjct: 225 RLLAVAGVEAGEHRFAIFSRDITGERAN 252 >gi|209515164|ref|ZP_03264032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. H160] gi|209504418|gb|EEA04406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. H160] Length = 789 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 125/526 (23%), Positives = 240/526 (45%), Gaps = 12/526 (2%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + + ++ GL + WL + D + ++ + E+R+R + Sbjct: 262 HVSAGVESVFGLTPQELSRKPSAWLDLVVPEDLEPVLAEMNRVASEGTEG-RVEYRIRRS 320 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 D W+ P+ + + R +G+ DIT +++ L + A+ D LTG+ +R + + Sbjct: 321 DGCLRWIRSTAYPVRDGCAKVTRIVGVGEDITLEQERLAALDRLAYTDGLTGLASRGALV 380 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 R+ ++ N+ +M +D+D++K +ND LG D +L + + I L Sbjct: 381 RRMKSLC-----RQNVAFGLMFVDLDRFKVLNDTLGHTAADRLLKDIAKVIQGALPPDAC 435 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 +ARL G+ F +I+ EN+ +A A ++ + + VTASIG + + Sbjct: 436 VARLGGDEFAVIV--ENDKATLATMAQSLLNRFSNDVRKDHAAPFVTASIGISIFPEHGR 493 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVES-FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 +L +A++AMY AK G N + SS ++ DL A+ +++ L + I Sbjct: 494 DHEALLTSADIAMYAAKRGGRNAFRFADKASSALLGDFELERDLPTALASNQFVLHFQGI 553 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + G+EAL++W+HP G ++ F+ I EE I + ++++ + W+ Sbjct: 554 HEPASLAVKGVEALVRWNHPARGLVAPGSFIPILEESGFIVEVGTWIIDAALAQLAIWQT 613 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + + +N++++ L D+ L + + K SP R+++ +ES +M N ++ Sbjct: 614 AGGK-KLSMSVNVSARQLRDDSLVAIVNEALRKHQVSPGRLEIELTESALMENSSLAQAT 672 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPM 905 L L+++G+ + +DDFGT S L YL D VK + S A I+R II M Sbjct: 673 LMALKRLGVRIAIDDFGTGYSSLRYLADFSPDIVKIDRSFTARLGRDAAATSIVRGIIQM 732 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + + A+ + + L GCDY+Q + P ++ Sbjct: 733 SHELGIKVTAEGVETNQQLHALREAGCDYVQGFFLTMPTDAEKLVH 778 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 67/215 (31%), Gaps = 18/215 (8%) Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN---DIIQPALVGGLVLIVILI 382 + + + Y R + LI I ++ + + I++ AL + V+ + Sbjct: 35 FLAYFLSRYGRRRTIPLTSFLIAIAAGVGIASLVHQAASEAAMILRLALSMAAGIAVLAV 94 Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-A 441 + A + + S + + D + + + A ++ + Sbjct: 95 VHRKLGADHARQSAATALASGL------LHANRDCLKMLATDGKMLRVSEHGAMLMEAES 148 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G +WL + +DR T L + + W + P Sbjct: 149 PEQLSGV--DWLAFWTGDDRTAAETALAGALSGASTSFTGSC--ATTKGRTKWWNSTLTP 204 Query: 502 MSNSNGDILRYIGIANDITEQ----KKSLEGILCN 532 ++ +G + + + D+T+Q K E Sbjct: 205 VTGEDGAVSALLCASEDVTQQCELLKTLRERNQLM 239 >gi|167035254|ref|YP_001670485.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166861742|gb|ABZ00150.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 861 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 150/621 (24%), Positives = 282/621 (45%), Gaps = 15/621 (2%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 +W LW + L +I ++ L + V +L +Q Sbjct: 242 YHLSWSSPLPGHQLLWAVLPALLSVLLILGLVMLYLCRHALRSSRAVGLTLLHLQQSNQA 301 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + +R + D +W+ D + + A + G G N L Sbjct: 302 LEASEQRFRAVAESASDWIWETDRQQRLTYLSQRFANVTGYPVDDWLGHPLNQLLACDTT 361 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + +L + + L+ +R + Q + I R + +G L + G A+DI Sbjct: 362 PLSPWLDVLTTADPQQLANLRCTYR--DPNGQNRYCRISARAIW-HDGKALGFRGTASDI 418 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++ + I + D LTG+ NR L L L ++D+D +K I Sbjct: 419 TDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGNDSPPLTLL--LLDLDNFKPI 476 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A GD VL + R+ + + D++ARL G+ F ++L +N +I F + Sbjct: 477 NDSLGHAAGDAVLQEVATRLRDTTRDGDLVARLGGDEFILVLGGMDNRSEIDRFCARLIG 536 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697 + PI +++ + ASIG A + + E+++ A++A+Y AK G N F + Sbjct: 537 LLQQPIIFDGQQLHIGASIGVAQTRTQGFDAGELIRCADIALYQAKADGKNTWRYFAAEM 596 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + R ++ DL A+ N E L Y P RL D IVG+EAL++W HP+ G + F Sbjct: 597 NQQIQYRRQLENDLRRALRNQEFVLHYQPRYRLGDLRIVGVEALLRWQHPQEGLLGPDTF 656 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+ +I A+ ++L R W + + + +N++ L +++ ++ + Sbjct: 657 IPLAEQSDIIVALGRWVLREACRTAHDWPN-----DVLVSVNLSPAQFLRSDVVADVREI 711 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + T + R++L +E+V++ + E + + L+++G+ L +DDFGT S L YL P Sbjct: 712 LLDTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLRTYP 771 Query: 878 FDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 FD++K + ++G A++++II + + + T+ A+ + E +K L + C Sbjct: 772 FDSIKIDKRFISGLNNNGGSDRAVVQAIINLGEAMGLTVTAEGVESEQQLKALEKDRCHE 831 Query: 935 IQDSHVASPLGFNSILKLLKE 955 +Q +++ PL + LL++ Sbjct: 832 VQGYYMSRPLDSAGLQALLQQ 852 >gi|91776819|ref|YP_546575.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacillus flagellatus KT] gi|91710806|gb|ABE50734.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacillus flagellatus KT] Length = 747 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 159/783 (20%), Positives = 311/783 (39%), Gaps = 57/783 (7%) Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS-----KLVNL 245 G+ +G+ + + I Y ++ A+ + L L + Sbjct: 1 MLGVAVGMLVSAVVNVAILYQAQLVTLQHVLPALLFAWLVNALGVLLLLPLLLNITWAEI 60 Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305 S R L+ ++ +F + Y +L + Sbjct: 61 RSFWQRRARFSLLALLAVTVEWAIFQLVP--------DYADQYMWFAFLVLPLVVLISMR 112 Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365 + + + + ++ + G + A P W L W + ++I L Sbjct: 113 MGITGVSMVVLALSIVALMSAQVDYQAGLDHA-GYQPVWAL---WVLMATLSIVGMLIAA 168 Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + + + + + + + D + D Sbjct: 169 LQS-----------------------SREVTERALRHSETKFRAVIENAQDGIVSIDEDG 205 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYE 482 V + G + G + + I ++ RD R + ++ ++ + E Sbjct: 206 RLVEFNHAAEVMFGYRREDVLGKMLVDI-LIPLSLRDAHRRGHERYLASGVSKMLDRRLE 264 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 AD + + I + G L G D+TE++K I AF D LT +P Sbjct: 265 LSALRADGTEFPVEVTITSLK-EQGLPL-LTGFFRDLTERRKVESEIRNLAFYDALTTLP 322 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR+ LDRL + S V+ ID+D +K +ND G +GD +LV + RR+ + Sbjct: 323 NRRLLLDRLQQAIAASVRHGR-HGAVLFIDLDNFKALNDSRGHDIGDLLLVEVARRLRQC 381 Query: 603 LKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 ++ D +ARL G+ F I+L E + A + + I P L E E ++S Sbjct: 382 VRNEDTVARLGGDEFVIVLEDLSLNLEQAIAQTRQVAQKVLEIINHPYQLGEIEHHNSSS 441 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG + + ++ E+LK ++ AMY AK G N + F + + ++ L LA+ Sbjct: 442 IGIVLFNGNFVSMEELLKRSDTAMYEAKAAGRNTLRFFDPAMQAALERRVDMELQLRLAI 501 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 +L L + ++ G E L++W HP G ++ EF+ IAE+ +I +I ++L Sbjct: 502 VQKQLRLFCQVQVDAE-RKVFGAEILLRWQHPDHGLLAPKEFVGIAEDSGLIVSIGHWVL 560 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + W + + + +N++++ + + ++ ++ T PS +KL +ES Sbjct: 561 YNACLQLKDWEARPGFDSLQLAVNVSARQFRHADFVDEVRKILQSTGADPSLLKLELTES 620 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894 VV+ N + + LR++G+ ++DDFGT S L+YL +P VK + S + E Sbjct: 621 VVLDNIADAVAKMNALRELGVRFSMDDFGTGYSSLAYLKRLPLSQVKIDRSFVREIAEDA 680 Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A++++I+ M+ + +IA+ + E+ + L GC + Q A P+ +++ Sbjct: 681 SDAAMVQAILAMSNTLGLKVIAEGVETEVQFELLQSYGCRFFQGYLFAKPMLIQDFEQMV 740 Query: 954 KER 956 +++ Sbjct: 741 QDK 743 >gi|120611288|ref|YP_970966.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120589752|gb|ABM33192.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] Length = 743 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 136/576 (23%), Positives = 241/576 (41%), Gaps = 50/576 (8%) Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 +LG A G + H +D D E Sbjct: 169 NNRLTRCNRHFEQMLGYAPGELSEGSARQR---HFSDADWEAMECHGHGEPNGTGFTGEM 225 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE---------------------- 521 + A D +R +P+ + I IA D++E Sbjct: 226 ELLAKDGSTVACEVRSQPL-DPLFPEQGCICIAMDVSEQRKTQAELARMHAELEQQVQER 284 Query: 522 -----------------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +K E I A D LTG+PNR +R + ++ + Sbjct: 285 TRQLSETVESLHREINDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVAQEN-GT 343 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 V+ +D+D +K +ND LG VGD +LV + +R+ +++ D ++RL G+ F ++L Sbjct: 344 PLAVVFLDLDHFKHVNDSLGHRVGDALLVEIAKRLRAVVRDRDTVSRLGGDEFILLLPG- 402 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 N+ A A ++++ P + E+T+ S+G A + + ++A++AMY A Sbjct: 403 ANAHGAARVATKLQEASRQPYQIGHHELTMAPSMGIALFPDDGCDFDTLTQSADVAMYRA 462 Query: 685 KHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F + + L A+E +L+L Y P I + EI +EAL+ Sbjct: 463 KLDGRNTYRFFTPEMQAQSVRALLLENALRRALEREQLHLHYQPQITIASGEIRSVEALL 522 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +WDHP+ G IS +EF+ IAE+ I I ++L + +W + + +N+++ Sbjct: 523 RWDHPELGPISPAEFIPIAEDSGQILQIGEWVLRTALAQLQAWHAMGL-EWLSMAVNLSA 581 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L E + ++ +T P R++L +E V + +P + + +L G+ +++DD Sbjct: 582 LQFRQPLLPELVSRILEETRLHPQRLELELTEGVAVDDPRSAIATMDQLHARGVRMSMDD 641 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LS L +K + S + AI+ +II MA+ + A+ + Sbjct: 642 FGTGYSSLSQLKRFQIYKLKIDQSFVRDLGVDSNDRAIVSAIIRMAQALGMRTTAEGVET 701 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ L + GCD Q + + P +I LL++R Sbjct: 702 AEQLEYLRQQGCDEAQGYYFSRPQTAQAITPLLQQR 737 Score = 51.9 bits (123), Expect = 5e-04, Method: Composition-based stats. Identities = 55/411 (13%), Positives = 114/411 (27%), Gaps = 52/411 (12%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH 457 + Q + +G + R V P A I G ++ G ++ Sbjct: 19 AVERLLREQQTLLDSAGVGIVFI-RQRQVVRCNPRYAEIFGYASTREAIGLSS---QSLY 74 Query: 458 IND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + R R + + E ++R + + W + R + N I Sbjct: 75 PDSAAFRALGRAAYPTLSLGL--PYRCECQMRRKNGRLFWASLTGRLI-NPLDTSEGSIW 131 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-DNLRPTVMVIDI 573 I +DI EQ+ + RL + D+ + + Sbjct: 132 IVDDIDEQRHAQI----------------------RLHAAIREKQALFDHAMVGIAFVRN 169 Query: 574 DKYKKINDVL----GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN--S 627 ++ + N G A G+ S +R + + G G E + Sbjct: 170 NRLTRCNRHFEQMLGYAPGELSEGSARQRHFSDADWEAMECHGHGEPNGTGFTGEMELLA 229 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A +R P+ + I + + S + AELA HA+ Sbjct: 230 KDGSTVACEVRSQPLDPLFPEQGCICIAMDV-----------SEQRKTQAELARMHAELE 278 Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD-H 746 + ++S D E Y P+ L + ++ A Sbjct: 279 QQVQERTRQLSETVESLHREINDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVA 338 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 + G + F+ + + ++ + + + +I + Sbjct: 339 QENGTPLAVVFLDLDHFKHVNDSLGHRVGDALLVEIAKRLRAVVRDRDTVS 389 >gi|16124908|ref|NP_419472.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] gi|13421870|gb|AAK22640.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] Length = 694 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 136/559 (24%), Positives = 251/559 (44%), Gaps = 14/559 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 D +R ++A+ +V ++D+ +V + + + L +H Sbjct: 143 RAERDRQRLTMALELDDLLVREYDLRTRQVFFSGHAPDLQKY-----CTFKDDPLEIVHP 197 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 DR ++ S EF+++ D W+ + +G + + + D Sbjct: 198 EDRQRCADLVASRKLGEARVF--EFKLKRDDGIETWVRSVGKVFIGQDGQPEKLVNLFKD 255 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT++++ E I AF+D LTG+PNR F R + ++ +++ID+D +K Sbjct: 256 ITDRRRQTEAIETLAFKDPLTGLPNRTLFQHRFQEAVS-ASETLGEMFGLIMIDVDHFKD 314 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD +L L + + D +ARL G+ F +IL + + A++ Sbjct: 315 INDTLGHDAGDALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQ 374 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + PI R T +ASIG A + M+KNA++A+Y AK G N F S Sbjct: 375 DLLRRPIQHGGRSFTASASIGAALHGDLDADPAHMIKNADIALYRAKEAGRNRSIVFEPS 434 Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ D+ A+ +E L Y P++ + + + G EAL++W HP+ G ++ + Sbjct: 435 MRSEVERRLELLRDVRAALTENEFTLYYQPVVDIRENRVAGFEALMRWVHPEQGVLTPAR 494 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 FM E+ + + E + + +W D+ + +NI+S L E +Q Sbjct: 495 FMAAFEDQDLSLKLGDVAFETALKQMRAWLDEGVEFG-RVAVNISSAQFRSGRLAEEIQE 553 Query: 817 LISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +++ R+ + +E+V MG + + RL + G+ + LDDFGT + L+ L Sbjct: 554 RLARWSVPCERLTIEVTENVYMGWGSDLVSETVRRLHEAGVMIALDDFGTGYASLANLRQ 613 Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 P D +K + S + + AI++++I + ++ ++A+ + ++ L R GCD I Sbjct: 614 FPIDRLKIDKSFVQN--GEDEAIVKAVITLGTSMGMKVVAEGVEDAEQLEALARYGCDQI 671 Query: 936 QDSHVASPLGFNSILKLLK 954 Q H P+ + LK Sbjct: 672 QGYHFGRPMPAGEVAGFLK 690 >gi|303248671|ref|ZP_07334925.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio fructosovorans JJ] gi|302489927|gb|EFL49853.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio fructosovorans JJ] Length = 569 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 138/505 (27%), Positives = 251/505 (49%), Gaps = 9/505 (1%) Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 R L + + + R + + R ++ G + + I DI+ QK Sbjct: 65 VREGLAAVLKGKAPRYAMDLSY----GKTQSTSWRSMVVTPLTGALPGALVILTDISRQK 120 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + E IL +AF D LTG+ NR FL+RL + + V+ +DID++K +N Sbjct: 121 QLEEHILHDAFHDTLTGLFNRALFLNRLDQAIKRLKRNPEALYAVVYLDIDRFKLVNKTF 180 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L+ + R+ +LL+ D LAR G+ F I++ + A ++ + +A Sbjct: 181 GHVTGDRLLMVIANRLQKLLRDVDTLARFGGDEFAILVEDVAGLADASAMADSVLRHLAA 240 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P L ++EI VT SIG + + ++L++A+ AMY +K GG+H F Sbjct: 241 PFRLKKQEIFVTCSIGVVLGSGAYEHPDQVLRDADNAMYSSKEHGGDHYTVFDAGMRVLT 300 Query: 704 RVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + ++ + L A+E+ E+ + Y PI+ L EI G+EAL +W HP G I SEF+ IA Sbjct: 301 QRRMEMELALRHALESGEMTVHYQPIVSLTTGEITGVEALARWFHPTQGTIPPSEFIPIA 360 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISK 820 EE +I + +L + R +++ + + + +NI+ + + E + A++++ Sbjct: 361 EETGLINDLGALVLRQACRRMVALGKENPDATHLTLSVNISGRQFKRPDFVEEVAAILTE 420 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T PS +KL +ESV+M N + + + RL+ + + + +DDFGT S LSY+ PFD+ Sbjct: 421 TDIDPSLVKLELTESVLMDNADEAVDTIKRLKALSVKVVIDDFGTGYSSLSYIQRFPFDS 480 Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + E I+R+II MA + ++A+ + L+ + C+ Q Sbjct: 481 LKVDRSFVGNMNEAEQNMEIVRTIIAMAHKLGLEVVAEGVELAEHRTALSDLRCESAQGF 540 Query: 939 HVASPLGFNSILKLLKERFPLVKNT 963 + + P+ + L+++++ + Sbjct: 541 YFSKPVAGEELETLVRKKWNITPPA 565 >gi|299537092|ref|ZP_07050395.1| sensory box/GGDEF family protein [Lysinibacillus fusiformis ZC1] gi|298727333|gb|EFI67905.1| sensory box/GGDEF family protein [Lysinibacillus fusiformis ZC1] Length = 571 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 133/557 (23%), Positives = 243/557 (43%), Gaps = 37/557 (6%) Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSF 471 S IV D I + G L H + FR + + Sbjct: 26 NSSIIVAITDRTGKITFVNDHFCKISKYTREELVGQDHRLLNSGFHP--KSFFREMWKTI 83 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 E RA D +W+ I P + G +YI I DIT QK ++ I Sbjct: 84 --GNGDMWNGEVCNRAKDGSLYWVKTTIIPFLDERGKPYQYIAIRVDITAQKD-IKKITH 140 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 A+ D LTG+PNR+ RL S + + ID++++K IND LG +GD Sbjct: 141 IAYHDELTGLPNRRKLEQRLENEFHQSRRTGE-KFALFFIDVNRFKHINDGLGHIIGDMF 199 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 LV ++ R+ + + R + + F +IL N+ +I + A + + E Sbjct: 200 LVEMSNRLRNIDHTSNSFYRHNSDEFVMIL---NDVSRIEEMAKEIIGVFHESFIVDTYE 256 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 + SIG + + + E+LKNA++AMY AK GN +R + ++++ Sbjct: 257 FYASISIGISVFPDHANSVEELLKNADIAMYAAKSTRGNQYRLYRDNMDEANDKWLLLET 316 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L A++ L L Y P I L + ++G+EAL++W P+ G+I F+ AE+ +I Sbjct: 317 KLHQALKQDRLELHYQPKIDLKTDSVIGMEALLRWYDPELGHIPPDRFIPFAEDCGLIND 376 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I +++L + W + + + + +NI+ + + ++++I++T P+ ++ Sbjct: 377 IGVWVLRKACAQARQWNE-VHDLSLRVAVNISPIHISTGGFVDMVRSVIAETGIDPNLLE 435 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 + +E ++ E + +LR++GI+++LDDFGT S L+YL P D +K + + + Sbjct: 436 IEITEMSMLDYTEDLIDTIKQLRELGITISLDDFGTGYSSLNYLKKFPVDVLKIDRAFVR 495 Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID-----------IKELTRMGCDYIQ 936 ++ A++ ++I +A + + L GC+Y+Q Sbjct: 496 DIVPEKSGIAMISAMISLAHALNL-----------QVVAEGVEEEAELNVLREHGCEYVQ 544 Query: 937 DSHVASPLGFNSILKLL 953 + + PL L+ Sbjct: 545 GYYFSKPLSVEDFTNLI 561 >gi|149917917|ref|ZP_01906411.1| hypothetical protein PPSIR1_36879 [Plesiocystis pacifica SIR-1] gi|149821183|gb|EDM80587.1| hypothetical protein PPSIR1_36879 [Plesiocystis pacifica SIR-1] Length = 714 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 148/578 (25%), Positives = 286/578 (49%), Gaps = 8/578 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +V+ + +R +LA+ G+ D +W+WDI R RV + +LGL + Sbjct: 136 SVVAQARNHNALRGRLTELRDRFALAIRGARDGMWEWDIARSRVFYSQRWRELLGLENVH 195 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + WL +H D RT L + + + E R+R Q+ W++ R N Sbjct: 196 IEASLDTWLDRVHPQDIHRLRTDLHNHIQGLSPVHENEHRIRDGHGQWRWVLSRAVIHRN 255 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 ++G LR G DIT+ ++ + I + +D LT +P + +RL ++L+ + D+ Sbjct: 256 NHGKALRVAGSLTDITQYRQREKMIREQSRRDQLTQLPEKPVLFERLARAVELARSHDDF 315 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 +++++ D+ +I D G+A + +L + +R+ ++ D+L R S ++F I+L + Sbjct: 316 EFIMLLVETDRLAQIRDSFGLATANAMLALMAKRLRACVRPEDLLFRFSTHKFAILLENV 375 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ A + ++++ P ++ T SIG S + E++ + A A Sbjct: 376 EDASVGTHVADRIHQALSEPFDIEGERTFTTVSIGMTSSANGYRRVEEVIADVSAATDTA 435 Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR----LMDEEIVGL 738 + RG N E + + + ++ L A++ +L L + PI+R + E V Sbjct: 436 RDRGRNRHEIYDTSMRIEARTLLALEMALRRAIDEDQLSLHFQPIVRVDPEHGERETVAF 495 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 E+L++WDHP+ G +S EF+ +AE+ +I + + + R + WR + MP + + + Sbjct: 496 ESLMRWDHPERGPVSPGEFIPLAEDTGLIIPMGRWAIREAVRRLQRWRREFGMPDLAVSV 555 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++K + D +L E + + ++ +KL +ESV++ + LL +R GI + Sbjct: 556 NLSAKQVADPKLLETVDNALQESGLPGRCLKLELTESVMLDRADEVMALLQDIRDRGIEI 615 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAK 916 +DDFGT S LSYL P D +K + S ++ E+ ++R+I+ +A N++ ++A+ Sbjct: 616 WIDDFGTGYSSLSYLHRFPVDGLKVDRSFVSQLDGSEESETMVRTILNLASNMQLRVVAE 675 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 I E+ ++LTR+GC Q A L + + LK Sbjct: 676 GIETEVQAEQLTRLGCGLFQGWLFARSLPVEKVREHLK 713 >gi|104780510|ref|YP_607008.1| sensory box-containing diguanylate cyclase [Pseudomonas entomophila L48] gi|95109497|emb|CAK14198.1| putative sensory box-containing diguanylate cyclase [Pseudomonas entomophila L48] Length = 860 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 144/623 (23%), Positives = 272/623 (43%), Gaps = 17/623 (2%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 AW LW + L +I ++ L + + Q +L +Q Sbjct: 242 YHLAWDSPEPGRQLLWAVLPPLLGVLLIMGLVLAYLFRHALRSSQAIDQSLLRLQQSNQA 301 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + +R + D +W+ D + + G G N L Sbjct: 302 LEASEQRFRAVAEAASDWIWETDRHHRLTYLSQRFVKVTGYPVEHWLGQPLNQLLAC--- 358 Query: 460 DRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D LDS +L A Q + + R + +G + + G A+D Sbjct: 359 DTTPLLPWLDSQADSDAQQLANLRCNYDDATGQNRYCRVSARSIVF-DGKLAGFRGTASD 417 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT++ + I + D LTG+ NR L L + L ++D+D +K Sbjct: 418 ITDEVAAHARIQHLSMHDALTGLANRNKLSRHLEQALLRGSDSPPLTLL--LLDLDSFKP 475 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD VL + R+ + + D++ARL G+ F ++L + +I F + Sbjct: 476 INDSLGHPAGDAVLQEVANRLRDTTRDDDLVARLGGDEFVLVLHGVDTRSEIDRFCARLL 535 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696 + PI+ ++ + ASIG A + E+++ A++A+Y AK G N F Sbjct: 536 DLLQQPISYEAHQLHIGASIGVAQTRVQGYDAGELIRCADIALYQAKADGKNTWRYFSPE 595 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ R ++ DL A++ E L Y P RL D IV +EAL++W HP+ G + Sbjct: 596 MNQQIQYRRQLENDLRRAIKQHEFVLHYQPRYRLDDLHIVSVEALLRWQHPQEGLLGPDT 655 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I + ++L R W ++ + +N++ +++ ++ Sbjct: 656 FIPLAEQSDLIVPLGRWVLAEACRAARDWPEELL-----VSVNLSPAQFSRSDVVADVRQ 710 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T + R++L +E+V++ + E + + L+++G+ L +DDFGT S L YL Sbjct: 711 VLLETGFPAQRLELEITENVMLNDIEGALGTMLALKELGVRLNMDDFGTGYSSLGYLRTY 770 Query: 877 PFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD++K + + G + A++++II + + + T+ A+ + E ++ L + C Sbjct: 771 PFDSIKIDKRFIAGLSSQSGNDKAVVQAIISLGQAMGLTVTAEGVETEQQLQALGKENCH 830 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 +Q +++ P+ LL R Sbjct: 831 EVQGYYLSKPVDREGFEALLSAR 853 >gi|148548688|ref|YP_001268790.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148512746|gb|ABQ79606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida F1] Length = 562 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 141/562 (25%), Positives = 263/562 (46%), Gaps = 18/562 (3%) Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464 AV + ++ + D+ + +I G + + G L +H + F Sbjct: 5 YRAAVDAA--AIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLH--EPTFF 60 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQK 523 + + V R + E R+ D +W+ + P+ + G + +Y+ I D+TE++ Sbjct: 61 VGMWRALVAGR--VWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKR 118 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + L + D LTG+PNR D L L S + + V ++D+D +K +ND Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAYSRR-EGISLAVCMLDLDGFKAVNDGY 177 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G AVGD +LV + +R+ +L+ D +ARLSG+ F +IL ++ ++ + +++A Sbjct: 178 GHAVGDLLLVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAA 237 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++++ASIG + + ++++A+ AMY AK RG N F Sbjct: 238 PCVVREHTLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQEL 297 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + A+ N EL L Y P + L +++G E L++W P G + +F+ Sbjct: 298 KATHQTVARVRRALRNGELCLYYQPKVNLRSGKVLGFEGLLRWQRPGRGVVPPGDFLPWV 357 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I +++ + + +W+ Q P + +NIA++ L N+ E +Q L++ Sbjct: 358 EQTDLIVEIGEWVIGQALSQLQAWQRQG--QPWSLSVNIAARHLQRNDFAERLQQLLAAY 415 Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P + L ESV + N + L R +G+ +LDDFGT S LSYL +P T Sbjct: 416 PAVDPVLLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQT 475 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + + +A+ ++I +A+ +IA+ + + L +GC+ Q Sbjct: 476 IKIDQSFVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGY 535 Query: 939 HVASPLGFNSILKLLKE-RFPL 959 +A P+ + + + R P+ Sbjct: 536 CIARPMPASDVQAWAQAYRQPV 557 >gi|153950724|ref|YP_001399658.1| sensory box-containing diguanylate cyclase [Yersinia pseudotuberculosis IP 31758] gi|152962219|gb|ABS49680.1| sensory box-containing diguanylate cyclase [Yersinia pseudotuberculosis IP 31758] Length = 855 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 142/573 (24%), Positives = 269/573 (46%), Gaps = 15/573 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ I AT + + ER + D +W+ D +P I G Sbjct: 284 LVIRRAISGAKATDRSRAALAASEERFRHVAESASDWLWETDAELQVTYLSPRFLIISGW 343 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + ++ + + + + R LQ + +A I + Sbjct: 344 SVDHWLGRHLD--SLLNCDITSLRTWLQHTHLTDSRNELQCTY--FSAKGSKRVCRIHAK 399 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ G+I+ + G A+D+T + ++ + I + D LTG+PNR + L L A Sbjct: 400 PII-QQGEIVGFRGTASDLTREIEAEKRIEHLSLHDALTGLPNRTLMTEFLENKLHNLAA 458 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ ++ +++DK+K +ND G GD VL + R+ L+ D+++R G+ F +I Sbjct: 459 VEHP-LVILNVNLDKFKPVNDNFGHVTGDQVLYQVAERLRSCLRDKDLVSRQGGDEFILI 517 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + ++S +I + I MP + E+EI + ASIG + + E+L+ A++A Sbjct: 518 ISDLSSSYEIELLCARVITRIQMPYVINEQEIYLGASIGITLAPQDSMQAEELLRFADIA 577 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGL 738 M AK+ N + I+ + L LAV+ SE L Y P R D +++G Sbjct: 578 MCEAKNSARNRWRFYASEMNDRLMQRIELEKFLRLAVKKSEFCLYYQPRYRTDDMQLIGA 637 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP G + +F+ +AEE +I AI+ + L + +D ++W + + + Sbjct: 638 EALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTLLQACQDAMTWP-----TSLIVSV 692 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI++ + L E ++ + T R++L +E +++ + + + ++ L+ +GI L Sbjct: 693 NISAIEFRGQCLIERVRQALLVTGLPSHRLELEITERIMIEDADGALKIMTALKTLGIRL 752 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S L+YL PFD +K + S + + + +I+ II + I T+IA+ Sbjct: 753 SIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTESHEGQSIVEGIINLGHAISMTVIAE 812 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + + L + CD +Q +A P+ ++ Sbjct: 813 GVETAEQLTYLQSLHCDEVQGYFLAKPMPVEAL 845 >gi|90420690|ref|ZP_01228596.1| putative sensory box/response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90334981|gb|EAS48742.1| putative sensory box/response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 766 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 139/675 (20%), Positives = 279/675 (41%), Gaps = 41/675 (6%) Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG------LWMAITKRL- 362 AR+ L + L + ++ G + +L+ + IG ++ T + Sbjct: 93 FARLALFAGTLLGSVPLVLFAQAGADGRLLIASTCAGLIATGIGLAVVPRAAISFTGPIV 152 Query: 363 DNDIIQPALVGG--------LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS----LA 410 + A G L+ I F I H+ + ERQ L Sbjct: 153 AGSFVALATTGEAFYIFVAVLLAIYSGFIFATIVHLSRLVTMRAASQVELERQQELTNLL 212 Query: 411 V----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D +W+ D + + + + R Sbjct: 213 LNDFEENASDWLWETDGDLRLRHVSARFGEVANTRIADLQDRPLG--ELLPPPVRTGEAH 270 Query: 467 ILDSFVGYRRGRLQYEFRVRAAD--NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 RL + V D W + +P+ ++ G Y G+ +D+T++K Sbjct: 271 AAAMLWSSIGARLPFHKIVLPVDVSGSNRWWALSGKPIIDTAGRFSGYRGVGSDVTQKKT 330 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + + A D LT +PNR F ++L + D +R V+ +D+D +K +ND G Sbjct: 331 TDDRLAYLASHDALTELPNRSLFQEKLAEA--RNGDPDQVRFAVLRLDLDAFKSVNDTFG 388 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 +GD +L ++ R+ +ARL+G+ F I+ + ++ A+ A + I+ P Sbjct: 389 HGIGDALLRNVAGRLLSFADPARTIARLAGDEFA-IVANGHDREAAAELAGHLVDRISAP 447 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRS 702 + + I+V SIG A+ + E+++ A++A+Y K GG + ++ Sbjct: 448 YRIGDLRISVGVSIGVATAPENGS--EEVMRRADVALYRMKQEGGRSFRFYEAQMDEQIE 505 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + + +L A+E E L + P++ I G E L++W HP G + EF+ +AE Sbjct: 506 ECRALTGELRGALERREFILHFQPLVSARAATIEGFEVLLRWQHPTRGLVPPDEFIPLAE 565 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + I + +++ R +W + + +N++ +++ ++ + ++ Sbjct: 566 QSGAIIPLGQWVIREACRIAAAWPS-----KLTVAVNLSPIQFRHSDVVAIVRDALQESG 620 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + R++L +ESV + + +L LR +G+SL+LDDFGT S LSYL PF +K Sbjct: 621 LAAERLELEITESVFLEATQEILDILRTLRGMGVSLSLDDFGTGYSSLSYLRRAPFTKIK 680 Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + + + AI+R+++ + ++ T+ A+ + L GC Q Sbjct: 681 IDRNFVRDLPDAKTDVAIVRAVVQLGTSLGMTVTAEGVETLAQQTCLAEQGCHQFQGYLY 740 Query: 941 ASPLGFNSILKLLKE 955 + P+ + L+++ Sbjct: 741 SRPVPADEAEALIRK 755 >gi|303238578|ref|ZP_07325112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acetivibrio cellulolyticus CD2] gi|302593976|gb|EFL63690.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acetivibrio cellulolyticus CD2] Length = 861 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 166/774 (21%), Positives = 324/774 (41%), Gaps = 35/774 (4%) Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257 + LL MV R + + L + + F + + G + ++ Sbjct: 108 IIFLLLFVFFAVVMVLRKISHLLIYMGIAGTLTMVLL---FAADKPGVSRGIVALFIVLF 164 Query: 258 EIALSSS--LIIFLFMYLHWNRWHAK-VGYITFSGIACI--AILFCMSFYYPMVTASIAR 312 S ++ L + H + + I GI + + + + Sbjct: 165 YTVAFMSMKFKLYTKKELEISEAHYRSLVEIAPLGIIIHKDGEILYTNPVFLEMMGLSKE 224 Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372 + + + ++ I + + L ++I A Sbjct: 225 DNIIGKQIVELIHPDHRNAVKFDIEKRFIRERLDFVEQKLVL------LDGSNIEVEADS 278 Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 + + + + + + + + R + + V+ + V P Sbjct: 279 IEVKHMGKSVVMCIFKDITDRKKTERMLIEAEFRYRGLIESTLVGVFLY--RDKFVYVNP 336 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQ 491 + +L + ++ + IH +D + ++D + G + +FR+ D Sbjct: 337 YLEKLLDYSKEELY--SMSLFDVIHQDD----QYVIDQYNPQCAGTDIIRQFRIIKRDKT 390 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 ++ +G + DI+ KK+ E I A+ D+LT +PNR D L Sbjct: 391 IIFVEAHAINTI-YDGSPTTIV-TLLDISHIKKTEEQIKYIAYHDSLTDLPNRYMLNDYL 448 Query: 552 TTILDLSATDDNLRPTV---MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 ++ D++ V M++D+D++K IND LG + GD VL +R+ + D+ Sbjct: 449 DKVISCGNPDNSTNTAVIGVMLVDLDRFKIINDSLGHSFGDIVLKEAAQRLKSCVGENDV 508 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 + R G+ F I+L ++ K A+ A + + P + +++ T S+G + + Sbjct: 509 VFRYGGDEFVIVLPD-TDTRKCAETAKRITQLFGQPFIINDQKTFSTISVGISLFPEDGS 567 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHP 726 + ++KNA++AMY K G N+ + + S R ++ ++ L A+EN+E L Y P Sbjct: 568 NAEMLIKNADVAMYVVKDIGRNNYQFYHESFNRELLRKMELENGLRKALENNEFVLYYQP 627 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I L ++VGLEALI+W HP++G + +EF+ +AEE +I I ++LE R SW+ Sbjct: 628 QIDLKSGKVVGLEALIRWYHPEYGLVYPAEFIPLAEETGLIVPIGKWVLETACRQNKSWQ 687 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 D I + +N+++ +L ++L + ++ KT P + L +ES +M + E++ Sbjct: 688 DAGLG-NIPVAVNVSAYQILHSDLSSVVSEVLDKTKLDPRCLILEITES-IMQDVEKTDQ 745 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIP 904 ++ L+ + + +DDFGT S +S L FD +K + S + + +I ++ II Sbjct: 746 IINVLKSFNVKVAIDDFGTGYSSISLLKNHQFDILKIDPSFTFDLKKDKNSIDLIKLIID 805 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 A +IIA+ I E K LT GC + Q + + P+ +I + L E P Sbjct: 806 FACQRSYSIIAEGIEDEEQAKILTEKGCTWGQGFYYSKPIPAGTIEEFLSELLP 859 Score = 71.1 bits (173), Expect = 8e-10, Method: Composition-based stats. Identities = 36/323 (11%), Positives = 87/323 (26%), Gaps = 24/323 (7%) Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272 R M + +L + + ++ + Sbjct: 13 TREIMAFRIICLLGAIL--SPLIGVLWHFTYSGDVPIARTNTFFYSSMFTALFG--SIYF 68 Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332 L + F+ I C F + + + + I L V + ++ Sbjct: 69 LSLKNNFIQKNTYIFANIICYTATFVILYVAYIENYNQNIIFLLLFVFFAVVMVLRKISH 128 Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 L+ I + + D + + IV+ + Sbjct: 129 -------------LLIYMGIAGTLTMVLLFAADKPGVSRGIVALFIVLFYTVAFMSMKFK 175 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + V + + + + T P ++GL+ + + Sbjct: 176 LYTKKE-LEISEAHYRSLVEIAPLGII-IHKDGEILYTNPVFLEMMGLSKED-NIIGKQI 232 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + IH + R+ + ++ R E ++ D + + + + Sbjct: 233 VELIHPDHRNAVKFDIEKRFIRERLDF-VEQKLVLLDGSNIEVEADSIEVKHMGKSV--V 289 Query: 513 IGIANDITEQKKSLEGILCNAFQ 535 + I DIT++KK+ E +L A Sbjct: 290 MCIFKDITDRKKT-ERMLIEAEF 311 >gi|229132572|ref|ZP_04261421.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] gi|228650918|gb|EEL06904.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] Length = 800 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 165/761 (21%), Positives = 307/761 (40%), Gaps = 30/761 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + I F + N S + ++ Sbjct: 56 ILFLSIGDVFLSFIFPIIDLLLLLLGISLIFRPAIFNAKSK----LFIFILVLTGLAITD 111 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY---------PMVTASIARITLASI 318 +L+ YL + + + + ++ + ++ + + L Sbjct: 112 YLYFYLQDDLSDRSLILLRCLYRVFLLLIAIAASISKNASSRRNYFIIDPTFGKKLLVIF 171 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 172 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNSD------LTEMLKVF 225 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + V Q S + + ER D + + + + +L Sbjct: 226 NNQLEQKVSQRTEDLINKSNDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 285 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G DR L LQ + + W + Sbjct: 286 GKNSDELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 342 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ + I AF D +TGI NR F L + + Sbjct: 343 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTGIGNRIFFQQELEKSIGRA 401 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 402 QKTQD-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 460 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ + ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 461 IIVHNHT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 519 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + ++ Sbjct: 520 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPKALENNELFLLYQPQVDSKTGMVI 579 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L+ R + W + + Sbjct: 580 GAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKM 638 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I K S I L +E + M + + + L L+ G+ Sbjct: 639 GINLSAIEFEQKDFVQTIISTIEKVGVPASSIDLELTERIAMVDEKETLAKLKALKSYGV 698 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+ +II +A + +I Sbjct: 699 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGNSTDGNEIIHTIISLAHTLNMKVI 758 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + + + L R C IQ + + P+ + +K L Sbjct: 759 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLSR 799 >gi|320352699|ref|YP_004194038.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfobulbus propionicus DSM 2032] gi|320121201|gb|ADW16747.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfobulbus propionicus DSM 2032] Length = 961 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 138/564 (24%), Positives = 257/564 (45%), Gaps = 10/564 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A +F + + + + + ++ D + TI G + G + Sbjct: 399 AEIHFRKSAENFLQIYKRIFDNATEGIFITDQTGKILAVNDAFTTITGYEAHEAIGRNPS 458 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L +D D FR + S + +G + E + D + + I + N IL Sbjct: 459 MLKS-DQHDADFFRQMWQSLI--GKGSWEGEIWNKKKDGTVYPEWLTINSIRNERKQILY 515 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y +I E KK + I A+ D LT +PNR +L + + R V I Sbjct: 516 YFATFYEIGELKKREKQIAFMAYHDILTRLPNRAFLERKLAKTIHDAKQQGG-RMAVFFI 574 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K INDV G GDD+L+ +++R+ +L L RL + F +++ +N I Sbjct: 575 DLDNFKNINDVFGHHQGDDLLLQVSQRLSSILGGAHTLCRLGSDEFILLMERIDNESFIY 634 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A ++ + P L ++I V ASIG + + T+ EM+++A++AM+ AK G N Sbjct: 635 LMANRIQAVLKKPFLLEFKKIYVNASIGISVYPDDGDTAMEMIRSADMAMHRAKREGKNR 694 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F + ++ + + + + E + Y P + + + LEALI+W+ Sbjct: 695 YVLFTKGMHQELYEKFRTENGIRFGLLHREFVVHYQPKVNIDTRKTSSLEALIRWN-KGG 753 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 IS S F+ IAEE +I I LF+LE + ++Q + + +NI+ + + + Sbjct: 754 KLISPSVFIPIAEESSLIDDICLFVLEETCAFHVVMKEQ--DIAVPVSVNISPRQFHNAD 811 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + ++ L+ + +P ++ +E+ M + E + ++ RLR++GI ++DDFGT S Sbjct: 812 FVDLVEDLLGRYQVAPHYLEFEITETTAMKDVEHTLAVMSRLRELGILFSIDDFGTGYSS 871 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 L L +P +T+K + + I+ +II +++ + ++A+ + E + L Sbjct: 872 LGSLNKMPVNTLKIDKQFVDNLDANSG-IIATIIAISQQMHLNVVAEGVETEEQLLGLGA 930 Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953 MGC Q + + P+ IL+ L Sbjct: 931 MGCHEAQGYYFSRPVSDADILRYL 954 >gi|149376152|ref|ZP_01893917.1| Two-component response regulator [Marinobacter algicola DG893] gi|149359557|gb|EDM48016.1| Two-component response regulator [Marinobacter algicola DG893] Length = 858 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 143/560 (25%), Positives = 263/560 (46%), Gaps = 17/560 (3%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 +D + + + + D V P + G + + G +L Sbjct: 297 ADLHLLKRGIEANPNGMLMVDARSPDMPVVYANPAFTEMTGYSYDEVMGSNCRFLQG--- 353 Query: 459 NDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + L++ + + + E D W +RI P+ ++G +IG Sbjct: 354 --EETALEALETIRQGLHHQTEVNVELINYRKDGTPFWNHLRISPVFGNDGLCTHFIGTQ 411 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D+T Q++ I A D LTG+PN SF + L L L V+ +D+D + Sbjct: 412 QDVTHQREQEAQITYQATHDLLTGLPNGVSFQETLHDALIL--DGGRGALAVLYLDLDGF 469 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG VG+ VL+++ RR+ +L +ARL G+ FG++L N ++ A Sbjct: 470 KPINDELGHHVGNQVLITIARRLADLTAPEATVARLVGDEFGLLLPGYTNRKEVTQLAER 529 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + +A PI++ + + ++ASIG A ++ E+L+ A++A AK +G N + Sbjct: 530 ILVHLAKPIDVDGQMVHISASIGIACNSAPLDAPHELLQFADIARERAKRQGKNTWQWHS 589 Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + V ++ DL A+ ++ + Y P++ + + +EAL++W HP G IS Sbjct: 590 GLKAERSQHSVKLRHDLHTALNENQFEIHYQPLVDAVTGRMRSVEALVRWKHPTRGMISP 649 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AE+ I + L++L++ +I + Q + + +NI+S + + + Sbjct: 650 GEFIPLAEQTGQIIPLGLWILKQACIEIADFNAQ-RERGLRVAVNISSLQFIRGGFLDDV 708 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++++T P ++L +ESV++ E L+ L+ +G+ + LDDFGT S LSYL Sbjct: 709 RRVLAETGLPPQLLELEVTESVLLDGAEPVIELMETLKTLGVRVALDDFGTGFSSLSYLR 768 Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P VK + S + +T AI++ +I MA +++ ++A+ I +L R C Sbjct: 769 DLPTHKVKLDRSFVEKTTTDHRIAAIVQGVITMAHHMDMIVVAEGIETREQQDDLARRHC 828 Query: 933 DYIQDSHVASPLGFNSILKL 952 D +Q A P+ + KL Sbjct: 829 DILQGYLFAQPMPLADLKKL 848 Score = 61.9 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 5/175 (2%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417 + PA + G ++ + ++ + E D Sbjct: 133 LLGTFATYYRAPATPTAGAQRNLARGAALVALAILRHRDAENHRTLSEWHRTLFDNHPDA 192 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V+ +D+ + + I G ++G ++G N I + R + D Sbjct: 193 VYTFDLDGRFQSCNKALEKISGYSAGKVYGLHFNLF--IEPDYRPQTQAAFDRARNGE-- 248 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + YE A +++ + P+ G+I+ G+ DI+++K + Sbjct: 249 VITYETIGTHAFGHPYFLEVTNFPVI-IQGEIVGVYGLCRDISDRKHQDADLHLL 302 >gi|229159708|ref|ZP_04287718.1| Sensory box/GGDEF [Bacillus cereus R309803] gi|228623787|gb|EEK80603.1| Sensory box/GGDEF [Bacillus cereus R309803] Length = 569 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 139/566 (24%), Positives = 258/566 (45%), Gaps = 28/566 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460 S +A+ S IV D I + G L H Sbjct: 14 SSLRDLKMALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + F+ + + E R +A D ++W+ I P N G+ ++I I NDI+ Sbjct: 71 KAFFQILWKRISNGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128 Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +K++ + A+ D LT +PNR + + ++ +N+ ++ D+ Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIV-----ENIEFGMIYFDL 183 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K +ND LG +GD +L + R+ +L D+LARL G+ F +L ++ ++ Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKKHTQDEMRQL 242 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A ++ P L E+ ++AS+G S+ +LKN++LAMY AK +G N Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + L A+ + EL + PII L ++ G+EAL + + G Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGVEALARCSTEE-GP 361 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ +AEE +I + ++LE+ R + + + + +N++ + L+ Sbjct: 362 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +++++ +T + P+R+ L +ES+ + + + L +R +G+ + LDDFGT S L Sbjct: 420 LSVRSILRRTGFPPNRLILEITESIAVRHFDYIIATLQEIRSMGVLIALDDFGTGYSSLY 479 Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 YL +P D VK + + + + I++S+I +A ++ ++A+ + L Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYEHAQPERTIVKSVIEIAHSLNLAVVAEGVENVEQESLL 539 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 MGCDY+Q + A PL + + L Sbjct: 540 QSMGCDYVQGFYYAKPLSVGELKEKL 565 >gi|77165235|ref|YP_343760.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrosococcus oceani ATCC 19707] gi|254433836|ref|ZP_05047344.1| PAS fold family [Nitrosococcus oceani AFC27] gi|76883549|gb|ABA58230.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|207090169|gb|EDZ67440.1| PAS fold family [Nitrosococcus oceani AFC27] Length = 700 Score = 509 bits (1311), Expect = e-141, Method: Composition-based stats. Identities = 137/574 (23%), Positives = 252/574 (43%), Gaps = 22/574 (3%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG------LASGSMHG 447 Q + ++ R S + + D+V D+ LG A S+ Sbjct: 137 RRQRQAVENERARLSSILEATPDLVAIMDLEGRIHYMNQAGRQWLGFIKKNHYAGASLLA 196 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 W + + L R G + E + + I N+ Sbjct: 197 HYPLWTASLIRD--TAIPAAL------REGVWEGEAVILNPSGGEIPVSQVILSHRNALN 248 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + IA DI+E+K + + D LT +PNR DRL +L + + L Sbjct: 249 QVEFLSTIARDISERKHYEQELQYRVTHDTLTHLPNRILLRDRLIQVLAHAKRNQRLT-A 307 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ +D+D +K+IND LG GD L +L + ++ D L R G+ F IIL + Sbjct: 308 VLFLDVDNFKQINDGLGHLTGDKCLRTLAHHLAGCIRESDTLGRYGGDEFLIILSDLRSY 367 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + +R +++ P+ L ++ +T SIG + + +LK A+ AM+ AKH Sbjct: 368 SDVETLIKKIRATVSQPLKLNNNDVFITLSIGVSLYPQDGDDEEALLKTADAAMHTAKHS 427 Query: 688 --GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G ++ S+ + ++ DL A+E E L Y P + + +I +EALI+W Sbjct: 428 SPGQCRYYRPEMNVRGSELLALETDLHRALEREEFVLYYQPQLDVTTGQITAVEALIRWQ 487 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G +S +F+ + E+ +I+ + + L R +W Q PI + +N +++ Sbjct: 488 HPNRGLVSPRDFIPLLEQTGLIEEVGKWGLNTACRQAKAWHSQGY--PIRMAVNCSARQF 545 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + + ++ K P+ ++L +ESVVM + + + +L RL+++G++L +DDFGT Sbjct: 546 QQH-FLDIVHQILQKQSLDPAYLELEVTESVVMQDTQSATYILQRLKEMGVTLAIDDFGT 604 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P ++K + S + E+ AI +I+ + ++ ++A+ + E Sbjct: 605 GYSSLAYLKRFPIHSLKIDCSFVRDVTKNEEDAAIAETILLLGNSLGLEVVAEGVETEAQ 664 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ C IQ + P+ + L+ R Sbjct: 665 MRFFQDRHCHRIQGYWIGRPMPAKDLFPLITGRN 698 >gi|121594444|ref|YP_986340.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] gi|120606524|gb|ABM42264.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax sp. JS42] Length = 1047 Score = 509 bits (1311), Expect = e-141, Method: Composition-based stats. Identities = 131/590 (22%), Positives = 256/590 (43%), Gaps = 27/590 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 V+Q + + Q + E + V V I G Sbjct: 466 HLAVVQDISKRKHMEQVLRQSEEPLRNILNHMPVGVNQVQ-DGKIVFRNDRHVQICGYDI 524 Query: 443 GSMHGPIRNWLPYIHIND--RDNFRTILDSF----VGYRRGRLQ-YEFRVRAADNQFHWM 495 + W + + R++ R + + G ++ E + A + Sbjct: 525 RE-APDVDTWWRLVMPDAHQREHAREAWHAACTAALKNPDGAIRTVECVITAKSGVRRAV 583 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + +S+ I D +++K + E + A+ D LTG+PNR+ LDRL L Sbjct: 584 ELSGMILGDSH------IVTMVDQSQRKAAEEEVRYLAYNDPLTGLPNRRLLLDRLEQAL 637 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +SA L VM++D+D +K IN+ G +GD +L + RR+ + + + LAR G+ Sbjct: 638 AMSARHQ-LCGAVMMLDLDNFKTINETQGPDMGDRLLREVARRLRDCVPEDETLARHGGD 696 Query: 616 RFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 F ++L + + + + +I P ++ ++ S+G A + + ++ Sbjct: 697 EFVVVLKDLGADPQEAANRAEEMGQTILAAIRAPFDIDGQQHHTALSVGIAIFRGVRESA 756 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPII 728 E+LK ++LAMY AK G + + F S+R ++ DL ++ +L L Y P + Sbjct: 757 DELLKRSDLAMYEAKAAGRDTLRFFDPQMQAAVSERAALEADLRAGLDAGQLELFYQPKV 816 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 I G EAL++W HP G IS +EF+ +AEE +I + +++ + W Sbjct: 817 DQ--GRITGAEALVRWRHPDRGFISPAEFIPLAEESGLILRVGEWVMRSACAQLAQWSAH 874 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + + + +N++ + + + ++ + R++L +E +++ + E + + Sbjct: 875 PVLGELTVAVNVSPRQFHEGSFVPQVLEALAASGADARRLRLELTEGMLLQDVEDTIAKM 934 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906 +LR G+ +LDDFGT S L+YL +P +K + S + + I R+I+ + Sbjct: 935 VQLRGYGVGFSLDDFGTGYSSLAYLKRLPLHELKIDKSFVRDVLTDPNDAVIARTIVALG 994 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ ++A+ + E L R GC Q ++ PL + L+ +R Sbjct: 995 TSLGLRVVAEGVETEAQRAFLERNGCHAWQGYLLSPPLQAAAFEALVLKR 1044 Score = 83.5 bits (205), Expect = 2e-13, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 4/147 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGL 440 + Q + + R + + D R V +LG Sbjct: 338 LVLRRSQALDHAKETDTALRESEARLRAVFNQAAVGIAQTDSRTGRLVRMNQKFCDLLGY 397 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ + +D L + + E R R D W+ + + Sbjct: 398 SAQELQQMRFQDFS--EPSDLAADLEQLQRMLAGELSEYRMEKRYRRKDGSEVWVDLMVS 455 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527 P+ G ++ + DI+++K + Sbjct: 456 PLRLE-GQPEHHLAVVQDISKRKHMEQ 481 >gi|71906145|ref|YP_283732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71845766|gb|AAZ45262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 952 Score = 509 bits (1311), Expect = e-141, Method: Composition-based stats. Identities = 140/559 (25%), Positives = 246/559 (44%), Gaps = 16/559 (2%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNF 464 R + A S + D + G A G R H D + Sbjct: 398 RLAAAAFESQTAMLVTDANGVILRVNQAFLRDTGYAVEECVGQTPRILRSGRH--DPAFY 455 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + +S G Q E R D + + I + +G++ YIG+ D++E+K Sbjct: 456 QKMWESIRS--SGVWQGEIWDRRKDGSIYPKWLTISAVLGDSGEVTHYIGLHQDVSERKL 513 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + I A+ D +TG+PNR +RL+ ++ N ++ +D+D +K +ND LG Sbjct: 514 AESRIHQLAYYDQVTGLPNRILLQERLSQVMAKCRASSNY-GVLLFVDLDNFKTLNDTLG 572 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA-----MRK 639 VGD +L + + + D +ARL G+ F +I+ A + Sbjct: 573 HNVGDLLLKQVGEVLRRCSRESDTVARLGGDEFAVIMSELGTDPSAAMQGAEAAARYLLS 632 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + L T SIG + + + +++ +LA+Y AK G N V F S Sbjct: 633 ELGRTFQLGNVIHRNTVSIGATLFKGEQESIESLMRQIDLAIYQAKGAGRNTVRFFDPSM 692 Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 +R I+E L A+E + L Y I D I G E L++W HP+ G +S + F Sbjct: 693 EIALRERAAIEEALRYAIEEEQFLLHYQAQI-GEDGRIEGAEVLLRWQHPERGMVSPAIF 751 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE I + ++L++ A + W + M + + +N+++ L + E + + Sbjct: 752 IPLAEETGDIVLLGSWVLKQAAAQLARWAESPVMAGLVLAVNVSAVQLRQPDFVEQVTTV 811 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + P R+KL +ES+++ + E + + L+ IGI +LDDFGT S LSYL +P Sbjct: 812 LREAGADPGRLKLELTESMLVNDVEATIAKMQSLKAIGIGFSLDDFGTGYSSLSYLKRLP 871 Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S + +AI S++ +AK++ +IA+ + E + L +GC Sbjct: 872 LSQLKIDQSFVRDVLVDANDVAIASSVVALAKSLGLGVIAEGVETEAQRELLAGIGCHCY 931 Query: 936 QDSHVASPLGFNSILKLLK 954 Q + PL +L+ Sbjct: 932 QGYLFSRPLPIGDFERLVS 950 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 51/378 (13%), Positives = 116/378 (30%), Gaps = 21/378 (5%) Query: 170 LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL 229 LP + + V++ + + + + N +L+ +A ++ Sbjct: 31 LPSVRFFSTPAQYLPVHTALEFVAMAVACMVFALAWNLRRQPGNSDKILLGAGFLAVCLI 90 Query: 230 -GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG----- 283 ++ + + L+ E I + ++++ ++ L A G Sbjct: 91 DFGHTLSYAGMPDLLTPSGPEKAINFWLAGRYVAAAALL-GIAVLPKRDLSACAGNCLVA 149 Query: 284 -YITFSGIACIAILFCMSFY----YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + + A L ++ P + +I ++ + + +R Sbjct: 150 GVVVVAACAWWLGLMHPQWFPRTFVPGEGLTPFKIGAEYLLAALYALAAWGLLVKAKRTD 209 Query: 339 LLIPAWILIFIWFIGLW---MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395 W+ W GL + + + V V +++ VLA Sbjct: 210 NANLHWLAAAAWVQGLAEMFFTLYGEVTDLFNLLGHVYKAVAYLMVYRAMFDAGVLA--- 266 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + R + D V+ + ++ +LG S+ G + Sbjct: 267 PFREMKLERSRLQALLSAIPDPVFVKNANGVFMSCNKAFERLLGAPEKSILGKTDY--DF 324 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + D FR + R E+ AAD P+ +G + +GI Sbjct: 325 FDKDLADFFREKDRAATAAGRPLSNEEWLEFAADGYSGLFETTKTPLY-LDGQAIGTLGI 383 Query: 516 ANDITEQKKSLEGILCNA 533 A+DIT +K+ + A Sbjct: 384 AHDITRRKRIEADLRLAA 401 >gi|167631722|ref|ZP_02390049.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|170685550|ref|ZP_02876774.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|254685102|ref|ZP_05148962.1| sensory box/GGDEF family protein [Bacillus anthracis str. CNEVA-9066] gi|254743263|ref|ZP_05200948.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B] gi|167532020|gb|EDR94656.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|170670910|gb|EDT21649.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] Length = 828 Score = 509 bits (1311), Expect = e-141, Method: Composition-based stats. Identities = 157/755 (20%), Positives = 307/755 (40%), Gaps = 22/755 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 81 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 137 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 195 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + + L L + + Sbjct: 196 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 255 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q S + + ER D + D + + +LG S Sbjct: 256 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 315 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502 ++ G D+ L +G R + RV+ + + + I P+ Sbjct: 316 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 371 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G + DIT+ K+ + I AF D +T I NR F L ++ + Sbjct: 372 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 430 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID++++K IND +G ++GD VL + +R L LAR+ G+ F +++ Sbjct: 431 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 489 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 490 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 548 Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + +++G EA Sbjct: 549 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 608 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G IS EF+ IAEE I +I + L+ + + W + + IN+ Sbjct: 609 LIRWQHPELGLISPFEFIPIAEEASQIISIGKWTLQEACQQLKEWHSA-GYSNLKMGINL 667 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + + + ++I + + I L +E + M + + + L L+ G+ L++ Sbjct: 668 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 727 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P DT+K + + I+++II +A + +IA+ + Sbjct: 728 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 787 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C IQ + + P+ + + L Sbjct: 788 ETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 822 >gi|324998105|ref|ZP_08119217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudonocardia sp. P1] Length = 737 Score = 509 bits (1311), Expect = e-141, Method: Composition-based stats. Identities = 136/585 (23%), Positives = 252/585 (43%), Gaps = 32/585 (5%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + R + + D + +A +LG G + G R+ +IH Sbjct: 147 ARWRSEARYGAVFENTALGISVADADGTILEANRALAGMLGYPPGELVG--RSVFEFIHP 204 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + +G R G ++ E D + W + + + + +G + + D Sbjct: 205 EDTPEMWPQIQAMLGGRVGHVRMEKSYFRKDGEQVWTQLVVSLIRDPDGTPRHLVAMIED 264 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +TE+ + + A D LTG+PNR F RLT LD + R V +D+D +K Sbjct: 265 VTERHRLQSRLQHQAEHDPLTGLPNRALFFHRLTAALD---AGPDSRVGVCYLDLDGFKA 321 Query: 579 INDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG GD +L ++ +R+ EL +AR+ G+ F +++ + + ++ A Sbjct: 322 VNDTLGHDAGDQLLSAVAQRLHDELGVDGHTVARMGGDEFVVLVEACTGTAQLNAVAERA 381 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKIT---------------SSEMLKNAELAMY 682 + P+ L RE+ V+ASIG W ++E+++ A+ MY Sbjct: 382 LDVVRRPVALRGREVVVSASIGIVVWPVPHDDDPGGPQDTGEARQSGAAELMQAADTTMY 441 Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G + + F + R + + A++ E L Y P++ D + G+EA Sbjct: 442 WAKRDGRDRIAVFDQARHRHDVHLFELAGRMPGALDRGEFDLEYQPLVSFSDGRVAGVEA 501 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L +W + F+ +AE+ +I + L +L R D +W D + +N+ Sbjct: 502 LARWRTADGDRLGPDVFIPLAEQTGLIVPLGLHLLHRACSDARAWVDADPSREFVLSVNV 561 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 A + L + + + ++ +T + ++L +ES +M R L L ++G+ + + Sbjct: 562 AGRQLRQPDAVQRIAGVLERTGWPAHALQLELTESDLMSASGRPVAALQELSRLGVRIAI 621 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---------KRIAILRSIIPMAKNIET 911 DDFGT S L YL +P D +K GS ++ IL ++I +A ++ Sbjct: 622 DDFGTGYSNLVYLHRLPVDVLKLAGSFVSAQDPQAADATREVDSPVILSAMIDLAHSLGL 681 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++A+ + + L +GCD Q +A PL + ++L R Sbjct: 682 RVVAESVETDGQAAHLRSLGCDVGQGWFMAPPLPAREVEQMLDRR 726 >gi|294500576|ref|YP_003564276.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM B1551] gi|294350513|gb|ADE70842.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus megaterium QM B1551] Length = 571 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 144/558 (25%), Positives = 259/558 (46%), Gaps = 20/558 (3%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 LA+ S IV D I + G + H + F+ + Sbjct: 21 ELALNESS-IVAITDSRGFINHVNDKFCEISKYERHELLGQDHRIINSKHHSSL-FFKEL 78 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + E + +A D ++W+ I P + G +Y+ I NDIT++K E Sbjct: 79 WSTIRSGK--VWHGEIKNKAKDGSYYWVDTTIVPFLDERGKPYQYVSIRNDITKRKAYEE 136 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A+ D LT +PNR L + ++ +D+D++K IND LG Sbjct: 137 KIKQMAYYDPLTNLPNRYW--LNKQLKKLLLDRESPELLAILFLDLDRFKSINDTLGHHH 194 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + R+ + + D ++R G+ F ++L S N +I + + K +++P + Sbjct: 195 GDVLLRRVAERLRKCIPSSDFISRHGGDEFILVLHSLKNVEEIEEMTEQIVKEMSLPFYI 254 Query: 648 LEREITVTASIGFASWT----------SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++ + S+G + ++ + ++K A++AMY AK G N E Sbjct: 255 DGDKVLTSTSVGISLFSKECQQHIIPKDADELIDRLIKQADIAMYVAKRNGRNTYEMSSS 314 Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + ++ +L A+E E LVY P+I L ++G EALI+WD K+G + + Sbjct: 315 SSNERIIKTISMENELKYALERHEFQLVYQPLIDLKTSGVIGAEALIRWDSAKFGTVYPN 374 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ I EE+ +I + ++LE + + +W + + I +N++ L + M+ Sbjct: 375 EFLPILEEVGLIVPVGKWVLEEACKQMKAWTELNSKAS-KIGVNVSPIQLKSSRFVAEME 433 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ KT P ++L +ESV + N + S+ +L RLR +G+ + +DDFGT S LSYL + Sbjct: 434 QILKKTDLEPHFLELEITESV-IQNSQESKKVLNRLRSLGVKVAMDDFGTCYSSLSYLKH 492 Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +P +T+K + S + E ++ +II M K + + A+ I E ++ +T GC Sbjct: 493 LPINTLKIDKSFIDELDEVGKVLVETIIQMGKKLNFDLTAEGIENEEQLQFVTEQGCHIG 552 Query: 936 QDSHVASPLGFNSILKLL 953 Q PL + +LL Sbjct: 553 QGYLFDKPLSPEEMSRLL 570 >gi|226939602|ref|YP_002794675.1| hypothetical protein LHK_00673 [Laribacter hongkongensis HLHK9] gi|226714528|gb|ACO73666.1| Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Laribacter hongkongensis HLHK9] Length = 910 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 141/562 (25%), Positives = 257/562 (45%), Gaps = 10/562 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + + S + + D V + G G + G W+ Sbjct: 339 KQAREDELRVAAQVYEQSREGILITDAQHRIVMLNSRCCELTGYTQGEVVGTTPEWMFSE 398 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 F L + + G E +R + Q + +R + G ++ + Sbjct: 399 SQVSTPGFVE-LCRHLDEQGG-WAGELLLRQRNGQLFLAWLTLRTVRL--GTSTYHVCMF 454 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D+++++ + I A+ D LTG+PNR DR L D ++++DID + Sbjct: 455 GDLSDRQAAERRIQYLAYFDTLTGLPNRALLTDRANMALRGVEGDAAPALALLLLDIDHF 514 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG + GD +L S+ +R+ ++ D ++R G+ F ++L N+ + A A Sbjct: 515 KHINDTLGHSTGDQLLQSVAKRLQATVREGDTVSRQGGDEFVVLLPD-ANASRAASVAQE 573 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + + + E +I+V+ SIG A + + K AE+AMY AK G N + F Sbjct: 574 ILRRLGFVCRIGEHDISVSVSIGIAMAPDDGTDFATLSKCAEIAMYRAKQEGRNTLRFFF 633 Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 V + L AVE E+ L Y P + L E+ G+EAL++W HP +G +S Sbjct: 634 PEMQERTLRHVQLTGALRGAVERGEMQLHYQPQVDLQTGELSGVEALLRWTHPLFGAVSP 693 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE +I I ++L AR + W PP+ + +N++ L + + Sbjct: 694 GEFIPLAEESGLIIPIGDWVLRTAARQLADWLRDGL-PPMVMAVNLSVLQFNLPGLAQQI 752 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++S+ P+ ++ +ES+ M PE + + L +G+ ++LDDFGT S L+YL Sbjct: 753 ASILSEAGVPPALFEVELTESMAMTEPEAAIATIDELHSVGVQVSLDDFGTGYSSLAYLK 812 Query: 875 YIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 D +K +GS + S + AI+ +I+ MA+++ +A+ + ++ + +G Sbjct: 813 RFRLDRLKIDGSFVRDADSDPEDRAIVDAIVGMAESLGLATVAEGVETSGQLEVIRALGG 872 Query: 933 DYIQDSHVASPLGFNSILKLLK 954 D +Q ++ PL ++ L+ Sbjct: 873 DAVQGYWISRPLPAAGLVAWLE 894 Score = 65.7 bits (159), Expect = 4e-08, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 45/151 (29%), Gaps = 2/151 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 G +++ L + + + R+ L + S +WD + G + Sbjct: 202 GVAILEDALDNPRWQDELLAGRRRRQLFLDQSVLAAIEWDDGFCVQEWNRAAERMFGFSR 261 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + + R + + + G + D + Sbjct: 262 EEAIGQHAFF--ILPSEVRATLDREVLQSLMRQEGGWHSVNVNQTRDGALIQCEWFNTTL 319 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 +SNG L + DITE++ + + A Sbjct: 320 VDSNGKSLGVTSLVLDITEKQAREDELRVAA 350 >gi|221233629|ref|YP_002516065.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000] gi|220962801|gb|ACL94157.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000] Length = 694 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 136/559 (24%), Positives = 251/559 (44%), Gaps = 14/559 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 D +R ++A+ +V ++D+ +V + + + L +H Sbjct: 143 RAERDRQRLTMALELDDLLVREYDLRTRQVFFSGHAPDLQKY-----CTFKDDPLEIVHP 197 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 DR ++ S EF+++ D W+ + +G + + + D Sbjct: 198 EDRQRCADLVASRKLGEARVF--EFKLKRDDGIETWVRSVGKVFIGQDGQPEKLVNLFKD 255 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT++++ E I AF+D LTG+PNR F R + ++ +++ID+D +K Sbjct: 256 ITDRRRQTEAIETLAFKDPLTGLPNRTLFQHRFQEAVS-ASETLGEMFGLIMIDVDHFKD 314 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD +L L + + D +ARL G+ F +IL + + A++ Sbjct: 315 INDTLGHDAGDALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQ 374 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + PI R T +ASIG A + M+KNA++A+Y AK G N F S Sbjct: 375 DLLRRPIQHGGRSFTASASIGAALHGDLDADPAHMIKNADIALYRAKEAGRNRSIVFEPS 434 Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ D+ A+ +E L Y P++ + + + G EAL++W HP+ G ++ + Sbjct: 435 MRSEVERRLELLRDVRAALTENEFTLYYQPVVDIRENRVAGFEALMRWVHPEQGVLTPAR 494 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 FM E+ + + E + + +W D+ + +NI+S L E +Q Sbjct: 495 FMAAFEDQDLSLKLGDVAFETALKQMRAWLDEGVEFG-RVAVNISSAQFRSGRLAEEIQE 553 Query: 817 LISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +++ R+ + +E+V MG + + RL + G+ + LDDFGT + L+ L Sbjct: 554 RLARWSVPCERLTIEVTENVYMGWGSDLVSETVRRLHEAGVMIALDDFGTGYASLANLRQ 613 Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 P D +K + S + + AI++++I + ++ ++A+ + ++ L R GCD I Sbjct: 614 FPIDRLKIDKSFVQN--GEDEAIVKAVITLGTSMGMKVVAEGVEDAEQLEALARYGCDQI 671 Query: 936 QDSHVASPLGFNSILKLLK 954 Q H P+ + LK Sbjct: 672 QGYHFGRPMPAGEVAGFLK 690 >gi|114563838|ref|YP_751351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114335131|gb|ABI72513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 1451 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 130/563 (23%), Positives = 257/563 (45%), Gaps = 19/563 (3%) Query: 400 IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 I E+ L A+ + ++ + V + I ++ Sbjct: 886 IKQAEEQLRLFARAIENISEGMFILNEKYQFVEVNNACCELAASTKEKFANEILHFSR-- 943 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + ++ + + + + GR E + + M + I + N G+ Y+G+ Sbjct: 944 YP---ASYSEQIRNLLKQQ-GRWSGEIEASKGKDSYFLMELTIDAIYNEQGETSHYVGVF 999 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT +K+ E + D LTG+PNR S L+ ++ ++ T+MV+D+D + Sbjct: 1000 SDITRRKQQEEELRKLTNNDLLTGLPNRSSLQVTLSNLVKK-----DVHHTLMVLDLDNF 1054 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG +GDD+L+ + RI + L RL G+ F +++ + A A Sbjct: 1055 KRINDSLGHQIGDDLLIGVAERIKLAIPKHASLYRLGGDEFALLVDQHPDIGSCAAIATQ 1114 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + L + + SIG + + +L+ A++AMYHAK GGN + + Sbjct: 1115 VINCLKPAFTLNNDSLVLGISIGIVLYPEDEQNEQALLRKADIAMYHAKSGGGNRYQFYS 1174 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + ++ I+ + A+++ + Y P I + + + G+EAL++ +HPK G I Sbjct: 1175 ESLNQNALRQLEIESLIREALKDDLFEVYYQPKIDVKKDRLNGMEALVRLNHPKLGLIGP 1234 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +EF+ +AEE +I I +L + W + + +N++S+ +L + + Sbjct: 1235 NEFIPLAEENGLIVEIGDVVLRKACFAAQKWLELGLFSG-RVAVNLSSRQFALPDLQQRI 1293 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++++ T ++L +E V+ +PE++ ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1294 ESILRLTKLPAKHLELEITEGTVIKDPEQAIKVMQQLAKMGVSLALDDFGTGYSSLSYLK 1353 Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P + +K + + + + ++ SII +A N+ T++ + + + L + C Sbjct: 1354 RFPINCLKIDKTFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEQTAQLNILKALNC 1413 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 + IQ + P+ +L Sbjct: 1414 EEIQGYIYSKPIREADFELMLTA 1436 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 2/159 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L ++ + + ++ + I ER L++ GSGD +WDWDI ++ + + Sbjct: 741 LFILSLIILSFKVIIRRREIQKQIAQSEERLKLSLWGSGDEMWDWDIESGKIYRSNIWGS 800 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L + IH DRD L+ + +RV+A + Q+ W++ Sbjct: 801 -LDFPQDGRRSGNPDEESNIHPLDRDRVTRALNDHFNAITDHFEIAYRVKARNQQWVWIL 859 Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R + + + LR G DI K++ E + A Sbjct: 860 DRAKIVERDQKDVPLRMTGTIKDINNIKQAEEQLRLFAR 898 >gi|187926137|ref|YP_001892482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] gi|241665625|ref|YP_002983984.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] gi|187727891|gb|ACD29055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] gi|240867652|gb|ACS65312.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] Length = 1183 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 137/584 (23%), Positives = 258/584 (44%), Gaps = 24/584 (4%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATI 437 + F +Q + + + V + D + V P + Sbjct: 609 VALFGTMQDITDRRESDEQLRL----LRRVVESVPSGITVADAQQPDFPIVYVNPGFERM 664 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWM 495 G + + G +L + L+ R + +R D Sbjct: 665 TGYRAEEILGRNARFLHSSEPG-----QPALNEVRTALRDESEIRVLLRNFRKDGHAFLN 719 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ ++ G + Y+GI +D+TEQ+ + + +A D+LTG+PNR DR+ + Sbjct: 720 NFLLSPVRDAKGAVTHYVGIQDDVTEQEMTRTRLAQHATIDSLTGLPNRTLLADRVQQSV 779 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +++A R V +++ID++K +ND LG +GD+VL + R+ + D +AR G+ Sbjct: 780 EMAAR-QRSRFYVALVNIDRFKVVNDSLGHLLGDEVLRRVAERLRDAADTVDTVARFGGD 838 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +++ + F A P+ + E+ VTASIG A + + + +++ Sbjct: 839 VFALVISHAGSRGVDFGF-----DLFAEPVRVEGHEVFVTASIGVAEYPAHGADADSLIR 893 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AE+AMY+AK G N +E F S R+ ++ + +E + L+Y P I Sbjct: 894 HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRATLEQGQFRLLYQPQIDTKTG 953 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 + GLEALI+W HP G + + F+ +AEE +I I ++L AR W + Sbjct: 954 RVCGLEALIRWIHPTRGLLPPAAFIPVAEESGLIVEIGNWVLTEAARQRAEWHKRGLADD 1013 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++ + + L + ++L +ES++M ER+ L +R+ Sbjct: 1014 LTLAVNVSPLQFKRGTVLPTLLKLQRQYGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1073 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+YL +P D +K + + + AI +++ +A N+ Sbjct: 1074 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1133 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + L CD +Q + + PL ++ LL+ Sbjct: 1134 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPEAVTALLER 1177 Score = 91.6 bits (226), Expect = 6e-16, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 11/185 (5%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-ERQSLAVLGSG 415 A D G + + + A ER + Sbjct: 318 AARHYATGDFSARVPEHGSSRDELSLLERTFNEMRAAIQRHDATVHRLTERFQRVARATN 377 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLAS----------GSMHGPIRNWLPYIHINDRDNFR 465 D ++DWDI + +LG + G + ++H +D D F Sbjct: 378 DWIFDWDIATGESWANASLHRLLGSDALLGQGDDDGTGGGTSRTLTFQQFVHPDDVDAFA 437 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L + + R Q+ RV A+ + IR + +G +R +G DI+++ Sbjct: 438 HELRTVLNSDRDSWQHVCRVIDANRATRTVEIRASLYRDQDGRAVRMVGGVTDISQRSAI 497 Query: 526 LEGIL 530 + + Sbjct: 498 EQELR 502 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 2/141 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 Q + S +A + W WD++RD T + + + G+ G+ Sbjct: 493 QRSAIEQELRSSEANLRVAEQIALLGSWRWDVLRDSTTWSSGMYVLTGMPPGA-PPAFAQ 551 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R V E + D + W++ R N +++ Sbjct: 552 QAQFFTADSYNRLREAASRAVTEGEA-YSLELEMIRRDGEHRWVLSRGNIERNDRDEVVA 610 Query: 512 YIGIANDITEQKKSLEGILCN 532 G DIT++++S E + Sbjct: 611 LFGTMQDITDRRESDEQLRLL 631 >gi|229590892|ref|YP_002873011.1| putative signaling-like protein [Pseudomonas fluorescens SBW25] gi|229362758|emb|CAY49668.1| putative signalling-related protein [Pseudomonas fluorescens SBW25] Length = 857 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 146/564 (25%), Positives = 273/564 (48%), Gaps = 20/564 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + R V S D VW+ D + + GL + G N L Sbjct: 305 QNALATSEARFRDVVEASSDWVWEIDAGWRFTYLSERFEGVTGLTRYAWIGATMNDLL-- 362 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + ++ RR + + R A Q + R M + G A Sbjct: 363 ---ETESGLLSQWLSAPGRRPDISVQCRYVDAAGQERTTRLSAREMPCG-----GFRGTA 414 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D+TE+ ++ I + D LTG+PNR L L + + ++ +D+D++ Sbjct: 415 TDVTEEVEARRRIEFLSQHDALTGLPNRTRLQAFLDGKLKALPSTEQP-LVMLSLDLDRF 473 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND+LG A GD VL ++ R+ + ++ D++AR+ G+ F +IL ++ Sbjct: 474 KPVNDLLGHAAGDRVLNEVSARLADCVRHGDLVARVGGDEFVLILTDAGTQDEVETLCKR 533 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + +SI I + E+E+ ++ASIG A + ++E+L+ A++A+Y AK G N + Sbjct: 534 LIESIERTIRIDEQEVFISASIGIAIAPNDAREAAELLRYADIALYEAKAAGRNTWRFYS 593 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 +++ +R ++ DL A++++EL L + P R+ D ++VG EAL++W HP G I+ Sbjct: 594 GDMNARIIERRRLESDLRYAIKHAELRLHFQPRYRIADGQMVGAEALVRWQHPVRGLIAP 653 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAEE +I A++ ++LE W + P+F+ +N++ + L E Sbjct: 654 DTFIPIAEESGLILALSDWVLETACVCAAQWPE-----PLFVSVNLSPTEFKRGNLVERT 708 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 Q + + P+R++L +ESV++ + + ++ L+++G+ + +DDFGT S LSYL Sbjct: 709 QQALKSSGIDPARVELEITESVMLEDATGALEVMRTLKQLGVRIAMDDFGTGYSSLSYLR 768 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFD +K + S +T ++ AI+++I+ + + + T+ A+ I + L + C Sbjct: 769 DFPFDGLKIDRSFLTRLEESDDDKAIIQAIVGLGRTLALTVTAEGIETAEHLALLKAVAC 828 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 + Q ++ PL ++ LL Sbjct: 829 EEGQGYFLSRPLDIEALNSLLDVH 852 >gi|283852440|ref|ZP_06369709.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio sp. FW1012B] gi|283572178|gb|EFC20169.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio sp. FW1012B] Length = 814 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 139/553 (25%), Positives = 263/553 (47%), Gaps = 21/553 (3%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGL-----ASGSMHGPIRNWLPYIHINDRDNFR 465 + S + + D + GL + + + L D Sbjct: 260 LSLSAEGFFVIDADGRLRLVNAACTRVFGLCSVPEPGLPLEAALPSELATSLARDASRVI 319 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524 + + +++ + PM + + G+ +DIT++K Sbjct: 320 AWNEPVKKEMTTTIC---------GTDKTLLLSLFPMGIDEASRLAG--GLVSDITDRKH 368 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + AF D LTG+PNR LDR+ ++ S +N + V+ +D+D++K IND LG Sbjct: 369 LENQLAHMAFHDPLTGLPNRSLCLDRIRQAIERSKRRENYQYAVIFLDLDRFKVINDSLG 428 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 +GD +L ++RR+ + ++ D +ARL G+ F ++L ++ +I +R +I+ Sbjct: 429 HHMGDRLLEGVSRRLRDCVRGLDTVARLGGDEFVVLLEETGSNREIIRIVKRIRTAISDI 488 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRS 702 L + +I VT S+G + E+L+NA +A++ AK G N + F Sbjct: 489 FVLCDHDIHVTCSMGIVISPALYDKPEELLRNANIALHRAKGEGRNRFKVFNTRMLEDAI 548 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + ++ DL LA++ E +L Y PI+ L D + G EAL++W P G S EF+ +AE Sbjct: 549 RLMDLENDLRLALKRGEFFLDYQPILALRDRRLTGFEALVRWRRPGKGVASPMEFIPVAE 608 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKT 821 + +I + L++L + + +W+ + + + +N+++K L + E ++ ++ T Sbjct: 609 DTGLIVPLGLWVLGEACQTMAAWQKRFPGAEHLSMSVNLSAKQLAQPTMVEEVERILRAT 668 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P +KL +ESV+M NPE S L L RL+++G+ L++DDFGT S LSYL P DT+ Sbjct: 669 GLDPRTLKLEITESVIMDNPEVSILRLKRLKELGVRLSVDDFGTGYSSLSYLQRFPIDTL 728 Query: 882 KFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 K + + ++ + I+ +++ +A ++ ++A+ + E L C+ Q Sbjct: 729 KVDRAFVSDIEASENRKIVGAVVALAHSLGLDVVAEGVELETQSDVLEGFNCEAGQGFLF 788 Query: 941 ASPLGFNSILKLL 953 + P+ + ++L Sbjct: 789 SRPVCGEDVERML 801 >gi|160900354|ref|YP_001565936.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160365938|gb|ABX37551.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Delftia acidovorans SPH-1] Length = 617 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 144/609 (23%), Positives = 260/609 (42%), Gaps = 53/609 (8%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + + Q + +G + R V A I G A I + Sbjct: 16 SSMMAASLQRSLREQQALLDNAGVGIVFIR-QRVIVRCNQCYADIFGYAGEHALVGINS- 73 Query: 453 LPYIHINDRDNFRTILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 ++H + RD R++ + + R+R D W + R ++ + Sbjct: 74 -EHLHPS-RDELRSLGREAYRTLSAGLSFRTQRRLRRKDGSLFWGELTGRLINPGDAR-E 130 Query: 511 RYIGIANDITEQ---------------------------------------KKSLEGILC 531 I I +DI ++ K E I Sbjct: 131 GSIWIVSDIDDRLRAQQALSQAHELLEQQVRDRTRELSATVENLHREIADRKLDQERIYW 190 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 A D LTG+PNR +R ++L+ +D VM +D+D +K +ND LG VGD + Sbjct: 191 MAHYDALTGLPNRTLLAERSARAIELAKAND-TPLAVMFLDLDHFKHVNDSLGHRVGDAL 249 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 LV + RR+ +++ D +AR+ G+ F ++L N+ A A ++++ + E Sbjct: 250 LVEIARRLRAVVRDRDTVARIGGDEFVLLLPG-ANAQGAARVAGKLQEASRQAYQIDRHE 308 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKE 709 +T+ SIG A + + + A+ AMYHAK G N F + ++ Sbjct: 309 LTIAPSIGIALYPRDGHDIDSLTQAADAAMYHAKQAGRNTYRFFTPQMQAQSLRALQLEN 368 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L A+E ++LYL Y P I L + +EAL++W+HP+ G++S +EF+ +AE+ I Sbjct: 369 ALRRALERNQLYLHYQPQITLSTGRVRSVEALLRWEHPELGSVSPAEFIPVAEDSGQILQ 428 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I ++L + + WR+ + + +N+++ +L E + ++ + ++ Sbjct: 429 IGEWVLRSAMQQLQVWRNAGL-CDLKVAVNLSAIQFHQQQLPEIINRILLDSDLPADSLE 487 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +E V + +P ++ + RLR+ G+ L +DDFGT S LS L +K + S + Sbjct: 488 LELTEGVAIHDPRQATATMDRLREHGVRLAMDDFGTGYSSLSQLKRFQIYKLKIDQSFIQ 547 Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 AI+ +II MA+ + A+ + E ++ L GCD Q H + PL Sbjct: 548 DLDHDSNDRAIVSAIIRMAQALGMQTTAEGVETEAQLEFLREQGCDEAQGYHFSRPLAPE 607 Query: 948 SILKLLKER 956 ++ L+ + Sbjct: 608 ALESFLRSQ 616 >gi|144900567|emb|CAM77431.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 904 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 133/582 (22%), Positives = 252/582 (43%), Gaps = 23/582 (3%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q + I R S D + D + +LG + + G Sbjct: 329 QAISDREQAFSDIQISEARLRTIFDASPDALLISDAQGAITMANSRVEEVLGYMAEDLIG 388 Query: 448 PIRNWL-----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 L H R + D + ++ D + I + + Sbjct: 389 QSIEALVPKSVNSAHSEHRSAYIEAPDRRLMLGGRTIKA----LRKDGSECEVEINLSRV 444 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G + DI+E++++ I +F D+LTG+PNR +DR+ + S D Sbjct: 445 DTDQG--VMIASALRDISERRRAEGKIAELSFFDHLTGLPNRTLLMDRMKLAMTASYRDG 502 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID+D +K +N+ LG +GD +L + R+ ++ D +ARL G+ F ++L+ Sbjct: 503 K-HCALLFIDLDNFKALNETLGHEIGDQLLRDIAPRLVASVREDDTVARLGGDEFLVLLV 561 Query: 623 SENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 + ++ + + ++++ P +L + T SIG + + + ++LK + Sbjct: 562 DLARTESEAANQVEAIGLKIIEALSQPYSLNNQHYVCTPSIGATLFFGHVV-ADDLLKQS 620 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LAMY AK GG + F + I+ DL + + L Y P I + + Sbjct: 621 DLAMYKAKAEGGASIHFFDPKMEEAVIKRAKIEADLRQGLIKKQFLLHYQPQI-FSNGRM 679 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 G+EAL++W HP G + S+F+ +AEE +I + ++LE + + W + + + Sbjct: 680 TGVEALVRWQHPVRGLVPPSDFIPLAEETGLILQLGNWVLEAACKQLAEWATRPELADLT 739 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ + E + +Q +I T +P R+KL +ES++ N + + L+ G Sbjct: 740 VAVNVSVQQFHQPEFVDHIQEVIRVTGANPERLKLELTESMLAENVQDIIKKMFALKADG 799 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913 I +LDDFGT S LSYL +P D +K + S + + I ++I+ +A+++ ++ Sbjct: 800 IGFSLDDFGTGYSSLSYLKQLPLDQLKIDQSFVRDVLTDPSDATIAKTIVNLAQSLGLSV 859 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 IA+ + E L GC Q + PL + + Sbjct: 860 IAEGVETEAQRNFLETSGCHSCQGYFFSRPLPIEEFEEYARR 901 >gi|294141672|ref|YP_003557650.1| sensory box protein [Shewanella violacea DSS12] gi|293328141|dbj|BAJ02872.1| sensory box protein [Shewanella violacea DSS12] Length = 1438 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 134/563 (23%), Positives = 260/563 (46%), Gaps = 19/563 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V + G N+ ++ Sbjct: 875 HAEEQLKLFERAIANISEGMFILDSGFKFVEVNEACCELCLKPRDKFIGEQFNF--DLYP 932 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + ++ + + + + GR + D M + + + + G + Y+G+ +D Sbjct: 933 D---SYSAQIRTILNQQ-GRWSNDVESAKGDGSSFLMELTVDAIYDELGQLSHYVGVFSD 988 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LT +PNR S + L ++ + T+MV+D+D +KK Sbjct: 989 ISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1043 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD++L+ + RI + + + RL G+ F I++ + A A + Sbjct: 1044 INDSLGHQVGDELLIKVAGRIEAAVPYHTSIYRLGGDEFAILVDDNPDIGSSAIIANNVI 1103 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++ P L ++ V SIG + +L+ A++AMYHAK GGN + + S Sbjct: 1104 EAFVTPFELTLDKVVVGMSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1163 Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ + + + + Y I L ++ G+EAL++ +HP+ G I ++ Sbjct: 1164 LNRNAIRQLEVENLIRQGIREDLFEVYYQAKINLKSGKMAGMEALVRLNHPEHGLIPPND 1223 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L++ WR Q + +N++S +L + +++ Sbjct: 1224 FIPLAEENGLIVEIGDIVLKKACFATQKWRSQGIFNG-RVAVNLSSYQFALPDLQQRIES 1282 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE++ ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1283 ILRLTQLPAANLELEITEGTVIKEPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1342 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++A+ + + L + C+ Sbjct: 1343 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVAEGVEDASQLSILKALNCED 1402 Query: 935 IQDSHVASPLGFNSILKLLKERF 957 IQ + P+ KLL + F Sbjct: 1403 IQGFIFSKPVTEAEFTKLLNKEF 1425 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 3/167 (1%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + A +L ++I +++ +L I ER L++ GSGD +WDWD Sbjct: 715 PWWLSPQAKFIYFML-SLIISGLIVKAILRRREVQNQIAKSEERLKLSLWGSGDEMWDWD 773 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I ++ + + L IH D++ T L+ + + Sbjct: 774 IETGQIYRSNIWGS-LEFPRDGQRSGEAGEKSNIHPMDQERVSTALNDHFDGKSDHFEAA 832 Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 +RV+ + W++ R + + + + LR G +I K + E Sbjct: 833 YRVKGKSGDWVWILDRAKIVERDEKDNPLRMTGTIKNINNFKHAEEQ 879 >gi|309779069|ref|ZP_07673836.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] gi|308922134|gb|EFP67764.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA] Length = 957 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 137/584 (23%), Positives = 258/584 (44%), Gaps = 24/584 (4%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATI 437 + F +Q + + + V + D + V P + Sbjct: 383 IALFGTMQDITERRESDEQLRL----LRRVVESVPSGITVADAQQPDLPIVYVNPGFERM 438 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWM 495 G + + G +L + L+ R + +R D Sbjct: 439 TGYRAEEVLGRNARFLHSSEPG-----QPALNEVRTALRDESEIRVLLRNFRKDGHAFLN 493 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + P+ ++ G + Y+GI +D+TEQ+ + + +A D LTG+PNR DR+ + Sbjct: 494 NFLLSPVRDAKGAVTHYVGIQDDVTEQEMTRTRLAQHATIDPLTGLPNRTLLADRVQQSV 553 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 +++A R V +++ID++K +ND LG +GD+VL + R+ + D +AR G+ Sbjct: 554 EMAAR-QRSRFYVALVNIDRFKVVNDSLGHLLGDEVLRRVAERLRDAADTVDTVARFGGD 612 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +++ + F A P+ + E+ VTASIG A + + + +++ Sbjct: 613 VFALVISHAGSRGVDFGF-----DLFAEPVRVEGHEVFVTASIGVAEYPAHGADADSLIR 667 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AE+AMY+AK G N +E F S R+ ++ + A+E + L+Y P I Sbjct: 668 HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEQGQFRLLYQPQIDTQTG 727 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 + GLEALI+W HP G + + F+ +AEE +I I ++L A+ W + Sbjct: 728 RVCGLEALIRWIHPTRGLLPPAAFIPVAEESGLIVEIGNWVLTEAAQQRAEWHKRGLADD 787 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++ + + L + ++L +ES++M ER+ L +R+ Sbjct: 788 LTLAVNVSPLQFKRGTVLPTLLKLQRQYGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 847 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+ + +DDFGT S L+YL +P D +K + + + AI +++ +A N+ Sbjct: 848 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 907 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + A+ + L CD +Q + + PL ++ LL+ Sbjct: 908 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPEAVTALLER 951 Score = 93.1 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 11/185 (5%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-ERQSLAVLGSG 415 A D + G + + + A ER + Sbjct: 92 AARHYATGDFSARVVEHGASRDELSLLERTFNEMRAAIQRHDATVHRLTERFQRVARATN 151 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLAS----------GSMHGPIRNWLPYIHINDRDNFR 465 D ++DWDI + +LG + G + ++H +D D F Sbjct: 152 DWIFDWDIATGESWANASLHRLLGSDALLGPGDDDGAGGGTSRTLTFQQFVHPDDVDAFA 211 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L + + R Q+ RV A+ + IR + +G +R +G DI+++ Sbjct: 212 RELRAVLNSNRDSWQHVCRVIDANRATRTVEIRASLYRDQDGRAVRMVGGVTDISQRSAI 271 Query: 526 LEGIL 530 + + Sbjct: 272 EQELR 276 Score = 81.2 bits (199), Expect = 8e-13, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 2/141 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 Q + S +A + W WD++RD T + + + G+ G+ Sbjct: 267 QRSAIEQELRSSEANLRVAEQIALLGSWRWDVLRDSTTWSSGMYVLTGVPPGA-PPAFAQ 325 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + R V E + D + W++ R N +++ Sbjct: 326 QAQFFTADSYNRLRDAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNERDEVIA 384 Query: 512 YIGIANDITEQKKSLEGILCN 532 G DITE+++S E + Sbjct: 385 LFGTMQDITERRESDEQLRLL 405 >gi|171059969|ref|YP_001792318.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170777414|gb|ACB35553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 810 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 133/575 (23%), Positives = 249/575 (43%), Gaps = 18/575 (3%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + L + + Q + V ++ + G G M G Sbjct: 233 RLALQMDKMRADLKTSFAEQRAILTNIELGVI-FERGGLIQLASRQAERSFGHPPGFMSG 291 Query: 448 PIRNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + I+ D + + GR + E + D W +R+R + + Sbjct: 292 LP---ILAIYPEDARAGIASARAMAAIATGDGRHEEELMLHRRDGSQFWAHLRVRQL-DP 347 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 I + DI+ +K + + AF D LT +PNR+ DRL L SA + Sbjct: 348 AQPQAGCIWVIEDISARKAVEDEVNRLAFYDPLTQLPNRRLLRDRLAQALAASARS-GMH 406 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-- 623 ++ ID+D +K +ND LG A GD +L + +R+ ++ D +ARL G+ F +I+ Sbjct: 407 GALIFIDLDNFKSLNDTLGHARGDQLLKLVGQRLTHCVRESDTVARLGGDEFVVIVQDLG 466 Query: 624 ---ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + + + + ++ P L T SIG + + + ++LK A++A Sbjct: 467 ARLDECATQAEGVGEKILDALNQPYPLDGHVRHSTPSIGITLFADDRDSVDDLLKEADMA 526 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G N + F ++ED+ ++ S L Y P + + I G Sbjct: 527 MYQAKTAGRNTLRFFDADMQAMLVQRAALEEDMRESMRLSHFLLHYQPQV-VGSGRITGA 585 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 E L++W HP G + +EF+ +AE+ +I A+ ++LE + + W Q +M + + + Sbjct: 586 EVLLRWPHPLRGLVPPAEFIPLAEDTNLITALGHWVLETACKTLADWSAQDDMKHLSVSV 645 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++++ + +++ +T P +KL +ES+++ + E + L+ G+ Sbjct: 646 NVSARQFRQPHFVAEVMSILERTGADPHLLKLELTESLLVEDVEDIVAKMSALKSRGVGF 705 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 +LDDFGT S L++L +P D +K + S + +AI R ++ +A ++ T+IA+ Sbjct: 706 SLDDFGTGYSSLAHLKRLPLDQLKIDQSFVRDILTDPNDLAIGRMVVALADSLGLTVIAE 765 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + L ++GCD Q + PL Sbjct: 766 GVELAAQRELLAQIGCDAYQGYLFSRPLPREPFEA 800 >gi|260771498|ref|ZP_05880422.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Vibrio furnissii CIP 102972] gi|260613463|gb|EEX38658.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Vibrio furnissii CIP 102972] Length = 1097 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 139/565 (24%), Positives = 250/565 (44%), Gaps = 16/565 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + V G D + D +T I G G + L Sbjct: 536 AEKALSDKSRQMEAVVEGLLDGIITIDGRGKILTFNQAAQEIFGYTEDETLGKNISMLMG 595 Query: 456 I-HINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 H D++ + ++ V GR++ E D + + G++ +I Sbjct: 596 SPHREHHDSYLSNYIERGVSEITGRIR-ELEALRKDGSMFPIEL-GIVEVQMAGEV-NFI 652 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 G+ DITE+K+ I AF D LT +PNR+ LDRLT ++ S N + +D+ Sbjct: 653 GVVRDITERKQRENEIHQLAFYDPLTLLPNRRLLLDRLTEAINHSVRTRNFS-ALFFLDL 711 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----L 628 D +K +ND G GD +L + R+ ++ D +ARL G+ F II ++ Sbjct: 712 DNFKNLNDSAGHNKGDLLLGQVAERLVNSVRQGDTVARLGGDEFVIIASDLSHEPTLAAN 771 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + A + ++ NL +ASIG + S + ++LK A++AMY AK+ G Sbjct: 772 QAERLAQKIVSNLTREYNLDGLTYNSSASIGVTLFNSENLPKEDLLKQADMAMYKAKYAG 831 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N V+ F S I DL A+++ + L Y + ++ +G+E L++W H Sbjct: 832 RNGVQFFDPQMQVSVSSRASIVSDLYSAIQSQQFVLFYQKQVNH-LKQCIGVEVLLRWIH 890 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G +S +F+ +AEE +I I ++LE + W ++ + I +NI+ Sbjct: 891 PEKGMVSPLQFIPLAEETGLIVPIGEWVLEEACATLAKWSLESEKQHLSIAVNISVVQFS 950 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 + + + + + +P +KL +E+++ N + + L++ G++ ++DDFGT Sbjct: 951 KDNFVQTVLNALKTSGANPQLLKLEITETLLANNIPDVKAKMKELQQHGVTFSIDDFGTG 1010 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL +P + +K + + + AI +++I +A +IE +IA+ + E Sbjct: 1011 YSSLSYLKQLPINQLKIDQGFVRDIINSSNDRAIAQAVITLADSIELQVIAEGVETEAQR 1070 Query: 925 KELTRMGCDYIQDSHVASPLGFNSI 949 L MGC Q P + Sbjct: 1071 ALLQSMGCHTYQGYLYGKPCRIEEL 1095 Score = 89.6 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 2/128 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPY 455 + I + + + W ++I + A +LG + R W Sbjct: 406 EELIRNSQNLLKAVIDANNIGTWHFNIQTGELIINDKWAALLGYTLSELLPANRYTWERL 465 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIG 514 H +D TIL+ V + R++ + ++ W+ R R +G L +G Sbjct: 466 THPDDLAYCTTILEKHVSGLIPIYEANLRMKHKNGEWIWINTRGRISSRTYDGKALWLLG 525 Query: 515 IANDITEQ 522 DI +Q Sbjct: 526 THFDINDQ 533 Score = 71.5 bits (174), Expect = 7e-10, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 4/181 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + ++ I + V+ S+ R Sbjct: 230 LVECLKQAFCNNDVIHHNYTFEKSNQSFEARYKKIDDNEVLVVIRNTSAQVEAQSEIRRL 289 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR-T 466 S + + V D+ + + + G + M G + D D Sbjct: 290 SEVARQTTNGVVITDVKGRVIWINEAFSFLTGYSIEEMQGKKPG--ELLQGEDTDPATVA 347 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I+ + + G + + +W+ I P+ + +G + YI I DIT++K+ Sbjct: 348 IMRDALAQQNG-FNVDVVNYSKAQNSYWVRIACNPLFSESGSLSGYIAIETDITKEKQDE 406 Query: 527 E 527 E Sbjct: 407 E 407 >gi|302879088|ref|YP_003847652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581877|gb|ADL55888.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 1138 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 154/577 (26%), Positives = 271/577 (46%), Gaps = 18/577 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM-HGPI 449 ++ I + + + D V D+ + G + + Sbjct: 559 ERKKSAEAIERSEAKLHILFDSNSDAVLMLDMQG-FFDCNKAALRLFGCATTEELCKHHP 617 Query: 450 RNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNG 507 + P N D+ + R G Q+E+ + D Q + + M +G Sbjct: 618 ADMSPATQPNGIDSLTLANEYIATATRDGNAQFEWLHKRMDSGQSFPADVLLSSMK-LDG 676 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ DITE+KKS I+ AF D LTG+PNR+ +DRL L + +D Sbjct: 677 RVV-LQATVRDITERKKSESEIVRLAFYDPLTGLPNRRLLMDRLQHALTSNLRNDK-HGA 734 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ ID+D +K +ND G AVGD +LV + +R+ ++ D +ARL G+ F ++L + ++ Sbjct: 735 ILFIDLDNFKSLNDTKGHAVGDLLLVEVAQRLKGCVREEDTVARLGGDEFVVLLDNLSHG 794 Query: 628 LKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 A A + +++ + L E + SIG A + + + E+LK A+ AMY Sbjct: 795 HDNAGAHTKRVAEKILQALNLSYMLQGYEYHSSPSIGVALFCADASSPDELLKRADSAMY 854 Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 +K G N V + + R ++ L A+E +L L Y + D + VG E Sbjct: 855 QSKAAGRNTVRFYDERTQALLLARAELEHALHHALEQQQLMLYYQVQVN-ADYQPVGAEV 913 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP G IS ++F+ +AEE MI I ++LE+ + W + + +N+ Sbjct: 914 LLRWFHPVLGMISPAQFIPLAEESGMIIPIGYWVLEQACDQLKRWASDVFKCDLVLAVNV 973 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + + + + +QAL++ + SP R+KL +ES+++ + E + +L+KIG++ ++ Sbjct: 974 SIRQFHEADFAQKVQALVTDSGISPDRLKLEITESMLVHDVENIIATMQQLKKIGLNFSM 1033 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LS + +P D +K + S + E AI+R+II MA++++ IIA+ I Sbjct: 1034 DDFGTGYSSLSSIKRLPLDQLKIDQSFVRDIGHDEHDKAIVRTIIAMAQSMKLNIIAEGI 1093 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E + L GC Q + P+ + LL Sbjct: 1094 ETEQQRRLLALKGCTNYQGYLFSKPVPLSDFEGLLSR 1130 Score = 78.8 bits (193), Expect = 5e-12, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 6/149 (4%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 +LI + + A+ S+ I + + Q A+ IV D+ I Sbjct: 422 LLISRESQEKLAASEAHSKRIAEELQYQKFALDE-HAIVSVTDVTGTITDVNERFCQISQ 480 Query: 440 LASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + + G L H + F+ + + + E RA D +W+ + Sbjct: 481 YSREELIGKNHKMLNSGWHP--KGFFKAMYRAITRGQ--VWNDEVCNRAKDGSLYWLDMT 536 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527 + P + G +YIGI DITE+KKS E Sbjct: 537 VVPFMDECGKPYKYIGIRTDITERKKSAE 565 >gi|212637394|ref|YP_002313919.1| sensory box/GGDEF/EAL domain-containing protein [Shewanella piezotolerans WP3] gi|212558878|gb|ACJ31332.1| Sensory box/GGDEF/EAL domain protein [Shewanella piezotolerans WP3] Length = 710 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 162/688 (23%), Positives = 297/688 (43%), Gaps = 19/688 (2%) Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331 L R K +T S I+ I++ + Y + ++ + S+ ++ Sbjct: 1 MLTMKRHTLKPWQLTLSFISVISLCLAIYLYIAKPSLNMTLLFTISLFCLANIAVLSVS- 59 Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV-ILIGFTVIQHV 390 + L+ + + L+ L V + F+ +Q + Sbjct: 60 -----SFQLLSITPRVRHLTNCVRRWSNGDLNTRNRIGDYGELSYLEVELNHMFSRLQDI 114 Query: 391 LATGYFSQGIFSDGERQSLA-VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 A + +Q A + + ++ D + P +LG S Sbjct: 115 SAKEHHNQQTILGKNHLLTAILDSAAAAIYGVDENGRCIFANPQCVKLLGYRSEEQL-IA 173 Query: 450 RNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 N IH +D + + + R L+ + AD + PM+ ++ Sbjct: 174 CNMRSLIHQNPDDVNAIVSSIIDQEDKRDDNLKEDH-FWRADGSSFPVEYWSHPMTLNDN 232 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + + +D +E+ +S I A D LT +PNR L RL ++D SA + Sbjct: 233 K-MGAVISFHDNSERLESEALIRHQAHYDALTDLPNRFLALRRLEQLVDASARSGKM-LA 290 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ +D+D +KKIND LG GD +L++ R+ + + D + RL G+ F I+L +++ Sbjct: 291 VIFLDLDDFKKINDSLGHEAGDQLLITAADRLMKATRKEDTVGRLGGDEFIILLDGLSSA 350 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + P + R++ +TASIG A + + T SE+L+NA+ AMYH K Sbjct: 351 NDAQPLAENLIGGFRKPFYIDNRQLILTASIGIAIYPNDGKTPSELLRNADSAMYHTKSI 410 Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N F + + + +E + A+E EL + Y + + D I+G EAL++WD Sbjct: 411 GRNTYSYFTHAMNKEVSRRLAIEEQIHGALERGELQVHYQIQLDIRDGSIMGAEALLRWD 470 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 +P G +S +EF+ IAE+ +I+ + F+L R ++W+ N + IN++ + Sbjct: 471 NPVLGIVSPAEFIPIAEQTGVIEPMGEFILHRALETALTWQQTFNDE-FRVAINLSPRQF 529 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + L + + +++ P ++L +E V++ + L L K G +++DDFGT Sbjct: 530 RNPNLVQLINDCVNQLGMKPKDLELEITEGVLLSGHAYTLDALMALSKAGFCISMDDFGT 589 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PF +K + S + ++ + I MA + +IA+ + + Sbjct: 590 GYSSLSYLRTYPFQILKIDRSFIKDMNTDDTSKELIIATIEMAHALGIRVIAEGVETQEQ 649 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951 EL+ M CDY Q ++ P+ + +LK Sbjct: 650 FDELSFMMCDYAQGFLISKPVVLDELLK 677 >gi|319763987|ref|YP_004127924.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317118548|gb|ADV01037.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 826 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 128/578 (22%), Positives = 259/578 (44%), Gaps = 10/578 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + + + S D ++ D P +LG A+ + G Sbjct: 241 YSFRDISRQAEVQAGLRLAARVFESSLDAIFIADERHAVARINPGCEQLLGAAAQGVVGR 300 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + L + +D + F + G + E R+R +++ + + + + G Sbjct: 301 LVTTLFAMAQDDAE-FMAEVRQGWEQ-AGFWEGELRLRQEEDEHCCVQLSWVALRDDAGA 358 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + IG D++ Q + + I A+ D LTG+PNR R+ ++ ++ + Sbjct: 359 VAQSIGFMRDLSVQHAAQKRIEELAYSDVLTGLPNRLPLNKRVAAAIE-ASRGHGGGFAI 417 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D++K +ND LG GD VL + R+ L+ D+L RL G+ F I L ++ Sbjct: 418 LFLDLDRFKNVNDSLGHPFGDRVLKLVAERLQGCLRQSDMLCRLGGDEFVIYLHD-ADAA 476 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A +++ + P L E ++ SIG + + T +++K+A+ AMY K RG Sbjct: 477 IAESVARRVQEEMLRPFMLDEMGFSIQCSIGMSLYPQDGDTLDDLIKHADTAMYRVKERG 536 Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 ++ R+ ++ + A+ + + + Y P + + IVG EAL +W Sbjct: 537 RGSYGFYQPQMNAHLLSRMKMEHAMRQALSHGHIEVHYQPQVDMATGRIVGAEALARWTD 596 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P++G +S F+ +AEE I + +++E+ R+ W P+ + +N+++ + Sbjct: 597 PEFGVVSPGTFVPLAEESGYIVTLGAWVMEQAVREAAHW--MGCGTPMVVSVNVSALEFR 654 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 E + AL+++ ++L +ESV++ + + + +L L ++G+ L++DDFGT Sbjct: 655 QAGFVERISALLAQYGLPARWLELELTESVLLQDAQEMQQVLDALARLGVGLSIDDFGTG 714 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L+YL + +K + S + G AI+++I+ M + + ++A+ + + Sbjct: 715 YSSLAYLKKLTIHRLKIDKSFVGGLPGDGGDCAIVQAIVSMGRALRIGVVAEGVETQAQR 774 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 + L MGCD Q A + + E K Sbjct: 775 QALQGMGCDCYQGFLCAPAMPAADFRARMAEPATGAKR 812 Score = 43.0 bits (100), Expect = 0.22, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 65/265 (24%), Gaps = 28/265 (10%) Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 S A + ++ I A+ L GM L+ + Sbjct: 7 SFAAIWNGIDLAAWLVDGHALQIRHANEAAARLVGRSVADMEGM----PVHGLVVTPEDL 62 Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG--------------FTVIQHVLAT 393 W + ++ G LV + + +Q Sbjct: 63 IFWGQSHAGIAAGIHSHTWVRNMHSGNLVPVDRRVLAIQASEGDPADRYLLLTMQDRSEH 122 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + S + + D V ++ + +A I L + + Sbjct: 123 EASQRELESLLSELRATLDSAADGVLTCNLHGEIRAFNQRLAQIWQLPR-ELLLRRDDAA 181 Query: 454 PYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 +H+ D + +R L + +R + R P G Sbjct: 182 IRVHMESQVLDAEAYRLRLAAIAHEPMLETTDILHLRNG----MTVEQRSVPQL-IQGRP 236 Query: 510 LRYIGIANDITEQKKSLEGILCNAF 534 + DI+ Q + G+ A Sbjct: 237 AGRVYSFRDISRQAEVQAGLRLAAR 261 >gi|332672139|ref|YP_004455147.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484] gi|332341177|gb|AEE47760.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cellulomonas fimi ATCC 484] Length = 1095 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 139/602 (23%), Positives = 264/602 (43%), Gaps = 28/602 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV----RDRVTTTPDIATILG 439 V A+ + ER LA + V D + + ILG Sbjct: 493 IIVATDRTASIAREAELARSEERFRLAFDNAPVGVALLDARPGAVGRVLRVNRALCEILG 552 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G + +H + LD V + E R + W+ + + Sbjct: 553 FDEVELLGV--DLTALVHPESLPDLLDALDILVDGTVSSERLEHRYTSGAGDDVWVQMNL 610 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + +G IG DITE++++ + NA D+LT +PNR +RL L + Sbjct: 611 ALVRDGDGAPDYLIGQFADITERRRAEAELTHNALHDSLTSLPNRALLTERLDRALARAG 670 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 D V+ +D+D +K +ND LG A GD++LV + RR+ +++ D ARL G+ F + Sbjct: 671 RD-GTTVAVLYLDLDNFKDVNDSLGHAAGDELLVHIGRRLTTVMRETDTAARLGGDEFVV 729 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I + + + +++A+ + + R +TV+ASIG A TS S ++L+ A++ Sbjct: 730 ICEDLTSLEDVGAVTHRITQALAVQVPIAGRMVTVSASIGIAHSTSGHDRSEDLLRAADI 789 Query: 680 AMYHAKHRGGNHVES--FRVSSFRSDRVMIKEDLCLAVE-----------------NSEL 720 AMY AK G + E ++ ++ DL A++ + +L Sbjct: 790 AMYRAKANGRSRYEFADPHTQVRAVRQLELESDLRSALDLQSHPSLPPTGQPFRRGDDQL 849 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P ++V +EALI+W+HP G +S +F+ +AE+ ++ + L++L Sbjct: 850 LLDYQPCFDARTGQLVAVEALIRWEHPARGRLSPGDFLDVAEDRDLMVPLGLWVLRAACA 909 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 W I +N++S+ L +E + ++++T P ++ + +E + + Sbjct: 910 QAAGWHRAYGPRCPEIWVNVSSRQLGRHEFSARLADVLAETGLPPEKLCVELTERQALSS 969 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAI 898 + L L +G+ L +DDFGT + L YL +P +K + S + G A+ Sbjct: 970 AHSTLADLHALPGLGVRLAIDDFGTGYAGLDYLRRLPVSCLKVDASYVASLGVDSTGTAV 1029 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 ++ + ++ T++A+ + + +G D +Q +A P G + + +LL ++ Sbjct: 1030 AAGVVNFGRALDLTVVAEGVETPQQRDMIVDLGADVLQGFLLARPAGPDVVDRLLHDQAC 1089 Query: 959 LV 960 + Sbjct: 1090 VT 1091 Score = 61.5 bits (148), Expect = 7e-07, Method: Composition-based stats. Identities = 26/259 (10%), Positives = 59/259 (22%), Gaps = 20/259 (7%) Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349 L + A L ++ + A ++ Sbjct: 128 AVAAFALSGAGVLQADPAGVVVAANPAMSSLAGGAPLVGRALVHLVTARERAQVRDVVAA 187 Query: 350 W----FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 +A+ R + + ++ L Q Sbjct: 188 LADGRLDTADLALELRTPDGTRAVRASATVERAPDGSPLRLLLVALDDTQARQTAREQAA 247 Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---PYIHIN 459 R A V D + D + G + G L H + Sbjct: 248 RAQSACALVAAMPDAILVCDRSGTIREVNRQAEVLFGYTPEELVGLPVETLVPVSRAHSH 307 Query: 460 D--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 D R + + + R + + + + ++G + Sbjct: 308 DWLRKRYTAAAHAQPMSTGPGIAA----RTKGGAEVPVEVSLAAVDLADGP--GVVASVR 361 Query: 518 DITEQKKSLEGILCNAFQD 536 D+T+ +++L+ + A D Sbjct: 362 DVTQSRRTLDDLR--ASHD 378 Score = 43.0 bits (100), Expect = 0.25, Method: Composition-based stats. Identities = 12/146 (8%), Positives = 41/146 (28%), Gaps = 9/146 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V + + + + + + + + + D+ + + +LG ++ Sbjct: 357 VASVRDVTQSRRTLDDLRASHDLIAGILSAATEQAIIATDLDGNVELYSAGAERLLGWSA 416 Query: 443 GSMHGPIRNWLPYIHIN-------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + G + D + + + + R + + Sbjct: 417 QEVLGGPAARFDSPAADLSTDWGLDPEAPLEARVRELVGSGVATTHPWIYRTKSGEDRAV 476 Query: 496 IIRIRPMSNSNGDILRYIGIANDITE 521 ++ + G I +A D T Sbjct: 477 LVSVTVRRGPAG-PTGLIIVATDRTA 501 >gi|170721412|ref|YP_001749100.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] gi|169759415|gb|ACA72731.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida W619] Length = 699 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 149/571 (26%), Positives = 250/571 (43%), Gaps = 15/571 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLA 441 ++Q +SQ + + + V D+ R+ + G Sbjct: 129 ELELLQAKELAEQYSQEMTKLSQFLDSVIANIPASVIVQDLESQRILLANQQAERLFGGR 188 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 SM G + + D L +G E V A + R Sbjct: 189 GRSMIGRLPG--ECLAPAAADYLEQQLARGARNPKG-YAAETCVDTACG-PRTLRSRALL 244 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N G + +A D TE+ + I A D LTG+PNR F +RL L + Sbjct: 245 SQNREGQADYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFNERLKQALVRGHQN 304 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 D L + +D+D +K IND LG A GD +L +L +R+ L+ D LARL G+ F ++L Sbjct: 305 DKLTAALC-LDLDNFKNINDSLGHAFGDKLLRALGKRLRRELREQDTLARLGGDEFAVVL 363 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + ++I P + + TV SIG A + ++L A++A+ Sbjct: 364 TGLDGREAACNTAKRLIEAICPPFQIEGHQFTVGVSIGIAIAPDDNEQAEQLLGYADMAL 423 Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N E F V R +++ DL A+ +L+L Y PI+ + G E Sbjct: 424 YEAKRNGRNRYECFHVELDVAARQRRLVETDLRTALHLGQLHLHYQPIVDQQTSSVTGYE 483 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP G + +F+ IAEE +I + L ++ SW + + +N Sbjct: 484 ALLRWEHPTRGMVMPMDFIPIAEETGLIHELGTRALNLACQEAASWDSEQ-----TVSVN 538 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ + L + ++ + +P R++L +ESV++GN E + L L+ +G+S++ Sbjct: 539 LSPVQFKNANLVHTVALALADSGLAPQRLELEITESVLLGNSEENVRTLRALKDLGVSIS 598 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKD 917 LDDFGT S L YL PFD +K + S + + R A I+R+I ++ ++ A+ Sbjct: 599 LDDFGTGYSSLGYLRSFPFDRIKIDKSFVHDMCDSREAMSIVRAITELSNSLMIKTTAEG 658 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + E ++ L GC + Q P+ Sbjct: 659 VESEEQMQRLAAEGCSHFQGYLYGRPVPAGE 689 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 43/129 (33%), Gaps = 9/129 (6%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 L + D ++ P G + + G + + + Sbjct: 11 YRLLIQSVVDYAIYLLTPDGIVANWNPGAQRAKGYLADEIIGKHYSLFYS----EAERVA 66 Query: 466 TILDSFVGYRRGRLQYE---FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + + R ++E R+R D + I + + NG ++ + + DI+E+ Sbjct: 67 GLPEQNLAQARDTGRFEEIGARLR-KDGSTFHAHVVIEAVRDDNGHLIGFAKVTRDISER 125 Query: 523 KKSLEGILC 531 ++ +L Sbjct: 126 RQQELELLQ 134 >gi|300311453|ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] gi|300074238|gb|ADJ63637.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 162/607 (26%), Positives = 275/607 (45%), Gaps = 19/607 (3%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413 R +D + L + L+ I + E+Q+ + Sbjct: 73 FVFPPLTRPYSDQERQRLAMLAAFLGRLMQGR--ADTEQRVRALDQIEAKLEQQAQILNQ 130 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 + V D + + G ++ G RN L D + L Sbjct: 131 MHESVITMDPAGFITSWNRGAEQLFGYSAMEAIG--RNVLFLYENEDEE---DSLHDLFL 185 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 GR + E R R + W + + M + NG + IG NDITE+K + + I A Sbjct: 186 EHGGR-EMEVRRRKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEKLIHHLA 244 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 + D LTG+PNR + L+ + +NL VM ID++++K IND LG GD +LV Sbjct: 245 YYDALTGLPNRTLLTRTVDQALEEA-RHENLHGCVMFIDLNRFKPINDTLGHVAGDMLLV 303 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + R+ L+ D++ARL + F + L + A A + P + E+ Sbjct: 304 EVAMRLRRALREQDVVARLGADEFAVALFGI-DKDSPAYVAQKLLALFDDPFFIDGHELR 362 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-----RGGNHVESFRVSSFRSDRVMIK 708 V ASIG + + + + +L+ A++AMY AK GG S ++ D + I+ Sbjct: 363 VGASIGVSLYPENATDTETLLRLADIAMYRAKQGGENNEGGYACYSEEMNRNTLDLLRIE 422 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 L A E +EL L Y P + + I G EAL++W HP+ G + EF+ IAEE +I Sbjct: 423 TGLLHAFEYNELLLYYQPKVDMQTLAITGAEALVRWQHPERGLLLPGEFIPIAEETGLIV 482 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 ++ ++L+ + R +W+D PPI I +N+ +++ L + + A + + + S + Sbjct: 483 QLSDWVLDAVCRQARAWKDAGL-PPIRIALNVTAREFTR-SLPDRVGAALERHMLSGEWL 540 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +ES++M + +R ++ ++ +GI+++LDDFGT S LSYL P +T+K + S Sbjct: 541 ELEITESMLMHSTDRVISIMEKICGLGITVSLDDFGTGYSSLSYLKRFPINTLKIDRSFT 600 Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 G AI +II +AK + +IA+ + E L GC+ +Q + P+ Sbjct: 601 MGIPDDTNDCAIASAIIGIAKQLRHKVIAEGVEDEKQFNFLREAGCNELQGYIFSRPVPA 660 Query: 947 NSILKLL 953 +L Sbjct: 661 PDFHAML 667 >gi|228927591|ref|ZP_04090643.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229122073|ref|ZP_04251289.1| Sensory box/GGDEF [Bacillus cereus 95/8201] gi|228661416|gb|EEL17040.1| Sensory box/GGDEF [Bacillus cereus 95/8201] gi|228832071|gb|EEM77656.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 785 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 158/755 (20%), Positives = 307/755 (40%), Gaps = 22/755 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 38 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 94 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 152 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + + L L + + Sbjct: 153 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 212 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q S + + ER D + D + + +LG S Sbjct: 213 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 272 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502 ++ G D+ L +G R + RV+ + + + I P+ Sbjct: 273 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 328 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G + DIT+ K+ + I AF D +T I NR F L ++ + Sbjct: 329 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 387 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID++++K IND +G ++GD VL + +R L LAR+ G+ F +++ Sbjct: 388 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 446 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 447 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 505 Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + +++G EA Sbjct: 506 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 565 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G IS EF+ IAEE I +I + L+ R + W + + IN+ Sbjct: 566 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKMGINL 624 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + + + ++I + + I L +E + M + + + L L+ G+ L++ Sbjct: 625 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 684 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P DT+K + + I+++II +A + +IA+ + Sbjct: 685 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 744 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C IQ + + P ++ + L Sbjct: 745 ETKEQLTVLQQNACYLIQGYYYSKPANEDAFINFL 779 >gi|311694580|gb|ADP97453.1| sensory box/GGDEF family protein [marine bacterium HP15] Length = 685 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 143/571 (25%), Positives = 265/571 (46%), Gaps = 17/571 (2%) Query: 392 ATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + ++ ++ E + AV + ++ D +LG A + G + Sbjct: 116 SGRDITERRQAERELRLTQFAVDHARGAMFQIDADGRVRYANRAACDMLGYAREDLTGRL 175 Query: 450 RNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L I + R L RL E R +D + + + G+ Sbjct: 176 ---LSDIDPTMTEGVWREHLHELKAQGSARL--ESLARRSDGGLIPIEVTATYI-EYEGE 229 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + +D+T ++ S E I D LT +PNR + +RL ++ + N + Sbjct: 230 PVSF-SYVDDLTARRASEERIHYLTRFDGLTRLPNRTALHERLEQAIESAQ-HSNSSVAL 287 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +++ +D+ +ND LG A GD+VL ++ R+ + P +AR+ G+ F I+ ++ Sbjct: 288 LIVGLDRLGLVNDALGHAGGDEVLRAIAERLSACAETPATVARIGGDEFAIMYTTDTQQD 347 Query: 629 -KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + + +S++ P+ + ++EI +T SIG A++ + S E+ KNA A+ AK R Sbjct: 348 LHAEYWIQRILESVSEPLRIDDQEICLTCSIGSAAYPTDGTDSGELFKNASSALRCAKGR 407 Query: 688 GGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N +++ ++ + +R+ ++ L A + E + Y P I + VG EAL++W Sbjct: 408 GRNMHQAYAIATANRDPERLFLESALRGAQKYGEFSVHYQPRIDVDTGAPVGAEALLRWH 467 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS + F+ IAEE +I++I ++L WR+ P I +N++++ Sbjct: 468 HPDKGMISPARFIPIAEETGLIESIGEWVLRAACEQNRLWRESDLKPG-RIGVNLSARQF 526 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 +L + L+ ++ P ++L +ES++M + + + + L+ G+S+ LDDFGT Sbjct: 527 RHADLALRVVQLLKESGLDPEHLELEITESMLMEDVDAAITTMTCLKDYGVSIALDDFGT 586 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL P DT+K + S + AI +II MA+ + +IA+ + Sbjct: 587 GYSCLSYLKRFPIDTLKIDQSFVREITSDPASAAIADAIIAMAQRLGLDVIAEGVETPEQ 646 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L GC +Q A P+ + KLL+ Sbjct: 647 CRLLRESGCRLMQGYLFARPVPAEDLTKLLR 677 Score = 54.2 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 18/148 (12%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRL 479 + +G + + G + W R R + + R Sbjct: 24 VDGVLTYANKAALDAIGAQAEEVLGRPFDATPWW-RFSDQSRQRLRESIRAAGRGLASRF 82 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 + + + + M + P+ + NG++ + DITE++++ + LT Sbjct: 83 --DVPILDLNGRVRTMDFTLHPVYDDNGNVTYLVPSGRDITERRQAERELR-------LT 133 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPT 567 Q +D + D +R Sbjct: 134 -----QFAVDHARGAMFQIDADGRVRYA 156 >gi|89899703|ref|YP_522174.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89344440|gb|ABD68643.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 701 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 138/627 (22%), Positives = 265/627 (42%), Gaps = 22/627 (3%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 + A + L + L TV++ L Sbjct: 83 FLLPVVFITAFAADEVLARAKLTEPFGYILKPFSERELRTVLEMALYKHQADSQARDAAR 142 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHIND 460 + G D V + + ++T+ G A + G L +H Sbjct: 143 HTQAILDGMVDGVITLNAQGLITSINQAVSTLFGYAPEELLGHNVAMLMPSPHRSLHGGY 202 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + + + D + + + + NG ++IG+ +DIT Sbjct: 203 LRRHQHTGAGCAMGQGREVDG----QRRDGSVFPISVSVSELM-HNGQ-TQFIGLVHDIT 256 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++++S E I AF D LTG+PNR+ +DRL L S ++++D+D +K+IN Sbjct: 257 QRRRSEENIYRLAFYDKLTGLPNRRLLMDRLKQALITSTRTGQ-HGALILLDLDHFKQIN 315 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFAI 635 + G+ GD++L + +R+ ++ D ++R G+ F ++L + ++ ++ A Sbjct: 316 ETFGLDAGDELLQQVGQRLPTCVRDDDTVSRFGGDEFMVMLEALSSQPQEAAIQAEAIAQ 375 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++A P L T SIG + ++++ ++LK ++AMY AK G N V F Sbjct: 376 KILLALAQPYRLRGHTHGTTPSIGVVMFRQAQVSLDDLLKMTDVAMYQAKAAGRNTVRFF 435 Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + ++E+L + E L Y + G EAL++W HP G + Sbjct: 436 DPALQALALARTALEENLRRGLALQEFVLHYQIQVDHQ-GLPTGAEALLRWQHPVRGMVP 494 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 ++F+ +AEE I + ++LE R +++W Q + +N+++ + Sbjct: 495 PAQFIPLAEETGFILPLGQWVLESACRQLVAWSHQRATGSWTLAVNVSALQFAQPDFVAH 554 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + + + T +P+ +KL +ES+++G+ + + L+ G+S LDDFGT S LSYL Sbjct: 555 VTSALQATSANPTLLKLELTESMLVGDVQDVITKMNALKAQGVSFALDDFGTGYSSLSYL 614 Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S + I ++I+ + N+ +IA+ + L +G Sbjct: 615 KRLPLDQLKIDQSFVRDLLINPNDAVIAQTIVALGHNLGLQVIAEGVETVGQHDYLASIG 674 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFP 958 CD Q + P+ + LLK+ P Sbjct: 675 CDAFQGYYFGRPVPAAELACLLKQIRP 701 >gi|297155724|gb|ADI05436.1| hypothetical protein SBI_02315 [Streptomyces bingchenggensis BCW-1] Length = 695 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 148/565 (26%), Positives = 260/565 (46%), Gaps = 16/565 (2%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + + G+ V + + + +A + G P RN ++H + Sbjct: 129 LHASEAKFQAVFEGAVVGVGICGLDGEILVVNDAMARMFG--GMDFFRPGRNVNEFVHPD 186 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D I V RR + E D W + + + +S G + +A DI Sbjct: 187 DAPGVHEIYRELVTGRRDHFRIEKPHYRDDGSVLWTNLTVTLLRDSTGAPQYQLTLAEDI 246 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TEQ+ E + A D LTG+PNR FL+RL +L + D R V +D+D +K + Sbjct: 247 TEQRLLRERLRYEATHDELTGLPNRTLFLERLDKVL--AGEADAERFGVCYLDLDGFKSV 304 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 ND LG GD +L ++ R+ + ++LAR+ G+ F ++ + + A M Sbjct: 305 NDSLGHIAGDRLLKAVAERLRDCAAAPGELLARVGGDEFLALVTGPSAQQDATELARRML 364 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE--SFR 696 ++A P+ + RE+ V ASIG + +++ +E+L++A++ MY AK GGN E Sbjct: 365 DALAEPVRVDGRELLVRASIGVVDGPAGELSRAEVLRSADITMYRAKAAGGNRFELADAD 424 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ R + L A+E E ++ Y P++RL D + G EAL++W HPK G + + Sbjct: 425 SNAQVIARHSLTNGLPAALERGEFFIEYQPLVRLADGTVRGAEALVRWLHPKHGVLGPDQ 484 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQ----ANMPPIFILINIASKDLLDNELCE 812 F+ +AE+ +I + ++LE+ AR WRD + + +N++ L L Sbjct: 485 FIPLAEDTGLIVPLGRWVLEQAARQARDWRDADAGAGVGDQLRVNVNLSPCQLSHPSLVS 544 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 A++ PS + L +E+ ++ E + L +L +G+ + LDDFGT S LSY Sbjct: 545 DTVAVLEDAGLCPSALCLEVTENDLIDVDEDALRPLRQLADLGVDIALDDFGTGYSNLSY 604 Query: 873 LGYIPFDTVKFNGSLMTG-----STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L +P T+K + S G + I+ I+ +A ++ + + + + + L Sbjct: 605 LRRLPVSTLKLDRSFTRGMQRAPIDPVDVKIVEGIVSLAHTLDLAVTVEGVETAVQAECL 664 Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952 +GCD Q + A P + L Sbjct: 665 RGLGCDTAQGWYYARPGPPERLHTL 689 >gi|239827355|ref|YP_002949979.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. WCH70] gi|239807648|gb|ACS24713.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. WCH70] Length = 676 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 144/572 (25%), Positives = 266/572 (46%), Gaps = 16/572 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + V + + + L S D + + R+ + + + G A Sbjct: 112 RDVTKEKKLERALEESKQHFQLIAEHSTDYILIFSNKRELLYIPSSLEKV-GTAIHQY-- 168 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + L ++H +D N D ++ EFR R + ++ WM + + + N Sbjct: 169 SYEDILQFVHPDDLPNIVRKFDELYRTYDTQI-AEFRKRDNEGKWIWMEAQGKAIVNEQN 227 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ I +I E+KK E + A+ D+LTGI NR F + +++ Sbjct: 228 ELDYVIVTVKNIGERKKYEEKLRQLAYFDSLTGIANRSYFERYIKQLIE-----SQTDFA 282 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 + +D DK+K IND GD L RR+ +L+ D AR+ G+ F ++L + Sbjct: 283 LCYLDFDKFKWINDHFSHQAGDYFLQEAVRRVQSVLRTEDFFARIGGDEFVLLLPNIT-K 341 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ A + ++ P ++ I T S+G A + +++K A+ A+Y+ K R Sbjct: 342 EEVTKLADELVQTFHKPFYYEKQLIQSTLSMGIAFFPKDSDRIEQVMKYADQALYNVKKR 401 Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 G N E +R + R I++DL A+ + YL Y P I+L +G+E L++W HP Sbjct: 402 GKNGYEFYRPTQNRKAI--IEQDLPFAILREQFYLCYQPKIKLDSGATMGVETLLRWRHP 459 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G I +F+ +AE+ I I L++LE R + W+ Q + + +N++ L Sbjct: 460 SLGEIPPLDFIPLAEQSGFIFEITLWVLEHSCRQVKEWQTQFPG--LKLAVNLSPFLLNR 517 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 EL + + ++ T ++P + L +ES +M N E + +L +L+ IG+ + +DDFGT Sbjct: 518 TELVQHIVHILRDTHFAPEHLILEVTESGLMENFETGKHILTQLKNIGVQVAIDDFGTGF 577 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+Y+ +P +K + S + G E I+ +II +AK+++ ++A+ + + Sbjct: 578 SSLAYIRNLPVSLLKIDRSFIQGIAENSKDATIVDTIIHLAKSLDIQVLAEGVETYHQVA 637 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L +M CD+ Q + + L + K L+E Sbjct: 638 LLQQMDCDFAQGFYFSKSLEAEKLQKWLEEYM 669 Score = 48.4 bits (114), Expect = 0.006, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 3/120 (2%) Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 + V + + T P +LG +GS ++ L V Sbjct: 14 EAVAILNTEGYVIYTNPAFQALLG-TNGSGAVRHAHFETI--AEMETIVVEPLLQSVRNG 70 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 + E+ ++ AD++ + P+ N G+I + + D+T++KK + + Sbjct: 71 KSIHNVEWTIKKADDRIVPVSAVFSPIVNEQGEIDSILCVCRDVTKEKKLERALEESKQH 130 >gi|304311724|ref|YP_003811322.1| hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1] gi|301797457|emb|CBL45677.1| Hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1] Length = 670 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 133/559 (23%), Positives = 263/559 (47%), Gaps = 17/559 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + +W D + T +A +LG + M G + ++ R F T Sbjct: 110 YQQLFELTQEGIWLVDENGNTTKTNSAMAAMLGYSVAEMLGK--HLTHFMDEQGRAEFAT 167 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + +L E+ + + +I+ P+ +G I DIT+++++ Sbjct: 168 MFERRKSGNSEQL--EYDLIKKTGERIHTMIQTAPIYGDHGQFQGAIAGIIDITQRRQAE 225 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + A D+LT +PNR+ + L + + + V+ ID+D +K IND LG Sbjct: 226 QQLAWQANYDSLTSLPNRRFASELLEKEIARAKRRQHC-GAVLFIDLDLFKNINDSLGHP 284 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSI 641 VGD +L+ + R+ + L+ PDI+ARL G+ F +IL ++ + A ++ +I Sbjct: 285 VGDQLLIQVGDRLQKHLRTPDIVARLGGDEFIVILPELHSEIAQAKISAQHVANKLQAAI 344 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 + + + +T SIG A + + T ++++ A+ AMY +K G N V F + Sbjct: 345 GQEFQVNQHPLNMTCSIGIAIFPIEQETIHDIIRQADTAMYRSKRDGRNLVRFFTQELQQ 404 Query: 702 SDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 +++ L A+ +++ L + P + + ++VG EAL++W HP+ G+I F+ Sbjct: 405 EAERVMELQLLLPKAIADNQFQLFFQPQLNHQN-QLVGAEALLRWFHPEKGSILPFHFIR 463 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALI 818 AEE +I A+ ++L+ +++ W D I INI+ + + + + + ++ Sbjct: 464 AAEESGLILALGNWVLDAACKNLRCWLDAGLPSGFERIAINISPRQFIADSFVDHLCKVL 523 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +P+ I+L +E +++ N + + + LR+ G +++DDFGT S LSYL +P Sbjct: 524 DDAAITPNLIELEITEGMLLNNIDSNIAKMQILRRKGFHISIDDFGTGYSCLSYLKTLPI 583 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + S AI+++II MA +E ++A+ + ++ L GC Q Sbjct: 584 SKLKIDQSFTHDLSSDHNDRAIVQTIILMATTLELDVLAEGVETVEQLEFLKSHGCLKYQ 643 Query: 937 DSHVASPLGFNSI-LKLLK 954 + P+ + K ++ Sbjct: 644 GFYFGKPIEAEAFTEKWMR 662 >gi|221309204|ref|ZP_03591051.1| hypothetical protein Bsubs1_07436 [Bacillus subtilis subsp. subtilis str. 168] gi|221313532|ref|ZP_03595337.1| hypothetical protein BsubsN3_07377 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318454|ref|ZP_03599748.1| hypothetical protein BsubsJ_07311 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322727|ref|ZP_03604021.1| hypothetical protein BsubsS_07417 [Bacillus subtilis subsp. subtilis str. SMY] gi|41019471|sp|O34311|YKOW_BACSU RecName: Full=Signaling protein ykoW Length = 800 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 152/780 (19%), Positives = 300/780 (38%), Gaps = 57/780 (7%) Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272 +S + + ++ + G ++ V++ + +S F+ +Y Sbjct: 39 LKSKIWLIGGSLIMGFGIWSMHFVGMMA--VHMEMPMEYEFMPLMAAIGASVSGSFVSLY 96 Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY---- 328 +R + + A + M + + + I + I Sbjct: 97 F-VSRHILTYYRLLTGSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFV 155 Query: 329 -------HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII---------QPALV 372 +K + ++ I + M T L Sbjct: 156 SLKIFFDLAVKKHSEHLIFYKGVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQT 215 Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER--------QSLAVLGSGDIVWDWDIV 424 + V LI F + +L + + + ER QSL V D ++ + Sbjct: 216 FHWSIFVTLIIFCIQTLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNI-DAIFILSLE 274 Query: 425 RDRVTTTPDIATI---LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D +++ + G + + + + ++ + Sbjct: 275 GDIISSNHAGEEMISKFGFSMHDWRNYTSL-----------KVKRLFEQVKKDKQA-MNS 322 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 + + Q + I + P+ N ++ I D+T+Q K+ + I A D+LT + Sbjct: 323 DSDLITEKGQ-FHLNITLIPV-EVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDL 380 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR+ + LT +L+ + V +D++++K IND LG VGD +L +R+ Sbjct: 381 PNRRHAISHLTKVLNR-EHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSS 439 Query: 602 LLKFPDILARLSGNRFGIILIS-ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 ++ +ARL G+ F IIL + + A + + P + + + + SIG Sbjct: 440 VVPDNGFIARLGGDEFIIILTDANTGTGEADVLARKIIQKFKKPFKIQDHTLVTSVSIGI 499 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENS 718 A E++K A++AMY AK R + + S + V + ++ L A+EN Sbjct: 500 AISPKDGTDGLELMKKADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIEND 559 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 L Y P + +++ G EALI+ P EF+ +AEE +I I ++++ Sbjct: 560 RFVLHYQPQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEA 619 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 + W D+ + + INI+++ +L ++ ++K P +++ +ES+ M Sbjct: 620 CKQARIWHDKGYD--LSVAINISARQFQSKDLIPLIKDTLNKYQLPPQLLEVEVTESMTM 677 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896 N S+ +L L ++GI +++DDFGT S LSYL P +K + S + K Sbjct: 678 DNLNHSKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSE 737 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +II M + +IA+ + + L GCD++Q + P+ + + E+ Sbjct: 738 QITGAIIAMGHQLSLQVIAEGVENAAQKQLLFEKGCDHLQGFFFSRPIPPEQFEQFIIEQ 797 >gi|256394295|ref|YP_003115859.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Catenulispora acidiphila DSM 44928] gi|256360521|gb|ACU74018.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Catenulispora acidiphila DSM 44928] Length = 750 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 140/597 (23%), Positives = 268/597 (44%), Gaps = 24/597 (4%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 ++ G I I ++ E ++L S D + +D Sbjct: 162 GMIIGTFGISRDITARTTTEAQLRAKTAELDRIGTELRALI-ESSPDPMCRFDRQLRYTY 220 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-----YRRGRLQYEFR 484 P + G+ + G + ++ F + + ++++ Sbjct: 221 ANPAALRVAGVPESELVGRTNREAGH-----QEKFVREWEQTLRRVLRTGVGDEVEHDLV 275 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 + + R+ P ++ G ++ + +++D+T++K+ + + A +D LT + NR Sbjct: 276 LA---GTRRFFHTRLVPERDATGTVVSVLTVSHDLTDRKRIEDALAEQAVRDPLTHLANR 332 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 +DR+ L R V+ +D+D++K +ND LG A GD +LV+ R+ ++ Sbjct: 333 ALLVDRIDQALAKMRVQGG-RLAVLFLDLDRFKVVNDSLGHAAGDALLVATAARLRSAVR 391 Query: 605 FP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 D++AR G+ F I+ AD A + ++++ P + I ++ASIG A Sbjct: 392 QGSDLVARFGGDEFVILCEHVQGRKDAADVARRVTRALSAPFERDGQPIHISASIGIAVT 451 Query: 664 TSSKITSSEMLKNAELAMYHAKHR----GGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719 + T+ E+L++A+ AM+ K R G V R+ ++ +L A+E E Sbjct: 452 SDPMTTADELLRDADAAMFRVKARNHGSGSYIFFDDSVREEAVSRLWLEGELRRAIEEKE 511 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 LVY P+ L D +I+G+EALI+W HP+ G + S F+ IAE+ +I I ++L Sbjct: 512 FRLVYEPVYNLRDRQIIGMEALIRWQHPERGLLPPSTFIEIAEDCDLIVPIGRWVLHEAC 571 Query: 780 RDIISW--RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 + W R PP+ + +N++ + L D L + + + P ++ L +E+ V Sbjct: 572 GQLAVWNRRRDPGKPPLTMAVNLSPRQLNDEGLVAEVANALRGSGLEPEQLTLEVTETAV 631 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--R 895 P+ ++ +L ++ +G+ + LDDFGT S L +L IP + +K + + + G K Sbjct: 632 HEAPQFAQAVLSQVSDLGVQIALDDFGTGYSSLGHLRRIPANALKIDRAFVNGLEHKGGD 691 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 AI+ +++ MA + + + I E + L +GCD Q A P+ + L Sbjct: 692 TAIVTAVVTMAHALGMITVGEGIESEAQYEYLRALGCDQGQGYLFAEPVSAAAFETL 748 Score = 42.6 bits (99), Expect = 0.35, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 11/136 (8%) Query: 401 FSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIR-NWLPYI 456 + +R L + D ++ D + + A + G + M G ++ Sbjct: 55 QDELDRICLYNLLSACADTIFFKDRESRFIRVSRSQADLTGAESPTEMIGKTDFDYFTSA 114 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRA--ADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D R G ++ R D +P+ + +G I+ G Sbjct: 115 H-----AGNAFQDEQKIIRTGVPMFDIREANTLPDASERVFSCSKQPLRDFDGMIIGTFG 169 Query: 515 IANDITEQKKSLEGIL 530 I+ DIT + + + Sbjct: 170 ISRDITARTTTEAQLR 185 >gi|126665030|ref|ZP_01736013.1| hypothetical protein MELB17_18219 [Marinobacter sp. ELB17] gi|126630400|gb|EBA01015.1| hypothetical protein MELB17_18219 [Marinobacter sp. ELB17] Length = 1020 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 135/551 (24%), Positives = 261/551 (47%), Gaps = 13/551 (2%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTILD 469 + + + V + I G S + G IH +F L Sbjct: 475 LDQTSEAVVIAGADGRIQSVNRSFCEITGYTSKEAIGGSPSILKSGIH---TTHFYEALG 531 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + R + E R + + + + I + N +G I Y+ + +D+++ K++ + Sbjct: 532 LCLSE-NDRWKGEIWNRRKNGEVYPQLGSISIIRNDDGSIRNYVAVFSDVSKTKEAENNL 590 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 D LTG+PNRQ LD+++ ++ A + V+ +DID++K +ND G GD Sbjct: 591 FFAQNHDPLTGLPNRQYCLDKVSHVIAERAQTVH-EVAVVFLDIDRFKLLNDARGHHTGD 649 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 L ++ RR+ E +L R + F ++L N +IA + ++A P+ L Sbjct: 650 SFLRAVARRLAEACPKNGLLCRWGADEFVLVLEQVTNRDRIAVIVQTLFNALAKPLKLEG 709 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707 E+ +A +G + + + +++ AE A+Y AK RG + +E F + + + Sbjct: 710 HELIPSACVGISFYPEDAADAQGLMQAAETALYLAKERGPSSIELFTPLLAERLQRKFEV 769 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 +L AV+N EL L Y P + ++G+EAL++W HP G +S + F+ +AEEL +I Sbjct: 770 ASELRRAVQNDELTLNYQPQVDCKTAALLGVEALVRWQHPVNGLMSPATFIPLAEELGLI 829 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 + ++LE+ + WRDQ + P + +NIA + L+ + ++ L++K S Sbjct: 830 GLLGDWVLEKAMAQMARWRDQGHPIP-QVAVNIAPQQLV-PGFADHIRDLLAKHQLPASM 887 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +E + + +R LL LR +G+ L +DDFGT S L+++ ++P +K + Sbjct: 888 LELEITEGALERD-DRIIGLLQALRDMGVLLAIDDFGTGYSSLAHIKHLPVTCLKIDKVF 946 Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + + +AI+R+++ + ++ ++A+ + E L G D IQ + P+ Sbjct: 947 IDDLPDDAYNVAIIRTVLALGHSLGFRVLAEGVETEEQFLFLVEQGIDTIQGYYFGKPME 1006 Query: 946 FNSILKLLKER 956 ++ + + R Sbjct: 1007 AGALEQWIDNR 1017 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 52/158 (32%), Gaps = 3/158 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 IG T+ + Q + + S D+ + + T+LG Sbjct: 302 FIGRTISIKLPDLQRNEQPLLQPEQDFRRLAELSHDMTVRLQGDGTISYVSSIVKTLLGH 361 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 S+HG L ++ D F + + ++R D W+ + Sbjct: 362 TVESLHGTPFTLL--LNDEGVDTFERA-QRALEQAGVTQKITLKLRHTDRHSVWVETTMW 418 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + G + A+D+++++K I +++L Sbjct: 419 QPESGAGPGQGVVLTAHDVSQRQKYQLLIEELHQRNSL 456 >gi|158336002|ref|YP_001517176.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] gi|158306243|gb|ABW27860.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] Length = 901 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 235/437 (53%), Gaps = 4/437 (0%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 +++ E I AF D LT +PNR F DRL L + ++ VM +D+D++K IN Sbjct: 438 QRQDKEEIIRHQAFHDALTDLPNRVLFNDRLNIALASAQRNNG-SVAVMFMDLDRFKLIN 496 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG ++GD++L + R+ + L+ D +AR G+ F ++L + + A + + Sbjct: 497 DTLGHSIGDELLKEVALRLQDCLRDGDTVARWGGDEFTVLLPKIESVNDAINTAYRILDA 556 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + + E+ VT SIG A + + +L+NA++A+Y +K +G + + + Sbjct: 557 LKAAFVIRRHELFVTTSIGIAIYPEDGQEAEILLQNADVALYRSKEQGRGTCQLYNPTMN 616 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 ++ +++ L A++ E L Y P + + EIVGLEAL++W+HP+ G +S + F+ I Sbjct: 617 AKEQFILENSLRHALDRDEFILHYQPKVNICTGEIVGLEALVRWEHPEMGLVSPATFIPI 676 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I + ++L + + W + P+ + IN++++ L E + +I Sbjct: 677 AEETGLIVELGEWVLRTACQQAVLWHK-LGLAPLSVAINLSARQFYQPNLVEIVAQVIES 735 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T +P +++L +E++ + N E ++ +L L+ +G+ + +DDFGT S L+YL +PF+T Sbjct: 736 TGLNPQQLELEITETIAVKNMEFAKSILCNLQALGVHIAMDDFGTGYSSLNYLKQLPFNT 795 Query: 881 VKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + K + I+ ++I + K ++ ++A+ + E ++ L + C+ +Q Sbjct: 796 LKIDQSFIQDLKPASKDVEIINAVIALGKGLDLKVVAEGVDNEEQLELLRSLNCEIVQGY 855 Query: 939 HVASPLGFNSILKLLKE 955 + PL +S +L+ Sbjct: 856 LFSRPLSVDSTTDILQA 872 >gi|292491263|ref|YP_003526702.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291579858|gb|ADE14315.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 836 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 133/576 (23%), Positives = 257/576 (44%), Gaps = 16/576 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + E + ++ +D + +LG + Sbjct: 136 ERKQAEAALKQHQEFLQTILDRIPVMIAHFDPQGQLQWLNREAEHLLGWSLEEAKQIDIL 195 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 +D + + R+ + + + + R + S+G Sbjct: 196 AACSPDPDDYQKTLAFMQDA-----HPRWGDLRIHSRNGRV--LETRWANIRFSDGS--- 245 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 IGI D+TE K + D LTG+PNR DRL+ L + V+ + Sbjct: 246 RIGIGKDVTEYKAYEAQLERQTNYDTLTGLPNRNLLQDRLSHALARARRTRQW-VAVLGL 304 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 +D +K IND LG + GD +L ++ R+ L+ D ARL G+ F ++L + Sbjct: 305 GLDHFKLINDSLGHSAGDALLQAVASRLEACLREGDTAARLGGDEFVLVLEDLPEKTGVE 364 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + ++ P L +E ++ASIG + + + +LK A++A++ AK++G Sbjct: 365 PTIQRILNTLEAPFQLETQEFFISASIGVSFFPQDGRKARTLLKQADIALHRAKNQGRRG 424 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 ++ + +S R+ ++ L A++ EL L Y P + L + ++G+EAL++W HP Sbjct: 425 LQYYTPAMSMETIRRLSLENSLRSALDRGELKLHYQPQVSLENGRVMGVEALLRWQHPHR 484 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS ++F+ +AEE +I I ++L +W+ PP+ I +N++++ L + Sbjct: 485 GWISPAQFIPLAEENGLIVPIGEWVLNTACAQAKTWQ-VTGEPPLTIAVNLSARQFLQTK 543 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + ++ + + +KL +ES++M + + + L L++ GI L +DDFGT S Sbjct: 544 FIAQIDQILGQCGLAAKVLKLEITESLLMQDLKGAITTLHALKERGIQLAIDDFGTGYSS 603 Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P D +K + + + T AI ++II +A +++ ++A+ + E + L Sbjct: 604 LNYLKRFPLDQLKIDRAFIRDITREPDDAAIAQAIIALAHSLKLEVMAEGVEREAQVAFL 663 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 C IQ +V+ PL + ++E L++ + Sbjct: 664 QAKRCHAIQGYYVSRPLPPEQLAPWVRENKRLIQAS 699 Score = 96.9 bits (240), Expect = 2e-17, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 4/144 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--DRVTTTPDIATILGLASG 443 + + T +Q R + I++ + + +I +G Sbjct: 1 MQNYRRKTNKKAQASKVAQARLQHLLTVGPAIIYSRMLRAPYATTFISDNIQAQMGYRPK 60 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 WL +H DRD T L S + +L YE+R++ D + W+ + Sbjct: 61 DFIDTPDFWLNRVHPEDRDRVLTKLKSLFRHN--KLYYEYRLQHRDGHYRWIHNGQHLVR 118 Query: 504 NSNGDILRYIGIANDITEQKKSLE 527 ++G L +G DITE+K++ Sbjct: 119 AADGQPLEIVGYWIDITERKQAEA 142 >gi|254784824|ref|YP_003072252.1| GGDEF/EAL domain-containing protein [Teredinibacter turnerae T7901] gi|237687209|gb|ACR14473.1| GGDEF/EAL domain protein [Teredinibacter turnerae T7901] Length = 608 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 133/518 (25%), Positives = 236/518 (45%), Gaps = 30/518 (5%) Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI------RPMSNSNGDI-------- 509 R L ++E + D H +R R + G+ Sbjct: 74 ARARLQQLQSTSAMECEWELTAKHKDGSTHLYKMRRTRIACHRLLPGYAGEPEIQASSDD 133 Query: 510 -LRYIGIANDITE-------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + +G+ DITE + + F D LTG+ NR F DR+ + + Sbjct: 134 VIYTVGV--DITEDELAESVLRDHKSHLNFAIFHDPLTGLANRSLFYDRVNKSIARAKRT 191 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 +M++D+D++K +ND LG GD L ++ + + + L+ D +ARL G+ F ++L Sbjct: 192 -KSSLALMLLDLDRFKNVNDSLGHEAGDRYLKAVAQHLVDELRDTDTVARLGGDEFVVVL 250 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + S I A + + P+ + I+ TASIG + + + ++LK+A+ AM Sbjct: 251 ENVTCSESIEAIANKLLGCLQQPVVIQGHPISCTASIGISVFPHDGDSIDQLLKHADTAM 310 Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N + + +S + ++++ DL A+E +EL + Y P + L I GLE Sbjct: 311 YRAKAAGKNRAQFYVSAMSDSAVNYLLLENDLRRALEQNELRVFYQPQVDLNTGRITGLE 370 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W H G +S F+ +AEE +I+ + ++LE+ W + +N Sbjct: 371 ALVRWQHKDRGLMSPVHFIPLAEETGLIEPLGAWVLEQACARFQHWLAAGIDL-CKVAVN 429 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++++ + ++ KT ++L +ES M N + +L L +G+SL Sbjct: 430 LSTRQFRQEGFEHTVAQVLRKTGLPAQCLELEITESSAMENAANTINMLNCLSDMGLSLA 489 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P +K + S +T AI +SII +A N+ +IA+ Sbjct: 490 IDDFGTGYSSLAYLQRFPIQKLKIDRSFITNVDRDDQEAAIAKSIIDLAHNMSLEVIAEG 549 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + L GCD +Q + PL +++ L+ + Sbjct: 550 VERASQCQWLGERGCDQVQGYFYSKPLSEEALMNLVSD 587 >gi|296105527|ref|YP_003617227.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella pneumophila 2300/99 Alcoy] gi|295647428|gb|ADG23275.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella pneumophila 2300/99 Alcoy] Length = 976 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 139/576 (24%), Positives = 269/576 (46%), Gaps = 11/576 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ ++ + + + + A+ S +V D + G + Sbjct: 407 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 466 Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G R ++ + + E + + W+ I P+ N Sbjct: 467 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 522 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 N +I Y+ + D+T++K E + A DNLT +PNR +++L + S ++ Sbjct: 523 ENEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 581 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D++K+IND LG A+GD +L +L+ R +++ D +ARL G+ F +IL + Sbjct: 582 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 641 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A R+ + P + +E+ V+ SIG A + + +++NA+ AMY + Sbjct: 642 MQDKDAESIAKKCREICSQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTAMYQS 701 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG N+ F+ + ++ + IK +L A +ELY+ Y PII L + ++V EAL+ Sbjct: 702 KIRGKNNWTVFQKTMIDGANNHIRIKTELHQAFTRNELYICYQPIIDLKENKVVAAEALL 761 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G I+ + + +AEE MI + ++L+++ W I + +NI++ Sbjct: 762 RWQNTTLGQINPDQIISLAEETGMIIPLGYWILDKVCTQAKEWEFITG-SKIKVAVNIST 820 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + +Q ++ +T S + +ES + + + L +L IGI +LDD Sbjct: 821 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDIGIHFSLDD 880 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FG S L Y+ PF +K + + + +++++ SII MA+N++ ++IA+ I Sbjct: 881 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNQLSLINSIITMARNLKLSVIAEGIET 940 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ + M CD +Q + + PL + L L + Sbjct: 941 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFFLMNK 976 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I + Q + + + ER + D ++ ++ + L Sbjct: 283 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVADGIFIHNLQGAFLEVNEAACLSLN 342 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498 + + + + L+ ++G + E R D + +R Sbjct: 343 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTIFPVDVR 396 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + N+ G+ L + I DIT QK+S I Sbjct: 397 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 428 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 3/120 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + +GD V + P I + L + D F I Sbjct: 185 ILEKAGDSVEITNEEAVIQYVNPAFENITLYNAREAINKTVASLLRSPVEDAQLFEEINQ 244 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEG 528 + + + R R D + I P+ + G I ++I I DITEQ Sbjct: 245 TLKSGNT--WKGQIRSRKKDGSYWVAQTIIVPVMDDELGRITQHIAIKQDITEQVHRFNQ 302 >gi|320324868|gb|EFW80940.1| sensory box protein [Pseudomonas syringae pv. glycinea str. B076] Length = 729 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 150/577 (25%), Positives = 269/577 (46%), Gaps = 26/577 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 155 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 214 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + ++D R + + D +++ I + + Sbjct: 215 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 265 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + A DI + K + + A+ D LTG+PNR +DRL+ + L NLR ++ + Sbjct: 266 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 324 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627 D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + + Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 384 Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A +R+ +A P+ L + VT SIG + +++LK A++A+Y AK Sbjct: 385 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 444 Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F VS + S R+ ++ DL LA+ +E L + I D+ I G EAL++W Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 504 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802 +HP++G +S +F+ I EE MI + +L+ + Q + +NI+ Sbjct: 505 EHPEYGLLSPDQFVHILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 564 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + N+ E +Q + + S +KL +E +V+ N + + L + L+++G+S +DD Sbjct: 565 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 624 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 684 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L R+GC Q + PL LL +R Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 721 Score = 92.7 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + +R LA+ + WD DI +R+ + + + G+A+ R + Sbjct: 26 AERVLQQTRDRLELALELAHMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 85 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +R R + + + ++ LQ +R + + + R R N +G ++ G Sbjct: 86 LPAEERRRMRAVYAAALENQQDCLQVTYRFQLQNGTSRLLESRARIYRNEHGQAVKLSGT 145 Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+Q ++ E AF D++T Sbjct: 146 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 177 >gi|313200148|ref|YP_004038806.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312439464|gb|ADQ83570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 819 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 157/613 (25%), Positives = 287/613 (46%), Gaps = 17/613 (2%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQSLAV 411 L I +V+ +IG + + A I S+ V Sbjct: 213 MLVEPIMNPDGELHWAETYKSPVVIDGQVIGTVGFARDITAERRLEAEIARRENEYSMLV 272 Query: 412 LGSGDIVWDWDIVRDRVTTTP--DIATILGLASGSMHG--PIRNWL-PYIHINDRDNFRT 466 V +D RV + L + G P W I+I D + Sbjct: 273 QNLPLTVVRYDRECRRVFVNSYCAMRESLQQRISEVMGKTPAEYWSGNIINITAEDYQKR 332 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMI-IRIRPMSNSNGDILRYIGIANDITEQKKS 525 IL+ L+ + + + +RI P ++ G+++ + +A+D+TE + Sbjct: 333 ILEVMATGESDTLE----LITQYGEEQLVHLVRIVPERSATGEVIGAMTVASDVTENSRY 388 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + I A+ D LT +PNR F +L +++ + T+ + ++ ID+D +K IND LG Sbjct: 389 RKRIEQLAYHDILTELPNRLLFNQKLQMLIEQTPTNKHG-FCLLFIDLDNFKTINDTLGH 447 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +VGD +L+ ++RRI +LL D+LAR+ G+ F I L + L A A + ++ +P Sbjct: 448 SVGDKLLIEVSRRIRQLLGKDDMLARMGGDEFAISLPHCLSRLDAALLAARIIDALNVPF 507 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703 + + V+AS+G A + ++LK+A+LAMYHAK +G N+ + + ++ Sbjct: 508 EVSSIKFFVSASMGIAFYPEDSSHLDDLLKHADLAMYHAKRQGRNNFQFYNQELTVNAAE 567 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R++++ L A+ EL L Y PI+ L E+ G EAL++W+ G + +F+ IAEE Sbjct: 568 RLLMENLLRQALAKGELQLYYQPIMELATGEMYGAEALLRWNSFDLGMVGPDKFIPIAEE 627 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 MI I ++L R ++W P + IN++S+ + + + + +T Sbjct: 628 RGMIVEIGGWVLREGCRTAVAWNA-LRSQPYVLAINLSSRQFMQQDFLTTITDCLQETGC 686 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P +K +ES+++ + + R L L IGI++ +DDFGT S L YL P VK Sbjct: 687 RPQWLKFEITESLLLHDSDHIRQTLEALHSIGIAIAIDDFGTGYSALGYLNKFPVSQVKI 746 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S ++ + ++++II MA ++ ++A+ + + L+++GC Y+Q + Sbjct: 747 DRSFVSDIATNTESALLVKAIIAMADSLGKDLVAEGVETAEQAELLSQLGCQYVQGYYYG 806 Query: 942 SPLGFNSILKLLK 954 P+ + + L+ Sbjct: 807 RPVPLETFNQSLR 819 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 3/179 (1%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + + D+I + + +I + Q + I + Q Sbjct: 85 GGCVAHFTVGSQEIFDLISFSPLSDEHGQMIGVLAIGRQTDQRDAAETLEIRRREQYQRA 144 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + +VW D + T A +L +A + Y + + Sbjct: 145 VLNTFPFMVWLKDKQSRFLATNKAFAEVLQIAHDE-DMRGKTDFDYFPHAMAEGYVADDQ 203 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + ++ E + D + HW P+ +G ++ +G A DIT +++ Sbjct: 204 EVLASGAAKMLVE-PIMNPDGELHWAETYKSPVV-IDGQVIGTVGFARDITAERRLEAE 260 >gi|330875724|gb|EGH09873.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 730 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 145/583 (24%), Positives = 267/583 (45%), Gaps = 26/583 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 155 QAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAREVLGRTAHEVGI 214 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + R + + + E R + + + + ++ +N Sbjct: 215 WTDTV-------QREYMIDELRQKGRMHHREMNGRDKNGAPLVLDVSVEFITLNN--TAC 265 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + A DI + K + I + D LTG+PNR +DRL+ + L NLR ++ + Sbjct: 266 LLMNARDIGQLKSAQAQIQHLTYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 324 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627 D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + S Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARLGGDEFVVLICGLDGSLEQV 384 Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A +R +A P+ L + VT S+G +T +++LK A++A+Y AK Sbjct: 385 THQVRVLADNLRVLLAEPMFLDGHRLQVTPSVGIVLIPDDGLTPADLLKRADIALYRAKD 444 Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F VS + S R+ ++ DL LA+ +E +L + + +I G EAL++W Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALARNEFHLHFQAQVDCRTNQITGAEALLRW 504 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802 HP++G + +F+ I EE MI + +L+ + Q + +N++ Sbjct: 505 QHPEYGLLPPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNVSP 564 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ E ++ + + + +KL +E +V+ N + + L + LR +G+ +DD Sbjct: 565 RQFRQSDFVERVEHSLKQHHLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAMDD 624 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGVET 684 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + L R+GC Q + PL LL+ R L + Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPEFETLLQLRRQLQTSA 727 Score = 96.6 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 8/151 (5%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + R LA+ + WD DI R R+ + + + G+ + R + + Sbjct: 27 ERILEETRARLELALDLAQMGTWDLDITRSRLQASARASFLHGMDAQPFDDDSRLFFERL 86 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +RD R + + R+ LQ +R + D + R R + G+ ++ G Sbjct: 87 PAEERDRVRAAYTAALESRQDCLQMTYRFQMKDGTSRLIESRARIYRDETGNPVKLSGTL 146 Query: 517 NDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+Q ++ E AF D++T Sbjct: 147 LDITQQCVQAALEASEEKFAKAFHSSPDSIT 177 >gi|148358169|ref|YP_001249376.1| GGDEF/EAL domain-containing sensory box protein [Legionella pneumophila str. Corby] gi|148279942|gb|ABQ54030.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella pneumophila str. Corby] Length = 972 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 139/576 (24%), Positives = 269/576 (46%), Gaps = 11/576 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ ++ + + + + A+ S +V D + G + Sbjct: 403 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 462 Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G R ++ + + E + + W+ I P+ N Sbjct: 463 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 518 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 N +I Y+ + D+T++K E + A DNLT +PNR +++L + S ++ Sbjct: 519 ENEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 577 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D++K+IND LG A+GD +L +L+ R +++ D +ARL G+ F +IL + Sbjct: 578 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 637 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A R+ + P + +E+ V+ SIG A + + +++NA+ AMY + Sbjct: 638 MQDKDAESIAKKCREICSQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTAMYQS 697 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG N+ F+ + ++ + IK +L A +ELY+ Y PII L + ++V EAL+ Sbjct: 698 KIRGKNNWTVFQKTMIDGANNHIRIKTELHQAFTRNELYICYQPIIDLKENKVVAAEALL 757 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G I+ + + +AEE MI + ++L+++ W I + +NI++ Sbjct: 758 RWQNTTLGQINPDQIISLAEETGMIIPLGYWILDKVCTQAKEWEFITG-SKIKVAVNIST 816 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + +Q ++ +T S + +ES + + + L +L IGI +LDD Sbjct: 817 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDIGIHFSLDD 876 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FG S L Y+ PF +K + + + +++++ SII MA+N++ ++IA+ I Sbjct: 877 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNQLSLINSIITMARNLKLSVIAEGIET 936 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ + M CD +Q + + PL + L L + Sbjct: 937 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFFLMNK 972 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I + Q + + + ER + D ++ ++ + L Sbjct: 279 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVADGIFIHNLQGAFLEVNEAACLSLN 338 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498 + + + + L+ ++G + E R D + +R Sbjct: 339 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTIFPVDVR 392 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + N+ G+ L + I DIT QK+S I Sbjct: 393 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 424 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 3/120 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + +GD V + P I + L + D F I Sbjct: 181 ILEKAGDSVEITNEEAVIQYVNPAFENITLYNAREAINKTVASLLRSPVEDAQLFEEINQ 240 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEG 528 + + + R R D + I P+ + G I ++I I DITEQ Sbjct: 241 TLKSGNT--WKGQIRSRKKDGSYWVAQTIIVPVMDDELGRITQHIAIKQDITEQVHRFNQ 298 >gi|322833108|ref|YP_004213135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rahnella sp. Y9602] gi|321168309|gb|ADW74008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rahnella sp. Y9602] Length = 694 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 144/605 (23%), Positives = 267/605 (44%), Gaps = 30/605 (4%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVI-QHVLATGYFSQGIFSDGERQS------------- 408 + ++ L +IGF I + V + + E Sbjct: 91 GSRFWAHIIIEALREAGEIIGFAKITRDVTERRETEKALLQAKELAESNSEQLSSLSHFL 150 Query: 409 --LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + ++ + + R+ + +LG+ M G I F Sbjct: 151 NTVIANIPSSVIVENAVSREILLVNRQAERLLGIPRDKMLGKRPQDCMGI---GLSTFIN 207 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 G + E ++ A + + + + IA+D+T+Q+ + Sbjct: 208 KQSDECLRAEGLHRSEQQLLTAIGD-RTLQTTSSVIRGHDPQTSYVMMIADDVTDQQAAH 266 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 I A DNLT +PNR F RL+ L + + + +D+D +K +ND LG Sbjct: 267 ARIHHMAHHDNLTSLPNRILFSQRLSEALQR-DSYTHSHTATLCLDLDNFKNVNDALGHQ 325 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD++L ++ +R+ L+ D LAR+ G+ F ++L + + + +S+ P+ Sbjct: 326 VGDELLRAIAKRLRMTLRDDDTLARIGGDEFAVVLPGLKDISAAHQISKRLIESVRPPVI 385 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 + ++V SIG A S++ T ++L+ A++A+Y AK G N E FR+ + R Sbjct: 386 IDGHSLSVGLSIGIALAGSTENTPDQLLRCADMALYEAKRNGRNRYEDFRLEMDAAARKR 445 Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ DL A+ ++L L Y PI + ++G EAL++W HP+ G I +F+ IAEE Sbjct: 446 RVVEMDLRDAITCNQLRLYYQPITDARHDAVMGYEALMRWHHPENGLIMPVDFIPIAEET 505 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I ++ F L R+ SW+ + +N++ ++ L +++ + + Sbjct: 506 GLIHSLGSFALHEACREAASWKGSQ-----TVAVNLSPIQFKNSGLLSVVESALEASGLD 560 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 PSR+++ +ESV++ N + L +L+ +G+ + LDDFGT S LSYL PFD +K + Sbjct: 561 PSRLEVEITESVLLDNTLGNISTLRKLKSLGVRIALDDFGTGYSSLSYLRSFPFDKIKID 620 Query: 885 GSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + + R AI+R+I M+++++ A+ + + + L GC Q Sbjct: 621 RSFINDMHDSREALAIIRAITGMSRSLDIQTTAEGVETDEQFRRLKEEGCTLFQGYFFGR 680 Query: 943 PLGFN 947 P Sbjct: 681 PQPSE 685 Score = 55.7 bits (133), Expect = 4e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 4/117 (3%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 ++ G + G ++ + DR N Sbjct: 20 AIYMLTPDGHIANWNAGAQRAKGYTPEEVVGK--HFSCFYTEEDRQNGWPQRGLETARST 77 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 GR + E + D W I I + G+I+ + I D+TE++++ E L A Sbjct: 78 GRYESEGWRQRKDGSRFWAHIIIEALR-EAGEIIGFAKITRDVTERRET-EKALLQA 132 >gi|217978731|ref|YP_002362878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylocella silvestris BL2] gi|217504107|gb|ACK51516.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylocella silvestris BL2] Length = 608 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 129/561 (22%), Positives = 235/561 (41%), Gaps = 17/561 (3%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + E L G D + A + G ++ + Sbjct: 46 LKAQDESFRLLFEGGPIPTALCDPESARFLVVNDAAAALWGFSASELLAMTA--FDITPE 103 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + R R +D +++ R + +G + D Sbjct: 104 EDWEEVRAFATRDPESAANPRVG--RHLRSDRSVIHVVVHSRAIVFRDGPA--ILVTIID 159 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +T+++++ + D LT +PNR F RL L + V+ +D+D++K Sbjct: 160 VTDKQRAELRLAHLEHHDALTDLPNRALFRIRLDEALSRLDSGQG-EIAVLYLDLDQFKA 218 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L ++ R+ L+ D LAR G+ F + + A + Sbjct: 219 INDTLGHTVGDALLRAVADRLRACLRPGDTLARFGGDEFAFLCGRLAGPDEAGKLASLIV 278 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + + + ASIG A S +LK+A++A+Y AK G F Sbjct: 279 DEVGGPYVIQGHCVEIGASIGVAMAPGDGRDSDLLLKHADMALYRAKEEGRRAFRFFEPE 338 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R ++ DL A+ SE L Y P++ L I G EAL++W HP G I + Sbjct: 339 MDARAQARRQLEADLRQALIASEFELHYQPLVALQTGAITGFEALLRWRHPIRGMIPPAA 398 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I + + L + + W + + + +N++S +L + Sbjct: 399 FIGLAEETGLIVPLGEWALRQACAEAAKWPNH-----LKVAVNLSSVQFKRGDLIHSVLT 453 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ + SR++L +ES+++ E + L R+R +G+S+++DDFG S LSYL Sbjct: 454 ALANSGLPASRLELEITESILLAESEANLATLHRMRSLGVSVSMDDFGIGYSSLSYLRAF 513 Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PFD +K + S ++ AI+R++ + ++ + A+ + + L GC Sbjct: 514 PFDKIKIDRSFVSELGHGCGSRAIVRAVAGLGSSLGVSTTAEGVETSEQLAWLRAEGCTE 573 Query: 935 IQDSHVASPLGFNSILKLLKE 955 +Q + + P+ + I +LK Sbjct: 574 MQGFYFSPPVPASKIAPMLKA 594 >gi|312961254|ref|ZP_07775759.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens WH6] gi|311284912|gb|EFQ63488.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens WH6] Length = 862 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 143/596 (23%), Positives = 276/596 (46%), Gaps = 24/596 (4%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQ----GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + +++ + A+ Q + + R V S D VW+ D Sbjct: 279 MTWVILRRSTAAALALDASHDSLQSSQNALATSEARFRDVVEASSDWVWEIDADWRFTYL 338 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 + ++ GLA + G N + D RR L + A Sbjct: 339 SERFESVTGLARNTWIGAAMN--DLLETED---GLLSQWLCTPGRRPDLSVQCLYLDAQG 393 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 Q + R M + G A D+TE+ ++ I + D LTG+PNR Sbjct: 394 QERTTRLSARQMPCG-----GFRGTATDVTEEVEARRRIEFLSLHDALTGLPNRTRLQAF 448 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L + L + ++ +D+D++K +ND+LG A GD VL ++ R+ ++ D++A Sbjct: 449 LDSKLK-ALPPPERPLVMLSLDLDRFKPVNDLLGHAAGDRVLNEVSSRLSACVRHGDLVA 507 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 R+ G+ F +IL + + + SI I + E+++ ++ASIG + Sbjct: 508 RVGGDEFVLILTDAGTQDDVENLCRRLIGSIEQAIRIDEQDVFISASIGITLAPNDASEV 567 Query: 671 SEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728 +E+L+ A++A+Y AK G N + +++ +R ++ DL A+++ EL L + P Sbjct: 568 TELLRYADIALYEAKAAGRNTWRFYSGEMNARIIERRRLESDLRYAIKHGELRLHFQPRY 627 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 R+ D ++VG EAL++W HP G I+ F+ IAEE +I +++ ++L W Sbjct: 628 RIADGQMVGAEALVRWQHPVRGLIAPDTFIPIAEESGLILSLSDWVLATACACAAQWP-- 685 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 +F+ +N++ + L + ++ + + P+R+++ +ESV++ + + ++ Sbjct: 686 ---GNLFVSVNLSPIEFKRGHLVQRVRHALDASGIDPARVEVEMTESVMLEDAVGALEVM 742 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 L+++GI + +DDFGT S LSYL PFD +K + S +T ++ AI+++I+ + Sbjct: 743 HTLKQLGIRIAMDDFGTGYSSLSYLRAFPFDGLKIDRSFLTRLEDSDDDKAIIQAIVGLG 802 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 + + T+ A+ I + L + CD Q ++ P+ ++ LL + K+ Sbjct: 803 RALALTVTAEGIETAEHLAMLKAVACDEGQGYFLSRPMDVDAFNGLLAQDTQQTKS 858 >gi|321315095|ref|YP_004207382.1| putative sensor protein [Bacillus subtilis BSn5] gi|320021369|gb|ADV96355.1| putative sensor protein [Bacillus subtilis BSn5] Length = 800 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 152/780 (19%), Positives = 302/780 (38%), Gaps = 57/780 (7%) Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272 +S + + ++ + G ++ V++ + +S F+ +Y Sbjct: 39 LKSKIWLIGGSLIMGFGIWSMHFVGMMA--VHMEMPMEYEFMPLLAAIGASVSGSFVSLY 96 Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY---- 328 +R + + A + M + + + I + I Sbjct: 97 F-VSRHILTYYRLLTGSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFV 155 Query: 329 -------HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII---------QPALV 372 +K + ++ I + M T L Sbjct: 156 SLKIFFDLAVKKHSEHLIFYKVVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQT 215 Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER--------QSLAVLGSGDIVWDWDIV 424 + V LI F + +L + + + ER QSL V D ++ + Sbjct: 216 FHWSIFVTLIIFCIQTLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNI-DAIFILSLE 274 Query: 425 RDRVTTTPDIATI---LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 + +++ + G + + + + ++ + Sbjct: 275 GNIISSNHAGEEMISKFGFSMHDWRNYTSL-----------KIKRLFEQVKKDKQA-MNS 322 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 + + Q + I + P+ N ++ I D+T+Q K+ + I A D+LT + Sbjct: 323 DGELITEKGQ-FHLNITLIPV-EVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDL 380 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR+ + LT +L+ T + V +D++++K IND LG VGD +L +R+ Sbjct: 381 PNRRHAISHLTKVLNREHTL-HYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSS 439 Query: 602 LLKFPDILARLSGNRFGIILIS-ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 ++ +ARL G+ F IIL + + A + + P + + + + SIG Sbjct: 440 VVPDNGFIARLGGDEFIIILTDANTGTGEADVLARKIIQIFKKPFKIQDHTLVTSVSIGI 499 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENS 718 A E++K A++AMY AK R + + S + V + ++ L A+EN Sbjct: 500 AISPKDGTDGLELMKKADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIEND 559 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 L Y P + +++ G EALI+ P EF+ +AEE +I I ++++ Sbjct: 560 RFVLHYQPQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEA 619 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 + W D+ + + INI+++ +L ++ ++K P +++ +ES+ M Sbjct: 620 CKQARIWHDKGYD--LSVAINISARQFQSEDLIPLIKDTLNKYQLPPQLLEVEVTESMTM 677 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896 N + S+ +L L ++GI +++DDFGT S LSYL P +K + S + K Sbjct: 678 DNLDHSKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSE 737 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +II M + +IA+ + + L GCD++Q + P+ + + E+ Sbjct: 738 QITGAIIAMGHQLSLQVIAEGVENAAQKQLLYEKGCDHLQGFFFSRPIPPEQFEQFIIEQ 797 >gi|295705929|ref|YP_003599004.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319] gi|294803588|gb|ADF40654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus megaterium DSM 319] Length = 571 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 141/559 (25%), Positives = 260/559 (46%), Gaps = 20/559 (3%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 LA+ S IV D I + G + H + F+ + Sbjct: 21 ELALNESS-IVAITDSRGFINHVNDKFCEISKYERHELLGQDHRIINSKHHSSL-FFKEL 78 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + E + +A D +W+ I P + G +Y+ I NDIT++K E Sbjct: 79 WSTIRSGK--VWHGEIKNKAKDGSSYWVDTTIVPFLDERGKPYQYVSIRNDITKRKAYEE 136 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A+ D LT +PNR L + ++ +D+D++K IND LG Sbjct: 137 KIKQMAYYDPLTNLPNRYW--LNKQLKKLLLNRESPELLAILFLDLDRFKSINDTLGHHH 194 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + R+ + + D ++R G+ F ++L S +I + + K +++P + Sbjct: 195 GDVLLRRVAERLRKCIPSSDFISRHGGDEFILVLHSLKTVEEIEEMTEQIVKEMSLPFYI 254 Query: 648 LEREITVTASIGFASWT----------SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++ + S+G + ++ + ++K A++AMY AK G N Sbjct: 255 DGDKVLTSTSVGISLFSKECQQYIIPKDADELIDRLIKQADIAMYVAKRNGRNTYAMSSS 314 Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + ++ +L A+E E LVY P+I L +++G EALI+W+ K+G + + Sbjct: 315 SSNERIIKTISMENELKYALERDEFQLVYQPLIDLKTSDVIGAEALIRWNSAKFGTVYPN 374 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ I EE+ +I + ++LE + + +W + ++ I +N++ L + M+ Sbjct: 375 EFLPILEEVGLIVPVGKWVLEEACKQMKAWTELNSLAS-KIGVNVSPIQLKSSRFVAEME 433 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T + P ++L +ESV + N + S+ +L RLR +G+ + +DDFGT S LSYL + Sbjct: 434 QILKRTGFEPRFLELEITESV-IQNSQESKKVLNRLRSLGVKVAMDDFGTCYSSLSYLKH 492 Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +P +T+K + S + E ++ +II M K + + A+ I E ++ +T GC Sbjct: 493 LPINTLKIDKSFIDDLDEVGKVLVETIIQMGKKLNFDLTAEGIENEEQLQFVTEQGCHIG 552 Query: 936 QDSHVASPLGFNSILKLLK 954 Q PL + +LLK Sbjct: 553 QGYLFDKPLSPEEMSRLLK 571 >gi|144898553|emb|CAM75417.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 823 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 150/606 (24%), Positives = 268/606 (44%), Gaps = 19/606 (3%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 R VG L IQ + A GE + + V Sbjct: 220 RDGGSFPIQVRVGALHFGDESYRVVSIQDLTARKVAEAESRLHGE----IFTHAQEGVLV 275 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRL 479 D ++ P + G + G +L H +D F + + +R G Sbjct: 276 TDTSGTILSANPAFCRMTGYELDELVGSPSGFLRSGRHPDD---FYGDMWEVL-HRDGHW 331 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 E R D + I + ++NG + Y+G+ DI+ K+ E + A D LT Sbjct: 332 SGEICNRRRDGDVIPQWVSISAVRDANGSVGNYVGVYMDISALKRHEEALRHMAHHDALT 391 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR DRL L + + V +D+D +K +ND LG VGD VL+ RR+ Sbjct: 392 GLPNRLLLADRLDVALAKARRTGKM-VAVAYVDLDGFKPVNDRLGHHVGDSVLIQAGRRL 450 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL--LEREITVTAS 657 + + D +ARL G+ + +++ ++ + + ++A P+ + I++TAS Sbjct: 451 LDSVAADDTVARLGGDEYVLVMQDMDDDQQCRQRLSQVLTAMAEPMRFLDEDSAISITAS 510 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAV 715 IG A + + +L++A+ AMY AK G N + F + + + LA+ Sbjct: 511 IGAALYPNDDSDPDTLLRHADRAMYQAKQEGRNRLAMFDPQLDLQGTLRRNTMKSVRLAL 570 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E+ + L Y P + + +VG EALI+W HP+ G + +EF+ + E+ + AI ++ Sbjct: 571 EDGQFVLFYQPKVNMRLGTVVGAEALIRWLHPERGLLPPAEFLPLIEDDSLDLAIGEWVT 630 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSE 834 + +W+ + I + +N+A+ LL N+ ++ ++++ P ++L E Sbjct: 631 RSSLAQMAAWKRAGAV--IPVSVNVAASHLLSNDFAGRLEEILAEFPDVPPRMLQLEVVE 688 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893 + + + R+R +L R +G+S+ LDDFGT S L+YL ++P DT+K + S + + Sbjct: 689 TAALEDIGRAREVLEACRALGVSVALDDFGTGYSSLTYLRHLPIDTLKIDRSFVLNLPDD 748 Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + I+R +I +A ++A+ I L +GC+ Q +A P+ L Sbjct: 749 MDDLTIVRGVIVLAAGFGRDVLAEGIEKTEHGDMLLELGCELGQGYRIAPPMPAGDFLGW 808 Query: 953 LKERFP 958 L P Sbjct: 809 LAAWQP 814 >gi|170725236|ref|YP_001759262.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908] gi|169810583|gb|ACA85167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella woodyi ATCC 51908] Length = 583 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 134/572 (23%), Positives = 262/572 (45%), Gaps = 16/572 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A + + + +R V D+V+ D+ + G + + G Sbjct: 17 AQNRLIEHLQASEKRYEDLVGHLRDVVFHLDLALKWTFLNQAWHGMSGYSIENSLGKY-- 74 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + D + + + + E ADN + R + + G Sbjct: 75 FAENLSSQDTQKCTAGFQALLTKQLTEMSEEITFNTADNDKRIFELSCRAVKDETGQFAG 134 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + GI DITE+ + I A+ D LTG+ NR+ ++ L L ++ I Sbjct: 135 FAGIITDITERIVAENKITFMAYHDALTGVANRRLLMEHLAQELTKPC---GHCSALLYI 191 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENN---- 626 D+D +K++ND G VGD +L ++ + E + D++AR+ G+ F + L + Sbjct: 192 DLDNFKQVNDHYGHTVGDLLLCEVSDVLSEYAQDEEDLVARMGGDEFILFLSNLGENSAL 251 Query: 627 -SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + K+ +R ++ P+ L + +I +T+SIG + + ++ S++ K A+ A+YH+K Sbjct: 252 VTQKLVQITEKIRVQLSEPVLLGKLKIQITSSIGVVTLDHATMSHSDIFKYADAALYHSK 311 Query: 686 HRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 + G N V + +S+R ++++L A+ N E L Y P + I+ E L++ Sbjct: 312 NTGKNQVRFYDEELEQSERRRHQLEDELSQAITNEEFLLYYQPQVDAEGTTILKAEVLLR 371 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP+ G ++ EF+ EE +I + ++LE R + W + + + IN+++ Sbjct: 372 WQHPRHGIVNPDEFIPHLEEYGLIIPVGKWILEESCRQLKVWHNAGKHE-LCLSINVSAN 430 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + E ++ + K S +I+L +E V + + + + RL+++GI + LDDF Sbjct: 431 QFKHPDFIEFIEICLIKHQISGEQIELELTEGVAIHDIPSTIKKMDRLQELGIRIALDDF 490 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL ++P +T+K + S + G AI+ + + MA ++ T++A+ + Sbjct: 491 GTGYSSLSYLKHLPINTLKIDQSFVQGLPHDGYDAAIVETTMVMAHHLGLTVVAEGVENR 550 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C Q + PL + +L+ Sbjct: 551 VQLAFLKKQQCHLYQGFLFSQPLNVDRFSELI 582 >gi|83643391|ref|YP_431826.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83631434|gb|ABC27401.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 826 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 146/594 (24%), Positives = 262/594 (44%), Gaps = 14/594 (2%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 +G L I T+ + + + + + + +++ D V Sbjct: 229 LGYLAQIGNQFLETLQKRLEERRQAEETLRDSERQTRQIIDTVPHLIYAKDRNGAFVFVN 288 Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +A+ + G + I + F + ++ E + Sbjct: 289 QALASFYDRNITEIEGGDHHSLHHLISNLESVRFDNEDREVIDKQKVMFIPEHGLTDIYG 348 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + P G I DIT++ ++ + AF D LTG+PNR F DR Sbjct: 349 RRRILQSNKIPFRF-FGKPCALIVSV-DITDRVEAQSRVEQLAFHDPLTGLPNRNLFYDR 406 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 LT + S + +++ID+D +K IND LG +VGD++L ++ + + L + Sbjct: 407 LTMDIARS-RNHGAYGALLLIDLDNFKNINDSLGHSVGDELLRNVAKNLRNCLDEEITVG 465 Query: 611 RLSGNRFGIILI-----SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 RL G+ F +I+ E A + ++ P +E TVTAS+G A + Sbjct: 466 RLGGDEFTVIMPELGRTPEEAEQNANLIAAKVLSELSTPFFFNTQEFTVTASMGVALYPD 525 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723 + +L+ A+ A++ AKH G N V F+ S R+ I+ +L AV++ L Sbjct: 526 KDANTEVILRYADTALFQAKHEGRNKVTIFKAEMADAVSKRLSIENELRTAVKDKALMFY 585 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P + + D I+G EALI+W+HP+ G I+ EF+ + E +I L M + + Sbjct: 586 YQPQVSVTDGRIIGAEALIRWNHPQRGLITPDEFVPVLENSNLILTAGLDMFTQACMQVK 645 Query: 784 SWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W D+ + + +N++ K E E + ++ T I+L +ESVV+ N + Sbjct: 646 EWLDKGWWEEDMRVAVNVSPKQFYQPEFVEQIIEILEATRLPAYCIELEVTESVVIQNVK 705 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILR 900 + + L+ +G+ +LDDFGT S LSYL +P D++K + S +T AI+ Sbjct: 706 DTINKMLSLKGLGVRFSLDDFGTGYSSLSYLKRLPVDSLKIDRSFVTDINSDVNDAAIVS 765 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +I+ MA +++ ++A+ + ++ L CDY Q + PL + +LL+ Sbjct: 766 TILAMAAHLDLEVVAEGVETVEHLEFLKENECDYYQGYLFSKPLPAEEMGELLR 819 >gi|298291384|ref|YP_003693323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Starkeya novella DSM 506] gi|296927895|gb|ADH88704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Starkeya novella DSM 506] Length = 761 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 148/642 (23%), Positives = 271/642 (42%), Gaps = 25/642 (3%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 G A + + + + + L I++ + Sbjct: 105 GEPFIRFYAGAPLALRAGLNIGVLCLWGPEPRTLSASETEIITHLSRIIVDQFRLHEATQ 164 Query: 393 T-------GYFSQGIFS----DGERQSLAVLG----SGDIVWDWDIVRDRVTTTPDIATI 437 SQG+ + R+ + + W++D+ +R+ + I I Sbjct: 165 RTRRELEYRRMSQGLLEMQSRELWRRQSLLAQTERLAKIGGWEFDVATERLNWSDGIYRI 224 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + S+ ++ L + R +F+ ++ + R + E A + Sbjct: 225 YGF-AQSVEPDVQLALSHFPPEARQHFQKKFEAALRNR-ESFEIELPFVDAHGNHRLVRK 282 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + +G++ R G+ D+TEQK++ + + A D LTG+PNR +RL L Sbjct: 283 SCAVEVDGDGEL-RAFGMLQDVTEQKEAEQRMWHMANHDALTGLPNRGLMRERLEAALRR 341 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S V+++D+D++K +ND LG GD +LV +R+G + D++ARL G+ F Sbjct: 342 SRRSRRY-VGVLLVDLDQFKDVNDTLGHDAGDALLVEAAQRLGGCIGDVDMVARLGGDEF 400 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L ++ A ++ +P + ++ SIG A S +LKNA Sbjct: 401 IVLLTRMDSPTDAMVAAQHALSALRLPFSYRRTVLSCRGSIGIAVAPEHGTDPSTLLKNA 460 Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++A+Y AK G + + + R+ + + LA++N E Y P + L I Sbjct: 461 DIALYRAKAAGRGVAVEYDMRMQQATEKRIQLYARVRLALKNGEFQPYYQPKVSLRSGAI 520 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EAL++W HP+ G + EF + ++ + AI +LE RD+ +W Q Sbjct: 521 VGFEALLRWRHPRRGLLGPQEFGQVFDDADLAGAIGERVLELATRDMAAWVAQGCEFG-H 579 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKI 854 + IN++S + L E + + + P R+ + +E+V +G E R L L Sbjct: 580 VAINMSSSEFTRGGLPERVLTALDNSHIQPERLAIEVTETVFLGRGTEMVRHSLQSLNHA 639 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETT 912 G+ + LDDFGT + LS+L P D +K + S + AI+R++I + +++ Sbjct: 640 GVRIALDDFGTGYASLSHLKQFPVDRIKIDRSFVHDIEHDIDDAAIVRAVIHLGQSLGIE 699 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +A+ + L GCD Q + L + I LL+ Sbjct: 700 TVAEGVETPAQAAYLRANGCDLAQGFLYSKALPASRIPALLR 741 >gi|256822028|ref|YP_003145991.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256795567|gb|ACV26223.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Kangiella koreensis DSM 16069] Length = 1128 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 146/555 (26%), Positives = 257/555 (46%), Gaps = 10/555 (1%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R S + + V D + G + G D D Sbjct: 572 RLSTGIDQNPYPVLITDTDGNIQYVNKAFIETTGFSETEAIGKNPIEFSA--EQDPDKTF 629 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 ++ + R + E R D + I P+ N+ G I+ Y+ DIT +K + Sbjct: 630 KMIWRQLA-RGDAWRGELVSRRKDGSHYTEFAMIYPVRNNKGKIINYVAHKEDITLKKIA 688 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I + D LTG+ R+ +RL +LD S TVM +D+D +K IND LG Sbjct: 689 EEKIHQLSNYDQLTGLLKREMLEERLQQLLDDSFKQKQA-MTVMWLDLDNFKTINDSLGH 747 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L+ + R+ L I++R++G+ F +L N A A + + + I Sbjct: 748 QVGDLILIEVANRLRFELGKQSIISRIAGDTFAAVLP-LTNEHSAALIAKNVLEVVQRQI 806 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--D 703 ++++ SIG A + ++ +++ AE AMY AKH G N F Sbjct: 807 KFNSHILSISPSIGLAISPNDGQSADKLIMCAETAMYRAKHDGRNTFRFFAQEMQEHSLR 866 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + + L A+ N + +LVY P + L + +VG EAL++W+HP+WG +S +EF+ +AE+ Sbjct: 867 SLQLSIALKEALTNDQFHLVYQPQMSLSNNSMVGAEALLRWEHPEWGTVSPAEFIPLAEQ 926 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I ++++++A+ SW ++ P + I +N+++ +L E + +L+ K Sbjct: 927 SGLIVQIGEWVIQQVAQQQKSWLERGL-PEVIIAVNLSALQFHQPDLVETITSLVRKAGV 985 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P I++ +E+V + +PE + + L + G +++DDFGT S +SYL +K Sbjct: 986 VPENIEVELTEAVALKDPEVAGTTIDALSRAGFKVSIDDFGTGYSSMSYLKKFAVHKLKI 1045 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + AI+ +II MA ++ T IA+ + + + L + GC+ +Q + Sbjct: 1046 DQSFIKDIVTDIDDQAIVTAIIQMAHSLHKTTIAEGVETQEQLDFLRKKGCEEMQGYWYS 1105 Query: 942 SPLGFNSILKLLKER 956 PL + LK Sbjct: 1106 RPLVTEQFEQFLKSH 1120 Score = 50.3 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 32/315 (10%), Positives = 88/315 (27%), Gaps = 18/315 (5%) Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSE-IALSSSLIIFLFMYLHWNRWHAKVGYITFSGI 290 +I + + V E I + ++ ++++ + L++ R AK+ + + Sbjct: 95 HTISYQGMPDFVTPSGPEKAINFWLAARFTIAFAILLVATITLNFERKLAKLSRYFWLAL 154 Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI----- 345 + + ++ + + + + Y + Y A L + Sbjct: 155 TLMTVGLFHFWFLYFPDSVPDTYSNVEGLTQFKVISEYLLIGLYLVAAFLFINQLNNIRE 214 Query: 346 LIFIWFIGLWMAITK---RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 W + + + L + I + F+ + L Sbjct: 215 FGANWLVAAAITMAMSEFFFTLYANVSDLYNLIGHIYKIFAFSFLYRALFVEAIQSPFMK 274 Query: 403 DGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + S + D++ + D + + +L + G N + Sbjct: 275 MSQLQSKLSATLNALPDLLIEVDAKGNYLDIHSANPELLLRREEKLIGS--NIKEIMDKE 332 Query: 460 DRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + +++ R + E +V + I ++ ++ D Sbjct: 333 NAKRCMQAIETAGQIGRSQGTRIELQV--PSG-VRTFELSISRKKGHLDQPSTFLILSRD 389 Query: 519 ITEQKKSLEGILCNA 533 IT + I A Sbjct: 390 ITSTINIEQHIAHEA 404 >gi|307153628|ref|YP_003889012.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306983856|gb|ADN15737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 709 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 139/564 (24%), Positives = 260/564 (46%), Gaps = 28/564 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q D R + S + + + + P + L Sbjct: 157 EQFQQDDLTRLASFPELSPNPIIEINFQGKITYINPAAY---------LKFSNLQELQLS 207 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H IL + + Q +R + + + N+ Sbjct: 208 HP--------ILSDLLEQSKNT-QGNLLLREVQVEEQVFEQYVHYLPNNK----LIRSYI 254 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE+K S + + AF D LTG+PNR F +L L + + ++ +D+D + Sbjct: 255 FDITERKHSEQQLKYQAFHDLLTGLPNRAWFNQQLNLALSNAKRQQ-VPLAILFLDLDGF 313 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG + GD VL + +R+ ++ D + R G+ F I+L +S A Sbjct: 314 KNINDTLGHSFGDQVLQNFAKRLTGSIRAGDTVCRWGGDEFVILLPYVPHSEDTIKLAQR 373 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + + + P + +++ + S+G A + + +LKNA+ A+Y AK RG NH + + Sbjct: 374 LLEILKQPFEIQKQQFYIKTSMGIALYPHDGEDAETLLKNADAALYRAKERGRNHYQFYS 433 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++S S + ++ L A++N EL L Y P + L EI G+EAL++W HP+ G +S Sbjct: 434 STMTSKASLVLKLENLLHQALDNEELSLHYQPQVNLKTGEITGMEALLRWYHPELGQVSP 493 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++ + +AE+ +I I ++L ++W+ P+ I +N + + L + Sbjct: 494 AKLIPLAEQTDLIIPIGQWVLHTACEQSLAWQKSGLK-PMPIAVNFSPRQFQQPNLVSMV 552 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ +T + P +++ +ES +M N + +R L LR++G+ ++LDDFGT S LSYL Sbjct: 553 TEVLQETGFPPDLLEVEITESTIMQNEDFARQALQELRQMGVHISLDDFGTGYSSLSYLQ 612 Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PF+T+K + + + + +AI+ ++I + +++ +IA+ + ++ L R+ C Sbjct: 613 KFPFNTLKIDQCFIQSLSDRPQDLAIISAMITLGNHLQLRVIAEGVETLQQLELLQRLHC 672 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 + +Q + PL KLL++ Sbjct: 673 EEVQGFWFSRPLKAEDATKLLEQH 696 >gi|298486489|ref|ZP_07004549.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158966|gb|EFI00027.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 636 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 151/583 (25%), Positives = 272/583 (46%), Gaps = 27/583 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 62 QSALEASKEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 121 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + ++D R + + D +++ I + + Sbjct: 122 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 172 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + A DI + K + + A+ D LTG+PNR +DRL+ + L NLR ++ + Sbjct: 173 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 231 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627 D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + + Sbjct: 232 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 291 Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A +R+ +A P+ L + VT SIG + +++LK A++A+Y AK Sbjct: 292 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 351 Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F VS + S R+ ++ DL LA+ +E L + I D+ I G EAL++W Sbjct: 352 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 411 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802 +HP++G +S +F+ I EE MI + +L+ + Q + +NI+ Sbjct: 412 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 471 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + N+ E +Q + + S +KL +E +V+ N + + L + L+++G+S +DD Sbjct: 472 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 531 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 532 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 591 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKERFPLVKN 962 + L R+GC Q + PL LLK++F + Sbjct: 592 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKQQFQETAS 634 Score = 48.0 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%) Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 R + + + R+ LQ +R + + + R R N +G ++ G DIT+Q Sbjct: 1 MRAVYAAALENRQDCLQVTYRFQLQNGTSRLLESRARIYRNEHGQAVKLSGTVLDITQQC 60 Query: 524 -----KSLEGILCNAFQ---DNLT 539 ++ + AF D++T Sbjct: 61 VQSALEASKEKFAKAFHSSPDSIT 84 >gi|46202415|ref|ZP_00053248.2| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 787 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 154/563 (27%), Positives = 255/563 (45%), Gaps = 14/563 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 S AV S V A I G + G L ++ Sbjct: 230 KAEDSVRLLSQAVEQSPVAVAVVGGDAVVQYVNSAHAAITGYPQAQVVGKP---LSGLYP 286 Query: 459 NDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R+ LD G Q E VR D W + ++ G Y+ Sbjct: 287 ---GKARSTLDDLWRSLLTLGEWQGEVHVRRQDGAGQWQRVHGSKVATPGGGGTHYLLQI 343 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D+T +K + A D LT +PNR LDRL+ +DL+ + + ++ +D+D++ Sbjct: 344 EDVTLRKDQERRLQHQAMFDGLTDLPNRVQALDRLSREIDLARERER-KVALLFVDLDEF 402 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD++LV + R+ + +AR G+ F +IL + A Sbjct: 403 KAINDSLGHEYGDELLVLASERLRKAAGDGGTVARFGGDEFLVILGDLEDGATPQRVAAG 462 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + + + P + R++ TASIG A + T +L+NA++AMY AK G N F Sbjct: 463 IVERFSRPFAISRRDLIATASIGLAIYPDDGHTPQTLLRNADIAMYQAKLAGRNRFCFFT 522 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R++ R+ ++ +L AV + +L Y P++ + VG+EAL++W +P+ GN+ Sbjct: 523 SRMNEEAEARLRMEGELRRAVGTDQFHLAYQPLVDVKSGRAVGVEALLRWSNPELGNVPP 582 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ AE +I AI +LE RD W D + + IN++ + D + Sbjct: 583 DRFIPQAETCGVIVAIGRMVLETACRDARRWVDA-GHADLRLCINVSPRQFQDAGFLGHV 641 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +A ++ + SP+ ++L +E +++ +LL L +GI L++DDFGT S LSYL Sbjct: 642 RAALAASGLSPANLELEITEGLLLTERGDVDVLLRALTDMGIQLSIDDFGTGYSSLSYLE 701 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFDT+K + S M G ++R ++ +I+ MA + +IA+ + + LT + C Sbjct: 702 RFPFDTLKIDRSFMIGMLERQERKVLVETIVAMASGLGLKVIAEGVETVEQLAHLTAINC 761 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 D Q + P+ I LL+ Sbjct: 762 DIAQGYLFSRPVPATEIPPLLER 784 Score = 64.2 bits (155), Expect = 1e-07, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 6/114 (5%) Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D+++ D + +P+ + G + + G ++ R R + + Sbjct: 6 PDVLYSIDADGCFIWVSPNAEAVFGYSPLELIGTPAA---RMYS--RPELRAETATRIRE 60 Query: 475 RRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 RGR ++ E +R D W I ++ G G DITE ++ + Sbjct: 61 ARGRAVRAEMEMRRKDGVSIWTAIYACAHFDAEGGFAGINGAIRDITEVWQTRK 114 Score = 45.7 bits (107), Expect = 0.042, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 10/134 (7%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + +R + + + + T+ + I Sbjct: 116 LEDSEDRFRRLSDVATEAI-CIHFEGKIIDMNKAFETLFAYPRDELLTMWA--WDVIDPR 172 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D ++++ YE R D M I + G+ + D+ Sbjct: 173 DIGLAKSMVAQQYEAP-----YEVRGIRKDGSVFPMEIYSKHSWM--GEKSVRVTSIRDL 225 Query: 520 TEQKKSLEGILCNA 533 T+ KK+ + + + Sbjct: 226 TQSKKAEDSVRLLS 239 >gi|257485508|ref|ZP_05639549.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320329233|gb|EFW85230.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330987413|gb|EGH85516.1| sensory box protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010684|gb|EGH90740.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 729 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 150/577 (25%), Positives = 269/577 (46%), Gaps = 26/577 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 155 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 214 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + ++D R + + D +++ I + + Sbjct: 215 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 265 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + A DI + K + + A+ D LTG+PNR +DRL+ + L NLR ++ + Sbjct: 266 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 324 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627 D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + + Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 384 Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A +R+ +A P+ L + VT SIG + +++LK A++A+Y AK Sbjct: 385 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 444 Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F VS + S R+ ++ DL LA+ +E L + I D+ I G EAL++W Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 504 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802 +HP++G +S +F+ I EE MI + +L+ + Q + +NI+ Sbjct: 505 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 564 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + N+ E +Q + + S +KL +E +V+ N + + L + L+++G+S +DD Sbjct: 565 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 624 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 684 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L R+GC Q + PL LL +R Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 721 Score = 92.7 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + +R LA+ + WD DI +R+ + + + G+A+ R + Sbjct: 26 AERVLQQTRDRLELALELAHMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 85 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +R R + + + ++ LQ +R + + + R R N +G ++ G Sbjct: 86 LPAEERRRMRAVYAAALENQQDCLQVTYRFQLQNGTSRLLESRARIYRNEHGQAVKLSGT 145 Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+Q ++ E AF D++T Sbjct: 146 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 177 >gi|148258851|ref|YP_001243436.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146411024|gb|ABQ39530.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bradyrhizobium sp. BTAi1] Length = 1047 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 136/613 (22%), Positives = 261/613 (42%), Gaps = 21/613 (3%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + A R N I +P GG V T ++ + Q + Sbjct: 437 RAAAGGTSQMVIEAGAGRFLNVIDKPLATGGWV--------TTLEDISEHRKLEQERDRN 488 Query: 404 GERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + + D+ R V G + G + + Sbjct: 489 YAFLREIIDHIPSPIMVKDVQDRRYVLVNKSSERCFGRPCEQIVGK--TLFDLMPRPIAE 546 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 D + + G + E + ++ R +++ I + D TE+ Sbjct: 547 KAAADDDRALEHADGLVLEEHPWQTPGLGLRYITSRRIVVTDDRQRPRYLINVIEDTTER 606 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + + E I A D LT +PNR F +R+ ++ + + ++ +DID++K IND Sbjct: 607 RLADERIAHLAHYDALTELPNRVLFRERIAHEIERAR--HGMFFALLYLDIDEFKGINDS 664 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD++L ++ RI L D +ARL G+ F ++L + ++ + + I Sbjct: 665 LGHHVGDELLRTIASRIRSCLAPEDTVARLGGDEFAVLLTMAADRDEVIAKVTEILERIR 724 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700 P L +++ ASIG A + ++ K+A+LAMY AK G + F + Sbjct: 725 EPYRCLGHQLSTDASIGIALAPEHGVEIDQLTKHADLAMYAAKADGRHTFRFFEPAMDES 784 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +R+ +++DL A+ + L Y P++ + + G EAL++W HP+ G + +F+ + Sbjct: 785 ARERLQLQQDLRRAITEGQFELHYQPLLGFRENIMTGCEALLRWRHPERGMVPPLDFIPL 844 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE+ +I I +++ + W I + +N++ L L + + +S Sbjct: 845 AEDTGLINEIGDWVMRTACAEAAHWPS-----DIRVAVNVSPIQLKSPTLALHVASALSA 899 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 +P R+++ +E+V++G+ + + +L +L +G+ + LDDFGT S LSYL PFD Sbjct: 900 AGLAPERLEIEITEAVLIGDDDVALDILHQLHAMGVRIALDDFGTGYSSLSYLKRFPFDK 959 Query: 881 VKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 +K + ++ AI+++++ +A T A+ + L ++GC +Q Sbjct: 960 IKIDRCFVSDIGADSSSAIVQAVVSIAAASNMTTTAEGVETGAQQTALRQLGCTEMQGYL 1019 Query: 940 VASPLGFNSILKL 952 ++P + KL Sbjct: 1020 FSAPKPAAELRKL 1032 Score = 45.7 bits (107), Expect = 0.035, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 42/195 (21%) Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 R ++ A +I ++ + Q + Q + + +R A+ + Sbjct: 319 WRSQVVLLVGAATLAAGVIAVMFSLMIRQILRQNRIARQQLEGEKQRVETALDNMTQGLI 378 Query: 420 DWDIVRDRVTTTPDIATILGLA-------------------SGSMHGPIRNWLPYIHIND 460 +D V +LGL+ GS +G + ++ IH D Sbjct: 379 SFDADACVVMFNRRFIDMLGLSTDVIRPGVHLTEVIAHCKAQGSFNGDVADFCTAIH--D 436 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R + GR + + ++ DI+ Sbjct: 437 RAAAGGTSQMVIEAGAGRFLN--------------------VIDKPLATGGWVTTLEDIS 476 Query: 521 E-QKKSLEGILCNAF 534 E +K E AF Sbjct: 477 EHRKLEQERDRNYAF 491 >gi|330505615|ref|YP_004382484.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328919902|gb|AEB60733.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 959 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 150/955 (15%), Positives = 323/955 (33%), Gaps = 39/955 (4%) Query: 25 MVSPSFAIEPINISSSDRVLDLTSITRI-----YVNQGEDFQVFTAADIDGISRRI--EV 77 + P++A + + DL I + R Sbjct: 16 VTLPAWAGSALPLLKLS-AADLARPVSIEHSLLLEDPSGQLSASEVLQRIEQEGREVQGT 74 Query: 78 SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFS 137 + W L +L+ +I L + D + + Sbjct: 75 ARIGYTRSAWWLAVQLQTPPAERLQLII--GQTFLDDLEVWLFDGEQSLGPLYSGANRAF 132 Query: 138 LDRIPNSDSDVFRITINPGAVVTFIMEISTPNL--PQIYLWEPNFYKDTVNSFTLYRGII 195 +R + + + ++ + + + + L + + L G++ Sbjct: 133 SERGEPYPQFLLNLPRLDDGPHSLLLRVQSHSAINLPLQLVGAEHGQQLIAHSWLQSGLL 192 Query: 196 IGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRA 255 IGV LA++ + Y R + L + V Y + + L + Sbjct: 193 IGVLIALALYYMVKYSTLREAQLAYFSLTSLCVALYNASLYNLAGLLWPQWPLLPKLLIN 252 Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315 + +F+ L ++ ++ + A ++ A L Sbjct: 253 LPTAGMMIFSSLFIASALGL--HLGRLRWLRDALFAATLLVCMGGLLVEHPAAYQTLNLL 310 Query: 316 ASIVLYY-TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374 Y ++ + A + W + + + ++ + AL Sbjct: 311 TLATGLYQMLLMVLGIAQRRPYAPGYLLCWSAALVLMLLVPLSRAGLIPLPAGFYALYAY 370 Query: 375 LVLIVILIGFTVIQHVLATGYF-----SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 L + +L+ ++ L + E+ SG+ ++ + Sbjct: 371 LPALSMLLFGALLDKQLERVRRVLLSSQAQAIDNLEQYQALFRHSGEGIFRCHRDGRLLE 430 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 P +A +LG + + L + + G + E + Sbjct: 431 ANPSLARLLGSEPLPSDLDNLPLQRLL----GETQWRALLRQLDEQAGTVSCECELYDLA 486 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 + W+ + + + + GI D++E++ E + A D LTG+ NR+ Sbjct: 487 QRPRWIYLSLHLRPHQD----FIEGIVVDLSERRALEERLQSLAAHDALTGLLNRRELER 542 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 L+ L +A ++++ +D++K++ND+ G + GD +L L ++ L L Sbjct: 543 LLSETLSGTAKRRFSH--LLLLGLDRFKQVNDLFGHSAGDQLLRQLAGQLQHQLPRHAEL 600 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 AR+ G+ F ++L +++ + R R + SIG + +S Sbjct: 601 ARVGGDEFAVLLREVDDAAALEQAEQLRRAVEQFVFTWQGRPFRLHVSIGMLALSSGVRD 660 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYH 725 L A A AKH+G N V+ F + ++ L A E L + Sbjct: 661 WETALNWASSASQLAKHQGRNRVQQFNPADGALLEHQRQLQWITRLREATERGHFELFFQ 720 Query: 726 PIIR-LMDEEIVGLEALIQWDHP-KWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 P+ + E L+++ P IS ++F+ A + AI+ ++++ + + Sbjct: 721 PVQALQSTAAGLHYEVLLRYHDPHSGEWISPAQFLDAAARYDFLGAIDRWVIQHLCAWLA 780 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 + + +NI++ LLD +Q + + P ++ + +E V +G Sbjct: 781 ANPRHLAQLA-QVNVNISASSLLDCGFHRLLQDELQRHGLPPGKLCIEVTEMVALGELGV 839 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901 S + LR G+ + LDDFG+ + +YL ++P D +K +GS + A++ S Sbjct: 840 SAQWIEELRGKGLKVALDDFGSGFASYAYLRHLPLDILKIDGSFIRDIEHDPINQAMVGS 899 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + +A + +A+ + + + L R+G DY Q V P + + Sbjct: 900 MRQIAAQLGLVTVAEFVETQASLDCLRRLGIDYAQGYFVGRPQPLRQLADDARRH 954 >gi|229106157|ref|ZP_04236711.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] gi|228677275|gb|EEL31598.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] Length = 827 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 156/759 (20%), Positives = 302/759 (39%), Gaps = 30/759 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ + + ++ + + G + S+ Sbjct: 81 ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + H + + + + + Y ++ + + L Sbjct: 137 YLYFYLQDDLSHRSLILLRCLYRVFLLFIAIAATIPRSASSRRNYFIINPTFGKKLLVIF 196 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I K + LI + F++ + + + + + L L + Sbjct: 197 PYLAVAILIGFTFKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKD------LTETLKVF 250 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + V Q S + + ER D + D + + +L Sbjct: 251 NTQLEQKVYQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGIVLNINQSGSVLL 310 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + + G D+ L G + RV+ + + Sbjct: 311 GKDNAELIGKEC--FSIFLDEDKSELEVALKE--GQLCSSSSLQLRVKNNNEKDIHFWYV 366 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 G + DIT K+ E I AF D +T I NR F L ++ Sbjct: 367 TIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIERV 426 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG A+GD VL + +R L LAR+ G+ F Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHAIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + + +L++A+ Sbjct: 486 IIVHNKT-EQQLLDLCETLFRITEKPFVVNQHSFYLSLSIGIALYPFGGTNAKTLLQHAD 544 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 545 IAMYSAKEKGNNTVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQQACRQLKEWHSA-GCTNLKM 663 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANLIDLELTERIAMVDEKETLSKLKALKSYGV 723 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIATSNDGDEIIQTIISLAHTLNMKVI 783 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+ + + + L + C IQ + + P+ + + L Sbjct: 784 AEGVETKEQLTVLQQNACYLIQGYYYSKPINEDEFINFL 822 >gi|46201190|ref|ZP_00055588.2| COG5001: Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum magnetotacticum MS-1] Length = 689 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 144/569 (25%), Positives = 265/569 (46%), Gaps = 13/569 (2%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E LA G+ + D R + + G ++ M G + L Sbjct: 127 ARKQAEESLRLAATVFETVGEAIVVTDGQRRILAVNDAFERMTGWSAAEMVGQSCDLLAV 186 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 I R+ + + G+ E R +++ + + + G R++ + Sbjct: 187 EMIGLRE-VDEMWR--LAAGTGQWSGETWTRRKESEPFPAALALTAV--DQGIDGRFVLL 241 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DIT +++ + I +A D LT +PNR + ++ L + + R V+ +D+++ Sbjct: 242 LRDITRKRRDEQRIRFHASHDALTRLPNRHTVMEALGESIVRADQTGE-RLAVLYLDVNR 300 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND G VGD++L + RR+ ++ D++ RL G+ F ++L S + A Sbjct: 301 FKDINDSYGHGVGDELLRQVARRLKSCVRASDVIGRLGGDEFVMLLPSVGDHSAAQACAN 360 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694 + + A P ++ ++ SIG A + + +L A+ AMYHAK G Sbjct: 361 KVLYAFAEPFDMEGLQLFAGTSIGIALYPDDADGAESLLSRADAAMYHAKRGGLPYSCFD 420 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + ++RV ++ DL LA+ + LVY P + + IVG EALI+W HP ++S Sbjct: 421 IEMDRQVAERVSLENDLRLALGEDQFRLVYQPKVDALSGAIVGAEALIRWRHPMRSDVSP 480 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE +I AI+ ++L R + WR P I +N++ D L + + Sbjct: 481 GLFIPVAERAGLIGAIDDWVLVEACRQVAEWRAAGLNLP-SISVNLSPAQFHDGRLKDKV 539 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +A ++ + SPS ++L +E+++ + +R+ +LG+L +G+ ++LDDFGT S L+YL Sbjct: 540 KAALADSGLSPSVLELEITETMMASDVDRAIEILGQLSALGVRVSLDDFGTGYSSLAYLK 599 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P T+K + + +T K AI+ S+I +A N+ ++IA+ + L GC Sbjct: 600 LFPVSTLKIDRAFVTELPGNAKDGAIIASVIALAGNLGFSVIAEGVETRDQAAFLAARGC 659 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVK 961 +Q + P+ + LL L++ Sbjct: 660 PVMQGFLFSRPVNAATFAALLSNPEGLIR 688 Score = 76.9 bits (188), Expect = 2e-11, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 7/131 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH--INDRDN 463 + + ++ + P +A I G + + + ++ DRD Sbjct: 14 YRSLFENAVEGIYRTTPDGRYLDANPALARIYGYKDPAELIAGLTDIARGLYVDPADRDR 73 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 FR + +E RVR + W+ R +++ ++ Y G +IT +K Sbjct: 74 FR----EILARDSVVSNFEARVRTRSGEIIWIAENARAVTDGRDRLVCYEGTVQNITARK 129 Query: 524 KSLEGILCNAF 534 ++ E + A Sbjct: 130 QAEESLRLAAT 140 >gi|325272366|ref|ZP_08138764.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] gi|324102491|gb|EGB99939.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] Length = 621 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 149/622 (23%), Positives = 283/622 (45%), Gaps = 15/622 (2%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL-IVILIGFTVIQHVLATGY 395 A+ ++ + + + + + L L + + V VL +LI + ++ + G+ Sbjct: 3 ALYVVLSILWLVLAEVMLQSMTDDPLALTVGRQINVVVWVLCSALLIYLSRVRLLHFIGH 62 Query: 396 FSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451 ++ D ER +A + + V D V I G + G Sbjct: 63 GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQHEVIGQRPSK 122 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + H F + + + + G E R + + I + + G++ Sbjct: 123 FKSGRH---GQAFYQQVYATLAEK-GEWSGEIWNRRKSGEIYPQWQTICAIHDDEGELSH 178 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ + +DI+ K S + + A D LTG+PNR F DR+ L + + ++++ Sbjct: 179 YVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFNDRVEQALAAAQANKRG-CALLLL 237 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D ++ IND LG +GD +L + R+G++L LARL G+ FG++ + Sbjct: 238 DLDHFQSINDGLGHTIGDQLLRLVGERLGKILGNGVTLARLGGDEFGVLAEGCQQVGQAG 297 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + + + P + ++ S G + + S + + ++L+NA+ A+Y AK G Sbjct: 298 KLAQGIIERMREPFLFDGHRLFISVSAGISLFPSDALCAEQLLRNADSALYKAKGNGRAC 357 Query: 692 VESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + ++ +L A+E+ EL + + P+ L +VG+EAL++W HP+ Sbjct: 358 YALYTEELTAHAQHRVETAGELRRALEHDELRVFFQPVHDLATGSLVGVEALVRWQHPQR 417 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + EF+ IAE +I I+ ++L + R ++ W+ Q F+ +NI+S+ +E Sbjct: 418 GLVPPGEFIPIAERTGLIAEIDAWVLRQACRQMVQWQAQGRQLA-FVAVNISSRLFGQHE 476 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ T +P+ ++L +ES VM +PE + L RLR++G++L +DDFGT S Sbjct: 477 LYRQVADVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSS 536 Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L L +P +K + + G E IAI+R II +A+++ + A+ I L Sbjct: 537 LLRLKRLPVQKLKIDQGFVAGLPLDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQAAFL 596 Query: 928 TRMGCDYIQDSHVASPLGFNSI 949 + C Q P+ + Sbjct: 597 LQQQCQLGQGYWFGRPVPAADL 618 >gi|85374282|ref|YP_458344.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594] gi|84787365|gb|ABC63547.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594] Length = 740 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 145/569 (25%), Positives = 265/569 (46%), Gaps = 21/569 (3%) Query: 402 SDGERQSLA--VLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 +D R SL + W D + + + A G ++ + G + L + Sbjct: 27 TDPRRLSLLDDFESADLGWFWATDSESKLIYLSENAAAQFGCSADELIGKPLSELFILER 86 Query: 459 NDRDNFRTI----LDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPMSNSNGDILRY 512 + + L + R R+ +D++ W I +P + NGD+L Y Sbjct: 87 GEEEKGEQSPQRPLPFLLRARNTISDLPVRISIGESDDRKIWWSISGKPQLDGNGDLLGY 146 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 G A DIT +++ + A D+LTG+ NR RLTT L +M++D Sbjct: 147 RGSAKDITAVRQNQLEVGRMAQYDSLTGLANRHRMTKRLTTTLTAYKAAKR-SCALMMLD 205 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K++ND LG GD++L + +R+ ++ + RL G+ F +IL + ++ + Sbjct: 206 LDRFKQVNDTLGHPAGDELLKQVGQRLERIIGGNGEIGRLGGDEFQVILPDIEDRGRLGE 265 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + I+ P ++ + S+G A I + E++ A+LA+Y AK G Sbjct: 266 VAARVIQMISQPYSIDGARAIIGTSVGIAIAPYDGIDTEELVGAADLALYAAKGGGRGQY 325 Query: 693 ESFRVSSF--RSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + R I+EDL A+ + L + Y P++ + EALI+W+HP+ Sbjct: 326 RFYSSELKDGARHRREIEEDLRDALSMDQGLEMHYQPLVDAKTHRVKCFEALIRWNHPER 385 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS +F+ +AE+ I + ++L R+ D SW I + +N+++ D Sbjct: 386 GWISPGDFIPVAEDTNQIGDLGEWVLRRVCTDASSWP-----GDISVAVNVSAVQFGDPN 440 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + + + + P R++L +ESV +G+P + + L+K+G++L LDDFGT S Sbjct: 441 LPQIVCKALKDSGLDPRRLELELTESVFIGDPNATHDMFVALKKLGVALALDDFGTGYSS 500 Query: 870 LSYLGYIPFDTVKFNGSLMTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L YL PFD +K + S + GS AI+ +I+ +A + T +A+ + +++ Sbjct: 501 LGYLKNAPFDKIKIDQSFVRGSTENDNNNSAIITAIVSLAGALNMTTVAEGVEAMDELEL 560 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + G YIQ + + + +L+ L+ Sbjct: 561 VRERGATYIQGFIFSKAIPQDVVLEKLES 589 >gi|121997152|ref|YP_001001939.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Halorhodospira halophila SL1] gi|121588557|gb|ABM61137.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halorhodospira halophila SL1] Length = 819 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 144/637 (22%), Positives = 260/637 (40%), Gaps = 17/637 (2%) Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380 + G+ A L+ + + + + + I + Sbjct: 187 IVYANATAGTLTGHSPAELIGQDFGFPVATGSPAEIELHTSGNGNRIVEMRARTMRWEGK 246 Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + V + + ++ + + V D + V I G Sbjct: 247 PAFVLNLHDVTERKRVERELRQA----AIVFEEAREGVIITDAEANIVAVNHAFTQITGY 302 Query: 441 ASGSMHGPIRNWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G +L H + S G E R D + Sbjct: 303 DEDQALGCNPRFLASGFHTPAFYQAMWEAIRSH-----GYWTGEIWNRRNDGTTFAELAT 357 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 IR + + +G YIG+ +DI+ K+ + D LT +PNR F DRL L Sbjct: 358 IRELRDESGRPTHYIGVFSDISRIKEYQTQLERVLHLDPLTELPNRLLFHDRLEQALRQH 417 Query: 559 ATDDNLR--PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 V+V+D+ ++ +ND LG A+GD L + R+ + +ARLSG+ Sbjct: 418 QRQRTNENAVAVLVVDLSDFRAVNDSLGHAIGDRTLRIVGERLDSAMGDSATVARLSGDE 477 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 FG++L + A A + ++ P+ + +I +T +G +++ ++ +L+ Sbjct: 478 FGVLLPQLATADDAASAAERLIEAAEAPLEIDGHQIPITLRVGLSTFPDQAQGANVLLEQ 537 Query: 677 AELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 A+ AMY AK G S ++ +R+ + +L A+ EL L + P + L Sbjct: 538 ADAAMYEAKSEGVSYRFFSEELTERARERIELGAELRQALAGEELALHFQPQVDLDSGRW 597 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +GLEAL++W HP+ G IS F+ +AE ++ + ++L+R R + D Sbjct: 598 IGLEALLRWPHPRRGPISPGRFIPVAERTGLMCQLGAWVLQRACRQYQTLLDAGQDWG-R 656 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + INI + +L D E + + +T + R++L +ES+++ ER L LR+ G Sbjct: 657 LAINITAPELADPTFVERVMRTLEETGLAAERLELEITESLLVNTDERIIERLDALRRHG 716 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913 + + +DDFGT S LSYL +P D +K + S + + + I R+I+ + +++E + Sbjct: 717 VRVAVDDFGTGYSALSYLKDLPVDRLKIDRSFIDNVDQPSRGATITRAILALGQSLELEV 776 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 IA+ I E + L GC Q +A P + Sbjct: 777 IAEGIETEAQRRTLQEAGCLQGQGFFLARPAPLEQLR 813 Score = 48.4 bits (114), Expect = 0.006, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 41/175 (23%), Gaps = 25/175 (14%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG--YFSQGIFSDGERQSLAVLGSGDIV 418 + G V ++ Q + + + + + Sbjct: 119 FISRSFAVTDATGHYKQSVHILEDVTEQRRREHRLSVAESRAREREHQLDRVLSNTAEGI 178 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 D V T+ G + + G + Sbjct: 179 LVVDEHGRIVYANATAGTLTGHSPAELIGQDFGF---------------------PVATG 217 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 E + + N + +R R M G + +D+TE+K+ + A Sbjct: 218 SPAEIELHTSGNGNRIVEMRARTMRWE-GKPAFVLN-LHDVTERKRVERELRQAA 270 Score = 41.5 bits (96), Expect = 0.74, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 6/122 (4%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTIL 468 A+ + V+ D + A GL W + H + + R + Sbjct: 34 ALDAISEPVFIHDEHYRILAANRAYAERAGLTPEEFRQRP-YWEVFPHGDGPLPSCRAAM 92 Query: 469 DS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 D +R R + + + I R ++++ G + + I D+TEQ++ Sbjct: 93 DQGGCGQHRNHRGEITEELALPSGEVF--ISRSFAVTDATGHYKQSVHILEDVTEQRRRE 150 Query: 527 EG 528 Sbjct: 151 HR 152 >gi|27375707|ref|NP_767236.1| hypothetical protein bll0596 [Bradyrhizobium japonicum USDA 110] gi|27348845|dbj|BAC45861.1| bll0596 [Bradyrhizobium japonicum USDA 110] Length = 833 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 158/800 (19%), Positives = 308/800 (38%), Gaps = 46/800 (5%) Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239 + + I G+ + + + + + + G Sbjct: 43 AWARLIWVAIAGAAIGYGIWATHFV--AMLAYEPGVPTNYGLVLTVLSLAAAMILTSGGF 100 Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN---RWHAKVGYITFS--GIACIA 294 VN A +S+ L W + I+ + A Sbjct: 101 GVAVNNSGQWRAAAGGGIIGAGIASMHYIGMWALEVPGRVTWSPGLVLISIGLGMVLGYA 160 Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL----LIPAWILIFIW 350 L + A L ++ + +F ++ L L + + + Sbjct: 161 ALAVALGHKDKWGT-FAAALLLTLAIVSHHFTAMGAVQIVPDPTLASDTLSLSPTFLAVA 219 Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 G+ +++ ++ + I + Q I R A Sbjct: 220 IAGVALSVLGMSFVGVLADRRLATRTSRFEQIISELSLARQQVEDSQQEIQEQKLRLDTA 279 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH------------I 458 + + + +D + V A + L + + H Sbjct: 280 INNMVEALCMFDAEKRLVVCNERYARLYQLPPELLRTGTPHADIIRHRVVTGILKSDTSE 339 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + F + L + EF D + + +PM+ ++ D Sbjct: 340 GAAEQFLSKLAALPFDAVSSRIDEF----TDGRLICV--TRQPMAGG-----GWVATHLD 388 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +TEQ++S I A D LT +PNR +R+ + ++ + L V+++D+D++K+ Sbjct: 389 VTEQRRSEAKIAHMAQHDALTDLPNRVLLRERMEHAIAVT-RNGGLDLAVLMLDLDRFKE 447 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG GD +L ++ R+ E ++ARL G+ F +I N +++ A A +R Sbjct: 448 VNDTLGHPTGDSLLRAVATRLRECTTETALIARLGGDEFAVIDYVTNPAVEAAALAENIR 507 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 K++ P +L + +TV SIG A S ++K+A+LA+Y AK G F Sbjct: 508 KALCEPFDLGDHRVTVGTSIGIAIAPRDGNDSDVIMKSADLALYSAKSGGRGAFRFFEPE 567 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ D+ A+ + L Y P + ++ G EAL++W HP+ G + SE Sbjct: 568 LDELMHARRNLERDMRDAIVGRQFELHYQPFVSPATGKVNGFEALLRWHHPQQGLVMPSE 627 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I + ++L + W P + I +N++ EL + Sbjct: 628 FIPLAEETGLIVPLGEWVLRAACAEAAKWP-----PHVRIAVNLSPAQFRSKELVPVVIG 682 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ + +P R++L +E+V+M + E +LG+LR++G+ + LDDFGT S LS+L Sbjct: 683 ALASSGVAPHRLELEVTETVIMHDSEAVFAVLGQLRELGVRIALDDFGTGYSSLSFLQKF 742 Query: 877 PFDTVKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + + R + R+++ A ++ T A+ + + + L GC Sbjct: 743 PFDKIKIDRSFVNELSSARAEARHLARAVVRFAVSLGKTTTAEGVETKEQLDILCEEGCL 802 Query: 934 YIQDSHVASPLGFNSILKLL 953 Q + + P+ + I ++L Sbjct: 803 ETQGYYFSRPMPASDIARML 822 >gi|95930717|ref|ZP_01313450.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95133197|gb|EAT14863.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 888 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 134/492 (27%), Positives = 243/492 (49%), Gaps = 35/492 (7%) Query: 499 IRPMSNSNGDILRYIGIA---------------------------NDITEQK--KSLEGI 529 P+ + NG++L + + +I+EQ+ + + + Sbjct: 397 GTPIRDHNGEVLGVLSVLSRGKIKSLERAKDVLAIMAARVSAEIEREISEQRLRDNEDHL 456 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 + D LT +PNRQ F DRL + +++ + + V+ ID+D +KKIND LG VGD Sbjct: 457 EYLVYHDVLTDLPNRQLFRDRLQHAISMASLGQH-QVGVLFIDLDHFKKINDSLGHEVGD 515 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L + RR+ + D +ARLSG+ F IIL NN + A + + +A + + Sbjct: 516 RLLCEVARRLRLCIGGLDTVARLSGDEFAIILDQLNNIENVILIAQEVNRRLAEMMVVEG 575 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707 ++ +TASIG + + +LK A+ AM+ AK G ++ + + S+ + + Sbjct: 576 YKLFLTASIGISLYPGDGKDVVSLLKCADAAMFKAKELGRDNYRFYTAGLNERASELLAL 635 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L AV+ + L + + P + L I+G EAL++W HP+ G IS +F+ +AEE +I Sbjct: 636 EGALRQAVDKNHLVVYFQPQVELASRRIIGAEALVRWQHPENGMISPVDFIPMAEETGLI 695 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 +I ++L + W+ A PP+ I +N++++ +L ++ ++ +T SP Sbjct: 696 VSIGEWVLRQSCLQARQWQ-VAGYPPMRISVNMSARQFRQKDLVPMVRRILQETGLSPEY 754 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 + L +ES++M + + + L L +GI L++DDFGT S L+YL P +K + S Sbjct: 755 LDLEITESILMNDVDGAVERLVELHSLGIQLSIDDFGTGYSSLAYLKKFPIQYLKIDRSF 814 Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI ++I +A+N+ +IA+ I + + L GC Y Q + P+ Sbjct: 815 VRDVIIDPNDAAIATAVIDLARNMNLNVIAEGIEQQDQHQFLLDRGCGYGQGYLFSRPIP 874 Query: 946 FNSILKLLKERF 957 + +LL + Sbjct: 875 AHEFEQLLVRQQ 886 Score = 47.6 bits (112), Expect = 0.011, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 5/158 (3%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 + + ++ D E + + V+ D+ + Sbjct: 144 MAETALHLFAMRAAAELERIKIERQRDEELHFLQSLLDAIPNPVFYKDLDSRYLGCNRSY 203 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +L + + G + R D+ V YE + D+ Sbjct: 204 EDLLRKSRQDIIGHRAA--DVMPPL-RAVVAIREDNKVYDSALSRTYESTIEEPDHGTMQ 260 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 ++ P + +G++ +G DI+ ++ + Sbjct: 261 VLFNKAPFFDQDGELAGLVGTIQDISSLREMQSAMQSL 298 >gi|297160240|gb|ADI09952.1| sensory box/GGDEF family protein [Streptomyces bingchenggensis BCW-1] Length = 624 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 134/558 (24%), Positives = 267/558 (47%), Gaps = 17/558 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 A + + + + P + +LG + L + + R + Sbjct: 63 YRAAFNAARLAMAVINREGIVLDANPALGALLGAEPARLIARNAADLADLREDSRT--WS 120 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + RR RL R++ D W I + P+ +S + D++E++ Sbjct: 121 EYRDVLHGRRARLCCTRRLQRPDGHALWAEITVEPVPDS----CSVLLSMADVSERRDLQ 176 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA--TDDNLRPTVMVIDIDKYKKINDVLG 584 + D +T +PNR F +RLT+ L+ +A R + +D+D +K IND LG Sbjct: 177 GRLRHLQMHDPVTRLPNRNLFFERLTSALEAAAYDRGGTGRIGLCYLDLDGFKAINDTLG 236 Query: 585 IAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 VGD +L ++ +R+ E ++ARL G+ F +++ + ++ + A ++ ++ Sbjct: 237 HRVGDRLLGAVAQRLTECAAPDGHLVARLGGDEFALLVRDSTGTEQLCELAKSVLAALQQ 296 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P ++ + ++V+ASIG ++ ++ +++ A+ +Y AK G F Sbjct: 297 PFDVAGQRLSVSASIGVVERPAAGTHTTWLMQAADTTLYWAKEDGKARWTLFDPERNAHR 356 Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + L AVE E L Y P++ L+D + G+EAL++W+HP++G +S + F+ +A Sbjct: 357 MTRQALSSTLRPAVEREEFVLDYQPLVGLVDGVVKGVEALVRWEHPRFGRLSPNRFISLA 416 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE I + ++L R +W+ + P+ + +N+A + + D++L + +++++T Sbjct: 417 EENGAIVPLGRWVLRTACRQARAWQLAHPLNPLIVSVNVAVRQVWDSDLVAEVGSILAET 476 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P ++L +ES VMG+ R L RL ++G+++ +DDFGT S L+YL +P T+ Sbjct: 477 GLPPHLLQLELTESAVMGSAGRPLQALLRLSEMGVAIAIDDFGTGYSNLAYLSRLPVSTL 536 Query: 882 KFNGSLMTG------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 K +GS + G I+++++ +A + T+ A+ + + L R+GCD Sbjct: 537 KLDGSFVQGFRAEEHPNPADETIVQALVELAHRLGLTVTAECVESAEQAERLARIGCDTG 596 Query: 936 QDSHVASPLGFNSILKLL 953 Q + P+ + I ++ Sbjct: 597 QGWFYSRPVPPDRISAMI 614 >gi|217970377|ref|YP_002355611.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|217507704|gb|ACK54715.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 884 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 140/595 (23%), Positives = 257/595 (43%), Gaps = 17/595 (2%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 VG +L+ L ER + + + D + D + + Sbjct: 291 VGKAMLLWALFLGVTGLAAWLLYRLVDANDRANERSRILLQNASDGIHITDAEGIVIEAS 350 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 +LG + + G H + R ++ +E R D Sbjct: 351 DAFCRMLGRSRSEVIGMRAGSWDACHPE--PDMRALISELFA-SSEVHTFETAHRRKDGS 407 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + + P+ +G + + A DI+ +K + + A+ D LTG+PNR+ ++RL Sbjct: 408 VYPVEVTAFPL-EVDGRTVLF-NSARDISARKSAEAEVRKLAYFDALTGLPNRRLLMERL 465 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 A + ++ ID+D +K +ND +G GD +LV + + ++ D +AR Sbjct: 466 ERAQASCARQGTV-GALLFIDLDNFKAVNDTVGHQEGDRLLVQVAAILVRCVRKDDTVAR 524 Query: 612 LSGNRFGIILI-----SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS- 665 L G+ F ++L + + A + ++ L E + SIG + + Sbjct: 525 LGGDEFIVMLEELGGEGREAAEQAAAVGSKILAALNQRFQLGSSEHRTSVSIGVSLFGEL 584 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLV 723 + E L+ A++AMY AK G N V F S R ++ L +A+E + L Sbjct: 585 ADEPVDEPLRRADMAMYRAKLGGRNAVCFFDPSMLADVRARADVEAGLWIALEQRQFVLH 644 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P + D ++G+EAL++W HP G + EF+ +AEE +I + ++LE + Sbjct: 645 YQPQVA-ADGAVLGVEALVRWHHPVRGLVPPGEFIPLAEECGLILPLGRWVLEAACAQLA 703 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 +W D + I +N++++ L + G+ A + ++ P R+ L +ES ++ + ++ Sbjct: 704 AWADDPWRSRLVIAVNVSARQFLHEDFVAGVVAALERSGADPGRLDLELTESSLVTDVDK 763 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + L+ +G+ +LDDFGT S L+YL +P D +K + S + AI R Sbjct: 764 VSEKMEALKALGVGFSLDDFGTGYSSLAYLKRLPLDQLKIDRSFVRDILVDPNDAAIARM 823 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 II +A N+ +IA+ + E L R GC Q ++P +++ L R Sbjct: 824 IIVLADNLGLRVIAEGVECEEQRDFLARNGCSSYQGYLFSAPQPIDALEAFLDAR 878 >gi|91792747|ref|YP_562398.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91714749|gb|ABE54675.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella denitrificans OS217] Length = 888 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 142/566 (25%), Positives = 264/566 (46%), Gaps = 14/566 (2%) Query: 402 SDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + E+ +LA + + V D I G + G N L H Sbjct: 326 AAEEQLNLAATVFSNTVEGVVITDRKGFITEVNSAFTKITGYELDEVKGKNPNVLSSGH- 384 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D+ F + ++ + GR Q E R + + + I I + + N I ++ + D Sbjct: 385 HDQLFFEKLWNTLLIQ--GRWQGEIWNRRKNGEVYPQEITISAVYDDNDTIAYFVAVFTD 442 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ++EQ+ + + + D LT +PNR F+ R+ + + + + V+ ID+D +K Sbjct: 443 VSEQRNTQAKLDKLSLHDPLTQLPNRAQFMSRIDNAIYYAKQ-EGTQLAVVFIDVDFFKH 501 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD +LV L R+ +L +L+RL G+ F +L + ++ + + Sbjct: 502 INDSLGHVAGDTILVELANRLSSILHPGAVLSRLGGDEF-SLLTNMASTDNLIAIVNRIF 560 Query: 639 KSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696 P + + I +TAS+G A + S + +L+NA+ AM+ AK G N+ + Sbjct: 561 SVFEAPFSCSNGQSIRLTASMGLALYPSDGKDNDGLLRNADAAMHRAKQDGRNNYAFYTE 620 Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 ++ + ++ L ++ LVY P + L E +G EAL++W+ P G++S + Sbjct: 621 AMTQESVRLLQLQSALHEGLKMQRFSLVYQPKVDLHSLETMGFEALLRWNDPILGSVSPA 680 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ IAE+ +I I +++L+ + W Q + I +N+AS L N + +Q Sbjct: 681 VFIPIAEKTGLINEIGMWVLKTACEQGVRWLSQGKLFN-RIAVNVASLQLQRNSFVDDVQ 739 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ T ++L +ES ++ NP + + L RLR++GI+L +DDFGT S LSYL Sbjct: 740 QVLLDTGLPAQHLELEVTESCMLQNPAEAIIELKRLREMGITLAMDDFGTGYSSLSYLKK 799 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P D +K + S + AI +++I + + I+A+ + + + L C+ Sbjct: 800 LPLDKLKIDRSFIKNIVQDANNAAIAKAVIALGHALNLQIVAEGVETKEQAEFLRLNDCE 859 Query: 934 YIQDSHVASPLGFNSILKLLKERFPL 959 Q + + P + + L+ P+ Sbjct: 860 QAQGYYFSHPKPSHELDDFLENSPPI 885 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 2/117 (1%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 VW + V + G + + G L F + Sbjct: 222 VWIKNPQGVYVFCNRRVEQAWGRSKQDILGKTD--LELFDEALAQRFIEGDKLAIAQGGP 279 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + E + R +Q W+ P + G+++ IG+ +I + K + E + A Sbjct: 280 VIVAECKDRDQLSQSTWLETFKTPAVTAEGELVGVIGVTRNIAKHKAAEEQLNLAAT 336 >gi|222053961|ref|YP_002536323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] gi|221563250|gb|ACM19222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] Length = 749 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 129/450 (28%), Positives = 225/450 (50%), Gaps = 6/450 (1%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + + + D+T++K + E I A+ DNLTG+PNR +DRL +L + D R Sbjct: 276 ETGYFAFLMEDVTQRKVNEEQIRRLAYYDNLTGLPNRALLMDRLEQMLTKARRD-KTRVV 334 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +D+D++K IND +G A GD +LV + R+ + L+ D LAR+ G+ F ++ E Sbjct: 335 LLFLDLDRFKVINDTMGHAHGDQLLVQVANRLRQALRSSDTLARIGGDEFVVLFTLEGPQ 394 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 L ++ A + SI + R++ + SIG A++ + +L+ A++AMY AK Sbjct: 395 LNVSPLAQHLIDSITSVYPISGRDVYASTSIGIATFPDDGGDCNSLLRCADMAMYAAKEG 454 Query: 688 GGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG + ++ + L A+E E +L + PI+ D +VG EAL++W Sbjct: 455 GGKGYHFYSPEMNLKAHARMEMETNLRHALEREEFFLEFQPIVNARDGRLVGAEALLRWS 514 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 P+ G I F+ +AEE I + ++L R + WR+ PP I +N++ + Sbjct: 515 DPEKGLIMPDMFIQVAEESGFIVPLGEWVLRTACRKMKDWREAGL-PPFRISVNVSGRQF 573 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + ++I +T PS + L +E+ +M + E + L +L+++ IS+ +DDFG Sbjct: 574 CQANFTDTVCSIIRETGMDPSFLALEMTETSLMVDVEATAKALMQLKELDISIVIDDFGA 633 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L YL P D +K + S + + AI+ +II MA ++ ++A+ + Sbjct: 634 GYSSLGYLQKFPIDRIKIDRSFIRDLSSHANDKAIVEAIIAMAARLKLQVVAEGVETSEQ 693 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L GC IQ + PL LL Sbjct: 694 LDFLKEQGCHEIQGFYFHRPLSEELFKTLL 723 >gi|309779289|ref|ZP_07674051.1| sensory box sensor/GGDEF/EAL domain protein [Ralstonia sp. 5_7_47FAA] gi|308921847|gb|EFP67482.1| sensory box sensor/GGDEF/EAL domain protein [Ralstonia sp. 5_7_47FAA] Length = 863 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 140/573 (24%), Positives = 257/573 (44%), Gaps = 17/573 (2%) Query: 390 VLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 L + + R + + S + + + + P G ++ G Sbjct: 291 TLRRRGAERKRHIEDLRLASMVYASSSEAMMVTSLDGHVIDVNPAFTVTTGYSAQEFKGQ 350 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 I + ++D+ +G E+ +R D ++ I ++S Sbjct: 351 SS---DAIRSECNER--AVIDAMREGVSTKGTWSGEYLIRRKDGSEFPALLTIDTFADSA 405 Query: 507 -GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G+ R + + +D+TE+K++ E I A D LT +PNR F +RL + + + + Sbjct: 406 MGEPRRVV-LIHDMTEKKRAEEVIWRQANFDPLTELPNRHMFYNRLRHEIARA-RQASTQ 463 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 ++ ID+D++K++ND LG GD +L + RRI +++ D +ARL+G+ F IIL Sbjct: 464 LALLFIDLDRFKEVNDTLGHDQGDVLLKEIARRISAIVRGTDTVARLAGDEFTIILPDLP 523 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ A+ IA P+ L E + V+ASIG A + ++ +L A+ AM+ AK Sbjct: 524 DAGAATPIIRALLARIAAPLQLGEESVEVSASIGVAMYPRDADSAESLLVRADQAMFAAK 583 Query: 686 HRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N F + R+++ ++ DL +A+ +L + Y PI+ L+ ++ EALI+ Sbjct: 584 SAGRNQWAVFTPALQRAEQERLRVTSDLRVALTQGQLAVHYQPIVDLLTGKVRKAEALIR 643 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G I ++F+ +AE+ +I I ++L + + W + + + +N + Sbjct: 644 WTHPVRGEIDPADFIPVAEDSGLIVDIGKWVLNQALDQLTQWHATLDNT-LQVSVNKSPL 702 Query: 804 DLL-DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + E ++ + +P + + +E +M + L R+ G+ + LDD Sbjct: 703 EFRAHQSSNESWPKVVERRGLAPHSLVVEITEGSLMADSAEVVEHLHEFRRAGVDIALDD 762 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL D +K + S + K IA+ +I+ MA + +IA+ I Sbjct: 763 FGTGYSSLSYLKRFDIDFIKIDQSFVRSLAHDPKDIALCSAIVSMAHALRIKVIAEGIET 822 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 E L GCDY Q P+ + + Sbjct: 823 EEQKAILVAAGCDYGQGHLFCPPVPPAAFESFV 855 >gi|300311036|ref|YP_003775128.1| signal transduction protein [Herbaspirillum seropedicae SmR1] gi|300073821|gb|ADJ63220.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain protein [Herbaspirillum seropedicae SmR1] Length = 750 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 144/573 (25%), Positives = 250/573 (43%), Gaps = 16/573 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + A Q I S + V S D++ +D+ V P GL + I Sbjct: 170 LKAEHAIQQRIRSSERQFRTLVDNSPDVILRYDMEGRCVFANPAFTRETGLMADQDINTI 229 Query: 450 RNWLPYIHINDR-----DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + +D + R + + E+R + I P + Sbjct: 230 LDRSANRRWDDESCSFGERVRQV---AATGVADVVVLEWR--HPQGHLVSHEMHIVPEYD 284 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 ++ I + I D+T +K+ + A D L+G+PNR+ D L + + Sbjct: 285 ADEQIFGTLAIGRDVTRRKEVEFKLRHQANYDPLSGLPNRRLLGDMLQREVASAKKHA-Y 343 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 V+ ID+D++K +ND LG +VGD +LV +R+ ++ D++ARL+G+ F +L Sbjct: 344 PLAVVFIDLDRFKDVNDSLGHSVGDQLLVVAAQRVRASVREHDLVARLAGDEFVAVLPRL 403 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 S + + ++A P L E + ++AS+G A + T + ++ A+ AM+ A Sbjct: 404 EASAALTRIGDDIVAALAEPFQLGEHRVRISASVGIAIYPHDADTVTTLIGCADQAMFAA 463 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F +R + DL A++ + L + P + L I EAL+ Sbjct: 464 KGGGRNGLAFFTEDMREKSFERRRLLNDLYDALQEGQFELHFQPALELQSGVIHKAEALV 523 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIA 801 +W HP +G IS F+ +AEE +I + ++L+ AR + W Q P I +N++ Sbjct: 524 RWRHPAFGMISPDRFIPLAEESGLIFDLGRWILQEAARVSVRWNAQGTSPFRKQISVNLS 583 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 L+ + +S P I + +E +++ + E R L LR GI + LD Sbjct: 584 PVQFLNGHYDAIVMDQLSLQGCQPGLIAIEITEGLLLDDSEAVRSQLNNLRAAGIQVALD 643 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S +SYL D +K + S + + AI+ +II MA + +IA+ + Sbjct: 644 DFGTGYSAMSYLKKFSMDYLKIDRSFVQDMVDADSNKAIVEAIIVMAHRLGMKVIAEGVE 703 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + L GC+Y+Q + PL + L Sbjct: 704 TMVQAQLLRDAGCEYVQGYLYSRPLPEDDFLNF 736 >gi|307608779|emb|CBW98168.1| hypothetical protein LPW_00301 [Legionella pneumophila 130b] Length = 976 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 138/576 (23%), Positives = 269/576 (46%), Gaps = 11/576 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ ++ + + + + A+ S +V D + G + Sbjct: 407 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 466 Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G R ++ + + E + + W+ I P+ N Sbjct: 467 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 522 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 N +I Y+ + D+T++K E + A DNLT +PNR +++L + S ++ Sbjct: 523 ENEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 581 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D++K+IND LG A+GD +L +L+ R +++ D +ARL G+ F +IL + Sbjct: 582 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 641 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A R+ + P + +E+ V+ SIG A + + +++NA+ AMY + Sbjct: 642 MQDKDAEIIAKKCREICSQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTAMYQS 701 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG N+ F+ + ++ + IK +L A +ELY+ Y PII L + ++V EAL+ Sbjct: 702 KIRGKNNWTVFQNTMIEGANNHIRIKTELHQAFTRNELYICYQPIIELKENKVVAAEALL 761 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G I+ + + +AEE MI + ++L+++ W I + +NI++ Sbjct: 762 RWQNTTLGQINPDQIIALAEETGMIIPLGYWILDKVCAQAKEWEFITG-SKIKVAVNIST 820 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + +Q ++ +T S + +ES + + + L +L +GI +LDD Sbjct: 821 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDMGIHFSLDD 880 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FG S L Y+ PF +K + + + +++++ SII MA+N++ ++IA+ I Sbjct: 881 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNQLSLINSIITMARNLKLSVIAEGIET 940 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ + M CD +Q + + PL + L L + Sbjct: 941 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFYLMNK 976 Score = 63.0 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I + Q + + + ER + D ++ ++ + L Sbjct: 283 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVTDGIFIHNLQGAFLEVNEAACLSLN 342 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498 + + + + L+ ++G + E R D + +R Sbjct: 343 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTTFPVDVR 396 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + N+ G+ L + I DIT QK+S I Sbjct: 397 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 428 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 50/170 (29%), Gaps = 12/170 (7%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 +++ F I +L + + + +GD V + P Sbjct: 152 FEILMPFFKDILGLLNLSLAKLMNKKREKLLTTILEKAGDSVEITNEEAVIQYVNPAFEN 211 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I + L + D F I + + + R R D + Sbjct: 212 ITLYNAREAMNKTVASLLRSPVEDAQLFEEINQTLKSGNT--WKGQIRSRKKDGSYWVAQ 269 Query: 497 IRIRPMSNSN-GDILRYIGIANDITEQ-------KKSLEGILCN--AFQD 536 I P+ + G I ++I I DITEQ K S E A D Sbjct: 270 TIIVPVMDDELGRITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVTD 319 >gi|320105453|ref|YP_004181043.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Terriglobus saanensis SP1PR4] gi|319923974|gb|ADV81049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Terriglobus saanensis SP1PR4] Length = 1029 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 137/563 (24%), Positives = 260/563 (46%), Gaps = 21/563 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + S D+ + V P +L M G + L + L Sbjct: 464 IIDASPFSTIVTDLEGNIVAVNPATERMLWYTKAEMVGKM-TPLSLHDPVELKLRAAELS 522 Query: 470 SFV--------------GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + + R + E+ D + + + +++ G Y+GI Sbjct: 523 AGMGVPVAANMEVFIVGPKRGMAEENEWTYIRKDGSRLPVQLTVTALTDDYGHETGYMGI 582 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 A DITE+K+ + I A D+LTG+P R F DR+ L + +M+ID+D Sbjct: 583 AYDITERKRQQDYISHLAHHDSLTGLPTRILFKDRVDVALARVQRYGG-KCALMLIDLDN 641 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND LG GD+VL+ + +R+ E+L+ D ++R+ G+ F ++L + A+ Sbjct: 642 FKDINDSLGHHAGDEVLIVIAQRLKEVLRSTDTVSRMGGDEFTVLLDHITSEEDATTAAV 701 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +++ PI + E + ++ASIG + + TS +LKNA+ AMY+AK G F Sbjct: 702 KLLATLSKPILIGEDLLPISASIGISIYPEGGATSGNLLKNADAAMYYAKGSGKQSYRLF 761 Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + R+ ++ L A+++ E +VY P + L ++ I+G+E L +W + G + Sbjct: 762 TQGLADATTKRLQMEMALKKAIKSQEFSVVYQPQVALANDVIIGVEVLARWKSERLGVVP 821 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 S+F+ IAE+ +I + ++L D+ + D P+ + +N++ + L Sbjct: 822 PSDFIPIAEQCGVIAPLGEWILRTACNDVKALSDSIGR-PLRLAVNVSPRQLEREGFAAR 880 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++ +T++ +++ +E V+M + L L+ G+ + +DDFGT S +SYL Sbjct: 881 VALILVETMFPAEMLEIEITEGVLMSDSLLVWEALKDLQSQGVQMAIDDFGTGFSNISYL 940 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 + + +K + S +T A++ S+I MA + T++A+ + E L G Sbjct: 941 LKLSVNQIKIDRSFITNLEDDPGCDAVVGSLISMANTLGVTVVAEGVETEGQRDILRAKG 1000 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 C Q P+ ++K+L+ Sbjct: 1001 CHEAQGYFYHRPMDVADLMKVLQ 1023 >gi|167035811|ref|YP_001671042.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166862299|gb|ABZ00707.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 568 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 135/561 (24%), Positives = 252/561 (44%), Gaps = 18/561 (3%) Query: 406 RQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDN 463 R AV + ++ + D I G ++ + G L H + Sbjct: 4 RYRAAVDAA--AIFSETDKSGIITYVNEQFCDISGYSAQELIGQNHRILNSGQHP--PEF 59 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIANDITEQ 522 F + + + E R D +W+ I PM + ++ + +Y+ I D+TE+ Sbjct: 60 FIDMWKKVSRGQ--VWKGEICNRKKDGSLYWVESTIVPMYDDASQRVQKYVSIRFDVTEK 117 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 +K LE + A D LTG+PNR L + + + + V V+D+D +K+IND Sbjct: 118 RKLLETLQWQAEHDELTGLPNRFLLSKALDQAIVKAKSQSST-VAVGVLDLDGFKQINDR 176 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G +GD +LV++ R+ ++ D +ARL G+ F ++ + + + +++ Sbjct: 177 YGHEIGDRLLVAVADRLKHSMRIEDTVARLGGDEFV-LISGVRDPKVLESALQRLLAALS 235 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 + I ++ASIG + + + +L++A+ AMY AK G N F VS + Sbjct: 236 AVYVIDGIGINISASIGVTLYPNDNENADTLLRHADQAMYKAKQSGRNCFYLFDVSKDKL 295 Query: 703 DRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + + A+ + EL L Y P I L ++G EAL++W HP+ G I F+ + Sbjct: 296 IKSAFDSVIRVRQALHDGELCLHYQPKISLSSGAVIGFEALLRWQHPRDGLILPQYFIPL 355 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 E+ +I I +++++ I W D + + +NIA+ L + ++ L+ Sbjct: 356 IEQSDLIVEIGEWVIDQALSQIEQWADLGH--SWSVSVNIAALHLKKENFVKSLKFLLDS 413 Query: 821 T-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 P + + +ESVV+ + L + +G++ +LDDFGT S LSYL +P Sbjct: 414 HPNVLPQMLDIEITESVVIEHLSHVTQCLIACQDLGVTFSLDDFGTGYSSLSYLKQLPTQ 473 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 ++K + S + + + + ++II +AK+ +IA+ + L +GCD Q Sbjct: 474 SIKIDKSFIRDILIDKDSLGLTKAIIGLAKSFNREVIAEGVETVEHGVLLMNLGCDVAQG 533 Query: 938 SHVASPLGFNSILKLLKERFP 958 +A P+ + + + P Sbjct: 534 YGIAKPMPVEQVPSWVAKFVP 554 >gi|254459177|ref|ZP_05072599.1| sensory box/ggdef domain/eal domain protein [Campylobacterales bacterium GD 1] gi|207084070|gb|EDZ61360.1| sensory box/ggdef domain/eal domain protein [Campylobacterales bacterium GD 1] Length = 760 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 170/697 (24%), Positives = 304/697 (43%), Gaps = 30/697 (4%) Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332 LH K+ + S I + I + P A + I IY + Sbjct: 80 LHSLEKSFKLHALATSLIISVGIFVLLPENKPFYQAFLTMIVAGLSAGTVMSLSIYKDLA 139 Query: 333 GYERAVLLIP-AWILIFIWFIGLWMAITKRLDNDIIQPALVGG--LVLIVILIGFTVIQH 389 +LL P A + + ++ +I ++ ++Q Sbjct: 140 RNYLIILLAPFAIAMYKFGTEMHILMSLLITLFLMLLITFSKKHHEKIIELITSNMLVQD 199 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 S+ FS V+ +D I+ +L + Sbjct: 200 SEKELKLSESNFSS------IFKEVPIGVFTYDKNLIITEANRSISELLNAPIHKLVNMD 253 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L D+ R LD+ + RG + E+ +D + W+ ++ PM + + I Sbjct: 254 MKLLR-----DQS-IRPQLDATLSGERGYYEGEYHNLISD-EEIWIKMQAVPMYDIDNQI 306 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 +GI DIT + ++ + I AF D+LTG+ NR + DRL + A + ++ Sbjct: 307 KGGLGIVEDITGRIQADKKIRQQAFYDHLTGLANRLTLNDRLEQQIARLARHNRF-GAIL 365 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 IDID +K IND LG +GD +L + +R +++ D +ARL G+ F I+L +++ Sbjct: 366 FIDIDNFKTINDSLGHHIGDTLLKTFAQRASSIMRKEDTVARLGGDEFVILLSDLSDNKN 425 Query: 630 IA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A + A + K + PI + E + VT SIG + + + + +LK+A++AMY A Sbjct: 426 HALEYSHNVARKLHKLMKEPIEVEEHSLYVTLSIGITTISEEEEDINVILKHADIAMYKA 485 Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +G N F +S D++++ +L A+++++ L Y PI+ I EALI Sbjct: 486 KQQGRNTTCFFEQGMSKKIEDQLILGSELREALKHNQFELYYQPIVETKSSIITSCEALI 545 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+HP G I +F+ AEE +I +I ++++R D + I INI+S Sbjct: 546 RWNHPTRGLIYPDDFIPYAEESGLIISIGDWVIQRACIDYKKINHKIKN----ISINISS 601 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K ++ + + +PS +KL +ESV + N + + L+ G ++ +DD Sbjct: 602 KQFNQDDFVTKILKATQEYSVNPSALKLELTESVALDNLLATTDKMNLLKSHGFTIAMDD 661 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +PFD +K + S + E +++++I+ ++K + +IA+ + Sbjct: 662 FGTGYSSLSYLKNLPFDFLKIDRSFIQHVLDNEDDASLVKTILTISKQFKFEVIAEGVEE 721 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + ++ L + C+Y Q V+ L N K L Sbjct: 722 KEHVEFLKDLDCEYYQGFVVSKALPVNEFEKFLNNEQ 758 >gi|149184738|ref|ZP_01863056.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] gi|148832058|gb|EDL50491.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] Length = 710 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 140/569 (24%), Positives = 271/569 (47%), Gaps = 20/569 (3%) Query: 400 IFSDGERQSLAVLG---SGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 +D R+ + +G W D+ + + +LG ++ ++G L + Sbjct: 4 ALNDHARRVELLDSFEKAGLGWFWATDVHGRLIYLSQSAIELLGTSADEIYGAQLTDLFH 63 Query: 456 IH----INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + D + L ++ R ++ + ++ +P + + Sbjct: 64 VDKGDREEDAEREVRPLAYYLSARNSISGLRVKMAIR-GEDRYLEFAGKPHFDRHNKFCG 122 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y G A D+T Q+++ + D+LTG+ NR +L + L +D +M++ Sbjct: 123 YRGSAKDVTAQRETQRDAERLSQYDSLTGLANRHRMHKKLDSRLKHF-RNDKRVCALMML 181 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K++ND LG GD++L + R+G++ + RL G+ F I+L ++ + Sbjct: 182 DLDRFKQVNDTLGHPAGDELLKQVAARLGQICGHLGEIGRLGGDEFLIMLPDVDDRGDLG 241 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 D A + + IA P ++ + S+G A + + E++K A+LA+Y AK G Sbjct: 242 DLAARVIQMIAQPYSINGSRAIIGVSLGIAIAPYDGLDAEELIKAADLALYAAKGGGRGQ 301 Query: 692 VESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + R M++EDL A+ EL + Y PII+ D ++ G EALI+WDHP+ Sbjct: 302 YRFYSSDLKEGAKFRRMLEEDLRDALHKGELAMHYQPIIKAKDYKLSGFEALIRWDHPER 361 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + F+ AE++ MI I + L ++ W + + +N++ + + Sbjct: 362 GFVPPDLFISCAEDIGMISEIGEWALRKVCEQAQQWP-----VELRVAVNVSPTQFANAD 416 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + +Q + + +P R++L +ESV G+ ER+ + L+ IG+ L LDDFGT S Sbjct: 417 FVQIVQRALHASGLAPDRLELEITESVFAGDEERTLEIFHALKDIGVRLALDDFGTGYSS 476 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 +SYL + PFD +K + S + GSTE AI+ +I+ +A+ ++ +A+ + +++ Sbjct: 477 MSYLRHAPFDKIKIDQSFVRGSTEEGNNNSAIISAIVSLARALKMETVAEGTETKDELEL 536 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + G +IQ + P+ + L+ L++ Sbjct: 537 VIKRGASHIQGYIFSRPITHDDALERLEK 565 >gi|196043723|ref|ZP_03110961.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|225864514|ref|YP_002749892.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|196026032|gb|EDX64701.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|225790408|gb|ACO30625.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] Length = 828 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 158/771 (20%), Positives = 304/771 (39%), Gaps = 54/771 (7%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + S+ Sbjct: 81 ILFLSIGDVFLSFIFPIIDLLLLLLGVSLVFRPAIFNAKSK----LFIFILVLTGLSITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + H + + + + ++ P T S + + +I Sbjct: 137 YLYFYLQDDLSHRSLILLRCLYRIFLLFI-AIAATIPRSTYSRRNYFIINPTFGKKLLVI 195 Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 + I + + ++ + + V ++I + Sbjct: 196 F-----------------PYLAVAILIGFTLKEQTASSTLITGNCIAFVFVLIRHTIVRM 238 Query: 388 Q---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 Q S + + ER D + D Sbjct: 239 QNKDLTETLKVFNNQLEKKVSQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGI 298 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + + +LG S ++ G D+ L +G R + RV+ Sbjct: 299 VLNINQSGSILLGKDSAALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVK 354 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + G + DIT K+ + I AF D +T I NR Sbjct: 355 NNNEKDIHFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIF 414 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F L ++ + ++ ID++++K IND +G ++GD VL + +R L Sbjct: 415 FQQELEKSIERAQKTQG-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRAYLSPS 473 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 LAR+ G+ F II+ + ++ D + + P + + ++ SIG A + Sbjct: 474 IPLARIGGDEFAIIVHNHTEQQQL-DLCENLFRITKKPFVVNQHSFYLSLSIGIAVYPFG 532 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724 I ++ +L++A++AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y Sbjct: 533 GINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLY 592 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P I +++G EALI+W HP+ G IS EF+ IAEE I +I + L+ R + Sbjct: 593 QPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKE 652 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + + IN+++ + + + ++I + + I L +E + M + + + Sbjct: 653 WHSA-GYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKET 711 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 L L+ G+ L++DDFGT S L+YL P DT+K + + I+++I Sbjct: 712 LSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 771 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I +A + +IA+ + + + L + C IQ + + P+ + + L Sbjct: 772 ISLAHTLNMKVIAEGVETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 822 >gi|304313323|ref|YP_003812921.1| response regulator/sensory box [gamma proteobacterium HdN1] gi|301799056|emb|CBL47299.1| response regulator/sensory box [gamma proteobacterium HdN1] Length = 704 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 137/591 (23%), Positives = 266/591 (45%), Gaps = 15/591 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434 V++ + + + ++ + + G+ + P + Sbjct: 112 VLVSKVRIFLELDQRQRQLEEALHRLDQLKTSNEVLLRSVGEGIIGVSADGSITFVNPAV 171 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDN----FRTILDSFVGYRRGRLQYEFRVRAADN 490 IL +S + G + + I + V R N Sbjct: 172 EAILSFSSAELIGTQIYKSVIVSAQQSERPDWEQSRIFKACVSGTPYHTDVGV-FRTGGN 230 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + PM + G + + DITE++K E + A D LTG+ NR F + Sbjct: 231 RVIPVEYTSSPMHSPTGKFDGVVIVFKDITERRKIEEKLNYMAQYDALTGLGNRNLFSNA 290 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L + S N ++ +D+D++K++ND LG GD +L + RI ++ D+L Sbjct: 291 LNNAIAQSRHTQN-PFALLFLDLDRFKQVNDTLGHDAGDLLLKDVAGRIRNCIRDADVLC 349 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 R+ G+ F +I+ + + + ++ + E+EI V SIG + + Sbjct: 350 RIGGDEFTLIIAGAAIEIAAQRVSEKLISELSRSFEIYEQEIYVGGSIGIVYYPEMGADA 409 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPII 728 +E++KNA++AMY AKH G N + F + + ++ +L AVE+ + ++ Y P Sbjct: 410 NELIKNADMAMYQAKHEGRNRFKVFDPNMRAQIEETMALEVELRRAVESMDFFVHYQPKY 469 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 ++D I+G+EALI+W IS + F+ IAEE +I +I ++ E + +W + Sbjct: 470 DMIDGSIIGVEALIRWRVGDR-MISPAAFIPIAEETGLISSIGRWVFEASCSQLRAWDQK 528 Query: 789 ANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 ++P + +N++ + L D L + +I + +S +++ +ES+ + + Sbjct: 529 FHLPDGFRVSVNMSVQQLHDPLLVNMVHRIIDQCGFSHGLMEIEITESLFFERTQEAVSR 588 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMA 906 L LR++G+ + LDDFGT S LSYL +P +K + + + T++ IAI+ +++ +A Sbjct: 589 LESLRRLGVGIALDDFGTGYSSLSYLTKLPLTVLKIDKAFVDEIQTQQGIAIISAVVALA 648 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + + +IA+ + E + L ++GC + Q PL ++ L E+F Sbjct: 649 RGLNIDVIAEGVETEDQVDRLVQLGCRFAQGYFFNRPLSVEALDTLFSEKF 699 >gi|253699305|ref|YP_003020494.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M21] gi|251774155|gb|ACT16736.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M21] Length = 742 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 139/598 (23%), Positives = 274/598 (45%), Gaps = 30/598 (5%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-- 427 ALV G + + + A + + E+ + + + R Sbjct: 142 ALVVGALAGALAFFRLRTVPLRALDEAYRVLKQSEEKYRSVYESLNEGLALYRASRREDG 201 Query: 428 ------VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 P + G + + G I L + + + L + RG + Sbjct: 202 SADLVLTDVNPAAINVFGFSRDDIGGWITELLNGLFAESTEQIFSALQA-----RGEVSL 256 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA-NDITEQKKSLEGILCNAFQDNLTG 540 E + + + ++ PM + D+TE+K++ E + A+ D+LTG Sbjct: 257 ELE-QNSTGRIF--LLTAFPMG------YGMVATLLEDVTEKKRTAEQLERLAYYDSLTG 307 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 + NR+ LDR+ + + + ++ + +D++ +K IND LG GD +L+ + +R+ Sbjct: 308 LLNRRMLLDRMEQAIGTAQR-EGVKVATLFMDLNGFKVINDTLGHKAGDQILIEVAKRLQ 366 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 ++++ D LARL G+ F + E + + A + +I + +RE+ V AS+G Sbjct: 367 KVVRKRDTLARLGGDEFVVAATFEKD-DNASAIAKNLINAITPVYQVCDREVYVGASVGI 425 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENS 718 + + +LKNA++AMY+AK +G + +++ +R+ ++ L AVE Sbjct: 426 SIFPDDGDVPETLLKNADIAMYNAKSQGRGDFCFYSAQLNERLHERMQLEFKLRGAVERE 485 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 E +L Y PI+ I +EAL++W+ P+ G + F+ +AE+ +I + ++L Sbjct: 486 EFFLEYQPILDSKTGRITAVEALLRWNDPERGMVMPEAFIPLAEDTGVILPLGEWVLRTA 545 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 + W+D + P+ + +NI+ K +L + ++ + ++ PS ++L +E+ ++ Sbjct: 546 CAKVRQWQDA-GVMPVRMAVNISGKQFTQGDLSKTVEEALLESGVHPSWLELELTETCLV 604 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRI 896 N E + L RL+ + +S+++DDFGT S L YL P D +K + + Sbjct: 605 KNIEDTVKKLCRLKGLSVSISIDDFGTGYSSLQYLKNFPIDHLKIDRGFINNVCELPDDR 664 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 AI+ +II +AK ++ +IA+ + + L R GCD Q + PL +L++L Sbjct: 665 AIVDAIIGIAKAMDLHVIAEGVETRQQAEHLVRRGCDEFQGYYFYRPLSEEKLLEVLA 722 >gi|170694697|ref|ZP_02885848.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia graminis C4D1M] gi|170140328|gb|EDT08505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia graminis C4D1M] Length = 765 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 139/610 (22%), Positives = 263/610 (43%), Gaps = 19/610 (3%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + A+ R L I +G V Q +A Q + + E Sbjct: 151 AGAVLGAFAVYHREPRRPTAQEET-MLRDIGRSVGLAVHQDAMA-----QRLANSEEHHR 204 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 L V + + + P +L + IR + D + Sbjct: 205 LVVDHLIEGIVVQSREGVVLACNPSAQRMLRTGPQIVGRSIRTVMVRGFHEDGSPVKEDE 264 Query: 469 D---SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKK 524 + + L V + W+ + P+ + DI ++ Sbjct: 265 RPTSQVLATGKPMLGVTLAVELVSGEVIWITENVVPILKPGQSKPDSVLISFTDIGPVRE 324 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT---VMVIDIDKYKKIND 581 + + A +D+LTG+ NR +R+ ++ A + + V+ +D+D +KK+ND Sbjct: 325 AQRQLKFLATRDSLTGLYNRAYLTERMNSLFAPGAPNGSGEFANVAVLFVDLDGFKKVND 384 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD +L S+ +R+ + D LAR+ G+ F I++ + + S ++ A + I Sbjct: 385 TAGHEAGDALLKSVAQRLAGCVGPDDTLARVGGDEFVIVVGASDCSDRLIALARHILDEI 444 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 A+P + + E + ASIG + + + +++NA+ AMYHAK RG N+ + F + Sbjct: 445 AVPFAVADNEYYLGASIGISRFPEDGQDAPTLMRNADSAMYHAKQRGRNNFQFFTAELNQ 504 Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + I++ L A+ EL LVY PI+ +G EAL++W + + GN+S +EF+ Sbjct: 505 QLQRRFVIEQSLRRALAGGELSLVYQPIVDSHAGRTIGAEALLRWYNSELGNVSPAEFIP 564 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AE+ +I I ++L WR P + + +N++ + D L E ++ + Sbjct: 565 VAEDAGLIAEIGEWVLAHACEQAARWRRTLA-PDLIVAVNLSPRQFND-GLVERIRRCLD 622 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 ++ P+ ++L +E ++M + + +L L G+ +++DDFGT S LSYL P Sbjct: 623 QSGLDPAALELEITERLLMSDSDTVLPMLQTLSATGVRISVDDFGTGYSSLSYLKRFPLH 682 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + G IAI ++++ MA ++ + A+ + L + CD Q Sbjct: 683 NLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETPEQAAFLRSIDCDKQQG 742 Query: 938 SHVASPLGFN 947 + P+G + Sbjct: 743 YLYSRPVGAS 752 >gi|52840285|ref|YP_094084.1| sensory box protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627396|gb|AAU26137.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 985 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 138/576 (23%), Positives = 268/576 (46%), Gaps = 11/576 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ ++ + + + + A+ S +V D + G + Sbjct: 416 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 475 Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G R ++ + + E + + W+ I P+ N Sbjct: 476 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 531 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 N +I Y+ + D+T++K E + A DNLT +PNR +++L + S ++ Sbjct: 532 DNEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 590 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D++K+IND LG A+GD +L +L+ R +++ D +ARL G+ F +IL + Sbjct: 591 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 650 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A R+ + P + +E+ V+ SIG A + + +++NA+ AMY + Sbjct: 651 MQDKDAESIAKKCREICSQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTAMYQS 710 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG N+ F+ + ++ + IK +L A +ELY+ Y PII L + ++V EAL+ Sbjct: 711 KIRGKNNWTVFQNTMIEGANNHIRIKTELHQAFTRNELYICYQPIIELKENKVVAAEALL 770 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G I+ + + +AEE MI + ++L+++ W I + +NI++ Sbjct: 771 RWQNTTLGQINPDQIIPLAEETGMIIPLGYWILDKVCTQAKEWEFITG-SKIKVAVNIST 829 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + +Q ++ +T S + +ES + + + L +L +GI +LDD Sbjct: 830 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDMGIHFSLDD 889 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FG S L Y+ PF +K + + + ++++ SII MA+N++ ++IA+ I Sbjct: 890 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNELSLINSIITMARNLKLSVIAEGIET 949 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ + M CD +Q + + PL + L L + Sbjct: 950 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFYLMNK 985 Score = 63.4 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I + Q + + + ER + D ++ ++ + L Sbjct: 292 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVADGIFIHNLQGAFLEVNEAACLSLN 351 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498 + + + + L+ ++G + E R D + +R Sbjct: 352 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTTFPVDVR 405 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + N+ G+ L + I DIT QK+S I Sbjct: 406 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 437 Score = 60.3 bits (145), Expect = 2e-06, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 3/153 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 +++ F I +L + + + +GD V + P Sbjct: 161 FEMLMPFFKDILGLLNLSLAKLMNKKREKLLTTILEKAGDSVEITNEEAVIQYVNPAFEN 220 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I + L + D F I + + + R R D + Sbjct: 221 ITLYNAREAMNKTVASLLRSPVEDAQLFEEINQTLKSGNT--WKGQIRSRKKDGSYWVAQ 278 Query: 497 IRIRPMSNSN-GDILRYIGIANDITEQKKSLEG 528 I P+ + G I ++I I DITEQ Sbjct: 279 TIIVPVMDDELGRITQHIAIKQDITEQVHRFNQ 311 >gi|260577386|ref|ZP_05845355.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sp. SW2] gi|259020389|gb|EEW23716.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodobacter sp. SW2] Length = 854 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 155/642 (24%), Positives = 277/642 (43%), Gaps = 26/642 (4%) Query: 332 KGYERAVLLIPAWILIFIWFIGLWM------AITKRLDNDIIQPALVGGLVLIVILIGFT 385 + + A L + A +++ F+ M T Q AL V + I Sbjct: 213 RDHTAAFLGVLALVILAATFVVFRMGLRAERLQTIYEMARKHQAALQHKNVELSAEISHR 272 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASG 443 I S+ + E +A S + + D+ + +A ++G Sbjct: 273 QIVE-HDLKTKSEELDRTNENLKIAATAFESQEGMAVLDMGGRILRVNAALARLMGCEPN 331 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 S+ G + + I D + L++ + + + R +A + + P+ Sbjct: 332 SLLGRL--FEEMIV--DEEAGGLGLNTALRE-GCPWKGDVRTKAVSAAGASLWFTLSPVM 386 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G IG D+++++K+ I AF D LTG+PNR DR + +A Sbjct: 387 SDKGLPTSMIGTFYDVSDRRKAERQIKRLAFYDQLTGLPNRHLATDRTIQAMRTNAQSGE 446 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI- 622 ++ ID+D++K++ND LG VGD +L ++ RI L +AR G+ F ++L Sbjct: 447 F-GALLFIDLDQFKRLNDTLGHDVGDKLLKAVADRISRRLGGDSTVARFGGDEFVVLLPT 505 Query: 623 -----SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 + +L A + + P L E + SIG A +++ T ++LK A Sbjct: 506 LKTVIERDAALLAEHAAELVLRIFKQPFQLEGYEHNCSTSIGIALFSAPLETFDDILKRA 565 Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++AMY AK GGN + F R + V + DL AV+ E P I + Sbjct: 566 DIAMYEAKGAGGNVIRFFDPEMQRVVREEVSLDADLRTAVDRGEFEFHLQPQIN-RFGTV 624 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG E L++W HP G +S F+ IAE+ +I + ++L+ A+ + +W + I Sbjct: 625 VGAEVLLRWPHPVRGLVSPGVFIPIAEKSGLIVPLGNWVLDCAAKVLSNWAAKELFSDIN 684 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + IN+++ L + E + I + P R+KL +ES+++ N + + + L++ Sbjct: 685 LSINVSANQLHSEDFVETVLGAIERHGARPRRLKLEITESLLVNNLDDAIRKMTALQQHE 744 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 I +LDDFGT S LSYL +P D +K + S ++ + AI I+ + + + + Sbjct: 745 ILFSLDDFGTGYSSLSYLKQLPLDQLKIDRSFVSDLPQNKNDAAIAEMIVALGRTLGLHV 804 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 IA+ + E L +GCD Q P+ + + + Sbjct: 805 IAEGVETEEQKGFLEGIGCDQFQGYLFGVPMPLDQFEEFVSA 846 >gi|71280809|ref|YP_268663.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71146549|gb|AAZ27022.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 692 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 146/563 (25%), Positives = 261/563 (46%), Gaps = 15/563 (2%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 SQ +F + D+ + ++ V L +A G Sbjct: 136 HAQSQALFKEH-MLETIFNAIPDLFFLMEVDGMIVDYHTGDQKNLYVAPHQFIGK--RMT 192 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + F+T +D + G + +E+ + R+ + N + + Sbjct: 193 DLLPQEVVSKFQTHVDKILQQE-GMITFEYELTMPHG-LVHFEARMSYLPEYN----QIV 246 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 I DI+EQ KS E I A+ D LT +PNR LDRL+ +L + + N + V+ +D+ Sbjct: 247 LIIRDISEQYKSAEIIRHQAYFDTLTSLPNRFLALDRLSQMLTEAERN-NEKIAVLFLDL 305 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +KKIND LG +GD VL+ R+ ++L+ D + RL G+ F ++L + Sbjct: 306 DDFKKINDSLGHEIGDKVLIQSAHRLKQVLREGDTVGRLGGDEFIVLLRGVTENHDALVI 365 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + KS P + RE+ +T SIG A + +S++L+NA+ AMY AK G N Sbjct: 366 TENLLKSFREPFVIDGRELMLTLSIGVAISPENGRCASDLLRNADTAMYKAKDLGRNTYS 425 Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F ++E + A+E +E L Y P + ++I G+EAL++W + GN Sbjct: 426 FFSKKMNTMMLRRFEVEEQMHGALERNEFELYYQPQFDVKKQKITGVEALLRWHNSVLGN 485 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 ++ EF+ IAE +I I F++++ + W++ + + +N++ D+ L Sbjct: 486 VTPDEFIPIAEHTGLIIPIGRFVIKQALGFLNKWQN-IHQQKFTMAVNLSPCQFRDSTLL 544 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ +S+T ++L +E V+M L + ++GI L++DDFGT S LS Sbjct: 545 GFIKDSLSETNVIAEHLELEITEGVLMSGQSHIHDALVEISELGIKLSMDDFGTGYSSLS 604 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL FD +K + S + G + ++ +II MA ++ T++A+ + + + L Sbjct: 605 YLRQYAFDVLKIDQSFIRGIPLNKADCELVNTIIAMAHSLGLTVVAEGVETKEQLTLLEE 664 Query: 930 MGCDYIQDSHVASPLGFNSILKL 952 +GCD +Q + + P+ +L Sbjct: 665 LGCDLVQGYYFSKPIPAKQLLDF 687 >gi|237801120|ref|ZP_04589581.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023977|gb|EGI04034.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 719 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 148/580 (25%), Positives = 268/580 (46%), Gaps = 26/580 (4%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN-- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 146 RAQAALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFCRLTGFSAQEVVGRTAHEI 205 Query: 452 --WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 W + R + + + E R + + I + ++ + Sbjct: 206 GIWTDTL-------QREYMIDELRLKGRVHHREMNGRDKNGDPLVLDISVDFITL--NET 256 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + A DI + K + I A+ D LTG+PNR +DRL L L NLR ++ Sbjct: 257 ACLLMNARDIGQLKNAQAQIHHLAYHDPLTGLPNRALLMDRLGQQLSLLK-HQNLRGALL 315 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + SL Sbjct: 316 FLDLDYFKHINDSLGHPVGDSVLNVVAARLEASVRQEDTVARLGGDEFVVLICGLDGSLD 375 Query: 630 -----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + +R +A P+ L + VT SIG +T +++LK A++A+Y A Sbjct: 376 EVTRKVRVLSDNLRVLLAEPMFLDGHRLQVTPSIGIVLIPDDGLTPADVLKRADIALYRA 435 Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N + F VS + S R+ ++ DL +A+ +E +L + + D +I G EAL+ Sbjct: 436 KDAGRNTSQFFHVSMQQAVSKRLQLENDLRMALTRNEFHLHFQAQVDCRDNQITGAEALL 495 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINI 800 +W HP++G + +F+ I EE MI + +L+ + Q + +NI Sbjct: 496 RWQHPEYGLLPPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVAKDRFLMGVNI 555 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + N+ E ++ + + S +KL +E +V+ N + + L + L+ +G+S + Sbjct: 556 SPRQFRQNDFVERVEHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMRSLKSLGVSFAM 615 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL +P DT+K + S + + I+R+I+ MA++++ +IA+ + Sbjct: 616 DDFGTGYSSLTYLKRLPVDTLKIDQSFVQDAANDPNDAEIIRAIVAMAQSLKLNVIAEGV 675 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + L ++GC Q + PL LL+ + P Sbjct: 676 ETPEQLAFLEKVGCYNYQGYLFSEPLPGPEFESLLQLKRP 715 Score = 84.2 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 8/153 (5%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + G+R LA+ + WD D+V +R+ + A + G+ + + Sbjct: 18 DALRLLKETGDRLQLALDLAQMGTWDLDVVSNRMQASTQTAYLHGMGAQPFDDDAERFFS 77 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + +R + V LQ +R + D + R R ++ G + R G Sbjct: 78 RLPTEERRRICDAYQAAVDNHDDYLQIIYRFQLIDGSSRLLESRARLYRDAQGQLSRLAG 137 Query: 515 IANDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+++ ++ E AF D++T Sbjct: 138 TLMDITQKRAQAALEASEEKFAKAFHSSPDSIT 170 >gi|83592879|ref|YP_426631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83575793|gb|ABC22344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 764 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 154/589 (26%), Positives = 265/589 (44%), Gaps = 19/589 (3%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 L+ + A + S AV S + D P I Sbjct: 166 GALLSMVTFVDITARRESEAAVIK----LSHAVEQSSASIVITDADGRIEYANPAFTKIS 221 Query: 439 GLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G + L + + +R + + G + EF R D +W + Sbjct: 222 GYTAQEAIGRRPSILKSGLVPA--ETYRALWQTITNG--GEWRGEFHNRRKDGTLYWEMA 277 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 I P+ ++ G I ++ + +D+TE+K + A D LTG+PNRQ LDR++T LDL Sbjct: 278 SISPIRDARGKITNFVAVKDDVTERKAIESELYHRANYDALTGLPNRQLLLDRVSTALDL 337 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + D R VM +DID++K+IND +G A GD +L R+ +L+ D L RL G+ F Sbjct: 338 ARRHDR-RVAVMFMDIDRFKQINDSMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEF 396 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++ + A + + P + RE+ V+ SIG + T+ +++NA Sbjct: 397 LVVAPGLRWESEATALASRLLEVARRPFTIDGREVYVSVSIGVSLGPVDGTTAQALMRNA 456 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY AK G + F + R + + L AV + LYL PII D + Sbjct: 457 DAAMYLAKGGGRDAAHFFTPDIEAAARRRMLIENGLRTAVSDGSLYLALQPIIACADHTM 516 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 + EAL++W HP+ G + SEF+ IAEE +I+AI +++E AR ++S D Sbjct: 517 IKAEALLRWTHPQLGGVPPSEFIPIAEESGLIRAIGAWVIEEAARLLVSL-DPPRDGAFR 575 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + INIAS L + ++++ P +++ +E +++ + LR +G Sbjct: 576 LGINIASSQFT-GGLHHHVAGMLARYDLDPRMLEIEITERMLLDPSPAILEQVDALRAMG 634 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 +S+ +DDFGT S LSYL DT+K + + ++ T++ A++ +I+ + + + Sbjct: 635 VSIAIDDFGTGYSALSYLSVFHVDTLKIDRAFVSVMTDEARSQALIGAIVALGHELGCAV 694 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 +A+ + + L + D +Q + P +I L P Sbjct: 695 VAEGVETADQARLLGELAVDALQGYFLGRPTTAEAISDRL---NPGTGR 740 Score = 46.9 bits (110), Expect = 0.020, Method: Composition-based stats. Identities = 20/181 (11%), Positives = 47/181 (25%), Gaps = 28/181 (15%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + ++ ++ + + + + D V ILG Sbjct: 13 FLSAGLLLALVHGRRVGRRADRQCRHLAAITDTMSEGFYVVDGDDRIVMANAAAGRILGY 72 Query: 441 ASGSMHGP-IRNWLPYIHINDRDNFRTI---LDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + G +D D L+ V RR R + + Sbjct: 73 TQDDLIGACAHALFHARSADDPDPVPLEECRLNRAVRERRAAFLDVGHFRHRSGKIIAVE 132 Query: 497 IRIRPMSN-----------------------SNGDILRYIGIANDITEQKKSLEGILCNA 533 + P+++ + G +L + DIT +++S ++ + Sbjct: 133 VSCNPVADTLAEEGRRGGLLGWLLDGDDAEGAPGALLSMV-TFVDITARRESEAAVIKLS 191 Query: 534 F 534 Sbjct: 192 H 192 >gi|56477083|ref|YP_158672.1| hypothetical protein ebA2924 [Aromatoleum aromaticum EbN1] gi|56313126|emb|CAI07771.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 948 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 139/630 (22%), Positives = 256/630 (40%), Gaps = 17/630 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDND--IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + + L + + + P + I+ +G+ + + Sbjct: 326 IGRAIGLGSLVLLPPLASGFVLARTQLWIPPAAATIGFIIGYLGWFAVDLRRSRRGLRHA 385 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + D V D V P + GL L Sbjct: 386 RQDADA----TLRSIADAVVTVDDDCRIVLMNPVAERLTGLPLAGAQQRRLGELLDTFTE 441 Query: 460 DRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 R L + RR RL R D + + I P+ + ND Sbjct: 442 QRAQIDETLGVCLQQRRMIRLPEPIAWRMPDGTVCALRLTISPIGE---RAEGAVLAFND 498 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +TE + + A D LTG+PNR LDRL L + ++ +D+D++K+ Sbjct: 499 VTEALAATSRLEHEATHDTLTGLPNRALLLDRLHHALAQADRR-CTMIALLFVDLDRFKR 557 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD VL + R+ ++ D +AR G+ F +++ + ++ +A A M Sbjct: 558 INDSLGHHAGDRVLEIVAERLTAAVRGGDTVARWGGDEFVVLMENLDDQPAVAAIAHKMI 617 Query: 639 KSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + + + + ++ SIG + +L A+ AMY AK +GG + Sbjct: 618 ELLERDVEAEPGTNLALSCSIGIGVGPRDSADAGTLLLMADRAMYRAKRQGGGSYTFYSP 677 Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 DR+ ++ L A++N E L Y P I + +VGLEALI+W I Sbjct: 678 EMNTWSRDRLKMESALRAALQNREFELHYQPQIDIRSGRLVGLEALIRWRRADGELIRPD 737 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ AEE +I+ I +++ W+ + P+ + +N++++ D + + ++ Sbjct: 738 AFIPAAEESGLIRGIGDWVIREATSQAARWKSEGL-LPVPLAVNVSAQQCSDMNVVDTIR 796 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + + + +P+ +K+ +ES M + ER LL + ++G+ + +DDFGT S LS L Sbjct: 797 SALEDSGVAPAMLKIELTESTAMHDAERVAELLSSIDRLGVGVAVDDFGTGYSSLSLLKR 856 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +K + S + AI+R I +A ++ T++A+ + + ++ L R C+ Sbjct: 857 FPISELKIDKSFVHDITSDADDAAIVRGTIALAHSLGMTVVAEGVETQAQLRFLARHRCN 916 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963 Q + PL + + L+ P ++ T Sbjct: 917 IAQGLLSSPPLPADEVRNWLEASAPGLRRT 946 >gi|319760863|ref|YP_004124800.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317115424|gb|ADU97912.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 1100 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 149/552 (26%), Positives = 266/552 (48%), Gaps = 12/552 (2%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464 R S A+ S V D+ + + + + G ++ + G L + R + Sbjct: 547 RLSEALEQSPHQVVITDVRANVLYVNRAFSEVSGYSAQEILGKNPRMLQSGLTP--RSVY 604 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + Q E R + + I+ + P+ + +G + Y+ DIT Q++ Sbjct: 605 EEMWRRLPQGQ--PWQGELVNRRKNGHIYTEIVSLYPIRDLSGQVTHYVAHKEDITVQRE 662 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + E I + D LTG+ N++SF +RL ++ + R +++ D+D +K IN+ LG Sbjct: 663 AEERIQALSNFDTLTGLLNKKSFDERLALAIERAGASHG-RLSMLWFDLDNFKLINESLG 721 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD++LV R+ L + LAR SG+ F I+ + + +A A + + Sbjct: 722 HTAGDELLVEAANRLRSCLGTQNALARYSGDAFVAIVP-QADQASVALMAQEALRLLQTA 780 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 ++ ++V+AS G A + T+ + AELAMY K G N + F + Sbjct: 781 TSVQGHPVSVSASAGVAVYPDDARTAGTLASAAELAMYRVKEDGRNGLRFFAPEMQAHTQ 840 Query: 705 VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ L A EL+LVY P L +VG EAL++W HP+WG +S +EF+ IAE Sbjct: 841 RSLELAAGLKDAARKGELFLVYQPQRALGSGALVGAEALLRWRHPQWGLVSPAEFIPIAE 900 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + I AI+ +++E+ A+ + +W D A +PP+ + +N+++ +L E + ++ + Sbjct: 901 QSGAITAIDFWVVEQAAQQLRAW-DAAGLPPLVVAVNVSAAQFARPQLAEELLHILQRVD 959 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 SP RI++ +E+V + +PE + + RL +G + LDDFGT S +SYL D +K Sbjct: 960 VSPQRIEVELTEAVALKHPELAETTIRRLHDMGFKVALDDFGTGYSSMSYLKRYTIDKLK 1019 Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + EK +AI+ +I+ MA ++ + +A+ + L GCD IQ Sbjct: 1020 IDQSFVRELAEKTSDMAIVTAIVRMAHSLHLSTLAEGVETAEQAALLHDCGCDEIQGYWY 1079 Query: 941 ASPLGFNSILKL 952 + PL + Sbjct: 1080 SRPLEPRAFEAF 1091 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 42/383 (10%), Positives = 99/383 (25%), Gaps = 38/383 (9%) Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273 R +L P ++ + + + + E I + +L++ ++ + Sbjct: 75 RDLVLGPGLLGVAILDMSHCLSYAGMPDFITPNGPEKAILFWLAARSLAALALLCAAFWP 134 Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSF--------------YYPMVTASIARITLASIV 319 R ++G +LF + + P V + +I + Sbjct: 135 Q--RHDNRLGPRARCWSLACVLLFVGAVHYVVLLHPQSVPPTFIPGVGLTKFKIDFEYGL 192 Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379 + + + + + + + + N + G L I+ Sbjct: 193 IAAYVLAGMGFLTHLRQDREFGLTRLALAAFTMAMGEFFFTLYANVTDIYNVTGHLYKIM 252 Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 V Q + + + + D++++ + ++ + A+ L Sbjct: 253 ACAFLYRGLFVETVQAPYQELQASEAQHRAMLDTLPDLLFELNRQGVYLSVHANDASKLA 312 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 +G + G L I + FR+ H + I Sbjct: 313 APAGQLLGRR---LGEILPAQAAAACLDALAEAERSGVARGQRFRLALPSG-VHHFELAI 368 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL----------- 548 +N G Y+ + DIT + I A N Sbjct: 369 ARKANPAGREDTYLTLVRDITATVHDEQRIAFEAR-------LNASLLDLQHSDVQELEA 421 Query: 549 DRLTTILDLSATDDNLRPTVMVI 571 D L + + V+ Sbjct: 422 DFLQRGIRHVERLTHSPFAVLHF 444 >gi|209525642|ref|ZP_03274180.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Arthrospira maxima CS-328] gi|209493975|gb|EDZ94292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Arthrospira maxima CS-328] Length = 612 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 139/535 (25%), Positives = 248/535 (46%), Gaps = 9/535 (1%) Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 V + G G L DR + + R Sbjct: 73 IVFVNKAFTRMTGYGPTEAIGRTPRILQG-EKTDRT-ILERMKLDLKDGGVFYGQTINYR 130 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D I P+ N I Y+ I D+TE++ ++ A D+LTG+ NR Sbjct: 131 -KDGSEFVNEWHIEPIYNDRQQITHYLAIQRDVTERQNQHNRLIYEANHDSLTGLYNRGY 189 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+ L +D + + ++ +D+D++K IND G GD +L+ + R+ ++ Sbjct: 190 FITELQKAIDRTQNCQDYLFGLLFMDVDRFKLINDSFGHQAGDQLLIEIGDRLQSCIRPQ 249 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV--TASIGFASWT 664 DIL+R G+ F II+ + +I+ ++++I PI L E + + SIG A + Sbjct: 250 DILSRWGGDEFAIIIDDIQDLSEISQLTNKIQQTIKKPIILGEDHLETVTSLSIGIALSS 309 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722 S++ML++A+ A+Y AK RG F + ++ ++ DL A++ EL L Sbjct: 310 MGYNCSADMLRDADTALYRAKDRGKGSYAIFTQAMHHRVRQQLQLETDLRYALKREELLL 369 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y PII + IVG E L++W+H G IS +F+ +AEE +I + +++E+ Sbjct: 370 NYQPIISMKTNRIVGCEVLLRWEHGTLGLISPEQFIPMAEETGLIVKMGDWVIEQACIQA 429 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W P F+ +N+++K L++ + E ++ ++ T SP I+ +E+ + + E Sbjct: 430 KQWECIYQDAPPFLSVNLSTKQLINQGIVEKIKEILEATKCSPELIRFELTETAIAESTE 489 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 + L +++ +GI L +DDFGT S LS L P DT+K + S + G +E + I Sbjct: 490 VAVTTLRKIKDLGIRLCIDDFGTGHSSLSRLSCFPIDTLKIDRSFIQGMSASEHQTKIAY 549 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +I+ +A+++ IA+ I +L GC+ Q +A P+ ++L + Sbjct: 550 AIVKLAQSLGMETIAEGIENLEQFCQLKSWGCELAQGFLMAQPIASKIFQEVLNQ 604 >gi|229031376|ref|ZP_04187378.1| Sensory box/GGDEF [Bacillus cereus AH1271] gi|228729941|gb|EEL80919.1| Sensory box/GGDEF [Bacillus cereus AH1271] Length = 591 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 146/589 (24%), Positives = 276/589 (46%), Gaps = 11/589 (1%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L L + V Y S+ + ++ D ++ D+ + Sbjct: 6 LTKRLQAFNAQLEEKVTLRTSDLVYKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNV 65 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 + +LG + + G I D+ + L+ LQ + D Sbjct: 66 NKAGSMLLGAPTDELLGETC--FSIILDEDKHKLASALEKVKQQESASLQLSSQY--KDG 121 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 +++ + I P+ +G I + DIT KK E I AF D +T I NR F + Sbjct: 122 FTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKK 180 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L ++ + T D+ ++ +D+D++K IND LG + GD +L + +R L L+ Sbjct: 181 LKRVIKNARTTDS-EFALLYLDLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLS 239 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 R+ G+ F I++ + + + + + + P + E +T++ SIG A + S I + Sbjct: 240 RIGGDEFTILIENYTDEDSLFQLCNRLFECMEKPFVIHEHTLTLSLSIGIAIYPHSGIDT 299 Query: 671 SEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728 + +LKNA +AMY AK + ++ R+ +++DL A++N EL+L+Y P + Sbjct: 300 ATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQPQV 359 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 +I+G EALI+W+HP+ G IS EF+ IAEE I I + LE+ + W Sbjct: 360 DSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLEQACEQMKRWHA- 418 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + I +N+++K+ + + + + ++ T S + L +E + M + + + L Sbjct: 419 LGYSHLKIGVNLSAKEFEQEDFVKSISSTLANTGLPASSLDLELTERIAMMDERETLIKL 478 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMA 906 L+ +GI +++DDFGT S L+YL P DT+K + + + + + I+++II +A Sbjct: 479 RTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLA 538 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++IA+ + + + L + C +IQ + + P+ N+ +LL+ Sbjct: 539 NTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHTNAFTELLES 587 >gi|197117046|ref|YP_002137473.1| diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] gi|197086406|gb|ACH37677.1| diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] Length = 742 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 139/637 (21%), Positives = 283/637 (44%), Gaps = 32/637 (5%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 A+ + + + ++ L ++ AL+GG ++ + A Sbjct: 107 RPVFALSFPVHDAGHEVALLEVSRSLQPVLIKTLL--ALIGGALVGAYAFFRLRTVPLRA 164 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR--------VTTTPDIATILGLASGS 444 + + E+ + + + R P + G + Sbjct: 165 LDEAYRVLKQSEEKYRSVYESLNEGLALYRASRREDGSADLVLTDVNPAAINVFGFSRDD 224 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G I L + + L + RG + + + + + + PM Sbjct: 225 IGGWITELLDGLFAECAEQVFGALQA-----RGEVSLDLE-QNSTGRIFSL--TAFPMG- 275 Query: 505 SNGDILRYIGIA-NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + D+TE+K++ E + A+ D+LTG+ NR+ LDR+ + + + Sbjct: 276 -----YGMVATLLEDVTEKKRTAEQLERLAYYDSLTGLLNRRMLLDRMEQAIGTAQR-EG 329 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ + +D++ +K IND LG GD +LV + +R+ ++++ D LARL G+ F + Sbjct: 330 VKVATLFMDLNGFKVINDTLGHKAGDQILVEVAKRLQKMVRKRDTLARLGGDEFVVAATF 389 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 E + + A + +I + +RE+ V S+G + + +LKNA++AMY+ Sbjct: 390 EKD-ENASAIAKNLINAITPVYQVCDREVYVGVSVGISIFPDDGDVPETLLKNADIAMYN 448 Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G + +++ +R+ ++ L AVE E +L Y PI+ I +EAL Sbjct: 449 AKSQGQGGFCFYSAQLNERLHERMQLEFKLRGAVEREEFFLEYQPILDSKTGRITAVEAL 508 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+ P+ G + F+ +AE+ +I + ++L + W+D + P+ + +NI+ Sbjct: 509 LRWNDPEKGRVMPDSFIPLAEDTGVILPLGEWVLRTACAKLRQWQDA-GVMPVRMAVNIS 567 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + +L + ++ + ++ PS ++L +E+ ++ N E + L RL+ + +S+++D Sbjct: 568 GRQFTQGDLSKTVEDALLQSGVHPSWLELELTETCLIKNVEETVRKLCRLKGLCVSISID 627 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L YL P D +K + + AI+ +II +AK ++ +IA+ + Sbjct: 628 DFGTGYSSLQYLKNFPIDHLKIDRGFINNVCELPDDRAIVDAIIGIAKAMDLHVIAEGVE 687 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L R GCD Q + PL +L++L + Sbjct: 688 TRQQAEHLMRRGCDEFQGYYFYRPLPEEKLLEVLASK 724 >gi|332529343|ref|ZP_08405304.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624] gi|332041141|gb|EGI77506.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624] Length = 772 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 152/732 (20%), Positives = 288/732 (39%), Gaps = 25/732 (3%) Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287 + L L +W +++ ++ Sbjct: 46 MTANFGSGVLTLWFFTPDVPFGLWVWMFALCTVCGLAMLNWVRR--RGRPVLTASSRSVH 103 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 +L + P + + + L ++ ++ G AW Sbjct: 104 RATVHALLLAAVWGVLPALWFEGSAVGLQLPLVALISGMLGAGSFVLSPLPYASVAWAAT 163 Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + L+ IV++ A + Sbjct: 164 ISLGSIWALLDVG-SAAAVSVGLLMSLYAPIVVIGSLVNWYKSTALLRAQAQSARQEQML 222 Query: 408 SLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 SL + +GD +W+ D + + +L L + G L + Sbjct: 223 SLLLQDFEQNAGDALWETDADGRLRHASQRLRELLCLP---LEGQEAEPLLALLSRRGIT 279 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 +L+ + R ++ H +++ +P+S+ NG L + G+ +D+TE+ Sbjct: 280 GAGLLEQQLNTGRPFRDLSLSIQDERGTVH-LLMNGKPLSDENGAFLGWRGVLSDVTEKV 338 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + E + A D+LTG+ NR D L ++ ++ ID+D++K +ND Sbjct: 339 RHEETLRRLAHTDSLTGLANRFMLRDTLNRLIAQKR-----PLALLAIDLDRFKAVNDNH 393 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G + GD VL ++ R+ L +LARL G+ F ++L + K A + ++A Sbjct: 394 GHSAGDAVLQAVAERLRAHLPTEALLARLGGDEFAVVLSEPADLPKADTLAQRVVDALAQ 453 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701 P+ + R + + AS+G + + ++ +L A++AMY AK G + Sbjct: 454 PVEIGSRSLRIGASVGLTTRHNEPVSLDGLLVQADMAMYAAKESGRGRWARYTPLLGEHS 513 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++ I++ L A+E EL L + + L I G EAL++W HP G IS EF+ +A Sbjct: 514 RRQLAIEQGLRNALERGELMLHWQAKLDLASARITGAEALMRWTHPTLGPISPGEFIPVA 573 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I A+ + L R + + +N++ LL + ++ ++ + Sbjct: 574 EQCGLIDAMGQWALREACRAGTQELA-----GLTVAVNVSPAQLLSGHFLDHLRETLAVS 628 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P R++L +ES+ M + E++ LL +R+ G+ L LDDFGT S LSYL PFDT+ Sbjct: 629 GLEPGRLELEITESLFMEDAEQALQLLRSIRQTGVHLALDDFGTGFSSLSYLRSFPFDTL 688 Query: 882 KFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S +T K AI+R I +A + + + + ++ + GCD +Q Sbjct: 689 KIDQSFVTELLSKDQSRAIVRMIAELAATLGMRTVTEGVETMEQMQAVRAAGCDEVQGYL 748 Query: 940 VASPLGFNSILK 951 ++ P + Sbjct: 749 ISRPRPLAEFQR 760 >gi|53804907|ref|YP_113464.1| sensory box protein [Methylococcus capsulatus str. Bath] gi|53758668|gb|AAU92959.1| sensory box protein [Methylococcus capsulatus str. Bath] Length = 976 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 140/602 (23%), Positives = 271/602 (45%), Gaps = 9/602 (1%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413 + +P V ++ + T + L + + + + V Sbjct: 370 SAGTAIGLIAVMHGEPMAEPESVTALLQLVATRVAAALERDRSERQLKAREQEFRSLVEH 429 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 S D V +D R+ P + G+ + G P ++ + Sbjct: 430 SPDTVARYDRDCRRIYANPRLVEEAGVPLSELLGKTPVEFPGG--ESSRAYQAKIRQVFE 487 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 ++E + A + IR+ P +G+++ + I DITE I A Sbjct: 488 T-GEPAEFELSWKTAQERELISHIRLTPEFGFDGEVMHALAIGRDITEIDAYRRRIHHLA 546 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 F D+LTG+PNR+ R+ ++D + + +M++D+D++K+IND LG +GD +L Sbjct: 547 FFDSLTGLPNREMLNKRIREVMDGNPR-PGRQFALMMLDLDRFKEINDTLGHGIGDLLLG 605 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 RR+ + D +ARL G+ F +++ + S ++ A + + A P + RE+ Sbjct: 606 RAARRLLGAVGKDDTVARLGGDEFAVLVPAPAASQELTALAGRILDAFARPFLIEGRELF 665 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDL 711 V+ S+G A + + + A+ AMYHAK +G N+ + + + ++R+ I+ L Sbjct: 666 VSVSLGIALYPRDCTGIDTLFRYADTAMYHAKRQGRNNFQFYSAELTARAAERMRIESAL 725 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+ +EL L + I ++ IVG EAL++W+ P G I +F+ IAEE +I I Sbjct: 726 RRALGRNELELHFQSQIDMVSGTIVGAEALLRWNRPGRGIILPRKFIPIAEETGLIVGIG 785 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 ++L + + +++W P+ + +N++++ + N+L +Q ++ +T P ++L Sbjct: 786 DWILAQACQAVVAWNRH-REQPLRVAVNLSTRQFILNDLAGTVQRILDETGCRPEWLELE 844 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +ES+++ + R L ++G+S+ +DDFGT S LSYL P +K + + G Sbjct: 845 ITESLLLEDSRGVRATLDAFDRMGLSIAIDDFGTGYSALSYLHRFPVKRIKIDRCFVHGI 904 Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 R ++++II +A+ + ++A+ + L GC Q P Sbjct: 905 PSDRCKSELVKAIISIAQALGLEVLAEGVETPRQAVYLQAHGCRLGQGYLFGEPQPLVGF 964 Query: 950 LK 951 Sbjct: 965 EA 966 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 6/155 (3%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGL 440 + + Q +R + + ++ + D + + ILGL Sbjct: 115 REAEARMKELERLQAEREGLDRLARFAQCAPGFMYTVEARADGRLVMTYASSGVEDILGL 174 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + ++ I + I DRD E+R+ W+ R Sbjct: 175 SVEAVLADIGHVHSRIVPEDRDRVMRC-KEASARELQPFTEEYRILHPVKGERWLEARSV 233 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 P +G I + G DITE+K+ E + A + Sbjct: 234 PERQKDG-ITLWHGFLIDITERKRMEETLQFIAQR 267 Score = 37.6 bits (86), Expect = 9.9, Method: Composition-based stats. Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 6/107 (5%) Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + G+ ++ + D ++ R L+ + + RV Sbjct: 24 RIIYANEAACRHFGVGLETLLTWCPLDFDPTY--DEESLRLALERHRQTGGTKFETLHRV 81 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 A + + + +G +L + I+ DI ++++ + Sbjct: 82 --AAGMEIPVEVTAN-LFEQDGRLL-AVCISRDIRPRREAEARMKEL 124 >gi|330822768|ref|YP_004386071.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|329308140|gb|AEB82555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicycliphilus denitrificans K601] Length = 1100 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 149/552 (26%), Positives = 266/552 (48%), Gaps = 12/552 (2%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464 R S A+ S V D+ + + + + G ++ + G L + R + Sbjct: 547 RLSEALEQSPHQVVITDVRANVLYVNRAFSEVSGYSAQEILGKNPRMLQSGLTP--RSVY 604 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + Q E R + + I+ + P+ + +G + Y+ DIT Q++ Sbjct: 605 EEMWRRLPQGQ--PWQGELVNRRKNGHIYTEIVSLYPIRDLSGQVTHYVAHKEDITVQRE 662 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + E I + D LTG+ N++SF +RL ++ + R +++ D+D +K IN+ LG Sbjct: 663 AEERIQALSNFDTLTGLLNKKSFDERLALAIERAGASHG-RLSMLWFDLDNFKLINESLG 721 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD++LV R+ L + LAR SG+ F I+ + + +A A + + Sbjct: 722 HTAGDELLVEAANRLRSCLGTQNALARYSGDAFVAIVP-QADQASVALMAQEALRLLQTA 780 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 ++ ++V+AS G A + T+ + AELAMY K G N + F + Sbjct: 781 TSVQGHPVSVSASAGVAVYPDDARTAGTLASAAELAMYRVKEDGRNGLRFFAPEMQAHTQ 840 Query: 705 VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ L A EL+LVY P L +VG EAL++W HP+WG +S +EF+ IAE Sbjct: 841 RSLELAAGLKDAARKGELFLVYQPQRALGSGALVGAEALLRWRHPQWGLVSPAEFIPIAE 900 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + I AI+ +++E+ A+ + +W D A +PP+ + +N+++ +L E + ++ + Sbjct: 901 QSGAITAIDFWVVEQAAQQLRAW-DAAGLPPLVVAVNVSAAQFARPQLAEELLHILQRVD 959 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 SP RI++ +E+V + +PE + + RL +G + LDDFGT S +SYL D +K Sbjct: 960 VSPQRIEVELTEAVALKHPELAETTIRRLHDMGFKVALDDFGTGYSSMSYLKRYTIDKLK 1019 Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + EK +AI+ +I+ MA ++ + +A+ + L GCD IQ Sbjct: 1020 IDQSFVRELAEKTSDMAIVTAIVRMAHSLHLSTLAEGVETAEQAALLHDCGCDEIQGYWY 1079 Query: 941 ASPLGFNSILKL 952 + PL + Sbjct: 1080 SRPLEPRAFEAF 1091 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 42/383 (10%), Positives = 99/383 (25%), Gaps = 38/383 (9%) Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273 R +L P ++ + + + + E I + +L++ ++ + Sbjct: 75 RDLVLGPGLLGVAILDMSHCLSYAGMPDFITPNGPEKAILFWLAARSLAALALLCAAFWP 134 Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSF--------------YYPMVTASIARITLASIV 319 R ++G +LF + + P V + +I + Sbjct: 135 Q--RHDNRLGPRARCWSLACVLLFVGAVHYVVLLHPQSVPPTFIPDVGLTKFKIDFEYGL 192 Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379 + + + + + + + + N + G L I+ Sbjct: 193 IAAYVLAGMGFLTHLRQDREFGLTRLALAAFTMAMGEFFFTLYANVTDIYNVTGHLYKIM 252 Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 V Q + + + + D++++ + ++ + A+ L Sbjct: 253 ACAFLYRGLFVETVQAPYQELQASEAQHRAMLDTLPDLLFELNRQGVYLSVHANDASKLA 312 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 +G + G L I + FR+ H + I Sbjct: 313 APAGQLLGRR---LGEILPAQAAAACLDALAEAERSGVARGQRFRLALPSG-VHHFELAI 368 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL----------- 548 +N G Y+ + DIT + I A N Sbjct: 369 ARKANPAGREDTYLTLVRDITATVHDEQRIAFEAR-------LNASLLDLQHSDVQELEA 421 Query: 549 DRLTTILDLSATDDNLRPTVMVI 571 D L + + V+ Sbjct: 422 DFLQRGIRHVERLTHSPFAVLHF 444 >gi|228933822|ref|ZP_04096668.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825894|gb|EEM71681.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 803 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 159/755 (21%), Positives = 308/755 (40%), Gaps = 22/755 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 56 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 111 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 112 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 170 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + + L L + + Sbjct: 171 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 230 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q S + + ER D + D + + +LG S Sbjct: 231 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQSGSILLGKDSA 290 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502 ++ G D+ T L +G R + RV+ + + + I P+ Sbjct: 291 ALIGKEC--FSIFLDEDKPELETALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 346 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G + DIT+ K+ + I AF D +T I NR F L ++ + Sbjct: 347 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 405 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID++++K IND +G ++GD VL + +R L LAR+ G+ F +++ Sbjct: 406 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 464 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 465 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 523 Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + +++G EA Sbjct: 524 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 583 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G IS EF+ IAEE I +I + L+ R + W + + IN+ Sbjct: 584 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKMGINL 642 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + + + ++I + + I L +E + M + + + L L+ G+ L++ Sbjct: 643 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 702 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P DT+K + + I+++II +A + +IA+ + Sbjct: 703 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 762 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C IQ + + P ++ + L Sbjct: 763 ETKEQLTVLQQNACYLIQGYYYSKPANEDAFINFL 797 >gi|167839921|ref|ZP_02466605.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Burkholderia thailandensis MSMB43] Length = 709 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 134/609 (22%), Positives = 258/609 (42%), Gaps = 17/609 (2%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412 A + + +P + L V + + S R Sbjct: 102 VAGFAAGGI--DYLTKPFQIVELAARVKTHLALRAAQR-QLVLANARLASSEARYRRLFE 158 Query: 413 GSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + D + D+ R+T + +LG G + + + L + Sbjct: 159 TASDGIILVDMAGSRITDVNASLVEMLGFERDHFVGRP---IGSVPPFEAVPECASLCAT 215 Query: 472 VGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + G ++ E + A + + I++ DITE+K++ + Sbjct: 216 LAA-SGEIRCEHTSLATATGTLLDVEFLASLYTVGGARIVQC--NVRDITERKQAEARVR 272 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D LTG+PNR + L + + + +M +D+D++K +ND LG +GD Sbjct: 273 YMALHDALTGLPNRALLQEHLAQAIARARREGGCVAALM-LDLDRFKHVNDSLGHHIGDR 331 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L + + R+ L+ D +ARL G+ F I L + + A + +++ P + Sbjct: 332 LLEAASMRLRGCLREGDTVARLGGDEFVIGLADVDGDQGAGEVATRVLTTLSRPFFVENH 391 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIK 708 E+ V SIG + + + +L+ A+ AMY AK G F ++ R+ + Sbjct: 392 ELHVGCSIGISRYPADGEDVQTLLRAADTAMYDAKANGRGIYRFFTPELNAAAQQRLALA 451 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 D+ A + E L Y P + I G+EAL++W HP+ G IS +F+ + EEL +I Sbjct: 452 RDIRYAFDRGEFVLHYQPQVCTHSGAITGVEALLRWRHPEHGLISPLQFVPMLEELGLIV 511 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 A+ ++L + + W+ PP+ + +N+++ L ++ + + +T + + Sbjct: 512 AVGQWVLRTACQQSVQWQSAGL-PPVRMAVNLSAYQLQRGDIVRTVDEALRETGLAAEWL 570 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +E++ + N + + ++ +++G+SL+LDDFGT S LSYL P D +K + S + Sbjct: 571 ELELTETMALYNAQEAIRIMREFKQLGVSLSLDDFGTGWSSLSYLRQFPIDRIKIDRSFI 630 Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + A+++ I+ +A ++ IA+ + L C IQ V+ L Sbjct: 631 RDVVTHPGASAVVQGIMTLANHLGLQCIAEGVETVQQFGFLQERACGEIQGFLVSPALPA 690 Query: 947 NSILKLLKE 955 + LL Sbjct: 691 HECAVLLAS 699 >gi|26987890|ref|NP_743315.1| sensory box protein [Pseudomonas putida KT2440] gi|24982596|gb|AAN66779.1|AE016306_5 sensory box protein [Pseudomonas putida KT2440] Length = 861 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 147/621 (23%), Positives = 278/621 (44%), Gaps = 15/621 (2%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 W LW + L +I ++ L + + ++ +Q Sbjct: 242 YHLTWNSPLPGQQMLWAVLPALLCALLILGLVMLYLFRHALRSSRAIGLTLVHLQQSNQA 301 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + +R + D +W+ D + + A + G G N L Sbjct: 302 LEASEQRFRAVAESASDWIWETDRQQRLTYLSQRFANVTGYPVDGWLGHPLNQLLACDTT 361 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + L + + L+ +R + Q + I R + +G + + G A+DI Sbjct: 362 PLSPWLDALTAAEPQQLANLRCTYR--DQNGQNRYCRISARAIW-RDGKAIGFRGTASDI 418 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T++ + I + D LTG+ NR L L + L ++D+D +K I Sbjct: 419 TDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGSDSPPLTLL--LLDLDNFKPI 476 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A GD VL + R+ + + D++ARL G+ F ++L +NS +I F + Sbjct: 477 NDSLGHAAGDAVLQEVATRLRDTTRDGDLVARLGGDEFILVLSGMDNSSEIDRFCARLIG 536 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697 + PI + + + ASIG A + + E+++ A++A+Y AK G N F + Sbjct: 537 LLQQPIVFENQPLHIGASIGVAQTRNQGFDAGELIRCADIALYQAKADGKNTWRYFVAEM 596 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + R ++ DL A+ N E L Y P RL D IV +EAL++W HP+ G ++ F Sbjct: 597 NQQIQYRRQLENDLRRALRNEEFELHYQPRYRLDDLRIVAVEALVRWRHPQEGLLAPDTF 656 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+ +I A+ ++L R W + + +N++ L +++ ++ Sbjct: 657 IPLAEQSDIIVALGRWVLREACRTAHDWPA-----DVLVSVNLSPAQFLRSDVVADVRET 711 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + T + R++L +E+V++ + E + + L+++G+ L +DDFGT S L YL P Sbjct: 712 LLDTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLRTYP 771 Query: 878 FDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 FD++K + ++G A++++II + + + T+ A+ + E +K L + C Sbjct: 772 FDSIKIDKRFISGLNNNGGSDRAVVQAIINLGEAMGLTVTAEGVESEHQLKSLEKDRCHE 831 Query: 935 IQDSHVASPLGFNSILKLLKE 955 +Q +++ PL + LL + Sbjct: 832 VQGYYLSKPLDSAGLTALLHQ 852 >gi|304310878|ref|YP_003810476.1| hypothetical protein HDN1F_12400 [gamma proteobacterium HdN1] gi|301796611|emb|CBL44823.1| Hypothetical protein HDN1F_12400 [gamma proteobacterium HdN1] Length = 636 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 142/580 (24%), Positives = 263/580 (45%), Gaps = 18/580 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 ++ S + + AV + V+ D P T+ Sbjct: 23 TARLLVQAGQAVPEKAARPSQDQLLADAVFDAISEGVFIADREGFIEKANPAFLTLTQYK 82 Query: 442 SGSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 S + G R W ++ N R +D+ + + V + + + Sbjct: 83 SEQIIGQHCSRLWEEHLSSGIFKNMRKGVDA-----ESSWRMDTTVVCNHGRVRPATLSV 137 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + G + YIGI D E+++S + I A+ D+LT IPNR SF +RL L + Sbjct: 138 TAIRDLAGQVTHYIGILLDTAERRQSEQRIYRLAYYDSLTEIPNRVSFFERLDQALASAG 197 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 V+ +D+D++K IND LG GD +L ++ RR+ ++ D++AR+ G+ F I Sbjct: 198 -STGTSLAVLFLDLDRFKPINDSLGHGAGDQLLKAVARRLLYCIRENDLVARVGGDEFAI 256 Query: 620 ILISENNSLKIADFAI----AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 +L N + AI + A + R++ + SIG A + E+++ Sbjct: 257 LLTRLNTPEEAESTAIITASRILAQFATAFMIEGRDVFSSTSIGIALFPRDGQLPDELVR 316 Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 NA++AMY AK G N + S +R++++ + A+ NSE L + P Sbjct: 317 NADMAMYAAKKAGKNAWHFYDHSMNEKAMERLVMENAMRKALNNSEFELYFQPQCEADSG 376 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 + GLE L++W HP++G + +EF+ +AEE +I I ++ E+ + W Q P Sbjct: 377 ALAGLEVLLRWQHPQFGIQTPAEFLALAEETDLINPIGEWVFEKALGTLEDWLSQGFDPG 436 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 ++ INI+S + +Q L+ + PS I+L +E +M + RS+ +L L Sbjct: 437 -YLAINISSTQFKRTNFADYLQILLRRHEMDPSYIQLEITEHAIMEDVARSQKILDTLSD 495 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 GI + +DDFG S L++L P T+K + + A+ ++I + K++ Sbjct: 496 AGIRIAIDDFGVGYSSLNHLRRFPVHTLKIDRDFVRDLELEGGTQALTNAVIAIGKSLNL 555 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++IA+ + ++ L GC +Q ++++P+ ++++ Sbjct: 556 SVIAEGVETAGQLEYLRTHGCRRVQGHYLSAPMNAAAVME 595 >gi|241665425|ref|YP_002983784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] gi|240867452|gb|ACS65112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12D] Length = 902 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 149/595 (25%), Positives = 253/595 (42%), Gaps = 13/595 (2%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRD 426 I + ++ L + D R + L S + + + Sbjct: 308 AYRRTALAGAIGSTLLMALLYATLRRSMSQRKQHIDEMRLASLVYASSSEAMMVTTLDGT 367 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + P G + G + + + + + V + G E+ +R Sbjct: 368 VIDVNPAFTVTTGYTAQEFKGQHSDAIRSECND--SAVVDTMRTAVTTK-GTWSGEYLIR 424 Query: 487 AADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 D ++ + + G R + + +DITE+K++ E I A D LT +PNR Sbjct: 425 RKDGTEFPALLTVDTFAGHKLGAPSR-VALIHDITEKKRAEEVIWRQANFDTLTELPNRH 483 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F +L + + ++ ID+D++K++ND LG GD +L + RRI +++ Sbjct: 484 MFYAKLRQEILHARQAATA-VALLFIDLDRFKEVNDTLGHDQGDVLLKEIARRISAIVRG 542 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D +ARL G+ F IIL + ++ A ++ IA P+ L E + VTASIG A + Sbjct: 543 TDTVARLGGDEFTIILPNLPDAGAAAPIIRSLLARIATPVQLGEESVEVTASIGLALYPR 602 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723 + +L A+ AM+ AK G N F + R +R+ I DL +A+E +L + Sbjct: 603 DADNAESLLVRADQAMFAAKSAGRNQWSVFTPALQRAEQERLRITSDLRIAIEQKQLAVH 662 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI+ L I EALI+W HP G I ++F+ +AEE +I I ++L ++ Sbjct: 663 YQPIVDLRSGAINKAEALIRWTHPVRGEIEPADFIPVAEETGLIVQIGKWVLNEALTEVT 722 Query: 784 SWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W + + +N + + L + ++ + P + + +E +M Sbjct: 723 RWHTVLGRH-MQVSVNKSPVEFRAAGQLGDSWADVVKRRAIRPGSLVIEITEGALMEGSA 781 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L RLR+ GI + LDDFGT S LSYL D +K + S + K IA+ Sbjct: 782 EVVDHLTRLRQAGIEIALDDFGTGYSSLSYLKRFDIDYIKIDQSFVRSLAHDPKDIALCS 841 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +I+ MA + +IA+ I E L GCDY Q P+ + + + Sbjct: 842 AIVSMAHALRIKVIAEGIETEEQKAILVAAGCDYGQGHLFCPPVPPAAFEAFVAK 896 >gi|308188095|ref|YP_003932226.1| Heme-regulated cyclic AMP phosphodiesterase [Pantoea vagans C9-1] gi|308058605|gb|ADO10777.1| Heme-regulated cyclic AMP phosphodiesterase [Pantoea vagans C9-1] Length = 949 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 144/571 (25%), Positives = 261/571 (45%), Gaps = 23/571 (4%) Query: 388 QHVLATGYFSQGIFSDGERQSL------AVLGSGDIVWDWDIVRDRVT-TTPDIATILGL 440 Q +L ++ ++ +L + V D + + + GL Sbjct: 384 QQILRARDLAEA--QSTQKTALSKFLDNIIANIPSCVIVEDAITREILLVNDRTQQLFGL 441 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + + + D F + D + G + E + A + + R Sbjct: 442 SKALIVNKRPH--ECMSPELSDYFNNLADVALRSE-GMHEREQLLMTASGERI-LHTRAT 497 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 ++ + + + D+T+Q+ + I A DNLT +PNR F RL+ L + Sbjct: 498 AINGQDARRNYLMLLVEDVTDQRAADARIHHMAHHDNLTSLPNRILFRQRLSEALRTANQ 557 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + +D+D +K +ND LG +GD++L S+ +R+ L+ D LAR+ G+ F I+ Sbjct: 558 TQRQTAALC-LDLDNFKNVNDALGHQIGDELLRSVAKRLRNTLRDQDTLARIGGDEFAIV 616 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L S NS + + A + ++I P+N+ ++V S+G A T+ T ++L+ A++A Sbjct: 617 LPSVANSEEASIVAQRLIEAIRPPVNVEGHNLSVGLSVGIALSTTITNTPEQLLRCADMA 676 Query: 681 MYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N E F + R +I+ DL A+ L L Y PI I+G Sbjct: 677 LYEAKRNGRNRYEHFTLEMDDVARSRRLIENDLRDAISGGHLRLYYQPITNGDHRTIIGY 736 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP G I ++F+ IAEE +I + F L R+ SW + + + Sbjct: 737 EALMRWHHPIRGLIMPNDFIPIAEETGLIHMLGAFALYEACREAASWEGEQ-----SVSV 791 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ ++ L ++ + ++ P+R+++ +ESV++ + + L L+ +G+ + Sbjct: 792 NLSPLQFKNSSLVPVVEGALKESGLDPARLEVEITESVLLDDSLGNIRTLQNLKALGVQI 851 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916 LDDFGT S LSYL PFD +K + S + + R AI+R+I M+++++ I A+ Sbjct: 852 ALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMGDSREALAIIRAITGMSRSLDIQITAE 911 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 + + +L GC Q P Sbjct: 912 GVESDEQFAKLRDEGCTLFQGFLFGRPQPSE 942 Score = 68.8 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 4/154 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATIL 438 LIGFT + Q + E R L V G D ++ D + V Sbjct: 110 LIGFTAVCRDCTRQQEQQRKEREQEMRFRLLVEGVTDYAIYMLDQDGNVVNWNAGAQRAK 169 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + + G ++ + DR N + YR GR + E D W + Sbjct: 170 GYVAEEIVGQ--HFSRFYSAQDRLNHIPSQNLQTAYRTGRFEDEGWRYRKDGSAFWAHVV 227 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 I + + G +L Y I D TEQ++ Sbjct: 228 IDTIRDDQGKLLGYAKITRDCTEQQRVRSEQREQ 261 Score = 65.7 bits (159), Expect = 4e-08, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 3/131 (2%) Query: 401 FSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 +R L V G D ++ D+ V G + + G + Sbjct: 259 REQEQRFRLLVEGVTDYAIYMLDVDGVVVNWNAGAQRAKGYKAEEVVGQHFSLF--YSAQ 316 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 +R N + + + GR + E D W + I + + +G ++ + I D Sbjct: 317 ERLNRTPEANLGIALKTGRFEDEGWRYRKDGSAFWAHVVIDAIHDDDGKLIGFAKITRDR 376 Query: 520 TEQKKSLEGIL 530 TE ++ + IL Sbjct: 377 TEGREQEQQIL 387 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 2/110 (1%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + +LG + G + DR + + + GR + E Sbjct: 26 PDGTVASWNGGGLHVLGYRPDEIIGQHAALF--YNDEDRRRGQPQRELDIAVTTGRYENE 83 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 D W + I P+ + ++ + + D T Q++ Sbjct: 84 GWRCRKDGSSFWAHVVIYPIRDETAQLIGFTAVCRDCTRQQEQQRKEREQ 133 >gi|229174407|ref|ZP_04301939.1| Sensory box/GGDEF [Bacillus cereus MM3] gi|228608967|gb|EEK66257.1| Sensory box/GGDEF [Bacillus cereus MM3] Length = 800 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 155/711 (21%), Positives = 307/711 (43%), Gaps = 47/711 (6%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA------ 337 + I + ++ Y + +A T+ + L Y I++ + G A Sbjct: 92 RKIYIFIFVLISSATFNYIYFYLNNHLATETITLLRLLYRIPILFIAIAGSISADRNSHK 151 Query: 338 VLLI---------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 I I + + ++ + + + ++I +Q Sbjct: 152 NYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQ 211 Query: 389 ---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 + S+ + ++ D ++ D+ Sbjct: 212 NNSLTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLHGVF 271 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + + +LG + + G I D+ + L+ LQ + Sbjct: 272 LNVNQAGSILLGAPTDELLGETC--FSIILDEDKHKLTSALEKVKQQESAYLQLS--SKY 327 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D +++ + I P+ +G I + DIT KK E I AF D +T I NR F Sbjct: 328 KDGFTYFLYVTIVPII-IDGQISGSYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFF 386 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +L ++ + T D+ ++ +D+D++K IND LG + GD +L + +R L Sbjct: 387 HKKLKRVIKNAKTTDS-EFALLYLDLDRFKAINDTLGHSAGDHILEEVAKRFQSCLPSHT 445 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 L+R+ G+ F I++ + + + + + +SI P L E +T++ SIG A + S Sbjct: 446 HLSRIGGDEFTILIENYTDEDSLFELCSQLFESIEKPFVLHEHTLTLSLSIGIAIYPHSG 505 Query: 668 ITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725 I + +LKNA +AMY AK + ++ R+ +++DL A++N EL+++Y Sbjct: 506 IDITTLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNKELFILYQ 565 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + +I+G EALI+W+HP+ G IS EF+ IAEE I I + L++ + W Sbjct: 566 PQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRW 625 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + I +N+++K+ + + + + ++ T S + L +E + M + + Sbjct: 626 HA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLANTGLPASSLDLELTERIAMMDERETL 684 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSII 903 + L L+ +GI +++DDFGT S L+YL P DT+K + + + + + I+++II Sbjct: 685 IKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTII 744 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +A + ++IA+ + + + L + C +IQ + + P+ ++ +LL+ Sbjct: 745 TLANTLGMSVIAEGVETKEHVNFLQKNNCQFIQGYYYSKPIHTHAFTELLE 795 >gi|144900265|emb|CAM77129.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 1036 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 134/572 (23%), Positives = 248/572 (43%), Gaps = 16/572 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + + R + D + D V+ + I G + G Sbjct: 455 RDTTEVTAAMRAVAAREHRIRAIMDTVLDGIVTIDEDGLIVSANLSVERIFGYPLSELIG 514 Query: 448 PIRNWLPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + D++ G E R D + + + + Sbjct: 515 AN---VSILMPEPDAGRHDSYIKNYLQGQGGGLIGSGREVMARRKDGSLFPVHLSVSELR 571 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + G D+TE K+ + + A D+LT +PNR DRL L +A Sbjct: 572 LDKRRL--FTGTIRDLTENKQLAQRVAYLANHDSLTDLPNRTLLCDRLGQALA-AARGTG 628 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILI 622 VM ID+ + IND LG VG+ VL RR+ + + ARL+G+ F +IL Sbjct: 629 QHVAVMTIDLAGFTMINDSLGHDVGNGVLRETARRLAQWVSLHNGTAARLAGDEFAVILP 688 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ + + + P+ + ++ + IG + + ++L+NAE+A++ Sbjct: 689 GLRDLAGVSAGTEQVLEMLNRPMTVGGSDLALPVDIGVSVFPRDGDEPLDLLRNAEMALH 748 Query: 683 HAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 K R +S S+R+ ++ L A++ + L Y P +RL D ++G EA Sbjct: 749 QVKKREDQRLGFFDTAMSYAVSERLTLERSLKEALKAGQFELFYQPQVRLSDYALIGAEA 808 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G I+ +F+ +AEE +I + ++LE+ R + W+ Q + + +NI Sbjct: 809 LIRWRHPELGTIAPDKFIPVAEETGLIVPLGRWVLEQACRQLNLWQHQGL-TQVRMGVNI 867 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + + +L E + +I + + L +ES++M + E + +L RL +G++L++ Sbjct: 868 SGRQFREVDLAETVAEVIRGSGIDARLLDLELTESMLMADGESTLRVLRRLADLGVTLSI 927 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P TVK + + + E I ++I+ +A ++ IA+ + Sbjct: 928 DDFGTGYSSLAYLKRFPVHTVKIDRAFVRDLDHDEDGRTIAKAIVSLAHSLNLKTIAEGV 987 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 E L GCD IQ + P+ Sbjct: 988 ETEAQASLLLHHGCDEIQGYLIGRPMPVADFA 1019 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 9/147 (6%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 L + + VI+H + + + + S D+ D +T A Sbjct: 119 LAGLDMLPRVIRHAIERQQSRTALELSHQTAQALLDASHDMAMLLDEDGHVITLNAQAAE 178 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G S + G + + + D R + R + D W Sbjct: 179 AFGRRSEELEG--MDVFTLMPPDLADRRRAFFAKALESGRT-----IQSEDNDG-PRWFT 230 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQK 523 R + + G R + DI+ ++ Sbjct: 231 HRFLAV-GAEGAARRCAIFSRDISGER 256 >gi|121610171|ref|YP_997978.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Verminephrobacter eiseniae EF01-2] gi|121554811|gb|ABM58960.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Verminephrobacter eiseniae EF01-2] Length = 851 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 139/600 (23%), Positives = 265/600 (44%), Gaps = 17/600 (2%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----D 422 ++ L L + + V+Q V ++ + ++++ D Sbjct: 252 MRTRLQRTLPRDGVRVVMGVVQDVTDEHRAAEQLREQLLFIQRIASRIPGFIYEFRLHSD 311 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + + +G+ + + + DR R + V + Q E Sbjct: 312 GATSVQYISDAVREFMGVEPREVTADHGVLMLRVLAQDRPQVRRSAITSVR-KLVPWQCE 370 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 +RV +D W + P +G ++ + G DIT++K + + I AF D LTG+P Sbjct: 371 YRVCMSDGSVRWHMTNAIPHREPDGSVVSH-GFTMDITDRKLAEQEIERLAFYDALTGLP 429 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR+ LDRL + L ++ ID+D +K +ND LG +GD +L + R+ Sbjct: 430 NRRLLLDRLQRSIATCQRTHKL-GALLFIDLDNFKDLNDTLGHDMGDQLLAQVATRLVAS 488 Query: 603 LKFPDILARLSGNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 ++ D +AR G+ F ++L + + + + A + S+ P L + T S Sbjct: 489 VRAADTVARFGGDEFVVMLEALAPDLRSATAQAEMVADKLLASLNQPFALDGGQHYSTLS 548 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG + +++ E+LK A+LA+Y AK G N F + ++ DL + Sbjct: 549 IGVTLFGEQRLSVDELLKRADLALYQAKAAGRNTQRFFDPDMQAAVNARSNLEADLRQGL 608 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 +EL + Y P++ ++G EAL++W HP+ G I ++F+ +AE+ +I + ++L Sbjct: 609 ARAELLVYYQPVVDHQA-RLMGAEALVRWRHPQRGMIGPADFIPLAEQTGLILPLGQYVL 667 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + + W + + I +N++++ + + P R+KL +ES Sbjct: 668 QTACAQLQRWSRHPDTAGLSISVNVSARQFRQPGFVAQVLHQLKSHGADPRRLKLELTES 727 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STE 893 +++G+ E + + +L+ G+ LDDFGT S LSYL +P D +K + S + + Sbjct: 728 LLLGDIEDTIARMAQLKSEGVGFALDDFGTGYSSLSYLKRLPLDQIKIDQSFVREVLADP 787 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+R+I+ +AK+++ ++A+ + + L GC+ Q P I L Sbjct: 788 NDAAIVRTILALAKSLDLQVVAEGVETTGQLSFLQLHGCEGFQGYLFGRPGPVADIDAFL 847 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 13/193 (6%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 P +L+ +A + ++ A + + ++ V +F Sbjct: 107 PGRLLLAWDLTARRVARDGIMVT--VRDASEAETLRTALAASERSLEEVRRDLREQTEVF 164 Query: 402 SDGERQSLAVLGSGDIVWDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 E + A W D + +P + I G P R + I Sbjct: 165 DTMESLARA------GHWRRIEDPGETVLLWSPGLCAIAGFEQQEWVDPERA-VSGILPE 217 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 DR FR + + RG L E+R R D Q WM R++ +G + +G+ D+ Sbjct: 218 DRHVFRQLRERDGRGERG-LDAEYRWRRPDGQVRWMRTRLQRTLPRDG-VRVVMGVVQDV 275 Query: 520 TEQKKSLEGILCN 532 T++ ++ E + Sbjct: 276 TDEHRAAEQLREQ 288 >gi|34498715|ref|NP_902930.1| hypothetical protein CV_3260 [Chromobacterium violaceum ATCC 12472] gi|34104566|gb|AAQ60924.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 825 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 138/583 (23%), Positives = 243/583 (41%), Gaps = 23/583 (3%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 I VL + + + + + + D R V+ P G + Sbjct: 238 RRIVGVLQDITGQRRTEERLRQAATVFDSTAEGIAILDARRKVVSVNPAFTQQTGYSPEE 297 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVG-------YRRGRLQYEFRVRAADNQFHWMII 497 D D ++F+ R Q + + + Sbjct: 298 AMAWP----------DIDPLYQTPNNFIQPSSPASPEERKLWQGNVNYLHKNGKVLNIWE 347 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 I + +G + Y+ + +DI+ + E + A D LT + NR+ DR+ L Sbjct: 348 SISIVPGPDGGVANYVLVFSDISSVLAAQEQLDYLAKHDPLTNLCNRRMLQDRMEYELAQ 407 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + V++ID+D +K IND LG GD +L ++ R+ ++ D +ARL G+ F Sbjct: 408 AMRRQKM-MAVLLIDLDHFKTINDSLGHGHGDQLLATIATRLQGSVRASDTVARLGGDEF 466 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L + + + + +A P+ L + VT SIG + + + E+L+NA Sbjct: 467 CIVLGDIESPGDVDLMGQKLLQRLAEPVRLEQMVCYVTGSIGISMAPTDGMGVDELLRNA 526 Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY AKH G N F + R+ I L LA+E + L + PI+ L I Sbjct: 527 DQAMYGAKHAGRNRYCFFAPAMQKAAEVRLQISSGLHLALEQGQFRLEFQPIVDLSCGRI 586 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 EAL++W HP+ G I+ + F+ IAEE +I I ++ ++ I +WRD + Sbjct: 587 RKAEALLRWHHPQHGVINPAVFIPIAEECGLIAKICEWVYDQALDFIRAWRDMLRD-DLR 645 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 I IN+++ D +++ + L +ES+++ + + L R G Sbjct: 646 IAINVSALHFRDLRNPVRWLDKLTRAGVPGEALMLEITESLLLDADHKVQEALDLYRAAG 705 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913 I + LDDFGT S LSYL D +K + + + + A+ +I+ MA + + Sbjct: 706 IQIALDDFGTGYSALSYLKRYRLDYLKIDQAFVGQIAEEPRDHALCEAIVVMAHKLGLNV 765 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 IA+ + L C++ Q + PL ++LL+ Sbjct: 766 IAEGVETPAQAAILQACRCEHAQGFLYSRPLPAERFVELLRSH 808 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 14/160 (8%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-- 442 +Q + + R A+ + VW+W + D++ + ++ G Sbjct: 114 ATLQMAMVRFGIQRRADEQLGRMGKAMQAAELDVWEWRVETDQM----QMFSLTGSEPLA 169 Query: 443 GSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRI 499 + G IR+++ + D + + + L +FR R A+ W+ R Sbjct: 170 SGLAGNESIRHFIEQVDARDAAAVSDAISLARDHGQA-LDIQFRARTGAEQDERWLRARA 228 Query: 500 RPMSNSNGDI-LRYIGIANDITEQKKSLEGILCNAF-QDN 537 R +G+ R +G+ DIT Q+++ E + A D+ Sbjct: 229 RCF--DDGEPGRRIVGVLQDITGQRRTEERLRQAATVFDS 266 >gi|291483871|dbj|BAI84946.1| hypothetical protein BSNT_02256 [Bacillus subtilis subsp. natto BEST195] Length = 749 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 151/765 (19%), Positives = 295/765 (38%), Gaps = 61/765 (7%) Query: 234 IDFGFLSKLV------NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287 + FG S ++ + +S F+ +Y +R + Sbjct: 1 MGFGIWSMHFVGMMAVHMEMPMTYEFMPLMAAIGASVSGSFVSLYF-VSRNILTYYRLLT 59 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY-----------HGMKGYER 336 + A + M + + + I + I +K + Sbjct: 60 GSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFVSLKIFFDLAVKKHSE 119 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDII---------QPALVGGLVLIVILIGFTVI 387 ++ I + M T L + V LI F + Sbjct: 120 HLIFYKVVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQTFHWSIFVTLIIFCIQ 179 Query: 388 QHVLATGYFSQGIFSDGER--------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-- 437 +L + + + ER QSL V D ++ + D +++ + Sbjct: 180 TLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNI-DAIFILSLEGDIISSNHAGEEMIS 238 Query: 438 -LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G + + + + ++ + + + Q + Sbjct: 239 KFGFSMHDWRNYTSL-----------KVKRLFEQVKKDKQA-MNSDSDLITEKGQ-FHLN 285 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 I + P+ N ++ I D+T+Q K+ + I A D+LT +PNR+ + LT +L+ Sbjct: 286 ITLIPV-EVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDLPNRRHAISHLTKVLN 344 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + V +D++++K IND LG VGD +L +R+ ++ +ARL G+ Sbjct: 345 R-EHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSSVVPDNGFIARLGGDE 403 Query: 617 FGIILIS-ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F IIL + + A + + P + + + + SIG A E++K Sbjct: 404 FIIILTDANTGTGEADVLARKIIQKFKKPFKIQDHTLVTSVSIGIAISPKDGTDGLELMK 463 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDE 733 A++AMY AK R + + S + V + ++ L A+EN L Y P + + Sbjct: 464 KADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIENDRFVLHYQPQFSVKKQ 523 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 ++ G EALI+ P EF+ +AEE +I I ++++ + W ++ Sbjct: 524 KMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACKQARIWHNKGYD-- 581 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + INI+++ +L ++ ++K P +++ +ES+ M N + S+ +L L++ Sbjct: 582 LSVAINISARQFQSEDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDNLDHSKKVLSSLKE 641 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +GI +++DDFGT S LSYL P +K + S + K I +II M + Sbjct: 642 LGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSEQITGAIIAMGHQLSL 701 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +IA+ + + L GCD++Q + P+ + + E+ Sbjct: 702 QVIAEGVENAAQKQLLYEKGCDHLQGFFFSRPIPPEQFEQFIIEQ 746 >gi|323697815|ref|ZP_08109727.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio sp. ND132] gi|323457747|gb|EGB13612.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio desulfuricans ND132] Length = 712 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 141/573 (24%), Positives = 260/573 (45%), Gaps = 12/573 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHG 447 V + + +R + + D W+ +P I G + Sbjct: 143 VAELEASREALARSEQRYRMVADYNYD--WESWIGPNGSLRYISPSCERISGYSPQRFLD 200 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +H D + + + +FR+ + + W+ + +S+ G Sbjct: 201 EPDLMQRIVHREDLNKWVQFMQD--DTVGDEESLDFRIGDINAKTKWLSLVRHSISSDKG 258 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + L DIT +K + + F D LTG+PNR FL+RL + A Sbjct: 259 EPLGLRLSMRDITNRKLVESKLQHSNFHDPLTGLPNRTLFLERLNRAAERCARSGEF-FA 317 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ I++D+++ +ND G +VGD ++V + ++ + ++ D +AR + FG+++ Sbjct: 318 VLFINMDRFQAVNDHYGHSVGDKLMVRIGVKLQQTVRPIDTVARFGSDEFGVLIEDMPRR 377 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + + S P+ + T++ASIG+ +++ + E+L NA++AM AK Sbjct: 378 SDVRPLIRLIFDSFREPVEVDGITFTLSASIGYDVGAGTEVDTEEVLHNAQVAMNEAKEE 437 Query: 688 GGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N V ++ + ++ +L A+ E Y PI+ L D + G EAL +W+ Sbjct: 438 GKNRVTAYDKRMREGMINVLAVESELNRALVAGEFTAHYQPIVNLADGSLYGFEALARWN 497 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKD 804 HP+ G +S EF+ +AEE I + +LE + W + + I +NI++K Sbjct: 498 HPERGLVSPGEFIPVAEETGQIVTLGSQILEEACTAMQEWTRRYPAAENLTIAVNISAKQ 557 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 ++ L ++ ++ +T P R+KL +E+VVM + +S L L+ +GI L++DDFG Sbjct: 558 FAESSLAANVERVLKRTGLRPGRLKLEITETVVMLDAIKSVNQLKTLKNLGILLSIDDFG 617 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S +SYL P D +K + S + + + I I+R+I+ MA ++ ++A+ I E Sbjct: 618 TGYSSMSYLQRFPTDQLKIDLSFVQRMESSPENIEIIRAIVNMAHSLRLRVVAEGIETER 677 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + CDY Q + PL +K+ Sbjct: 678 QRDLLYSLQCDYGQGYLYSRPLPREQAEDFVKD 710 >gi|95931335|ref|ZP_01314049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95132606|gb|EAT14291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 635 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 138/586 (23%), Positives = 263/586 (44%), Gaps = 12/586 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + + + + + + G V E + D++ Sbjct: 37 YIGAPVWRVQVYYFPAVYGSIAGGLVGIWSRRLRQALVKQVKLQEHYLDLFENASDLIQS 96 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRL 479 + + LG + P N I DR R + S + G + Sbjct: 97 VRLDGSILYVNRAWKETLGYLDHDI--PSLNIFDVISSADRPICRNRVISLLDGAELGPI 154 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 + F + D + + I + G GI +I+E+K++ + I A+ D LT Sbjct: 155 EVTF--QCKDGRAVLLEGNIS-LRQDEGQPHSVRGIFRNISERKQAEQKIHQLAYYDTLT 211 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR DRL + + + VM ID+D++KK+ND LG +VGD +L RR+ Sbjct: 212 GLPNRVLLQDRLIHAIADARRFSHY-LAVMFIDLDQFKKVNDTLGHSVGDLLLKDAARRL 270 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 L+ D ARL G+ F +IL + A + ++ P L ERE+ V+AS+G Sbjct: 271 RSCLRDNDTAARLGGDEFVVILSGFKQISNLPHIARKVLDVLSQPYFLAERELVVSASLG 330 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVEN 717 + + + +++NA++AMY AK+ GN F ++ + ++ ++E L A+ + Sbjct: 331 ISVYPQDGDNAELLMRNADMAMYAAKYDHGNGYCFFSEEMNKNATRQLELEEQLRHALID 390 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 + + + P +++ G+EAL++W+ + + F+ + E I A+ ++L + Sbjct: 391 QQFEVYFQPQFDWSRQKLTGVEALVRWNRAQGEVVPPEMFIPVVESTGQIVALGEWVLRQ 450 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 I P+ + +N++ + D L ++ ++ +T + P +++L +E+++ Sbjct: 451 A-CLQIQQLQCQLNVPLQLSVNLSGRQFDDLSLIYKVKKILQETNFPPEQLELEITETIL 509 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKR 895 M N + +R LG+L + GI L +DDFGT S L+YL P D +K + S + + Sbjct: 510 MENADSARKTLGQLSQQGIRLAIDDFGTGYSSLNYLNTFPVDRLKIDKSFLVNVMHDDNH 569 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 AI+ +II MA + ++IA+ + + L+ +GC +Q + Sbjct: 570 AAIVATIISMADTLGLSVIAEGVETMEQVSFLSDLGCQAMQGFIFS 615 >gi|307721927|ref|YP_003893067.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas autotrophica DSM 16294] gi|306980020|gb|ADN10055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas autotrophica DSM 16294] Length = 947 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 140/556 (25%), Positives = 266/556 (47%), Gaps = 13/556 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + + + +++ D+ V+ I G + G L ++H + Sbjct: 395 KKLAQAATVFENTEEVIIIADVEGKVVSVNTAFTNIYGYTLEEIKGKN---LSFLHSGVQ 451 Query: 462 DN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + ++ + + Y G + +F + + + I+ +++S GD++ YI + D+ Sbjct: 452 EKSFYKDTWNQLIEY--GIWKGKFVNKTKSGEIIPVWTTIKKITDSKGDVVNYIIVQTDL 509 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 E + S A+ D LTG+ NR +F + L L ++ + +L ++ ID+D++K I Sbjct: 510 RELETSQAKADYLAYHDPLTGLYNRVNFEEYLKHALVVAHRNTSL-LAILFIDLDRFKVI 568 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +GD+VL ++ R+ L+ D ++R G+ F +IL + ++ A A + + Sbjct: 569 NDTLGHDIGDEVLKAVASRLKTTLRESDFISRWGGDEFVVILENLASASDAAIIASNIIE 628 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ PIN+ + + TASIG A + + S ++K+A+ AMY K G N+ + Sbjct: 629 NLEEPINVAQHSLITTASIGIALYPENGEDSHTLIKHADSAMYLTKETGKNNFRYYTKEL 688 Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ I L A++N+ELY+V+ P +L + I EALI+W +P GN+ EF Sbjct: 689 SEGIQHRLDIDMALRSALQNNELYMVFQPQYKLSTKTIHSAEALIRWQNPTLGNVPPDEF 748 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE I + F+ E + + + +I IN++S + L E A+ Sbjct: 749 IPVAEENGTIIQLGYFVFEESCKAFKKMKHANSQIK-YIAINVSSLQFKEAHLLETFLAI 807 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++ P I++ +E +M + + +L R G +++DDFGT S +SYL +P Sbjct: 808 ATRHNVKPHEIEIEITERFIMEHTIANMNILQNFRNHGFKISIDDFGTGYSSMSYLKQLP 867 Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S + I+ +II ++K + I+A+ I + L++ CD Sbjct: 868 TDTIKIDKSFVDDIAHGSSDNVIIEAIIALSKTLGYVIVAEGIETQDQENFLSKANCDLG 927 Query: 936 QDSHVASPLGFNSILK 951 Q + P+ I++ Sbjct: 928 QGYLFSRPVTCKEIIE 943 Score = 70.4 bits (171), Expect = 2e-09, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 8/167 (4%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 Q LVG L + I F +I L + + + + A+ S +IV D + Sbjct: 244 QTWLVGTFFLFTVFILFALILSHLESNKTKKELLA----FKYAIEHSDNIVVMTDAEKKI 299 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 V G + + G L D +N L++ + + + + +F + Sbjct: 300 VYVNETFEKATGYKAQEVLGQNPRILKS-KPQD-ENIYKELNTKLA-KGEKWEGQFINKR 356 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 D + I P+ G ++ YI + DITE + + + A Sbjct: 357 KDGTLLYEKASIVPIF-LQGKLVNYIALKLDITEYIEQNKKLAQAAT 402 >gi|228915118|ref|ZP_04078715.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844547|gb|EEM89601.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 785 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 155/754 (20%), Positives = 305/754 (40%), Gaps = 20/754 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 38 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 94 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 152 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + + L L + + Sbjct: 153 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 212 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q S + ++ ER D + D + + +LG S Sbjct: 213 QKVSQRTADLITKSNDLVNNQERFKSLYEYHPDPILTIDSNGTVLNINQSGSILLGKDSA 272 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G D+ L +G R + RV+ + + + Sbjct: 273 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 328 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G + DIT K+ + I AF D +T I NR F L ++ + Sbjct: 329 MIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQG 388 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ ID++++K IND +G ++GD VL + +R L LAR+ G+ F +++ + Sbjct: 389 -EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSISLARIGGDEFAVLVHN 447 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 448 HT-EQQLMNLCETLFRITEEPFVVNQHSFYLSLSIGIAMYPFGGINTTTLLQHADIAMYS 506 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N V + S + R+ +++ L A+EN+EL+L+Y P + E+++G EAL Sbjct: 507 AKEKGNNAVCMYDETLSQKITRRLQLEQGLPNAIENNELFLLYQPQVDSKAEKVIGAEAL 566 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G IS EF+ IAEE I +I + L++ + W + + IN++ Sbjct: 567 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQQACLQLKEWHSA-GYTNLKMGINLS 625 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + ++I + + I L +E + M + + + L L+ G+ L++D Sbjct: 626 AIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSID 685 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P DT+K + G + I+++II +A + +IA+ + Sbjct: 686 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGISNDGDEIIQTIISLAHTLNMKVIAEGVE 745 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C IQ + + P+ + + L Sbjct: 746 TKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 779 >gi|304312815|ref|YP_003812413.1| Response regulator receiver [gamma proteobacterium HdN1] gi|301798548|emb|CBL46778.1| Response regulator receiver [gamma proteobacterium HdN1] Length = 726 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 136/606 (22%), Positives = 261/606 (43%), Gaps = 25/606 (4%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 +DI+ + V+ + + + + + Q + S DIV+ D Sbjct: 113 SDILVKPVQQESVINTMRNALMRRKLANDNAHLHEQLAQAERMQKFFSINSPDIVYVLDS 172 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYE 482 + T+L + G + L +D+ I + G R E Sbjct: 173 NGRITYINDNATTLLNQDRQQLIGQHFSTLTG---DDQARQLPYIFNERRGGDRKTCNRE 229 Query: 483 FRVRAA----DNQ---FHWMIIRIRPMSNS-----NGDILRYIGIANDITEQKKSLEGIL 530 +++ + I + + + G+A DI+ +K++ I Sbjct: 230 MQLKKRLDPANGGKTLSIPFEISASGIYDQVPGTGKTRFIGTFGVARDISTRKQAESMIR 289 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 + D LTG+PNR F DR + + + + +D+D++K IND G GD Sbjct: 290 FQVYHDQLTGLPNRTLFRDRCQSAISQARRQQKKVVA-ITLDLDRFKAINDAFGHTAGDQ 348 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L +++RR+ L+ D LAR G+ F I+L + A +R+++ + + Sbjct: 349 LLQNVSRRLQGCLRESDTLARFGGDEFVILLPQTQTVEESNVVAEKIRQALLTDFAVNHQ 408 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--K 708 +++TASIG A + + +L+NA++AM HAK G N + F S + + Sbjct: 409 AVSLTASIGVALFPDHGDSVDTLLRNADIAMNHAKTLGKNRFQYFEHQIQDSLSRRLNLE 468 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 D+ + S+ L Y P I ++V LEAL++W+HP+ G + +F+ IAEE I Sbjct: 469 FDMRAGIAESQFCLDYQPQIDAESGQMVSLEALLRWEHPRLGRLKPGDFLKIAEETGQII 528 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 A+ ++ ++ D+ W+ P I + +N + + + + + + S +I Sbjct: 529 ALGEWVFAQVCADLARWK----NPAIRVSVNFSPSHVEHPQFVPMIVETLRQHQISGQQI 584 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +E++++ L L + GI + +DDFGT S LSYL P T+K + S + Sbjct: 585 ELEITETLLLRQQPEINEKLLMLSQQGIHIAIDDFGTGYSSLSYLHRFPVHTLKMDRSFI 644 Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + I+++++ MA+ + ++A+ + E + L GC +Q + + Sbjct: 645 ERVDAQGRETCIVKALVSMAEGLNLRLVAEGVETEQQYRHLRNAGCTMMQGFLFSEAVSG 704 Query: 947 NSILKL 952 + + KL Sbjct: 705 DVLEKL 710 >gi|329851357|ref|ZP_08266114.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] gi|328840203|gb|EGF89775.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] Length = 717 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 129/523 (24%), Positives = 240/523 (45%), Gaps = 12/523 (2%) Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 V ++LG+ + + G + + + + L E R+ Sbjct: 190 VVLLNHAGESLLGVTAQNTIGKTSH--DLFAPERAALYDSYDRQALQSDGPVLLEEERIV 247 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 Q + ++ + NG+ + + D+TEQK++ I A D LTG+ NR Sbjct: 248 DGRGQERIIQLKKTVLRKPNGEADSILTLGMDLTEQKQAEAQIARLAHYDPLTGLANRTL 307 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F + L +A + + + +D+D++K IND G GD++L+ + RR+ + ++ Sbjct: 308 FTQDMEKALARAARRRHGQTALHCLDLDRFKAINDSYGHLAGDELLIEVGRRLRKCVRRG 367 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D++AR+ G+ F I+ + A + +++ +P L ++ V SIG A Sbjct: 368 DVVARMGGDEFA-IIQEIERAGDAQGLASRVVEAMQVPFTLTNAQVEVGVSIGIALSPDD 426 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVY 724 ++ A++A+Y K G N+ + + ++ DL A+E E L + Sbjct: 427 AQDMHNLMSRADMALYRVKSEGRNNWCFYSAEMDEKLLLRMELEHDLKQAIERDEFELHF 486 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P++ L EIV EAL++W HPK G +S ++F+ +AEE +I I ++L R + Sbjct: 487 QPLLNLKTGEIVSFEALLRWRHPKRGLVSPADFIPVAEESGLIGPIGEWVLRTACRSAAA 546 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W P I +NI+ L + ++ + ++ +P R++L +E+V++ + + Sbjct: 547 WPQ-----PWRIAVNISPVQFRYKSLTQLVKTTLKESGLAPRRLELEITETVILNHETHN 601 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSI 902 +L +R +G+ + +DDFGT S LSYL PFD +K + S + R A I+R+I Sbjct: 602 ISILNAIRGLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDQSFIRDLPHDRNALSIVRAI 661 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 MA+ + I A+ + E + L + C Q + P Sbjct: 662 TDMAQTLGVHITAEGVETEAQLHALEALNCHEAQGYLIGRPAP 704 >gi|56130758|ref|YP_145661.1| hypothetical protein pMOL30_130 [Ralstonia metallidurans CH34] gi|94152542|ref|YP_581949.1| diguanylate cyclase/phosphodiesterase [Cupriavidus metallidurans CH34] gi|56068748|emb|CAI11310.1| hypothetical protein [Cupriavidus metallidurans CH34] gi|93358912|gb|ABF12999.1| diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with PAS/PAC sensor(s) [Cupriavidus metallidurans CH34] Length = 705 Score = 506 bits (1302), Expect = e-140, Method: Composition-based stats. Identities = 132/575 (22%), Positives = 256/575 (44%), Gaps = 14/575 (2%) Query: 389 HVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + ++ E + + + + D V D G + Sbjct: 125 NRREREALVSQLRTELENRKISANVLESTSDAVLVTDARLRIQYINRAFTAATGYPGADI 184 Query: 446 HGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G +L H R + I + GR + E + AD + I+ + + Sbjct: 185 VGRPAGFLRSGRH--GRGFYAEIFATLRDG--GRWEGEVWLLRADGSIAPDWVTIKTVHD 240 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G++ ++ + DI +++ + A+ D+LTG+PNR+ F DRL ++ SA + Sbjct: 241 EHGEVFSFVAMFADIMQRESLRAQYMHLAYYDSLTGLPNRRLFQDRLGHAIERSA-NKGT 299 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 +++ +D++++K +ND LG + GD +L + R L+K D + R+ G+ F IL Sbjct: 300 EFSLLFLDLNRFKDVNDTLGHSFGDRLLEVVGERFKRLVKEADFVGRIGGDEFTFILHDT 359 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + ++ A + +A PI L + V+ASIG + + + T+ ++ NA+ AMY A Sbjct: 360 ADPAQVESIARRIFDELAKPIVLNGTQSYVSASIGVSRFPADGTTAEALIMNADAAMYRA 419 Query: 685 KHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G F + R+ I L A+E +E L + P + L +++G E L+ Sbjct: 420 KEDGIGACHFFSRGLHTKVLKRLDISNALHRALEANEFSLAWQPQVSLTTGKVIGAEVLL 479 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W +S +EF+ +AEE +I AI ++L R + A P + +N + Sbjct: 480 RWMRDGSVPVSPAEFIPVAEETGVIGAIGDWVLRESCRYVAKLEALAIDPEFRVAVNFSP 539 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + E + I++ R K+ +E+ + + E + L G+ + +DD Sbjct: 540 LQLSWHR-QEPVLQTIAQFGVDCRRFKIELTENALFVHEEGLLEFVRELGAAGVGIAIDD 598 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LS L ++P +K + + + + I++++I MA + ++A+ + Sbjct: 599 FGTGYSNLSSLKHLPVTELKIDRAFIHDMQGSHSDRQIVQAMISMAHMLGLRVVAEGVEY 658 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GC+ Q + P+ F++++KLL Sbjct: 659 VWQVSVLREFGCEVGQGYLFSRPIDFDALVKLLDA 693 >gi|255022007|ref|ZP_05294013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidithiobacillus caldus ATCC 51756] gi|254968493|gb|EET26049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidithiobacillus caldus ATCC 51756] Length = 709 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 134/579 (23%), Positives = 258/579 (44%), Gaps = 12/579 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IR 450 Q ++ ER + + GD V D +LG A + G + Sbjct: 120 ERQRTEQTLWEQKERAEVTLHSIGDAVITTDTQGRVTDMNVVAEALLGYARSEVLGTALE 179 Query: 451 NWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + + + + L + D + + P+ + G + Sbjct: 180 DVFHIVQEGTHTPVANPVRRVLEEGKVVGLANHTVLITKDGEERAIEDSAAPIRDRRGAL 239 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 L + + +D+TE+++ + A D LTG+PNR FLDRL + + + V Sbjct: 240 LGVVLVFHDVTEKRRLTAELAHQATHDALTGLPNRTLFLDRLAHDRAQATRHER-QLAVG 298 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++D+D +K +ND G A GD +L + +R+ ++ D LAR+ G+ FG++L + Sbjct: 299 ILDLDGFKLVNDRFGHAAGDALLQEMAQRLQTKMRSGDTLARMGGDEFGLLLTDITQIDE 358 Query: 630 IADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + M +++ P +L E+ ++ASIG S+ + +++L++A+LA+Y AK G Sbjct: 359 VEHACARMLEALRTPFHLPGGEEVPLSASIGLTSYPLDDSSPADLLRHADLALYAAKAAG 418 Query: 689 GNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 + F + ++ L A++ L L Y P++ + + I G+EAL++ DH Sbjct: 419 RDCFRWFDWPMDKRQEEAMEVRKMLENALDRGHLLLHYQPVVEIDNGPI-GVEALLRLDH 477 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G +S + F + + + I F+L +W Q P+ + +NI + LL Sbjct: 478 PERGLLSPAAFASALDAPRLARRIGCFVLASAFAQAQTWHRQG--LPLRVSVNIGAHHLL 535 Query: 807 DNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D +QA + PS +++ +E+ + + ++ L ++G+ + LDDFGT Sbjct: 536 DQRFLADLQAALDAHPDLPPSSVEIEITETAPLLDFAVAQDTLAACNRLGVRIALDDFGT 595 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 + L+YL +P T+K + S + K AI+ ++ A+ + +IA+ + Sbjct: 596 GNASLTYLQKLPAQTIKIDQSFVRDIINDPKDYAIVTGVVASARLLGLEVIAEGVETTEH 655 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 L+ + C +Q +A P+ +I + PLV N Sbjct: 656 AVLLSHLRCHCLQGYAIARPMAPEAIPDWIIRYNPLVNN 694 >gi|167032897|ref|YP_001668128.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166859385|gb|ABY97792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 562 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 265/566 (46%), Gaps = 18/566 (3%) Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464 AV + ++ + D+ + +I G + + G L +H + F Sbjct: 5 YRAAVDAA--AIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLH--EPAFF 60 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQK 523 + + R + E RA D +W+ + P+ + G + +Y+ I D+TE++ Sbjct: 61 VGMWRALAAGR--VWKGEICNRAKDGSLYWVDSTMVPLIDPLTGQVRKYVSIRFDVTEKR 118 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + L + D LTG+PNR D L L S +++ V ++D+D +K +ND Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAYSRR-EDIPLAVCMLDLDGFKAVNDGY 177 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G AVGD +LV + +R+ +L+ D +ARLSG+ F +IL ++ ++ + +++A Sbjct: 178 GHAVGDLLLVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEQQLHAALRRVLRALAA 237 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++++ASIG + + ++++A+ AMY AK RG N F Sbjct: 238 PCVVREHRLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQEL 297 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + A+ NSEL L Y P + L +++G E L++W P G + +F+ Sbjct: 298 KATHQTVARVRRALHNSELCLYYQPKVNLRSGQVLGFEGLLRWQRPGRGVVPPGDFLPWV 357 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I +++ + + +W+ Q P + +NIA++ L N+ E +Q L++ Sbjct: 358 EQTDLIVEIGEWVVGQALSQLQAWQRQG--QPWSLSVNIAARHLQRNDFAERLQQLLAAY 415 Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P+R+ L ESV + N + L R +G+ +LDDFGT S LSYL +P T Sbjct: 416 PEVDPARLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQT 475 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + + +A+ ++I +A+ +IA+ + + L +GC+ Q Sbjct: 476 IKIDQSFVRDILHDQDDLALTAAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGY 535 Query: 939 HVASPLGFNSILKLLKE-RFPLVKNT 963 +A P+ + + + R P Sbjct: 536 CIARPMPVSEVQAWAQAYRQPEQWRA 561 >gi|253998083|ref|YP_003050146.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253984762|gb|ACT49619.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 828 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 153/612 (25%), Positives = 284/612 (46%), Gaps = 17/612 (2%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQSLAV 411 L I +V+ +IG + + A + I S+ V Sbjct: 222 MLVEPIMNPDGELHWAETYKSPVVIDGQVIGTVGFARDITAERWLEAEIARRENEYSMLV 281 Query: 412 LGSGDIVWDWDIVRDRVTTTP--DIATILGLASGSMHGPIRNWL---PYIHINDRDNFRT 466 V +D RV + L G + G ++I + + Sbjct: 282 QNLPLTVVRYDRECRRVFVNSYCAMKESLKHNIGQVIGKTPMEFWSGSIVNITAEEYQQR 341 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMI-IRIRPMSNSNGDILRYIGIANDITEQKKS 525 I+ L+ + + + +RI P +++G ++ + +A+D+TE + Sbjct: 342 IMAVMASGESDTLE----LITQYGEEQLVHLVRIVPERSASGAVMGAMTVASDVTENSRY 397 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + I A+ D LT +PNR F +L +++ + + + ++ ID+D +K IND LG Sbjct: 398 RKRIEQLAYHDILTELPNRLLFNQQLQILIEQTPINKHG-FCLLFIDLDNFKTINDTLGH 456 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +VGD +L+ ++RRI +LL D+LAR+ G+ F I L + L A A + ++ +P Sbjct: 457 SVGDKLLIEVSRRIRQLLGKDDMLARMGGDEFAISLPHCLSRLDAALLAARIIDALNVPF 516 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703 + + V+AS+G A + ++LK+A+LAMYHAK +G N+ + + ++ Sbjct: 517 EVSSIKFFVSASMGIAFYPEDSSHLDDLLKHADLAMYHAKRQGRNNFQFYNQELTVNAAE 576 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R++++ L A+ EL L Y PI+ L E+ G EAL++W+ G + +F+ IAEE Sbjct: 577 RLLMENLLRQALAKGELQLYYQPIMELATGELHGAEALLRWNSFDLGMVGPDKFIPIAEE 636 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 MI I ++L R ++W P + IN++S+ + + + + +T Sbjct: 637 RGMIVDIGAWVLREGCRTAVAWNA-LRSQPCVLAINLSSRQFMQQDFLSRITDCLQETGC 695 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P +K +ES+++ + + R L L IGI++ +DDFGT S L YL P VK Sbjct: 696 HPQWLKFEITESLLLHDSDHIRQTLEALHSIGITIAIDDFGTGYSALGYLNKFPVSQVKI 755 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S ++ + ++++II MA ++ ++A+ + K L+++GC Y+Q + Sbjct: 756 DRSFISDIATNTESALLVKAIIAMADSLGKELVAEGVETAEQAKLLSQLGCQYVQGYYYG 815 Query: 942 SPLGFNSILKLL 953 P+ + + L Sbjct: 816 RPVPLETFNQSL 827 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 3/179 (1%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + + D+I + + +I + Q + I + Q Sbjct: 94 GGCVAHFSHGNQEIFDLISFSPLSDEHGQMIGVLAIGRQTDQRDAAETLEIRRREQYQRA 153 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + +VW D + T A +L +A + Y + + Sbjct: 154 VLNTFPFMVWLKDKQSRFLATNRAFADVLQIAHDE-DMRGKTDFDYFPHAMAEGYVADDQ 212 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + ++ E + D + HW P+ +G ++ +G A DIT ++ Sbjct: 213 EVLASGAAKMLVE-PIMNPDGELHWAETYKSPVV-IDGQVIGTVGFARDITAERWLEAE 269 >gi|289626963|ref|ZP_06459917.1| sensory box protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650793|ref|ZP_06482136.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 721 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 150/577 (25%), Positives = 269/577 (46%), Gaps = 26/577 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 147 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 206 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + ++D R + + D +++ I + + Sbjct: 207 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 257 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + A DI + K + + A+ D LTG+PNR +DRL+ + L NLR ++ + Sbjct: 258 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 316 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627 D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + + Sbjct: 317 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 376 Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A +R+ +A P+ L + VT SIG + +++LK A++A+Y AK Sbjct: 377 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 436 Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F VS + S R+ ++ DL LA+ +E L + I D+ I G EAL++W Sbjct: 437 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 496 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802 +HP++G +S +F+ I EE MI + +L+ + Q + +NI+ Sbjct: 497 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 556 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + N+ E +Q + + S +KL +E +V+ N + + L + L+++G+S +DD Sbjct: 557 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 616 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 617 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 676 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L R+GC Q + PL LL +R Sbjct: 677 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 713 Score = 94.6 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 8/152 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + +R LA+ + WD DI +R+ + + + G+A+ R + Sbjct: 18 AERVLQQTRDRLELALELAQMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 77 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +R R + + + R+ LQ +R + D + R R N +G ++ G Sbjct: 78 LPAEERRRMRAVYAAALENRQDCLQVTYRFQLQDGTSRLLESRARIYRNEHGQAVKLSGT 137 Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+Q ++ E AF D++T Sbjct: 138 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 169 >gi|15805493|ref|NP_294189.1| sensory box/GGDEF family protein [Deinococcus radiodurans R1] gi|6458153|gb|AAF10046.1|AE001906_2 sensory box/GGDEF family protein [Deinococcus radiodurans R1] Length = 805 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 144/534 (26%), Positives = 263/534 (49%), Gaps = 42/534 (7%) Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + R + ++ + +Q+E R+ D + + + P+ + NG++L Y+G D+TE Sbjct: 257 ERGRHMDEAARERKT--VQFEERMLRPDGEPVYQLRNYTPLFDENGELLLYLGHGVDVTE 314 Query: 522 QKKSLE-------------------------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556 +++ E + +A D+LTG+PNR F DRL+ + Sbjct: 315 LRRTQEALRELNAQLEERVEARTAELEALSRQLQHDALHDSLTGLPNRALFSDRLSQAIA 374 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 S + V+ +D+D++K IND LG GD +LV + RR+ L+ D +ARL G+ Sbjct: 375 RSKLPGGPQYAVLFLDVDRFKGINDTLGHPTGDAMLVEMARRLRACLRATDTVARLGGDE 434 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLE----------REITVTASIGFASWTSS 666 F I+L ++ + A A ++ ++ P+ + ++T++AS+G Sbjct: 435 FTILLEPLQSTEQAAQVAARIQDALRRPMQMPAAGPGGLPGGWHQVTMSASLGIVHSQPD 494 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724 ++ +L++A++AMY AK G F ++ +L A+ EL + Y Sbjct: 495 YDSAMAVLRDADIAMYRAKDGGRAKYRVFTPEMREHILHVNRMEHELRRALAADELRVRY 554 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P++ L I G EAL++W HP+ G + +F IAEE ++ I+ ++L R R+++ Sbjct: 555 QPVLDLDRGRIEGFEALVRWQHPERGLLGPDDFTPIAEESGLLPDIDRWVLARACRELVQ 614 Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W+ PP+ + +N S+ L ++ E ++ L+ +T + P R+ L +ES ++ Sbjct: 615 WQRLYPHDPPLHLSVNFCSQHLAAPDVHERVKELLQRTGFDPGRLNLEITESSLLSQTGD 674 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + + RLR++G+ L LDDFGT S LSYL P D +K + S + G + ++R+ Sbjct: 675 VQRNMERLRQLGVRLHLDDFGTGYSSLSYLQLYPIDVLKIDRSFVQGMLDNDSNAELVRT 734 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ MAKN+ ++A+ I + L +GCD Q + L ++ L+ E Sbjct: 735 IVAMAKNLNLKVVAEGIEDPRQLAALRGLGCDAGQGFLFSPALDVHAARTLVAE 788 >gi|77359897|ref|YP_339472.1| hypothetical protein PSHAa0951 [Pseudoalteromonas haloplanktis TAC125] gi|76874808|emb|CAI86029.1| putative orphan protein; putative conserved domain [Pseudoalteromonas haloplanktis TAC125] Length = 1002 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 152/590 (25%), Positives = 272/590 (46%), Gaps = 18/590 (3%) Query: 380 ILIGFTVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + I + L + I R S AV SG V D P + + Sbjct: 420 MTIEIRKLIDGLNQRIIEKEIAEKAARRLSKAVAFSGTGVVITDKNFVIEYVNPKMLEMT 479 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRLQYEFRVRAADNQFHWM 495 + + L I IL + R + + + + + W+ Sbjct: 480 SFSEEHFNRAP--LLSIIASE-----MAILIDDIDVDLRSRNCWRGDTLIESNNKAPIWV 532 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + I P+ +G I Y+ A DI+ K+S + A+ D LTG+ NR F +L + Sbjct: 533 SLSISPIREDDGTITSYVASAQDISFVKESQRKMEQLAYFDTLTGLANRTFFRMQLRKSM 592 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 L+ + + D+D++K+IND LG GD +LV + R+ + L+ D +ARL G+ Sbjct: 593 ALAER-GHYAFALFYFDLDEFKRINDTLGHNAGDQLLVEVANRLKQRLRAEDTIARLGGD 651 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L + A ++K++ PI L E+ ++ASIG ++LK Sbjct: 652 EFAILLSGIEHQEHATQVANTIQKTLNEPIQLGSNEVIISASIGITMAPYDSQEEDQLLK 711 Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +A+LAMY AK +G N + ++ ++R+ I+ +L A+++ +L + Y P I + Sbjct: 712 HADLAMYEAKAKGRNTFHFYSQELNTAANERLFIENELRQAIKDKQLTVYYQPQIDSRTQ 771 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +VG EAL++W HP G I+ ++F+ IAE +I + ++L + + Q Sbjct: 772 LVVGYEALLRWFHPTEGAIAPTKFIPIAEATGLIVELGEWVLHQACNFAVKLERQGRANN 831 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I IN++++ D L ++ +I+ T S + L +ES++MGN E + L L+ Sbjct: 832 --IAINLSARQFKDASLLPTLKKIIASTQVSAKSLHLELTESMLMGNVEAAIAQLHELKG 889 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +G+S+++DDFGT S LSYL P D +K + S + +AI +II MA+ ++ Sbjct: 890 LGVSISIDDFGTGYSSLSYLKRFPVDILKIDRSFIKDIPDDNNDMAITAAIIAMAQKLKL 949 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 ++A+ + ++ L C +Q + + P+ + L + + K Sbjct: 950 DVVAEGVETVEQVEFLKNNNCFIVQGYYFSPPIAERDLPMLFERLEQMAK 999 >gi|152992906|ref|YP_001358627.1| hypothetical protein SUN_1317 [Sulfurovum sp. NBC37-1] gi|151424767|dbj|BAF72270.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 866 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 140/594 (23%), Positives = 261/594 (43%), Gaps = 15/594 (2%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL---GSGDIVWDWDIVRDR 427 L L+ I++ T+ + + + E+ LA + + + D Sbjct: 156 LTSLLINIILSRYKTLSSNTIDLLNEIKSRQDKEEKLKLAASVFSHAREGIIITDAENKI 215 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + ++ G + G L + F + + + E R Sbjct: 216 IEVNDTFISMTGYKREEVLGKNPKLLKSGKHD--SGFYAEIWRSISEK-DYWSGEIINRR 272 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + + + ++ I + + G Y+ + DIT +K+ + + A D LT +PNR Sbjct: 273 KNGEEYMEMLTISAILDDQGKPKNYVALFTDITTKKEHQKQLEHIAHYDVLTSLPNRVLL 332 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 DRL+ L S + NL V IDID +K+IND G GDD+L++L+ R+ L+ D Sbjct: 333 ADRLSQALHSSRRN-NLVLGVAFIDIDGFKEINDTYGHNTGDDLLITLSSRMKGALRNND 391 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW-TSS 666 LAR+ G+ F ++ + + + PI L + ++V+ASIG + Sbjct: 392 TLARIGGDEFIVVFTDLKKPEDCHPMLERLLQVTSAPIILNNKSMSVSASIGLSIAAPDK 451 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVY 724 +I + ++++ A+ AMY AK G N F + + + + + A++N E L Y Sbjct: 452 EIDADQLIRQADQAMYQAKQSGKNRYSVFDIEKDSAVNIKRERLNQISKAMDNREFVLYY 511 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P + + E++G+EALI+W+HP G + EF+ I E + + +++E I + Sbjct: 512 QPKVNMTTGEVIGVEALIRWEHPDHGLLLPGEFLPIIENNMISIKLGDWVIETALSQIET 571 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPER 843 W+ Q I I +NI + L + ++ L+S PS ++L E+ V+ + + Sbjct: 572 WQRQGLD--ISISVNINALQLQQIDFVSRLEELLSMHATVDPSLLELEVLETSVIDDITQ 629 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRS 901 ++ R +G+ LDDFGT S L+YL +P +K + + AI+ Sbjct: 630 VSNVMHRCIDLGVRFALDDFGTGYSSLTYLRRLPAHLIKIDQIFVRDMLIDPDDQAIIEG 689 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +I ++K +IA+ + K L ++GC+ Q +A + + I + +K Sbjct: 690 VIGLSKAFGRKVIAEGVETIEHAKALLQIGCELGQGYGIAKAMKASDIQEWIKS 743 >gi|119897962|ref|YP_933175.1| GGDEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72] gi|119670375|emb|CAL94288.1| GGDEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72] Length = 790 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 137/608 (22%), Positives = 266/608 (43%), Gaps = 22/608 (3%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILI----GFTVIQHVLATGYFSQGIFSDG-ERQS 408 + +I GL L+ +L+ ++ + + + ER Sbjct: 173 AALDRLGSTSTAMIVLLGAFGLGLVAMLLRQQGSIKALEERDRELRRGEAVQRELRERLE 232 Query: 409 LAVLGSGDIVWDW----DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 +++ + D + + + T+ G+ L IH +DR+ Sbjct: 233 KIADNVPGVIYQFRCCPDGHIEFPYASRGLHTMFGITPEVAARDGSAVLAAIHPDDREVV 292 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + E+R+ A + WM + P +G L + G +D++ K Sbjct: 293 AGAIRRSAETLQ-PWVCEYRIERAGGGYRWMSVFATPQRERDGATL-WHGHCHDVSSYKA 350 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + I AF D LTG+PNR+ +DRL L A + ++ ID+D +K +ND G Sbjct: 351 AEDEIRHLAFYDPLTGLPNRRLLMDRLRHALATHARSRH-HGALLFIDLDNFKTLNDTQG 409 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRK 639 GD +L + R+ ++ D +ARL G+ F ++L + + + + Sbjct: 410 HQYGDMLLRQVAARLSACVREADTVARLGGDEFVVMLEDLDRDKGAAARQAESAGEKILA 469 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ L RE T SIG + ++ +E+LK A+LAMY AK G N + F Sbjct: 470 ALNDAYQLDGREAHSTPSIGITLFDAADAEIAELLKRADLAMYQAKEAGRNTLRFFDPVM 529 Query: 700 FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + ++ +L ++ L++ P + D + G EAL++W HP+ G +S + F Sbjct: 530 QATVDAHSALESELRRSLRQGNFALLFQPQLD-RDGRMTGAEALVRWHHPEQGLVSPAAF 588 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE +I + ++LE + W + + +N++ ++ C+ ++ + Sbjct: 589 IPLAERTGLILPLGRWVLENACDKLAEWAADPETAHLTLAVNVSVREFRHPGFCDQVERV 648 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T +P R+KL +ES+++ + E + + RL+++G+ +LDDFGT S L+YL +P Sbjct: 649 LQRTGVAPGRLKLELTESLLLEDVEDAIERMDRLKRLGVGFSLDDFGTGYSSLAYLKRLP 708 Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + + I R+II + +++ ++A+ + L R GC Sbjct: 709 LDQLKIDRSFVRDVMTDPNDAIIARTIIALGQSLGLDVLAEGVETAEQHDFLLRHGCQSF 768 Query: 936 QDSHVASP 943 Q P Sbjct: 769 QGYLFGRP 776 >gi|330869804|gb|EGH04513.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 722 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 150/577 (25%), Positives = 269/577 (46%), Gaps = 26/577 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 148 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 207 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + ++D R + + D +++ I + + Sbjct: 208 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 258 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + A DI + K + + A+ D LTG+PNR +DRL+ + L NLR ++ + Sbjct: 259 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 317 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627 D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + + Sbjct: 318 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 377 Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A +R+ +A P+ L + VT SIG + +++LK A++A+Y AK Sbjct: 378 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 437 Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F VS + S R+ ++ DL LA+ +E L + I D+ I G EAL++W Sbjct: 438 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 497 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802 +HP++G +S +F+ I EE MI + +L+ + Q + +NI+ Sbjct: 498 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 557 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + N+ E +Q + + S +KL +E +V+ N + + L + L+++G+S +DD Sbjct: 558 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 617 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 618 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 677 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L R+GC Q + PL LL +R Sbjct: 678 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 714 Score = 94.6 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 8/152 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + +R LA+ + WD DI +R+ + + + G+A+ R + Sbjct: 19 AERVLQQTRDRLELALELAQMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 78 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +R R + + + R+ LQ +R + D + R R N +G ++ G Sbjct: 79 LPAEERRRMRAVYAAALENRQDCLQVTYRFQLQDGTSRLLESRARIYRNEHGQAVKLSGT 138 Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+Q ++ E AF D++T Sbjct: 139 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 170 >gi|170749422|ref|YP_001755682.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170655944|gb|ACB24999.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 777 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 163/730 (22%), Positives = 292/730 (40%), Gaps = 26/730 (3%) Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301 + + + A E + ++ L W + + + F Sbjct: 51 VYLFWNPANRAYLAGLETLILPLAVVSLQQCWRWRSRPKPLQVPSSFVQGVVLAAQAYGF 110 Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL--LIPAWILIFIWFIGLWMAIT 359 + + A L I G AVL + + + I + +A T Sbjct: 111 LLASIPVMLFSGADAHGRLLIASSIAGLIATGMSAAVLPRVAIGYSGLIILGSFIALATT 170 Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSG 415 + L + I I + + E L + + Sbjct: 171 GEAFYIYVAVLLFFYAIFICFTILHLSRLLTMRVI-AQIELERQQEFTHLLLNEFEESAS 229 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY--IHINDRDNFRTILDSFVG 473 D +W+ D +P + + G + + G L + R + T L S + Sbjct: 230 DWLWETDADLRLQHVSPRLIEVAGSSERQLMGLPLERLLLPPVAPP-RSHSSTTLWSCIA 288 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 RR ++ + + +P + G Y G+ +D+TE+++S E + A Sbjct: 289 ERRAFRNLHLQL-DIAGERRTWCLSGKPTFDRAGAFSGYRGVGSDVTEKRRSEERLSYLA 347 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D+LT +PNR F +L R V+ +D+D++K +ND G A GD +L Sbjct: 348 LHDSLTDLPNRVLFH-QLQEA-ARERLAQGDRFAVLALDLDEFKSVNDTFGHAAGDKLLK 405 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISE--NNSLKIADFAIAMRKSIAMPINLLERE 651 S+ R+ LARL+G+ F ++ + I A + +++A P + Sbjct: 406 SVAERLRSFEASDVQLARLAGDEFAVLATGRSARDLHAIEALANGIVEALASPFTIDGIR 465 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKE 709 +TV+ SIG A E+++ A+LA+Y K G N + R + Sbjct: 466 LTVSVSIGIAIAPQDG--CQEIMRRADLALYRMKSEGRNGYRFYEAEMDERIEARRALTA 523 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 DL A++ E L + PI+ + + G EALI+W HP G +S EF+ +AEE +I Sbjct: 524 DLRGALDRDEFVLYFQPIVAAKECRVRGFEALIRWKHPVRGFVSPGEFIPLAEETGVIIP 583 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 + ++L R W + I +N++ + ++L + +++ + + + +R++ Sbjct: 584 LGEWILREACRIAAGWP-----GDVRIAVNLSPRQFRHSDLTQLVRSALRTSGLAAARLE 638 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ESV + L +LR++G+ L+LDDFGT S LSYL I FD +K + S + Sbjct: 639 LEVTESVFLEATPAINATLSKLREMGVRLSLDDFGTGYSSLSYLRRIAFDKIKIDQSFVR 698 Query: 890 GSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 ++R AI+ +II MA +++ TI A+ + + L GC Q + PL Sbjct: 699 DLPQERGAAAIVSAIIDMATSLDMTITAEGVETDAQRACLLEQGCHEFQGYLFSKPLPAE 758 Query: 948 SILKLLKERF 957 L + R Sbjct: 759 QAAALARSRQ 768 >gi|145299722|ref|YP_001142563.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142852494|gb|ABO90815.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 832 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 149/590 (25%), Positives = 261/590 (44%), Gaps = 32/590 (5%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 +G + + + + SD + R S + + + D + + I G Sbjct: 246 LGSVLTIFSVRMVAELERLQSDAQLRLSAVAFETHEGIIITDPDFKILRVNHAFSQITGF 305 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR------GRLQYEFRVRAADNQFHW 494 S + G +H L S + R Q E + D + Sbjct: 306 DSQRVIG--------LH------LGNELWSGLDGLGYELNTLNRWQGETQRLHLDGHTYP 351 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + P+ + G I ++ DI+E+K + I A+ D LTG+PNR+ + L Sbjct: 352 QWEIVTPVQDDKGVISHFVICFEDISERKAAERRIQDLAYYDELTGLPNRRQLHETLAQA 411 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 ++ D NL ++ ID+D +K IND LG A GD +L ++ R+ L++ D LARL G Sbjct: 412 FSEASRD-NLIGALLFIDLDHFKTINDSLGHATGDWLLKEVSSRLKRLVRQGDCLARLGG 470 Query: 615 NRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 + F ++L S ++ A + IA P N + + + AS+G + + Sbjct: 471 DEFVLLLPSLSASPPQAEMQADLIAERLISEIAAPYNHGVQVLHIGASVGITLFPGREQG 530 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPI 727 ++LK A+ AMY AK G F S + + +L A+ EL L Y P Sbjct: 531 VDDLLKQADTAMYQAKSAGRKTRRFFDASMQQQADRRLLIHNELRNALSQQELTLYYQPQ 590 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + +I+G+EALI+W P +S +EF+ IAEE +I I ++L + W + Sbjct: 591 HMVEGGDIIGVEALIRWQPPGRALVSPAEFIPIAEETDLIVDIGNWVLHEACAQYVLWEE 650 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 P + +N+++K + E + +++ T P+ + L +ESVV+G+ E + Sbjct: 651 NGIHIP-QLSVNVSAKQFHATDFVECIHDVLAATGMDPACLNLEITESVVLGHAEDTISK 709 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905 + L+ IGIS +DDFG S LSYL +P D +K + S + +AI+ ++I M Sbjct: 710 MSELKAIGISFAIDDFGAGYSSLSYLKRLPADELKIDRSFIQDIPKDGDNMAIVEAVIAM 769 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+++ + A+ ++ L GC + Q + PL + + ++ Sbjct: 770 ARHMGFNVTAEGGESRQQLEFLQAQGCHFYQGYLASKPLPVPYLERYVRR 819 >gi|50086545|ref|YP_048055.1| putative diguanylate cyclase/phosphodiesterase [Acinetobacter sp. ADP1] gi|49532519|emb|CAG70233.1| conserved hypothetical protein; putative diguanylate cyclase/phosphodiesterase [Acinetobacter sp. ADP1] Length = 676 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 154/594 (25%), Positives = 270/594 (45%), Gaps = 17/594 (2%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + P + ILI + L+ + I D E LA+ + IV D Sbjct: 90 FVAPQYSIDQRIDGILISVFELTEQLSIHQQLEKILKDFENYKLAID-AHSIVAITDNRG 148 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 I + G + H R F+ + + + E Sbjct: 149 VITHVNEKFCDISQYEYYELVGTTHKIINSGFHP--RSFFKQMWKTIAQGNI--WKGEIC 204 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 R + +W+ I P+ +++G + YI I DIT+ K S + A D LTG+PNR Sbjct: 205 NRTKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDITQLKSSEDHAKYMALYDELTGLPNR 264 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + DRL +++LS + ++++D+D +K +ND LG GD++L + R+ + ++ Sbjct: 265 RYVKDRLKKVIELSKESQH-HSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVR 323 Query: 605 FPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 + +ARL G+ IIL + + + A + SI P NL + I + SIG Sbjct: 324 ETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIG 383 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVEN 717 + + I +E+LK A++A+Y AK G N + +F + R + DL A+ Sbjct: 384 IFVFNDASIPQNELLKYADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIR 443 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E L Y PI+ ++I+G EAL++W HP G I EF+ AE+ +I I +L Sbjct: 444 DEFELYYQPIVD-QHKKIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMM 502 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 + + W + + +NI+ + ++ E + +I + +P R++L +ES+ Sbjct: 503 ACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTESMF 562 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895 + + S + +L +IG+ ++DDFGT S L+YL +P D +K + S + + Sbjct: 563 YTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRD 622 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 IAI+ +II +A ++ ++A+ + E LT+ C Q PL +SI Sbjct: 623 IAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGRPLPIDSI 676 >gi|77919670|ref|YP_357485.1| signal transduction protein [Pelobacter carbinolicus DSM 2380] gi|77545753|gb|ABA89315.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM 2380] Length = 988 Score = 505 bits (1301), Expect = e-140, Method: Composition-based stats. Identities = 141/574 (24%), Positives = 262/574 (45%), Gaps = 17/574 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +L ++ + + +SL + S D++ D + G + G Sbjct: 415 EILERNQAARALKESEQEKSLILNSSSDLIAYLDPGLRIRWANRTSSDRAGRQQTQIEGL 474 Query: 449 I--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 W I + + L V +D Q ++R P +S Sbjct: 475 PCYAAWHGLDSP-------CIGCPVLRSHKTGLPEHGEVVTSDGQI--WLVRAFPFHDSQ 525 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G + + + D++EQKK+ I A+ D+LT +PNR F L L+ + + Sbjct: 526 GRVSGFATFSLDVSEQKKAQRTIHRMAYYDHLTELPNRALFQKELDRRLEEAVGRGHG-L 584 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 +M +D+D +K +ND LG A GD +L + R+ L D LARL+G+ F +L ++ Sbjct: 585 ALMFLDLDHFKGVNDSLGHAKGDLLLQKIAARLQGCLGREDFLARLNGDEFIFLLTEIDD 644 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + A +++ +A P NL EI V SIG A + + ++K A+ A+Y AK Sbjct: 645 PVAVKALAGNVQRIMASPFNLDGDEIYVGTSIGIACYPLHGVDVENLMKRADRALYAAKE 704 Query: 687 RGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 RG N +E F ++ L A+ +E +L Y P + L ++G+EAL++W Sbjct: 705 RGRNAIELFSEQINARFHRRQQLEMRLQNALAKNEFFLEYQPQVDLQTGRMLGVEALLRW 764 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 + G + +F+ +AEE +I+ I ++L ++ +SW + + +NI+ + Sbjct: 765 RNDDLGLVMPDDFISLAEETGLIRPIGEWVLRTACQEYLSWWQPEGAE-LRLAVNISGQQ 823 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + + + ++ T + P ++L +E+V M + E + L+ + L +DDFG Sbjct: 824 IKHPDFVPIIDDILHSTGFDPRLLELEITETVAMEDVEGNIGTFRDLKARRLQLAIDDFG 883 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL + P D +K + + + + +++ +I+ MA+++ IIA+ + E Sbjct: 884 TGYSSLSYLRHFPIDRLKIDRKFIRDAAKCSDSASLVEAIMSMARSLHLDIIAEGVETEE 943 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L + GC IQ P+ + + K L+E+ Sbjct: 944 QVAYLWKQGCRQIQGFFFGRPMSASDLQKYLQEQ 977 >gi|89093798|ref|ZP_01166744.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp. MED92] gi|89081928|gb|EAR61154.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp. MED92] Length = 970 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 146/560 (26%), Positives = 255/560 (45%), Gaps = 13/560 (2%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + + + + + D + I G + + G H +D F Sbjct: 296 QAASVFEHANEGIMITDPEGTIQNANLAFSRITGYSRNEVIGQNPRIFSSGHHDD-QYFA 354 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + S +G E R D + I + + + NG++LRY+ + +DIT KK Sbjct: 355 EMWKSLSE--KGNWTNEIWNRRKDGEIFAAIQTVSAIKDENGELLRYVSLFSDITALKKQ 412 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + + A D LTG+PNR DRL + + L V D+D +K++ND G Sbjct: 413 QQQLEKIAHYDALTGLPNRVLLSDRLQQAILQAKRHKRL-LAVAFFDLDGFKEVNDTHGH 471 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 ++GD +L+ L R + L+ D LARL G+ F ++L ++S + + K+I+ PI Sbjct: 472 SIGDKLLIELAERSKQALREGDSLARLGGDEFVVVLQDLHSSEESLPVLERLLKAISKPI 531 Query: 646 NLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 + EI V+ASIG + +I + ++++ A+ AMY AK G N F RS R Sbjct: 532 FMNHTEICVSASIGITFYPQADEIDADQLIRQADQAMYVAKQSGKNRYHIFDTEHDRSVR 591 Query: 705 VMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML-IA 761 + L A+ N E L Y P + + ++VG EALI+W+HP+ G + +F+ IA Sbjct: 592 GHHDQVLRIHSALNNREFELYYQPKVNMRTGQVVGAEALIRWNHPENGLVMPGDFLPVIA 651 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 + ++ + ++LE+ I W Q P + +N+ + L + + +Q +++ Sbjct: 652 GDAGLVVEVGDWVLEQAMTQIDQWHQQGLDVP--VSVNVDALHLQLPDFVDRLQQMLAAH 709 Query: 822 -LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P ++L E+ + + R ++ R IGIS LDDFGT S L+YL +P Sbjct: 710 PGVLPGDLELEVLETSALNDINRVSTIINECRDIGISFALDDFGTGYSSLTYLKQLPAHL 769 Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + + ++IL ++ +A IA+ + + L MGC+ Q Sbjct: 770 LKIDRSFVCDMLDDLEDLSILEGVLGLANAFRCQTIAEGVESVAQGEMLLMMGCELAQGY 829 Query: 939 HVASPLGFNSILKLLKERFP 958 +A P+ + I + P Sbjct: 830 VIAKPMQAHCIADFIASWRP 849 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 2/162 (1%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 G + + +I ++ + + S + + G+ W+W++ Sbjct: 137 GGITLQAIIILGLVFSIHRGLKLRDELSSQRQSLRNIIWGTDVGTWEWNVRTGEAHLNTR 196 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 A LG + I W Y+H +D + R L Q E R+R + + Sbjct: 197 WAATLGYTLDELQPISIETWWMYVHPDDVERSREALHKHFSGESDAYQCEVRMRHKEGHW 256 Query: 493 HWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 W++ R + + + +G G +ITE+K + +L A Sbjct: 257 VWVLDRGKVVAWSESGKPEWVSGTHTEITEKKAAEGSLLQAA 298 >gi|229020829|ref|ZP_04177538.1| Sensory box/GGDEF [Bacillus cereus AH1273] gi|229027422|ref|ZP_04183670.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228733883|gb|EEL84629.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228740454|gb|EEL90743.1| Sensory box/GGDEF [Bacillus cereus AH1273] Length = 805 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 157/760 (20%), Positives = 300/760 (39%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ + + ++ + + G + ++ Sbjct: 56 ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLAITD 111 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY---------PMVTASIARITLASI 318 +L+ YL + + + + + + ++ + + L Sbjct: 112 YLYFYLQDDLSDRSLVLLRCLYRVFLLFIAIAASISKNASSRRNYFIIDPTFGKKLLVIF 171 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 172 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNRD------LTEMLKVF 225 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + V Q S + + ER D + + + + +L Sbjct: 226 NNQLEQKVSQRTEDLINKSDDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 285 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G DR L LQ + + W + Sbjct: 286 GKNSDELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 342 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT KK + I AF D +T I NR F L ++ + Sbjct: 343 IVPIM-IEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQQELEKSIEHA 401 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 402 RKTQG-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 460 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ + ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 461 IIVHNHT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 519 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + ++ +++DL A+EN+EL+L+Y P + ++ Sbjct: 520 IAMYSAKEKGNNAVCMYDETLSKKITRQLRLEQDLPKALENNELFLLYQPQVDSKTGMVI 579 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I I + L+ R + W + + Sbjct: 580 GAEALIRWQHPELGIISPFEFIPIAEETSQIIPIGKWTLQEACRQLKKWHSA-GYANLKM 638 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + ++I + S I L +E + M + + + L L+ G+ Sbjct: 639 GINLSAIEFEQKDFVQAIISIIEEVGVPASSIDLELTERIAMVDEKETLSKLKALKSYGV 698 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+ +II +A + +I Sbjct: 699 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIENSTDGNEIIHTIISLAHTLNMKVI 758 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + +K L Sbjct: 759 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLS 798 >gi|262376456|ref|ZP_06069685.1| predicted protein [Acinetobacter lwoffii SH145] gi|262308595|gb|EEY89729.1| predicted protein [Acinetobacter lwoffii SH145] Length = 859 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 136/561 (24%), Positives = 262/561 (46%), Gaps = 13/561 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR--VTTTPDIATILGLASGSMHGPIRNWLP 454 S+ V S + ++ D+ +R V P + G + + G +L Sbjct: 291 SRENKESLRLLKRGVEASPNSLFITDVSEERLMVYVNPAFLKLTGYTAAEVLGQSCFFLQ 350 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + + +L V ++ +Q + D+ + W + I P+ + G ++G Sbjct: 351 G--PDTDPDQIALLKQAVKEQKE-IQVTIKSYCKDSSWFWNRLTIGPIFDQTGTCTHFLG 407 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DIT+Q+ E I D+LTG+PN+ +F L + + + + ++ ID+D Sbjct: 408 IQEDITQQRIHEEYIQHQHTHDHLTGLPNQYAFKQILEN-IFEAQHESSQPLVLLYIDLD 466 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K IND LG VGD +L + R+ + ++ ++L R + + F ++L + ++ A Sbjct: 467 DFKNINDSLGHLVGDQILKIVGERLQKFVQGNNVLCRFAEDEFILLLSGTDEHTEVEAIA 526 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++M + + +I ++ASIG + SS SSE++ + LAM AK +G N + Sbjct: 527 GEILDLLSMLFIVDQYKIHLSASIGIVADDSSIHHSSELIYQSVLAMQEAKRQGRNMWQW 586 Query: 695 F----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + D ++ +L A+ L Y P++ + G+EALI+W HP+ G Sbjct: 587 YEKTRMQPVAEIDYTNLRLELMEAINQENFDLFYQPLVHPETGLVTGVEALIRWCHPQQG 646 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 IS + F+ +AE I ++ ++LE+ DI W + I + +NI+ Sbjct: 647 YISPAIFIPLAERTGQIISVGQWVLEKACLDIAEWNK-THNSQITVSVNISPLQFRRAGF 705 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ + + P +K+ +E V++ +R+ +L +R +G+ + +DDFGT S L Sbjct: 706 LQVLEHALELSQLPPELLKIEITEGVIINGADRTIEILKAVRALGVQVAIDDFGTGYSSL 765 Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL +P + +K + S + + AI++SII +A ++ ++A+ + L Sbjct: 766 SYLRRLPINQIKLDRSFIEELTLDGQDAAIVQSIIHLAHQLDLEVVAEGVETFSQASLLY 825 Query: 929 RMGCDYIQDSHVASPLGFNSI 949 + GCD +Q A P N + Sbjct: 826 QQGCDLLQGFFYAKPAPLNEL 846 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 12/157 (7%) Query: 383 GFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSG------DIVWDWDIVRDRVTTTPDIA 435 ++Q + + + + R L S DI+++ D+ + T Sbjct: 150 HIQLLQQAAKLVALAIELDQERQKRHELNEKYSSFYTYHPDIIFELDLQGHVLNTNIACE 209 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 I G + +HG ++ +I + + E + W+ Sbjct: 210 EITGFSKAQIHGQ--HYCAFIPPEFHELANVSFSEAAQGKSQHY--ELPIYNVAGDILWL 265 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + P+ N + IGIA DIT +++ E + Sbjct: 266 DLTNLPII-QNQKVTGIIGIARDITVSRENKESLRLL 301 >gi|324327415|gb|ADY22675.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 825 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 154/774 (19%), Positives = 302/774 (39%), Gaps = 54/774 (6%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ + + ++ + + G + S+ Sbjct: 81 ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + + +S P S + + +I Sbjct: 137 YLYFYLQDGLSYRSLILLRCLYRVFLLFI-AISATIPRSATSRRNYFIINPTFGKKLLVI 195 Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 + I + + ++ + + V ++I + Sbjct: 196 F-----------------PYLAVAILIGFTLKEQTASSTLITGNCIAFVFVLIRHTIVRM 238 Query: 388 QHV-------LATGYFSQG--------------IFSDGERQSLAVLGSGDIVWDWDIVRD 426 Q+ + Q + + ER D + D Sbjct: 239 QNKDLTETLKMFNNQLEQKVSKRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDSNGT 298 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + + +LG S ++ G D+ L +G R + RV+ Sbjct: 299 VLNINQSGSMLLGKDSAALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVK 354 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + G + DIT K+ + I AF D +TGI NR Sbjct: 355 NNNEKDIHFWYVTIVPIMIEGQTFGSYIMVKDITRMKQQQDEINYLAFHDTVTGIGNRIF 414 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F L ++ + + ++ ID++++K IND LG A+GD VL + R L Sbjct: 415 FQQELDRSIERVQKTQD-KFGLLYIDLNRFKNINDTLGHAIGDKVLKEVANRFRTCLPPT 473 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 +AR+ G+ F II+ ++ ++ D + + P + + ++ SIG A + Sbjct: 474 IHIARIGGDEFAIIVHNKT-EQQLLDLCERLFRITEEPFVINQHSFYLSLSIGIALYPFG 532 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724 ++ +L++A++AMY AK G N V + S + R+ +++DL A+EN+EL+L+Y Sbjct: 533 GTNATTLLQHADIAMYSAKEEGSNAVCIYDETLSQKITRRLQLEQDLPNAIENNELFLLY 592 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P + +++G EALI+W HP+ G IS EF+ IAEE I +I + L++ + Sbjct: 593 QPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQQACSQLKE 652 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + + IN+++ + + + + + I + + I L +E + M + + + Sbjct: 653 WHSA-GYTNLKMGINLSAIEFEQKDFVQTIISTIEEIRVPANLIDLELTERIAMVDEKET 711 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 L L L+ G+ L++DDFGT S L+YL P DT+K + + I+++I Sbjct: 712 LLKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 771 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +A + +IA+ + + + L + C IQ + + P+ + LK L + Sbjct: 772 ISLAHTLNMKVIAEGVETKKQLTVLQQNACYLIQGYYYSKPVNEDEFLKFLSKE 825 >gi|71907306|ref|YP_284893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846927|gb|AAZ46423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 996 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 146/566 (25%), Positives = 265/566 (46%), Gaps = 16/566 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + ERQ L + D V D R VT + TI G + + G + Sbjct: 439 ERYEAEERQRLITHFFDHANDAVLILDAERQVVTLNKAVTTISGYSLDDLKGRPPRF--- 495 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +D S +G + E + D + I + N G ++ + Sbjct: 496 MLEGYQDKVSLDELSLALNEQGVWRGEMKAVRKDGSLLPIYCNISSIRNDAGKVVNWAVF 555 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D++E+K + I D LT +PNRQ F + L + + +++ID+D+ Sbjct: 556 VTDLSERKAAEARIESLTHVDQLTELPNRQGFSRIMGEWLAAAR-----KGALILIDLDQ 610 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 ++ND G A GD +L ++ R+ ++L+ D L RL G++FG++L + A Sbjct: 611 LSRVNDAFGHAAGDAMLRRISVRLRKILRDGDFLGRLGGDQFGVLLAQGIRPVVAEVVAR 670 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +IA P+ + +I TAS G S + +L+NA+ A++HAK G N F Sbjct: 671 KLLDAIAQPVMIEGSDIVTTASAGICLLGSDGHDVASLLRNADNALHHAKDSGQNAFRFF 730 Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++ ++R+ ++ DL A+ +EL L Y P + + EI+G E+L++W HP+ G +S Sbjct: 731 SADMNVRMAERLRLESDLRWALSRNELLLHYQPQVDINSGEIIGFESLLRWQHPELGMVS 790 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ +AEE +I I ++LE R +W+D P + + +N+++ ++ Sbjct: 791 PVNFIPLAEESRLILPIGTWVLEEACRQNKAWQDAGMAPKV-VAVNLSAVQFHGADIVAL 849 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + + + ++L +ESV++ +PER ++ L+ +G+ L++DDFGT S LSYL Sbjct: 850 VSQSLQNSGLEARYLELEITESVIIEDPERVIRIMDELKMLGVGLSIDDFGTGYSSLSYL 909 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P D +K + S + AI+R +I +A+ +E +IA+ + ++ L Sbjct: 910 KRFPIDKIKIDRSFVRDLEHNTNDAAIIRMVIGIAEELERKVIAEGVETVEQLEFLRSHH 969 Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957 CD Q + + + I L+ R Sbjct: 970 CDEYQGFYCSPGVPAGEIPDLVASRQ 995 Score = 54.6 bits (130), Expect = 8e-05, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 51/192 (26%), Gaps = 11/192 (5%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT------VIQHVLATGYFSQ 398 + + + A +G ++ + ++ LA Sbjct: 262 FPFVVIVGLAEAEVLAEWRRRAVVYAFLGIVLAVALIALMRSWGMGYRQAEALAEKLAKD 321 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E ++L + D W D + GL + G + L Sbjct: 322 FADKTREGRAL-LDSIPDPAWLLDNEGHYLAVNEAFCHYKGLPMEQVLGHTVDELF---P 377 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + V + G ++ + + P+ +G G+A D Sbjct: 378 AEEAKVLRDGQLEVYRKGGPVREVVWLHLR-GKLSPFEFLRVPVYRDDGQPRGLAGVAWD 436 Query: 519 ITEQKKSLEGIL 530 +TE+ ++ E Sbjct: 437 MTERYEAEERQR 448 >gi|73541330|ref|YP_295850.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134] gi|72118743|gb|AAZ61006.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134] Length = 879 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 150/626 (23%), Positives = 270/626 (43%), Gaps = 18/626 (2%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 +P + L F+ + + + I A L+V L+ +++ + ++ Sbjct: 263 GYYRMPEFGLNFVVGESVGLVLAPYEVYRRIALAGAMASTLLVGLLYYSLRRSMVERRRH 322 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + +L S + + + + P A G + G + Sbjct: 323 LEEMRLA----ALVYSSSSEAMMVTSVDGTIIDANPAFAAATGYTVEEIKGRSGYGISGA 378 Query: 457 HIND--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + R L +GR EF +R D + + R + Sbjct: 379 GNAAGLVERLRATL-----GAKGRWSGEFSIRRKDGSEFPAYLTVDTYLAHQYGEHRRVA 433 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + +D+TE++++ E I A D LT +PNR+ F +RL ++ S ++ ++ ID+D Sbjct: 434 LIHDMTEKRQAEEVIRHQANFDALTDLPNRRLFFERLEQEIERSRGTQDV-LALLFIDLD 492 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K++ND LG GD +L+ RRI ++ D +ARL+G+ F +IL + ++ A Sbjct: 493 RFKEVNDTLGHDQGDLLLLEAARRIAASVRASDTVARLAGDEFTVILPAVGDAGVAGGIA 552 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 A+ + IA P L + V+ASIG A++ + +L A+ AM+ AK G N + Sbjct: 553 EAILQQIAAPYRLAGELVVVSASIGVATYPKDADNAEALLVYADHAMFAAKEEGRNRWKI 612 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + +R+ I +DL A+ + + L Y PI+ L ++ EALI+W+HP G I Sbjct: 613 FTQALLQAERERLRITQDLRTALASEQFALHYQPIVDLRTGKVCKAEALIRWNHPVRGPI 672 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-C 811 +F+ +AEE +I I ++L R + W I +N + + Sbjct: 673 HPVDFIAVAEESGLIIDIGRWVLTEALRQLARWHVLLGK-DFQISVNKSPMEFCAPSSGP 731 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E ++I + + + +E+ +M L R + GI + LDDFGT S LS Sbjct: 732 ESWSSMIERRNVPVGSLVIEITENSLMEQNADVMDQLSRFQAAGIEIALDDFGTGYSSLS 791 Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL + D +K + S + T +A+ R+II MA + +IA+ + + L Sbjct: 792 YLRRLDIDYIKIDRSFIRSLTRGPDDVALCRAIINMAHALRIRVIAEGVETQSQRDILLA 851 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 GCDY Q P+ ++ + Sbjct: 852 AGCDYGQGHFFCPPVEASAFEAFVSA 877 >gi|332993532|gb|AEF03587.1| Diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2] Length = 877 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 127/580 (21%), Positives = 252/580 (43%), Gaps = 16/580 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 +I+ + + E R + + + + D + + I G Sbjct: 287 LALIEQTASLASIAIEKNRSEETLKRAASVFTHANEGIIITDASATIIEVNDTLCRITGY 346 Query: 441 ASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + + G R H F + + + G + E D + + ++ I Sbjct: 347 SKSEVLGKNPRILQSGRHS---AQFYKNMWNTLNTD-GHWRGEIWNCRKDGEVYPEMVTI 402 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + ++ G + Y+ ++ DI+E K + + A D LT +PNR RL + S Sbjct: 403 SAVKDAEGQVQHYVSLSTDISEIKLNEGKLERIAHYDLLTNLPNRVLLAKRLNQAIKHSQ 462 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 N V +D+D +K IND G +GD LV ++ + L+ D +AR+ G+ F I Sbjct: 463 LQQN-SLAVAFMDLDGFKAINDNYGHDIGDQFLVEVSNGLKASLRAGDTIARIGGDEFII 521 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I+ + + + KS + P+N+ E + V+ASIG + + + +++++A+ Sbjct: 522 IMANLDEFSDCEHVLNRLLKSASAPVNIAEAVMQVSASIGVTVFPQDNVDADQLIRHADQ 581 Query: 680 AMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G N F + + +++ +A++ E L Y P + + E++G Sbjct: 582 AMYVAKQGGKNRYHQFDLEQDNAINSYNKSIDNVRVALDRKEFVLHYQPKVNMRSGEVIG 641 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 +EAL++W+HP+ G I EF+ + E + + ++++ I W+ + + + Sbjct: 642 VEALLRWEHPESGLIPPLEFLPVIEGHGISLKVGEWVIDAALTQISHWQRRG--ISLPVS 699 Query: 798 INIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +NI++ L + +Q L++ P ++L E+ + + + + +G+ Sbjct: 700 VNISAHQLQQDNFTSRLQTLLAAHPDVDPGYLELEILETSALQDTFQVSSTMNACHDLGV 759 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 S LDDFGT S L+YL +P +K + S + +AI+ ++ +AK + +I Sbjct: 760 SFALDDFGTGYSSLTYLKRLPAYLIKIDQSFVRDMLDDTDDLAIVEGVVGLAKAFKREVI 819 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + L +GC Q +A P+ N + + L Sbjct: 820 AEGVESVEHGVALIHLGCVLAQGYGIAKPMPANQVSQWLT 859 Score = 44.2 bits (103), Expect = 0.11, Method: Composition-based stats. Identities = 13/123 (10%), Positives = 43/123 (34%), Gaps = 4/123 (3%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + S D V+ D + ++ ++ + G + I+ + Sbjct: 30 LDISADPVFIKDGEGKLLVANNAFCELVNVSRKKLIGK--TFSNKIYPQELVKLAHSDQY 87 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + ++ E ++ NQ ++ ++ + N +G+ D+T+++++ Sbjct: 88 VLDTGEDKV-IEQALQGKGNQARVVLAKLSRFIDRNNR-RFIVGVIRDVTKRRQNELRET 145 Query: 531 CNA 533 + Sbjct: 146 TRS 148 >gi|157737133|ref|YP_001489816.1| EAL/GGDEF/PAS domain-containing protein [Arcobacter butzleri RM4018] gi|157698987|gb|ABV67147.1| EAL/GGDEF/PAS domain protein [Arcobacter butzleri RM4018] Length = 826 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 143/573 (24%), Positives = 272/573 (47%), Gaps = 12/573 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 L I+ + ++ + T S ++ AV S + + D R+ + Sbjct: 257 NLSFILFVASIFLLCSFIYTYQKSLKTKNELNAFKYAVANSDNSIVITDENRNILYVNEA 316 Query: 434 IATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 G M G R + F +++ + R + EF+ + + + Sbjct: 317 FEKATGYTKDEMIGQNPRILKSGLLP---AEFYKNINAILD-RGEKWIGEFKNKKKNGEI 372 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 ++ I P+ + +I Y+ I D+T+ K E + A+ D+LT +PNR+S ++ Sbjct: 373 YYETASITPIILNE-NIKGYLAIKLDVTDYIKEKEKVEFLAYHDSLTMLPNRRSLQIKVE 431 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 I++ S ++ + ++ ID+D +K INDVLG GD +L ++ R + ++ R+ Sbjct: 432 KIIEDSFKNNK-KFALLFIDLDGFKVINDVLGHDTGDKLLKEVSLRFKNIFDGNSLVFRI 490 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F II EN+ I A + K++ I + + + SIG A + Sbjct: 491 GGDEFAIIFEYEND-DLIILNAQYIIKNLNETIVIGNNSLHIGCSIGIARYPLDGDDLVS 549 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 +LK ++ AMY AK + N E + S R+ I++ L A+EN E YLVY P L Sbjct: 550 LLKYSDTAMYKAKQKSKNRYEFYTEDLTKTVSSRLKIEQALSKALENEEFYLVYQPKYNL 609 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 +EI +E L++W +P GN+S EF+ IAEE+ +I + F+ ++ D + +++ N Sbjct: 610 KTKEIFSVETLLRWKNPILGNVSPDEFIYIAEEIGLIHELGFFVFKKACEDFVKLQNKIN 669 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + I IN+++ L+ + + ++ ++ +T I + +E+ + N + + L Sbjct: 670 IQ--MITINVSTLQLVRSNFIDEIKKILIQTNIDTINIGIEITETYFIENMKDTEKSLNE 727 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIE 910 L+ +G + +DDFGT S L YL +P D +K + S ++ + +I+R+I+ ++K+ Sbjct: 728 LQNLGFKILIDDFGTGYSSLQYLQKLPIDIIKIDKSFVSSLDDNNDSIIRAIVALSKSFN 787 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 T +A+ I + +L +G D+ Q + P Sbjct: 788 YTTVAEGIETKEQEDKLIELGVDFGQGYLFSKP 820 >gi|30262524|ref|NP_844901.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47527823|ref|YP_019172.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49185366|ref|YP_028618.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|30257156|gb|AAP26387.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47502971|gb|AAT31647.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179293|gb|AAT54669.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] Length = 912 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 155/754 (20%), Positives = 304/754 (40%), Gaps = 20/754 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 165 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 220 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 221 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 279 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + + L L + + Sbjct: 280 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 339 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q S + + ER D + D + + +LG S Sbjct: 340 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 399 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G D+ L +G R + RV+ + + + Sbjct: 400 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 455 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G + DIT+ K+ + I AF D +T I NR F L ++ + Sbjct: 456 MIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQG 515 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ ID++++K IND +G ++GD VL + +R L LAR+ G+ F +++ + Sbjct: 516 -EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVHN 574 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 575 HT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 633 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + +++G EAL Sbjct: 634 AKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEAL 693 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G IS EF+ IAEE I +I + L+ + + W + + IN++ Sbjct: 694 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACQQLKEWHSA-GYSNLKMGINLS 752 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + ++I + + I L +E + M + + + L L+ G+ L++D Sbjct: 753 AIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSID 812 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P DT+K + + I+++II +A + +IA+ + Sbjct: 813 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVE 872 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C IQ + + P+ + + L Sbjct: 873 TKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 906 >gi|126651781|ref|ZP_01723983.1| sensory box/GGDEF family protein [Bacillus sp. B14905] gi|126591459|gb|EAZ85566.1| sensory box/GGDEF family protein [Bacillus sp. B14905] Length = 573 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 137/561 (24%), Positives = 242/561 (43%), Gaps = 37/561 (6%) Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSF 471 S IV D I + G L H + FR + + Sbjct: 28 NSSIIVAITDRTGKITFVNDHFCKISKYTREELVGQDHRLLNSGYHP--KSFFREMWRTI 85 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 E RA D +W+ I P + G +YI I DIT QK ++ I Sbjct: 86 --GNGEMWNGEVCNRAKDGSLYWVKTTIFPFLDERGKPYQYIAIRVDITAQKD-IKKITH 142 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 A+ D LTG+PNR+ RL S + + ID++++K IND LG +GD Sbjct: 143 IAYHDELTGLPNRRKLEQRLENEFHQSRRTGE-KFALFFIDVNRFKHINDGLGHIIGDMF 201 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 LV ++ R+ + + R + + F +IL N+ +I + A + + E Sbjct: 202 LVEMSNRLRNIDYTSNSFYRHNSDEFVMIL---NDVNRIEEMAKEIISVFNESFVVDNYE 258 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 + SIG + + T E+LKNA++AMY AK GN +R + ++++ Sbjct: 259 FYASISIGISIFPDHANTVEELLKNADIAMYAAKSTRGNQYRLYRDNMDEANDKWLLLET 318 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L A++ L L Y P I L + I+G+EAL++W P+ G+I F+ AEE +I Sbjct: 319 KLHQALKKDLLELHYQPKIDLKTDTIIGMEALLRWYDPELGHIPPDRFIPFAEECGLIND 378 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I +++L + W + + + + +NI+ + + + ++ +I+ T P ++ Sbjct: 379 IGVWVLGKACAQAKLWNES-HRLRLRVAVNISPIHISTSGFVDMVKGVIAGTGIDPHLLE 437 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 + +E ++ E + +LR +GI+++LDDFGT S L+YL P D +K + + + Sbjct: 438 IEITEMSMLDYTEDLINTINQLRALGITISLDDFGTGYSSLNYLKKFPVDVLKIDRAFVR 497 Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID-----------IKELTRMGCDYIQ 936 ++ A++ ++I +A + + L GC+Y+Q Sbjct: 498 DIVPEKSGIAMISAMISLAHALNL-----------QVVAEGVEEEAELNVLREHGCEYVQ 546 Query: 937 DSHVASPLGFNSILKLLKERF 957 + + PL L+ + F Sbjct: 547 GYYFSKPLSVEDFTNLIVQSF 567 >gi|209886005|ref|YP_002289862.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans OM5] gi|209874201|gb|ACI93997.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans OM5] Length = 907 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 143/623 (22%), Positives = 275/623 (44%), Gaps = 35/623 (5%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 I+I ++ + +V+++ F V + + Q + + Sbjct: 299 IVIIATKTVDAALKDWYEQIRMLVLIAFSASMAVVLIVWFIVRRLMSQHQAARQRLMLEK 358 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHINDRD 462 +R AV + +D V A I L + +R+ + + R Sbjct: 359 QRLDTAVNNLKQGLLLFDANHRLVVVNRRYAEIFHLPRRDIAPGCSLRDIMELLRR--RG 416 Query: 463 NFRTILDSF------VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 F+ ++S+ + G L E D + + S G ++ Sbjct: 417 MFKGDIESYCLNALNLASDSGSLTTEI----PDGRIIHTNFQAI----SGG---GWVSTF 465 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE++++ E I A D LT +PNR F D L T+L S V+ ID+D++ Sbjct: 466 EDITERQRTEERIAHMARYDALTDLPNRTMFRDHLETMLRQSE-----PLAVLSIDVDEF 520 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND LG VGD++LV++ R+ + ++ D++ARL G+ F I+ + Sbjct: 521 KQVNDTLGHFVGDELLVAIAGRVSDCMEPGDLVARLGGDEFAIVRHGVRERADLIPLIER 580 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + +I +P + + + V ASIG A +L+NA+LA+Y AK G F Sbjct: 581 VHAAIRLPYSCVGHRLNVDASIGVAVSPCDGSELEGLLRNADLALYAAKGSGRRTYRFFE 640 Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + ++ ++ A+ E + Y P + + + ++G EAL++W HP+ G IS Sbjct: 641 PEMQVRAQKRHDLEMEIRSALARQEFEVYYQPFVDIKTKTVLGAEALVRWRHPERGLISP 700 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++F+ IAEE +I + ++L+ +W ++ + + +N++ + L + Sbjct: 701 ADFIPIAEETGLIDQLGSWVLKTACHAAANWPER-----VRLAVNVSPVQFKGHTLALNV 755 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A + + +R++L +E+V++ + E + +L LR +G+ + LDDFGT S L YL Sbjct: 756 AAALGSSGLPANRLELEITEAVLIRDDEEALAILHELRGLGVRIALDDFGTGYSSLRYLQ 815 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFD +K + ++ E I+++++ +A T A+ + + L R+GC Sbjct: 816 LFPFDKIKIDRCFISNINEPHGASHIVKAVVDIAAARNMTTTAEGVETAAQLDALRRLGC 875 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 D +Q + P ++ ++ Sbjct: 876 DQMQGYLFSPPQTEEALAHIVAS 898 >gi|109899742|ref|YP_662997.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] gi|109702023|gb|ABG41943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudoalteromonas atlantica T6c] Length = 684 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 136/574 (23%), Positives = 263/574 (45%), Gaps = 17/574 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + D+ + + + + LG + G Sbjct: 122 DLADVRQAQAQAKFKDNMLEAVFEATPDLFFLMEEDGTIIDSHGGDDKYLGASPSECVGR 181 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L T+ + V + G +E+ + D + R+ + N Sbjct: 182 TITDLF---PRKVARKYTLFNKRVIEQEGISTFEYELTLPDG-IRYFEARLSHVKAYN-- 235 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + I DITEQ K+ + I +A+ D+LT +PNR LDRL+ +L + ++ + + Sbjct: 236 --QIVVIVRDITEQHKAAQTIRHHAYYDSLTLLPNRFLSLDRLSQMLKEAQRNEE-KAAL 292 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D +KK+ND LG VGD +LV ++ L+ D + RL G+ F ++L + + Sbjct: 293 LFLDLDDFKKVNDSLGHEVGDKLLVEAANKLTLALRKADTVGRLGGDEFIVLLRALADDN 352 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + A + + P + +E+ +T SIG ++ + ++S++L++A+ AMY +K G Sbjct: 353 DAKEVAENLLRVFRDPFLIDGKELILTLSIGIVTYPENGSSASDLLRHADAAMYQSKLSG 412 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N F I+ L A++ E + Y P + + ++G EALI+W + Sbjct: 413 RNTYSFFTKEMNAIMLRRFEIEGQLNQALQRKEFEVFYQPKFSVQNRNVIGAEALIRWRN 472 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P GN+ EF+ IAE +I I +++E+ + W + I +N++ + Sbjct: 473 PILGNVPPDEFIPIAEHTGLIVPIGKYVIEQALEFLREW-ASIHNKNYTIAVNLSPRQFR 531 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D EL + + +SK SP ++ +E V+M L L ++G+ L++DDFGT Sbjct: 532 DKELINFILSALSKEEISPQNLEFEITEGVLMVGNAYVEEALEELHQLGVKLSMDDFGTG 591 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL FD +K + S + G ++ ++++ I MA +++ ++A+ + + Sbjct: 592 YSSLSYLRRYSFDILKIDRSFIDGITVNKEDFDLVKATIAMAHSLDLEVVAEGVETHEQL 651 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 L ++GCD +Q + + P+ +++ R+P Sbjct: 652 MLLDKLGCDLVQGYYFSKPVPAQALIDY---RYP 682 >gi|148547279|ref|YP_001267381.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148511337|gb|ABQ78197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida F1] Length = 699 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 147/571 (25%), Positives = 248/571 (43%), Gaps = 15/571 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLA 441 ++Q +SQ + + + V D+ R+ + G Sbjct: 129 ELELLQAKELAEQYSQEMAKLSQFLDSVIANIPASVIVQDLESQRILLANQQAERLFGGP 188 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 SM G + + D +G E RV A + R Sbjct: 189 QRSMIGQLP--RECLAPAAGDYLEQQFVRGARSTKGH-AAETRVDTARG-PRTLRSRTLL 244 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N G + +A D TE+ + I A D LTG+PNR F +RL L + + Sbjct: 245 SQNREGQADYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSEN 304 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 L + +D+D +K IND LG A GD +L L +R+ L+ D LARL G+ F ++L Sbjct: 305 AKLTAALC-LDLDNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVL 363 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A + K+I+ P + + V SIG A + ++L A++A+ Sbjct: 364 TGLEGRDAACNTAQRLIKAISPPFQIEGHQFVVGVSIGIAIAPDDNDQAEQLLGYADMAL 423 Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N E F V R +++ DL A+ +L L Y P++ + G E Sbjct: 424 YQAKRNGRNRYECFDVELDVAARQRRLVETDLRTALHLGQLQLHYQPVVDHQTSSVTGYE 483 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP G + +F+ IAEE +I + L ++ SW + + +N Sbjct: 484 ALLRWEHPTRGMVMPMDFIPIAEETGLIHELGNRALNLACQEAASWDSEQ-----TVSVN 538 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++ + +L + ++ + P R++L +ESV++GN E + L L+ +G+S++ Sbjct: 539 LSAVQFKNGDLVHTVALALADSGLPPQRLELEITESVLLGNSEENVRTLRALKDLGVSIS 598 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKD 917 LDDFGT S L YL PFD +K + S + + R A I+R+I ++ ++ A+ Sbjct: 599 LDDFGTGYSSLGYLRSFPFDRIKIDKSFVHDMCDSREAMSIIRAITELSNSLMIKTTAEG 658 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + E ++ L GC + Q P + Sbjct: 659 VESEEQMRRLAAEGCSHFQGYFYGRPAPASE 689 Score = 52.6 bits (125), Expect = 4e-04, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 7/128 (5%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF- 464 L + D ++ P G + + G + D + Sbjct: 11 YRLLIQSVVDYAIYLLTPEGIVANWNPGAQRAKGYRAEEIVGQHYSLFYT----DAERVA 66 Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 L+ GR + D + I + + G ++ + + DI+E+ Sbjct: 67 GLPALNLEQARSTGRFEETGARLRKDGTVFHAHVVIEAVYDDTGQLVGFAKVTRDISERH 126 Query: 524 KSLEGILC 531 + +L Sbjct: 127 RQELELLQ 134 >gi|319956972|ref|YP_004168235.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Nitratifractor salsuginis DSM 16511] gi|319419376|gb|ADV46486.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitratifractor salsuginis DSM 16511] Length = 747 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 136/552 (24%), Positives = 256/552 (46%), Gaps = 12/552 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468 + + ++ V ILGL ++ G + ++ + + L Sbjct: 197 IFEDATEGIFITSYDGSYVEANEAFYHILGLEDKALPGIRLDDFQSLVDPRTYQHIVQSL 256 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + E ++R + + I + N G++ + + DI+E ++S E Sbjct: 257 EI-----DKSFHGEVQIRNESGHDKLIWLTIDTIYNEYGEVEYRVAMLTDISELQRSREK 311 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LT +PNR +RL +L+ S ++ + + ID+D +K IND +G AVG Sbjct: 312 LRYTATHDILTRLPNRALLFERLDEVLNQSQSNGS-EGALFFIDLDNFKIINDTVGHAVG 370 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D VLV RI +++ DI RL G+ F +I+ + + A + + I P+ Sbjct: 371 DKVLVECVERIMRVIRREDIFGRLGGDEFLLIVENIKDHDVPMYLAQKILEEIRKPMEFE 430 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706 ++ASIG A + + E+++ A++AMY AK G N + ++ Sbjct: 431 GERFEISASIGIAVFPKDSLEREELIRFADMAMYRAKQEGKNRFCYYSTKMDQAIRKYHQ 490 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 I+ L A+ + YL+Y P + + +IVG+EAL++ D + + SEF+ IAEE + Sbjct: 491 IERQLKEALNSEGFYLIYQPQVDIASGKIVGVEALLRVDEYIALDFNPSEFIPIAEESEL 550 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I ++ R + W D++ P+ + IN++ + LLD E + +I+ P Sbjct: 551 INRIGEWVFHESCRQVRHWLDESGTAPL-VAINLSRRRLLDEYFPERLTEIIAGYDLEPC 609 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 +L +E++ E + ++ RL+++G + +DDFGT S L+ L + D +K + S Sbjct: 610 HFELEITETIFSQMSESNCQVISRLQEMGFLIAIDDFGTGYSSLANLKHFNVDKLKVDRS 669 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 ++ E AI + + +A ++ +IA+ + ++ L MGCD +Q + P+ Sbjct: 670 FVSDIAKNESDRAITEASVNLAHSLGLKVIAEGVETREQLEILREMGCDEMQGHLFSPPI 729 Query: 945 GFNSILKLLKER 956 I +++ E Sbjct: 730 PPEKIQQMILEH 741 >gi|54292994|ref|YP_125409.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens] gi|53752826|emb|CAH14260.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens] Length = 976 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 138/576 (23%), Positives = 270/576 (46%), Gaps = 11/576 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ ++ + + + + A+ S +V D + G + Sbjct: 407 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 466 Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G R ++ + + E + + W+ I P+ N Sbjct: 467 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 522 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 N +I Y+ + D+T++K E + A DNLT +PNR +++L ++ S ++ Sbjct: 523 ENEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERVISKSHINNQ- 581 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + V+ +D+D++K+IND LG A+GD +L +L+ R +++ D +ARL G+ F +IL + Sbjct: 582 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 641 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A R+ + P + +E+ V+ SIG A + + +++NA+ AMY + Sbjct: 642 MQDKDAEIIAKKCREICSQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTAMYQS 701 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG N+ F+ + ++ + IK +L A +ELY+ Y PII L + ++V EAL+ Sbjct: 702 KIRGKNNWTVFQNTMIEGANNHIRIKTELDQAFTRNELYICYQPIIELKENKVVAAEALL 761 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W + G I+ + + +AEE MI + ++L+++ W I + +NI++ Sbjct: 762 RWQNTTLGQINPDQIISLAEETGMIIPLGYWILDKVCAQAKEWEFITG-SKIKVAVNIST 820 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + +Q ++ +T S + +ES + + + L +L +GI +LDD Sbjct: 821 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDMGIHFSLDD 880 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FG S L Y+ PF +K + + + +++++ SII MA+N++ ++IA+ I Sbjct: 881 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNQLSLINSIITMARNLKLSVIAEGIET 940 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ + M CD +Q + + PL + L L + Sbjct: 941 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFYLMNK 976 Score = 63.0 bits (152), Expect = 3e-07, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I + Q + + + ER + D ++ ++ + L Sbjct: 283 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVTDGIFIHNLQGAFLEVNEAACLSLN 342 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498 + + + + L+ ++G + E R D + +R Sbjct: 343 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGSINTEGMHRRKDGTTFPVDVR 396 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + N+ G+ L + I DIT QK+S I Sbjct: 397 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 428 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 50/170 (29%), Gaps = 12/170 (7%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 +++ F I +L + + + +GD V + P Sbjct: 152 FEILMPFFKDILGLLNLSLAKLMNKKREKLLTTILEKAGDSVEITNEEAVIQYVNPAFEN 211 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I + L + D F I + + + R R D + Sbjct: 212 ITLYNAREAMNKTVASLLRSPVEDAQLFEEINQTLKSGNT--WKGQIRSRKKDGSYWVAQ 269 Query: 497 IRIRPMSNSN-GDILRYIGIANDITEQ-------KKSLEGILCN--AFQD 536 I P+ + G I ++I I DITEQ K S E A D Sbjct: 270 TIIVPVMDDELGRITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVTD 319 >gi|225865728|ref|YP_002751106.1| sensory box/ggdef family protein [Bacillus cereus 03BB102] gi|225789603|gb|ACO29820.1| sensory box/ggdef family protein [Bacillus cereus 03BB102] Length = 906 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 311/725 (42%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + K + + E + + Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFKCMEKSFIIHEHTLNL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 659 NAIQNEELFLYYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 719 WTLQQACEQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVTFLQKNKCQFIQGYYYSKPIHINAFT 897 Query: 951 KLLKE 955 +LLK Sbjct: 898 ELLKS 902 >gi|119487305|ref|ZP_01621056.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119455860|gb|EAW36995.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 2038 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 154/622 (24%), Positives = 278/622 (44%), Gaps = 48/622 (7%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ------GIFSDGERQSL 409 + L+N++I A V ++ L+ + + + + + ++ + Sbjct: 1439 LIGLLYLENNLICDAFQAERVELLNLLSTQMAIAIENSRLVQHQEELNNSLQQERQQITR 1498 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + D D V IL S + G + + Sbjct: 1499 ILERITDGFIGIDRQWKIVYINQKAEQILEKKSQQIKGKT-----------------LWE 1541 Query: 470 SFVGYRRGRLQYEFRVRAADN-----------QFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + ++R +W+ I + P + G + D Sbjct: 1542 ACSETMTLLHEQQYREAQETGQSVCFEAFYSSSNYWLEITVYP--DQEGLSIF----FRD 1595 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT +K+ E ++ +A D LTG+PNR + L ++ + + N R V+ +DID++K Sbjct: 1596 ITGRKQMEEKLISDAQHDALTGLPNRLLLSEHLQQMIQRTQEEQNYRYAVLFLDIDRFKV 1655 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IN+ LG VGD +L+++ +R+ + DI+ARL G+ F I+L +N A ++ Sbjct: 1656 INESLGHLVGDQLLIAIAQRLKGCITQQDIIARLGGDEFIILL---DNPEDEVRTAARIQ 1712 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696 ++ P NL ++ T SIG S ++ E+L++A++AMY AK G F Sbjct: 1713 MALNAPFNLNGYKVFNTVSIGIVSSNTTYTRPEELLQSADIAMYQAKAEGRARYVIFDTT 1772 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + + ++ DL LA+E +L + Y PI+ L ++ G EAL++W HPK G IS + Sbjct: 1773 MQERATSLLQLETDLRLAIEVEQLCVYYQPIVALKTGKLAGFEALVRWLHPKKGIISPIK 1832 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I I ++L++ + W++Q + + +N++ K +L + Sbjct: 1833 FIPLAEETGLIIPIGQWVLQQACYQLKVWQEQFPQLEKLTMSVNLSVKQFSQVDLIPRID 1892 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++S +KL +ES +M N ER+R LL +L+ I L +DDFGT S LSYL Sbjct: 1893 QILSDLDLPGHDLKLEITESALMNNFERTRELLLQLKSRQIQLCIDDFGTGYSSLSYLHQ 1952 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + S + + K I+R+II ++ N+ IA+ I + +L C+ Sbjct: 1953 FPVDILKIDRSFVRRLEGSNKNDEIVRTIIALSHNMSIAAIAEGIETSQQLAQLRNYRCE 2012 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 Y Q PL + + + Sbjct: 2013 YGQGYFFDRPLDALAATDFIAQ 2034 >gi|187927096|ref|YP_001893441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] gi|187728850|gb|ACD30014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Ralstonia pickettii 12J] Length = 887 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 149/595 (25%), Positives = 253/595 (42%), Gaps = 13/595 (2%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRD 426 I + ++ L + D R + L S + + + Sbjct: 293 AYRRTALAGAIGSTLLMALLYATLRRSMSQRKQHIDEMRLASLVYASSSEAMMVTTLDGT 352 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + P G + G + + + + + V + G E+ +R Sbjct: 353 VIDVNPAFTVTTGYTAQEFKGQHSDAIRSECND--SAVVDTMRTAVTTK-GTWSGEYLIR 409 Query: 487 AADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 D ++ + + G R + + +DITE+K++ E I A D LT +PNR Sbjct: 410 RKDGTEFPALLTVDTFAGHKLGAPSR-VALIHDITEKKRAEEVIWRQANFDTLTELPNRH 468 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F +L + + ++ ID+D++K++ND LG GD +L + RRI +++ Sbjct: 469 MFYAKLRQEILHARQAATA-VALLFIDLDRFKEVNDTLGHDQGDVLLKEIARRISAIVRG 527 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D +ARL G+ F IIL + ++ A ++ IA P+ L E + VTASIG A + Sbjct: 528 TDTVARLGGDEFTIILPNLPDAGAAAPIIRSLLARIATPVQLGEESVEVTASIGLALYPR 587 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723 + +L A+ AM+ AK G N F + R +R+ I DL +A+E +L + Sbjct: 588 DADNAESLLVRADQAMFAAKSAGRNQWSVFTPALQRAEQERLRITSDLRIAIEQKQLAVH 647 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI+ L I EALI+W HP G I ++F+ +AEE +I I ++L ++ Sbjct: 648 YQPIVDLRSGAINKAEALIRWTHPVRGEIEPADFIPVAEETGLIVQIGKWVLNEALTEVT 707 Query: 784 SWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W + + +N + + L + ++ + P + + +E +M Sbjct: 708 RWHTVLGRH-MQVSVNKSPVEFRAAGQLGDSWADVVKRRAIRPGSLVIEITEGALMEGSA 766 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 L RLR+ GI + LDDFGT S LSYL D +K + S + K IA+ Sbjct: 767 EVVDHLTRLRQAGIEIALDDFGTGYSSLSYLKRFDIDYIKIDQSFVRSLAHDPKDIALCS 826 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +I+ MA + +IA+ I E L GCDY Q P+ + + + Sbjct: 827 AIVSMAHALRIKVIAEGIETEEQKAILVAAGCDYGQGHLFCPPVPPAAFEAFVAK 881 >gi|239816552|ref|YP_002945462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Variovorax paradoxus S110] gi|239803129|gb|ACS20196.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Variovorax paradoxus S110] Length = 1107 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 133/441 (30%), Positives = 231/441 (52%), Gaps = 6/441 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++K++ + A D LTG+ NR + L + S + V+ +D+D++K IN Sbjct: 659 QRKQAERSLRFMASHDGLTGLFNRAALQHELARAIKRSNRHQK-QFAVIFVDLDRFKHIN 717 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG VGD+++ R+ LL+ D++AR G+ F ++L + +++ A A + Sbjct: 718 DTLGHGVGDEMIKICGERLTALLREADVVARFGGDEFVLLLENLSSANDAAGLAEKVLAC 777 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698 A P L RE+ V+AS+G + + + + +LKNA+ AMY AK RG N + +++ Sbjct: 778 CAEPFFLAGRELHVSASVGVSIYPDNGADAEALLKNADTAMYRAKERGRNTFRFYAAKMN 837 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++++M++ L A+E EL + Y P + L + IVG+EAL++W HP G I +F+ Sbjct: 838 AQNTEQLMLESALRHALERGELEMHYQPKMDLQTQRIVGVEALMRWHHPILGMIPPVQFI 897 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAEEL +I ++ + LER D SW+ +P + + +N++ + L +QA++ Sbjct: 898 PIAEELGLIVSLGKWALERACADSRSWQK-YGLPKVLMSVNLSPRQFESRTLIADIQAVL 956 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + PS ++L +E VM NPE + LL +R +G+ L +DDFGT S LSYL + P Sbjct: 957 EASGLEPSLLELEITEGAVMANPEHAAKLLRAIRDMGVGLAIDDFGTGYSSLSYLKHFPL 1016 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 TVK + S + A++ II +A + ++A+ I + L GCD Q Sbjct: 1017 STVKIDRSFINDLSQDADARALIDGIITLAHGLRMKVVAEGIETTAQLDYLRSHGCDEAQ 1076 Query: 937 DSHVASPLGFNSILKLLKERF 957 + P+ + + + Sbjct: 1077 GYWLCKPVPADEVRNFMARHL 1097 Score = 77.3 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 21/203 (10%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY--FSQGIFSDGERQSLAVLGSGDIVW 419 + I+ L ++L I+ T + ++ + + + A + W Sbjct: 333 IPWFIVLGGLATSMLLAGIVFSLTTARSRAQILANEMTRHLRTSERQLEEAQHLASLGSW 392 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D + + + ILG +G + + L + +R + R Sbjct: 393 ILDPETGALQCSEEARRILGFEAGHLRPELPALLSRVPAAERPAVEQQIAQA-SRSMERS 451 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 ++E + D W+ + + + +G + G D T +K D L Sbjct: 452 EFEHHLCLPDGTERWLHVIAQS-AEEDGKTM-VRGTVRDATRPRK-----------DAL- 497 Query: 540 GIPNRQSFLDRLTTILDLSATDD 562 RQ R+ +L + Sbjct: 498 ----RQGLEYRIARLLAGDGRAE 516 >gi|22298454|ref|NP_681701.1| hypothetical protein tlr0911 [Thermosynechococcus elongatus BP-1] gi|22294634|dbj|BAC08463.1| tlr0911 [Thermosynechococcus elongatus BP-1] Length = 1240 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 142/569 (24%), Positives = 267/569 (46%), Gaps = 18/569 (3%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + ER + ++++ P L + G ++ Sbjct: 677 RAELVSALHQEKERYRRVLEAQTELLYRCTPEGHLTFGNPAFFRYL-----AEAGMNCDF 731 Query: 453 LPYI-HIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 I H D + F+ L + + E V + Q W R + +G Sbjct: 732 GDVIRHPFDPVTQQRFQQHLQ-ALSPAQPISTIECAVTLSGGQLAWFEWTTRAFFDHHGR 790 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + Y + DIT +K+ E ++ +A D LTG+PNR +RL + V Sbjct: 791 CVEYQCVGRDITCRKQMEEQLIHDALHDALTGLPNRTLLQERLKHCWRQYQRRRDRPFAV 850 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + IDID++K++ND LG GD +L++L +R+ +++ D LARLSG+ F ++ + Sbjct: 851 VFIDIDRFKRVNDSLGHQAGDQLLITLAQRMQTVVRQGDTLARLSGDEFVVLCEDLDPQQ 910 Query: 629 KIADFAIA---MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 +A + + I P+ + ++V+ASIG A +++ +L++A++AMY AK Sbjct: 911 MVAQVQAQVTDLERVIQEPLIIDGHLLSVSASIGVAFSDREATSAATLLRDADIAMYQAK 970 Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +G F ++ + ++ L A+ NSEL + + PI+ + IVGLEAL + Sbjct: 971 KQGLGQWCIFDPQMHTQAQSCFTLESQLHQAIANSELQVYFQPIVEMKTGAIVGLEALSR 1030 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIAS 802 W P+ G IS SEF+ +AE+ +I ++ +LER ++ WR Q + + + INI+ Sbjct: 1031 WFDPEKGEISPSEFITLAEQAGLIVSLGRQVLERAIQEFSQWRQQDSRRQTMTLGINISP 1090 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L+D + A + + P + L +E+ ++ N E + + L+++G++L +DD Sbjct: 1091 QQLVDANFVSDILAALRRAQLPPHLLHLEITETTMIRNLEATLQVAEELQQLGVALNIDD 1150 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LS L +P +K + S + ++ I+ ++I + K++ ++A+ + Sbjct: 1151 FGTGYSSLSRLHQLPIHALKIDRSFVQSLEESQAAQEIIGAVIALGKSLRLDVVAEGVET 1210 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + +L +GC Y Q PL + + Sbjct: 1211 AVQAAQLMDLGCLYGQGYFFYPPLPIDRL 1239 Score = 87.7 bits (216), Expect = 8e-15, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 L V + D++ + + + TP T+LG + + G H D + R+ Sbjct: 11 ELLVNYTDDLICLHETDGNYLYVTPSSQTLLGYSPEELIGKNPY--TLFHPEDAERIRSG 68 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + L +R+R + W+ P+ + G++L + + D+T +++ Sbjct: 69 AHALALQGSANLTETYRMRKKSGGYVWLETLTHPICDEAGNVLFLVTTSRDVTRRRQLEL 128 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + N++ L+ Sbjct: 129 ELK-----------ANQELLEAFFQQSLEAC 148 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 13/198 (6%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV--ILIGFTVIQHVLATGYFSQGIF 401 L + + + + + + L I+ F V + + I Sbjct: 217 RALFDLGYFHTELELHRHDGSSFWIEGNYVCLYNENQEIIGHFGVQRDISDRIRLQAEIV 276 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 S ++ D T LG + G + ++H DR Sbjct: 277 QKTAELEYFFGSSLELFMIADSEGRLRRVNHHWQTCLGYDLNRVMG--AKFEEFLHPGDR 334 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 R + + + + R+R + W + S G I A D+TE Sbjct: 335 PRHRQMQQRLLAGEQIT-NHTIRLRTQGGDYRWYEWQG---LLSQGQIY---AAARDVTE 387 Query: 522 QKKSLEGILCNAFQDNLT 539 Q++ + + A + +T Sbjct: 388 QRQFSDRL--QAAYNQVT 403 Score = 58.0 bits (139), Expect = 8e-06, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 7/104 (6%) Query: 426 DRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 A L + G R W D + + + + G E Sbjct: 177 RMTRVNNAFAQQYQLPPQELIGLTPRLWFK----EDLELAKRLWRALFD--LGYFHTELE 230 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + D W+ + N N +I+ + G+ DI+++ + Sbjct: 231 LHRHDGSSFWIEGNYVCLYNENQEIIGHFGVQRDISDRIRLQAE 274 >gi|71278809|ref|YP_269948.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71144549|gb|AAZ25022.1| sensory box/GGDEF/GAF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 1206 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 127/566 (22%), Positives = 245/566 (43%), Gaps = 16/566 (2%) Query: 403 DGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIH 457 E+ LA +G+ + D + I G + G L Sbjct: 641 AEEKIKLAASVFSHAGEGIIITDDKATIIDINDAFTNITGFSREEAIGKNPRILQSGRQT 700 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + L G E R + + + ++ I + + +G Y+ + N Sbjct: 701 PEFYADMWQAL-----QNEGYWSGEVWNRRKNGEVYAVMQTISAVRDVHGIATHYVSLGN 755 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT K+ + A D LT +PNR DRL+ + + V+ +D+D +K Sbjct: 756 DITLMKEHQNQLEHIAHFDILTNLPNRVLLADRLSQAMLQCSRHKQ-SLAVVFLDLDGFK 814 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND G +GD++L++L+ R+ E L+ D LAR+ G+ F +L + Sbjct: 815 HVNDTHGHDIGDELLIALSVRMKEALRENDSLARIGGDEFVAVLADLTTVEDCEPVLERL 874 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + + P+ + ++ASIG + + + ++++A+ AMY AK G N F Sbjct: 875 LLAASEPVIFDNIVLNISASIGVTLYPQDNVGADLLMRHADQAMYVAKESGKNRYHLFDT 934 Query: 698 SSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + +V + + A++N + L Y P + + + G+EALI+W HPK G ++ Sbjct: 935 AQDDAVKVQRESLEAIRSALDNHQFVLHYQPKVNMRKGIVTGVEALIRWQHPKRGLLNPI 994 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ + E M + ++++ I W+ P+ I +NIA+ L + + + Sbjct: 995 EFLPVIENNPMSIEMGEWVIDTALTQISQWQKLGLNFPVSISVNIAALQLQQPDFTDRLM 1054 Query: 816 ALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 L++ P ++L E+ + + ++ +G++ LDDFGT S L+YL Sbjct: 1055 ILLAAHPDVEPHYLELEVLETSALEDVYNVSTIMNACMALGVNFALDDFGTGYSSLTYLR 1114 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P + +K + S + +AI+ +I +AK+ + +IA+ + L ++GC Sbjct: 1115 RLPANLIKIDQSFVRDMLHDSDDLAIVEGVIALAKSFKRDVIAEGVETIEHGTALLQLGC 1174 Query: 933 DYIQDSHVASPLGFNSILKLLKERFP 958 + Q +A P+ + I + + P Sbjct: 1175 ELAQGYGIARPMPASEIPTWISDWKP 1200 Score = 132 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 1/161 (0%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 + +I ++ + + + + E+ L + G+ WDW+IV RV Sbjct: 489 EANMTLIEQAASLASIAIEKIQANLALKASDEQMQLVLAGADLGFWDWNIVTGRVDRNER 548 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 AT+LG + W ++H DR+ ++ + R E+R+ + + Sbjct: 549 WATMLGYTHKELKHSTNQWADFVHQEDREKAWQSINDVLEGRSKSHSLEYRMLTKEGGYR 608 Query: 494 WMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 W+ + M +SNG LR G +DIT +K + E I A Sbjct: 609 WVHDQANVMQRHSNGKPLRMSGTHSDITNRKLAEEKIKLAA 649 Score = 91.6 bits (226), Expect = 6e-16, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 3/140 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 ++ + S ++ + G+ WDW + +ILGL+ + I +W I Sbjct: 216 NENVNSSQKQLLNVINGAKLGYWDWCYQTGEHVVNDEWLSILGLSRQDITNHISDWDGLI 275 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG--DILRYIG 514 H ND + + + + + EFR++ AD ++ W+ + + +R G Sbjct: 276 HPNDDQFMKKTVQTHILSGKN-YVVEFRMKHADGRWVWIQGSGSVIEYDENTHEPVRLCG 334 Query: 515 IANDITEQKKSLEGILCNAF 534 DIT +K + + Sbjct: 335 THQDITVRKLAELREKSRSH 354 >gi|284992145|ref|YP_003410699.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus DSM 43160] gi|284065390|gb|ADB76328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geodermatophilus obscurus DSM 43160] Length = 718 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 142/652 (21%), Positives = 280/652 (42%), Gaps = 24/652 (3%) Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLI 378 + L ++ G L + + Sbjct: 69 VGRQVGAALVDAHFTNPQSLSQTLCVLLDGEPGGGAAPLREGVLPDRRWHALVAAVAEGF 128 Query: 379 VILIGFTVIQHVLA--------TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + ++ A + + +R G+ + D+ + Sbjct: 129 SAALQERALREEEAILGAAAAAREQAREALHVSQQRFRAVFEGATIGIGIGDLEGRILEV 188 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 P + +LG R+ ++H D ++ + + R + E + +D Sbjct: 189 NPALVRLLGHPVEDF--RRRSVQEFMHPADVEHVWRLYGELIRGERDHFRLEKQFLKSDG 246 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + W + + + + +G + + +D+T + + A D LTG+PNR++FL Sbjct: 247 ESVWTDLTVSLLRDGDGRPRYQLALIHDVTALRHLRRRLEFEAQHDALTGLPNRRTFLAH 306 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-L 609 L + D + R + +D+D +K +ND LG VGD +LV++ +R+ +++ + + Sbjct: 307 LDAVFDQA--SPGARAGLCYLDLDGFKAVNDTLGHEVGDQLLVAVAQRLVSVVRDRGLSV 364 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL G+ F +++ + S ++ A + ++A P+ L R + +TAS+G + + I Sbjct: 365 ARLGGDEFVVLVPGTSGSGQLVALAEEVLAAVAQPVELGGRRVEITASVGVVERSIADID 424 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPI 727 +E+L+ A++ +Y AK G + F R + L A+ L + Y P+ Sbjct: 425 PAELLRAADMTLYWAKADGRSQWALFEPERDAREITRYRLSSALPAALAGEHLLVHYQPL 484 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 RL D + G+EAL++W+HP+ G + F+ +AEE MI + +L R SW Sbjct: 485 RRLADGRLHGVEALVRWEHPRMGLLGPESFVGLAEESGMIVPLGRHVLRAACRQAFSWFG 544 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + P ++ +N+AS+ L D L + ++ +S + P +++L +ES V+G + Sbjct: 545 AGSSGP-YVSVNLASRQLRDEHLVDDVRTALSDSGLHPQQLQLEITESAVLGTDPLTGHT 603 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI------AILRS 901 L L +G+ L +DDFGT S L++L +P D +K +GS + G ++ S Sbjct: 604 LDALAGMGVRLAIDDFGTGYSNLAHLRRLPLDELKLDGSFLRGLRSDDAVDPVDVQLVGS 663 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 II +A + T+ A+ + + + L + CD Q +++ P + +LL Sbjct: 664 IISLAHLLGLTVTAEGVETQAQVTILRELDCDAGQGTYLGRPAEPADLGRLL 715 >gi|13476460|ref|NP_108030.1| hypothetical protein mll7787 [Mesorhizobium loti MAFF303099] gi|14027221|dbj|BAB54175.1| mll7787 [Mesorhizobium loti MAFF303099] Length = 724 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 134/585 (22%), Positives = 255/585 (43%), Gaps = 30/585 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + + Q + R A+ + +D + + + + Sbjct: 151 VSIYEDITEQRRAEQDLKEQHRRFDAALANMSQGLLMYDADGKMIVRNRRFLELYNVTAA 210 Query: 444 S--MHGPIRNWLPYIHIN------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + R+ L + D D+ ++ + ++ +R D + Sbjct: 211 DFPLGTTHRDALEKLLEIGIYQQIDVDSEVAKTEACL--VVAKMHSAYRYLT-DG--RTV 265 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 ++ +PMS ++ +D+TE++++ E ++ A D LTG+PNR F +RL L Sbjct: 266 LVTRQPMSGG-----GWVVTFDDVTERRRTEERMIHLAHHDTLTGLPNRSMFRERLDLAL 320 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSG 614 + +A + +D+D++K IND G GD +L S+ R+ L D++AR G Sbjct: 321 EDAAA---PPLAIFSLDLDRFKAINDTWGHPAGDWLLKSVAERLQRCLHNETDVVARFGG 377 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F ++ + A + ++IA R++ + S+G A + + +L Sbjct: 378 DEFVVMQFNSKGIADAEKLAKRIVEAIAKQFRDKSRDMHIGISLGIAVFPQDGRDADTLL 437 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMD 732 KNA+ A+Y AK G N F + + ++ DL A+ E L + PI+ + Sbjct: 438 KNADTALYRAKSEGRNLYRFFEPAMDAIVQARRALEVDLDAALPRQEFDLDFQPIMNIAS 497 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 EI+G EAL++W P G ++ F+ +AEE +I + + L + SW P Sbjct: 498 GEIIGAEALMRWHSPARGTVAPDAFIPVAEETGLIVPLGEWALRKACAAAASWP-----P 552 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + I +N+++ L + + ++ + +++L +E+V+M + L +LR Sbjct: 553 GLRIAVNVSAVQLKSGGFARSVISALAFSGVPAGQLELEITETVLMDESKAVLKTLRQLR 612 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911 +GI + LDDFGT S L+YL P D +K + S + AI+R+II + + Sbjct: 613 DLGIRIALDDFGTGYSSLAYLRRFPVDKIKIDRSFIRDMGNRDTAAIVRTIIGLGNELGI 672 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + A+ + E+ + L GC+ Q + P I +LLK R Sbjct: 673 VVTAEGVETEVQLDMLRDNGCEEAQGYLIGVPSKAADIQRLLKAR 717 Score = 45.3 bits (106), Expect = 0.056, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 13/159 (8%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ + V + ER S AV + +D + + I Sbjct: 20 GSIVPERAAEGVERPRRMEDELREQNERFSAAVENMSHGLCMFDADERMIICNGNYINIF 79 Query: 439 GLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQY----EFRVRAADNQFH 493 L + + P +++ + H D D R+ + + +D + Sbjct: 80 CLDAK-LVRPGIHFIDILRHSVDIGIASQSADELYAVRKPYIDQAKPSTYEETLSDGRII 138 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + R P++ + ++ I DITEQ+++ + + Sbjct: 139 NISHR--PLA-----LGGWVSIYEDITEQRRAEQDLKEQ 170 >gi|89092959|ref|ZP_01165910.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum sp. MED92] gi|89082609|gb|EAR61830.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum sp. MED92] Length = 948 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 140/573 (24%), Positives = 268/573 (46%), Gaps = 13/573 (2%) Query: 391 LATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 A + + + ER + + + I+ D T +LG++ Sbjct: 375 RAQNLTERSVQLEAERDLVTSLLDTAEAIIITQDDNGRVETLNRFGQQVLGISESE--AK 432 Query: 449 IRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + +L H R +L + + ++Q E +R+++ Q + + + + G Sbjct: 433 MMGFLELNHETGSLPQHRQLLAHLIERKEHKVQMEASIRSSNGQMLQISW-LHSVLSVPG 491 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 +R + I D+TE+ + + ++ A D LT +PNR F +++ + + + Sbjct: 492 GDIRVLTIGLDLTERMHAEKRLVWMANHDPLTALPNRLLFTEKVDEAIKRYQEKNGI-LA 550 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ D+D +K +ND LG VGD++L RI ++ +LARL G+ F ++L N Sbjct: 551 ILFCDLDSFKDVNDSLGHPVGDELLQQAAERIQNIICNDGVLARLGGDEFTVLLEGRANI 610 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 +I + A + ++ + EI T SIG + + ++++A++AM+ AK Sbjct: 611 REIENVAQHIIRAFRQSFFIDGYEIFSTISIGISLHPDHGDNVTSLIQHADVAMFDAKES 670 Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + + R +R + DL A+E E + Y P I ++G+EAL++W Sbjct: 671 GKNQLRFYHDEQGSQRYERFSLVNDLRRALEKDEFRIFYQPQIDTRTGNVMGVEALLRWQ 730 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 H + G IS ++F+ +AEE +I I ++L R W DQ I +NIA + + Sbjct: 731 HSEAGMISPAKFIPLAEEQGLIVPIGEWVLRESCRMGKIWHDQG--MDFRIGVNIAGQQI 788 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + L +Q + ++ P + L +E+ ++ PE + L + R++G+SL++DDFGT Sbjct: 789 MHESLMGTVQTALDESGIRPHLLDLEVTENFLLKQPEITIPKLHKFREMGLSLSMDDFGT 848 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL +P +T+K + S + + AI+++II +AK++ +A+ + Sbjct: 849 GFSSLSYLKKLPINTLKIDQSFVRDIGSDPEGEAIVKAIIVLAKSLGLEALAEGVETSEQ 908 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L GC IQ + + PL + + + Sbjct: 909 LSYLRTHGCHLIQGYYFSRPLPAEELPDFVMNQ 941 >gi|156932786|ref|YP_001436702.1| hypothetical protein ESA_00582 [Cronobacter sakazakii ATCC BAA-894] gi|156531040|gb|ABU75866.1| hypothetical protein ESA_00582 [Cronobacter sakazakii ATCC BAA-894] Length = 839 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 145/612 (23%), Positives = 277/612 (45%), Gaps = 27/612 (4%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-----------GIFSDGERQSLAVLGS 414 ++ L+ L+ L+ +++ L + + + R + Sbjct: 238 VVILPLLIFLMCFTGLVAGISMRNALNKARLNDENAFLLEQNRLALAASERRFRDVAEAT 297 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D +W+ D + I G G DR G+ Sbjct: 298 TDWIWETDDELRFTWLSERFPVITGYRIADWLGRRVTEFIQ---EDRATLEAWFHQP-GH 353 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R R +A + + +P++ G + + G A D+T + ++ + + Sbjct: 354 GGHRNMTHCRYLSAQGHQRYCNLVAKPIATPEGGLS-FRGTATDVTLEVEAQARVQYLSL 412 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LTG+PNR + L L T ++ ++ +D+DK+K +ND+ G VGD++L Sbjct: 413 HDELTGLPNRVRMKEFLEGKLQSRPTREH-PLAMISLDLDKFKPVNDLFGHGVGDELLHQ 471 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 ++ R+ L+ D++AR G+ F +I+ + + + P ++ + EI + Sbjct: 472 VSERLRACLRDFDLVARQGGDEFILIIPDIERKEALEQLCARILAELNRPFSVQDHEILI 531 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLC 712 AS+G A + ++++L+ +++A+Y AK RG N + R ++ L Sbjct: 532 GASMGIALAPQDAVNATDLLRFSDIALYKAKSRGRNGWVFYNADMAEQIVQRREMENSLR 591 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+ + LVY P + E++V +EAL++W HP G + +F+ +AEE +I AI+ Sbjct: 592 EAIREQQFRLVYQPRYDVNAEKVVAVEALLRWYHPTLGLLMPDQFIPLAEETGLIIAISD 651 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L RD Q +MP + + +NI++ + L E +Q +++ T +P R++L Sbjct: 652 WVLNAACRD-----AQRDMPGLSVSVNISAMEFRTPGLVERVQEVLNTTGLAPERLELEV 706 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +E+ + NPE+S L+ L+ +G+ L +DDFGT S LSYL PFD +K + S + G Sbjct: 707 TENATLSNPEQSLALMNGLKALGVRLLIDDFGTGYSSLSYLRTFPFDGIKLDKSFVAGMP 766 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 ++ +I+ +II + K +I A+ + + +L CD Q + PL ++ Sbjct: 767 HSDNANSIVENIIGLGKAFSLSITAEGVETPEQLAQLKMYQCDETQGYLMCRPLPLERLI 826 Query: 951 KLLKER-FPLVK 961 L+++ P K Sbjct: 827 AQLRKQGMPPAK 838 >gi|118478971|ref|YP_896122.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] gi|229185978|ref|ZP_04313149.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] gi|118418196|gb|ABK86615.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] gi|228597530|gb|EEK55179.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] Length = 909 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 311/725 (42%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + K + + E + + Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFKCMEKSFIIHEHTLNL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 662 NAIQNEELFLYYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 722 WTLQQACEQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVTFLQKNKCQFIQGYYYSKPIHINAFT 900 Query: 951 KLLKE 955 +LLK Sbjct: 901 ELLKS 905 >gi|304396817|ref|ZP_07378697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. aB] gi|304355613|gb|EFM19980.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. aB] Length = 949 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 141/571 (24%), Positives = 259/571 (45%), Gaps = 23/571 (4%) Query: 388 QHVLATGYFSQGIFSDGERQSL------AVLGSGDIVWDWDIVRDRVT-TTPDIATILGL 440 Q +L ++ ++ +L + V D + + + GL Sbjct: 384 QQILRARDLAEA--QSTQKTALSKFLDNIIANIPSCVIVEDAITREILLVNDRTQQLFGL 441 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + + + D F + D + G + E + A + + R Sbjct: 442 SKSLIVNKRPH--ECMSPELSDYFNNLADVALRSE-GMHEREQLLMTASGERI-LHTRAT 497 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 ++ + + + D+T+Q+ + I A DNLT +PNR F RL+ L + Sbjct: 498 AINGQDARRNYLMLLVEDVTDQRAADARIHHMAHHDNLTSLPNRILFRQRLSEALRTAGQ 557 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + +D+D +K +ND LG +GD++L S+ +R+ L+ D LAR+ G+ F I+ Sbjct: 558 MQRQTAALC-LDLDNFKNVNDALGHQIGDELLRSVAKRLRNALRDQDTLARIGGDEFAIV 616 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L + + + A + ++I P+N+ ++V S+G A T+ T ++L+ A++A Sbjct: 617 LPHVAGNDEASAVAQRLIEAIRPPVNIEGHNLSVGLSVGIALSTTITNTPEQLLRCADMA 676 Query: 681 MYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N E F + R +I+ DL A+ L L Y PI I+G Sbjct: 677 LYEAKRNGRNRYEHFTLEMDDVARSRRLIENDLRDAISGGHLRLYYQPITNGDHHTIIGY 736 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP G I ++F+ IAEE +I + F L R+ SW + + + Sbjct: 737 EALMRWHHPIRGLIMPNDFIPIAEETGLIHMLGAFALYEACREAASWEGEQ-----SVSV 791 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ ++ L ++ + ++ P+R+++ +ESV++ + + L L+ +G+ + Sbjct: 792 NLSPLQFKNSSLVPVVEGALKESGLDPARLEVEITESVLLDDSLGNIRTLQNLKALGVQI 851 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916 LDDFGT S LSYL PFD +K + S + + R AI+R+I M+++++ I A+ Sbjct: 852 ALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMGDSREALAIIRAITGMSRSLDIQITAE 911 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 + + +L GC Q P Sbjct: 912 GVESDEQFAKLRDEGCTLFQGFLFGRPQPSE 942 Score = 71.5 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 3/140 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 +R L V G D ++ D+ V G + + G Sbjct: 250 EQQRIRSEQREQEQRFRLLVEGVTDYAIYMLDVDGVVVNWNAGAERAKGYKAEEVVGQHF 309 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H + + + + GR + E D W + I + + +G ++ Sbjct: 310 SLFYSSH-ERLNRTPEA-NLGIALKTGRFEDEGWRYRKDGSAFWAHVVIDAIHDDDGKLV 367 Query: 511 RYIGIANDITEQKKSLEGIL 530 + I D TE+++ + IL Sbjct: 368 GFAKITRDRTERREQEQQIL 387 Score = 68.8 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 5/173 (2%) Query: 363 DNDIIQPALVGGLVLIVI-LIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGD-IVW 419 + ++ + V L+GF I Q + E R L V G D ++ Sbjct: 91 GSTFWAHVVIYPIRNEVARLVGFAAICRDCTRQQEQQHKEREQESRFRLLVEGVTDYAIY 150 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 D + V G + + G ++ + DR N + YR GR Sbjct: 151 MLDHDGNVVNWNAGAQRAKGYVAEEIVGQ--HFSRFYSAQDRLNHVPEQNLQTAYRTGRF 208 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + E D W + I + + G +L Y I D TEQ++ Sbjct: 209 EDEGWRYRKDGSAFWAHVVIDTIRDDQGQLLGYAKITRDCTEQQRIRSEQREQ 261 Score = 58.8 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 2/110 (1%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + +LG + G + DR + + + GR + E Sbjct: 26 PDGTVASWNGGGLHVLGYRPDEIIGQHATLF--YNEEDRRRGQLQRELDIAANAGRFETE 83 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 D W + I P+ N ++ + I D T Q++ Sbjct: 84 GWRCRKDGSTFWAHVVIYPIRNEVARLVGFAAICRDCTRQQEQQHKEREQ 133 >gi|254492620|ref|ZP_05105791.1| ammonium transporter, putative [Methylophaga thiooxidans DMS010] gi|224462141|gb|EEF78419.1| ammonium transporter, putative [Methylophaga thiooxydans DMS010] Length = 1000 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 159/793 (20%), Positives = 310/793 (39%), Gaps = 39/793 (4%) Query: 202 LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEI-- 259 + I TI + + + + I G L LV++ + L+ + + Sbjct: 210 VIILNTILAAIWGGISTTLLKYITDGYVDVLMIINGVLGGLVSVTANCHLVTPVEAMMIG 269 Query: 260 ALSSSLIIFLFMYLHWNRW-----HAKVGYITFSGIACIAILFC----MSFYYPMVTASI 310 + ++ + +L R V L + Sbjct: 270 LMGGLIVFYGDRFLESKRIDDAIGVIPVHLFAGIWGTLAVALMGNTERLGSGLSWTEQLY 329 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 + + Y++F Y + R L I ++ + + + Sbjct: 330 VQSLGIVTIGIYSFFTAYVLFRIINRFYPLRVNEQAELIGLNVAEHRVSTEVFDLLAAMQ 389 Query: 371 LVGGLVLIVILIGFT------------------VIQHVLATGYFSQGIFSDGERQSLAVL 412 + V + R+ + Sbjct: 390 HQQQKSDFSSRVPVEPFTEVGQIAQQYNRVIDKVNSEIEQRDQAFSAFKQSEFRKGAIMQ 449 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS-- 470 + D + + D + P G++ S+ G + +I R L+ Sbjct: 450 AAMDCIVTINGRGDIIEFNPASEQCFGMSRKSVLGDNF-FTLFIAEESRSAAINSLNQGF 508 Query: 471 -FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + +D + I + + Y DIT Q + + + Sbjct: 509 VAGDGMVLKRHNITELSRSDGVEFPAEVVITQTTLPTQSEIEYTLHIRDITRQIRLQDRL 568 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A+ D LTG+ NR F+ L + + +M +D+D++KKIND LG GD Sbjct: 569 KQLAYNDPLTGLYNRTYFMSHLKQRIAYHQENLG-SVVLMFLDLDQFKKINDNLGHKAGD 627 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L + R+ ++++ D++ R G+ F I++ + A + K + P+ L Sbjct: 628 QLLCEVASRLKQVMRELDLVGRWGGDEFVIVMSGNITLSQAEHKAEDILKVMRSPVKLDG 687 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMI 707 + + V SIG A + +IT ++++ A++AMY +K G N + +S + + Sbjct: 688 QTLVVPTSIGLAISENGQITPEQLMQQADMAMYRSKQSGRNTYRVYLEEMSEKTKQKFQL 747 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L A+ ++L L Y P + +M +E+VG EAL++W+HP+ G I EF+ + +E +I Sbjct: 748 ENALPEAIVKNQLTLHYQPKVSVMTDEVVGFEALVRWNHPELGLIMPGEFIPLIDESNLI 807 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 + ++++++ + WR Q P + + INI+ L + L + L + + Sbjct: 808 IHLGEWVIQQVIEQLSRWR-QIGAPLLPVAINISGHHLHSDNLAGFVSKLTQRFDIDGAL 866 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++ +E V+ GN E+S + L+K I L++DDFGT S LSYL P D +K + + Sbjct: 867 LEFEITEGVLTGNTEQSIAAMKALKKTNIRLSIDDFGTGYSSLSYLKKFPVDVLKIDQAF 926 Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + S + AI ++II + K++ IIA+ + + L + CD Q + + P+ Sbjct: 927 IRECQSKREDAAICKTIITLGKSLGLQIIAEGVETIEQLTFLKQHDCDIYQGYYFSRPIP 986 Query: 946 FNSILKLLKERFP 958 +IL LL++R P Sbjct: 987 AENILPLLEQRLP 999 >gi|313199791|ref|YP_004038449.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312439107|gb|ADQ83213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylovorus sp. MP688] Length = 1237 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 128/573 (22%), Positives = 264/573 (46%), Gaps = 12/573 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + + S D + +D R+ + + Sbjct: 662 AIERHRSDTQLQERERELRSLLDNSPDTITRYDANCRRLYVNQRMLEYFDTTPDVVLHTT 721 Query: 450 RNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 P + + R + + + E ++A++ + IR+ P N +G Sbjct: 722 PRDFPGGSVTVEYEARIRQAF---LTGQPD--ELELPLKASNGKLLVRHIRMMPEFNPDG 776 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + + + DITE + + I AF D LT +PNR L+++ + + +A + Sbjct: 777 TVASVLAVGRDITEIVEYRQRIHDMAFYDALTRLPNRAMLLEQMRSGILAAAAGAQQVFS 836 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 +MV+D+D++K+IN+ LG + GD +L R+ + L+ D+LAR+ G+ F ++L + Sbjct: 837 LMVLDLDRFKQINETLGHSTGDLLLCEAAARLQDHLREGDMLARMGGDEFVLLLRPGDAE 896 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ A + ++ P + RE+ V+ S+G A + + + +LK A+ AMYHAK + Sbjct: 897 PELIAMAQTLIQAFRQPFLVAGRELFVSTSVGIARYPTDSQDADTLLKFADTAMYHAKAQ 956 Query: 688 GGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N+ + + + I+ + + A++ EL L Y P L++ IVG+EAL++W+ Sbjct: 957 GRNNFQFYVSALTEVSSARIELETMMRRAIQQQELELYYQPQWDLLENRIVGVEALLRWN 1016 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 + G + + F+ +AEE +I + ++L + + W P+ I +N++++ Sbjct: 1017 QTEHGLMMPNVFIPVAEETGLIIELGEWVLTMACKQAVQWNKDK-DEPLKIAVNLSTRQF 1075 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + N L + ++ T P IKL +ES+++ + L +G+ +++DDFGT Sbjct: 1076 IQNPLLASVTRILHDTGCRPEWIKLEITESLLLESNLDILNTLNAFDAMGLVISIDDFGT 1135 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL P +K + S + + +++++I +A + ++A+ + ++ Sbjct: 1136 GYSALSYLNRFPVKQIKIDRSFVKDVPHDTHKSELVKAMISIAHVLNLDVVAEGVETQVQ 1195 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L GC +Q P+ ++ +L+E+ Sbjct: 1196 SDYLKASGCRAVQGYFYGRPMPLAALEAMLREQ 1228 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 28/259 (10%), Positives = 73/259 (28%), Gaps = 40/259 (15%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + + ++A + + D + LG + ++ Sbjct: 6 LVDAQKALADSKQLLAMAGDLARISMAIVDTDGRWLAANTPCCQQLGYEEAELLNT--SY 63 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 +H DR + + + E R + + W+ P+ + + +L Y Sbjct: 64 CDLVHPEDRRAEKLTWREVLAACCAQ-PLEHRFKHRSGRHVWLSTSFSPIRSQDNTLLFY 122 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + +IT++K + R L + + + D Sbjct: 123 LLRIENITDRKLGEQH---------------RVLMNFALNQVSEAAYLLDEN-------- 159 Query: 573 IDKYKKINDVLGIAVG---DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 D+ +ND A+G +++L + R ++ + Sbjct: 160 -DRLTYVNDAACHALGYSREELLQ----------MEMGDIHRDGWPEITRTTLNNSAPHL 208 Query: 630 IADFAIAMRKSIAMPINLL 648 +A+ + P+ + Sbjct: 209 VAEAMHTRQDGSQFPVEIH 227 Score = 58.0 bits (139), Expect = 7e-06, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 2/152 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +++ + Q + S + V D V +D RV P +L + Sbjct: 239 RLVMVRDIGDRKAAEQQLRSQEQLYHTLVDHLPDPVIRYDSEGKRVFLNPVAEALLQRPT 298 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH--WMIIRIR 500 + G L ++ + + + +D Q H + +R+ Sbjct: 299 AELLGKTSLELNPASQALQEYVERVKHVVATGEASDFDFFMDRQPSDLQVHNKVIAVRMV 358 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 P + G I + + D++ K++ Sbjct: 359 PERDPEGRIAGVLAVGRDVSMLKEAQRKFSSL 390 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 52/393 (13%), Positives = 121/393 (30%), Gaps = 45/393 (11%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 R +D+ V + ++ I VLA G + + S + D++ Sbjct: 341 RQPSDLQVHNKVIAVRMVPERDPEGRIAGVLAVGRDVSMLKEAQRKFSSLLENIPDLIAR 400 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 +D+ + P G+ + + G P ++I + + Sbjct: 401 FDLQGRYLYVNPTFCETFGMKAADLIGQQGITWPGEAGQSAPILKSIQEVAQREEAITVT 460 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC-------NA 533 + + + + ++ R+ P S+ G ++ + + D+T+ + A Sbjct: 461 LDVAL---NGKPSYLEWRLIPESDQQGRVISVLAVGRDMTQLRMHERLEQMRLLILESLA 517 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D + + LD +T ++ + ++M++D + G +L Sbjct: 518 HGDAFSSV------LDLVTRYMEQAK--PGFLCSIMLLD-------------STGTRLLC 556 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR--KSIAMPINLLERE 651 + + + +A + G I + + A + P +E Sbjct: 557 THAPSL-----PAEFVAAVDG---VTIGMGVGSCGTAAVLQERVLVDDIRTHPYWAPYKE 608 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-ED 710 I + A++ ++ ML A+Y + G E S V I E Sbjct: 609 IALAANLLACWSEPIFDSAHRMLGT--FAIYR-REAGSPSAEDLNFIHQASHLVAIAIER 665 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 + E ++ + I +A + Sbjct: 666 HRSDTQLQERERELRSLLDNSPDTITRYDANCR 698 >gi|83310455|ref|YP_420719.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82945296|dbj|BAE50160.1| Predicted signal transduction protein [Magnetospirillum magneticum AMB-1] Length = 916 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 152/665 (22%), Positives = 274/665 (41%), Gaps = 20/665 (3%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 ++ + + + ++VL + + ++ RA+L I Sbjct: 257 FVVVVEQPLLSALKLPGGAVVIVTLVLLFGGVGAWVLVRYSRRAIL-----APIDALAEA 311 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413 + + + L + T + E+ L + Sbjct: 312 VRDVEAGDMSRRAPVESSDEIGALAMAFNSMTG-----RVAGLLNDLGESEEKFRLVMES 366 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFV 472 + D + D V+ + G + G + L H D L + + Sbjct: 367 ASDALVVIDAEGKIVSWNGAATRMFGYQPAEIMGRNVSLLMPEHLRERHDQILARLRAKI 426 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R E D + + + S Y GI DI+ +K++ I Sbjct: 427 DARIRTDPREQPAMRQDGTLFPVEVTLAGFSFKGNR--FYSGIMRDISARKEAESNIRFL 484 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D LTG+ NR +RL IL T ++ ID+D +K +NDVLG + GD +L Sbjct: 485 ARHDALTGLANRVVLRERLDEIL--PQTGARQMHCLLFIDLDNFKLVNDVLGHSFGDRLL 542 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 V + R+ + +I+ R G+ F ++ + A+ A + + + + I Sbjct: 543 VEVAGRLRSIEGGHNIVCRHGGDEFILLAPDIRTRERAAELAERVLAVMGDAFAIDAQAI 602 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKED 710 V SIG + + +++ A++AMY AK +G + F + +R +++ Sbjct: 603 EVGCSIGISVAPDDGTDAETLIRKADIAMYKAKEKGRLGYQFFTAAMDHQMVERRELEKS 662 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L + + E+++ P +RL D + G EAL +W + G + F+ +AEE ++ AI Sbjct: 663 LRRGLRDGEIFIHLQPKVRLGDGGVTGFEALARWQSAEHGLVPPVRFIPLAEECGLVGAI 722 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 +L R + WR + + +N+++ L + L + AL+ + PS ++L Sbjct: 723 GDVVLRRTLETLAGWRAAGRKV-LPVAVNLSAVQLGNPALAGEIGALLREFDLPPSLLEL 781 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ES++MG+ ++ R +L RL+ GI L++DDFGT S LSYL P D +K + S +T Sbjct: 782 ELTESMLMGDVDQVRAILFRLKDQGIRLSIDDFGTGYSSLSYLKRFPVDVLKIDRSFVTD 841 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + A+ +II MAK + +IA+ + E L R GCDY Q H A P+ + Sbjct: 842 LPGDPEGEALCLAIIHMAKALSLDVIAEGVETEAQSLFLARHGCDYAQGFHFARPVPVDE 901 Query: 949 ILKLL 953 + L Sbjct: 902 AAEYL 906 >gi|78486270|ref|YP_392195.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] gi|78364556|gb|ABB42521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thiomicrospira crunogena XCL-2] Length = 1289 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 135/561 (24%), Positives = 254/561 (45%), Gaps = 14/561 (2%) Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 ER +LA + + + D + I G + G N L Sbjct: 722 RQAEERLNLAASVFTHAREGIMITDKHARILDVNKGFTQITGYEREEVLGLNPNILNS-G 780 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 ++ + + + G E R + + +I I + NS+G Y+ + Sbjct: 781 CQSKEFYNLMWKTLFEE--GHWSGEIWNRNKNGTVYPQMITITAIKNSDGMTQNYLALFT 838 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT K+ + A D LT +PNR DRL + S ++L V+ ID+D +K Sbjct: 839 DITSLKEQQRQLEHIAHYDALTQLPNRSLLADRLQQAIFASQRHNSL-LAVLFIDLDGFK 897 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 K+ND+ G GD++LV L++R+ +L+ D LAR+ G+ F ++L++ + + Sbjct: 898 KVNDLHGHDAGDELLVELSKRMKNILREEDTLARIGGDEFIVVLVNLDAPSDCEMILRRL 957 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +S + +++ ++V+ASIG + + + ++++A+ AMY AK G N F V Sbjct: 958 LESTSESVDIEGEVVSVSASIGVTFYPKDNVDADLLMRHADQAMYQAKQSGKNRYHYFDV 1017 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + I+ ++ A+ E L Y P + L ++G+EALI+W+HPK G + Sbjct: 1018 QMDSMLQSQSAIQNEIQDALNKGEFELYYQPKVNLAQNIVIGVEALIRWNHPKKGLLVPI 1077 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ E ++ +++E + + WR Q+ + I +N+++ L + ++ Sbjct: 1078 EFLPFIENHPFSVELDQWVMETALKQMSEWRAQSLE--MSISVNVSAYFLQQKNFIQILE 1135 Query: 816 ALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 L+S+ +++ E+ + N L+ R +G++ LDDFGT S L YL Sbjct: 1136 RLLSQYSDLPKFSLEIEVLETTALENISNISDLVHICRDMGVNFALDDFGTGYSSLMYLR 1195 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 ++P T+K + S + AI+ I+ +A +IA+ + + L MGC Sbjct: 1196 HLPARTIKIDKSFVRDMLVDMDDRAIIDGILKLASVFNREVIAEGVETVAHFEALLDMGC 1255 Query: 933 DYIQDSHVASPLGFNSILKLL 953 + +Q +A P+ + + + Sbjct: 1256 EQVQGYGIARPMPADQVSDWV 1276 Score = 123 bits (310), Expect = 1e-25, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 3/145 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + V A S+ + ER L + S WDWDI + + T+LG Sbjct: 455 LFLARDVTARVQQSKELVEKDERLELILSASKIGQWDWDIESNVMLWDERSCTMLGYPPE 514 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + W +H +D L + + + E+R+R+ D+ + W+ + + + Sbjct: 515 AFKMDYDKWASLLHPDD-AYVMKRLKAHLE-KGEAYSVEYRIRSGDDDWVWVESQGQTIE 572 Query: 504 -NSNGDILRYIGIANDITEQKKSLE 527 ++ G +R +GI DIT++K+S + Sbjct: 573 SDAKGRPIRMVGIYMDITDRKRSED 597 Score = 68.4 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 84/253 (33%), Gaps = 27/253 (10%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRD 426 Q ++ V ++ + + + + + S + V D Sbjct: 172 QSLILVLAVFTQAILILFLFYDISRRKQLQAELKQVATTLTNIMDSSTEVAVIATDTEGV 231 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG--------- 477 +LG ++ + G + + + + ++ +G Sbjct: 232 ITEFNSGAEKLLGYSAQELVGKETPLKFHSEKEIQARAQRLSEALKRPVKGFQVFTEKLK 291 Query: 478 ---RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-----GI 529 +E+ D + + + P+ + N + Y+G+A D+TE ++S + Sbjct: 292 EDSPQDHEWTYARKDGVLVPVSLIVTPILDENHQKVGYLGVAQDVTELRRSQQALIEARN 351 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY--KKINDVLGIAV 587 A D + + F + T D + + + +++ K++N+VL +V Sbjct: 352 QLEATLDTIPDL----LFEVDKEGCILNFHTADIEK---LYLKPEQFVGKRVNEVLPDSV 404 Query: 588 GDDVLVSLTRRIG 600 GD + ++ + Sbjct: 405 GDVIFQAMAEALE 417 Score = 51.1 bits (121), Expect = 9e-04, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 6/137 (4%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHI 458 + + ER + D V +LG+ + I+ Sbjct: 599 LVENEERLRTIFEILPIGITLTDREGQIVECNSASEVLLGIPREEHLARKYDAKEWTIYR 658 Query: 459 NDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D + + V + ++ + W+ + P+++ N + Sbjct: 659 ADGTAMPSEEYAAVRSLTNQETIKNQVMKVCHSGDCTWLNVSATPLNHPN---YGVVVTY 715 Query: 517 NDITEQKKSLEGILCNA 533 DI++++++ E + A Sbjct: 716 IDISDKRQAEERLNLAA 732 Score = 44.9 bits (105), Expect = 0.071, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 49/154 (31%), Gaps = 10/154 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q V Q + + + D++++ D + L L Sbjct: 330 LGVAQDVTELRRSQQALIEARNQLEATLDTIPDLLFEVDKEGCILNFHTADIEKLYLKPE 389 Query: 444 SMHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + + + D + + R + E+ + A + + + + Sbjct: 390 QFVGKR---VNEVLPDSVGDVIFQAMAEALETGRSQ-GLEYSL-AQNGKQSCYELSVSTK 444 Query: 503 SNSNGDILRYIGIANDITEQ----KKSLEGILCN 532 N +++ ++ +A D+T + K+ +E Sbjct: 445 INQKNEVVSFLFLARDVTARVQQSKELVEKDERL 478 >gi|192361938|ref|YP_001984117.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] gi|190688103|gb|ACE85781.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] Length = 856 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 133/569 (23%), Positives = 251/569 (44%), Gaps = 15/569 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A ++ + + + + D++++ +L + + G + Sbjct: 294 AVSEQTRELVNARAQLQATLDAIPDLLFEVGSDGIIYQFHTRRPELLLVPPEAFIGKAFS 353 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 ++ + G + ++ + + + I R Sbjct: 354 EFM---PDEVNQVIWSAMEEADA-TGFSEGKYYALEMPGGRRDFELSVASKAGKEKGIQR 409 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ ++ DITE+K++ I AF D LT +PNR+ DRL + ++ I Sbjct: 410 YVMLSRDITERKENEARINNLAFFDPLTQLPNRRLLQDRLEHAIATGQR-QAALGALLYI 468 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K +ND G VGD +L+++ R+ L+ D + RL G+ F +IL +N A Sbjct: 469 DLDDFKTLNDNRGHHVGDLLLIAVADRLRHSLRHEDTVGRLGGDEFLVILEGLSNDRDQA 528 Query: 632 DFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + +S+ L E+E + SIG + ++LK A+ AMYHAK Sbjct: 529 AQQVQQIAEKILQSLNQVYVLDEQEYFNSPSIGICLFGDDDADIEDLLKRADQAMYHAKA 588 Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F S ++ ++ A+ ++ L Y P + I G EALI+W Sbjct: 589 AGRNTLRFFDPHMQASAAQRFALQNEIREALLFNQFKLYYQPQVD-RTGRITGAEALIRW 647 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G IS +F+ IAEE +I + ++L+ + +I W+ + + IN++++ Sbjct: 648 LHPERGMISPMDFIPIAEESGLILPLGNWILDAACQQLIHWKQNPLTAALTLSINVSARQ 707 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + + A +++T +P ++ L +ES++ N + + L+ GI +LDDFG Sbjct: 708 FQQPDFVTQVLAAVTRTGANPHQLTLELTESILATNQQDIITKMDALKSHGIKFSLDDFG 767 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL +P + +K + S + AI R +I +A+++E +IA+ + + Sbjct: 768 TGYSSLSYLKRLPINELKIDKSFVNDILTDPNDAAIARMVIRLAQSMELNVIAEGVETQR 827 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951 L + GC + Q + P+G L+ Sbjct: 828 QRDWLEQEGCLHYQGYYFGKPVGAEEFLR 856 >gi|89094748|ref|ZP_01167683.1| sensory box/GGDEF/EAL domain protein [Oceanospirillum sp. MED92] gi|89081002|gb|EAR60239.1| sensory box/GGDEF/EAL domain protein [Oceanospirillum sp. MED92] Length = 711 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 146/584 (25%), Positives = 265/584 (45%), Gaps = 24/584 (4%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ + ++G+ + D + G+ + G Sbjct: 132 ELHEAKKAFQETQQQLAQIIVGNPIASFVIDSRHVITHWNKACEVLTGIPAIEAIGTKDT 191 Query: 452 WLPYI-HI--------------NDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 W + H +D + ++ +F + D W+ Sbjct: 192 WRGFYDHPRPVMANLVLQGALNDDIEQHYGKKFKPSELIPGAFEAQDFFPKMHDG--RWL 249 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 P+ + G+ + I DITEQK+ + IL A D+LT +PNR LDRL +L Sbjct: 250 YFTAAPLLDHQGNTIGAIETLQDITEQKEQEKKILHQAHFDSLTDLPNRFLALDRLN-LL 308 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 A + V+ ID+D +KK+ND LG A+GD +L+ ++R+ +++ D + RL G+ Sbjct: 309 TKEARRTRKKLAVLFIDLDDFKKVNDTLGHALGDKLLIQASQRLKSVIRSSDTIGRLGGD 368 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F +I+ + + +L + A + + + RE+ +T SIG + + + +L+ Sbjct: 369 EFIVIINNLDEALDVRPIAEKLLDNFRDVFKVESRELLLTTSIGISIYPDDGEEPNVLLR 428 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+ AMYH+K++G N F R+ I+E + A+ +E L Y P++ L + Sbjct: 429 NADSAMYHSKNQGRNAYHFFTEDMNAGVQRRLQIEEQMHSALGRNEFSLRYQPVLDLKNN 488 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G EAL++W +P GNIS EF+ IAE+ +I I F+LE+ + W + Sbjct: 489 RIAGAEALLRWHNPVLGNISPEEFIPIAEQTGLIVPIGYFVLEQSLKAARKWSTTYSNE- 547 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I +N++ D +L ++ L++ + + L +E V++GN + + L Sbjct: 548 FTIAVNLSPLQFKDPKLIVKIKELLASHRLEGNALSLEITEGVLLGNQIKVQEAFQELSD 607 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 GI +++DDFGT S L+YL F T+K + S M + A++ + I MA ++ Sbjct: 608 SGIQISMDDFGTGYSSLNYLREYKFQTLKIDRSFMQDFALDKSAPALINATIAMAHALDV 667 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + + L R GC++ Q ++ PL L + Sbjct: 668 EVIAEGVEEQEQLDYLIRKGCNFAQGYLLSKPLTEQDFEAFLND 711 Score = 52.6 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 2/132 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + ER S S D W+ D V + + G R W I Sbjct: 12 ELEIEIERLSDFAELSSDWFWEQDRKFRFVAFSGTGLNRINRQQSDFIGRCR-WEMPICP 70 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + + +++ D + + P+ + +G Y G + Sbjct: 71 SSFAAMKEH-KACCERHAPFFDFQYDNYGRDGKVQRFAVSGSPIYDESGQFKGYRGTGKN 129 Query: 519 ITEQKKSLEGIL 530 ITE ++ + Sbjct: 130 ITELHEAKKAFQ 141 >gi|228942821|ref|ZP_04105341.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976164|ref|ZP_04136655.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783554|gb|EEM31642.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816851|gb|EEM62956.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 828 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 165/760 (21%), Positives = 308/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 81 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA---------SIARITLASI 318 +L+ YL + V + + + + V++ + L Sbjct: 137 YLYFYLQDDLSDRSVILLRCLYRVFLLCIAIAATISKNVSSKRNYFIINPIFGKKLLVIF 196 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 250 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 251 NNQLEQTVSQRTKDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQSGSMLL 310 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 311 GEESAALIGQEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDIHFWY-VT 367 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ + I AF D +T I NR F L + + Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRTFFQQELDRFIKRA 426 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG +VGD VL + +R L LAR+ G+ F Sbjct: 427 QKSQD-KFGLLYIDLNRFKTINDTLGHSVGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 485 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + +T SIG A + I ++ +L++A+ Sbjct: 486 IIVHNQT-EQQLFDLCETLFRITEEPFVVNQHSFYLTLSIGIAVYPFGGINTTTLLQHAD 544 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + ++ Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPNALENNELFLLYQPQVDSKTGMVI 604 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L+ R + W + + Sbjct: 605 GAEALIRWKHPELGIISPFEFIPIAEETSQIISIGQWTLQEACRQLKEWHSA-GYANLKM 663 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + I + S I L +E + M + + + L L+ G+ Sbjct: 664 GINLSAIEFEQKGFVQTIISTIEEVGLPASSIDLELTERIAMVDEKETLSKLKALKSYGV 723 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGNEIIQTIISLAHTLNMKVI 783 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFLS 823 >gi|50812223|ref|YP_054577.1| sensor protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633696|emb|CAB13199.1| putative sensor protein [Bacillus subtilis subsp. subtilis str. 168] Length = 749 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 152/765 (19%), Positives = 293/765 (38%), Gaps = 61/765 (7%) Query: 234 IDFGFLSKLV------NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287 + FG S ++ + +S F+ +Y +R + Sbjct: 1 MGFGIWSMHFVGMMAVHMEMPMEYEFMPLMAAIGASVSGSFVSLYF-VSRHILTYYRLLT 59 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY-----------HGMKGYER 336 + A + M + + + I + I +K + Sbjct: 60 GSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFVSLKIFFDLAVKKHSE 119 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDII---------QPALVGGLVLIVILIGFTVI 387 ++ I + M T L + V LI F + Sbjct: 120 HLIFYKGVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQTFHWSIFVTLIIFCIQ 179 Query: 388 QHVLATGYFSQGIFSDGER--------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-- 437 +L + + + ER QSL V D ++ + D +++ + Sbjct: 180 TLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNI-DAIFILSLEGDIISSNHAGEEMIS 238 Query: 438 -LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G + + + + ++ + + + Q + Sbjct: 239 KFGFSMHDWRNYTSL-----------KVKRLFEQVKKDKQA-MNSDSDLITEKGQ-FHLN 285 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 I + P+ N ++ I D+T+Q K+ + I A D+LT +PNR+ + LT +L+ Sbjct: 286 ITLIPV-EVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDLPNRRHAISHLTKVLN 344 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + V +D++++K IND LG VGD +L +R+ ++ +ARL G+ Sbjct: 345 R-EHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSSVVPDNGFIARLGGDE 403 Query: 617 FGIILIS-ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F IIL + + A + + P + + + + SIG A E++K Sbjct: 404 FIIILTDANTGTGEADVLARKIIQKFKKPFKIQDHTLVTSVSIGIAISPKDGTDGLELMK 463 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDE 733 A++AMY AK R + + S + V + ++ L A+EN L Y P + + Sbjct: 464 KADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIENDRFVLHYQPQFSVKKQ 523 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 ++ G EALI+ P EF+ +AEE +I I ++++ + W D+ Sbjct: 524 KMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACKQARIWHDKGYD-- 581 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + INI+++ +L ++ ++K P +++ +ES+ M N S+ +L L + Sbjct: 582 LSVAINISARQFQSKDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDNLNHSKKVLSSLTE 641 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +GI +++DDFGT S LSYL P +K + S + K I +II M + Sbjct: 642 LGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSEQITGAIIAMGHQLSL 701 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +IA+ + + L GCD++Q + P+ + + E+ Sbjct: 702 QVIAEGVENAAQKQLLFEKGCDHLQGFFFSRPIPPEQFEQFIIEQ 746 >gi|326317200|ref|YP_004234872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374036|gb|ADX46305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1040 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 125/591 (21%), Positives = 237/591 (40%), Gaps = 25/591 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 V+Q + R + V I + Sbjct: 449 HIAVVQDISDRKQMEAAQRDSEARLRQILYRLPVGVCLVARDGTLSFRNERFEQI-CRHA 507 Query: 443 GSMHGPIRNWLPYIHIN--DRDNFRTILDSF----VGYRRGRLQYEFRVRAADNQFHWMI 496 ++ +R W + + R+ D+ E+ + D + Sbjct: 508 DAVPSTVREWWEAVQPDALRREQAMADWDAACTAARAGDGTLPSREYAITCGDGSVRTVD 567 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + + + + D+++ K + E I A+ D LT +PNR+ +DRL L Sbjct: 568 MAGVLLDGA------CLITMVDLSQHKAAEEEIHYLAYYDPLTQLPNRRLLVDRLQQALA 621 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 S V+++D+D +K +N+ G GD +L + +R+ ++ D +AR G+ Sbjct: 622 ASVRRGRC-GAVLMLDLDNFKTLNETQGHERGDMLLRQVAQRLRGCVQNEDTVARHGGDE 680 Query: 617 FGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 F ++L + + + + ++ P L T S+G + ++ T Sbjct: 681 FVVVLEDLGQSPQGAAARAEEMGQKILAAMRHPFMLEGEAHHTTLSMGVTVFQGARETVD 740 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 E+L+ +LAMY AK G N + + S ++ DL + E L Y P + Sbjct: 741 ELLQRTDLAMYQAKASGRNALRFYDPQMQASVAARAALETDLRDGLGRGEFELFYQPQVH 800 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 IVG EAL++W HP G +S EF+ +AEE +I + ++L + W Sbjct: 801 H--GHIVGAEALLRWRHPARGFVSPGEFIPLAEETGLILPLGEWVLRAACERLAQWSRHP 858 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 + I + +N++++ + A ++ T R+KL +ES++ + E + + Sbjct: 859 VLSQISLSVNVSARQFHQGGFVGQVLAALAGTGAEGRRLKLEMTESLLQQDLEDTIQKMQ 918 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907 +LR G+ +LDDFGT S L+YL +P D +K + S + + +I R+I+ + Sbjct: 919 QLRAYGVGFSLDDFGTGYSSLAYLKRLPLDELKIDQSFVRDVLTDPNDASIARTIVALGT 978 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 ++ +IA+ + E L R C Q ++ P+ + L+ P Sbjct: 979 SLGLRVIAEGVETEAQRVFLERNHCHAWQGYLLSRPVSADDFEHLVLSFPP 1029 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 407 QSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + V D R V ILG + H +D+ Sbjct: 345 FQTLFDQAAVGVAQVDTATRRFVRANARFCQILGYEPQELL--ALTVRDVTHQDDQAETE 402 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 ++D + +YE R R D Q W +R+ PM N ++I + DI+++K+ Sbjct: 403 AVIDRLAAGGQQEYRYEKRYRRKDGQMVWAELRLAPMRNDRRQPAQHIAVVQDISDRKQM 462 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 A +D+ RL IL Sbjct: 463 EA-----AQRDS----------EARLRQILYR 479 >gi|212639170|ref|YP_002315690.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus WK1] gi|212560650|gb|ACJ33705.1| Multidomain signal transduction protein (contains PAS, GGDEF and EAL domains) [Anoxybacillus flavithermus WK1] Length = 641 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 145/546 (26%), Positives = 252/546 (46%), Gaps = 16/546 (2%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 + + + + +P +L A ++H +D L + Sbjct: 103 ASEFTFILSSEGEITYVSPSAQHVLKCAEE---VCNHELFSFVHHDDIPLLMEKLHTIYA 159 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + E R R F WM + +P+ N +I I +A DIT+ K E ++ Sbjct: 160 TKEKETTVECRWRTHKGHFIWMDMHAQPLLNEKNEIEHVIVVAKDITKWKCCEEELIKLK 219 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D+LT IPNR F ++ + ID DK K IND GD L Sbjct: 220 HFDSLTNIPNRFYFETYAQHRIEKMR-----PFALCYIDFDKIKWINDRFTYQAGDFFLQ 274 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 RRI + L+ D AR+ G+ F I+L N +A + +S P E I Sbjct: 275 EAVRRIQQHLQQEDFFARIGGDEFVIVLHDVNKETMVARMEHFL-QSFVEPFRYKEHVIQ 333 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713 SIG + +LK A+ A+++AK RG + + + MI+++L L Sbjct: 334 SGLSIGVTFFPQDGTDLDTLLKQADQALFYAKERGKGYHFYHPQQNRK---RMIEQELPL 390 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+ N++ YL Y P + L ++ I+G+EAL++W HP G IS EF+ IAE+ I I + Sbjct: 391 ALLNNQFYLCYQPKVSLDNKSIMGVEALMRWTHPTLGAISPLEFISIAEKNGFIFEITTW 450 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +L+ R + WR P + + +N++ L E ++ ++ +T + P+ + L + Sbjct: 451 VLKEACRQVKQWRTHF--PTLKLAVNLSPFLLNRKEFVTHVKNILQETQFPPNYLILEIT 508 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893 ES +M N E + +L L++IGI + +DDFGT S L+Y+ +P +K + S + T+ Sbjct: 509 ESGLMENIETGKHILTELQQIGIQVAIDDFGTGFSSLAYIRNLPVSLLKIDRSFIRDITD 568 Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 I+ +II +AK+++ ++A+ + + + L +M CD+ Q + + L +L+ Sbjct: 569 NSKDATIVDTIIHLAKSLDLQVLAEGVERDDQVSLLQKMDCDFAQGFYFSQSLEAEKLLQ 628 Query: 952 LLKERF 957 L++ Sbjct: 629 WLEQHN 634 >gi|115524099|ref|YP_781010.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] gi|115518046|gb|ABJ06030.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] Length = 928 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 272/632 (43%), Gaps = 43/632 (6%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---------VIQHVLATGYFSQGIFS- 402 L I+ P G L ++ L+ I+H+ SQ + Sbjct: 313 LAERIAAGDLSARILPPFPKGELGNLMSLLNGAADSIQTQRRDIEHLNIRLLQSQQLEKT 372 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-----PIRNWLPYIH 457 + ER +A+ + +D V + GL+ + + + I Sbjct: 373 ERERLDIAISNITRGLLMYDADGRLVVCNRQYIEMHGLSPEVVKPGLPFCDLMAYRKQIG 432 Query: 458 I--NDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D + F + + + R E D + +P+ ++ Sbjct: 433 SFDGDVEEFCSSIRRNLADGKISRYLLE----TGDG--RSIESVTKPLPTG-----GWLV 481 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + D+T+++ E I A D LT +PNR F +RL + LD A + + + V IDID Sbjct: 482 MTEDVTQRRLYDERIAHMAHYDALTDLPNRVLFHERLESALD--AREPDDQLAVFYIDID 539 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND LG ++GD++L + R+ L D AR+ G+ F II + + D Sbjct: 540 QFKSVNDSLGHSIGDELLKIVADRLRGCLAATDFAARIGGDEFAIIQTAVAKATDTTDLV 599 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + +I P + +T ASIG A ++LKNA+LAMY AK G Sbjct: 600 ERIYAAIRKPYDCAGHLLTADASIGIALAPQHGANLDQLLKNADLAMYGAKAEGRRTYRF 659 Query: 695 FRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + ++ DL A+ + + Y P +RL D+++ G EAL++W HP G I Sbjct: 660 FEPAMEARVIALRTMEIDLRQAIADGGFEIYYQPQLRLCDDKVTGCEALLRWRHPVRGMI 719 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S +EF+ +AEE +I + ++L + + W + + +N++ Sbjct: 720 SPAEFIPVAEETGLINQLGEWVLVESCAEAVKWP-----GDVKVSVNVSPVQFGSEGFAL 774 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + A ++ + R++L +E+V++ + E + +L ++R +G+ + LDDFGT S LSY Sbjct: 775 KVAAALANSGLPAHRLELEITEAVLIRDDEAALTMLHQIRALGVGIALDDFGTGYSSLSY 834 Query: 873 LGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L PFD +K + S + + I+++++ +A T A+ + E + EL R+ Sbjct: 835 LRRFPFDKIKIDRSFIKNIEDANGSAHIVKAVVDIAAAQRMTTTAEGVETEGQLNELRRL 894 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 GC +Q + P+ + + LL P + Sbjct: 895 GCSEMQGYLYSPPVPASKLAALL---LPPDRR 923 >gi|119485663|ref|ZP_01619938.1| hypothetical protein L8106_24810 [Lyngbya sp. PCC 8106] gi|119456988|gb|EAW38115.1| hypothetical protein L8106_24810 [Lyngbya sp. PCC 8106] Length = 872 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 125/439 (28%), Positives = 228/439 (51%), Gaps = 6/439 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 QK+ I A D LT +PNR F ++L L S L V +D+D++K +N Sbjct: 423 AQKRVESIIRYQACHDALTHLPNRLLFDEQLALALANSKQQPEL-LGVAFLDLDRFKVVN 481 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L + R+ + L+ D +AR G+ F ++ ++ +I A + Sbjct: 482 DTLGHGIGDQLLQQVATRLKQCLRNCDTIARWGGDEFTLLFPHLTSTDEITKIAHRILDK 541 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +++P + +E+ VTAS+G A + +LK+A+ AMY AK +G N+ + F Sbjct: 542 LSIPFVIDNQELYVTASLGIALCPYDAEDAQTLLKHADAAMYRAKKQGRNNFQVFAEEMH 601 Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R +++ ++ DL A+ E L Y P + + +IVGLEALI+W HP G + +F+ Sbjct: 602 REALNQLTLEADLRRALIKEEFLLYYQPQVEISTGKIVGLEALIRWQHPTLGFVPPDQFI 661 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE+ +I I ++L+ SW+ + PP+ I +N++++ ++L + + Sbjct: 662 PLAEEIGLIAPIGQWVLQTACIQHQSWQAEGL-PPVRIAVNLSARQFHQSQLINIILQTL 720 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 T P ++L +ES M + E + L LR++G+ +T+DDFGT S L+ L + P Sbjct: 721 ETTEIDPQYLELEITESAAMQDVEFTIQTLQELREMGLHITIDDFGTGYSSLNVLKHFPL 780 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +T+K + S + + AI ++I+ +++ ++ ++A+ + + L + CD Q Sbjct: 781 NTLKIDRSFVQDIVENSRDAAIAQTIVALSQGLKLKVVAEGVETPQQLSFLRSIHCDLAQ 840 Query: 937 DSHVASPLGFNSILKLLKE 955 + P+ I KLL++ Sbjct: 841 GYYFCPPVPAIEIAKLLRQ 859 >gi|187924609|ref|YP_001896251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia phytofirmans PsJN] gi|187715803|gb|ACD17027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia phytofirmans PsJN] Length = 768 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 143/615 (23%), Positives = 264/615 (42%), Gaps = 19/615 (3%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + A+ R+ P +L I + H Q + E L Sbjct: 151 GVVLGAFAVYYRVPRR---PGAEEEAMLRDIGHSVGLAVH---QDTMVQRLAHSEEHHRL 204 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 V + + + P IL + I + + D Sbjct: 205 VVDHLIEGIVVQSRDGVVLACNPSAQRILRATPQIVGRSIHTVMVRAYHEDGSLVVDAAR 264 Query: 470 ---SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKS 525 + + L V W+ + P+ + + DI +++ Sbjct: 265 PTAQVLSTGKPVLGVTIGVELIGGDIVWITENVVPIIKPGESEPGSVLISFTDIGPVREA 324 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILD---LSATDDNLRPTVMVIDIDKYKKINDV 582 + A +D+LTG+ NR +R+ + S + V+ +D+D +KK+ND Sbjct: 325 QRQLKFLATRDSLTGLYNRAYLTERMRDLFTPHMSSGMGELASVAVLFVDLDGFKKVNDT 384 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G GD +L S+ R+ + D LAR+ G+ F I++ + NS + A + IA Sbjct: 385 AGHEAGDSLLCSVAERLSACIAPEDTLARVGGDEFVIVISAYENSGHLIGLARRVLDMIA 444 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 +P + + E + ASIG + + + +++NA+ AMYHAK RG N+ + F + Sbjct: 445 VPFAVADNEYYLGASIGISRFPEDGQDVATLMRNADSAMYHAKQRGRNNFQFFTAELNQH 504 Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + I++ L A+ +EL LVY PI+ D +G EAL++W + + GN+S EF+ + Sbjct: 505 LQRRFTIEQSLRRALAGNELSLVYQPIVDSHDGRTIGAEALLRWYNSELGNVSPGEFIPV 564 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE+ +I I F+L R + WR P + + +N++ + D L E ++ +++ Sbjct: 565 AEDAGLIVEIGDFVLARACEQVAQWRRTLA-PELIVAVNLSPRQFND-GLVERIERCLAQ 622 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + P+ ++L +E ++M + E +L L +G+ +++DDFGT S LSYL P Sbjct: 623 SGLEPTALELEITERLLMSDSETVLPMLSALNAMGVRISVDDFGTGYSSLSYLKRFPLHN 682 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + G IAI ++++ MA ++ + A+ + L + CD Q Sbjct: 683 LKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQAAFLRAIDCDKQQGY 742 Query: 939 HVASPLGFNSILKLL 953 + P+G ++ + L Sbjct: 743 LYSRPVGASAYARAL 757 >gi|83313420|ref|YP_423684.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82948261|dbj|BAE53125.1| Predicted signal transduction protein containing a membrane domain [Magnetospirillum magneticum AMB-1] Length = 893 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 136/620 (21%), Positives = 278/620 (44%), Gaps = 13/620 (2%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + ++ + + L + + + + + Sbjct: 262 AGGIVGGGARELMGLRKDGSTFPLELSTTEVRLEGQRLFIGIGRDITERKLTEAALRESE 321 Query: 405 ERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 ER +V+ ++ D + ILGL + + +L I ++ Sbjct: 322 ERLRAIAANVPGMVFQRELHPDGSLCFSYVSEGCRAILGLGPEQLIDNPQLFLSLIPEDE 381 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R F L E V +D + W+ + RP +G+++ + G+ D+T Sbjct: 382 RSGFYAGLGRS-ARSMEPFDEEMAVPGSDGRRRWLRGQSRPTLRGDGNVV-WDGVMLDVT 439 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + K + + + A+ D LT +PNR +FL+R +++A D V+ + +D+ IN Sbjct: 440 DSKHAEQRLSFLAYFDPLTRLPNRTAFLERFAAAREIAARDQ-TMLAVVSVGLDRLGIIN 498 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 +G ++GD VL++ + L D++AR SG+RF +++ + + + +R S Sbjct: 499 ATMGHSIGDQVLMAAGDLLRAALSSNDVIARTSGDRFLVLITGLGSKREAMEALERLRAS 558 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699 + ++ V+A++G A + + ++KNA+ A+ AK +G ++ F Sbjct: 559 AHATVAAAGQDFDVSAAMGAAVYPRDGDDAETLIKNADAALQLAKVQGPATLQVFTKEIS 618 Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + ++ L A++ EL Y P + L + ++VG+EAL++W+ P G +S ++F+ Sbjct: 619 ARAAKTLSLQTRLRRAIDQGELIAHYQPQVDLRNGDVVGMEALVRWNSPDLGMVSPADFI 678 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQAL 817 +AEE +I + FML R W+D+ PPI + +N++ + L + Sbjct: 679 PVAEESGLIDGVCEFMLWECTRQNKQWQDEGL-PPIPVAVNVSGRQFQYARRLLSACERA 737 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +++ +ES M + + + ++ +L+++GI+ ++DDFGT S LS L P Sbjct: 738 LVDNRLDSRWLEVELTESSAMRDADNAIAVVNQLKEMGIACSIDDFGTGYSSLSVLKRFP 797 Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S + + AI+ +II MAK + ++A+ + + + L +GCD + Sbjct: 798 ISKLKIDRSFVLDVTTDPNDAAIVDAIIAMAKALRLKVVAEGVEHQEHLDFLRNLGCDQM 857 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + PL + + LL E Sbjct: 858 QGYFFSRPLPADGMRALLAE 877 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 +P I ++LG A SM + L +H DRD + + EFR +A Sbjct: 100 WFSPSIRSVLGFAVESMGVNSQGCLHAVHWADRDTHLAEIRRSAAQM-DTCREEFRAISA 158 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ--DNL 538 + W+ P +G ++ + G+ D+T+ +++ + D+L Sbjct: 159 HGEVRWLKGASEPRRQEDGSVI-WDGVMVDVTDGRRAELRLEMLMDHAGDSL 209 Score = 57.7 bits (138), Expect = 1e-05, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 7/125 (5%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHI 458 R + + +GD + + + G AS + G L +H+ Sbjct: 192 RRAELRLEMLMDHAGDSLIVVGSDGTIDSVNAAAEALFGWASSELVGKPFTTLLPQSLHL 251 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D + G G E D + + + + +IGI D Sbjct: 252 DD---LLESAEVSAGGIVGGGARELMGLRKDGSTFPLELSTTEVRLEGQRL--FIGIGRD 306 Query: 519 ITEQK 523 ITE+K Sbjct: 307 ITERK 311 >gi|297199917|ref|ZP_06917314.1| sensory box/GGDEF family protein [Streptomyces sviceus ATCC 29083] gi|197710383|gb|EDY54417.1| sensory box/GGDEF family protein [Streptomyces sviceus ATCC 29083] Length = 631 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 137/553 (24%), Positives = 256/553 (46%), Gaps = 23/553 (4%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D V P +LG S + G L + + + R+ +L+ Sbjct: 77 DREGTVVDANPAFGELLGATSEELTGTPAADLVDLASD--TRTWHAYREVLRGRQAKLRC 134 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 + R++ D W I + P++ + DIT +++ + D +T + Sbjct: 135 KRRLKHPDGHSMWAQITVTPLAGDAHGSPGVLLSVADITARRELQARLRHLQMHDPVTRL 194 Query: 542 PNRQSFLDRLTTILD--LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 PNR F +RLT L+ R + +D+D ++ +ND LG VGD +L ++ R+ Sbjct: 195 PNRTLFFERLTAALEPESYEQGGTGRIGLCYLDLDGFQAVNDTLGHRVGDRLLAAVAERL 254 Query: 600 GELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 ++ARL G+ F +++ + ++AD A ++ K+I P +L + Sbjct: 255 TRCADEAGHDRATAPLVARLGGDEFALLVEDSTGTEQLADLAESLLKAIQAPFDLSGHRM 314 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710 +V+ASIG ++ +++ +++ A+ +Y AK G + F + Sbjct: 315 SVSASIGVVERRAAGTSATGLMQAADTTLYWAKADGRDRWTLFDPERNAHRMTRQALAST 374 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A+E E L Y P++ + D + G+EALI+WDHP++G ++ + F+ +AEE I + Sbjct: 375 LRPAIERGEFRLEYQPLVCMEDGRLRGVEALIRWDHPQFGMLTPNRFIQLAEEDGSIVPL 434 Query: 771 NLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 ++L R W+ D + PPIF+ +N+A + + D++L + +++T +P ++ Sbjct: 435 GRWILATACRQARQWQLDHPDEPPIFVSVNVAVRQVWDSDLVADVAETLAETGLAPHLLQ 494 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES VMG+ R L L +G+ + +DDFGT S L+YL +P +K +GS + Sbjct: 495 LELTESAVMGSAGRPLQALQALSDMGVGIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVR 554 Query: 890 G---------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 G ++ ++I +A + T+ A+ + L R+GCD Q Sbjct: 555 GFQYEGEGVPPNPADEVVVEAMIQLAHRLGLTVTAECVETSAQASRLRRIGCDTGQGWLY 614 Query: 941 ASPLGFNSILKLL 953 + P+ + I L+ Sbjct: 615 SRPVSPDRISGLM 627 >gi|313498336|gb|ADR59702.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida BIRD-1] Length = 699 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 147/581 (25%), Positives = 253/581 (43%), Gaps = 16/581 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLA 441 ++Q +SQ + + + V D+ R+ + G Sbjct: 129 ELELLQAKELAEQYSQEMAKLSQFLDSVIANIPASVIVQDLETQRILLANQQAERLFGGP 188 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 SM G + + D L +G E RV A + R Sbjct: 189 QRSMIGQLP--RECLAPAAGDYLEQQLVRGARSTKGH-AAETRVDTARG-PRTLRSRTLL 244 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + G + +A D TE+ + I A D LTG+PNR F +RL L + + Sbjct: 245 SQSREGQADYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSEN 304 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 L + +D+D +K IND LG A GD +L L +R+ L+ D LARL G+ F ++L Sbjct: 305 AKLTAALC-LDLDNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVL 363 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A + K+I+ P + + V SIG A + ++L A++A+ Sbjct: 364 TGLEGRDAACNTAQRLIKAISPPFQIEGHQFVVGVSIGIAIAPDDNDQAEQLLGYADMAL 423 Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N E F V R +++ DL A+ +L L Y P++ + G E Sbjct: 424 YQAKRNGRNRYECFDVELDVAARQRRLVETDLRTALHLGQLQLHYQPVVDHQTSSVTGYE 483 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP G + +F+ IAEE +I + L ++ SW + + +N Sbjct: 484 ALLRWEHPTRGMVMPMDFIPIAEETGLIHELGNRALNLACQEAASWDSEQ-----TVSVN 538 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++ + +L + ++ + P R++L +ESV++GN E + L L+ +G+S++ Sbjct: 539 LSAVQFKNGDLVHTVALALADSGLPPQRLELEITESVLLGNSEENVRTLRALKDLGVSIS 598 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKD 917 LDDFGT S L YL PFD +K + S + + R A I+R+I ++ ++ A+ Sbjct: 599 LDDFGTGYSSLGYLRSFPFDRIKIDKSFVHDMCDSREAMSIIRAITELSNSLMIKTTAEG 658 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGF-NSILKLLKERF 957 + E ++ L GC + Q P + +++ + Sbjct: 659 VESEEQMRRLAAEGCSHFQGYFYGRPAPAGERLKQVITQEQ 699 Score = 52.6 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 7/128 (5%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF- 464 L + D ++ P G + + G + D + Sbjct: 11 YRLLIQSVVDYAIYLLTPEGIVANWNPGAQRAKGYRAEEIVGQHYSLFYT----DAERVA 66 Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 L+ GR + D + I + + G ++ + + DI+E+ Sbjct: 67 GLPALNLEQARSTGRFEETGARLRKDGTVFHAHVVIEAVYDDAGQLVGFAKVTRDISERH 126 Query: 524 KSLEGILC 531 + +L Sbjct: 127 RQELELLQ 134 >gi|113866056|ref|YP_724545.1| signal transduction protein [Ralstonia eutropha H16] gi|113524832|emb|CAJ91177.1| predicted signal transduction protein containing PAS, GGDEF and EAL domains [Ralstonia eutropha H16] Length = 880 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 148/623 (23%), Positives = 268/623 (43%), Gaps = 10/623 (1%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397 + + F + ++ L + + + L+ + + + Sbjct: 261 RVFGYYRLPEFGLNFVVGESVGLVLAPYEVYRRVALAGAMASTLLLGLLYYSLRRSMGER 320 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + + SL S + + + + P A G + + G + + Sbjct: 321 RRHMEEMKLASLVYSSSSEAMVVTSLDGTIIDVNPAFAAATGYTAKEVKGRPGHIVSG-- 378 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + L + V + GR EF +R D + + R + + + Sbjct: 379 AGNAAGLVERLRTTVASK-GRWSGEFSIRRKDGSEFPAYLTVDTYLAHAYGERRRVALIH 437 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+TE++++ E I A D LT +PNR+ F DRL ++ S ++ ++ ID+D++K Sbjct: 438 DMTEKRQAEEVIRHQANFDALTDLPNRRLFFDRLRQEIERSRGTQDV-LALLFIDLDRFK 496 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 ++ND LG GD +L+ RRI ++ D +ARL+G+ F +IL + ++ A A+ Sbjct: 497 EVNDTLGHDQGDLLLLEAARRIAASVRASDTVARLAGDEFTVILPAVGDAGVAGGIAQAI 556 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + IA P L + V+ASIG A+W + ++L A+ AM+ AK G N + F Sbjct: 557 LERIAAPYRLAGELVVVSASIGVATWPKDADNAEDLLVCADQAMFAAKEEGRNRWKVFTQ 616 Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + +R+ I +DL A+ + + L Y PI+ L ++ EALI+WDHP G I + Sbjct: 617 ALLQAERERLRITQDLRTALASGQFALHYQPIVDLRTGKVCKAEALIRWDHPVRGPIHPA 676 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGM 814 +F+ +AEE +I I ++L + W+ I +N + + + E Sbjct: 677 DFIAVAEESGLIIDIGRWVLTEALDQLARWQVLLGK-GFQISVNKSPVEFSAPAIGPESW 735 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++I + + + +E +M L R + GI + LDDFGT S LSYL Sbjct: 736 SSMIERRNVPVGSLVIEITEGSLMEQNADVMDQLSRFQAAGIEIALDDFGTGYSSLSYLR 795 Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 + D +K + S + T +A+ +II MA + +IA+ + E L GC Sbjct: 796 RLDIDYIKIDQSFIRSLTRGPDDVALCHAIISMAHALRIRVIAEGVETESQRDILVAAGC 855 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 DY Q P+ ++ + Sbjct: 856 DYGQGHFFCPPVEASAFEAFVSA 878 >gi|119945285|ref|YP_942965.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] gi|119863889|gb|ABM03366.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] Length = 610 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 131/444 (29%), Positives = 219/444 (49%), Gaps = 11/444 (2%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ K E + AF D LTG+PNR+ +DRL L + VM ID+D +K IN Sbjct: 164 EKSKRAEELNDLAFYDALTGLPNRRILIDRLHHALSSNVR-QGFESAVMFIDLDHFKDIN 222 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAI 635 D LG VGD +L+ + +R+ L+ D +ARL G+ F +IL + + + K A Sbjct: 223 DTLGHEVGDLLLIQIAQRLESCLRKCDTVARLGGDEFVLILENLDQKTIEAAAKANFIAD 282 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ P L E T SIG A + T+ +LK A++AMY AK GGN + F Sbjct: 283 KIFAALNKPYQLDMHECYSTVSIGLAFFGHEGKTAEGLLKQADIAMYQAKKAGGNTMRFF 342 Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 V ++ +L +AV S+ L Y + + G EALI+W HP+ G +S Sbjct: 343 NQKMQDIINVRTSLEHELRIAVAKSQFNLYYQIQMD-SSNRVWGAEALIRWVHPERGLVS 401 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 + F+ +AEE +I I +++E I W+ ++ + + +N+++K + + Sbjct: 402 PATFIPLAEETGLILPIGQWVIETACAQIKIWQKESLTRDLTLSVNVSAKQFRQTDFVDQ 461 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q+ + + S + +KL +ES+ + + + + L IGI +LDDFGT S L YL Sbjct: 462 VQSAVRRHAISANLLKLELTESLFQEDIKVTIATMNALNNIGIQFSLDDFGTGYSSLQYL 521 Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S + AI+++II MA ++ +IA+ + E + L G Sbjct: 522 KQLPLDQIKIDQSFVRDIAIDSNDRAIVKAIIAMAHILKIDVIAEGVETEEQRQLLLGKG 581 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C + Q + P+ L++ Sbjct: 582 CSFFQGYLFSKPIPIEQFEALIRS 605 >gi|54294243|ref|YP_126658.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens] gi|53754075|emb|CAH15548.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens] Length = 792 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 169/789 (21%), Positives = 325/789 (41%), Gaps = 46/789 (5%) Query: 182 KDTVNSFTLYR---GIIIGVASLLAIFLTIFYMVNRSSMLIP--TFAMAWVVLGYISIDF 236 + L+ I G A + I + V +LI F + L + F Sbjct: 23 IEKEQVKLLFDQVGMAISGEALAVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSMLLF 82 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL 296 + + W ++++SS + + F + + I + Sbjct: 83 HYNKQ---PTLFSTEKWLFLFNLSVASSGLAWGFASSIMIPASSTLHQIFVVFLITGVTA 139 Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356 S Y P+ + +V + F I+ KG V L+ + I M Sbjct: 140 AANSLYSPVRLSY-----FLFLVTAFVPFTIWLFSKGQ---VYLLLGFCGIIY---MGIM 188 Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 N I+ L + + +++ + ++ + + + D Sbjct: 189 LFISYYSNRILINTLKMRFKISNLNSTKDILEKKVVDR--TKELEKILALTKSTLESTAD 246 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDS 470 + D+ + + G++ G + + + F + Sbjct: 247 GILVVDLKGNIEFCNQQFLKMWGISPGFIESHNDTETIQYVLNQLKNPEE---FLKQIKE 303 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 E D + R + I+ + D+T + Sbjct: 304 LYNNPNQESFDELHF--KDGKIF---ERYSQPHWLDNKIIGRVWSFRDVT----LRTRLA 354 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D+LTG+PNR + DRL ++ N +V+ +DID +K IND LG GD Sbjct: 355 YQANHDSLTGLPNRTALYDRLDHAINYCKRL-NTSLSVLFLDIDNFKLINDSLGHDAGDI 413 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L +RR+ ++ D +AR G+ F ++L+ + A + K++A PI L + Sbjct: 414 LLYEFSRRLKGCIRHSDTVARFGGDEFVLLLM-TTEPKDVILVAQNILKAVAQPIKLPTQ 472 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-- 708 E+ VT SIG + + I +S +LKN++ AMY AK G N+ + + S + ++ Sbjct: 473 EVIVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQ 532 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 + A++N+E +++Y PI L + E+VG EALI+W HP G +S EF+ IAEE +I Sbjct: 533 TQIHNAIKNNEFFILYQPIYSLRNGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLIN 592 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 + ++L +W+ +P I I +N++ + L ++ E ++++ ++ P + Sbjct: 593 QVGEWVLRNACIQNKTWQ-LMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYL 651 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 ++ F+ES ++ L ++ ++GI + +DDFGT S LSYL PF+ +K + S + Sbjct: 652 EIEFTESTMIQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFNKLKIDRSFI 711 Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + +I+ +II MA ++E ++A+ + + + GCD +Q P+ Sbjct: 712 QNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKA 771 Query: 947 NSILKLLKE 955 + +KL+++ Sbjct: 772 DKFVKLMQK 780 >gi|149186877|ref|ZP_01865187.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] gi|148829544|gb|EDL47985.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] Length = 749 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 156/663 (23%), Positives = 286/663 (43%), Gaps = 36/663 (5%) Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 L + I++ + + Y + A ++ + +W Sbjct: 103 GLGGFAAATVATPGQFFMISILLSGMMGASAMSYGAIAMPVPAFVVPAGLGFLAVWVA-- 160 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIG--FTVIQHVLATGYFSQGIFSDGERQSLAV- 411 + + + + + +LI F+ + +A + E L + Sbjct: 161 -------FPDAPLATGSIATIAYVAVLIRGAFSNERSFIAKLRAEERATDSAETVRLLMN 213 Query: 412 ---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + D +W+ D V + + G + G +L D + R L Sbjct: 214 DFTEQASDWLWEIDGGLRIVNPSDRFIHVAGREGLQLSGK--AFLDLF---DETSERRQL 268 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 +S + RR + + + W + RP + G + G+A+D+T Q+++ Sbjct: 269 ESELRNRRVFRKLTLPL-TISGKRRWWALSARPCEANGG----FRGVASDVTAQREAEAR 323 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 I A D LT + NR F L L+ D R V+ +D+D++K IND LG AVG Sbjct: 324 INHMAHYDALTNLANRYLFNASLDHALNR--LLDRHRICVLYLDLDQFKGINDTLGHAVG 381 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L + +R+ L ++ARL G+ F ++L EN A + +++ P + Sbjct: 382 DALLREVGKRLENTLNGRGLVARLGGDEFAVLLQDENLDHVAMTIAHRIMENLRDPYVIE 441 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVM 706 EI + SIG A ++S+++K+A+LA+Y AK G V F + F R Sbjct: 442 GSEICIGTSIGVAFADPQGPSASDLMKHADLALYRAKELGRGKVVVFESALVEFALARRE 501 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ DL A+ + +L L + P++ L +I+G EAL++W HP+ G I EF+ +AE+ + Sbjct: 502 LEMDLRTALTDGDLRLHFQPLMDLQTNKILGYEALVRWHHPERGLILPDEFIPLAEQTGL 561 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + +++ A + + I IN++ L ++L + + ++ +PS Sbjct: 562 IVELGEWVIREAAATARLLPGE-----LTISINLSPAQLRSSQLLATVVSAVAHAGIAPS 616 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 R++L +E V + + E +L LR G+ + LDDFGT S YL PF+T+K + S Sbjct: 617 RLELEITEGVFLEDSEDCMRILRELRTFGVRIALDDFGTGYSSFGYLRRFPFNTIKIDRS 676 Query: 887 LMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + E I+R+I +A + ++ A+ I + L +GC+ Q + P+ Sbjct: 677 FVAELRESDDCRRIVRAISDLAHGMGMSVTAEGIEDVSQLSMLRDLGCEVGQGFLLGKPM 736 Query: 945 GFN 947 F Sbjct: 737 PFQ 739 >gi|167033233|ref|YP_001668464.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166859721|gb|ABY98128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 698 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 146/568 (25%), Positives = 247/568 (43%), Gaps = 15/568 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGS 444 ++Q +SQ + + + V D+ R+ + G S Sbjct: 132 LLQAKELAEQYSQEMAKLSQFLDSVIANIPASVIVQDLESQRILLANQQAERLFGGPGRS 191 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 M G + + D L +G E RV A + R N Sbjct: 192 MIGQLPG--ECLAPAAADYLEQQLARGARSPKGH-AAETRVDTARG-PRTLRSRTLLSQN 247 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G + +A D TE+ + I A D LTG+PNR F +RL L + + L Sbjct: 248 REGQADYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFNERLRQALVRGSENAKL 307 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + +D+D +K IND LG A GD +L L +R+ L+ D LARL G+ F ++L Sbjct: 308 TAALC-LDLDNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGL 366 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A + +I+ P + + +V SIG A + ++L A++A+Y A Sbjct: 367 EGRDAACNTAHRLINAISPPFQIEGHQFSVGVSIGIAIAPDDNDQAEQLLGYADMALYEA 426 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N E F V R +++ DL A+ +L L Y P++ + G EAL+ Sbjct: 427 KRNGRNRYECFDVELDVAARQRRLVETDLRTALHLGQLQLHYQPVVDQQTSSVTGYEALL 486 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+HP G + +F+ IAEE +I + L ++ SW + + +N+++ Sbjct: 487 RWEHPTRGMVMPMDFIPIAEETGLIHELGNRALNLACQEAASWDSEQ-----TVSVNLSA 541 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L + ++ + R++L +ESV++GN E + L L+ +G+S++LDD Sbjct: 542 VQFKNANLVHTVALALADSGLPAQRLELEITESVLLGNSEENVRTLRALKDLGVSISLDD 601 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920 FGT S L YL PFD +K + S + + R A I+R+I ++ ++ A+ + Sbjct: 602 FGTGYSSLGYLRSFPFDRIKIDKSFVHDMCDSREAMSIIRAITDLSNSLMIKTTAEGVES 661 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948 E ++ L GC + Q P + Sbjct: 662 EEQMRRLAAEGCSHFQGYLYGRPAPASE 689 Score = 48.8 bits (115), Expect = 0.005, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 37/126 (29%), Gaps = 3/126 (2%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 L + D ++ P G + + G + +R Sbjct: 11 YRLLIQSVVDYAIYLLTPEGIVANWNPGAQRAKGYHADEIVGQHYSLFYT--DAERAAGL 68 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L+ GR + D + I + + G ++ + + D++E+ + Sbjct: 69 PALNLEQARSTGRFEEMGSRLRKDGSAFLAHVVIEAVYDDAGQLVGFAKVTRDVSERHRQ 128 Query: 526 LEGILC 531 + +L Sbjct: 129 EQELLQ 134 >gi|83311070|ref|YP_421334.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82945911|dbj|BAE50775.1| Predicted signal transduction protein containing a membrane domain [Magnetospirillum magneticum AMB-1] Length = 820 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 148/561 (26%), Positives = 257/561 (45%), Gaps = 10/561 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + S AV S V A++ G +S ++ G L ++ Sbjct: 263 KAEASVRLLSQAVEQSPVAVAVVGGDGMVQYVNSAHASLTGHSSSAVVGKP---LSALYP 319 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + G LQ E +V D + W + ++ + Y+ D Sbjct: 320 GKAGAMLGDFWRTLLGQ-GELQGELQVNRQDGTWQWQQVHGSKVATPGEEGTHYLLQIED 378 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +T +K + A D LT +PNR LDRL +D++ D + ++ +D+D +K Sbjct: 379 VTLRKDQERRLQHQALFDGLTDLPNRVHALDRLAREIDMA-RDHGRKVGLLFVDLDGFKA 437 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD++LV R+ + ++AR G+ F +I+ + + A A+ Sbjct: 438 INDSLGHEYGDELLVLAAERLRQAAGDGGVVARFGGDEFLVIMGDMEDGAAAGEVAAAIV 497 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696 + P + R++ TASIG A + T +L+NA++AMY AK G N F R Sbjct: 498 DRFSQPFTISRRDLISTASIGLALYPEDGRTQQTLLRNADIAMYQAKLAGRNRFCFFTSR 557 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ R+ ++ +L AV + +LVY P++ + VG+EAL++W +P+ GN+ Sbjct: 558 MNEEAEARLRMEGELRRAVGTDQFHLVYQPLVAVATGRAVGVEALLRWSNPELGNVPPDR 617 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ AE +I AI +LE RD W + + + IN++ + D ++A Sbjct: 618 FIPQAETCGVIVAIGRMVLETACRDARRWVED-GHADLRLCINVSPRQFQDAGFLGDVRA 676 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ + SP+ ++L +E +++ LL L +G+ L++DDFGT S LSYL Sbjct: 677 ALAGSGLSPANLELEITEGLLLTERGDVDTLLRTLTDMGVKLSIDDFGTGYSSLSYLERF 736 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PFDT+K + S M G ++R ++ +I+ MA + +IA+ + + L + CD Sbjct: 737 PFDTLKIDRSFMIGMLERQERKVLVETIVAMASGLGLEVIAEGVETAEQMAHLAAINCDI 796 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + P+ I LL Sbjct: 797 AQGYLFSRPVPAGDISPLLDR 817 Score = 71.9 bits (175), Expect = 5e-10, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 9/138 (6%) Query: 395 YFSQGIFSDGERQSLAVLGS-----GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + GER + + D+++ D + +P+ AT+ G ++ + G Sbjct: 14 AGLHAAEAAGERIPAGLHAALLRDLPDVLYSVDAAGRFIWVSPNAATVFGYSAEELVGME 73 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L Y DR + ++ E +R D W I + + G I Sbjct: 74 AAAL-YAKPEDR---VGTVRRIRDAGGRAVRSEVEMRRKDGISIWAAIYACALMDGEGRI 129 Query: 510 LRYIGIANDITEQKKSLE 527 G DITE ++ + Sbjct: 130 TGINGAIRDITEIWQTRK 147 Score = 44.6 bits (104), Expect = 0.091, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 10/134 (7%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + +R + + + + T+ + + I Sbjct: 149 LGDSEDRFRRLSDVATEAI-CIHFQGKIIDMNKAFETLFAYSRDELLTMWA--WDVIDPR 205 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D ++++ YE R D M I + + + D+ Sbjct: 206 DISLAKSMVAQQYEAP-----YEVRGIRKDGSVFPMEIHSKHSRMGGDSVR--VTSIRDL 258 Query: 520 TEQKKSLEGILCNA 533 T+ KK+ + + Sbjct: 259 TQSKKAEASVRLLS 272 >gi|237748638|ref|ZP_04579118.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Oxalobacter formigenes OXCC13] gi|229380000|gb|EEO30091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Oxalobacter formigenes OXCC13] Length = 999 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 146/623 (23%), Positives = 267/623 (42%), Gaps = 34/623 (5%) Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 AW ++ + F+ + M V + +QH + Sbjct: 372 AWYILLLAFLVIVMTGLGM-----------------VFYMRHRHMQHKTERLRMELKQKA 414 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDR 461 + + D++ D + + G + M G IR D Sbjct: 415 LRQHYDYLSKYANDVIILMDGNGTMIEANDRSEKMFGKSRAEMIGQNIRCVFDL---KDT 471 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 F + L +E + + + I R + ++G L I DI+E Sbjct: 472 SVFEEKWMELKLEKG--LIFEAYGKHTNGSIFPVEISSRVI-ETDGR-LFVQFIIRDISE 527 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +KK+ E + +A D ++G+PNR+ F ++L + D +M +D+D +K +ND Sbjct: 528 KKKAEEMVWRHANYDQISGLPNRRMFTEKLFFETRKAQRSD-ASVALMFLDLDHFKDVND 586 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 +G VGD +L + R+ ++ D +ARL G+ F +I+ ++ + A + + Sbjct: 587 TMGHGVGDCLLKEASDRLRVCVRETDTVARLGGDEFTVIVSDIDDFKDVERVAQCILDEL 646 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 + P L + + ++ASIG + + +++KNA+ AMY AK GGN F S Sbjct: 647 SEPFTLEGQSVHISASIGITFFPQDAKDTHDLMKNADQAMYAAKSLGGNQYHYFTPSMQE 706 Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 R+ + DL +A+EN++ V+ PII L +I EALI+W HP G I+ + F+ Sbjct: 707 AVQKRMHMINDLHVALENNQFETVFQPIIDLKTGDICRAEALIRWHHPVHGLINPASFVP 766 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM-QALI 818 +AE+ +I+A ++ A+ WR +P + +NI+ + + + A + Sbjct: 767 LAEDTGLIQAFGDWVFLEAAKAASRWRK--YVPDFQVSVNISPVQFKNEGIDTNVWFAHL 824 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 P I + +E +++ E + L L GI + LDDFGT S L+YL + Sbjct: 825 KSLNLPPEAIVIEITEGLLLDIDEHTSNQLLALSDAGIEVALDDFGTGYSSLAYLKKLDI 884 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D VK + + +E+ + ++ MA ++ +IA+ + ++ L CDY Q Sbjct: 885 DYVKIDQMFVKNLTTSEEDRVLCEAMTVMAHKLDIAVIAEGVETLAQLRMLASFNCDYGQ 944 Query: 937 DSHVASPLGFNSILKLL-KERFP 958 +++ P+ +LL R P Sbjct: 945 GYYISGPVNDEEFEELLAASRNP 967 >gi|332528841|ref|ZP_08404815.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] gi|332041700|gb|EGI78052.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] Length = 779 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 139/592 (23%), Positives = 273/592 (46%), Gaps = 8/592 (1%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 ALV ++ +++ + + + + + + V + ++ D Sbjct: 178 AAALVLLFQVVSLIVSVLIHRAWRSQATALRALRFEKGLNQTIVRSAPLAIYTRDTEGRV 237 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P + G + G +P + + L V E + + Sbjct: 238 TAWNPAAEKLFGWTEAEVLGRFLPSVPL--ATEYQDEDKALRLRVIAGESIPDIEVQRQK 295 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + + + P+ + +G I ++ IA D+T +K+ + A++D LTG+PNR Sbjct: 296 VTGEMFDLSASLSPLRDDDGTISGFLTIAADVTARKQVERQVEFLAYRDVLTGLPNRSLL 355 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 DR + + + ++ +D+D +K IND LG A GD +L + RR+ + ++ D Sbjct: 356 QDRFAQAIARAERHHR-KVALLFLDLDHFKTINDSLGHATGDALLKEVARRLSDGMRESD 414 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 ++R G+ F ++L + I + +R+ + P+ E+++++SIG A + Sbjct: 415 TISRQGGDEFLVVLSDLEGTEMITPVLLKIRERLQQPLLFDGHELSISSSIGVALYPDDG 474 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + +LK A+ A+Y AK G N F ++++ D + +K L A+ EL L Y Sbjct: 475 LDFETLLKKADTALYRAKDAGRNQARFFDEQMNTEAVDHLRLKNGLHRALSRGELELHYQ 534 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P L ++G+EAL++W HP+ G IS + F+ +AE+ +I I +++ + ++W Sbjct: 535 PQFDLRTGAVIGVEALLRWRHPEEGLISPARFVPVAEDSGLIVPIGEWVIRQACAQAMAW 594 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 R PP+ + +N+++ ++ + + T +P ++L +ES+++ N ER Sbjct: 595 RQAGL-PPLLMAVNLSAVQFRRGDVQTIVAQALRDTGLAPELLELELTESILLQNTERVL 653 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903 + +++++G+ L++DDFGT S L+YL D +K + S + AI+R+II Sbjct: 654 EGVDQIKQLGVKLSIDDFGTGYSSLAYLKRFAVDKLKIDQSFVHDLARDSDNAAIVRAII 713 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 MA + IA+ + + L R GCD Q +A PL +L+K Sbjct: 714 QMAAGLGLRTIAEGVEDAEVLAVLRRFGCDEAQGYFLARPLPATEFAELVKR 765 >gi|241763941|ref|ZP_04761983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] gi|241366764|gb|EER61205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] Length = 741 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 137/612 (22%), Positives = 248/612 (40%), Gaps = 54/612 (8%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 H A S + A++G V+ D R +LG G + Sbjct: 140 HKQAQAQLSAALREKQALFDHAMVGI---VFLRD--RHLTRCNRHFEQMLGYGPGELATS 194 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + R + E + D +R + + ++ Sbjct: 195 PSRRWYASDAQWEEVGRRCYPVLAAGL--SFEGEIEMCRKDGTAVVCEVRSKLI-DAADP 251 Query: 509 ILRYIGIANDITEQKKSL---------------------------------------EGI 529 I I DITE+K++ E I Sbjct: 252 SEGSIWITMDITERKQTQAALALAHERLEQQVQDRTRELRETVDSLHSEIRDRKADQERI 311 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+PNR +R + L+ + V+ +D+D +K +ND LG VGD Sbjct: 312 YWLAHYDALTGLPNRTLLGERAEHAIRLA-RESGTPLAVVFLDLDHFKHVNDSLGHRVGD 370 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +LV + RR+ +++ D + RL G+ F ++L N+ A A ++++ + Sbjct: 371 ALLVEIARRLRAVVREKDTVCRLGGDEFVLLLPG-ANAHGAARVAGKLQEASRQYYQIDH 429 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMI 707 E+T+ S+G A + + ++A++AMY AK G N F + + Sbjct: 430 HELTMAPSMGIALFPGDGEDFDTLTQSADVAMYQAKLDGRNTFRFFTPEMQAQSVRALQL 489 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L A+E +L + Y P + L + +EAL++W HP+ G IS +EF+ IAE+ I Sbjct: 490 ENALRRALERDQLRMHYQPQMDLTTGRVHSVEALLRWHHPQLGTISPAEFIPIAEDSGQI 549 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I ++L + + +WRD+ + + +N+++ +L E + ++++ Sbjct: 550 LPIGEWVLRTALQQLKAWRDR-GFADLSMAVNLSAIQFRQPQLPEMVSQILAEMELPSDA 608 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +E V + +P + + +L G+ L++DDFGT S LS L +K + S Sbjct: 609 LELELTEGVAVDDPHTAAATMNQLHARGVRLSMDDFGTGYSSLSQLKRFQIFKLKIDQSF 668 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI+ +II MA+ + A+ + E + L GCD Q H ++PL Sbjct: 669 VRDLGNDGNDRAIVSAIIRMAQALGMRTTAEGVETESQLAFLREQGCDEAQGYHFSTPLP 728 Query: 946 FNSILKLLKERF 957 + ++ R Sbjct: 729 APELETFMRRRL 740 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 12/145 (8%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + Q + +G + R V A I G + + + + Sbjct: 21 LQRTLREQQTLLDSAGAGIVFMR-QRVVVRCNQRYAEIFGYEAPEQLAGLGS--ESFYP- 76 Query: 460 DRDNFRTILDSF--VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DR+ FR + + + E ++R + W + R + N I I + Sbjct: 77 DREAFRELGRDAYPAMSQGQTYRVERQMRRRNGDLFWGHLTGRLI-NPQDTAEGSIWILD 135 Query: 518 DITEQKKSLEG-----ILCNAFQDN 537 DI + K++ A D+ Sbjct: 136 DIDDHKQAQAQLSAALREKQALFDH 160 >gi|241206173|ref|YP_002977269.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860063|gb|ACS57730.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 717 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 138/599 (23%), Positives = 262/599 (43%), Gaps = 18/599 (3%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 + ++Q + + V V+ D+ Sbjct: 121 TFEVLTYGREVRFEGRAAILAIVQDRSEVNAARRQMSDTRSLLDSIVDNLPVGVFVKDME 180 Query: 425 RDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 D + I+G+ + + G + D FR + +E Sbjct: 181 ADGLYVLFNEACGDIVGMRAEHVVGRTD--RSLFPPSQTDAFREQDRRAFEANAA-ISFE 237 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGI 541 ++ AD + R + G RY+ GI+ D+TE++ + A +D LTG+ Sbjct: 238 ETMQRADGVPRILRTVKRALPTPEGHAPRYLLGISQDVTEERAVEAKLAHLATRDPLTGL 297 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR +F + + + D ++ ID+D +K IND G A GD +L ++ R+ + Sbjct: 298 PNRAAFSEHINQRAVEATADS--AIALLYIDVDHFKHINDSKGHAAGDALLCQVSERLLQ 355 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D++ARL G+ F ++L + + FA + ++++ +L VT S+G A Sbjct: 356 LAGEGDLVARLGGDEFAVVLE-LDEPERAGRFAQRLLQTLSHAFDLDGAREHVTCSVGIA 414 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719 + ++++A+LA+Y AK G + + + + + +L A+E + Sbjct: 415 LAPDHAGDADVLMRHADLALYAAKESGRSIYRFYETEMRLAAQRRHVMTAELWEALEKRQ 474 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y PI++L ++ I G EALI+W HP+ G ++ EF+ +AEE +I I +++ Sbjct: 475 FELHYQPIVQLDNDGIGGFEALIRWRHPERGLVAPMEFIPLAEETGLIVPIGDWVIREAC 534 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 R W + I +N++ L + A + +T + R+++ +ESV + Sbjct: 535 RAAGGWP-----VHLRIAVNLSVSQFRHASLLSTVVAALDETGLTADRLEIEITESVFLT 589 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897 + ++S L L+ +G+ + +DDFGT S LSYL PFD +K + S ++G +A Sbjct: 590 DADQSLPRLRALKALGVRIAIDDFGTGYSSLSYLRSFPFDKIKLDRSFVSGIETDAGNLA 649 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I+R+++ + T +A+ I E +++L G +Q + P+ + L+ R Sbjct: 650 IVRAVVGIGSGFNATTLAEGIETEEQLQKLRAEGFSEVQGYLLGRPMPQHEAEALIDGR 708 >gi|85374283|ref|YP_458345.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594] gi|84787366|gb|ABC63548.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594] Length = 909 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 161/727 (22%), Positives = 305/727 (41%), Gaps = 43/727 (5%) Query: 262 SSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLY 321 +L+ + + A Y+ + A+ F ++ + S R L++ Sbjct: 78 FMALLPLVAAVVGSLLTQALPSYLAIAAFVSSALFFGIASKVSLWERSFTREVLSAAAAA 137 Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL-------------------WMAITKRL 362 ++ + G + ++ + I +G+ Sbjct: 138 VAVTVVPSLLYGLALGLWVLLGDLPIAAGVMGVISFNAISATLLTGRPRPMYACLAASWA 197 Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGER-QSLAVLGSGD---- 416 +++ + V G ++ A + ER + A+ D Sbjct: 198 PLALMEGNPTNVTMFAVFAAGLAILSRYQAKIDRERAERRQTDERILNRAIDILRDYEET 257 Query: 417 ---IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 W+ D + +A LG + + G L + ++R+ + + Sbjct: 258 GNGWFWETDRRGLLTYVSGPVANRLGTKAKRLIGRPITELFDLAHDNREG-ERTIAFHLS 316 Query: 474 YRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R E V+AA + W I RP+ +S + + G D+TE+++S E Sbjct: 317 ARSAF--QELPVKAAGIEEERWWSISGRPIFDSFQNFCGFRGSGTDLTEKRRSQEHASRL 374 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D+LTG+ NR L IL + V ++D+D++K +ND LG GD +L Sbjct: 375 AHFDSLTGLANRHQMSQSLEKILASPKVANR-ECAVFLLDLDRFKHVNDTLGHPAGDALL 433 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + R+ + + RL G+ F +IL K++ A + +S++ P ++ + + Sbjct: 434 KQVAERLESTVGNMGRVGRLGGDEFKVILPGRVPKDKLSYLAAGIIRSLSQPYSIEGQRV 493 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKED 710 + SIG A + +S ++++NA+LA+Y AK G + +R ++ D Sbjct: 494 VIGVSIGIAISPENGESSEDVIRNADLALYAAKDGGRGRFHFYSNDLHSAAEERSQLERD 553 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A+ +L L Y P+++ E I G EAL++W HP+ G IS ++F+ IAE+ +I+AI Sbjct: 554 LREAISEGQLELHYQPVVQTATERIAGFEALLRWKHPQHGYISPAKFIPIAEDTGLIQAI 613 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 + + D+ SW I +N++ + +L + + +++ +P+R++L Sbjct: 614 GEWAIRTACHDLASWPKS-----IRCAVNVSPLQFSNEQLPTIITSALAQAGVAPTRLEL 668 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ESV + + E + + L IG+ L LDDFGT S L YL PF+ +K + S + G Sbjct: 669 EITESVFLNDDEGTDAMFAALSGIGVRLALDDFGTGYSSLGYLKTAPFNKIKIDQSFVRG 728 Query: 891 ST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 +T + AI+ SI +A+ + A+ + ++ + GC +IQ PL Sbjct: 729 ATVPGSRNGAIIASITSLAQELGMDTTAEGVETLDELDLVRMHGCSHIQGYIYEKPLNKA 788 Query: 948 SILKLLK 954 K L+ Sbjct: 789 EATKRLE 795 >gi|313497513|gb|ADR58879.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida BIRD-1] Length = 861 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 141/564 (25%), Positives = 265/564 (46%), Gaps = 15/564 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 +Q + + +R + D +W+ D + + A + G G N L Sbjct: 299 NQALEASEQRFRAVAESASDWIWETDRHQRVTYLSQRFANVTGYPVDGWLGHPLNQLLAC 358 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + L + + L+ +R + Q + I R + +G ++ + G A Sbjct: 359 DTTPLSPWLDALATADPQQLANLRCTYR--DQNGQNRYCRISARAIW-RDGKVIGFRGTA 415 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT++ + I + D LTG+ NR L L + L ++D+D + Sbjct: 416 SDITDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGSDSPPLTLL--LLDLDNF 473 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG A GD VL + R+ + + D++ARL G+ F ++L +NS +I F Sbjct: 474 KPINDSLGHAAGDAVLQEVATRLRDTTRDGDLVARLGGDEFILVLSGMDNSSEIDRFCAR 533 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + + PI + + + ASIG A + + E+++ A++A+Y AK G N F Sbjct: 534 LIGLLQQPIVFESQPLHIGASIGVAQTRNQGFDAGELIRCADIALYQAKADGKNTWRYFV 593 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ R ++ DL A+ N E L Y P RL D IV +EAL++W HP+ G + Sbjct: 594 AEMNQQIQYRRQLENDLRRALRNEEFELHYQPRYRLDDLRIVAVEALVRWRHPQEGLLGP 653 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I A+ ++L R W + + +N++ L +++ + Sbjct: 654 DTFIPLAEQSDIIVALGRWVLREACRTAHDWPA-----DVLVSVNLSPAQFLRSDVVADV 708 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ T + R++L +E+V++ + E + + L+++G+ L +DDFGT S L YL Sbjct: 709 REILLDTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLR 768 Query: 875 YIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PFD++K + ++G A++++II + + + T+ A+ + E +K L + Sbjct: 769 TYPFDSIKIDKRFISGLNNNGGSDRAVVQAIINLGEAMGLTVTAEGVESEHQLKALEKDR 828 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C +Q +++ PL + LL + Sbjct: 829 CHEVQGYYLSMPLDSAGLAALLHQ 852 >gi|330823749|ref|YP_004387052.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|329309121|gb|AEB83536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alicycliphilus denitrificans K601] Length = 816 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 125/578 (21%), Positives = 257/578 (44%), Gaps = 10/578 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + + + S D ++ D P +LG A+ + G Sbjct: 241 YSFRDISRQAEVQAGLRLAARVFESSLDAIFIADERHAVARINPGCEQLLGAAAQGVVGR 300 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L + +D + F + G + E R+R ++ + + + + G Sbjct: 301 RVTALFAMAQDDAE-FMAEVRQGWEQ-AGFWEGELRLRQEEDAHCCVQLSWVALRDDAGA 358 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + IG D++ Q + + I A+ D LTG+PNR R+ ++ ++ + Sbjct: 359 VAQSIGFMRDLSVQHAAQKRIEELAYSDALTGLPNRLPLNKRVAAAIE-ASRGHGGGFAI 417 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D++K +ND LG GD VL + R+ L+ D+L RL G+ F I L ++ Sbjct: 418 LFLDLDRFKNVNDSLGHPFGDRVLKLVAERLQGCLRQSDMLCRLGGDEFVIYLHD-ADAA 476 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A +++ + P L E ++ SIG + + +++K+A+ AMY K RG Sbjct: 477 IAESVARRVQEEMLRPFMLDEMGFSIQCSIGMSLYPQDGDALDDLIKHADTAMYRVKERG 536 Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 ++ R+ ++ + A+ + + + Y P + + IVG EAL++W Sbjct: 537 RGSYGFYQPQMNAHLLSRMKMEHAMRQALNHGHMAVHYQPQVDMATGCIVGAEALVRWTD 596 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P++G +S F+ +AEE I + +++E+ ++ W P+ + +N+++ + Sbjct: 597 PEFGVVSPGTFVPLAEESGYIVTLGAWVMEQAVKEAAHW--MGCGTPLVVSVNVSALEFR 654 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 E + AL+++ ++L +E+V++ + + + +L L ++G+ L++DDFGT Sbjct: 655 QAGFVERISALLAQYGLPARWLELELTETVLLQDAQEMQQVLDALARLGVGLSIDDFGTG 714 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L+YL + +K + S + G AI+++I+ M + + ++A+ + + Sbjct: 715 YSSLAYLKKLTIHRLKIDKSFVGGLPGDGGDCAIVQAIVSMGRALRIGVVAEGVETQAQR 774 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 + L MGCD Q A + + E K Sbjct: 775 QALQGMGCDCYQGFLCAPAMPAADFRVRMAEPATGAKR 812 Score = 43.4 bits (101), Expect = 0.21, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 65/265 (24%), Gaps = 28/265 (10%) Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 S A + ++ I A+ L GM L+ + Sbjct: 7 SFAAIWNGIDLAAWLVDGHALQIRHANEAAARLVGRSVADMEGM----PVHGLVVTPEDL 62 Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG--------------FTVIQHVLAT 393 W + ++ G LV + + +Q Sbjct: 63 IFWGQSHAGIAAGIHSHTWVRNMHSGNLVPVDRRVLAIQASEGDPADRYLLLTMQDRSEH 122 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + S + + D V ++ + +A I L + + Sbjct: 123 EASQRELESLLSELRATLDSAADGVLTCNLHGEIRAFNQRLAQIWQLPR-ELLLRRDDAA 181 Query: 454 PYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 +H+ D + +R L + +R + R P G Sbjct: 182 IRVHMESQVLDAEAYRLRLAAIAHEPMLETTDILHLRNG----MTVEQRSVPQL-IQGRP 236 Query: 510 LRYIGIANDITEQKKSLEGILCNAF 534 + DI+ Q + G+ A Sbjct: 237 AGRVYSFRDISRQAEVQAGLRLAAR 261 >gi|66045221|ref|YP_235062.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255928|gb|AAY37024.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 730 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 152/584 (26%), Positives = 272/584 (46%), Gaps = 26/584 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451 + + E+ + A S D + +I R V + + G ++ + G + Sbjct: 154 AQVALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFSRLTGFSAHEVLGRTAHEVG 213 Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W + R++ L + E R + I + ++ +N Sbjct: 214 IWTDTLQ---REHMLEELR----QKGRVHHREMDGRDKHGAPLVLDISVEFITLNN--TA 264 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + A DI K + I A+ D LTG+PNR LDRL+ + L NLR ++ Sbjct: 265 CLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQ-HQNLRGALLF 323 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK- 629 +D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ S Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDE 383 Query: 630 ----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + A +R +A P+ L + VT SIG +T +++LK A++A+Y AK Sbjct: 384 VTRQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAK 443 Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + F VS + S R+ ++ DL LA+ +E +L + + +E I G EAL++ Sbjct: 444 DCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLR 503 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801 W HP++G ++ +F+ I EE MI + +L + Q +P + +NI+ Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGVNIS 563 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L ++ E ++ ++ S +KL +E +V+ N + + L + L+ +G+S +D Sbjct: 564 PRQFLQHDFIERVERSLTLHQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMD 623 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P DT+K + S + + I+R+I+ MA+++ +IA+ + Sbjct: 624 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVE 683 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + L ++GC Q + PL LL+ + P + Sbjct: 684 TSEQLAFLEKVGCYTYQGYLFSEPLPGPQFESLLELKRPAQQPA 727 Score = 99.3 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 8/165 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 L+ + + +R LA+ + WD DIVR+R+ + A + G+ + Sbjct: 13 TVQTASARLSLKDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQASARAALLHGMPA 72 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + + +R R I + + + LQ +R + + + R R Sbjct: 73 RTFDESGGQFFGSLPAEERRRMRAIYAAALETGQDCLQVTYRFQLKNGTSRLLEGRARIY 132 Query: 503 SNSNGDILRYIGIANDITEQK-----KSLEGILCNAFQ---DNLT 539 + G +R G DIT+Q ++ E AF D++T Sbjct: 133 RDEQGQPVRLSGTLMDITQQCAQVALEASEEKFAKAFHSSPDSIT 177 >gi|170706903|ref|ZP_02897361.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|170128321|gb|EDS97190.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] Length = 593 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 144/589 (24%), Positives = 275/589 (46%), Gaps = 11/589 (1%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L L + V + S+ + ++ D ++ D+ + Sbjct: 6 LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGVFLNV 65 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 + +LG + + G I D+ + L+ LQ + D Sbjct: 66 NKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQESASLQLSSQY--KDG 121 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + + I P+ +G I + DIT KK E I AF D +T I NR F + Sbjct: 122 FTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKK 180 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L I+ + T ++ ++ +D+D++K IND LG + GD +L + +R L L+ Sbjct: 181 LKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEEVAKRFQSCLPSHTHLS 239 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 R+ G+ F I++ + + + + + + + + E +T++ SIG A + S I + Sbjct: 240 RIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTLSLSIGIAIYPHSGIDT 299 Query: 671 SEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728 + +LKNA +AMY AK + ++ R+ +++DL A++N EL+L+Y P + Sbjct: 300 ATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQPQV 359 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 +I+G EALI+W+HP+ G IS EF+ IAEE I I + L++ + W Sbjct: 360 DSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRWHTS 419 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + I +N+++K+ + + + A ++ T S + L +E + M + + + L Sbjct: 420 -GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLELTERIAMMDERETLIKL 478 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMA 906 L+ +G+ +++DDFGT S L+YL P DT+K + + + + + I+++II +A Sbjct: 479 RTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLA 538 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++IA+ + + + L + C +IQ + + P+ +S LLK+ Sbjct: 539 NTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFSTLLKK 587 >gi|196044463|ref|ZP_03111698.1| sensory box/ggdef family protein [Bacillus cereus 03BB108] gi|196024498|gb|EDX63170.1| sensory box/ggdef family protein [Bacillus cereus 03BB108] Length = 906 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 312/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 659 NAIQNEELFLYYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 719 WTLQQACEQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVTFLQKNKCQFIQGYYYSKPIHINAFT 897 Query: 951 KLLKE 955 +LLK Sbjct: 898 ELLKS 902 >gi|326797377|ref|YP_004315197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] gi|326548141|gb|ADZ93361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] Length = 993 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 151/771 (19%), Positives = 295/771 (38%), Gaps = 23/771 (2%) Query: 199 ASLLAIFLTIFYMVNRSSMLI--PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRAC 256 A+LL ++ +++ + + Y I G+ + V S LL A Sbjct: 221 AALLFFAFYSNFVTLAAAIFLTGVMSYFSVSYNLYTPISSGYQNNDVFFYSPLLLTLLAP 280 Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGY-ITFSGIACIAILFCMSFYYPMVTASIARITL 315 + +++ S + L + + Y + I M++ + ++ Sbjct: 281 TLLSILSMRMNKTLSDLETSEASFRALYEKAPIAMHTINTAGVMTYVSDRWLSMLSFKRE 340 Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375 I F+ + +R + + DI A+V + Sbjct: 341 EVIGKRSIDFLTPSSREKAKREYFPELISTGYLTDKEVQAIKKDGSII-DIDISAVVDPI 399 Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 + ++ + + + + + E + + GD V D P Sbjct: 400 KNNGAIHAIAALKDITEEVHLREALAEEKELLEITLHSIGDGVIATDKEGCITFLNPVAE 459 Query: 436 TILGLASGSMHGPIRNWLPYIHINDR-------DNFRTILDSFVGYRRGRLQYEFRVRAA 488 +L L+ + G + +++ D+ D +L S R + ++ Sbjct: 460 QVLQLSKNDVIGTK--FEQTVYLFDQRTGNIIDDLISRVLASESTQRIDQFDAA--IKNH 515 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 Q + I P+ N+NGDI+ + + D+TE + + A D LT +PNR + Sbjct: 516 RGQICCIQDSISPIKNNNGDIVGTVMVFQDVTENRNMSRQMEYLAHHDMLTKLPNRALLI 575 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 ++L + + ++ +DID K +ND G GD++L+ I ++++ D Sbjct: 576 NKLLELCPHDDIEPEESFALLFVDIDNLKSVNDQYGHKAGDELLIDTVNNIQQVMRENDF 635 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 LAR+ G+ F +I F + KS+ P+ + +I + S+G + + + Sbjct: 636 LARIGGDEFILISPHYEEKSTFEPFCRKLIKSVCRPMTIEGHDIQTSVSVGVSFYPDNGC 695 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHP 726 + +L +A+ AMYH K + N + I+E + + E L + P Sbjct: 696 DADTLLSHADAAMYHVKAKNKNDYRFYTPEFDKETIWLAEIEEKMRQGLPRKEFVLYFQP 755 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 II + EAL +W + +I F+ IAE+ +I ++ +L + I Sbjct: 756 IIDSSSHTVTYFEALCRWHNDDAIDIMPDIFIPIAEQSGLIGSLTTQLLHQACSFIKELD 815 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 + I I NI++ L + ++A+ K PS +E+V+M N +R+ Sbjct: 816 ES----NIRISFNISATHLQSQDFMSEIKAVFDKENVVPSCFIFEITETVLMQNWKRNVS 871 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIP 904 LL L+ +G+ + +DDFGT S L YL P D +K + + + +I+ Sbjct: 872 LLNDLKLLGVEIAVDDFGTGYSSLGYLKRFPVDILKIDREFIRDLHHDAKNRIFVSAIVS 931 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 MA + I+A+ + + L M C Q + + PL +L+ L Sbjct: 932 MASALSLRIVAEGVENKEQASILAEMNCFLQQGYYYSKPLPILKVLRHLNS 982 Score = 67.3 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 29/311 (9%), Positives = 76/311 (24%), Gaps = 22/311 (7%) Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH--WN 276 + + L ++ L S + + S ++ Sbjct: 132 PAFLGSIVAAMMFSGSTNQHLIEIWLLS--------FISMLVSAVSFFPLGIYLINHSLK 183 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 R + A+L +S + + +Y+ F+ Sbjct: 184 RALDDLVNPKGFIAVGCAVLVTISVFSTLPYPYAYLSAALLFFAFYSNFVTLAA------ 237 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A+ L + + + +ND+ + + +L L+ ++ Sbjct: 238 AIFLTGVMSYFSVSYNLYTPISSGYQNNDVFFYSPLLLTLLAPTLLSILSMRMNKTLSDL 297 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + + ++L + G + ++ Sbjct: 298 E----TSEASFRALYEKAPIAMHTINTAGVMTYVSDRWLSMLSFKREEVIGKRS--IDFL 351 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + R+ + + E + D + I N + I Sbjct: 352 TPSSREKAKREYFPELISTGYLTDKEVQAIKKDGSIIDIDISAVVDPIKNNGAIHAIAAL 411 Query: 517 NDITEQKKSLE 527 DITE+ E Sbjct: 412 KDITEEVHLRE 422 >gi|237653310|ref|YP_002889624.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera sp. MZ1T] gi|237624557|gb|ACR01247.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera sp. MZ1T] Length = 1093 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 147/618 (23%), Positives = 274/618 (44%), Gaps = 22/618 (3%) Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 AW I + + M L + + ++ +Q + ++ Sbjct: 489 AWGTIAVGVLTSAMLGALLLITTGNRRRIQA-----LVEHRTAELQAASVRLHENRAALI 543 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 D +R + W+ RD + + ++ +L +G + + + + I R Sbjct: 544 DAQRI------ARLGSWETLCARDGLHASDELHLLLDSTAGDL-NSLADLIDAIAPASRA 596 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 L+ GR+ + + + I + G + R G A D+T Sbjct: 597 ALTDALERAATEP-GRIMLDCNTDSLPMRTLQFRIEGEHV---GGRLRRIRGTAQDVTAL 652 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 +++ I A D LTG+ NR ++ D +L +A D+ R V+ +D+D +K +ND Sbjct: 653 REAEARIRYLARFDPLTGLLNRSAWQDHAQDVLRHAARHDD-RCAVLFLDLDDFKTVNDS 711 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG A GD +L + R+G ++ D++AR+ G+ F I+L ++ + A A + ++A Sbjct: 712 LGHAAGDRLLAQVACRLGGCVRAEDLVARIGGDEFVILLSRLAHAEEPARVAERVLDALA 771 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P+ + + + V ASIG A + + +LK+A+ AMY AK G N F + Sbjct: 772 RPLQIDSQPLRVGASIGIALYPADGGEIDTLLKHADTAMYEAKESGRNAYRFFLPEMTQR 831 Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + + +L A+E+ +L L Y P I + G EAL++W HP+ G + F+ Sbjct: 832 VTRRLQTEAELRKAIESGDLRLHYQPQIDAASGRVYGCEALVRWQHPERGLLPPDRFVPF 891 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE+ +I + ++L + WRD PP+ + +NI++ + + ++ + Sbjct: 892 AEQSGLIVPLGEWVLREACLQQVRWRDAGL-PPLDVAVNISALQFRRRDFVATVARVLGE 950 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P+RI+L +ES +M +L +G++L LDDFGT S LSYL +P Sbjct: 951 TGADPARIELEITESALMDATPELVASFDQLVALGLTLALDDFGTGYSSLSYLKRLPLRR 1010 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + G + AI + + +A+++ ++A+ + E L + GC +Q Sbjct: 1011 LKIDRSFVDGLPDNPEDAAITSATLSLARDLGMEVVAEGVETEDQRGYLCKRGCRAMQGY 1070 Query: 939 HVASPLGFNSILKLLKER 956 + PLG +E+ Sbjct: 1071 LFSRPLGVEEFGTWFEEQ 1088 >gi|49477748|ref|YP_036640.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329304|gb|AAT59950.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 912 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 153/771 (19%), Positives = 301/771 (39%), Gaps = 54/771 (7%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 165 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 220 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 221 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRDYFIINPTFGKKLLVI 279 Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 + I + + ++ + + V ++I + Sbjct: 280 F-----------------PYLAVVILIGFTLKEQTSSSTLITGNCIAFVFVLIRHTIVRM 322 Query: 388 QHV-------LATGYFSQGIFSD--------------GERQSLAVLGSGDIVWDWDIVRD 426 Q+ + Q + ER D + D Sbjct: 323 QNKDLTETLKVFNSQLEQKVSQRTADLITKSNDLVINQERFKSLYEYHPDPILTIDSNGT 382 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + + +LG SG + G DR L G R + RV+ Sbjct: 383 VLNINQAGSMLLGKNSGELIGKEC--FSIFLDEDRSELEAALQE--GKRCSSTSLQLRVK 438 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + G + DIT K+ + I AF D +T I NR Sbjct: 439 NNNEKDIHFWCVTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIF 498 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F L ++ + ++ ID++++K IND +G ++GD VL + +R L Sbjct: 499 FQQELEKSIERAQKTQG-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPS 557 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 LAR+ G+ F +++ + ++ + + + P + + ++ SIG A + Sbjct: 558 ISLARIGGDEFAVLVHNHT-EHQLMNLCETLFRITEEPFVVNQHSFYLSLSIGIAMYPFG 616 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724 I ++ +L++A++AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y Sbjct: 617 GINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLY 676 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P + +++G EALI+W HP+ G IS EF+ IAEE I +I + L+ R + Sbjct: 677 QPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKE 736 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + + IN+++ + + + ++I + + I L +E + M + + + Sbjct: 737 WHSA-GYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKET 795 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 L L+ G+ L++DDFGT S L+YL P DT+K + + I+++I Sbjct: 796 LSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 855 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I +A + +IA+ + + + L + C IQ + + P ++ + L Sbjct: 856 ISLAHTLNMKVIAEGVETKEQLTVLQQNACYLIQGYYYSKPANEDAFINFL 906 >gi|91784306|ref|YP_559512.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia xenovorans LB400] gi|91688260|gb|ABE31460.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia xenovorans LB400] Length = 769 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 140/569 (24%), Positives = 259/569 (45%), Gaps = 13/569 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 +Q + E L V + + + P IL + I+ + Sbjct: 192 MAQRLAHSEEHHRLVVDHLIEGIVVQSRAGIVLACNPSAQRILRATPQIVGRSIQTVMVR 251 Query: 456 IHINDRDNFRTIL---DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILR 511 + D + + + + L + W+ + P+ + + Sbjct: 252 AYHEDGSVVTEAVRPTNQVLATGKPMLGVTIGLELIGGDIVWITENVVPIIKAGESEPSS 311 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL---SATDDNLRPTV 568 + DI +++ + A +D+LTG+ NR +RL + L S + + V Sbjct: 312 VLISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTSSGMGELVSVAV 371 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D +KK+ND G GD +L S+ R+ + D LAR+ G+ F I++ + N+ Sbjct: 372 LFVDLDGFKKVNDTAGHEAGDALLCSVAERLAACISPEDTLARVGGDEFVIVVSAYENTG 431 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + A + IA+P + + E + ASIG + + + +L+NA+ AMY+AK RG Sbjct: 432 HLIGLAQRILDMIAVPFAVADNEYYLGASIGISRFPEDGQDVATLLRNADSAMYYAKQRG 491 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N+ + F R + I++ L A+ +EL LVY PI+ D +G EAL++W + Sbjct: 492 RNNFQFFTAELNRQLQRRFTIEQSLRRALAGNELSLVYQPIVDSQDGRTIGAEALLRWYN 551 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 + GN+S EF+ +AE+ +I I F+L R + WR P + + +N++ + Sbjct: 552 SELGNVSPGEFIPVAEDAGLIVEIGNFVLTRACEQVAQWRRTLA-PELIVAVNLSPRQFN 610 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L E +Q + +T P+ ++L +E ++M + E +L L +G+ +++DDFGT Sbjct: 611 D-GLVERIQRCLLQTGLEPAALELEITERLLMSDSETVLPMLSALNAMGVRISVDDFGTG 669 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL P +K + S + G IAI ++++ MA ++ + A+ + Sbjct: 670 YSSLSYLKRFPLHNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQA 729 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953 L + CD Q + P+G ++ + L Sbjct: 730 AFLRAIDCDKQQGYFYSRPVGASAYARSL 758 >gi|307822896|ref|ZP_07653126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307735671|gb|EFO06518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 1171 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 132/574 (22%), Positives = 261/574 (45%), Gaps = 14/574 (2%) Query: 389 HVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 L + + +R + + + + D R+ + P +I G + + G Sbjct: 588 MRLRRDISKRKQVQEEQRMAASVFASTQEGILITDAQRNIIDMNPAFGSITGYSRDEILG 647 Query: 448 PIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + L +H D + + + R+G + E R + + I +++ Sbjct: 648 KKPSLLKSGLH--DTSFYENMWRAI--NRQGYWRGEVWNRKKGGEIFAEWLTISAVADQQ 703 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G I YIG ++DIT+ K+ + A D LTG+PNR DR+ + D N Sbjct: 704 GKITHYIGTSSDITQLKEQERKLELMAHYDPLTGVPNRILLADRMHLAFAQTKRD-NCLM 762 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V +D+D +K +ND LG GD +L+ + RI L+ D +ARL G+ F +L+ Sbjct: 763 AVGYLDLDGFKPVNDRLGHEAGDQLLIEVALRIKNALREGDTIARLGGDEFVFLLLGLEK 822 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + I+ P++L + ++V+ASIG + + +L++A+ AMY AK Sbjct: 823 VEDCETTLHRLLEVISEPVSLKNQAVSVSASIGISIFPEDNTDPDTLLRHADQAMYQAKQ 882 Query: 687 RGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + + R + + A EN E L + P + + + G EALI+W Sbjct: 883 EGKNCFHIYNLELDRQLHSHREALNRIEQAFENEEFELFFQPKVDMQQGIVFGAEALIRW 942 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G + +F+ + E +I ++ +++++ + + +W+ Q + I +N+ ++ Sbjct: 943 RHPERGLVMPGDFLPLLENHDIITRLDAWVIDKALQHMENWQSQGLQ--LQISVNVTARS 1000 Query: 805 LLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L ++ + + P+ +L E+ + + + ++ + +G+ LDDF Sbjct: 1001 LQTDDFILQLYYAFERHPSIKPAHFELEILETQALLDLSLTSQVIKDCQTLGVQFALDDF 1060 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL ++P +T+K + + + E +AI++ +I +A++ +IA+ + Sbjct: 1061 GTGYSSLSYLKHLPAETLKIDQTFVRNMLENEDDLAIVQGVIGLAESFRRQVIAEGVESI 1120 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L +MGC + Q +A P+ + + + E Sbjct: 1121 EHGSALLQMGCHHAQGYGIAKPMPASDLADWVNE 1154 >gi|297537599|ref|YP_003673368.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297256946|gb|ADI28791.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylotenera sp. 301] Length = 1321 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 140/613 (22%), Positives = 264/613 (43%), Gaps = 17/613 (2%) Query: 352 IGLWMAITKRLDNDIIQP--ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD-GERQS 408 L + + + I V I ++ ++ + + E Sbjct: 686 FSLEFRMRHQDGSWIWVYDHGRVMERSADGAPIRVLGTHMDISKRKATELLANSNAELLR 745 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + W+ ++ + + I I + + I + + + + + Sbjct: 746 RTSDMAKVGGWELNLATMSLYWSEGIKRIHEV-ADDYVPEITKVMNFYTLESKTRISAAV 804 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ + E + A W+ + + + NG ++R +G DIT+QK + + Sbjct: 805 NNAIEN-GLSWDIELELITAKKNHKWVRAQGSAI-DENGKVVRLVGAFQDITQQKTAEDA 862 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 I AF D LT +PNR+ +DRL L SA ++ ++ ID+D +K +ND LG +G Sbjct: 863 IKQLAFYDVLTQLPNRRLLIDRLERALVSSARSESY-GALVFIDLDNFKTLNDTLGHDMG 921 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFAIAMRKSIAM 643 D +L + R+ L+ D +AR G+ F ++L + + + + ++ Sbjct: 922 DALLKHVALRLQSCLRDCDTVARFGGDEFVVMLENLDLEPTAAKSHVEMVGAKIIHALNQ 981 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 ++ T S+G + T E LK A++AMY AK G N + F + Sbjct: 982 SYEIVPDGHYSTPSLGATIFYGKNDTVDEALKRADIAMYQAKSAGRNCLRFFDPEIQANM 1041 Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + E L + N++ L Y P I + G EAL++W+HPK G IS EF+ +A Sbjct: 1042 DTKASLVETLRYGIGNNQFVLHYQPQID-RAGVLTGAEALVRWNHPKQGLISPLEFIPLA 1100 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE+ +I + ++LE + ++SW + + + IN++++ + ++S T Sbjct: 1101 EEMGLILPLGKWVLETGCKQLVSWAGSKDTEHLNLSINVSARQFHQPNFVAQVLDVLSAT 1160 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 +P R+KL +ES+++ + + + L+ GI +LDDFGT S LSYL +P + Sbjct: 1161 NVNPQRLKLELTESMLVDDMDDVIAKMTLLQSAGIRFSLDDFGTGFSSLSYLKQLPLFQL 1220 Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + S + I R+I+ +A ++ ++IA+ + E L +GC Q Sbjct: 1221 KIDKSFVRDVLSDQNDAVIARTIVALASSLGLSVIAEGVEVEGQRDFLEGIGCYEYQGYL 1280 Query: 940 VASPLGFNSILKL 952 + PL Sbjct: 1281 FSRPLSIEDFEDY 1293 Score = 131 bits (329), Expect = 7e-28, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 2/197 (1%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV-IQHVLATGYFS 397 + + I + I L F+ ++ S Sbjct: 545 YSLMGFESFIGLPILVDEQRYGLEFQSYQVHFNGFDATEIDFLHLFSRWAVSLIRRHNLS 604 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + I ER LA+ G+ +WD D+ + A +LG + + ++ +H Sbjct: 605 EQITKGNERLDLALKGASLGLWDLDVPTGKAFYNARWAEMLGYQLSEIEQSMDAFVKLLH 664 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIA 516 +++D +++ EFR+R D + W+ R M +++G +R +G Sbjct: 665 PDEKDEVLAAVEAHFKGETADFSLEFRMRHQDGSWIWVYDHGRVMERSADGAPIRVLGTH 724 Query: 517 NDITEQKKSLEGILCNA 533 DI+++K + NA Sbjct: 725 MDISKRKATELLANSNA 741 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 30/219 (13%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVR 425 ++ A+ L +IGF I ++ + IF+ + ++ D+VW ++ Sbjct: 282 VRLAVSAMLDEQGHIIGFIGIASDISERRNQENAIFTATSQLEASIEAIPDLVWMKNMKG 341 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEF 483 + + LG ++ G DR+ D + L E Sbjct: 342 EFLRCNRSFERFLGSDKPNIIGKTDYDFF-----DRELAELFRSHDKKATNQDFPLITEE 396 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC------------ 531 + D + + + + +G+++ +G+A+DITE+K + Sbjct: 397 WLTFNDGYYGLFEVTKTGIKDIDGNLIGTLGMAHDITERKNIELKLRRKREAMQALNEIS 456 Query: 532 -NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 A + +L L ++A + ++ Sbjct: 457 SQAIH---------TYYKQQLKEALAVAAKYLGMDIGIL 486 Score = 58.8 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 23/162 (14%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLA------VLGSGDIVWDWDIVRDRVTTTPDIATILG 439 V+ + A Q ++ E A + + D + +T +LG Sbjct: 154 VMHLLEAKISSKQLLWLSDEMSKRAAFKKALLACAADSIISTTPEGIILTFNQAAERLLG 213 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTI-----LDSFVGYRRGRLQYEFRV--------- 485 + G + H D R + + + R+ Sbjct: 214 YEQEELIG--LHTPAIFHDPDEIIARAADLSLEFNQTIAPGFEVFVSKARLGMADIHEWS 271 Query: 486 -RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + + + M + G I+ +IGIA+DI+E++ Sbjct: 272 YIHKNGTRVPVRLAVSAMLDEQGHIIGFIGIASDISERRNQE 313 >gi|316932316|ref|YP_004107298.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315600030|gb|ADU42565.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] Length = 903 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 147/624 (23%), Positives = 267/624 (42%), Gaps = 30/624 (4%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 I++ + R ++ +++ +++ + Q + + D Sbjct: 294 IVMITTTTIEDALASWRTQTRLMVSVAAVSALVVTVILLLIINQIGKHHRATQERLKLDK 353 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHIND-- 460 +R A+ + +D V + GL+S + +R+ L + Sbjct: 354 QRLDTAINNMSQGLLLFDAQARLVVCNRRYLDMYGLSSAIVKPGCSLRDVLEHRKATGSL 413 Query: 461 ---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 DN L + R ++ + + P+ ++ Sbjct: 414 YGNVDNITADLIDKLSSR--KVSEVHSILDRS-----IEFSSVPVPGG-----GWVITHE 461 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+TE+ + E I A D+LT +PNR F RL L ++ ++ IDID++K Sbjct: 462 DVTERTRYAEKISYLAHFDSLTDLPNRSMFRQRLENELQRASR--GAPFALLYIDIDEFK 519 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG VGD++L + R+ + ++ D +ARL G+ F II I+ + + + + Sbjct: 520 NINDTLGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIAVSGADDVTTLIERI 579 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +SI +P L ++ ASIG A +++KNA+LAMY AK G F Sbjct: 580 YESIRLPYQCLGHHLSTDASIGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFRFFEP 639 Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 R ++ DL AV + Y P++ L I G EAL++W HP G IS + Sbjct: 640 EMDAVAKARRQLEFDLRGAVGKRGFEIHYQPLVDLRSGAITGCEALLRWRHPSRGMISPA 699 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ IAE+ +I I + L + W I + +NI+ L + Sbjct: 700 EFIPIAEDTGLINEIGAWTLATACAEAAKWSA-----DITLAVNISPVQFRQPSLALLVA 754 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +++ + +R++L +E+V++ + + + L +LR +G+ ++LDDFGT S LSYL Sbjct: 755 SVLGASGLPANRLELEVTEAVLIHDDDAALSTLTQLRALGVRISLDDFGTGYSSLSYLQR 814 Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + + AI+++++ +A T A+ + E + L+ +GC Sbjct: 815 FPFDKIKIDRSFVDAIDTTDGSTAIVQAVVNIAAARHMTTTAEGVETERQREILSVLGCT 874 Query: 934 YIQDSHVASPLGFNSILKLLKERF 957 +Q + + + KLL Sbjct: 875 QMQGWLFSPAVPAPAFRKLLTSHL 898 >gi|148556869|ref|YP_001264451.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1] gi|148502059|gb|ABQ70313.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingomonas wittichii RW1] Length = 887 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 168/726 (23%), Positives = 309/726 (42%), Gaps = 39/726 (5%) Query: 260 ALSSSLIIFLFMYL----HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315 +++ L + L W + + G + P + L Sbjct: 65 IVAAGLWLLGRPALGGAGFWMIAAPLLAMLVAGGAIRLVARRGKGATAPERMHGFVAL-L 123 Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWI---LIFIWFIGLWMAITKRL---------- 362 + + + G + + A L+ + + T L Sbjct: 124 GLVQGFGWSVWLLASATGLAPSRWALAAVAHGGLLVVTTLVFAPVPTAALALWLCLAIAA 183 Query: 363 -----DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA-VLGSGD 416 ++ + V +V+L G + +V + + ++ + L SG Sbjct: 184 TVALGPWAVLALLVPLLAVAVVMLGGISERSYVASRRWLARAAVALKASLLLGEFEESGR 243 Query: 417 I-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-Y 474 W+ D +P IA LGLA+ + G L +H + +G + Sbjct: 244 GWFWETDDRGLISYISPQIAAALGLAADRLLGTPMTGL-VLHEAGDGAGSGAGERTLGFH 302 Query: 475 RRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 RL + E VRAA + W + RP + G+ L + G D+TE ++S + A Sbjct: 303 LATRLAFSEIAVRAAGDDVRWWSLSGRPAFDEYGNFLGFRGSGTDLTEMRRSEAEVKRLA 362 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D+LTG+PNR L L A R + ++D+D++K +ND LG VGD +L Sbjct: 363 SYDSLTGLPNRILMRRTLDESLRDIAGRPK-RAALFMLDLDRFKMVNDTLGHPVGDALLR 421 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + R+ +++ + RL G+ F ++L ++A A A+ + ++ P + ++ Sbjct: 422 QVAVRLQRVVQQDGQVGRLGGDEFNVVLPGIVERNRLATLASAIIQQLSQPYLIDGAHVS 481 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711 + ASIG A T+ +++NA+LA+Y AK G + DR +++ DL Sbjct: 482 IGASIGIAIAPDDGATADALVRNADLALYAAKADGKGVHRFYEPEMHASAKDRRLLEMDL 541 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 + S L+LVY P++ E IV EAL++WDHP G +S S+F+ +AEE+ +I I Sbjct: 542 RGVMSESGLHLVYQPVVDAGSEAIVCFEALVRWDHPTRGAVSPSDFIPVAEEIGLIPQIG 601 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 ++L + +W D P+ + +NI+ + L + + ++ P R++L Sbjct: 602 EWVLRTACLEAANWPD-----PVRVAVNISPIQFANPSLPGIVLSALAAAQLPPHRLELE 656 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +E V + + + + RL+ IG+ LDDFGT S L YL PF+ +K + S + G+ Sbjct: 657 ITEGVFLNDDAATDAMFARLKAIGVRFALDDFGTGYSSLGYLKKAPFNKIKIDQSFVRGA 716 Query: 892 T---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + AI+R+I+ +A+++E A+ ++ + +GC +IQ P+ + Sbjct: 717 AVPGNRNAAIIRAIVALAESLEMETTAEGAETPDELALIRSLGCSHIQGYIFGRPMLSDE 776 Query: 949 ILKLLK 954 + Sbjct: 777 ARARVA 782 >gi|89900801|ref|YP_523272.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89345538|gb|ABD69741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 874 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 141/593 (23%), Positives = 260/593 (43%), Gaps = 11/593 (1%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 + L+ L ++ + + + I + + + D + + + Sbjct: 268 NFFLSLLMAYLAWLLYEMRVRDQGLEVQVNERTAEILATQRQLQATLGAIPDPLLELGLD 327 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 L + + G R + + L + + + + Sbjct: 328 GRCYNAHSSRTDSLPWPTEDLIG--RTIMELLPPQACQIVLAALQEA-KEKECSIGKQIK 384 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 V + HW + + S G+ ++ + DITE K++ I A D+LTG+PNR Sbjct: 385 VPLDNG-MHWFEMSVTRKSALPGEEPLFLVLCRDITESKQAERKIQLLAHFDSLTGLPNR 443 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 DR L + + +++D+D +K +ND LG VGD+VL++L R+ ++ Sbjct: 444 VLLTDRCNLALSAAQRNGTPLAL-LLLDLDHFKNVNDSLGHRVGDEVLIALAGRLKGAVR 502 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D + RL G+ F ++L E N+ A A + +S + L E+TVT SIG A + Sbjct: 503 EQDTVCRLGGDEFILVLP-ETNAAGAAHIAEMLLQSALVAFELEPHELTVTPSIGIALFP 561 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722 + + A+ AMY AK G N+ F + ++ L A+E ++L L Sbjct: 562 GDGSDFDTLSRCADAAMYRAKKDGRNNYRFFTAEMQARSERTLTLENALRRALERNQLQL 621 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P I L +VG EAL++W HP+ G + +EF+ +AE +I I ++L + + Sbjct: 622 HYQPQISLASGRVVGAEALLRWSHPELGAVPPAEFIPVAETCGLILPIGEWVLRTSVQQL 681 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 +W D M PI + +N++S +L E + +++++ ++L +E+V M +P Sbjct: 682 KAWIDA-GMLPIALSVNLSSVQFRHADLPELVTSILNEAQLPAHLLELELTENVAMTDPL 740 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 + ++ L + G+ +++DDFGT S LSYL +K + S + AI+ Sbjct: 741 GAIAVMNNLHERGVRMSIDDFGTGYSSLSYLKKFRVYKIKIDQSFVRDITEDSDDKAIVG 800 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +II MA ++ IA+ + E ++ L GC +Q + + PL + Sbjct: 801 AIISMATSLGMQTIAEGVETEGQLEFLKAKGCTEVQGYYFSRPLPVEQFEAFM 853 >gi|110835552|ref|YP_694411.1| sensory box protein [Alcanivorax borkumensis SK2] gi|110648663|emb|CAL18139.1| sensory box protein [Alcanivorax borkumensis SK2] Length = 959 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 144/563 (25%), Positives = 277/563 (49%), Gaps = 12/563 (2%) Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 E+Q LA + + ++ D + I G + G Sbjct: 394 RQAQEQQRLAATVFENAPEGIFILDHKFRFLAVNTRFEQITGYTESLLIGRRILEEEGAQ 453 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 N R+ + I + + G + E R + + + +++ + + ++RY+G+ + Sbjct: 454 AN-REIYLEITAALLDN--GFWEGEINERRRNGEIYPEWLQMSAVRDEQKRVIRYVGMMS 510 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+T +K++ + + + D LTG+ NR F + L L L+ + + +++ID+D++K Sbjct: 511 DLTARKETEQQLQFLSNYDRLTGLANRTQFREHLHKSLTLARLNRQ-KVALLMIDLDRFK 569 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IN+ LG +GD +L + R+ + + LAR+ G+ F ++L + + I+ + Sbjct: 570 PINESLGHEIGDRLLKAAAERMAQHAGGQESLARVGGDEFTLLLENHGSEGSISQQCQQL 629 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++ P + E+ + ASIG + + + + M+ +++A+Y AK GGN+ + +R Sbjct: 630 INAMKKPFLIDGHELLLGASIGISIFPDTAKEAQSMINQSDMAVYQAKRSGGNNFQFYRS 689 Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + +++ ++ L A+ +E + Y P + L I +EAL++W HP G + + Sbjct: 690 NMRVASVEQLALETSLRKAIFKNEFVVHYQPKMNLASNRITSVEALVRWQHPTMGLLPPA 749 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AEE +I AI +LER R W+ Q I + +N+++ + E + Sbjct: 750 DFIPLAEETGLISAIGELVLERSCRQAHKWQKQGLGE-ICVSVNLSAHQFRKGNVAETID 808 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++S T SP ++L +ES++M + E++ LL +LR G+ L LDDFGT S LSYL Sbjct: 809 RVLSTTELSPHLLELELTESLIMEDMEQNIELLQQLRSRGVELALDDFGTGYSSLSYLKR 868 Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P DT+K + S + AI R+II MA +++ +IA+ + + L M CD Sbjct: 869 FPVDTLKIDRSFIMELDKNPDDAAITRAIIDMAHSLKMNVIAEGVETADHLSILRDMHCD 928 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ + +L+LL + Sbjct: 929 SIQGYLISRPVPESELLELLHTQ 951 Score = 121 bits (305), Expect = 4e-25, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 2/154 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + V + A G + + + ER LA+ S +WDW + T + +LG Sbjct: 253 LESMVQERTRALGETNTALAATSERLELALEASNIGLWDWMLDTGLNHHT-NFDRLLGYD 311 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 S + +H +D R + S R +R+R AD + W+ R Sbjct: 312 SAYFKNFFGDLDTLVHPDDLARIRQAMVSHFKGEDPRYHAVYRLRHADGSWRWIEDEGRV 371 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + +G +R IG DITE +++ E A Sbjct: 372 VSRSESGRAIRMIGTRRDITEDRQAQEQQRLAAT 405 >gi|260220639|emb|CBA28380.1| hypothetical protein Csp_A06980 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 774 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 164/752 (21%), Positives = 309/752 (41%), Gaps = 40/752 (5%) Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF----LFMYLHWN---RWH 279 +L I+ L S ELL+W A +L + + + Sbjct: 45 TMLANIASAGLILWTFSPDISWELLLWFAGILTVCLFALRSWRRSLGRQFTQASPGTIHK 104 Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339 A I G+ +F +IA + I L Sbjct: 105 ATWHAIVLGGVWAFIPVFWFPGASDSQQLTIATLLTGMIGAGGFVL---------NPLPL 155 Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 A++ +F + + + ALV +V L T + +A Sbjct: 156 ASVAYVTVFSASALAALWRSGNPAYSGV-AALVSVYAPLVTLAALTAWRKSMALINAESQ 214 Query: 400 IFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + S+ + +GD +W+ D V +P + +L ++ + G W+ Sbjct: 215 SQQQEQTISVLLSDFEQNAGDALWETDAAGRLVHISPKLCELLQVSEEKVSGN--TWMSI 272 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + D L + + + + ++ + + + + N G + G+ Sbjct: 273 LVPIDASGAV-TLSEALASGKPFKELQISFKSPSGN-RHIQLNGKALQNDEGAFSGWRGV 330 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D+TE+ +S + A D+LTG+ NR + LT + ++ ID+D+ Sbjct: 331 VSDVTEKVQSTNLLRQLAHTDSLTGLTNRFKLREFLTEKVA-----GKHPLALLSIDLDR 385 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND G +VGDDVL + +R+ + L ++ARL G+ F ++L+ + + Sbjct: 386 FKAINDRHGHSVGDDVLRLIAQRLRQQLGPQTMIARLGGDEFAVVLVEPGDIQQAPTLGR 445 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + P+++ R +TV S+G +T E++ A++A+Y AK G ++ Sbjct: 446 RVVHLLQEPLDISVRRLTVGGSVGLTISRGDVVTLDELMVQADIALYAAKDAGRGQCVAY 505 Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++ ++ L A+ EL L + P + L +IVG E L++W HP G IS Sbjct: 506 TPELGAVNQRRATLEYGLRKALHQQELQLYWQPKVDLKTWKIVGAETLMRWRHPVLGWIS 565 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ IAE+ MI A+ + L R S + + +N++S L D+ Sbjct: 566 PGEFIPIAEQSGMIAALGSWALLEACRMHSSALA-----GLKVSVNVSSMQLRDDSFLSV 620 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +Q + + +P +++L +ESV + + + + +L ++K G+ L +DDFGT S LSYL Sbjct: 621 LQDAMDEFQVNPGQLELELTESVFLESADHALAMLHAIKKTGVKLAMDDFGTGYSSLSYL 680 Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PFDT+K + + + E A++ I +A+ + + + + ++ + R G Sbjct: 681 RSFPFDTLKIDRAFVIELVEKKDAEAVVHMITGLAQTLGMRTVCEGVETPQQLEAIQRAG 740 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 CD +Q VA P+ + +E + K T Sbjct: 741 CDEVQGYIVAKPMPLQEFVVF-RENWDKTKPT 771 >gi|86747177|ref|YP_483673.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86570205|gb|ABD04762.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 742 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 142/580 (24%), Positives = 244/580 (42%), Gaps = 36/580 (6%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + L G+ + + V G + G Sbjct: 180 ELKQREASFRLMFEGNPVPMIVCSLKDERIVAVNDAAVLHYGYSPAEFAGLTI------- 232 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512 + + + + E R AD + + R ++ NG+ Sbjct: 233 -----RRLQAFGTELPWSGEQTNEERAARTWTHVKADGSLIDLAVYARQLT-YNGEPAVL 286 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + DITE+K++ + A D LT +PNR RL +L + + + V+ I Sbjct: 287 LALM-DITERKRAEMRLAFMAHHDGLTKLPNRSLLRKRLDELLAKTRRTGD-KIAVLFIG 344 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K +ND LG A+GD +L + RR+ L+ D LARL+ + F +I + Sbjct: 345 VDHFKAVNDTLGHAIGDKLLRGIARRLRSTLREEDPLARLNSDEFAVIQTGIKRPEDVTL 404 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGN 690 A + +IA P L + ASIG A S ++L NA +A+ AK RG Sbjct: 405 LAKRLLNAIAEPYLLEGHSVVAGASIGIAVAPLDGDDSEKLLMNAGMALSRAKTDSRGSF 464 Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + R I+ +L A+ + L Y P+I L + G EAL++W HP+ G Sbjct: 465 SFFEPDMDARAQSRRKIETELRAALRHEVLRPYYQPLIALSGGGVTGCEALVRWPHPERG 524 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 +S EF+ +AE+ +I AI +L RD W I + +N++ L Sbjct: 525 MVSPGEFIPVAEDTGLINAIGAQVLRAACRDAARWP-----GDISVAVNLSPLQFRVGNL 579 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ P R++L +E++++ + L LR +G+ +++DDFGT S L Sbjct: 580 MATVMDALKQSGLPPRRLELEITETLLLEKSSQVIATLHALRALGVRISMDDFGTGYSSL 639 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL PFD +K + S + G ++ R AI+R+II + + TI A+ + E ++ L Sbjct: 640 SYLRSFPFDKIKIDQSFVRGVSDNREAQAIVRAIISLGMGLGVTITAEGVETEAELNWLR 699 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER------FPLVKN 962 GC Q + + + LL + FP+ + Sbjct: 700 AEGCHEAQGFLFSPARPNDELRDLLDRQGTAGGAFPVSAS 739 Score = 42.2 bits (98), Expect = 0.47, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 40/155 (25%), Gaps = 13/155 (8%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V A ER A+ + D + A I ++ Sbjct: 44 AAVADRERAVAVALDEARKSHERLREAIDILPQGIVFLDSEGRYILWNKRYAEIYKASAD 103 Query: 444 SMHGPIR---NWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMII 497 R + D + ++ R RL + AD + + Sbjct: 104 LFKPGARIEDTMRVGVARGDYPEAVGHEEEWIAERMRRLFDPGHSHEQVLADGRCIRIEE 163 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R S+G IG+ DITE K+ Sbjct: 164 RTT----SDG---GVIGLRVDITELKQREASFRLM 191 >gi|328543003|ref|YP_004303112.1| diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with PAS sensor, signal transduction histidine kinase and methyl-accepting chemotaxis domains; membrane-associated protein [polymorphum gilvum SL003B-26A1] gi|326412749|gb|ADZ69812.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with PAS sensor, signal transduction histidine kinase and methyl-accepting chemotaxis domains; putative membrane-associated protein [Polymorphum gilvum SL003B-26A1] Length = 980 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 149/664 (22%), Positives = 271/664 (40%), Gaps = 39/664 (5%) Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366 + + L I+ G++ LL I + Sbjct: 332 ATFAIHLLAGAASLTCAIAIVVFGIRVVRPIELLTAHIRRIQVSERHDVPIPAGLCARRD 391 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 L + + + + + + ER S A+ + D R Sbjct: 392 EIGVLASSFAAMTRSLEEARQRLLQESRA---EVRQQFERLSSAIESIPQGILLTDASRK 448 Query: 427 RVTTTPDIATILGLASG-SMHGPI---------RNWLPYIHINDRDNFRTILDSFVGYRR 476 + + + GL G + G +N + D+ L+ F+ ++ Sbjct: 449 VILCNENFRKLYGLDDGREIVGQPVADVIRACLKNGASVLDEPDQSKLLR-LNYFLDGQK 507 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + + ++ G + + DITE+++ E I A D Sbjct: 508 A--------LDLNGERTVVVTAG---VTPEG---GTVSVHEDITERRRQEERIAHLAHHD 553 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LTG+ NR F + L L ID+D++K +ND LG GD +LV + Sbjct: 554 ALTGLANRVLFREEACEALLRRRKARRLALL--YIDLDQFKAVNDTLGHPTGDRLLVEVA 611 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 +R+ + D +ARL G+ F I+L + + A + ++I +P + I V A Sbjct: 612 KRLRAAVGRHDHVARLGGDEFAIMLAGNPRAEDASAAADRLIETIRIPYEVDGNFIVVGA 671 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLA 714 S+G A + ++K+A++A+Y AK G N F + ++ DL A Sbjct: 672 SVGIAMAPDDGTDADVLMKHADMALYRAKQDGRNTYCFFESDMDARMQARRELELDLRKA 731 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 +E E L Y P+ + E+VG EAL++W HP GN+S ++F+ IAEE +I I ++ Sbjct: 732 LEGGEFALHYQPLFDIGSHEVVGFEALLRWTHPVRGNVSPADFIPIAEETGLIGEIGSWV 791 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 ++ R+ +W + + +NI+ L + A ++ + PSR+++ +E Sbjct: 792 VKEACREAATWPK-----DVRVAVNISPVQFRTRTLMLDIMAALASSGLLPSRLEIEITE 846 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894 V++ + + + +L LR++GI + +DDFGT S LSYL FD VK + S + E Sbjct: 847 GVLLQDTDATLGVLEDLRRLGIRIAMDDFGTGYSSLSYLRKFNFDKVKIDRSFIQDIGED 906 Query: 895 --RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 A++R++ + ++ T A+ + E ++ L GC Q P+ ++L Sbjct: 907 AESRAVIRAVTSLCLSLGITTTAEGVETEDQLRALKAEGCTQAQGFLTGRPMPAADAVRL 966 Query: 953 LKER 956 L+ R Sbjct: 967 LQGR 970 >gi|254490929|ref|ZP_05104111.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxidans DMS010] gi|224463838|gb|EEF80105.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxydans DMS010] Length = 1084 Score = 502 bits (1294), Expect = e-139, Method: Composition-based stats. Identities = 132/536 (24%), Positives = 246/536 (45%), Gaps = 9/536 (1%) Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 R V + G + G L Q E Sbjct: 550 DRQFVRVNEKFEELFGYTRDDIEGQSVQCLYLNEDAYLQFGEEAYHQLTSGDNYEAQLE- 608 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 + D Q W I + + ++ I + DIT Q+++ E + A D LTG+PN Sbjct: 609 -MVRKDGQVFWCGISGKAI-DAGSPKAGTIWLFEDITIQRQNEEHLTRLASIDGLTGLPN 666 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R F DR+ + S + R V +D+D +K IND LG GD +L + RI + Sbjct: 667 RAVFTDRVEHAIHKSMRNSG-RLAVFFLDLDHFKHINDSLGHKAGDILLTEVAGRIKACV 725 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 + D +ARL G+ F ++L ++ + A + KS+ P + E+ ++ SIG + + Sbjct: 726 REGDTVARLGGDEFTLLLEDVRSAEYVGKVAEKVIKSMTQPYQIENTEVNISPSIGISLY 785 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELY 721 + +++NA+ AMYHAK G N+ + + +++ + R+ ++ L VE +L+ Sbjct: 786 PADGRDVDMLVRNADAAMYHAKKVGRNNFQFYSAEMNAEAAKRLAMETALRRVVEQQDLH 845 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L Y P + L ++VG E L++W +WGN+S +EF+ + E+ MI + ++L + Sbjct: 846 LHYQPQVNLQTGKLVGAEVLLRWQSEQWGNVSPAEFVPMLEDTGMITQVGEWILRQACAT 905 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 + W ++ + +N++ + L ++ L+ +T + ++L +ES++M + Sbjct: 906 YLEWSERLPD-NFMMAVNLSGRQFKGGSLAAFIRRLLDETGMPAAHLELEITESMLMDDT 964 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899 E + + L L + ISL +DDFGT S LSYL P + +K + S + S + AI+ Sbjct: 965 ELATITLAELSAMNISLAIDDFGTGYSSLSYLKQFPLNVLKIDSSFVRDVTSDKDDAAIV 1024 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +I+ M+ ++ ++A+ + + L R C Q + + + L+ + Sbjct: 1025 DAIMAMSNSLGLKVVAEGVETAEQRQYLLRHDCRLAQGFLFSKAVDKDKFSTLIDQ 1080 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 51/144 (35%), Gaps = 9/144 (6%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q + + + + + + G + + D+ T P I ++ G Sbjct: 395 QLITELAQAKESLENREQHILAILNGVPEAILTLDVNGKIEQTNPAAERIFHATENALVG 454 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + + H +F I++ + EF + D M++ + + + G Sbjct: 455 ENIS-RFFAHSETVTSFNDIIEQAAEGK------EFDGQRYDGSDVSMVLSLSQIRAAKG 507 Query: 508 DILRYIGIANDITEQKKSLEGILC 531 ++ ++ + DI+ +K++ + Sbjct: 508 EV--WVCVITDISTRKRTELQLQQ 529 >gi|229156115|ref|ZP_04284214.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] gi|228627436|gb|EEK84164.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] Length = 785 Score = 502 bits (1294), Expect = e-139, Method: Composition-based stats. Identities = 161/754 (21%), Positives = 304/754 (40%), Gaps = 20/754 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ + + ++ + + G + S+ Sbjct: 38 ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + H + + + + ++ P +S + + +I Sbjct: 94 YLYFYLQDDLSHRSLILLRCLYRVFLLFI-AIAATIPRSASSRRNYFIINPTFGKKLLVI 152 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + L L + + Sbjct: 153 FPYLAVAILIGFTLKEQTASSTLITGNCIAFVFVLIRHTIVRMQNKDLTETLKVFNNQLE 212 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 TV Q S + + ER D + D + + +LG S Sbjct: 213 QTVSQRTRDLINKSNDLIKNQERFKSLYEYHPDPILTIDSNGIVLNINQSGSMLLGKESA 272 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G D+ + + LQ + + W + I P+ Sbjct: 273 ALIG--EECFSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 329 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G + DIT+ K+ E I AF D +T I NR F L + + + Sbjct: 330 -IEGQAFGSYVMVKDITKMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTKD 388 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F II+ + Sbjct: 389 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPSLPLARIGGDEFAIIVHN 447 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 448 RTEKQ-LLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 506 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++G EAL Sbjct: 507 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKVGKVIGAEAL 566 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G IS EF+ IAEE I +I + L++ R + W + + IN++ Sbjct: 567 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQKACRQLKEWHSA-GFSNLKMGINLS 625 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + + + I + + I L +E + M + + + L L+ G+ L++D Sbjct: 626 AIEFEQKDFVKIIISTIGEIGVPANSIDLELTERIAMVDEKETLAKLKALKSYGVHLSID 685 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P DT+K + G + I+++II +A + +IA+ + Sbjct: 686 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGISTDGDEIIQTIISLAHTLNMKVIAEGVE 745 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L R C IQ + + P+ + + L Sbjct: 746 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFINFL 779 >gi|188582142|ref|YP_001925587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] gi|179345640|gb|ACB81052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] Length = 950 Score = 502 bits (1294), Expect = e-139, Method: Composition-based stats. Identities = 138/567 (24%), Positives = 257/567 (45%), Gaps = 23/567 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454 + + A+ + +D + +LGL +G + +R Sbjct: 391 EDQLKRSNSQLDAALSNMLQGLCLYDAAGGLLVYNRRFCDMLGLDAGELRTGMSLREVAR 450 Query: 455 YIH--INDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + ND F +++ + +R +R D I+ ++ + G Sbjct: 451 LVETTSNDGSAFGLLMEQQALLHRGVSGSLCCPIR-KD-----CIVSLKQQPTAEG---G 501 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 +I D+T++ ++ I+ A +D LTG+ NR F +RL + + Sbjct: 502 WIATYEDVTQRYEAEARIITMARRDALTGLANRMVFGERLEEAAARLEDGSGAGFATLCL 561 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K++ND LG VGD +L S+ R+ L+ D++ARL G+ F I+ + + Sbjct: 562 DLDRFKEVNDTLGHPVGDGLLRSVAERLQSCLRETDLVARLGGDEFAIVQAGTHARQDAS 621 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + + P L +TV SIG + + ++LK+A+LA+Y AK G Sbjct: 622 ALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATGRGC 681 Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F R ++ DL AV N E LV+ PI++L + I EAL++W HP+ Sbjct: 682 WSFFEEEMDLELRKRRAMESDLRTAVGNGEFELVFQPIVKLDRQRIATCEALLRWRHPER 741 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S +EF+ +AEE I I ++L + + W I + +N+++ + Sbjct: 742 GYVSPAEFIPLAEETGSICEIGEWVLRKACSEAAKWP-----GGIGVAVNVSAVQFKNAA 796 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + ++ + R++L +ESV++ + + L L+++G+ + +DDFGT S Sbjct: 797 VVRAVMEALTASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGTGFSS 856 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL PFD +K + S + E I+RS++ + +++ T A+ I E +++L Sbjct: 857 LSYLQSFPFDKIKIDQSFVRNLGETGNARLIVRSVVGLGRSLGITTTAEGIETEAQLEQL 916 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954 GC+ Q + P+ +I +L+ Sbjct: 917 RLEGCEEGQGYLFSRPVPSATIRELVS 943 >gi|167622481|ref|YP_001672775.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis HAW-EB4] gi|167352503|gb|ABZ75116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella halifaxensis HAW-EB4] Length = 694 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 141/567 (24%), Positives = 265/567 (46%), Gaps = 35/567 (6%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + D + S + + ++ D + P A +LG + H + Sbjct: 124 LKDDLQLLSAILDSTAVAIYAVDNKGLCIFANPQCALLLGYS---------------HPS 168 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRA-----------ADNQFHWMIIRIRPMSNSNGD 508 ++ + V R E ++ AD + +P++ N Sbjct: 169 --QLLKSNMQQLVNQRAESPNTESSIQDLENIKEDIFWKADGSSFPVEYNSQPLT-LNSH 225 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + D +E++++ E I A D LT +PNR L RL +++ S + V Sbjct: 226 VNGAVISFYDNSERREAEELIRRQAHYDTLTDLPNRFLALKRLEQLVESSERSGKM-LAV 284 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D +KKIND LG GD +L++ + R+ + + D + RL G+ F I+L +++ Sbjct: 285 IFLDLDDFKKINDSLGHEAGDLLLITASERLLKTTRAEDTVGRLGGDEFIILLDGLSSAN 344 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A + P + R++ +TASIG A + + T SE+L+NA+ AMYH K G Sbjct: 345 DAQPIAENLIGGFRKPFYIDNRQLILTASIGIAIYPNDGETPSELLRNADSAMYHTKSIG 404 Query: 689 GNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N F + + + +E + A+E E+ + Y + + D I+G EAL++W++ Sbjct: 405 RNTYSYFTHAMNKEVSRRLAIEEQIHGALERGEIRVHYQIQLDIRDGSIMGAEALLRWNN 464 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P G++S +EF+ IAE+ MI+ + F+L++ W+ + N + IN++ + Sbjct: 465 PTLGSVSPAEFIPIAEQTGMIEPMGEFVLQQALETAHIWQRKFND-KFRVAINLSPRQFR 523 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 + +L + + + K PS ++L +E V++ + L +L + G +++DDFGT Sbjct: 524 NPKLVQTIIDKVEKLGMHPSDLELEITEGVLLSGHAYTLGALMQLSEAGFYISMDDFGTG 583 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL PF +K + S + + + ++ + I MA + +IA+ + + + Sbjct: 584 YSSLSYLKTYPFTILKIDRSFIHDMNKDDKSNDLIIATIEMAHALGIRVIAEGVETQEQL 643 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951 EL+ M CDY Q ++ P+ +LK Sbjct: 644 DELSFMMCDYAQGFLISKPVPLKELLK 670 >gi|90021869|ref|YP_527696.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] gi|89951469|gb|ABD81484.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] Length = 820 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 133/592 (22%), Positives = 259/592 (43%), Gaps = 13/592 (2%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 LV + V + + E + V + + + Sbjct: 218 LVASTNQLLDAVDLALAKRRAVEVVLRKSEEHVRQIIDSLPVWVGARNKDGHYIFANQAL 277 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 A L +M G + + D + + R +E + D + Sbjct: 278 ADFLHTKPDAMRGSHISDFAEFFVTDPQQIIDLDAEVIKSRISAQIWEEKWITNDGEERD 337 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 M + PM + + + +DITE K++ + A+ D LT +PNR ++RL Sbjct: 338 MHTHVMPMEFYDEVVSLVVS--SDITELKRTQAQMEHMAYHDALTDLPNRSYLVERLEEE 395 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + + ++ ID+D++K IND LG GD VL + +R+ + K D++ RL G Sbjct: 396 VRKAN-HGQYYGALLFIDLDQFKYINDSLGHPAGDGVLKHVAQRLTAVTKENDLVVRLGG 454 Query: 615 NRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 + F ++L + + L + D +R+ I+ P + ++ VT S+G + Sbjct: 455 DEFVVVLTNLGDELPTSILRAEDIGERLRRYISEPHFYNDLQLHVTCSVGIVMYPEEDAG 514 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 E+L+ A+ AMY K +G + ++ F ++ + ++++ DL A+E L Y P Sbjct: 515 VHELLRYADTAMYQVKEQGRDAIQFFNKYMADKARNVLVMEGDLHKALEQHRFSLYYQPR 574 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + + +IVG EAL++W+HP G IS +EF+ I E +I + ++LE R + W++ Sbjct: 575 VDVTTSQIVGAEALLRWEHPDRGMISPAEFIPILETSGLIVEVGRWVLEDSIRQVKIWQE 634 Query: 788 QAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 Q + + +NI+ + +E + ++ + +PS I++ +E +V+ N E + Sbjct: 635 QGIWKDDMRLGVNISPRQFRSSEFVNDVTKILQEVGINPSLIEMEITEGIVIHNLEETVA 694 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 + L ++GI+ LDDFGT S +SYL +P +K + S + ++ +I Sbjct: 695 TMSSLCELGINFALDDFGTGYSSISYLKQLPVAILKVDQSFVRDITFDRNDRVLVETISA 754 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 M + ++A+ + + + C Y Q + P+ ++ +LL + Sbjct: 755 MGNMLGLDVVAEGVETCDQLHLVREYNCKYYQGYLCSPPVNADAFAELLTTK 806 >gi|171059398|ref|YP_001791747.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170776843|gb|ACB34982.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] Length = 720 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 146/597 (24%), Positives = 281/597 (47%), Gaps = 28/597 (4%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + ++H+L T + + + A + ++W + P+ +LG Sbjct: 120 LLAGRLRHLLRTARIQLELLRSRSKLARAQDLARMGSFEWRGDSAGLMLEPEALRVLGHG 179 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G R + N+R + L V + L + V D++ + I P Sbjct: 180 PHDHLGLRRLLRSLV-ANERAGVCSRLREVVRHSTV-LDTDVNVVMPDHRQRIIHIEAEP 237 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N +G+++ Y GI D+T+++ + I A D LTG+PNR+ + R L+ + Sbjct: 238 EFNEHGNVVGYAGILQDVTDRRLIEDKIRHLANFDALTGLPNRRQLIWRAERALEHARRL 297 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI------------- 608 + +++ID+D++K IND LG VGD++L+ + RR+ ++ D Sbjct: 298 GH-PCALLLIDLDRFKVINDTLGHGVGDELLMEIGRRLRSCVRHSDQLADMSIDATLLRS 356 Query: 609 ------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 +ARL G+ F +L + + + A + +++ P+ L E VTAS+G A Sbjct: 357 HRSLEAVARLGGDEFVTLLPEVADEPEALETAQRILEAMRAPVVLGGAEYFVTASVGLAM 416 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720 + I+ ++L+NA++AMY K G N+V+ F+ +++ ++ L A+E EL Sbjct: 417 FPRDGISVVDLLRNADMAMYAVKDSGRNNVKVFQPQMSGKGREKLELESALHKALERGEL 476 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P + + +VG+EAL++W H + +F+ +AEE +I I+ + + R Sbjct: 477 VLHYQPKVDVARGRLVGVEALMRW-HRNGELVPPGDFIPLAEETGLILPISEWAMREATR 535 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 I SWRD A + + +N+ S+ + + + + S ++L +E+ +M Sbjct: 536 QIRSWRDSAG-LDLKVAVNLPSRSFERGNVLDHIHEAAAAHDVPLSSLELEITETSLMKG 594 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAI 898 + +L RL + G+ +++DDFGT S LSYL +P +K + S + A+ Sbjct: 595 LDEVMPMLHRLTQHGVGISIDDFGTGYSSLSYLTQLPISELKIDRSFVQRLDRTGGSSAV 654 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +II +A +++ ++A+ + E L R+GC +Q + PL + +++ + E Sbjct: 655 VTAIIALAHSLKLKLVAEGVENEYQRDVLLRLGCHTMQGFLFSQPLPPDEVVRWVTE 711 >gi|302188295|ref|ZP_07264968.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 730 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 153/584 (26%), Positives = 271/584 (46%), Gaps = 26/584 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 154 AQIALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFTRLTGFSAEEVLGRTAHEVG 213 Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W + R++ L + E R + I + ++ +N Sbjct: 214 IWTDTLQ---REHMLEELR----QKGRVHHREMDGRDKHGAPLVLDISVEFITLNN--TA 264 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + A DI K + I A+ D LTG+PNR LDRL+ + L NLR ++ Sbjct: 265 CLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQ-HQNLRGALLF 323 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK- 629 +D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ S Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDQ 383 Query: 630 ----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + A +R +A P+ L + VT SIG +T +++LK A++A+Y AK Sbjct: 384 VTRQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAK 443 Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + F VS + S R+ ++ DL LA+ +E +L + + +E I G EAL++ Sbjct: 444 DCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLR 503 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801 W HP++G ++ +F+ I EE MI + +L + Q +P + +NI+ Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACKIGGLLLRQGLIPENKFLMGVNIS 563 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L ++ E ++ ++ S +KL +E +V+ N + + L + L+ +G+S +D Sbjct: 564 PRQFLQHDFIERVERSLTLNQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMD 623 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P DT+K + S + + I+R+I+ MA+++ +IA+ + Sbjct: 624 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVE 683 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + L R+GC Q + PL LL+ + P + Sbjct: 684 TSEQLAFLERVGCYTYQGYLFSEPLPGPQFESLLELKRPAQQTA 727 Score = 90.8 bits (224), Expect = 1e-15, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 8/162 (4%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 L + + +R LA+ + WD DIVR+R+ + A + GL + + Sbjct: 16 SASARLPLTDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQASARAALLHGLPALPV 75 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + + +R R I + + LQ +R + + + R R N Sbjct: 76 DESGGQFFGSLPGEERRRMRAIYAVALETGQDCLQVTYRFKLKNGASRLLEGRARIYRNE 135 Query: 506 NGDILRYIGIANDITEQK-----KSLEGILCNAFQ---DNLT 539 G +R G DIT+Q ++ E AF D++T Sbjct: 136 QGQPVRLSGTLMDITQQCAQIALEASEEKFAKAFHSSPDSIT 177 >gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] Length = 1500 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 130/433 (30%), Positives = 228/433 (52%), Gaps = 5/433 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + I A+ D LT +PNR F +L +++ S + V+ +D+D++K +ND L Sbjct: 1046 RAEKDIHQLAYHDVLTNLPNRTLFHKQLGGVINRSHLRGE-KFAVLFLDLDRFKLVNDTL 1104 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L + RI L+ D++ARL G+ F +IL + A+ A + ++ Sbjct: 1105 GHEVGDLLLKAAADRIVGCLRSKDMVARLGGDEFTVILEQIESPRIAAEVAAKICSVLSK 1164 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702 P +E+ + SIG + + +S ++K+A+ AM+ AK +G ++ R + + Sbjct: 1165 PFVFSGQEMYIGTSIGISLYPDDGEDASMLIKHADTAMFRAKEQGNSYQFYERGMETAAV 1224 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 R+ ++ +L A+E +E L Y P I L EI LEALI+WDHP+ G I SEF+ +AE Sbjct: 1225 KRLGLEAELRRALEKNEFTLYYQPQIDLGTGEITTLEALIRWDHPEHGLIPPSEFIPLAE 1284 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I +I +++L + SW + P I +N++ ++L EL + + ++ +T Sbjct: 1285 ETGLIASIGVWVLREACTQMRSWLQREFG-PFRIAVNVSGRELEREELIDKIVTILKETD 1343 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P ++L +ESVVM RLR++GI L +DDFGT S L+YL P D +K Sbjct: 1344 VPPKWLELEITESVVMKRASAVIPKFHRLREMGIKLAIDDFGTGYSSLNYLKSFPVDILK 1403 Query: 883 FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + AI++ II +A ++ ++A+ + + + L CD +Q ++ Sbjct: 1404 IDRCFIHDVVNNPDDAAIIKGIIALAHSLRLKVVAEGVESQAQEEFLKEHQCDRLQGFYL 1463 Query: 941 ASPLGFNSILKLL 953 + PL I + L Sbjct: 1464 SEPLSAAEIEQAL 1476 >gi|288960789|ref|YP_003451129.1| GGDEF domain-containing protein [Azospirillum sp. B510] gi|288913097|dbj|BAI74585.1| GGDEF domain-containing protein [Azospirillum sp. B510] Length = 875 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 161/678 (23%), Positives = 295/678 (43%), Gaps = 21/678 (3%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 + + + ++++ + L + Sbjct: 202 LTAATLDDIEALQRLMAVGGGMIAVLVLGLAGAAVWFTRSRIVGPLGRLVEDARRLARRD 261 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF-------SQGIFSDGER 406 L + G + L+G ++ +A S+ + R Sbjct: 262 LDRPFQGWSKGRGAGASFAGFRQDELGLLGRSLEDSRVALRGLFAAIEEKSRRLGESERR 321 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 ++A + D +WDWD+ + +P + +L L + + L +IH +DR + Sbjct: 322 YAMAAAATNDGLWDWDLDSGELYLSPRLRQMLHLPADGGEPGLAALLAHIHSDDRHAVLS 381 Query: 467 ILDS-FVGYRRGRLQYEFRVRAADN----QFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + EFRV D W+ + ++ G + R G A DI++ Sbjct: 382 AIRQGERSVDGASFDVEFRVLPPDRMREEHVGWVHLHGIVAADPGGRVARLAGSAADISD 441 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K ++ A D LTG+PNR + L +S + +D+D +K +ND Sbjct: 442 RKSYEARLVHQATHDFLTGLPNRAFLVRWLHDRQAVSDGGQGDLAL-LFLDLDGFKVVND 500 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG AVGD +L++ R+ L+ + +ARL G+ F +++ A A+ + Sbjct: 501 SLGHAVGDRILIATAERVAAALEPGEFVARLGGDEFVVVVP--AGREVAIARARALESAF 558 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 P+ E+ V SIG A + +L++A++A+Y AK G F S Sbjct: 559 QRPLGAGGTELRVGLSIGLAVDDGTSDDPEGLLRDADIALYRAKEHGKGRTVLFDASLRE 618 Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + + ++ DL ++E +++LVY PI+ L D + G EAL++W HP G +S ++F+ Sbjct: 619 AILIRSRLQRDLTPSLEAGDIFLVYQPIVALSDGRLTGFEALVRWRHPDLGLVSPAQFIP 678 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAEE I + +LER + WR A + + +N++++ + D + M ++ Sbjct: 679 IAEETGQILPLGRHVLERAVAQLARWRGMAGGGALTVNVNLSARQMWDERYVDDMLDFLA 738 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +K+ +ES+ + + +++R +L R +GI+L +DDFGT S LS+L +PFD Sbjct: 739 DGR--ADGLKIEVTESMTVTDHDQARAILERFHALGIALCMDDFGTGYSSLSHLSRLPFD 796 Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S ++ GS ++ ++LR I+ +A I ++A+ I E + +TR+GCDY Q Sbjct: 797 VMKIDKSFISALGSDPRQESLLRGIVDLAHRIGLEVVAEGIETEEERAVVTRIGCDYAQG 856 Query: 938 SHVASPLGFNSILKLLKE 955 A PL LL Sbjct: 857 YLFARPLSVADAEALLTA 874 >gi|229119018|ref|ZP_04248360.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] gi|228664409|gb|EEL19908.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] Length = 800 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 165/759 (21%), Positives = 311/759 (40%), Gaps = 30/759 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 53 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 108 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 109 YLYFYLQDDLSERTVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 168 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 169 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 222 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 223 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGTVLNINQAGSMLL 282 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 283 GKDSAALIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 339 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G I + DIT K+ + I AF D +T I NR F L + + Sbjct: 340 IVPIM-IEGQIFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 398 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 399 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 457 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I + +L++A+ Sbjct: 458 IIVHNQT-EQQLLDLCKTLFRITEEPFIVNQHSFYLSLSIGIAVYPFGGINITTLLQHAD 516 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 517 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 576 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 577 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHS-TGFSNLKM 635 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + M + I + + I L +E + M + + + L L+ G+ Sbjct: 636 GINLSAIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMIDEKETLSKLKALKSYGV 695 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 696 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 755 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+ + + + L R C IQ + + P+ + + L Sbjct: 756 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFL 794 >gi|323526658|ref|YP_004228811.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001] gi|323383660|gb|ADX55751.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia sp. CCGE1001] Length = 774 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 140/625 (22%), Positives = 270/625 (43%), Gaps = 29/625 (4%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + A+ R L I +G V Q +A Q + + E Sbjct: 158 AGVMLGAFAVYYREPRRPTPQEET-MLRDISRSVGLAVHQDAMA-----QRLANSEEHHR 211 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHI-------ND 460 L V + + + P +L + IR + H ++ Sbjct: 212 LVVDHLIEGIVVQSREGVVLACNPSAQRMLRTGPQIVGRSIRTVMVRGFHENGSPVTEDE 271 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDI 519 R + + + L + + W+ + P+ + DI Sbjct: 272 RPT-----NQVLATGKPMLGVTLAIELVSGEVIWITENVVPILKPGQSKPDSVLISFTDI 326 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN---LRPTVMVIDIDKY 576 +++ + A +D+LTG+ NR +R+ ++ D V+ +D+D + Sbjct: 327 GPVREAQRQLKFLATRDSLTGLYNRAYLTERMNSLFAPGGPDGTGELASVAVLFVDLDGF 386 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 KK+ND G GD +L S+ R+ + D LAR+ G+ F I++ + + S ++ A Sbjct: 387 KKVNDTAGHEAGDALLKSVAGRLAGCVGPDDTLARVGGDEFVIVVSACDCSERLIALARH 446 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + IA+P + + E + ASIG + + + +++NA+ AMYHAK RG N+ + F Sbjct: 447 ILDEIAVPFAVADNEYYLGASIGISRFPDDGQDAPTLMRNADSAMYHAKQRGRNNFQFFT 506 Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + I++ L A+ +EL LVY PI+ D +G EAL++W + + GN+S Sbjct: 507 AELNQQLQRRFLIEQSLRRALAGNELSLVYQPIVDSQDGRTIGAEALLRWYNSELGNVSP 566 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +EF+ +AE+ +I I ++L WR P + + +N++ + + L E + Sbjct: 567 AEFIPVAEDAGLIAEIGEWVLAHACEQAAHWRRTLA-PELIVAVNLSPRQF-NEGLVERI 624 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + + ++ P+ ++L +E ++M + + +L L G+ +++DDFGT S LSYL Sbjct: 625 RRCLDQSGLEPAALELEITERLLMSDSDTVLPMLLALSATGVRISVDDFGTGYSSLSYLK 684 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P +K + S + G IAI ++++ MA ++ + A+ + L + C Sbjct: 685 RFPLHNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETPEQAAFLRSIDC 744 Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957 D Q + P+G ++ + L + + Sbjct: 745 DKQQGYLYSRPVGASAYARALADAY 769 >gi|153873128|ref|ZP_02001812.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS] gi|152070406|gb|EDN68188.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS] Length = 565 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 141/542 (26%), Positives = 249/542 (45%), Gaps = 46/542 (8%) Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 Y+H F T L++ + +E++ D + W+ +R + ++NG I Y G Sbjct: 22 YVHPEQYQTFLTQLETDSKVQ----DFEYQAYCRDRRIVWVKETVRAVRDNNGQISYYEG 77 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR--------- 565 + DIT++K + E + +A D LTG+ NR +F D LT L + Sbjct: 78 MLEDITQRKLTEEKLRYDATHDQLTGLFNRTAFTDELTKTLIRLKAEWKTENGYQDSESD 137 Query: 566 ----------------------------PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 + ID+D++K +ND +G VGD++L + Sbjct: 138 VERENEKEVETDNETASFPLSPFSFPRYFAALFIDLDRFKIVNDSMGHLVGDELLTEIAS 197 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ + + DI+ARL G+ F +I + + +++ ++ P L + TAS Sbjct: 198 RLDKEMTENDIVARLGGDEFALIFKHIPDLAGLEQRTHQIQQQLSQPYFLKDETFKTTAS 257 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAV 715 IG A T+ E+L++A+ AMY AK +GG F+ + + + + ++ DL A+ Sbjct: 258 IGIALSKPEYETADEVLRDADTAMYEAKRQGGGKFVIFQPGMHTRVVNLLRMERDLRQAI 317 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E + L Y PII + +GLEAL++W HP+ G I F+ +AEE +IK + L++ Sbjct: 318 EQQQFCLYYQPIIESATGKTIGLEALVRWIHPEQGLIPPDLFIPLAEETGLIKELGLWVF 377 Query: 776 ERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 E + W+ Q + + + IN++ L + ++ KT ++ +E Sbjct: 378 ETACFQLRQWQTQFIHHADLGMNINVSPIQLKQPNFVHLVSDILEKTGIKSDTCRVEITE 437 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893 + ++ NPE + +L L+K+G+ L +DDFGT S LSYL P D +K + S + Sbjct: 438 NAMIQNPEGAMAILHDLKKLGVLLYIDDFGTGYSSLSYLQQFPIDALKIDKSFIQKIDAS 497 Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 K I +II + + ++A+ + I L C ++Q + + P SI + Sbjct: 498 VKSAQIAHAIIALGEAFGLKVVAEGVENNFHIAMLKATHCHHLQGYYFSRPKDAQSIEEF 557 Query: 953 LK 954 L Sbjct: 558 LS 559 >gi|71278443|ref|YP_267424.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71144183|gb|AAZ24656.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 788 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 155/716 (21%), Positives = 292/716 (40%), Gaps = 37/716 (5%) Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT---ASIARITLASIVLYYTYFIIY 328 + + + F + + M + + + + F I Sbjct: 68 FFDTRWVLISLCGLFFGLVPTLIAGAMMVSLRLHIGGAGILVGSLCVIIPGSIGCLFAII 127 Query: 329 HGMK-----GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 K ++ + I + + + + ++ +IQP +V V +++ Sbjct: 128 LKRKNLKLDWFKLYSFGMLIQITVLGCMLLMPEHLRYKVIGAVIQPVIVVFPVCTMLVGL 187 Query: 384 FTVIQHVLATGYF----SQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATIL 438 Q + SQ + + + ++GS D++ D+ + + Sbjct: 188 ILRRQRDRRKSEYDLTESQKLLNREQSLMRGLIGSLPDLISFKDVQGRYLGCNHAFEQFV 247 Query: 439 GLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 GL + G + L +D + + + V D Sbjct: 248 GLTEQELKGKMDQELKGNFKPSDIAGLD---EQEIIASGKVYSQDEWVVYPDGSKVLHET 304 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + +G + ++ DITE+K + I AF D+LT +PNR+ DRL ++ Sbjct: 305 IKKTFDGFDGTRYGLMSVSRDITERKNHEDQIQRLAFYDSLTQLPNRRMLQDRLQLLVTT 364 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 SA D+ + ID+D +K +ND G +GD +L+++ RI + ++ DI+ARL G+ F Sbjct: 365 SARDERFN-ALFFIDLDHFKTLNDTQGHNMGDQLLIAVAARIQDSVRDEDIVARLGGDEF 423 Query: 618 GIILISENNSLK-----IADFAIAMRKSIAMPINLLERE---------ITVTASIGFASW 663 ++ + A +R SI P L +E T SIG + + Sbjct: 424 VALISNLGEDEATAGHVAEKVAEKIRLSICQPYKLSIKENVDANNEMIFHCTPSIGISLF 483 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELY 721 S+ + E+LK A++AMY AK G N + F + + + +L A++N EL Sbjct: 484 KSNLTSPDEILKQADVAMYQAKAAGRNAIRFFDPAMQIALEENAAMLAELHQAIDNGELE 543 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L Y I + I G E L++W HP G +S +F+ +AEE +I I ++LE Sbjct: 544 LFYQIQID-ETKGIQGAEVLLRWFHPIRGMVSPLDFIPMAEESGLIIPIGRWVLESACHQ 602 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 + W + N I +N+++ E +Q +I +P +KL +ES+V+ N Sbjct: 603 LKVWENIPNRENWQISVNVSALQFQQENFVEIVQEIILSNNINPHGLKLELTESMVLDNV 662 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899 + + +L ++GI ++DDFGT S LS L +P +K + S + AI+ Sbjct: 663 DIIIEKMHQLNQLGIDFSMDDFGTGYSSLSCLKRLPLKQLKIDQSFVRDITTDPDDAAIV 722 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++II ++ +++ +IA+ + + + L GC Q + P+ +L+ Sbjct: 723 QTIINLSNSLKYDVIAEGVETQEQRQFLFNNGCSQYQGYLFSRPVPIAEFEELVSS 778 >gi|260599078|ref|YP_003211649.1| signaling protein [Cronobacter turicensis z3032] gi|260218255|emb|CBA33187.1| Uncharacterized signaling protein PA1727 [Cronobacter turicensis z3032] Length = 827 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 144/634 (22%), Positives = 279/634 (44%), Gaps = 28/634 (4%) Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 + + + LI + + I+ + + + + A + Sbjct: 211 VTMVWRSEDPGHDLIVVILPLLIFLMCFTGLVAGIAMRNALTKARLND------------ 258 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 ++ + + R + D +W+ D + I G Sbjct: 259 -ENAFLLEQNRLALAASERRFRDVAEATTDWIWETDDDLRFTWLSERFPVITGYRIADWL 317 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G D G+ R R +A + + +P++ + Sbjct: 318 GRRVTEFIQ---EDSATLEAWFHQP-GHGGHRAMTHCRYLSAQGHQRYCNLVAKPIATAE 373 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G + + G A D+T + ++ + + D LTG+PNR + L L T ++ Sbjct: 374 GGLS-FRGTATDVTLEVEAQARVQYLSLHDELTGLPNRVRMKEFLEGKLQSRPTREHP-L 431 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ +D+DK+K +ND+ G VGD++L ++ R+ L+ D++AR G+ F +I+ Sbjct: 432 AMISLDLDKFKPVNDLFGHGVGDELLHQVSARLRACLRDFDLVARQGGDEFILIIPDIER 491 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + I P ++ + EI + AS+G A + ++++L+ +++A+Y AK Sbjct: 492 KEALEQLCERILAEINRPFSVQDHEILIGASMGIALAPQDAVNATDLLRFSDIALYKAKS 551 Query: 687 RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + ++ R ++ L A+ + + LVY P + E+IV +EAL++W Sbjct: 552 SGRNGWVFYDAHMAEQIVQRREMENSLREAIRDRQFQLVYQPRYDMNAEKIVAVEALLRW 611 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP G + +F+ +AEE +I AI+ ++L RD Q +MP + I +NI++ + Sbjct: 612 HHPTLGLLMPDQFIPLAEETGLIIAISDWVLNAACRD-----AQRDMPGLAISVNISAVE 666 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L E +Q ++ T +P R++L +E+ + NPE+S L+ L+ +G+ L +DDFG Sbjct: 667 FRTPGLVERVQEALNATGLAPERLELEVTENATLSNPEQSLELMNGLKALGVRLLIDDFG 726 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL PFD +K + S + G ++ +I+ +II + K +I A+ + + Sbjct: 727 TGYSSLSYLRTFPFDGIKLDKSFVAGMPHSDNANSIVENIIGLGKAFSLSITAEGVETQE 786 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + +L CD Q + PL + L+ + Sbjct: 787 QLAQLKMYQCDETQGYLMCRPLPLERLKAQLRGQ 820 >gi|253997727|ref|YP_003049790.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253984406|gb|ACT49263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylovorus sp. SIP3-4] Length = 1237 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 129/573 (22%), Positives = 266/573 (46%), Gaps = 13/573 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + + S D + +D R+ + + Sbjct: 663 AIERHRSDTQLQERERELRSLLDNSPDTITRYDANCRRLYVNQRMLEYFDTTPDVVLHTT 722 Query: 450 RNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 P + + R + + + E ++A++ + IR+ P N +G Sbjct: 723 PRDFPGGSVTVEYEARIRQAF---LTGQPD--ELELPLKASNGKLLVRHIRMMPEFNPDG 777 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + + + DITE + + I AF D LT +PNR L+++ + + +A + + Sbjct: 778 TVASVLAVGRDITEIVEYRQRIHDMAFYDALTRLPNRAMLLEQMRSGILAAAGAQQV-FS 836 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 +MV+D+D++K+IN+ LG + GD +L R+ + L+ D+LAR+ G+ F ++L + Sbjct: 837 LMVLDLDRFKQINETLGHSTGDLLLCEAAARLQDHLREGDMLARMGGDEFVLLLRPGDAE 896 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ A + ++ P + RE+ V+ S+G A + + + +LK A+ AMYHAK + Sbjct: 897 PELIAMAQTLIQAFRQPFLVAGRELFVSTSVGIARYPTDSQDADTLLKFADTAMYHAKAQ 956 Query: 688 GGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N+ + + + I+ + + A++ EL L Y P L++ IVG+EAL++W+ Sbjct: 957 GRNNFQFYVSALTEVSSARIELETMMRRAIQQQELELYYQPQWDLLENRIVGVEALLRWN 1016 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 + G + + F+ +AEE +I + ++L R + W P+ I +N++++ Sbjct: 1017 QTEHGLMMPNVFIPVAEETGLIIELGEWVLTTACRQAVQWNKDK-DEPLKIAVNLSTRQF 1075 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + N L + ++ +T P IKL +ES+++ + L +G+ +++DDFGT Sbjct: 1076 IQNPLLASVTRILHETGCRPEWIKLEITESLLLESNLDILNTLNAFDAMGLVISIDDFGT 1135 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL P +K + S + + +++++I +A + ++A+ + ++ Sbjct: 1136 GYSALSYLNRFPVKQIKIDRSFVKDVPHDTHKSELVKAMISIAHVLNLDVVAEGVETQVQ 1195 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L GC +Q P+ ++ +L+E+ Sbjct: 1196 SDYLKASGCRAVQGYFYGRPMPLAALEAMLREQ 1228 Score = 71.5 bits (174), Expect = 7e-10, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 27/196 (13%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + + ++A + + D + LG + ++ Sbjct: 6 LVDAQKALADSKQLLAMAGDLARISMAIVDTDGHWLAANTPCCQQLGYEEAELLNT--SY 63 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 +H DR + + + E R + + W+ P+ + + +L Y Sbjct: 64 CDLVHPEDRRAEKLTWREVLAACCAQ-PLEHRFKHRSGRHVWLSSSFSPIRSQDNTLLFY 122 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + +IT++K + R L + + + D Sbjct: 123 LLRIENITDRKLGEQH---------------RVLMNFALNQVSEAAYLLDEN-------- 159 Query: 573 IDKYKKINDVLGIAVG 588 D+ +ND A+G Sbjct: 160 -DRLTYVNDAACHALG 174 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 2/152 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +++ + Q + S + V D V +D RV P +L + Sbjct: 240 RLVMVRDIGDRKAAEQQLRSQEQLYHTLVDHLPDPVIRYDSEGKRVFLNPVAEALLQRPT 299 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH--WMIIRIR 500 + G L ++ + + + +D Q H + +R+ Sbjct: 300 AELLGKTSLELNPASQALQEYVDRVKHVVATGEASDFDFFMDRQPSDLQVHNKVIAVRMV 359 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 P + G I + + D++ K++ Sbjct: 360 PERDPEGRIAGVLAVGRDVSMLKEAQRKFSSL 391 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 18/219 (8%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 R +D+ V + ++ I VLA G + + S + D++ Sbjct: 342 RQPSDLQVHNKVIAVRMVPERDPEGRIAGVLAVGRDVSMLKEAQRKFSSLLENIPDLIAR 401 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 +D+ + P G+ + + G P ++I + + Sbjct: 402 FDLQGRYLYVNPTFCETFGMKAADLIGQQDITWPGEAGQSAPILKSIQEVAQREEAITVT 461 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC-------NA 533 + + + + ++ R+ P S+ G ++ + + D+T+ + A Sbjct: 462 LDVAL---NGKPSYLEWRLIPESDQQGRVISVLAVGRDMTQLRMHERLEQMRLLILESLA 518 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 D + + LD +T ++ + ++M++D Sbjct: 519 HGDAFSSV------LDLVTRYMEQAK--PGFLCSIMLLD 549 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 7/124 (5%) Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 A+ + + D LG + + IH + Sbjct: 144 FALNQVSEAAYLLDENDRLTYVNDAACHALGYSREELLQMEMGD---IHRDGWPEITRT- 199 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + L E D + I + G R + + DI ++K + + Sbjct: 200 -TLNNSAAPHLVAEAMHTRQDGSQFPVEIHAS-LFEYEGVPYRLV-MVRDIGDRKAAEQQ 256 Query: 529 ILCN 532 + Sbjct: 257 LRSQ 260 >gi|220907740|ref|YP_002483051.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor [Cyanothece sp. PCC 7425] gi|219864351|gb|ACL44690.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor [Cyanothece sp. PCC 7425] Length = 884 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 123/438 (28%), Positives = 232/438 (52%), Gaps = 6/438 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 +++ + I AF D LT +PNR F+DRL L + + +V+ +D+D++K IN Sbjct: 436 QRQHKEQVIRYQAFHDLLTDLPNRALFIDRLNLALSNAHRSGE-KLSVLFLDLDRFKTIN 494 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +VGD +L ++ R+ L+ D +AR G+ F I+L + +A A M + Sbjct: 495 DTLGHSVGDQLLKAVAHRLTHCLREGDTIARWGGDEFTILLPQIHQVNDVAKTAQRMLSA 554 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698 + P +L E+ +T SIG A + ++K+A++A+Y AK G N + F S Sbjct: 555 LEQPFHLENHELYITPSIGIAIYDLDGHDGETLIKHADMALYQAKQLGRNTYQFFCSGLS 614 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + +R+ +++ L A+E E L Y P + + +I G+EAL++W HP+ G + FM Sbjct: 615 NGAPERLNLEKSLRHALERQEFLLYYQPQVNIKTGKITGMEALLRWKHPEMGLVIPQLFM 674 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I AI ++L +W+DQ PPI I +N++++ +L + ++ Sbjct: 675 SVAEESGLIVAIGEWVLRTACAQNKTWQDQGL-PPICIAVNLSARQFRQPDLTGMIARIL 733 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T P + L +E+ + + E ++ +L L+ +GI +++DDFGT S L++L P Sbjct: 734 DETGLPPQYLDLEITETTAIQDIEFTKRVLQELQDMGIQISMDDFGTGYSSLAHLQQFPL 793 Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +T+K + S + + + I+ ++I +A+ + ++A+ + + + L + C+ Q Sbjct: 794 NTLKIDRSFVRDVAANSRDAQIVTAVIGLARGLNLNVVAEGVENDEQLNCLESLHCEEAQ 853 Query: 937 DSHVASPLGFNSILKLLK 954 PL ++ ++L+ Sbjct: 854 GYIFNRPLEADAATEILQ 871 >gi|307610059|emb|CBW99594.1| hypothetical protein LPW_13641 [Legionella pneumophila 130b] Length = 792 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 169/789 (21%), Positives = 324/789 (41%), Gaps = 46/789 (5%) Query: 182 KDTVNSFTLYR---GIIIGVASLLAIFLTIFYMVNRSSMLIP--TFAMAWVVLGYISIDF 236 + L+ I G A + I + V +LI F + L + F Sbjct: 23 IEKEQVKLLFDQVGMAISGEALAVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSMLLF 82 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL 296 + + W + + SS + + F + + I + Sbjct: 83 YYNKQ---PTLFSTEKWLFLFNLGVVSSGLAWGFASSIMIPASSTLHQIFVVFLITGVTA 139 Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356 S Y P+ + +V + F I+ KG V L+ + I M Sbjct: 140 AANSLYSPVRLSY-----FLFLVTAFVPFTIWLFSKGQ---VYLLLGFCGIIY---MGIM 188 Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 N I+ L + + +++ + ++ + + + D Sbjct: 189 LFISYYSNKILINTLKMRFKISNLNSTKDILEKKVVDR--TKELEKILALTKSTLESTAD 246 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDS 470 + D+ + + G++ G + + + F + Sbjct: 247 GILVVDLKGNIEFCNQQFLKMWGISPGFIESHNDTETIQYVLNQLKNPEE---FLKQIKE 303 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + E D + R + I+ + D+T + Sbjct: 304 LYNNPKQESFDELHF--KDGKIF---ERYSQPHWLDNKIIGRVWSFRDVT----LRTRLA 354 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A D+LTG+PNR + DRL ++ N +V+ +DID +K IND LG GD Sbjct: 355 YQANHDSLTGLPNRTALYDRLDHAINYCKRL-NTSLSVLFLDIDNFKLINDSLGHDAGDI 413 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L +RR+ ++ D +AR G+ F ++L+ + A + K++A PI L + Sbjct: 414 LLYEFSRRLKGCIRHSDTVARFGGDEFVLLLM-TTEPKDVILVAQNILKAVAQPIKLPTQ 472 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-- 708 E+ VT SIG + + I +S +LKN++ AMY AK G N+ + + S + ++ Sbjct: 473 EVIVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQ 532 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 + A++N+E +++Y PI L + E+VG EALI+W HP G +S EF+ IAEE +I Sbjct: 533 TQIHNAIKNNEFFILYQPIYNLRNGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLIN 592 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 + ++L +W+ +P I I +N++ + L ++ E ++++ ++ P + Sbjct: 593 QVGEWVLRNACIQNKTWQ-LMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYL 651 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 ++ F+ES ++ L ++ ++GI + +DDFGT S LSYL PF+ +K + S + Sbjct: 652 EIEFTESTMIQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFNKLKIDRSFI 711 Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + +I+ +II MA ++E ++A+ + + + GCD +Q P+ Sbjct: 712 QNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKA 771 Query: 947 NSILKLLKE 955 + +KL+++ Sbjct: 772 DKFVKLMQK 780 >gi|255524895|ref|ZP_05391843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium carboxidivorans P7] gi|255511373|gb|EET87665.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium carboxidivorans P7] Length = 916 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 153/584 (26%), Positives = 264/584 (45%), Gaps = 16/584 (2%) Query: 378 IVILIGFTVIQ-HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 + + T IQ + ++ + S A+ + D + + Sbjct: 339 LFMFHDVTKIQEYTNNLKQLNEELSISDRIISTAME----GILITDSSGNIIKVNNSFER 394 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I G + G L H N + + + + + Y G + E R + + + Sbjct: 395 ISGYKGEELIGKNPRVLKSGHHN-KSFYLNMWNDLLTY--GYWEGEIWNRKKNGELYPKW 451 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + I + G I YI I+ DIT+ KK+ + + A+ D LTGIPNR F +RL L Sbjct: 452 MSITCLKKQGGIIENYIAISTDITKIKKTEDKLQSLAYYDLLTGIPNRTLFYERLENALI 511 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + + ++ +D+D +K IND LG A GD +L + RI + D ++RL G+ Sbjct: 512 RANNNKG-SVALLFMDLDGFKVINDSLGHAAGDLLLKEVAARIESSISRSDTVSRLGGDE 570 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +IL + NN A ++ I +P ++L REIT+ SIG A + T +++ Sbjct: 571 FTVILENVNNHEDAKAAAESIIGKILLPYSILGREITLGVSIGIALSPYDESTVEGLVRK 630 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDE- 733 A+ AMY AK G R + +++ L A++N+E L P I + Sbjct: 631 ADAAMYDAKESGKGKYSFSSDEIERRNHEILEMQIKLNKALDNNEFNLYLQPQIIFAENE 690 Query: 734 -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +I+G EALI+W + +F+ ++E MI I ++LE I R +D Sbjct: 691 FKIIGAEALIRWKTIDGKIFTPDKFIPVSETNRMIIPIGNWILEEIFRIDKVLKDNGIN- 749 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I + INI+SK + L ++ L + + + +ES ++ + E + L ++ Sbjct: 750 -IKLSINISSKQFENGNLVSKIKELFKENDSQNIDLVIEITESFLLQDTESAIQSLLEIK 808 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911 K+GI +++DDFGT S LSYL +P D +K + S + + + +II MAK + Sbjct: 809 KLGIEISIDDFGTGFSSLSYLARLPVDYLKIDKSFIDDILSTNHKNLTSNIISMAKTLNL 868 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +A+ + E L GCD +Q + + PL + +K +K+ Sbjct: 869 KTVAEGVETEEQANRLMDEGCDELQGYYFSKPLIIDDFIKYVKQ 912 >gi|229071016|ref|ZP_04204242.1| Sensory box/GGDEF [Bacillus cereus F65185] gi|228711956|gb|EEL63905.1| Sensory box/GGDEF [Bacillus cereus F65185] Length = 785 Score = 502 bits (1293), Expect = e-139, Method: Composition-based stats. Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 38 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 94 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 153 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 207 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 267 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 268 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 324 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ E I AF D +T I NR F L + + Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 383 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 442 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 443 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 561 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W + + Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 620 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 621 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 680 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 740 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 780 >gi|292491335|ref|YP_003526774.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291579930|gb|ADE14387.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 694 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 134/586 (22%), Positives = 260/586 (44%), Gaps = 18/586 (3%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 ++ + Q ++ R S + + D+V D+ LG Sbjct: 112 LIPAVERELREAESRRQRQAADNERIRLSSILEATPDLVAITDLKGRIHYINRAGRRWLG 171 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDS----FVGYRRGRLQYEFRVRAADNQFHWM 495 L + L + + + L G + E + ++ + Sbjct: 172 L--DEKNRCPMTLLT----DYQPFWTAALMENNALPSALAEGVWEGEMVILDSNGSEIPV 225 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 I N + IA DI E+K + + D LT +PNR DRL+ L Sbjct: 226 SQVILSHRNQQNQVEFLSTIARDIRERKHYEQALQHRVTHDALTHLPNRILLRDRLSRAL 285 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + + +L V+ +DID +K+IND LG GD+ L + +R+ + ++ D + R G+ Sbjct: 286 INAERNQHL-IAVLFLDIDNFKQINDALGHLAGDNCLRMVGQRLAQCIRTNDTVGRYGGD 344 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F IIL + + + +R +++ P + ++ +T SIG + + +LK Sbjct: 345 EFLIILGNLHAPADVEIIIKKIRAALSQPFRINNHDVFITLSIGASLYPQDGGDEENLLK 404 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +++ AMY AKH G + + R + ++ DL A+E E L Y P + L Sbjct: 405 SSDTAMYTAKHTGRDQFRFYAPKMKDRGRELLALETDLRRALEREEFILHYQPQLDLSTN 464 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +I +EAL++W H + G +S +F+ + E+ +I + ++LE + +W P Sbjct: 465 QITAVEALVRWQHAQRGLVSPGDFIPLLEQTGLIVEVGNWILETACKQAQAWWAWGY--P 522 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + I +N +++ + L + ++ L+ K +P+ ++L +ESVVM + + + +L L+ Sbjct: 523 LRIAVNCSARQFQQH-LLDTVRQLLQKYSLNPACLELEVTESVVMQDVQYATHILQHLKV 581 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIET 911 +G++L +DDFGT S L+YL P ++K + S + ++ AI +I+ + +++ Sbjct: 582 MGVTLAIDDFGTGYSSLAYLKRFPIHSLKIDHSFVHELSDDSEDAAIAEAIVLLGHSLDL 641 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +IA+ + E + C IQ V P+ ++ L++ R Sbjct: 642 EVIAEGVESEAQAQFFQNRQCHRIQGYWVGRPMPAENLFPLIEARN 687 >gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] Length = 1499 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 126/433 (29%), Positives = 224/433 (51%), Gaps = 5/433 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + I A+ D LT +PNR F +L +++ S + V+ +D+D++K +ND L Sbjct: 1045 RAEKDIHQLAYHDVLTSLPNRTLFHKQLGELMNRSHLRGE-QFAVLFLDLDRFKLVNDTL 1103 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L + RI L+ D++ARL G+ F +IL + A+ A + ++ Sbjct: 1104 GHEVGDLLLKAAADRIVGCLRSNDMVARLGGDEFTVILEKIESPRVAAEVAAKICSVLSK 1163 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702 +E+ ++ SIG + + S ++K+A+ AM+ AK +G ++ + + + Sbjct: 1164 VFAFSGQEMYISTSIGISLYPGDGEDVSTLVKHADTAMFRAKEQGNSYQFYEKGMETAAV 1223 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 R+ ++ +L A+E +EL L Y P I L EI LE LI+W HP+ G I SEF+ +AE Sbjct: 1224 KRLGLEAELRRALEQNELALYYQPQINLGTGEIATLETLIRWHHPEHGLIPPSEFIPLAE 1283 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I +I ++L + SW Q P I +N++ ++L +L + + ++ +T Sbjct: 1284 ETGLIASIGAWILREACTQMQSWL-QRGFGPFHIAVNVSGRELEREDLVDKIVTILKETG 1342 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P ++L +ESVVM + RLR++GI +DDFGT S L+YL P D +K Sbjct: 1343 LPPKWLELEITESVVMKGAGAAIPKFRRLREMGIKFAIDDFGTGYSSLNYLKSFPVDILK 1402 Query: 883 FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + S AI++ II +A ++ ++A+ + + + L CD Q ++ Sbjct: 1403 IDRCFIHDVVSNPDDAAIIKGIIALAHSLRLKVVAEGVETQAQEEFLKAHQCDRFQGFYL 1462 Query: 941 ASPLGFNSILKLL 953 + PL I + + Sbjct: 1463 SEPLSAAEIEQAI 1475 >gi|229166600|ref|ZP_04294352.1| Sensory box/GGDEF [Bacillus cereus AH621] gi|228616854|gb|EEK73927.1| Sensory box/GGDEF [Bacillus cereus AH621] Length = 805 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 163/760 (21%), Positives = 305/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + I F + N S + ++ Sbjct: 56 ILFLSIGDVFLSFIFPIIDLLLLLLGISLIFRPAIFNAKSK----LFIFILVLTGLAITD 111 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY---------PMVTASIARITLASI 318 +L+ YL + + + + ++ + ++ + + L Sbjct: 112 YLYFYLQDDLSDRSLILLRCLYRVFLLLIAIAASISKNASSRRNYFIIDPTFGKKLLVIF 171 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 172 PYLAVAVLIGFTLKEQTSSSTLITGNCIAFVFVLIRHTIVRMQNSD------LTEMLKVF 225 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + V Q S + + ER D + + + + +L Sbjct: 226 NNQLEQKVSQRTEDLINKSNDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 285 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G DR L LQ + + W + Sbjct: 286 GKNSDELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 342 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT KK + I AF D +T I NR F L ++ + Sbjct: 343 IVPIM-IEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQKELEKSIERA 401 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 402 RKTQG-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLLPAIPLARIGGDEFA 460 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ + ++ D + + + + ++ SIG A + I ++ +L++A+ Sbjct: 461 IIVHNHT-EQQLLDLCETLFRITEEAFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 519 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + ++ Sbjct: 520 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPKALENNELFLLYQPQVDSKTGMVI 579 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L+ R + W + + Sbjct: 580 GAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKM 638 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + S I L +E + M + + + L L+ G+ Sbjct: 639 GINLSAIEFEQKDFVQTIISTIEEVGVPASSIDLELTERIAMVDEKETLAKLKALKSYGV 698 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+ +II +A + +I Sbjct: 699 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGNSTDGNEIIHTIISLAHTLNMKVI 758 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + +K L Sbjct: 759 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLS 798 >gi|90410462|ref|ZP_01218478.1| hypothetical protein P3TCK_20925 [Photobacterium profundum 3TCK] gi|90328703|gb|EAS44987.1| hypothetical protein P3TCK_20925 [Photobacterium profundum 3TCK] Length = 1053 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 140/548 (25%), Positives = 250/548 (45%), Gaps = 9/548 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 S AV S D V D G+ S G L + Sbjct: 494 LSHAVEQSDDTVLITDKNGIIEYVNHSFEAFTGITSAEALGRDSRTLMKGANETTSEIKH 553 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + + +DN + I P+ N G I YI DITE+ Sbjct: 554 IHQQLKAGKT--IHRVITRKKSDNTVCYEDETISPIRNDTGKISHYISTGKDITERVLFE 611 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + A D LT +PNR L + + + V ID+D +KKIND LG Sbjct: 612 SKLHKLAHYDLLTELPNRLLLLQYIEQAITNAEEM-KTSVVVFNIDLDFFKKINDSLGHD 670 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD VL+++ +RI L+ D+LARL G+ F I++ S+ +S IA A + +I ++ Sbjct: 671 VGDKVLITIAKRITRSLRDEDVLARLGGDEFAILIQSDTSSQSIATLAERIINNICASLS 730 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + E+ +++TAS+G A + + + S +LKN+++A+YHAK +G N F R Sbjct: 731 IEEKSLSITASMGIAVYPENSVDSDALLKNSDIALYHAKDQGRNRYCFFTPKMGIESVQR 790 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + ++ DL ++ + Y P + ++ G+EAL++W + + S + I E Sbjct: 791 LQLESDLRKSLGTDQYTFFYQPKVNAKTHKVCGIEALLRWKNEEGQIQSPLGIIPILENS 850 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + ++ + + W+ + +NI+++ LL +++ + + ++ + + Sbjct: 851 GLIVNVGETLINQACEQLAIWQSNGLD--LHFALNISARQLLHSDIVDTVYKAVTMSGCN 908 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P ++L +ESVVM + + + L +L +G+ + +DDFGT S L+YL P +K + Sbjct: 909 PHYLELEITESVVMADVKLAFDKLIKLEALGVKIAIDDFGTGYSSLAYLSRFPIHILKVD 968 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + + + I RSII +A N+ ++A+ + E IK LT +G + Q + Sbjct: 969 REFVQDLPMNKDSVTITRSIIELAHNLSMLVVAEGVENEDQIKFLTNIGVEEFQGYYFGK 1028 Query: 943 PLGFNSIL 950 P+ + Sbjct: 1029 PMPIDEFE 1036 >gi|206969232|ref|ZP_03230187.1| sensory box/GGDEF family protein [Bacillus cereus AH1134] gi|206736273|gb|EDZ53431.1| sensory box/GGDEF family protein [Bacillus cereus AH1134] Length = 828 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 81 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 137 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ E I AF D +T I NR F L + + Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W + + Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 663 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 723 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 823 >gi|52141742|ref|YP_085088.1| sensory box/GGDEF family protein [Bacillus cereus E33L] gi|51975211|gb|AAU16761.1| sensory box/GGDEF family [Bacillus cereus E33L] Length = 911 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 314/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C++IQ + + P+ +S Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCEFIQGYYYSKPIHADSFS 900 Query: 951 KLLKE 955 LLK+ Sbjct: 901 TLLKK 905 >gi|304406750|ref|ZP_07388405.1| diguanylate cyclase/phosphodiesterase [Paenibacillus curdlanolyticus YK9] gi|304344283|gb|EFM10122.1| diguanylate cyclase/phosphodiesterase [Paenibacillus curdlanolyticus YK9] Length = 630 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 153/623 (24%), Positives = 280/623 (44%), Gaps = 26/623 (4%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397 L AW++ + +G +++ + + G+ + ++ Sbjct: 25 KLYKTAWLMSALLLVGSALSVFWLANMPLALGLAGSGICMSIV-------------AATQ 71 Query: 398 QGIFSDGERQSLAVLGS---GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q + + R S+A+ G D + A LG S Sbjct: 72 QAMAAVRTRSSIALTGMQHNPLPFLALDRTGAIIQLNEAAAEALGYERHSHALVGELLER 131 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 Y+ D + + + R + P+ +G + Sbjct: 132 YVDSGDLALLEANRRNAYEGKIEQATIGVRSLT--GMSMSWDVLFAPVGIQSG-TSGCVL 188 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 IA D++E+K+ E + AF D++TG+PNR+ F++RL +L + + V +DID Sbjct: 189 IAQDMSERKRHDERVKHMAFYDDMTGLPNRRLFVERLGEMLAEV-REPDSMLAVCCLDID 247 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K IN G GD +L+ + R+ D + R+ G++FG+IL ++N+ +I Sbjct: 248 HFKLINASYGHDYGDMLLLQMADRLLRGCTDVDFVCRMDGDKFGVILAAKNSEGQIEAAV 307 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 ++ ++ P L I +TAS G++S + ++L+NA LA+ AK G N Sbjct: 308 QSLLSALEEPFELQGIPIQLTASAGWSSSAQEPLYPDKLLRNANLALIKAKENGRNECLI 367 Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 +R + +R+ ++ DL AV N E L+Y P + +IVG+EAL++W HP G + Sbjct: 368 YREEWDEASLERLRLQHDLRRAVANREFVLLYQPQYDMNTGDIVGVEALLRWHHPLRGLV 427 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S+F+ +AEE +I I ++LE R SW+D PI + +N++ + Sbjct: 428 QPSKFIPLAEESGVIVQIGQWVLEEACRQNKSWQDAGLA-PIPVSVNLSMRQFWQPNFTA 486 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++A+++K P ++L +ES+ M +P++ L L +GIS+++DDFGT S Y Sbjct: 487 SVEAVLTKVGLEPRYLELEITESMTM-DPDKLTQSLNELTALGISISIDDFGTGYSSFHY 545 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L + P D +K + S ++ I+ +II MA N+ +IA+ + ++ L Sbjct: 546 LKHFPVDRLKIDRSFVSDIEQDPGDAEIVAAIIAMAHNLNMQVIAEGVETAQQVQFLKMH 605 Query: 931 GCDYIQDSHVASPLGFNSILKLL 953 CD +Q + + P+ I ++L Sbjct: 606 LCDEMQGYYGSPPVTSERIAEML 628 >gi|228985623|ref|ZP_04145776.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774018|gb|EEM22431.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 785 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 163/754 (21%), Positives = 306/754 (40%), Gaps = 20/754 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ + + ++ + + G + S+ Sbjct: 38 ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + H + + + + ++ P +SI + + +I Sbjct: 94 YLYFYLQDDLSHRSLILLRCLYRVFLLFI-AIAATIPRSASSIRNYFIINPTFGKKLLVI 152 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + L L + + Sbjct: 153 FPYLAVAILIGFTLKEQTASSTLITGNCIAFVFVLIRHTIVRMQNKDLTETLKVFNNQLE 212 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 TV Q S + + ER D + D + + +LG S Sbjct: 213 QTVSQRTRDLINKSNDLIKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESA 272 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G D+ + + LQ + + W + I P+ Sbjct: 273 ALIG--EECFSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 329 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G + DIT+ K+ E I AF D +T I NR F L + + + Sbjct: 330 -IEGQAFGSYVMVKDITKMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTKD 388 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ ID++++K IND LG ++GD VL +T+R L LAR+ G+ F II+ + Sbjct: 389 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVTKRFRTCLSPSLPLARIGGDEFAIIVHN 447 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 448 RTEKQ-LLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 506 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++G EAL Sbjct: 507 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEAL 566 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G IS EF+ IAEE I +I + L++ R + W + + IN++ Sbjct: 567 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQKACRQLKEWHSA-GFSNLKMGINLS 625 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + + + I + + I L +E + M + + + L L+ G+ L++D Sbjct: 626 AIEFEQKDFVQIIISTIGEIGVPANSIDLELTERIAMVDEKETLAKLKALKSYGVHLSID 685 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P DT+K + G + I+++II +A + +IA+ + Sbjct: 686 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGISTDGDEIIQTIISLAHTLNMKVIAEGVE 745 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L R C IQ + + P+ + + L Sbjct: 746 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFINFL 779 >gi|296329665|ref|ZP_06872150.1| putative sensor protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674062|ref|YP_003865734.1| putative sensor protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296153163|gb|EFG94027.1| putative sensor protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412306|gb|ADM37425.1| putative sensor protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 800 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 157/805 (19%), Positives = 314/805 (39%), Gaps = 61/805 (7%) Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV------NLPS 247 I + + A + + ++ ++ W++ G + + FG S ++ Sbjct: 12 ICLSILIACAASYISLELSRKVTINTGLKSIVWLIGGSLIMGFGIWSMHFVGMMAVHMEM 71 Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 + ++ F+ +Y +R + + A + M + Sbjct: 72 PMQYEFMPLIASIGAAVSGSFVSLYF-VSRNILTYYRLLTGSVVLGASIASMHYIGMSSI 130 Query: 308 ASIARITLASIVLYYTYFIIY-----------HGMKGYERAVLLIPAWILIFIWFIGLWM 356 + + + + + I +K + ++ I + M Sbjct: 131 SRVMIMYEPILFTFSIIIAIAASFVSLKIFFDLALKKHSDHLMFYKVISSIVMGIGISGM 190 Query: 357 AITKRLDNDII---------QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER- 406 T L + V LI F + +L + + + ER Sbjct: 191 HYTGMLAASFHEDMGPPGSHMEVQTFHWSIFVTLIVFCIQTLLLFSSHADRKFIKQSERI 250 Query: 407 -------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATI---LGLASGSMHGPIRNWLPYI 456 QSL V D ++ + D +++ + G + Sbjct: 251 KDNEQRFQSLIVHNI-DAIFILSLDGDIISSNHAGEDMIRKFGFSMHDWRHYTS------ 303 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D ++ + + + Q + I + P+ N ++ I Sbjct: 304 -----KKINRLFDQVKKEKQA-INSDSDLITEKGQ-FHLNITLIPV-EVNQELDSIYVIC 355 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D+T+Q ++ + I A D+LT +PNR+ + LT +++ T +N V +D++++ Sbjct: 356 KDMTKQYRAEKEIHRMAHYDSLTDLPNRRHAISHLTAVMNREHTLNNSTV-VFFLDLNRF 414 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIADFAI 635 K IND LG VGD +L RR+ ++ +ARL G+ F IIL ++ + A Sbjct: 415 KVINDALGHNVGDQLLQLAGRRLSSVVPDNGFIARLGGDEFIIILTDANTSTGEADVLAR 474 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + P + + + + SIG A E++K A++AMY AK R + + Sbjct: 475 KIIQKFKKPFKIQDHTLITSVSIGIAISPKDGTDGLELMKKADMAMYAAKERNKSKYRYY 534 Query: 696 RVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 S + V + ++ L A+EN+ L Y P ++++ G EALI+ P Sbjct: 535 SFSIGNKETVKLNQEMVLREAIENNRFVLHYQPQFSAKNQKMTGAEALIRLVTPDGQLCP 594 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ +AEE +I I ++++ + W D+ + + INI+++ +L Sbjct: 595 PGEFIGVAEETGLIIDIGKWIVDEACKQARVWYDKGYD--LSVAINISARQFQSEDLIPL 652 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ + K P +++ +ES+ M N + S+ +L L ++GI +++DDFGT S LSYL Sbjct: 653 IKNALDKYQLPPQLLEVEVTESMTMDNLDHSKKVLSSLTELGIRISIDDFGTGHSSLSYL 712 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P +K + S + K I +II M + +IA+ + + L G Sbjct: 713 KDFPIHRLKIDKSFIDDIQTHPKSEQITGAIIAMGHQLSLQVIAEGVENSAQKQLLYEKG 772 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 CD++Q + P+ + +L+ E+ Sbjct: 773 CDHLQGFFFSRPIPPEQLEQLIIEQ 797 >gi|120611510|ref|YP_971188.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120589974|gb|ABM33414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax citrulli AAC00-1] Length = 1043 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 124/586 (21%), Positives = 237/586 (40%), Gaps = 25/586 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 V+Q + R + V I + Sbjct: 449 HIAVVQDISDRKRMEAAQHDSEARLRQILYRLPVGVCLVARDGTLSFRNERFEQI-CRHA 507 Query: 443 GSMHGPIRNWLPYIHIN--DRDNFRTILDSFVG----YRRGRLQYEFRVRAADNQFHWMI 496 + +R W + + R+ ++ E+ + D + Sbjct: 508 DAAPATVREWWHRVIPDAPRREQAVADWEAACAAALAGDGTLASREYAITCGDGSVRTVD 567 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + + + + D+++ K + E I A+ D LT +PNR+ +DRL L Sbjct: 568 MAGVLLDGA------CLITMVDLSQHKAAEEEIHYLAYYDPLTQLPNRRLLVDRLQQALA 621 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 S V+++D+D +K +N+ G GD +L + +R+ ++ D +AR G+ Sbjct: 622 ASVRRGRC-GAVLMLDLDNFKTLNETQGHERGDMLLRQVAQRLRGCVQNEDTVARHGGDE 680 Query: 617 FGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 F ++L + + D + ++ P L T S+G + ++ T Sbjct: 681 FVVVLEDLGQSPQGAAARAEDMGQKILAAMRHPFTLEGEPHHTTLSMGVTVFQGARETVD 740 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 E+L+ +LAMY AK G N + + S ++ DL + + L Y P + Sbjct: 741 ELLQRTDLAMYQAKASGRNALRFYDPQMQASVAARAALETDLREGLGRGDFELFYQPQVN 800 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 IVG EAL++W HP G +S EF+ +AEE +I + ++L + W Sbjct: 801 H--GRIVGAEALLRWRHPARGFVSPGEFIPLAEETGLILPLGEWVLRTACERLAQWSRHP 858 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 + I + +N++++ + A ++ T R+KL +ES++ + E + + Sbjct: 859 VLSRISLSVNVSARQFHQGGFVGQVLAALAGTSAEGRRLKLEMTESLLQQDLEDTIQKMQ 918 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907 +LR G+ +LDDFGT S L+YL +P D +K + S + + +I R+I+ + Sbjct: 919 QLRAYGVGFSLDDFGTGYSSLAYLKRLPLDELKIDQSFVRDVLTDPNDASIARTIVALGT 978 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ +IA+ + E L R C Q ++ P+G + +L+ Sbjct: 979 SLGLRVIAEGVETEAQRAFLERNHCHAWQGYLLSRPVGADDFEQLV 1024 Score = 84.2 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 48/152 (31%), Gaps = 18/152 (11%) Query: 407 QSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + V D R V ILG A + H +D+ Sbjct: 345 FQTLFDQAAVGVAQVDTATRRFVRANARFCEILGYAPQELL--ALTVREVTHQDDQAESE 402 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 +D + +YE R D + W +RI M + G ++I + DI+++K+ Sbjct: 403 AAIDRIATGVQQEYRYEKRYLRKDGEMVWAELRIATMRHGRGQPAQHIAVVQDISDRKRM 462 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 A D+ RL IL Sbjct: 463 EA-----AQHDS----------EARLRQILYR 479 >gi|327438382|dbj|BAK14747.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Solibacillus silvestris StLB046] Length = 567 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 138/564 (24%), Positives = 249/564 (44%), Gaps = 19/564 (3%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYI 456 Q + + +A+ S I+ D I + G L Sbjct: 14 QLTVEELQNIKVALDESS-ILAVTDQRGIITIVNDRFCKISKYERCELIGKDHRLLNSGY 72 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H + F+ + + + E RA D +W+ I P N+ G +YI I Sbjct: 73 HP--KTFFKEMWRTIGSGKT--WNGEVCNRAKDGSIYWVQTTIVPFLNAKGKPYQYISIR 128 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT QKK E I A D+LTG+PNR+ L+ L T++++ + L ++M+ D++++ Sbjct: 129 TDITAQKKIGEMIHI-AHHDDLTGLPNRRMLLNDLKTLIEV----EQLPFSLMLFDVNRF 183 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG VGD L + R L RLSG+ F IL + S + A Sbjct: 184 KNINDGLGHHVGDMFLAEIAERTKTLTSPFITFYRLSGDEFICILRN---SDLLESAAED 240 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 ++ NL + SIG ++ ++ ++LK A+ AMY AK ++ Sbjct: 241 IQALFKSQFNLNNHTFYASISIGAVNYPEHGYSAQDILKYADTAMYEAKKSNNRGFVIYK 300 Query: 697 VSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 S + ++ L A++ L Y P + L +I G+EALI+W + G + Sbjct: 301 KQQRFSYNQLLTLETKLHDAIKKEAFELYYQPKVNLQTNKIEGMEALIRWFDDELGFVPP 360 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ AEE +I I+ +++ + R + W ++ + + +NI+ L + Sbjct: 361 DQFIPFAEEFGLISDISEWVIAKAGRQVTEWNERY-NLNLRVAVNISPNHLKAENFIVRL 419 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ + SPS +++ +E + + +L ++ I+L +DDFGT S LSYL Sbjct: 420 NRILKQHGISPSALEIEITEMSFLDQNSDLLHTIKQLSEMDITLAIDDFGTGYSSLSYLK 479 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + + + IA++ ++I +A+ + ++A+ + D+ L C Sbjct: 480 KFPVDLLKIDRTFIHEMYKNNADIAMVSAMISLARALNLKVVAEGVEEHADLHLLREFDC 539 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 +++Q + + PL + K L E+ Sbjct: 540 EFVQGYYYSRPLTIDDFSKRLSEK 563 >gi|229179805|ref|ZP_04307152.1| Sensory box/GGDEF [Bacillus cereus 172560W] gi|228603634|gb|EEK61108.1| Sensory box/GGDEF [Bacillus cereus 172560W] Length = 828 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 164/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 81 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 137 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ E I AF D +T I NR F L + + Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W + + Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 663 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ GI Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGI 723 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 823 >gi|52841587|ref|YP_095386.1| inner membrane protein PLUS sensory box protein LssE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628698|gb|AAU27439.1| inner membrane protein PLUS sensory box protein LssE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 792 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 172/775 (22%), Positives = 324/775 (41%), Gaps = 43/775 (5%) Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIP--TFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250 I G A + I + V +LI F + L + F + + Sbjct: 37 MAISGEALTVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSMLLFYYNKQ---PTLFST 93 Query: 251 LIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310 W + + SS + + F + + I + S Y P+ + Sbjct: 94 EKWLFLFNLGVVSSGLAWGFASSIMIPASSTLHQIFVVFLITGVTAAANSLYSPVRLSY- 152 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 +V + F I+ KG V L+ + I I L+++ N I+ Sbjct: 153 ----FLFLVTAFVPFTIWLFSKGQ---VYLLLGFCGIIYLGIMLFISYY---SNRILINT 202 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L + + +++ +A ++ + + + D + D+ + Sbjct: 203 LKMRFKISNLNSTKDILEKKVADR--TKELEKILALTKSTLESTADGILVVDLKGNIEFC 260 Query: 431 TPDIATILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + G+A G + + + F + + E Sbjct: 261 NQQFLKMWGIAPGFIDSHNDTETIQYVLNQLKNPEE---FLKQIKELYNNPKQESFDELH 317 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 D + R + I+ + D T + A D+LTG+PNR Sbjct: 318 F--KDGKIF---ERYSQPHWLDNKIIGRVWSFRDET----LRTRLAYQANHDSLTGLPNR 368 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + DRL ++ N +V+ +DID +K IND LG GD +L +RR+ ++ Sbjct: 369 TALYDRLDHAINYCKRL-NTSLSVLFLDIDNFKLINDSLGHDAGDILLYEFSRRLKGCIR 427 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D +AR G+ F ++L+ + A + K++A PI L +E+ VT SIG + + Sbjct: 428 HSDTVARFGGDEFVLLLM-TTEPKDVILIAQNILKAVAQPIKLPTQEVIVTTSIGISLFP 486 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYL 722 I +S +LKN++ AMY AK G N+ + + S + ++ + A++N+E ++ Sbjct: 487 KDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFI 546 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 +Y PI L E+VG EALI+W HP G +S EF+ IAEE +I + ++L Sbjct: 547 LYQPIYNLRSGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLRNACVQN 606 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 +W+ +P I I +N++ + L ++ E ++++ ++ P +++ F+ES ++ Sbjct: 607 KTWQ-LMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYLEIEFTESTMIQKST 665 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900 L ++ ++GI + +DDFGT S LSYL PFD +K + S + + +I+ Sbjct: 666 PIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFDKLKIDRSFIQNCTTNPNDASIVE 725 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +II MA ++E ++A+ + + + GCD +Q P+ + +KL+++ Sbjct: 726 AIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADKFVKLMQK 780 >gi|291566948|dbj|BAI89220.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 1276 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 156/639 (24%), Positives = 273/639 (42%), Gaps = 85/639 (13%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIR 450 Q + ER + V S D + + V + G + G Sbjct: 629 RQREAEQALRESEERYRMLVELSPDTIAIY-CDEQIVYINRAGWQLFGAEKPEDIIGRSI 687 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQ---YEFRVRAADNQFHWMIIRIRPMSNSNG 507 D D IL+ + R +E ++ D + + I P +N +G Sbjct: 688 YDFL-----DYDQTAVILNQKLPGESHRQSVGLFEQQLIRLDAKMIDVEIAGIP-TNYHG 741 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 I DI+++K++ +L AF D LT +PNR F +L+ L S D N + Sbjct: 742 R-DAIQIIIRDISDRKQAQAQLLQAAFYDPLTELPNRSLFNQKLSEALRRSKEDSNYQFA 800 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENN 626 V+ +D+D++K +ND LG +GD +L+ + R+ + D +ARL G+ F I++ ++ Sbjct: 801 VLFLDLDRFKVVNDSLGHVIGDFLLIEIAHRLEVCVTNPGDTIARLGGDEFTILVDHISD 860 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK---------------ITSS 671 + + A + + ++ P + EI TASIG Sbjct: 861 PQQALELAGKIHQELSQPFYIQGHEIFTTASIGIVPSRGYALKKSANTDNYHCLLYNNPE 920 Query: 672 EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA--------------- 714 + L++A++AMYHAK +G E F + + + ++ DL A Sbjct: 921 DFLRDADIAMYHAKEQGKARSEVFDLSMHTQTLALLQLETDLRKAIFGYQQLNLTPHHIS 980 Query: 715 ---------------------VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++ + Y PI+ L+ IVG EAL++W HP+ G +S Sbjct: 981 SSESNPLASAISDVSVMPNQLPSLNDFIIHYQPIVCLITGRIVGFEALVRWIHPRRGLVS 1040 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP---------IFILINIASKD 804 +EF+ +AEE +I + ++LE R + SW+ Q + I +N++ K Sbjct: 1041 PAEFIPVAEETGLIVPLGAWVLEESCRQLSSWKQQLQSWDRSPQSVYSTLTISVNLSGKQ 1100 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L E + A++++T P IKL +ES+++ N + + + L +L+ I L +DDFG Sbjct: 1101 LNQLNFIEQIDAILARTNCDPKSIKLEITESMLVENFQTALIALAQLKARKIHLAIDDFG 1160 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK----------RIAILRSIIPMAKNIETTII 914 T S LSYL +P ++K + S + E+ I+++II +A N+ + Sbjct: 1161 TGYSSLSYLHQLPLKSLKIDQSFVQRLQEEPSHYIDKYNQPQQIIKAIISLAHNLGLEVT 1220 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+ I ++ L +GCDY Q + PL +L+ Sbjct: 1221 AEGIETRQQMQFLHHLGCDYGQGYLFSKPLPAEEATQLM 1259 Score = 85.0 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 6/146 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGL 440 I H+LAT Q + A+ S + + D + I G Sbjct: 312 LEAIAHILATAIERQRADERLQLMERAINSSRNGIIITDATDSDNRVIFANSGFEKITGY 371 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + G +L + L + + R E + D W + I Sbjct: 372 SRHQVIGRNCRFLQGKDSD--PKALAELRNAIEQGREC-NIELQNYRPDGSSFWNELSIS 428 Query: 501 PMSNSNGDILRYIGIANDITEQKKSL 526 P+ NS G + +IGI DI++ K++ Sbjct: 429 PVYNSQGFLTHFIGIQTDISDHKQAE 454 >gi|94500398|ref|ZP_01306930.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65] gi|94427433|gb|EAT12411.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65] Length = 1407 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 129/576 (22%), Positives = 265/576 (46%), Gaps = 20/576 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + V + + E S + + + G Sbjct: 831 LATCRDVTQRRFIEHEARTASE----VFENSSEAIMMTTSTGLISRVNRAFTHLTGFDGQ 886 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G +I + + + G Q E + H + + Sbjct: 887 HVIGVNP--KQFIAKDVSHQTMQDIRDALLVD-GYWQGELDYINRKGEKHPSWTGVTALK 943 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G I +I I++DIT +K++ I A+ D LTG+PNR + L ++ + Sbjct: 944 DEMGQIQSHIIISSDITHRKQTEARIQHLAYFDPLTGLPNRAQMHEALDRLMAK----EE 999 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ ID+D++K IND +G GD VL + R+ E + ++++R+ G+ F +I+ + Sbjct: 1000 SQLALLFIDLDRFKPINDTMGHPAGDQVLKEVASRLKEAVGAKNLVSRIGGDEFTVIMAT 1059 Query: 624 ENNSLKIAD----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 + + + + + P + +R++ ++AS+G A + + ++ +++L+NA+ Sbjct: 1060 LPETEQAIQTIIDVSERILHQMMQPFFIEDRQLYLSASVGIALYPENALSGTDLLRNADT 1119 Query: 680 AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMYHAK G N+ + + ++ +R+ ++ +L LA++ E L + + I G Sbjct: 1120 AMYHAKAMGKNNFQFYAEEMNEKAMERLELENNLHLALQRDEFELTFQAQWDIKHNCICG 1179 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 +E L++W P G + +F+ I EE +I I ++L R I+ W++ + P + Sbjct: 1180 VETLLRWHRPDIGLVGPDKFIPIIEETGLIVPIGEWVLRRACEQIMDWQEAGYVIP-KLA 1238 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++++ D ++ + + ++ +T P I+L +ES++M + +R+ +L RK+G Sbjct: 1239 VNLSARQFKDAQMLDRICRIVDETGVDPELIELELTESILMDDIDRTLAVLNEARKMGFG 1298 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 L++DDFGT S LSYL P +K + S + ++ I R+I+ MA N+ +IA Sbjct: 1299 LSIDDFGTGYSSLSYLKQFPVSQLKIDKSFIQNLPYNQEDGQITRTIVAMANNLGLGVIA 1358 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + E + L +GC +Q + P+ + + Sbjct: 1359 EGVENESQRQFLKTIGCYQVQGYMYSHPVPADLFAQ 1394 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 4/146 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442 + + + S + D V+ D+ + + I +LG +S Sbjct: 566 IVSFIDINDRIKAELALKDSEQFWSNVIQTLPDTVYVNDLFAKQTRFSSRHIGELLGYSS 625 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRP 501 + I +W IH +D + R G + + R++ + + + R Sbjct: 626 EELE-EIEHWRQLIHPDDVSKSDAAISQLKTMRPGEVKETTARLKHKNGNWRVIRFRDCI 684 Query: 502 MSNSNGDIL-RYIGIANDITEQKKSL 526 S+ Y+G+A DITE++ + Sbjct: 685 FSSETQVPAQYYVGMARDITEEEDAK 710 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 9/154 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + + R L G DIV+ + + + I +LG S Sbjct: 697 VGMARDITEEEDAKIQLSFSERRYRLLANGISDIVFTLNKKLELSYISASINKMLGYDSD 756 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-------NQFHWMI 496 + + + L+ + ++ +VR D + Sbjct: 757 QVMREGLSLFLIT--ESVNKLIQALERDLQLALSISSFKDQVRTMDLDAQTFSGVPVILE 814 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 ++ + N +G I + D+T+++ Sbjct: 815 MQSSILRNESGAIEGILATCRDVTQRRFIEHEAR 848 >gi|198283533|ref|YP_002219854.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248054|gb|ACH83647.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidithiobacillus ferrooxidans ATCC 53993] Length = 1045 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 138/628 (21%), Positives = 278/628 (44%), Gaps = 16/628 (2%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY-----FSQG 399 + + N + PA +L++ + G+ ++ V Q Sbjct: 303 YPLVAGVGIPRSVLWADWWNSVEGPAAGAFGLLLLSIFGYGYLRRVGREREGERQSAEQT 362 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHI 458 ++ + ER + + GD V D + ++G A G + + Sbjct: 363 LWEEKERAEVTLHSIGDAVITTDTEGRVMDMNVVAEALMGYARTEAVGRPLEDVFRIVQE 422 Query: 459 NDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + + + + RL + D Q + P+ + G +L + + + Sbjct: 423 GSHAHLDNPVRRVLEEGQVVRLANHTMLLTKDGQERAIEDSAAPIRDRQGVLLGVVLVFH 482 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+TE+++ + + A D LTG+PNR F+DRL + ++L V ++D+D +K Sbjct: 483 DVTEKRRLIAELAHQATHDALTGLPNRVLFMDRLGHDRAQTLRHEHL-LAVGILDLDGFK 541 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 ++ND G A GD +L + +R+ ++ D LAR+ G+ FG++L + ++ D + Sbjct: 542 QVNDHFGHAAGDALLQEMAQRLRREMRSGDTLARMGGDEFGLLLSDVGSLEQVEDACTRL 601 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + + P L + EI +++SIG S+ ++L++A+LA+Y AK G + F Sbjct: 602 LEVLRAPFYLGDEEIPLSSSIGLTSYPLDDSLPEDLLRHADLALYAAKAAGRDRYHWFDW 661 Query: 698 SSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + ++ A++ L L Y P++ + + VG+EALI+ DHP+ G + + Sbjct: 662 PMDKLQQEAMEVRKMTENALDRGRLLLHYQPVVEIGNG-PVGVEALIRLDHPERGLLPPA 720 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F + + + I F+L +W Q P+ + +NI++ LLD ++ Sbjct: 721 AFAAALDAPRLTRHIGCFVLATALTQTQTWHRQG--MPLRVSVNISAHHLLDQRFLSDLR 778 Query: 816 ALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A + PS +++ +E+ + + +R L ++G+ + LDDFGT + L+YL Sbjct: 779 AALDAHPDLPPSAVEIEITETAPLLDFAGARETLLACNRLGVRIALDDFGTGNASLTYLQ 838 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P T+K + S + K AI+ ++ A+ + +IA+ + L + C Sbjct: 839 KLPAQTIKIDQSFVRDIINDPKDYAIVSGVVTSARLLGLEVIAEGVETAEHAAMLGHLQC 898 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLV 960 +Q +A P+ +I +++ PL+ Sbjct: 899 HCLQGYAIARPMAPEAIPGWIRQYKPLL 926 >gi|169828363|ref|YP_001698521.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41] gi|168992851|gb|ACA40391.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41] Length = 573 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 138/561 (24%), Positives = 245/561 (43%), Gaps = 37/561 (6%) Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSF 471 S IV D I + G L H + FR + + Sbjct: 28 NSSIIVAITDRTGKITFVNDHFCKISKYTREELVGQDHRLLNSGYHP--KSFFREMWRTI 85 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 E RA D +W+ I P + G +YI I DIT QK ++ I Sbjct: 86 --GNGDMWNGEVCNRAKDGSLYWVKTTIFPFLDERGKPYQYIAIRVDITAQKD-IKKITH 142 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 A+ D LTG+PNR+ RL S + + ID++++K IND LG +GD Sbjct: 143 IAYHDELTGLPNRRKLEQRLENEFHQSRRSGE-KFALFFIDVNRFKHINDGLGHIIGDMF 201 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 LV ++ R+ + + R + + F +IL N+ +I + A + + E Sbjct: 202 LVEMSNRLRNIDYTSNSFYRHNSDEFVMIL---NDVNRIEEMAKEIIGVFNESFVVDNYE 258 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 + SIG + + T E+LKNA++AMY AK GN +R + ++++ Sbjct: 259 FYASISIGISIFPDHANTVEELLKNADIAMYAAKSTRGNQYRLYRDNMDEANDKWLLLET 318 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L A++N L L Y P I L + I+G+EAL++W P+ G+I F+ AEE +I Sbjct: 319 KLHQALKNDLLELHYQPKIDLKTDTIIGMEALLRWYDPELGHIPPDRFIPFAEECGLIND 378 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I +++L + + W + + + + +NI+ + + E ++ +I++T P ++ Sbjct: 379 IGVWVLGKASAQAKLWNES-HNLRLRVAVNISPIHISTSGFVEMVKDVIAETGIDPQLLE 437 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 + +E ++ E + +LR +GI+++LDDFGT S L+YL P D +K + + + Sbjct: 438 IEITEMSMLDYTEDLINTINQLRALGITISLDDFGTGYSSLNYLKKFPVDVLKIDRAFVR 497 Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID-----------IKELTRMGCDYIQ 936 ++ A++ ++I +A + + L GC+Y+Q Sbjct: 498 DIVPEKSGIAMISAMISLAHALNL-----------QVVAEGVEEEAELNVLREHGCEYVQ 546 Query: 937 DSHVASPLGFNSILKLLKERF 957 + + PL ++ + F Sbjct: 547 GYYFSKPLSVEDFTNVIVQSF 567 >gi|228916381|ref|ZP_04079950.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843291|gb|EEM88370.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 885 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 159/727 (21%), Positives = 314/727 (43%), Gaps = 26/727 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 228 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 696 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 874 Query: 951 KLLKERF 957 LLK+ F Sbjct: 875 TLLKKGF 881 >gi|116253698|ref|YP_769536.1| sensory box GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258346|emb|CAK09448.1| putative sensory box GGDEF/EAL domain protein [Rhizobium leguminosarum bv. viciae 3841] Length = 717 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 141/599 (23%), Positives = 262/599 (43%), Gaps = 18/599 (3%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 + ++Q + + V V+ D+ Sbjct: 121 TFEVLTYGREVRFEGRAAILAIVQDRTEVNAARRQMSDTRSLLDSIVDNLPVGVFVKDME 180 Query: 425 RDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 D + I+G+ + + G + D FR + +E Sbjct: 181 ADGLYVLFNEACGDIVGMRAEHVVGQTD--RALFPPSQTDAFREQDRRAFEADTA-ISFE 237 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGI 541 + AD + R + G RY+ GI+ D+TE++ + A D+LTG+ Sbjct: 238 ETMLRADGVPRILRTVKRALPTPEGHAPRYLLGISQDVTEERTVEAKLAHLAMHDSLTGL 297 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR +F + + + D ++ ID+D +K IND G A GD +L ++ R+ + Sbjct: 298 PNRAAFSNHINQRAVEATADS--AIALLYIDVDHFKNINDSKGHAAGDALLCQVSERLLQ 355 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L + D++ARL G+ F ++L + + FA + K+++ +L VT SIG A Sbjct: 356 LAEEGDLVARLGGDEFAVVLE-LDEPERAGRFAQRLLKALSRAFDLDGAREHVTCSIGIA 414 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719 + ++++A+LA+Y AK G + + + + +L A+E + Sbjct: 415 LAPDHAGDADVLMRHADLALYAAKESGRSTYRFYETEMRLAAERRHVMTAELWEALEKRQ 474 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y PI++L ++ I G EALI+W HPK G ++ EF+ +AEE +I I +++ Sbjct: 475 FELHYQPIVQLDNDGIGGFEALIRWRHPKRGLVAPMEFIPLAEETGLIVPIGDWVIREAC 534 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 R W + I +N++ L + A + +T + R+++ +ESV + Sbjct: 535 RAAAGWPAH-----LRIAVNLSVSQFRHANLLSTVVAALDETGLNADRLEIEITESVFLT 589 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897 + ++S L L+++G+ + +DDFGT S LSYL PFD +K + S ++G +A Sbjct: 590 DADQSLPRLRALKELGLRIAIDDFGTGYSSLSYLRSCPFDKIKLDRSFVSGIETDAGNLA 649 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I+R+++ + T +A+ I E +++L G +Q + P+ + L+ R Sbjct: 650 IVRAVVGIGSGFNATTLAEGIETEEQLQKLRAEGFSEVQGYLLGRPMPQHEAEALIHGR 708 >gi|328880499|emb|CCA53738.1| 8-amino-7-oxononanoate synthase [Streptomyces venezuelae ATCC 10712] Length = 1075 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 132/539 (24%), Positives = 252/539 (46%), Gaps = 12/539 (2%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 +P T+ G + + G + D +L + ++++ Sbjct: 105 YASPSAETMFGRSL--LPGTPLT--DLVAPADTAAALRVLSDARTRASVDARDDWKLLHG 160 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 + + +R + + N + + D+TEQ+K + AF D+LTG+PNR L Sbjct: 161 GSADLEVEVRCSNLRDEN-TVHGLVLTLRDVTEQRKLERELTHRAFHDSLTGLPNRVLLL 219 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 +R+ L ++ ++ +D+D +K +ND +G +VGD++LV++ RR+ +L+ D Sbjct: 220 ERVERALLR-GRRESTLTCMLFVDLDDFKVVNDTMGHSVGDELLVAVARRLTSVLRLTDT 278 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 ARL G+ F +++ + A + +++ P +L + ++V+ S+G A+ Sbjct: 279 AARLGGDEFAVLIEGARETRDAEALAAEIVHTLSQPFHLTDGAVSVSTSVGVATV-LDSA 337 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHP 726 + E+L +A+LA+Y AK G F + + A+ + L Y P Sbjct: 338 HAEELLGHADLALYAAKAAGKKRWRLFHPEFHSKLVARHELQAGMDTAIADHAFALRYQP 397 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I+ + D GLEALI+W H + G + +F+ +AEE I + ++LE A DI W+ Sbjct: 398 IVEVRDGAPAGLEALIRWPHARRGMVPPDQFIALAEESGHIMPLGAWVLEHAALDIARWQ 457 Query: 787 DQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 P++ +N++++ D EG++ + + +P + L +E+V+M + R Sbjct: 458 RARPQRAPLYASVNVSARQFRDPGFLEGVRRALRSSGLAPGSLVLELTETVLMRRDAQIR 517 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903 + L+++G+S+ +DDFGT S LSYL P D +K + S + +++A++ I+ Sbjct: 518 TTMAALKELGVSIAIDDFGTGFSSLSYLREFPIDVLKVDKSFIDNITTDPQQVALVEGIV 577 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 +A + ++A+ I E L MGC Y Q A P+ + L P + Sbjct: 578 RIADVLGLQVVAEGIEHEEQRALLAEMGCRYGQGYLFARPMTAHQAESYLHRSAPAGER 636 >gi|86747577|ref|YP_484073.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86570605|gb|ABD05162.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 844 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 138/570 (24%), Positives = 259/570 (45%), Gaps = 14/570 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q +A Q + E Q L W+ + R +P++ +LGL + Sbjct: 264 ITQLEVARALLDQRTRALEEAQRL----GRIGTWNHRLDTGRTVWSPELYHLLGLDPAAF 319 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 Y + + I V + R+ D M I + Sbjct: 320 DPTYDGTKAYFLDDAAERMLEIQKRVVRTGTTE-AADIRILHGDGTPRDMAIICKAEI-R 377 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 +G ++ IG A D+T++K++ + A+ D LTG+ NR F +L L + R Sbjct: 378 DGKVVGLIGTAQDVTDRKEAERRLELLAYTDPLTGLANRALFKRKL-AGLFEQPISGDGR 436 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-E 624 +++ID+D++K++ND LG + GD +L+ + + + L +AR+ G+ F ++ Sbjct: 437 NALLLIDLDRFKEVNDSLGHSTGDSLLIHVASVLRQELDPQAFIARIGGDEFAVLTNGQC 496 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ A + +++P+ L E E + A+IG A T+ + +NA+LA+Y A Sbjct: 497 ASADDPIALADRLIAKLSVPVELAEGEACIGATIGVAILPEHGATAEKASRNADLALYMA 556 Query: 685 KHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G + F + + L AVE+ L Y P I L + G EAL+ Sbjct: 557 KEAGRGRAQLFEPIYAEAVDQRLDLGRRLRQAVESGGLTTHYQPQIDLKTGRVSGFEALL 616 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G IS SEF+ +AE +I + ++L R + +W D PP + +N++ Sbjct: 617 RWSHPERGPISPSEFIPVAESTGLIVQLGHWVLRDACRQMRAWLDAGL-PPRSMSVNVSP 675 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLD 861 + + + + A++++T + L +E++ + + ++ L L K+GI L LD Sbjct: 676 AQIWNGDFEAVVAAVLAETGLPAELLCLELTENLFVDHTKQKVSSTLAALSKLGIQLALD 735 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919 DFG+ S L YL +PF+ +K + S + G ++ +L II ++ + +++A+ Sbjct: 736 DFGSGYSSLGYLTRLPFNCLKIDRSFVDGIATVPEKRKLLGGIIALSHGLGMSVVAEGAE 795 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 ++ LT CD++Q + P+ + Sbjct: 796 LAAEVDLLTGFDCDFVQGYVFSPPITADQA 825 Score = 53.8 bits (128), Expect = 2e-04, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 6/132 (4%) Query: 407 QSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 A+ + W+ + +P+ A++ + P+ + RD Sbjct: 25 LRRAMRMARIGYWESYSAAATDFWISPEFASLFDFQTSKGSVPVDAMQQRRLADSRDVLH 84 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT----E 521 + R E ++ +D + ++ +++G + R G D+T Sbjct: 85 VHYAACWAEGR-PFAVETKLVTSDGRQLDCVVHGEAEFDASGRVQRVFGAVRDVTPETSA 143 Query: 522 QKKSLEGILCNA 533 ++ E A Sbjct: 144 HRRLAESEQRLA 155 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 56/186 (30%), Gaps = 33/186 (17%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR------DRVTTTPDIATI 437 F ++ V + + +R + V + D W+ D + + T+ Sbjct: 131 FGAVRDVTPETSAHRRLAESEQRLADFVGTASDWCWETGPDHRLLPHPDLIDGNAALQTV 190 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G W +++D + + +R + + +D + Sbjct: 191 -------ASGGKARWELSYAPDEQD-AMARHKADMEAQRPFRDFVYTSIGSDGSRISICT 242 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 +P+ +G L Y G A+DIT+ + + R R T L+ Sbjct: 243 SGKPIFADDGSFLGYRGTASDITQLEVA------------------RALLDQR-TRALEE 283 Query: 558 SATDDN 563 + Sbjct: 284 AQRLGR 289 >gi|124268042|ref|YP_001022046.1| sensory box/response regulator [Methylibium petroleiphilum PM1] gi|124260817|gb|ABM95811.1| sensory box/response regulator [Methylibium petroleiphilum PM1] Length = 754 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 138/597 (23%), Positives = 279/597 (46%), Gaps = 28/597 (4%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + ++++L + + + + A + +DW R + + + + GL Sbjct: 124 LLAGRLRYLLRSSRTRLELERSKSKLARAQDLARMGSFDWRRDRSGLLFSVEGLRVFGLG 183 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G G +R+ + + R ++L + R L +F V+ D + + + P Sbjct: 184 PGDHLG-MRSLIRMVPAEHRQGCLSLLRDTLA-RSTVLATDFPVQLIDGRQRVVHVEAEP 241 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N +G++ Y GI D+T+++ + + I A D LTG+PNR+ + R ++ + Sbjct: 242 EFNEHGNLTGYTGIVQDVTDRRVAEDKIRHLANFDALTGLPNRRQLIWRAERAMEQAKRL 301 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL------------ 609 ++ + +++ID+D++K IND LG GD++L+ ++RR+ ++ D + Sbjct: 302 NH-QVGLLLIDLDRFKVINDTLGHGAGDELLMEVSRRLRSCVRHSDQVVETGIDSVGLRA 360 Query: 610 -------ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 RL G+ F +L + A+ + + + PI + +E VTAS+G A Sbjct: 361 HRSLEAVGRLGGDEFVALLPEVDADQDAERVALRILEVMREPIFVGGQECFVTASVGIAL 420 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSEL 720 + + +++L+NA++AMY AK G N +R +++ ++ L A+E EL Sbjct: 421 FPRDGASVADVLRNADVAMYSAKAAGRNAASLYRPHLAGKGREKLELESALHKAIEREEL 480 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P I + +VG EAL++W + +F+ +AEE +I ++ + + R Sbjct: 481 VLHYQPKIDVRTARMVGAEALMRWKR-NGVLVPPGDFIPLAEETGLIVPMSEWAIREATR 539 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 W+ I +N+ S+ +L +Q + + S I+L +E+ +M + Sbjct: 540 QARLWQQHHG-IDTSIAVNLPSRLFERTDLVTHIQQAAAAHGVTHSCIELEITETGLMKD 598 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAI 898 + L RL +IG+ +++DDFGT S L+YL +P +K + S + + A+ Sbjct: 599 LQNVIPALHRLNEIGVEISIDDFGTGYSSLAYLTTLPISELKIDRSFVRDLGVTLQSSAV 658 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +II +A+++ +IA+ + ++ L R+GC +Q + L + + L + Sbjct: 659 VTAIIALARSLGIRVIAEGVENLRQMEVLHRLGCSTMQGFLFSKALPPEDLEQWLAQ 715 >gi|213968212|ref|ZP_03396357.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] gi|301383782|ref|ZP_07232200.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] gi|302060775|ref|ZP_07252316.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato K40] gi|302131874|ref|ZP_07257864.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927192|gb|EEB60742.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] Length = 730 Score = 501 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 142/571 (24%), Positives = 263/571 (46%), Gaps = 26/571 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 154 AQAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAREVLGRTAHEIG 213 Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W + R + + + E R + + + + ++ +N Sbjct: 214 IWTDTV-------QREFMIDELRQKGRMHHREMNGRDKNGAPLVLDVSVEFITLNN--TA 264 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + A DI + K + I A+ D LTG+PNR +DRL+ + L NLR ++ Sbjct: 265 CLLMNARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLF 323 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--- 627 +D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + S Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARLGGDEFVVLICGLDGSLEH 383 Query: 628 --LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ A +R +A P+ L + VT S+G +T +++LK A++A+Y AK Sbjct: 384 VTHQVRVLADNLRVLLAEPMFLDGHRLQVTPSVGIVLIPDDGLTPADLLKRADIALYRAK 443 Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + F VS + S R+ ++ DL LA+ +E +L + + +I G EAL++ Sbjct: 444 DSGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRTNQITGAEALLR 503 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIA 801 W HP++G ++ +F+ I EE MI + +L+ + Q + +N++ Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNVS 563 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + ++ E ++ + + + +KL +E +V+ N + + L + LR +G+ +D Sbjct: 564 PRQFRQSDFVERVEHSLKQHHLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAMD 623 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 624 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGVE 683 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + L R+GC Q + PL Sbjct: 684 TPEQLAFLERVGCYNYQGYLFSEPLPGPEFE 714 Score = 94.2 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 8/151 (5%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + R LA+ + WD DI R+ + + + G+ + R + + Sbjct: 27 ERILEETRARLELALDLAQMGTWDLDITHSRLQASARASFLHGMDAQPFDDDSRLFFDRL 86 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +RD R + + R+ LQ +R + D + R R + G+ ++ G Sbjct: 87 PAEERDRVRAAYTAALESRQDCLQMTYRFQMKDGTSRLIESRARIYRDEIGNPVKLAGTL 146 Query: 517 NDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+Q ++ E AF D++T Sbjct: 147 LDITQQCAQAALEASEEKFAKAFHSSPDSIT 177 >gi|229146087|ref|ZP_04274464.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|228637427|gb|EEK93880.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] Length = 785 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 163/760 (21%), Positives = 310/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 38 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 94 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 153 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 207 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 267 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G D+ + LQ + + W + Sbjct: 268 GKESAVLIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 324 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ E I AF D +T I NR F L + + Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 383 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 442 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 443 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 561 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W + + Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 620 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 621 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 680 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 740 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 780 >gi|222081981|ref|YP_002541346.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] gi|221726660|gb|ACM29749.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] Length = 691 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 150/596 (25%), Positives = 258/596 (43%), Gaps = 18/596 (3%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 + ++Q + + V V+ D+ Sbjct: 94 TFEVLTYGREIRFDGKAAILAIVQDRTEVNAARRQVTDTRSLLDSIVDNLPVGVFVKDMA 153 Query: 425 RDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 D A +G + + G H FR + + +E Sbjct: 154 EDGRYILFNEACAAAIGRPAKDVVGKNDQ--AVFHAEQIAAFRQQDERTFETPS-TVSFE 210 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGI 541 VR D + R + G+ RY+ GI+ D+TE++ + A D+LTG+ Sbjct: 211 ETVRGMDGVTRILRTAKRALPAPKGEAPRYLLGISQDVTEERGVEAKLAHLAMHDSLTGL 270 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR F + + + + ++ IDID +K IND G A GD +L + +R+ Sbjct: 271 PNRAFFSESIVRQVASA--TPETPIALLYIDIDHFKHINDSKGHAAGDTLLRQVAQRLLR 328 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L + D +ARL G+ F ++L ++ + FA + S+A P +L VT SIG A Sbjct: 329 LAEKSDFVARLGGDEFALVLR-MTDADRAQRFADLLLLSLAAPFDLDGVREHVTCSIGIA 387 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSE 719 + ++++A+LA+Y AK G + ++ R + +L A++N E Sbjct: 388 MAPDHADDADVLMRDADLALYAAKGSGRSTYRFYQTEMRLEAERRHQLTVELREALQNGE 447 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y PIIRL ++ + G EALI+W HP+ G I+ EF+ +AEE MI I ++L Sbjct: 448 FELYYQPIIRLDNDGLSGFEALIRWRHPERGLIAPMEFIPVAEETGMIVPIGEWVLREAC 507 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 R W + I +N++ L + +++ +T P R+++ +ESV++ Sbjct: 508 RTAARWPSH-----LKIAVNLSVYQFRHAGLLATVVSVLDETGLRPERLEIEITESVLLS 562 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897 E+S LL L+++GI + +DDFGT S LSYL FD +K + S + G +A Sbjct: 563 EVEQSLHLLRALKELGIRIAIDDFGTGYSSLSYLRSFAFDKIKLDRSFVAGIETDPGNLA 622 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I+R+++ +A +A+ I E + +L G +Q + P+ L+ Sbjct: 623 IVRAVVGIASGFNAMTLAEGIETEEQLGKLRAEGYSEVQGFLLGRPMPRQDAEALI 678 >gi|172039563|ref|YP_001806064.1| hypothetical protein cce_4650 [Cyanothece sp. ATCC 51142] gi|171701017|gb|ACB53998.1| hypothetical protein cce_4650 [Cyanothece sp. ATCC 51142] Length = 709 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 128/559 (22%), Positives = 254/559 (45%), Gaps = 28/559 (5%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 +D ++ + + S + + + D + +H H Sbjct: 169 LADFQKFASLIELSPNPILEIDYQGKLIYANSSAK---------LHFRDLKQTQMNHP-- 217 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R + ++ + L E + Q I + ++R D+T Sbjct: 218 --IVRGLFNNNESRQGNLLVREITI----GQVV-FEQHIHYLPQE--KLIRC--YLFDVT 266 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 +++++ E + AF D LTG+PNR + L+ L + + +L ++++D+D +K IN Sbjct: 267 QRREAEEILKYKAFHDELTGLPNRAFLHEHLSLALGNAQRNKSL-MAILLLDVDGFKNIN 325 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG ++GD +L +R+ ++ D++ R G+ F I+L + A FA + + Sbjct: 326 DTLGHSIGDLILKCFAKRLQSQVRQGDLVCRWGGDEFIILLSRIKEPKEAAQFAERLLEV 385 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 PI + I + +SIG + +LK+A+LA+Y K+ G N+ + + Sbjct: 386 FKHPITVEGNLIYLKSSIGITIYPEDGQDQETLLKSADLALYKTKNSGRNNYQFYHSKMA 445 Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++ L AVE E YL Y P + + +I G+EALI+W+ G IS +F+ Sbjct: 446 SEMKAEFELENALHKAVEQEEFYLHYQPQVNIRTGKIEGIEALIRWESSSLGPISPQKFI 505 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AE+ +I+ I +++++ + +W++ + I IN++ + L + + ++ Sbjct: 506 PLAEKTGLIQPIGEWVIKQACQQAKTWQNMGLEF-LKIAINLSPQQFQQFNLIDRINEIL 564 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 T P ++L +ES +M N + +R L R + IS+++DDFGT S L+YL PF Sbjct: 565 HSTQLPPQFLELEVTESSLMQNIDLTRETLKVFRDMEISISMDDFGTGHSSLAYLKQFPF 624 Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 T+K + S + AI+ +I+ +++ + ++A+ I + L + C+ +Q Sbjct: 625 QTLKIDRSFIKDLHNNTQEQAIVAAIMTLSRGLNLRVVAEGIENTEQLNILKTLECEQMQ 684 Query: 937 DSHVASPLGFNSILKLLKE 955 + PL ++ L Sbjct: 685 GYFFSRPLSAQKMMFFLSN 703 >gi|228955813|ref|ZP_04117792.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803860|gb|EEM50500.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 620 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 145/588 (24%), Positives = 261/588 (44%), Gaps = 11/588 (1%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L L + + TV Q S + + ER D + D + Sbjct: 35 LTKTLKVFNNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNI 94 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 + +LG S + G D+ + LQ + + Sbjct: 95 NQAGSMLLGKESAVLIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKD 152 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 W + I P+ G + DIT K+ E I AF D +T I NR F Sbjct: 153 ILFWY-VTIVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQE 210 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L + + + + ++ ID++++K IND LG ++GD VL + +R L LA Sbjct: 211 LDRSIKRAQKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLA 269 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 R+ G+ F II+ ++ ++ D + + P + + ++ SIG A + I + Sbjct: 270 RIGGDEFAIIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINT 328 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPII 728 + +L++A++AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I Sbjct: 329 TTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQI 388 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 +++G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W Sbjct: 389 DSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA 448 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + + IN+++ + + + + + I + + I L +E + M + + + L Sbjct: 449 -GFSNLKMGINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKL 507 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 L+ G+ L++DDFGT S L+YL P DT+K + + I+++II +A Sbjct: 508 KALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLA 567 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + +IA+ + + + L R C IQ + + P+ + + L Sbjct: 568 HTLNMKVIAEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 615 >gi|237653319|ref|YP_002889633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Thauera sp. MZ1T] gi|237624566|gb|ACR01256.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Thauera sp. MZ1T] Length = 1251 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 136/586 (23%), Positives = 260/586 (44%), Gaps = 11/586 (1%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ + V+ G+ + R V ++++ D A I Sbjct: 662 LMTLVGNAFSGVIERKRAHDGLQASEARYRSVVESVREVIFQLDGRGRWTFLNKAWADIT 721 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G A G R++L ++H + RD +++ + + R R A F W+ + Sbjct: 722 GYALADSLG--RHFLAHVHADHRDQHGEMIEQVLAGELESCTHAARYRCAGGGFRWLEMS 779 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 R ++ G G DIT+QK+ + A D LTG+PNR DR+ + + Sbjct: 780 ARRAFDAQGRPAGLSGTLTDITQQKEHESRLEYIAHYDALTGLPNRVLLSDRMQRGMAQA 839 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ID+D +K IND LG GD +L + R+ L+ D ++RL G+ F Sbjct: 840 RRRGQ-QLALAYIDLDGFKAINDTLGHQAGDQLLAVVAARMKAALREGDSISRLGGDEFV 898 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNA 677 +L+ + + +++ + L +E+ V+ASIG + ++ + ++L+ A Sbjct: 899 ALLLDLPDVEACELLVRRLLGAVSQAVQLAGQEVKVSASIGLTLYPQAEEVDADQLLRQA 958 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LAMY AK G N F + RS R + A+ E L+Y P + + + Sbjct: 959 DLAMYQAKLAGKNRYHLFDTAHDRSQRGRHQTLAAIRGALRTGEFRLLYQPKVNMRSGAV 1018 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EALI+W HP+ G + F+ + + + I +++E+ + +W+ + Sbjct: 1019 VGAEALIRWRHPRQGELEPGGFLPVVADHPLAVEIGDWVIEQALAQVAAWQHAGLF--LP 1076 Query: 796 ILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N+ ++ L + +QA +++ P ++L E+ + + + ++ +I Sbjct: 1077 VSVNVGARHLQAADFMPRLQAALARHPDLGPGALELEVLETSALESIAQVTRIVEACARI 1136 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+S LDDFGT S L+YL +P +K + + G + +AIL++I+ +A + Sbjct: 1137 GVSFALDDFGTGYSSLAYLKRLPAARLKIDQLFVRGMVEDAEDLAILKAIMGLADAFKRE 1196 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 +IA+ + L ++GC+ Q +A P+ I + P Sbjct: 1197 VIAEGVEEVEHGSLLLQLGCEVAQGYGIARPMPAEEIPAWVANWSP 1242 Score = 101 bits (251), Expect = 9e-19, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 7/186 (3%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 I +GL A D+ +I + ++I Q A + + Sbjct: 177 LIGMVGLANAAQGY-DHALIVELEPMLVTCASMIIALRTEQDRKAAR---RALEESERHF 232 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 ++W D G G W+ +H +D + Sbjct: 233 RELANSKSALIWTSDADGGCNYFNDTWLQFTGRTLEQSQGT--GWVADVHADDLEGCLDA 290 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 RR + E+R+R A + W+ P +++G + YIG DITE+K+ Sbjct: 291 WQRAFA-RRESFRMEYRLRHAAGGYRWISDEGNPRRDADGAFVGYIGYCYDITERKRGDL 349 Query: 528 GILCNA 533 + A Sbjct: 350 ALDALA 355 >gi|46578838|ref|YP_009646.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448250|gb|AAS94905.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris str. Hildenborough] Length = 1072 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 148/554 (26%), Positives = 249/554 (44%), Gaps = 11/554 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465 L + + + D + P TI G G R H DR + Sbjct: 507 FELVFRNALEGILITDASGAILAVNPAFTTITGWNERDAVGRNPRILKSNRH--DRGFYE 564 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + S + RG + E R + + + + I + + +G Y+ + +DI++ K Sbjct: 565 RLWHSL--HERGAWEGEIWNRRINGENYPEWLSISAIRDESGATTNYVALFHDISDLKAK 622 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 I D LTG+PNR L+RL L L ++ IDID +K IND LG Sbjct: 623 EAQIRYQGMHDALTGLPNRALLLERLAGELKEGQGTGRL-CGLLYIDIDNFKTINDSLGH 681 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD + + + L++ D L+RL G+ + I++ + ++ A + + PI Sbjct: 682 EAGDKFIAEVAEHLTLLIRPEDTLSRLGGDEYVILVANPGEEREVVLVAERILHHFSQPI 741 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703 LL+RE+ V SIG A + E+L NA+LAMY AK +G N E F + Sbjct: 742 ALLDRELHVGLSIGIAIHPADGKGPDELLTNADLAMYRAKAQGKNTYERFSPHLHDRIRS 801 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R+ ++ L A+ + E+ + P + L IVG EAL +W P IS EF+ +AE+ Sbjct: 802 RMELEGRLRHALRHGEIVPHFQPRVDLATGRIVGAEALARWTLPDGTRISPGEFIPVAED 861 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 L +I + ML + D+ P I + +N++ +L + A + T Sbjct: 862 LGLIFDLGEHMLRSSLAFTRALMDEGL-PDITMAVNLSLVQCRHADLVGRVLAALRDTGV 920 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P R++L +ES +M + R+ L RL +GI+L +DDFGT S L +L ++P T+K Sbjct: 921 PPERLELEITESAIMSDVTRTLRRLDRLAALGITLAVDDFGTGYSSLYHLKHMPLHTLKI 980 Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + I +++ MA+N++ +IA+ + + L GC +Q + Sbjct: 981 DQSFVRDLPHVAGSRTIALTMLAMARNLDLDVIAEGVETGAQMHFLRDHGCRVVQGFLFS 1040 Query: 942 SPLGFNSILKLLKE 955 + + + LL+ Sbjct: 1041 PAVPGDRLFDLLRR 1054 >gi|148546431|ref|YP_001266533.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148510489|gb|ABQ77349.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] Length = 861 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 141/564 (25%), Positives = 263/564 (46%), Gaps = 15/564 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 +Q + + +R + D +W+ D + + A + G G N L Sbjct: 299 NQALEASEQRFRAVAESASDWIWETDRHQRLTYLSQRFANVTGYPVDGWLGHPLNQLLAC 358 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + L + + L+ +R + Q + I R + +G + + G A Sbjct: 359 DTTPLSPWLDALATADPQQLANLRCTYR--DQNGQNRYCRISARAIW-RDGKAIGFRGTA 415 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT++ + I + D LTG+ NR L L + L ++D+D + Sbjct: 416 SDITDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGSDSPPLTLL--LLDLDNF 473 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG A GD VL + R+ + + D++ARL G+ F ++L +NS +I F Sbjct: 474 KPINDSLGHAAGDAVLQEVATRLRDTTRDGDLVARLGGDEFILVLSGMDNSSEIDRFCAR 533 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695 + + PI + + + ASIG A + + E+++ A++A+Y AK G N F Sbjct: 534 LIGLLQQPIVFESQPLHIGASIGVAQTRNQGFDAGELIRCADIALYQAKADGKNTWRYFV 593 Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ R ++ DL A+ N E L Y P RL D IV +EAL++W HP+ G + Sbjct: 594 AEMNQQIQYRRQLENDLRRALRNEEFELHYQPRYRLDDLRIVAVEALVRWRHPQEGLLGP 653 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I A+ ++L R W + + +N++ L +++ + Sbjct: 654 DTFIPLAEQSDIIVALGRWVLREACRTAHDWPA-----DVLVSVNLSPAQFLRSDVVADV 708 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ T + R++L +E+V++ + E + + L+++G+ L +DDFGT S L YL Sbjct: 709 REILLDTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLR 768 Query: 875 YIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PFD++K + ++G A++++II + + + T+ A+ + E +K L Sbjct: 769 TYPFDSIKIDKRFISGLNNNGGSDRAVVQAIINLGEAMGLTVTAEGVESEHQLKALENDR 828 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C +Q +++ PL + LL + Sbjct: 829 CHEVQGYYLSMPLDSAGLAALLHQ 852 >gi|228928797|ref|ZP_04091831.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935047|ref|ZP_04097877.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824617|gb|EEM70419.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830882|gb|EEM76485.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 885 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 228 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 696 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 874 Query: 951 KLLKE 955 LLK+ Sbjct: 875 TLLKK 879 >gi|218904877|ref|YP_002452711.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|218540040|gb|ACK92438.1| sensory box/GGDEF family protein [Bacillus cereus AH820] Length = 908 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 897 Query: 951 KLLKE 955 LLK+ Sbjct: 898 TLLKK 902 >gi|303249050|ref|ZP_07335294.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio fructosovorans JJ] gi|302489573|gb|EFL49514.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio fructosovorans JJ] Length = 809 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 151/638 (23%), Positives = 282/638 (44%), Gaps = 14/638 (2%) Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381 T + + + + + RL P V + L Sbjct: 172 GTLPGVAFATLFAPEDRPRLDRLLPAALGGETARARVRGRLPGGGTIPLAVTCVPLPAGE 231 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 +++ ++ D E + + + D + I GL Sbjct: 232 GPRFLLEASPTRAPGARPDQPDLE-----LERCPEGFFVLDAEDRLLAANAAAWGIFGLC 286 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + P + + + V ++ E V + D +++ + P Sbjct: 287 A---PPPHGALVTKTLPEELATALSRDAGRVIAWNEPVRKEVTV-SIDGADKTLLLALFP 342 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 M + G L G+ DIT++K+ + AF D LTG+PNR LDR+ ++ S Sbjct: 343 MGHDEGSRLAG-GLVTDITDRKRLESQLAHMAFHDPLTGLPNRSLCLDRIRQAIERSKRR 401 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 DN + V+ +D+D++K IND LG +GD +L +++R+ E ++ D ++RL G+ F ++L Sbjct: 402 DNYQYAVIFLDLDRFKVINDSLGHHMGDRLLEGVSKRLRECVRGLDTVSRLGGDEFVVLL 461 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + +I +R ++ + +I VT S+G E+L+NA +A+ Sbjct: 462 EETGSYREIVRIVKRIRSAVGEVFQFCDHDIHVTCSMGIVISPCLYDKPEELLRNANIAL 521 Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 + AK G N + F + ++ L LA++ E +L Y PI+ L D + G E Sbjct: 522 HRAKGEGRNRFKVFNTRMLEDAIRLMDLESALRLALDRGEFFLDYQPILSLSDRSLQGFE 581 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILI 798 AL++W P G S +F+ +AE+ +I + L++LE R ++ W+ + + + Sbjct: 582 ALVRWRRPGKGVASPKDFIPVAEDTGLIVPLGLWVLEEACRTMVRWQTDFPQVLAMSMSV 641 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+++K L L E ++ ++ T P +KL +E+V+M NPE S L L RL+ +G+ L Sbjct: 642 NLSAKQLTQPTLVEDVERILRATGLDPHALKLEITETVIMDNPEVSILRLKRLKALGVRL 701 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKD 917 ++DDFGT S LSYL P DT+K + + ++ I+ +++ +A ++ ++A+ Sbjct: 702 SVDDFGTGYSSLSYLQRFPIDTLKVDRTFVSEIEANENRKIVGAVVALAHSLGLDVVAEG 761 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + E LT C+ Q + P+ + ++L Sbjct: 762 VELEAQSAVLTDFACEAGQGFLFSRPIAREDVERMLDS 799 >gi|58616411|ref|YP_195541.1| sensory box protein [Azoarcus sp. EbN1] gi|56315873|emb|CAI10517.1| sensory box protein [Aromatoleum aromaticum EbN1] Length = 728 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 123/578 (21%), Positives = 241/578 (41%), Gaps = 13/578 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448 V + + S + + D + I G + G Sbjct: 137 VFQDITERKRTDEALRLWASVFANSREGIAITDRNGIILDVNEAFVRITGYGREEVIGQN 196 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 R H D + + +S Y+ E R D + + + I + + + Sbjct: 197 PRILQSGRH--DSAFYAGMWESL--YKASNWCGEIWNRRKDGEIYPQWLNISAVRDEESE 252 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + YI + D+++ K + + + A+ D LTG+ NR D + + S ++ + Sbjct: 253 VSHYISVFMDLSQIKSNEKRLELLAYFDPLTGLANRTLLADHMRMAIARSRR-ESTLFAL 311 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +D+D +K +ND G VGD L + +RI +++ D +ARL G+ F I++ Sbjct: 312 GYLDLDGFKPVNDQFGHEVGDQFLQEIAKRIKSVVRGDDTVARLGGDEFVILVQGLRKPE 371 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + + + PI L +T T SIG + + +L++A+ AMY AK G Sbjct: 372 ECHHTFERLLAKLEEPIQLNGHHLTATGSIGVTLFPCDEADPDTLLRHADHAMYQAKEAG 431 Query: 689 GNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N + + + + E + A+ E L Y P + L ++G+EALI+W Sbjct: 432 KNRIHLYDTEFDVEVRVQRELVERIEHALSEREFLLFYQPKVDLRRGRVIGVEALIRWQD 491 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P G + S F+ + + + I+ ++L ++ W + I +N++ L Sbjct: 492 PDRGLLPPSAFLPQIQNHLVSQKIDQWVLSEAVAQLMLWHAIGLD--LSISVNVSGLSLQ 549 Query: 807 DNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 ++ + L++ + SR+++ E+V + + E ++ R + GI LDDFGT Sbjct: 550 THDFMNTLAKLLAAHPEINRSRLEIEVLETVALDDIEHISGIISRRQAEGIRFALDDFGT 609 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 + L YL ++P D +K + S + E+ I+ +I +++ + ++A+ + Sbjct: 610 GYASLRYLKHLPADVLKIDQSFVRDMLNDEEDRVIVEGVIGLSRAFKREVVAEGVETLEH 669 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 L +GCD+ Q +A P+ + L L+ P + Sbjct: 670 YLCLMELGCDFAQGFGIARPMPASEFLPWLENWLPPTE 707 Score = 95.0 bits (235), Expect = 6e-17, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 2/135 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +D E L V D + D P + ILG + + G L + Sbjct: 23 EMQADEEMYRLIVNEISDGILVLDADFVARFANPAMLRILGYSPDELDGVWAGDLVWSEA 82 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D F + G YE R R D W I + +G + + D Sbjct: 83 EDLGRFAEETEKRRRGESG--NYELRWRRKDGSARWSRISATARFDPDGQFDGSLIVFQD 140 Query: 519 ITEQKKSLEGILCNA 533 ITE+K++ E + A Sbjct: 141 ITERKRTDEALRLWA 155 >gi|301055239|ref|YP_003793450.1| sensory box/GGDEF family protein [Bacillus anthracis CI] gi|300377408|gb|ADK06312.1| sensory box/GGDEF family [Bacillus cereus biovar anthracis str. CI] Length = 908 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 157/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLH--WNRWHAKVGYITFSGIACIAILFCMS- 300 + +SS+ +++ YL+ + + + + + + Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTEAITLLRLLYRIPILLIAIAGSIS 250 Query: 301 ------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 Y +V I + L +I +K + LI + FI+ + Sbjct: 251 ENRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND G + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTHGHSAGDYILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 659 NAIQNEELFLLYQPQVDSQSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 897 Query: 951 KLLKE 955 LLK+ Sbjct: 898 TLLKK 902 >gi|54309271|ref|YP_130291.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9] gi|46913703|emb|CAG20489.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9] Length = 1053 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 140/548 (25%), Positives = 250/548 (45%), Gaps = 9/548 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 S AV S + V D G+ S G L + Sbjct: 494 LSHAVEQSDNTVLITDKNGIIEYVNHSFEAFTGITSAQAVGRDSRTLMKGSNETTSEIKH 553 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I R + + +DN + I P+ N G I YI DITE+ Sbjct: 554 IRQQLKAGRT--INRVITRKKSDNTVCYEDETISPIRNDTGKISHYISTGKDITERVLFE 611 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + A D LT +PNR L + + + V ID+D +KKIND LG Sbjct: 612 SKLHKLAHYDLLTELPNRLLLLQHIEQAITNAEEM-KTSVVVFNIDLDYFKKINDSLGHD 670 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD VL+++ +RI L+ D+LARL G+ F I++ S+ +S IA A + +I ++ Sbjct: 671 VGDKVLITIAKRITRSLRDEDVLARLGGDEFAILIQSDTSSQSIATLAERIINNICASLS 730 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + E+ +++TAS+G A + + + S +LKN+++A+YHAK +G N F R Sbjct: 731 IEEKSLSITASMGIAVYPENSVDSDALLKNSDIALYHAKDQGRNRYCFFTPQMGIESVQR 790 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + ++ DL ++ + Y P + ++ G+EAL++W + + S + I E Sbjct: 791 LQLESDLRKSLGTDQYTFFYQPKVNAKTHKVCGIEALLRWKNEEGQIQSPLGIIPILENS 850 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + ++ + + W+ + +NI+++ LL +++ + + ++ + + Sbjct: 851 GLIVNVGETLINQACEQLAIWQSNGLD--LHFALNISARQLLHSDIVDTVYKAVTMSGCN 908 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P ++L +ESVVM + + + L +L +G+ + +DDFGT S L+YL P +K + Sbjct: 909 PHYLELEITESVVMADVKLAFDKLIKLEALGVKIAIDDFGTGYSSLAYLSRFPIHILKVD 968 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + + + I RSII +A N+ ++A+ + E IK LT +G + Q + Sbjct: 969 REFVQDLPMNKDSVTITRSIIELAHNLGMLVVAEGVENEGQIKFLTGIGVEEFQGYYFGK 1028 Query: 943 PLGFNSIL 950 P+ + Sbjct: 1029 PMPIDEFE 1036 Score = 39.2 bits (90), Expect = 3.6, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 5/118 (4%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG----YFSQG 399 W +I + + II+ A G LV+ +I + H+ Q Sbjct: 301 WTVISRVNMASLVTELSFSQQRIIKFATFGILVMALIAGCIVLAWHLFQQLIHEKKLKQE 360 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 I + +R + + + D + + + + + + +N +H Sbjct: 361 IEDNAQRYASVLKNAPDGLMTLNNRLEITALNHSAERVFNIT-DTAEAIGKNIYDIVH 417 >gi|54297266|ref|YP_123635.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris] gi|53751051|emb|CAH12462.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris] Length = 792 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 168/787 (21%), Positives = 316/787 (40%), Gaps = 42/787 (5%) Query: 182 KDTVNSFTLYR---GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238 + L+ I G A + I + V +LI +V F Sbjct: 23 IEKEQVKLLFDQVGMAISGEALAVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSMLLF 82 Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFC 298 + +SS L + + I + Sbjct: 83 YYNKQPTLFSTEKWLFLFNLGVVSSGLAWGFASSIMIPATS-TLHQIFVVFLITGVTAAA 141 Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 S Y P+ + +V + F I+ KG V L+ + I M Sbjct: 142 NSLYSPVRLSY-----FLFLVTAFVPFTIWLFSKGQ---VYLLLGFCGIIY---MGIMLF 190 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 N I+ L + + +++ + ++ + + + D + Sbjct: 191 ISYYSNRILINTLKMRFKISNLNSTKDILEKKVVDR--TKELEKILALTKSTLESTADGI 248 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFV 472 D+ + + G++ G + + + F + Sbjct: 249 LVVDLKGNIEFCNQQFLKMWGISPGFIDSHNDTETIQYVLNQLKNPEE---FLKQIKELY 305 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + E D + R + I+ + D+T + Sbjct: 306 NNPKQESFDELHF--KDGKIF---ERYSQPHWLDNKIVGRVWSFRDVT----LSTRLAYQ 356 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D+LTG+PNR + DRL ++ N +V+ +DID +K IND LG GD +L Sbjct: 357 ANHDSLTGLPNRTALYDRLDHAINYCKRL-NTSLSVLFLDIDNFKLINDSLGHDAGDILL 415 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 +RR+ ++ D +AR G+ F ++L+ + A + K++A PI L +E+ Sbjct: 416 YEFSRRLKGCIRHSDTVARFGGDEFVLLLM-TTEPKDVILVAQNILKAVAQPIKLPTQEV 474 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--ED 710 VT SIG + + I +S +LKN++ AMY AK G N+ + + S + ++ Sbjct: 475 IVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQTQ 534 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 + A++N+E +++Y PI L E+VG EALI+W HP G +S EF+ IAEE +I + Sbjct: 535 IHNAIKNNEFFILYQPIYNLRSGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLINQV 594 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L +W+ +P I I IN++ + L ++ E ++++ ++ P +++ Sbjct: 595 GEWVLRNACIQNKTWQ-LMGLPHISISINVSWRQLKNSNFIEIAESVLKESRLDPQYLEI 653 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 F+ES ++ L ++ ++GI + +DDFGT S LSYL PF+ +K + S + Sbjct: 654 EFTESTMIQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFNKLKIDRSFIQN 713 Query: 891 --STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + +I+ +II MA ++E ++A+ + + + GCD +Q P+ + Sbjct: 714 CTTNPNDASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADK 773 Query: 949 ILKLLKE 955 +KL+++ Sbjct: 774 FVKLMQK 780 >gi|170727095|ref|YP_001761121.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908] gi|169812442|gb|ACA87026.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella woodyi ATCC 51908] Length = 637 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 143/557 (25%), Positives = 262/557 (47%), Gaps = 11/557 (1%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ER LA+ + VW+ +I D + + + G + + +N L +IH D+ Sbjct: 77 NAKERFQLAMRATSAGVWERNIDEDAWYFSDRLIALFGYSREELLFGFKN-LSFIHNEDK 135 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 +L + + +E RV ++ ++ W I + + N G+++R G +DI E Sbjct: 136 KPLLHVLKNHFRNGKA-FDFECRVLTSEGRYKWFWIVGQAVWNDKGEVVRIAGSFSDIDE 194 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + ++ + + A D+LT +PNR + +L L L+ + + V++ID++ +K++ND Sbjct: 195 RVENSKLVEKMAHYDHLTMVPNRVLYNQKLDIALSLADKEQS-HLAVILIDLNDFKQVND 253 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG + GD +L + + + DI+ARL G+ F I+L + N + + + I Sbjct: 254 TLGHSAGDHLLQHIANQFKLNISESDIVARLGGDEFSIVLTNIANRQAVVTKCEQVLEII 313 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR----GGNHVESFRV 697 + P + I S+G A + +T E++ NA+LAMY AK G Sbjct: 314 SRPFYYQKNLIIPKISMGIALYPEYGMTRDELMVNADLAMYKAKGEKHMGSGFQFCEQEH 373 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + +R + +LC A+ +E ++ + PII L + E+ EALI+W H G + +F Sbjct: 374 INKNMERTELSSELCEAITENEFFMHFQPIIDLSNGEVTFAEALIRWKHTNKGVLLPEKF 433 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + IAE+ +I + +E +A+ I + + INI+ L E ++ + Sbjct: 434 ISIAEDSGLITRLGKLSIELVAKQIDRMMAAKRLQKLT--INISPSHFLSQSFMEDLKEI 491 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +S S I + +E V + N E ++ + L +GI+++LDDFGT S YL +P Sbjct: 492 LSVYPKMSSFITIEITEVVFLLNMEVAKKTVIELHDMGITISLDDFGTGYSSFKYLQQLP 551 Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + I +II +A ++E +IA+ + + L CD+ Sbjct: 552 IDVIKLDCSFIAELDIDPSHRNIASTIIELAHSLEIKVIAEGVETNSQLVFLQDHHCDFA 611 Query: 936 QDSHVASPLGFNSILKL 952 Q S+ PL L + Sbjct: 612 QGSYFFKPLSVIDFLHM 628 >gi|71736110|ref|YP_274174.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556663|gb|AAZ35874.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 729 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 149/577 (25%), Positives = 267/577 (46%), Gaps = 26/577 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 155 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 214 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + ++D R + + D +++ I + + Sbjct: 215 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 265 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + A DI + K + + A+ D LTG+PN +DRL+ + L NLR ++ + Sbjct: 266 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNCALLMDRLSQQVSLLQ-HQNLRGALLFL 324 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----- 626 D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 384 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 ++ A +R+ +A P+ L + VT SIG + +++LK A++A+Y AK Sbjct: 385 IQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 444 Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F VS + S R+ ++ DL LA+ +E L + I D+ I G EAL++W Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 504 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802 +HP++G +S +F+ I EE MI + +L+ + Q + +NI+ Sbjct: 505 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 564 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + N+ E +Q + + S +KL +E +V+ N + + L + L+++G+S +DD Sbjct: 565 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 624 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 684 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + L R+GC Q + PL LL +R Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 721 Score = 92.7 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + +R LA+ + WD DI +R+ + + + G+A+ R + Sbjct: 26 AERVLQQTRDRLELALELAHMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 85 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + +R R + + + ++ LQ +R + + + R R N +G ++ G Sbjct: 86 LPAEERRRMRAVYAAALENQQDCLQVTYRFQLQNGTSRLLESRARIYRNEHGQAVKLSGT 145 Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+Q ++ E AF D++T Sbjct: 146 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 177 >gi|297569590|ref|YP_003690934.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfurivibrio alkaliphilus AHT2] gi|296925505|gb|ADH86315.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfurivibrio alkaliphilus AHT2] Length = 724 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 121/583 (20%), Positives = 235/583 (40%), Gaps = 30/583 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + + G+ V ++ G + G + + Sbjct: 145 AEERLRRSEYFFHAILESLGEAVVVIGRDMRIISANQGYRHQTGREDEEIIGRHCYEISH 204 Query: 456 IHI-----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD-I 509 + + ++ F + R + ++ P+ +G I Sbjct: 205 GYSRPCWLEEEGCVCAVIRCFQDGSHHTAIHTHR--DKEGNPIYVETNAYPLRPGDGQMI 262 Query: 510 LRYIGIANDITEQKKSLEGILC-------NAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + DITE K E AF D LTG+PNR+ LDRL S Sbjct: 263 YAAVETIRDITELKLMEEEKQRKEVEVYRLAFYDPLTGLPNRRLLLDRLGQAFAASERTG 322 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL- 621 ++ +D+D++K IND G GD +L RR+ ++ D ++R G+ F ++L Sbjct: 323 Q-HGALLFLDLDRFKNINDTRGHQAGDLILREAARRLRATVREDDTVSRQGGDEFVVLLQ 381 Query: 622 ----ISENNSLKIADFAIAMRKSIAMPINL----LEREITVTASIGFASWTSSKITSSEM 673 + A +R +++ P + ++ASIG + ++++ ++ Sbjct: 382 YLATDDATAIKQAGRVAEKIRLALSKPFQFSECQGDCRFHLSASIGVTLFVGHQLSAEDL 441 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV--ENSELYLVYHPIIRLM 731 K A+ AMY AK G + V + ++ + + L + L Y P + Sbjct: 442 FKYADTAMYQAKQAGRDTVRFHDPAMQQALEEAEELERELRRAIDEEHFALHYQPQMD-A 500 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 ++G EAL++W HP+ G I+ F+ +AEE MI I ++L + +W + Sbjct: 501 HGRLLGAEALLRWVHPERGLITPLAFIPLAEENGMILPIGSWVLHAACAQLAAWSGRPGQ 560 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + +N++ + ++ +I T P R+KL +ES+V+ + + + + +L Sbjct: 561 ENFRLAVNVSPRQFHQPNFVGEVEEVIGSTGIDPRRLKLELTESLVLADLNDTIVKMEQL 620 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 R +G+ +DDFGT S L+ L +P + +K + + + + AI+ +II M + + Sbjct: 621 RALGVGFAMDDFGTGYSSLAKLKQLPLEQLKIDRAFIRDLENDPQDAAIVETIIAMGRTL 680 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 I+A+ + E + L + GC Q + + P+ K Sbjct: 681 GFEIVAEGVENEQQLHFLQQHGCHMFQGYYFSPPVSAAKFEKF 723 >gi|269104164|ref|ZP_06156860.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160804|gb|EEZ39301.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp. damselae CIP 102761] Length = 734 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 155/589 (26%), Positives = 283/589 (48%), Gaps = 10/589 (1%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 + I L+ + V+ + L + +Q ++ SLA+ + + D+ + Sbjct: 147 QVEMEAIYSLMSYFVLLYTLKSTSVNQSPSITWDKLSLAINQCSETIVITDLRGNIEYVN 206 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 + G + + G L RD +R + + R Q EF R + Sbjct: 207 DEFERSTGYKAQDVLGKNPRVLQS-GKTTRDTYRDLWKTLRSGE--RWQGEFINRKSCGS 263 Query: 492 FHWMIIRIRPMS--NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 + RI P+ N +G + Y+ I DITE K + + A+ D+LTG+PNR FL Sbjct: 264 EYVEFARITPIRQENGDGSVTHYMAIKKDITETKATRNQVEKLAYYDSLTGLPNRALFLK 323 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 RL +L+ A L ++M ID+D +K+IND G GD +L ++ + I +L+ L Sbjct: 324 RLKKLLNDDAGSSQLPLSLMFIDLDHFKEINDTQGHDHGDCLLQTIGQTIRSILESHHTL 383 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL G+ F +I ++ + A + ++I+ PI L + I+V ASIG + Sbjct: 384 ARLGGDEFVVIAPD-TDAEQAQTIAYKLHQTISQPIPLKGQNISVGASIGITVCEKQGPS 442 Query: 670 SSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728 S +LK A++AMY AK +G G + + + ++ + L A+ +L L + P I Sbjct: 443 VSTLLKQADIAMYRAKAQGNGFCLYLPEMELALNRKITLARKLLSAIRQDKLALNFQPFI 502 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 L ++ VG E L++W G IS +EF+ +AEE ++ I+ +++ R ++SW++Q Sbjct: 503 DLNSQQCVGAEVLLRWFDDDLGWISPAEFIPLAEERHLVSEISNWVIRHTCRQMLSWQNQ 562 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + + INI+++++ + + L+ + SP + + +ES V+ P + + Sbjct: 563 GYVLNGRLSINISAQEIGQESCAQRIIQLVEEEGISPYLLDIEITESAVVVCPHLAEDDI 622 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906 +L K G ++++DDFGT S LS L + + +K + S + + I+ +II +A Sbjct: 623 NQLAKAGFTVSIDDFGTGYSSLSKLKHFSVNKLKIDRSFINELLIDDANRKIVTAIIAVA 682 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954 K++ ++A+ + + L+ MGCD+ Q PL + + LK Sbjct: 683 KSLCLQLVAEGVEDKQQEALLSEMGCDFAQGYLYTKPLANDQFARYWLK 731 >gi|299134767|ref|ZP_07027959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] gi|298590577|gb|EFI50780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Afipia sp. 1NLS2] Length = 904 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 137/616 (22%), Positives = 264/616 (42%), Gaps = 25/616 (4%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 I++ ++ + + + +++ F V + + Q + + Sbjct: 298 IVMIATRTVDSALADWHEQTRVLVLIALAASIAVALIVLFIVRRFISQHNAAQQRLMLEK 357 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 +R AV + +D V + GL + S+ + + Sbjct: 358 KRLDTAVNNLKQGLLLFDANHRLVIFNRRYMEMFGLPNDSIKPGY-SLREIM-------A 409 Query: 465 RTILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILR--YIGIANDITE 521 F++ + + I R + + I ++ DITE Sbjct: 410 LRKKHGMFDGDIDAYCVKVFKLVSTNGTLTINIPDGRVIHTALQSISGGGWVLTLEDITE 469 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 ++++ + I A D LT +PNR F D L +L V+ IDID++K++ND Sbjct: 470 RQRAEDRIAHMARYDALTDLPNRTMFRDHLDKMLKK-----EENLAVLSIDIDEFKQVND 524 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG VGD++LVS+ R+ ++ DI+ARL G+ F II ++ + +I Sbjct: 525 TLGHFVGDELLVSIANRLSGCMERDDIVARLGGDEFAIIRHGVQERSELIPLIERVHAAI 584 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699 +P + + ASIG A +L+NA+LA+Y AK G F Sbjct: 585 RVPYDCTGHHLNADASIGIAMSPCDGSELEGLLRNADLALYAAKGSGRRTYRFFEPEMKV 644 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 R ++ ++ A+ + + + Y P I + +I+G EAL++W HP+ G +S ++F+ Sbjct: 645 RAQKRHDMEMEIRNALFHQQFEVHYQPFIDVKTRKILGCEALVRWRHPRHGLVSPADFIP 704 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAEE +I + ++L+ +W D I + +N++ + L + + + Sbjct: 705 IAEETGLIDQLGSWVLKTACHAAANWPD-----DIRLAVNVSPVQFKGHTLALNVASALG 759 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 + +R++L +E+V++ + E + +L LR +G+ + LDDFGT S L YL PF+ Sbjct: 760 SSGLPANRLELEITEAVLIRDDEEALAILHELRGLGVRIALDDFGTGYSSLRYLQLFPFN 819 Query: 880 TVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + + T E I+++++ +A T A+ + + L ++GCD +Q Sbjct: 820 KIKIDRCFIQNITEPEGASHIVKAVVDIAAARNMTTTAEGVETAEQLAVLRKLGCDQMQG 879 Query: 938 SHVASPLGFNSILKLL 953 + L + +L+ Sbjct: 880 FFFSPALTEEKLSRLV 895 >gi|331697858|ref|YP_004334097.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudonocardia dioxanivorans CB1190] gi|326952547|gb|AEA26244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudonocardia dioxanivorans CB1190] Length = 714 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 147/603 (24%), Positives = 261/603 (43%), Gaps = 13/603 (2%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + ++ + I+ V A + S R SG + Sbjct: 117 VTAAVVAGYVARMRARILDEQETVRQAEVQARKQTQDALLSSEARFRAIFENSGIGIGIA 176 Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D+ V A++LG N +++ +D + + +R + + Sbjct: 177 DMDGRIVDANEAFASMLGYTVEEF--CRINVADFVYPDDAQGMWELYAEIIEGKREQARV 234 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E R R D + W + + ++ GD L + +A D T + + + + A D LTG+ Sbjct: 235 EKRYRHRDGRMVWTDLTASLIRDAQGDPLYTVAMAEDATTRHELQDRLRHQALHDPLTGL 294 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR +RL + R V +D+D +K +ND LG +GD +LV+++ R+ + Sbjct: 295 PNRTMVNERLAELFSR----PGGRIGVCYLDVDNFKIVNDRLGHGIGDKLLVAISARLHQ 350 Query: 602 LLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 + ++ R+ G+ F IL+ + ++A A + S+A P+++ E + VTASIG Sbjct: 351 CVAERGHLVGRMGGDEFV-ILVQDPPPGEVALVADLVLASLASPVDVDEHRLVVTASIGV 409 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENS 718 T +E+LK A++ +Y AK G + R + L +E Sbjct: 410 VETDVDDTTPAEVLKAADVTLYWAKSDGRARWAQYDPERAALDMTRFTLTATLAAGLERD 469 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 E + Y PI+RL D + G+EAL++WDHP G + F+ +AEE I + +L Sbjct: 470 EFEVEYQPIVRLDDGAVAGVEALVRWDHPTLGRLGPDRFIEVAEETGAIVPLGRHVLREA 529 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 R W + +F+ +N+A + D L + +++ T P ++L +ES ++ Sbjct: 530 CRRAARWNAENPGADLFVSVNLAVRQAHDPALVSDVADILADTGLPPHLLQLELTESALL 589 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TEKR 895 G R +G L +GI + +DDFGT S L YL +P ++K G L+ G T Sbjct: 590 GPAGRPVDAIGALADLGIRIAVDDFGTGYSNLGYLPRLPLHSLKLAGVLVEGLRSPTAGA 649 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ S++ +A + T+ + + L GCD Q A P +++++ L Sbjct: 650 SRIVTSLVALAHALGLTVTGEGVETPAQAARLRTAGCDTAQGWLYARPAPWDAVVAALGR 709 Query: 956 RFP 958 P Sbjct: 710 TRP 712 >gi|119946359|ref|YP_944039.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] gi|119864963|gb|ABM04440.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] Length = 591 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 130/452 (28%), Positives = 226/452 (50%), Gaps = 15/452 (3%) Query: 515 IANDIT----EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + D+T E+ K E + AF D LTG+PNR+ +DRL L + VM Sbjct: 136 VNQDLTFQSKEKAKLAEELNDLAFYDTLTGLPNRRLLIDRLHHALASNVR-QGCESAVMF 194 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN---- 626 ID+D +K IND LG VGD +L+ +R+ L+ D +ARL G+ F +IL + + Sbjct: 195 IDLDHFKDINDTLGHEVGDLLLIQTAQRLESCLRKGDTVARLGGDEFMLILENLDENPIE 254 Query: 627 -SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + K A + + P L + T SIG + T+ +++K A++AMY AK Sbjct: 255 AATKAKAIADKILAELNKPYQLDMHKCHSTVSIGAVFFDHQGNTAEDLIKQADIAMYQAK 314 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 GGN + F S ++ +L +A+E S+ +L Y + D ++G EALI+ Sbjct: 315 QAGGNLIRFFNPKMQESINARITLENELRIAIEKSQFHLYYQIQMD-SDNRVLGAEALIR 373 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W +P+ G + + F+ IAEE +I +I +++E I W+ ++ + + +N+++K Sbjct: 374 WTNPEHGLVLPATFIPIAEETGLILSIGKWVIETACAQIKVWQKKSQTRDLTLAVNVSAK 433 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + + +Q+ + + + +KL +ES++ + E + ++ L KIG+ +LDDF Sbjct: 434 QFRQKDFVDQVQSAVQRHAIPGNLLKLELTESLLQYDTEVTIAMMKALNKIGVQFSLDDF 493 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L YL +P D K + S + AI+++II MA+ ++ +IA+ + E Sbjct: 494 GTGYSSLQYLKRLPLDQFKIDQSFVRDIATDNNDKAIVKAIIAMAQILDIDVIAEGVETE 553 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L GC Q + P+ + L+ Sbjct: 554 EQQQLLLGKGCTLYQGYLFSKPIPIDQFDALI 585 >gi|229194143|ref|ZP_04321006.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] gi|228589326|gb|EEK47282.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] Length = 828 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 81 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 137 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ E I AF D +T I NR F L + + Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLQLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W + + Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHS-TGFSNLKM 663 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 723 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFIGFLS 823 >gi|28869374|ref|NP_791993.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852615|gb|AAO55688.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 730 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 142/571 (24%), Positives = 262/571 (45%), Gaps = 26/571 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 154 AQAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAREVLGRTAHEIG 213 Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W + R + + + E R + + + ++ +N Sbjct: 214 IWTDTV-------QREFMIDELRQKGRMHHREMNGRDKKGAPLVLDVSVEFITLNN--TA 264 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + A DI + K + I A+ D LTG+PNR +DRL+ + L NLR ++ Sbjct: 265 CLLMNARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLF 323 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--- 627 +D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ + S Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARLGGDEFVVLICGLDGSLEH 383 Query: 628 --LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ A +R +A P+ L + VT S+G +T +++LK A++A+Y AK Sbjct: 384 VTHQVRVLADNLRVLLAEPMFLDGHRLQVTPSVGIVLIPDDGLTPADLLKRADIALYRAK 443 Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + F VS + S R+ ++ DL LA+ +E +L + + +I G EAL++ Sbjct: 444 DSGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRTNQITGAEALLR 503 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIA 801 W HP++G ++ +F+ I EE MI + +L+ + Q + +N++ Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNVS 563 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + ++ E ++ + + + +KL +E +V+ N + + L + LR +G+ +D Sbjct: 564 PRQFRQSDFVERVEHSLKQHHLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAMD 623 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P DT+K + S + S I+R+I+ MA+++ +IA+ + Sbjct: 624 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGVE 683 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + L R+GC Q + PL Sbjct: 684 TPEQLAFLERVGCYNYQGYLFSEPLPGPEFE 714 Score = 91.9 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 8/151 (5%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + R LA+ + WD +I R+ + + + G+ + R + + Sbjct: 27 ERILEETRARLELALDLAQMGTWDLNITHSRLQASARASFLHGMDAQPFDDDSRLFFDRL 86 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + +RD R + + R+ LQ +R + D + R R + G+ ++ G Sbjct: 87 PVEERDRVRAAYTAALESRQDCLQMTYRFQMKDGTSRLIESRGRIYRDEIGNPVKLAGTL 146 Query: 517 NDITEQK-----KSLEGILCNAFQ---DNLT 539 DIT+Q ++ E AF D++T Sbjct: 147 LDITQQCAQAALEASEEKFAKAFHSSPDSIT 177 >gi|291439458|ref|ZP_06578848.1| sensory box/GGDEF family protein [Streptomyces ghanaensis ATCC 14672] gi|291342353|gb|EFE69309.1| sensory box/GGDEF family protein [Streptomyces ghanaensis ATCC 14672] Length = 649 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 133/569 (23%), Positives = 267/569 (46%), Gaps = 27/569 (4%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 A + + D V+ +AT+LG ++ G + L + + Sbjct: 74 YRAAFAVAPLAMAVVDREGMVVSANGSLATLLGSDPDTLTGAVAADLVDLSSD--ARIWH 131 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + R+ +L+ R++ + W+ + + P+ + + D++ +++ Sbjct: 132 AYREVLRGRQAKLRCTRRLKHPEGHAPWVRVTVAPLPADD---EGVLLSVTDLSTRRELQ 188 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKINDVLG 584 + D +T +PNR FL+RLT L+ R + +D+D +K IND LG Sbjct: 189 ARLRHARLHDPVTRLPNRTLFLERLTAALEAESYERSGTGRIGLCHVDLDGFKAINDTLG 248 Query: 585 IAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAM 637 +GD +L ++ R+ + ++ARL G+ F +++ + ++AD A ++ Sbjct: 249 HRMGDRLLAAVAERLTRCARESGRSRAGAPLVARLGGDEFALLVEDSTGTEQLADLAESV 308 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +I +P +L + ++V+ASIG ++ T + +++ A+ +Y AK G F Sbjct: 309 LGAIQVPFDLCGQRLSVSASIGVVERHTAGTTPTALMQAADTTLYWAKADGRARWTLFDP 368 Query: 698 SSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 R + L A+E E L Y P++ + D+ + G+EAL++W+HP++G ++ + Sbjct: 369 ERNAHRVTRQALASALRPAIERGEFALEYQPLVGMEDDRVHGVEALVRWNHPRFGTLTPN 428 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGM 814 F+ +AEE I + ++L R W+++ PPIF+ +N+A + + D++L + Sbjct: 429 RFIGLAEEDGSIVPLGRWVLRTACRQARRWQEEHPEEPPIFVSVNVAVRQIRDSDLVADV 488 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++ T +P ++L +ES VMG+ R +L L +G+ + +DDFGT S L+ L Sbjct: 489 AGILADTGLAPRLLQLELTESAVMGSSGRPLQVLRELSDMGVRIAIDDFGTGYSNLANLS 548 Query: 875 YIPFDTVKFNGSLMTG----------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 +P +K +G+ + G I+ +++ +A + T+ A+ + Sbjct: 549 RLPVSVLKLDGAFVRGFPYEERSAAPPNPADEVIVEAMVQLAHRLGLTVTAECVETSAQA 608 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953 L R+GCD Q + P+ + I +LL Sbjct: 609 TRLRRIGCDTGQGWLYSRPVPPDRISELL 637 >gi|221126755|ref|XP_002164849.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 478 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 127/455 (27%), Positives = 227/455 (49%), Gaps = 6/455 (1%) Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G+++ YIGI+ DIT++K E I A D LT +PNR RL + + + Sbjct: 12 GEVVNYIGISIDITDRKAKEERIRFLAQHDVLTELPNRALCQQRLGEAIASA-RHTGEKV 70 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ ID+D++K IND LG +GD +L ++ RR+ ++ D ++RL G+ F IIL + Sbjct: 71 AVLFIDLDRFKLINDTLGHHIGDGLLRTVARRLSSAVRSDDTVSRLGGDEFVIILRHVTD 130 Query: 627 -SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A + +I + +TV+ S+G A + E+++ A+ AMY AK Sbjct: 131 LPELTAMVNDRLIPTIRQTATVDGHVLTVSCSVGVALYPEDATDQDELMRRADAAMYEAK 190 Query: 686 HRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G + F + + R ++ L A+ N E L Y P + ++ G EAL++ Sbjct: 191 SAGRDTARFFSPETDQRVLARQSMETQLRQALANEEFSLHYQPRLNARTRKVQGAEALLR 250 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W +P G + EF+ +AEE +IK I ++L R+ +S +Q + + +N++ Sbjct: 251 WKNPLLGQVPPGEFIHVAEESGLIKPIGAWVLREACRNWMSMEEQGICKGLELSVNLSVA 310 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L D EL + + A++ T P++++L +ES +M NP ++ + L+ +G+ + +DDF Sbjct: 311 QLADPELVDQLSAVLRDTRMPPAQLELELTESHLMDNPVAAQQQVAALKALGVKVAIDDF 370 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL D +K + S + G AI+ ++I + + ++A+ + Sbjct: 371 GTGYSSLAYLKRFDIDKLKVDQSFVLGMLEDSADAAIVHAVIALGHTLGLKVVAEGVENL 430 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + LT +GCD +Q + P+ + L+ Sbjct: 431 PTAQTLTALGCDELQGYCFSRPIPLAEWVAYLRSH 465 >gi|221064949|ref|ZP_03541054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] gi|220709972|gb|EED65340.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] Length = 692 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 134/588 (22%), Positives = 252/588 (42%), Gaps = 16/588 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ ++ V +Q I ER + ++ ++ Sbjct: 116 VLKGVVALMTDVSHHHLATQQIRDSEERMR-KFAAITTEAIVLHRDGVIMDGNDALSRLV 174 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + + G L Y+ R L + R RL+ V + Q + I Sbjct: 175 GYSLDELRGTP--VLDYVAPEAR---LRALQNMRSEREDRLESV--VVHKNGQLVPVEIE 227 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 M I + D+T ++ + + D LT +PNR L + + Sbjct: 228 ASTMPGEKDR--HRIVLLRDLTANLQTRQRMDYLTQHDLLTHLPNRARLNHLLADAIARA 285 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 A + R V+ +D+D++K +ND L GD +L L R+ + DI+AR + F Sbjct: 286 A-GEQSRLAVLSLDLDQFKSVNDSLSHQAGDLLLCELAHRLRSTVGTQDIVARTGSDDFV 344 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I+L + L+ +R + P + ++ ++ S+G A + + +L NAE Sbjct: 345 IVLPDNPSLLETEALLARLRATAEAPYLIEGTQLVISVSVGVAMYPKDGKCPASLLSNAE 404 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AM AK RG + + + + M+ ++ L AVE E L Y P + E+ Sbjct: 405 AAMQMAKSRGRSFSQFYTPALESRATRMLMQEQMLRNAVERGEFELHYQPQTLMQTGELA 464 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP G +S EF+ AE +I A++ ++L + R +W+ Q P I + Sbjct: 465 GFEALVRWRHPHRGLVSPDEFIGFAENRGLIAAVDRWVLNQACRQAHAWQQQ-GFPAIPV 523 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++++ ++ + + ++ T + + +E+ +M + + + L L+ +G+ Sbjct: 524 AVNLSAQEFRQRDVVKEVAQALADTGLEACYLHIEVTETTLMLSGNQMQQTLHALKALGV 583 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L +DDFGT S L+YL P D +K + S +T AI+ +I+ M +++ I+ Sbjct: 584 GLAIDDFGTGYSSLAYLRKHPIDRLKIDRSFVTDLPHNPDAAAIVNAIVQMGQSLHLEIL 643 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 A+ + + L MGC +Q V++PL + + L++ Sbjct: 644 AEGVESTEQLDMLREMGCAMMQGFLVSAPLPAEQASAWMSQHCQLLQR 691 >gi|311232702|gb|ADP85556.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris RCH1] Length = 1065 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 148/554 (26%), Positives = 249/554 (44%), Gaps = 11/554 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465 L + + + D + P TI G G R H DR + Sbjct: 500 FELVFRNALEGILITDASGAILAVNPAFTTITGWNERDAVGRNPRILKSNRH--DRGFYE 557 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + S + RG + E R + + + + I + + +G Y+ + +DI++ K Sbjct: 558 RLWHSL--HERGAWEGEIWNRRINGENYPEWLSISAIRDESGATTNYVALFHDISDLKAK 615 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 I D LTG+PNR L+RL L L ++ IDID +K IND LG Sbjct: 616 EAQIRYQGMHDALTGLPNRALLLERLAGELKEGQGTGRL-CGLLYIDIDNFKTINDSLGH 674 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD + + + L++ D L+RL G+ + I++ + ++ A + + PI Sbjct: 675 EAGDKFIAEVAEHLTLLIRPEDTLSRLGGDEYVILVANPGEEREVVLVAERILHHFSQPI 734 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703 LL+RE+ V SIG A + E+L NA+LAMY AK +G N E F + Sbjct: 735 ALLDRELHVGLSIGIAIHPADGKGPDELLTNADLAMYRAKAQGKNTYERFSPHLHDRIRS 794 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R+ ++ L A+ + E+ + P + L IVG EAL +W P IS EF+ +AE+ Sbjct: 795 RMELEGRLRHALRHGEIVPHFQPRVDLATGRIVGAEALARWTLPDGTRISPGEFIPVAED 854 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 L +I + ML + D+ P I + +N++ +L + A + T Sbjct: 855 LGLIFDLGEHMLRSSLAFTRALMDEGL-PDITMAVNLSLVQCRHADLVGRVLAALRDTGV 913 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P R++L +ES +M + R+ L RL +GI+L +DDFGT S L +L ++P T+K Sbjct: 914 PPERLELEITESAIMSDVTRTLRRLDRLAALGITLAVDDFGTGYSSLYHLKHMPLHTLKI 973 Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + I +++ MA+N++ +IA+ + + L GC +Q + Sbjct: 974 DQSFVRDLPHVAGSRTIALTMLAMARNLDLDVIAEGVETGAQMHFLRDHGCRVVQGFLFS 1033 Query: 942 SPLGFNSILKLLKE 955 + + + LL+ Sbjct: 1034 PAVPGDRLFDLLRR 1047 >gi|148657838|ref|YP_001278043.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus sp. RS-1] gi|148569948|gb|ABQ92093.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Roseiflexus sp. RS-1] Length = 796 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 135/579 (23%), Positives = 268/579 (46%), Gaps = 10/579 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +L + D A+ + D + D+ P ++GL + Sbjct: 220 AILRAASRQHRLDVDLRLMMAAISSTSDGIVIADLDGIPHYQNPAFQAMVGLTLDDL--R 277 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L ++ RD + E R+ + + + P+ + +G Sbjct: 278 AAGGLQRLY---RDPGVARAALAAVRNGQSYRGEMRLIDHRGNALNVHVNLDPVLDPSGR 334 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + I + D+T++K + + + D LTG+ NR LDRL LD + +L V Sbjct: 335 AIALIAVHTDVTQRKLTEARLAYLSSHDPLTGLANRTLLLDRLQQALDRRNRERSLPCGV 394 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 ++I++D++K+IND LG AVGD+VL+++ R+ + + D +AR G+ F +++ S + Sbjct: 395 LLINLDRFKQINDSLGHAVGDEVLIAVAGRLKHITRPGDTVARFGGDEFAVVIDSPGSVE 454 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 I A ++ ++ P+ + + +TV SIG A + +L NA+ A++ AK RG Sbjct: 455 DIWRVAKRVQHTLNHPVTVQDHSLTVGVSIGIAVDDGRAKDAMTLLHNADTALHQAKARG 514 Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 + + F + + + ++ ++ +L AV++ L + Y PI+ L E+ G EAL++W H Sbjct: 515 RSRIVMFEEAMHTEAARQLQLEIELRQAVQHQTLEMHYQPIVDLCSGELYGFEALMRWQH 574 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDL 805 P G + F+ IAEE +I + + + + R WRD+ + I +NI S+ L Sbjct: 575 PSHGLLFPDSFLPIAEEAGIIPTLGNWSIAEVCRQARRWRDRFGAAADVPISVNIHSQHL 634 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 +L ++ ++ + + + + +E + + + L L+ +G+ + LDDFGT Sbjct: 635 DQADLFAQVEQVLRQQNLPGAALTIEITEKAALNDLDLVLSQLLPLKALGVRVMLDDFGT 694 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LS+L +P D K + S + I+R++I +A+ ++ ++A+ + E Sbjct: 695 GYSSLSHLARLPVDGGKIDRSFVQSMMHDPHAATIVRAVITLARELQLNVVAEGVETEEQ 754 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 L ++ C Y Q +++ ++L R + ++ Sbjct: 755 RAALLQLRCPYAQGWLFGRAADADTMTRVLAARPHMSRS 793 >gi|228922228|ref|ZP_04085535.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837283|gb|EEM82617.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 785 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 38 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 94 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 153 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 207 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 267 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 268 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 324 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ E I AF D +T I NR F L + + Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 383 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 442 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 443 IIVHNQT-EQQLLDLCTTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 561 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W + + Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 620 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 621 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 680 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 740 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 741 AEGVETKEQLTVLQRTACYLIQGYYYSKPVNEDEFIGFLS 780 >gi|330950940|gb|EGH51200.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 709 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 139/583 (23%), Positives = 261/583 (44%), Gaps = 12/583 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKSFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L + + D + + E ++R Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + ++ID +K IN+ G +GD+VL+ ++RR+ L D L R+ G Sbjct: 297 MTQAAIS-RWKLAALTVNIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ +R ++ P ++ + + +TASIG A + S E++ Sbjct: 356 DQFALILMLRPGQADTRQTLERIRNALRAPFHIEGQSLVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM A+ G ++ + R+ ++ L AV N +VY P + L + Sbjct: 416 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQSFEIVYQPKLDLNN 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + I GLEAL++W P +S + F+ + E L +I + ++++ + I W+ Sbjct: 476 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGL 535 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 536 -FQVAVNISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTTHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + + L CD IQ ++ PL + L Sbjct: 655 LQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFL 697 >gi|165872396|ref|ZP_02217031.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167639859|ref|ZP_02398128.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|177652058|ref|ZP_02934604.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190568497|ref|ZP_03021404.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227813349|ref|YP_002813358.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229602463|ref|YP_002867986.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|254721175|ref|ZP_05182966.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055] gi|254735785|ref|ZP_05193491.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western North America USA6153] gi|254751085|ref|ZP_05203124.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum] gi|164711834|gb|EDR17376.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167512260|gb|EDR87637.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|172082427|gb|EDT67492.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190560501|gb|EDV14479.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|227003567|gb|ACP13310.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|229266871|gb|ACQ48508.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] Length = 908 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFS 897 Query: 951 KLLKE 955 LLK+ Sbjct: 898 TLLKK 902 >gi|71726098|gb|AAZ39221.1| putative signal transduction protein [Janthinobacterium lividum] Length = 668 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 132/564 (23%), Positives = 248/564 (43%), Gaps = 16/564 (2%) Query: 399 GIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 R L + +GD+V+ D + + AT+ G A + G + LP Sbjct: 96 SAAHREARHELDNLMEEAGDVVFRLDTDGLILFASKRAATLFG-APSGLSGHL--LLPLA 152 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R + L+ + + E R++ D Q W +R+ N+ G + + + Sbjct: 153 AEASRAALQAALEDALAEPG---RLEVRLQTPD-QEIWFELRLSSYMNAAG-VAELLVVG 207 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D + Q + E + A D LTG+PNR DR+ ++ +A +V I +D + Sbjct: 208 RDTSAQHNTEERLRHMATHDALTGLPNRLLLSDRIRMVIAQAARSGQG-FSVATIGLDGF 266 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 KK+ND LG VGD VL R+ + L+ D LAR+ G+ F +L +I Sbjct: 267 KKVNDGLGHPVGDAVLRLAAARLRKTLRDSDTLARVGGDEFVAVLPGSATDAQIKLVTGR 326 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P + I V AS+G + + ++ A+ AM AK G + Sbjct: 327 LLATLQAPFEVDGHTIYVGASVGVSIYPLHAEDEVRLVALADAAMSRAKETGKARCLVYS 386 Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + ++ + AV E L Y PI+ +I G E L++W HP G + Sbjct: 387 PRLNGPSEHDISLEAAMFHAVREGEFLLFYQPIVDAHTRQIQGFETLMRWKHPTLGLVPP 446 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAE +I + + L+ + +++ A P++I +NI+ + +++ + + Sbjct: 447 VRFIPIAEANGLINLLGAWALKAACVQLKQFQEVARR-PLYISVNISPRQFRNDKFLDVL 505 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 I+ + S + L +E +M +P + +L ++ + + +DDFGT S L+YL Sbjct: 506 DDAIAFSGLSGEHLVLEITEGTLMIDPVHAETILVKMTERRARIAIDDFGTGYSSLAYLK 565 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P +K + + + + K AI +I+ +AK++ +++A+ + E + + GC Sbjct: 566 RFPISVLKIDRTFIKDLPESSKDAAICNTILDLAKHLNLSVVAEGVETEEQMHFMESRGC 625 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 Y+Q P+ ++ L L ++ Sbjct: 626 QYVQGYLTGKPMPAHAALSALSDK 649 >gi|119945689|ref|YP_943369.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] gi|119864293|gb|ABM03770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Psychromonas ingrahamii 37] Length = 724 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 125/558 (22%), Positives = 248/558 (44%), Gaps = 24/558 (4%) Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 W D+ + T + I + + + + Y + + LD + Sbjct: 158 RLGGWKLDLKTGDLFWTDETYRIHETSPEEFNPTVDAGIGYFLPDSQKIISKALDEAINN 217 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-- 532 G E + + + ++ +G +R GI DI+EQK + + + Sbjct: 218 GIG-YDLELQTYTTKGRKIDVRTTC-IVTQEDGVAVRLTGIFQDISEQKANQRKLEKSNL 275 Query: 533 ------------AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 A D LTG+PNR DR+ + S +D V ID+D +K +N Sbjct: 276 DLANANSALKLSAHYDPLTGLPNRILLADRIQQAVAKSLRNDKY-VAVAFIDLDGFKAVN 334 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G +GD++L + +R+ +L+ D L+R G+ F ++ + ++ + + M +S Sbjct: 335 DSHGHTIGDELLKKVAKRLKHVLREGDTLSRFGGDEFVAVIDNLSDPRESDLIVLRMLES 394 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 ++ + + ++ + ++ASIG + ++L++A+ AMY AK +G N F + Sbjct: 395 VSSTLVVEKKLLKISASIGVTFYPLDSAGPEQLLRHADQAMYMAKQQGKNRSYVFDIEQD 454 Query: 701 RSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + + + A++N+E L Y P L +VG+EALI+W+HP G ++ + F+ Sbjct: 455 VAIKHHNEALKRIAQALKNNEFALYYQPKTDLRSNRVVGVEALIRWNHPDRGVLAPAMFL 514 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 E + I ++++ + +W I I +NI+ L E ++ ++ Sbjct: 515 PAVEHDILDIEIGKWVIKTALQQSQNWLSSG--TDIPISVNISPLHLQHAEFVSELKRML 572 Query: 819 SKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + ++ ES + + E ++ ++G+ ++DDFGT S L+YL +P Sbjct: 573 DQYPNINAGSLEFEILESSALKDIELVSKVMKECNQLGVRFSIDDFGTGYSSLTYLKRLP 632 Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +T+K + S + AI++ II +AK +IA+ + + L +GC ++ Sbjct: 633 AETLKIDQSFVRDMLIDTDDKAIIQGIIELAKVFNLKVIAEGVETPQHGELLLSLGCYFV 692 Query: 936 QDSHVASPLGFNSILKLL 953 Q +A P+ N +L L Sbjct: 693 QGYGIAKPMHENDVLTWL 710 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNF 464 R L + +G +WDW + +T A I+G + +W +H +D Sbjct: 18 RLELVINATGVGIWDWQVQTGELTFNKRWAEIIGYTFDELQPIQFDSWASNLHPDDLVKA 77 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523 +++L + E R++ + W++ + + + G R IG DI E+K Sbjct: 78 KSLLAQHFNGEIDFYELEARMKHKSGHYVWVLASGKLVERDEQGKPKRMIGTHLDINERK 137 Query: 524 KSLE 527 + E Sbjct: 138 NNEE 141 >gi|229104309|ref|ZP_04234978.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] gi|228679007|gb|EEL33215.1| Sensory box/GGDEF [Bacillus cereus Rock3-28] Length = 909 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 163/725 (22%), Positives = 317/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + + I ++ Sbjct: 194 PTVFNSKRKIYIFIFVLISSATFNYIYFYLYSHLANDTITLLRLLYRVPILLIAIAGSIS 253 Query: 304 PM---------VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 V + + L +I +K + LI + F++ + Sbjct: 254 DDYNSNKNYFTVHPKLGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLI- 312 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 +I + + + L + + S+ + ++ Sbjct: 313 RHSIVGMQNATLTKRLQAFNAQLEDKV-----TLRTSDLVHKSEALSEKQQKFESLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ T L+ Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSVLLGAPTNELLGETC--FSIILDEDKHKLLTALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + LQ + D +++ + I P+ +G I + DIT QKK E I AF Sbjct: 426 KSASLQLSSQY--KDGFIYFLYVTIVPIM-IDGQISGSYIMVKDITAQKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + T N ++ +D+D++K IND LG + GD +L Sbjct: 483 HDAVTKIGNRAYFHKKLRKVIKNAQT-INSEFALLYLDLDRFKAINDTLGHSSGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L ++R+ G+ F I++ + + + + +S+ P + E+++ V Sbjct: 542 VAQRFQSCLPSHTYVSRIGGDEFTILIENYTDHDSLFQLCNELFESMKKPFVIHEQKLNV 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I +S +LKNA +AMY AK + + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDASTLLKNANVAMYDAKEKELNSVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 662 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + ++ T S + L Sbjct: 722 WTLQQACEQMKRWH-VLGYSHLKIGVNLSAKEFEQEDFVKSISFTLATTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K M+ Sbjct: 781 TERIAMMDERETLIKLRTLKNLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFMTMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + E + I+++II +A +E ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 841 TCEDGMEIIKTIITLAHTLEMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYSNAFT 900 Query: 951 KLLKE 955 KLLK Sbjct: 901 KLLKN 905 >gi|120603555|ref|YP_967955.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris DP4] gi|120563784|gb|ABM29528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris DP4] Length = 1065 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 148/554 (26%), Positives = 249/554 (44%), Gaps = 11/554 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465 L + + + D + P TI G G R H DR + Sbjct: 500 FELVFRNALEGILITDASGAILAVNPAFTTITGWNERDAVGRNPRILKSNRH--DRGFYE 557 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + S + RG + E R + + + + I + + +G Y+ + +DI++ K Sbjct: 558 RLWHSL--HERGAWEGEIWNRRINGENYPEWLSISAIRDESGATTNYVALFHDISDLKAK 615 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 I D LTG+PNR L+RL L L ++ IDID +K IND LG Sbjct: 616 EAQIRYQGMHDALTGLPNRALLLERLAGELKEGQGTGRL-CGLLYIDIDNFKTINDSLGH 674 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD + + + L++ D L+RL G+ + I++ + ++ A + + PI Sbjct: 675 EAGDKFIAEVAEHLTLLIRPEDTLSRLGGDEYVILVANPGEEREVVLVAERILHHFSQPI 734 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703 LL+RE+ V SIG A + E+L NA+LAMY AK +G N E F + Sbjct: 735 ALLDRELHVGLSIGIAIHPADGKGPDELLTNADLAMYRAKAQGKNTYERFSPHLHDRIRS 794 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R+ ++ L A+ + E+ + P + L IVG EAL +W P IS EF+ +AE+ Sbjct: 795 RMELEGRLRHALRHGEIVPHFQPRVDLATGRIVGAEALARWTLPDGTRISPGEFIPVAED 854 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 L +I + ML + D+ P I + +N++ +L + A + T Sbjct: 855 LGLIFDLGEHMLRSSLAFTRALMDEGL-PDITMAVNLSLVQCRHADLVGRVLAALRDTGV 913 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P R++L +ES +M + R+ L RL +GI+L +DDFGT S L +L ++P T+K Sbjct: 914 PPERLELEITESAIMSDVTRTLRRLDRLAALGITLAVDDFGTGYSSLYHLKHMPLHTLKI 973 Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + I +++ MA+N++ +IA+ + + L GC +Q + Sbjct: 974 DQSFVRDLPHVAGSRTIALTMLAMARNLDLDVIAEGVETGAQMHFLRDHGCRVVQGFLFS 1033 Query: 942 SPLGFNSILKLLKE 955 + + + LL+ Sbjct: 1034 PAVPGDRLFDLLRR 1047 >gi|158338331|ref|YP_001519508.1| cyclic diguanylate phosphodiesterase domain-containing protein [Acaryochloris marina MBIC11017] gi|158308572|gb|ABW30189.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Acaryochloris marina MBIC11017] Length = 898 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 124/440 (28%), Positives = 231/440 (52%), Gaps = 6/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E++ E I AF D LTG+PNR F +RL L + + + VM +D+DK+K IN Sbjct: 438 ERQDKDEIIHRQAFHDALTGLPNRVLFAERLDHALTDARRNQD-NLAVMFMDLDKFKTIN 496 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +VGD++L + R+ L+ D +AR G+ F ++L A + + Sbjct: 497 DTLGHSVGDELLKEVANRLQHCLRGGDTVARWGGDEFTLLLAKIRTIADATRTAQRILDA 556 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698 + + EI + ASIG A + + +L+NA++A+Y K +G + + ++ Sbjct: 557 FKEVVKIDHHEIYINASIGIACFPDDGQEAEVLLQNADVALYQCKEQGRGIFQVYDADMN 616 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 S ++ ++ +L A+E E L Y P I L EI GLEALI+W HP+ G +S + F+ Sbjct: 617 SEATELFALQNNLRHALERQEFMLFYQPQINLQSGEITGLEALIRWQHPEQGLVSPATFI 676 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I I ++LE + I+ W+ + P+ I +N++++ D L E + ++ Sbjct: 677 PLAEESDLIVQIGKWVLEVACQQIVEWQRISG-LPLTISVNLSARQFYDPTLVETISQVL 735 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T P ++L +E++ + N ++ +L +L+ +GI + +DDFGT S L+YL +P Sbjct: 736 RQTQLDPKYLELEITETIAIKNIPLAQQVLKQLQGMGIKIAMDDFGTGFSSLNYLTQLPL 795 Query: 879 DTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 DT+K + S + T + + +++ + + + +++A+ + ++ L + C+ +Q Sbjct: 796 DTLKIDQSFIKRLTSDAKELEVINAVLSLGRGLHLSVVAEGVDTPEQLELLKSLKCETVQ 855 Query: 937 DSHVASPLGFNSILKLLKER 956 ++ PL L+ + Sbjct: 856 GFLISPPLPVLEATSKLQAK 875 >gi|121595999|ref|YP_987895.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] gi|120608079|gb|ABM43819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax sp. JS42] Length = 737 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 131/586 (22%), Positives = 268/586 (45%), Gaps = 20/586 (3%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ F +I + + + ER + + + + + + + ++ Sbjct: 162 AMVGAFVLINDITHHWEAERAVRQSEERMRKFAIATEEGL-AFHRDGRILDANEALQRMV 220 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + + G R L R YE +R D + + + Sbjct: 221 GYSLAELVGQSIFDFAL--PEYR-----ALAVEYTRRGSEKPYELAMRHKDGRVIPIEVV 273 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGI----LCNAFQDNLTGIPNRQSFLDRLTTI 554 + M GD + + DIT +K++ E D LT +PNR+ + +L Sbjct: 274 GKTMPQQEGD--YRVVVVRDITARKQAQEQAQVQARFLVLHDTLTQLPNRRHLMMQLAR- 330 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + R V+ ID+D +K +N++LG GD +L+ + RR+ + +K D +AR+ G Sbjct: 331 MASAAQERQTRAAVLFIDLDHFKTVNELLGNQAGDQLLIEMARRLQDGVKATDFVARVGG 390 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F ++L N A+ A A+ + + ++++ SIG + + + E+L Sbjct: 391 DQFIVLLPDLANRAAAAEVADALLARVRAEFAIGGTPLSLSPSIGISVFPDDGYSPDELL 450 Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 + A+ AM+H K G + + ++ + + L AV L Y P +R+ D Sbjct: 451 RRADAAMHHTKESGRGTRMFYEPGMEGQPTELLQQEHLLREAVFQGAFALHYQPQVRVAD 510 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +VG EAL++W HP G + EF+ +AE +I I ++L R + +W D+ P Sbjct: 511 GRLVGFEALVRWRHPVRGLVGPDEFIPLAESRGLITPIGRWVLREACRQLKAWHDEGL-P 569 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +N+++ + ++ + ++ +P +++ +ES +M + +R L L+ Sbjct: 570 RVPVAVNLSAIEFRQRDVVGEIAQVLQSAGLAPQYLEVEITESALMQQADHTRTTLQALQ 629 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 +G+++T+DDFGT S L+YL P D +K + S +T + + +AI+ +II +A +++ Sbjct: 630 ALGVAVTVDDFGTGYSSLAYLKRYPLDKIKVDRSFVTDTPADSEDVAIVTAIIQLAHSLQ 689 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +A+ + + L R+GC+ Q +A P+ + L+ + Sbjct: 690 LQPVAEGVETAEQLALLQRLGCELAQGFGIAPPMDAQRAREWLRAQ 735 >gi|229092786|ref|ZP_04223924.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] gi|228690584|gb|EEL44365.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] Length = 911 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 159/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + K + + E +T+ Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFKCMEKSFVIYEHTLTL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 900 Query: 951 KLLKE 955 LLK+ Sbjct: 901 TLLKK 905 >gi|229157325|ref|ZP_04285403.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] gi|228626052|gb|EEK82801.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] Length = 883 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 159/724 (21%), Positives = 315/724 (43%), Gaps = 26/724 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + LA+ +I +K + LI + FI+ + Sbjct: 228 EDHNSHKNYFIVNPIIGKKALAAFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + + L L + V + S+ + ++ Sbjct: 288 HSIVRMQNTS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKHKLASALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +Q + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASIQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + +N ++ +D D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKKVIKSAKKTEN-EFALLYLDFDRFKAINDTLGHSAGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + +SI P + E +T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEYALFELCNQLFESIEKPFVIHEYTLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNAVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NAIQNEELFLLYQPQVNSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + W + I +N+++K+ + + + + ++ T S + L Sbjct: 696 WTLEQACEQMKRWHS-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLANTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNKCQFIQGYYYSKPIHTHAFT 874 Query: 951 KLLK 954 +LL+ Sbjct: 875 ELLE 878 >gi|224824277|ref|ZP_03697385.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] gi|224603696|gb|EEG09871.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Lutiella nitroferrum 2002] Length = 718 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 147/590 (24%), Positives = 256/590 (43%), Gaps = 26/590 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + S + V+ D + +GL Sbjct: 139 IGMMIDNTDRRQAEHAVEEQLNFTSQLIETIPSPVFYKDEAGRYLGCNEAFEHYIGLPRE 198 Query: 444 SMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 + G R+ H D+ F G YE V++ D ++ Sbjct: 199 ELIGKSVFDISPRHLAERYHAADQALFDA---------PGTQTYEAEVQSTDGTLKNVVF 249 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + S G + +G+ DIT++K+S + I A D LT +PNR+ FL+RL ++ Sbjct: 250 YKATFNKSGGQLGGLVGVILDITDRKRSEKTIWHQANYDLLTELPNRRLFLERLQQGIEH 309 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + +M ID+D++K++ND+LG VGD +L +RI + ++ ++ARL G+ F Sbjct: 310 AKGSGSA-LALMFIDLDRFKEVNDMLGHKVGDQLLSQAGQRIADCVRETGLVARLGGDEF 368 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 +IL + + I A ++ ++++ P L V+ASIG + +L NA Sbjct: 369 TVILENLSQPTPIEQVAQSIIETLSKPFQLGPDVAYVSASIGVTLYPKDAQDMDTLLINA 428 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMYHAK G N F S R+ + DL A+ +L + Y PI+ L I Sbjct: 429 DQAMYHAKALGKNRFCYFVPSIQAIFAERLQLGHDLRSAMAQGQLDVYYQPIVDLATGHI 488 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-----N 790 V EAL++W HP+ G IS ++F+ IAE++ +I I ++ R A + Sbjct: 489 VKAEALVRWHHPRRGWISPAQFIPIAEDIGLINGIGDWVFRRAAGMAKRLWESGCSGTPA 548 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 P+ I IN + + E + + I + +E +++ L + Sbjct: 549 GAPLQISINKSPRQFFTGHAHETWIDHLQEIGLPAECIAIEITEGLLLDERPDVTSKLQQ 608 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 R+ G+ ++LDDFGT S ++YL + D +K + S + T AI +II M+ Sbjct: 609 FRRAGVQVSLDDFGTGYSAMAYLKRLDIDYLKIDQSFVRDMTSTPSDRAITEAIIAMSHK 668 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + ++A+ + L+ GCD+ Q + L + KLL +R+P Sbjct: 669 LGLRVVAEGVETREQRDLLSAAGCDFGQGYWFSRALPEDEFFKLL-QRWP 717 Score = 48.8 bits (115), Expect = 0.005, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 34/109 (31%), Gaps = 3/109 (2%) Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + +A + G + G + + R + +D + +Y F Sbjct: 53 DNRFLYANTHLAELFGYTQAELCGTL-GPMDLTAPEFRHIAKRAIDRRINNEATTSRYSF 111 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 D + + + + G IG+ D T+++++ + Sbjct: 112 DGLCKDGRRIQVEVFGIRTEFA-GRPA-IIGMMIDNTDRRQAEHAVEEQ 158 >gi|328553762|gb|AEB24254.1| sensor protein [Bacillus amyloliquefaciens TA208] Length = 801 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 165/776 (21%), Positives = 308/776 (39%), Gaps = 43/776 (5%) Query: 209 FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL----SSS 264 RS + + ++ + + G L+ VN+ + S A ++ Sbjct: 35 LKTGIRSKLWLIAGSVIMGFGIWSTHFVGMLAVYVNMHMNYEAVPMVSSLGAAISGSFAA 94 Query: 265 LIIFLFMYLHWNRWH-AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 L I L NR V + + +S M + ++ + Sbjct: 95 LYIVSRRILTLNRLITGSVFMGAGISLMHYMGMSAISRVMIMYNPFLFCFSILIAIAASF 154 Query: 324 Y---FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP----------A 370 +K + +F+ M T + Sbjct: 155 VSLKVFFGLAVKKPTEHLTFQKIISSVFMGAAVSGMHYTGMMAASFYADTRRPSSDMEIH 214 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG------ERQSLAVLGSGDIVWDWDIV 424 V I ++I + ++ + Q D +R + + D ++ Sbjct: 215 SFHLSVFITLIIFCFQMLLFFSSHFDRQFFRHDERMKDHEQRFQSLIKHNIDPIFILSPS 274 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + + A + S +NW +I +T ++ L ++ Sbjct: 275 GKILYSNEAGAEM----IHSFGLDSQNWRRHIS----SPLKTYFKQVKKEQQA-LHFDAD 325 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 ++ D ++ + P+ NG Y+ I D+T+Q+++ + I A D+LT +PNR Sbjct: 326 LKT-DIGLFYINVTFIPVLVDNGLDSVYV-ICKDMTKQRQAEKEIHRMAHYDSLTDLPNR 383 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + + RLT +L+ + +L V +D++++K IND LG VGD +L S R+ ++ Sbjct: 384 RHAVQRLTEVLEKKHSHGHLTV-VFFLDLNRFKVINDALGHNVGDRLLQSAAERLSSIIP 442 Query: 605 FPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 +ARL G+ F IIL + I D A + P + E E+ + SIG A Sbjct: 443 DNGFIARLGGDEFIIILTDARSEDDDIDDLAKQIIMQFEKPFIVQEHELITSVSIGIAVS 502 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELY 721 E++K A++AMY +K R + + + + ++ I+ +L A+E Sbjct: 503 PKDGSDGMELMKKADMAMYASKDRNKSKYKYYSAQIGEKEAKKLRIEMELREAIEKKRFV 562 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L Y P D+ I G+EAL++ + +F+ AEE +I + +++ R Sbjct: 563 LHYQPQYSSADQLITGVEALLRVAGADGKLQNPGDFIQAAEETGLIIDLGKWIITEACRQ 622 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W ++ + INI++K EL +Q ++ P+ ++ +ES+ M + Sbjct: 623 AKEWHEKGYH--FPVAINISAKQFQSEELVPFIQKTLTHYKLPPALLEAEVTESMTMEDR 680 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899 E S+ +L L ++GIS+++DDFGT S LSYL P +K + S + K I Sbjct: 681 EHSKKVLTALTELGISVSIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDLQLHPKSAQIT 740 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +II M + ++A+ + + K L GCD++Q + + PL I +LL E Sbjct: 741 GAIIAMGHQLSLLVVAEGVETAMQKKLLDEKGCDFLQGFYFSRPLPPEEIEELLHE 796 >gi|171059444|ref|YP_001791793.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6] gi|170776889|gb|ACB35028.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptothrix cholodnii SP-6] Length = 751 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 143/634 (22%), Positives = 256/634 (40%), Gaps = 33/634 (5%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 +W + L M +T L + Q + + I ++ G+ + ++ + + + Sbjct: 91 LWLLPLPMLVTG-LALALWQLWIPTVGLSIGLVTGWLLTRN-QELRSARMALQHERGQAD 148 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + D V D P + G + G L D L Sbjct: 149 ATLQAITDSVITVDTGARVQYLNPSAERLAGHSLAEARGHAVGTLFQWDEPDAQTLEQAL 208 Query: 469 DSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSN--------------------- 506 + RR ++ R++A + + I P+ Sbjct: 209 AECLQERRVVQVGLALRLKAPQGE-RQVQIIASPVFERQIESGLSGDRLDRPLRRAPADH 267 Query: 507 --GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + +D+TE ++ + + A D LTG+PNR DRL + + Sbjct: 268 DRDRVTGAVLALSDVTEALRAADKLQHEATHDALTGLPNRALLSDRLQHAVLGAQA-GQR 326 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 V+ ID+D++K+IND LG GD VL + R+ + + D LAR G+ F ++L Sbjct: 327 SVAVLFIDLDRFKRINDSLGHRHGDAVLKEVASRLQQCCRAHDTLARWGGDEFVVLLEDV 386 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + +A A M S+ + + + E+ SIG A + +L A+ AMY Sbjct: 387 PSRDAVAARAAQMIDSVTLEFAIDQVEVACGCSIGIAMAPQDGVAVDALLAMADTAMYRG 446 Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RGG E + + ++ L +E L Y P + L ++VGLEAL+ Sbjct: 447 KSRGGKRFEFYASEMPSWTREWLALETRLRHGLETQSFVLHYQPQVNLKTGQLVGLEALL 506 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W P F+ + EE +I I +++ + + WRDQ P + + +N+++ Sbjct: 507 RWRQPDGELWLPGRFLPVTEETGLILPIGEWVIREATQQLARWRDQGL-PLVPVSVNVST 565 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + LD L + + + + +KL +ES M + R LL LR +G+ + +DD Sbjct: 566 RQCLDRRLVQVVAEALLCSGIDAGLLKLEVTESTAMADLGHLRGLLVELRALGVQVAMDD 625 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LS+L + D +K + S + AI+R+ I +A + ++A+ + Sbjct: 626 FGTGFSSLSHLKHFQIDQIKIDPSFVRDISRDANGAAIVRATIALAHGLGLPVVAEGVES 685 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 E + L+ CD Q A +S+ +L Sbjct: 686 EEQMAFLSAHHCDIAQGFLYARAQDSDSVASMLS 719 >gi|196038459|ref|ZP_03105768.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] gi|196030867|gb|EDX69465.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] Length = 908 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 160/725 (22%), Positives = 315/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YLH + + + I ++ Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLHNHLSTETITLLRLLYRIPILLIAIAGSIS 250 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEKTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + TV + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEETVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + K + + E+ +++ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDDDSLFELCNQLFKCMEKSFVIHEQTLSL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 659 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 897 Query: 951 KLLKE 955 LLK+ Sbjct: 898 TLLKK 902 >gi|196034048|ref|ZP_03101458.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|195993122|gb|EDX57080.1| sensory box/GGDEF family protein [Bacillus cereus W] Length = 908 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 157/725 (21%), Positives = 312/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L + + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKKFIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 897 Query: 951 KLLKE 955 LLK+ Sbjct: 898 TLLKK 902 >gi|229012929|ref|ZP_04170094.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] gi|228748183|gb|EEL98043.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] Length = 883 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 159/725 (21%), Positives = 316/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + ++ I ++ Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 227 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V + + L +I +K + LI + F++ + Sbjct: 228 EDDNSHKNYFIVNPILGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + R+ ND + L + V + S+ + ++ Sbjct: 288 HSIV--RMQNDTLTKRLQV----FNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L + + T + ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + +S+ P + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFESMEKPFVIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG + + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGISIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + ++ T S + L Sbjct: 696 WTLQQACEQMKRWHA-LGYSHLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + E + I+++II +A + ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 815 TCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYANAFT 874 Query: 951 KLLKE 955 KLL+ Sbjct: 875 KLLEN 879 >gi|229123265|ref|ZP_04252469.1| Sensory box/GGDEF [Bacillus cereus 95/8201] gi|228660041|gb|EEL15677.1| Sensory box/GGDEF [Bacillus cereus 95/8201] Length = 911 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 900 Query: 951 KLLKE 955 LLK+ Sbjct: 901 TLLKK 905 >gi|228947411|ref|ZP_04109702.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812264|gb|EEM58594.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 885 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 157/725 (21%), Positives = 312/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 228 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L + + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKKFIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 696 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 874 Query: 951 KLLKE 955 LLK+ Sbjct: 875 TLLKK 879 >gi|49478361|ref|YP_037814.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329917|gb|AAT60563.1| sensory box/GGDEF family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 911 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 900 Query: 951 KLLKE 955 LLK+ Sbjct: 901 TLLKK 905 >gi|144898885|emb|CAM75749.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 953 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 143/653 (21%), Positives = 264/653 (40%), Gaps = 17/653 (2%) Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 + L + + L + G +A +D L Sbjct: 306 VMIVGFLVAVGAAAWLWLALGRTIRPLTRIAEIADRIQKGEAVAQIPIIDGRSEAHILSV 365 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDG---ERQSLAV---LGSGDIVWDWDIVRDR 427 L +V + A I + LA S + + Sbjct: 366 SLNRLVSTLADRNADLAAANTALEDDIRRREALEQELRLAATYYEASAEGIVVTVADGTI 425 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + I G + G + L +D F + + G + E R Sbjct: 426 ASVNDAFCRITGYQRHEVLGKTTSLLKSGVQDD--EFYADMWQLLR-DTGHWEGEIWNRR 482 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D + + I + +G+I Y+ +D++++K + E I+ + D LTG+P R Sbjct: 483 KDGRTFPEYLTINAVR-RDGEITHYVAQFSDLSDRKAAEEKIVQLSTHDTLTGLPKRIVA 541 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 ++RL+ ++ + D L ++ +++D ++ND LG GD VLV +R+ +LL+ D Sbjct: 542 MERLSGLISEARRDGRL-VALIYVNLDGLNRVNDALGHHGGDRVLVETAQRLRQLLQPAD 600 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 LARL G+ F II + A + + + + E++ +TA IG A + Sbjct: 601 ALARLGGDEFLIISSRFMVMAEAEALARQILDACSQAFFVDEKDTYLTARIGIAFYPRDG 660 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVE-NSELYLVY 724 E+++N+ A AK +GGN F + R + +L A+ + + + Y Sbjct: 661 EDPLELIRNSHAASVRAKEQGGNIYRIFTRDMDDEAVARHALDAELRQAMNSDDQFKVFY 720 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P++ I+G EAL++W +P G + F+ +AE +I + +L D Sbjct: 721 QPLVNAQSGRIIGAEALVRWFNPTRGLVPPDRFIPLAESNGLIVPMGRKILATACADGAR 780 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 +R F+ +N+A+ D E + +S P +++ +E V+GN Sbjct: 781 FRKHIG-SDFFMAVNVAAAQCADPGFLETVSKCLSDAKLPPHCLEVEITERTVVGNNPTI 839 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSI 902 + LR+ L++DDFGT S LSYL PF T+K + S + G E+ A++ +I Sbjct: 840 TAFMTALREAESKLSIDDFGTGYSALSYLRQYPFTTLKIDRSFVMGIGDVEQDDALVLAI 899 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I MA + +IA+ + + L GC+ +Q + P+ + + L+++ Sbjct: 900 IHMAHALGLEVIAEGVETTEQQEFLRDAGCETLQGYLLGKPMPADEFMALVQK 952 >gi|255523664|ref|ZP_05390631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium carboxidivorans P7] gi|255512719|gb|EET88992.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Clostridium carboxidivorans P7] Length = 973 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 135/561 (24%), Positives = 267/561 (47%), Gaps = 18/561 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 ++ + S ++ +A+ G+ VW++D+ + + I+G + + + Sbjct: 413 TEKLESLRQKYQIAIQGTNSAVWEFDMEDETIYFLEGFKNIIGKSIEKKENIYKTLRKLL 472 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D + ++ + + + +++ W++IR + + ++N D+ GI Sbjct: 473 SAEDEKKLIKEVSEYIHTEKKEIHIQVQIKDNLGNLKWVLIRGKGIFDNNNDVKLINGIV 532 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT K+ E I A+ D+LT +PNR+ ++ L + + +M++D+D + Sbjct: 533 LDITSIKEQEEYIRYIAYHDSLTNLPNRRKLMEILEDDISKNK-----YGALMLLDLDNF 587 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG GD VL ++ ++ + ++R G+ F I++ E + I ++A Sbjct: 588 KGINDTLGHLYGDKVLKKVSEKLQYIKDEKMFISRFGGDEFLILIQDEKDIAIIENYANQ 647 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + + +EI ++ S+G + S++L NA++AMY K++G N+ F Sbjct: 648 IINVFKNKLVIEGQEIYLSCSMGVTLYPFDSNKVSQLLMNADMAMYKVKNKGKNNYMFFN 707 Query: 697 VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + IK + L A++ +L L+Y P + ++VG EAL++ +IS Sbjct: 708 EEMTEKLQEKIKVEGILRDAIKKEKLKLLYQPQVCTFTGKVVGFEALLRLKDK---HISP 764 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++F+ +AEE +I I ++ + I W+ + I IN + K L D E + Sbjct: 765 AQFIPVAEETGLIIEIGRWVTKEAVNQINRWKKKGLDIK-PISINFSPKQLNDLNYIEFL 823 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + + + I++ +ES+ + E++ + RL+ +GI ++LDDFGT S L+YL Sbjct: 824 ENTLKEVSVEAKYIEIEITESIFLEEKEKNIAFINRLKSLGIKISLDDFGTGYSSLNYLT 883 Query: 875 YIPFDTVKFNGSLMTGSTE----KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 ++P D +K + SL + + + + ++ S+I +AK++ +IA+ I K L Sbjct: 884 FLPVDKIKLDKSL---NDKFLEFENVKVIDSLIFLAKSLNLEVIAEGIEDVAQYKRLKSA 940 Query: 931 GCDYIQDSHVASPLGFNSILK 951 GC YIQ + PL K Sbjct: 941 GCHYIQGYLFSKPLEVEDAEK 961 >gi|121996867|ref|YP_001001654.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Halorhodospira halophila SL1] gi|121588272|gb|ABM60852.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halorhodospira halophila SL1] Length = 836 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 155/648 (23%), Positives = 276/648 (42%), Gaps = 17/648 (2%) Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382 ++ + + A + + + I +I + G L + + + Sbjct: 179 LVVTPDGTVRYANPSAANLFARDSTALIGAVIGLPIGGPDAQEIGLRSPAGELRTVEMRV 238 Query: 383 GFTV----IQHVLATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 H+L ++ I ++ R ++ + + + D + +T P Sbjct: 239 REIRWHEQPAHLLNLRDVTERKHIETELRRAAIVFEEAHEAILVTDAEQRVITANPAFTE 298 Query: 437 ILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + G + G L H +F T +D + ++G E R D Sbjct: 299 MTGYTEQEVLGKDLALLRSGFHDE---SFYTAIDDALA-KQGYWTGEMWNRCRDGTTFAT 354 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 ++ +R + + G + Y+ + DI+ K+ + D LTG+PNR F DRL L Sbjct: 355 LVTVRAIYDDAGHLTHYLAVLADISRLKEYQSQLERIMHSDPLTGLPNRLVFQDRLHQAL 414 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 ++ V+ +D++ K IN LG AVGD +L L R+ L +ARL G+ Sbjct: 415 -VANQKQTGFFAVLSLDLNDLKAINYSLGHAVGDAILQQLAERLRNALCEEHTVARLGGD 473 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 FG++L+ ++ ++A + K + P + +R I + ASIG A + ++++ + Sbjct: 474 EFGVLLLGVRDASEVAAITEDLSKGLDEPFQIADRAIPIAASIGIAVYPEQDAGAADLFQ 533 Query: 676 NAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A AM+ AK G S ++ +RV + +L A+ L L Y P I L Sbjct: 534 QANAAMHQAKREGVSYRFFSEDLTEQARERVQLGSELREALNQGALELHYQPQIDLSSGA 593 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 VGLEALI+W HP G IS F+ +AE + ++ + ++LE+ R W D Sbjct: 594 WVGLEALIRWHHPVQGWISPERFIPVAERIGLVTTLGAWVLEQACRQGRIWLDAGFEFG- 652 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N A+ +L +L E + A + + +++ +E +++ L LR Sbjct: 653 RLGVNFAAPELSAPDLAERVLAALDRARLPARYLEIEVTERLLVDPDPEVIQQLQLLRNH 712 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912 G+++ LDDFGT S LSYL +P D +K + S + G + AI ++I + +N+ T Sbjct: 713 GVTVALDDFGTGYSALSYLRDLPVDRLKIDRSFVDGLPDDERTLAIAQAIAGLGRNLGFT 772 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 IIA+ + + L +GC + Q P I L FP Sbjct: 773 IIAEGVETPAQREALIGIGCPWAQGFLFGRPAPVAGIEA-LAPHFPRT 819 Score = 47.3 bits (111), Expect = 0.014, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 36/149 (24%), Gaps = 23/149 (15%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + Q + E+ + V P A + S + Sbjct: 145 RRRRAEQDQKRIHQALLEREEQLHRLFENMTEGVLVVTPDGTVRYANPSAANLFARDSTA 204 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G + G E +R+ + + +R+R + Sbjct: 205 LIGAVIGL---------------------PIGGPDAQEIGLRSPAGELRTVEMRVREIRW 243 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNA 533 + D+TE+K + A Sbjct: 244 HE-QPAHLLN-LRDVTERKHIETELRRAA 270 >gi|170749100|ref|YP_001755360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170655622|gb|ACB24677.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 960 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 131/577 (22%), Positives = 253/577 (43%), Gaps = 29/577 (5%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-------MHGPI 449 + + R A+ + +D + + I GL G+ + Sbjct: 398 ERRLTQTNLRLDAALDTMSQGLCLYDGQSRLMVVNRRYSEIYGLPPGAVVPGMTALEVLS 457 Query: 450 RNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + H D + G Q F+ ++ + + R ++G Sbjct: 458 ASLAAGNHPGCDLEALLRQQRDAFSN--GAWQTHFQEL-SNGRIVAIDRR----EAADG- 509 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 ++ D+TE++++ I A D LTG+PNR + ++ + + D V Sbjct: 510 --GFVATYEDVTERRRAEARIAFMAHHDMLTGLPNRVAVGQQIDVAVAQAGRDQG--FAV 565 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 ID+D ++ +N+ LG +GD++LV++ R+ ++ D +ARL + F ++ + Sbjct: 566 FAIDLDDFRPVNETLGHGIGDELLVAVANRLTACVREIDCVARLGADEFIVVQRGVDRPE 625 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A A + + + P +L I+V +IG S + ++LKNAE+A+ K Sbjct: 626 DAAILARRIIEVVGAPYSLTHHTISVGLTIGITLAPSDGSNADKLLKNAEVALDRGKTEA 685 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 F + ++ DL A+ + Y PI L + I G EAL++W+H Sbjct: 686 RGAFRFFEPAMDARLIARRIMERDLRDALAREAFEVYYQPIYSLETDRICGFEALLRWNH 745 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P G +S +EF+ IAEEL +I + ++L R + W D+ + + +N+++ Sbjct: 746 PVRGFVSPAEFIPIAEELGLIVPLGEWVLRRACEEAARWPDE-----LKVAVNVSAVQFT 800 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 L ++ + +T R++L +E+V++ NP + +L LR +G+ + +DDFGT Sbjct: 801 SASLVTAVREALRRTGLPGRRLELEITETVLVANPGATTAILHSLRALGVRVAMDDFGTG 860 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL PFD +K + S + K I+R++I + ++ T A+ + E + Sbjct: 861 YSSLSYLRSFPFDKIKIDQSFVRDLCVKDGTDFIVRAVIGLGASLGMTTTAEGVETEAQL 920 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 L GCD +Q + P+ + + +++ ++ Sbjct: 921 AHLRAEGCDEVQGYLFSRPVPVSEVASVIRRWNGALR 957 Score = 43.0 bits (100), Expect = 0.26, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 49/171 (28%), Gaps = 18/171 (10%) Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 +LD+ I G L+ + L SQ ++ + A+ S + V Sbjct: 246 GQLDDRIPTGGRDGLSRLLDAVAAMRSTIRALTLREVSQRRVAEA-LVTDALQTSREGVV 304 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--RDNFRTILDSFVGYRRG 477 D + I L I D RD R +LD Sbjct: 305 VVDADGRIALANAQALRFF----VGLDAAIEAGLSLTRIADQPRDKHREVLDDC------ 354 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 FR A D R +S S +I + +DI+ K+ Sbjct: 355 -----FRALARDGDIRLADGRWLRVSRSATRQGGFIAVCSDISVLKEQERR 400 >gi|320322881|gb|EFW78972.1| sensory box protein/response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 705 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 145/585 (24%), Positives = 264/585 (45%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + +++D +K IN+ G +GD+VL+ ++RR+ E L D L R+ G Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ + +R ++ +P L + I +TASIG A + S E++ Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+A AM AK G + + R+ ++ L AV+ +VY P + L D Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + GLEAL++W P IS + F+ + E L +I + ++++ + I W+ Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + L+ Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699 >gi|163850380|ref|YP_001638423.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163661985|gb|ABY29352.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 714 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 149/692 (21%), Positives = 285/692 (41%), Gaps = 33/692 (4%) Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + +A + + R+T+ ++Y ++ R++ Sbjct: 28 GRHLLRTGSGLCLTVAGFAATALMASLSAEPTLRLTVVGGATILALVLVYLILRRLARSL 87 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF------TVIQHVLA 392 +A+ + L G L+ ++ + A Sbjct: 88 TRAMQAAEGIALATAPAVALRTPPACASGEAPLPDGRRLLADRPRLGDGADPAILTDIAA 147 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---PI 449 + R + A+ +D + I L G++ + Sbjct: 148 LKLREDALSDRIARLNAALDTLSLGFLLYDRDHRLLVVNRRYHEIYRLPPGAVTPGMSAL 207 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---FRVRA-ADNQFHWMIIRIRPMSNS 505 + D+ + D + + + +++ AD + + I+P++ Sbjct: 208 EVLRSNVGTGDQPD--RSEDECIAEIGVMMGADAVPTQIQHLADGRVVAVE--IQPIAGG 263 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 ++ I + TE+ + I A D +T +PNR +R+ + + + Sbjct: 264 -----GFVAIYEEATERWNAETRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETG-- 316 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D +K++ND LG AVGD++L ++ R+ L+ D +ARL G+ F II S Sbjct: 317 FAVLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVA 376 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A A + ++ P L + V SIG A + +++ A++A+Y AK Sbjct: 377 TPADAATLAQRILDVVSAPYALTHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAK 436 Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G F ++ + R ++ DL A E L Y PI L +E I G EAL++ Sbjct: 437 DDGRGVFRFFEAQMDARLQARRALELDLRAAFEAEAFDLHYQPIYDLAEERISGFEALLR 496 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G +S +EF+ +AEE+ +I + ++L R R+ +W D + + +N+++ Sbjct: 497 WTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREASNWPD-----GLKVAVNVSAA 551 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L +QA ++++ S R++L +ESV++ N + +L LR +G + +DDF Sbjct: 552 QFTSIALIGTVQAALAESGLSARRLELEITESVLLVNGSATVAILHGLRDLGARIAMDDF 611 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL PFD +K + S T + I+R+++ +A ++ T A+ + Sbjct: 612 GTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSLASSLGMTTTAEGVETP 671 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L GCD +Q + P+ + + LL Sbjct: 672 EQLAWLREEGCDEVQGYLFSPPVPASELPALL 703 >gi|317049538|ref|YP_004117186.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pantoea sp. At-9b] gi|316951155|gb|ADU70630.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. At-9b] Length = 949 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 138/529 (26%), Positives = 252/529 (47%), Gaps = 14/529 (2%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I R+ + + G+ + + + D F ++ D + R + Sbjct: 424 ITREILMVNDKAEQLFGI--NKLLIMHKRPHECMSAELSDYFNSLADIAL--RSEGIHTR 479 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 ++ + R ++ + + I D+T+Q+++ I A DNLT +P Sbjct: 480 EQLLLTAGGERILHTRATTIAGKDLRQNFVMLIVEDVTDQREADARIHHMAHHDNLTSLP 539 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F +L+ L + T + +D+D +K +ND LG +GDD+L ++ +R+ + Sbjct: 540 NRILFRQKLSEAL-RADTQGGYITATLCLDLDNFKNVNDALGHQIGDDLLRTVAKRLRNV 598 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L+ D LAR+ G+ F I+L + N+ + A A + ++I P+NL ++V S+G A Sbjct: 599 LRDHDTLARIGGDEFAIVLPNIRNADEAAVVAQRLIEAIRPPVNLEGHNLSVGLSVGIAL 658 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSEL 720 + + T ML+ A++A+Y AK G N E F + R +I+ DL A+ +L Sbjct: 659 SSQAANTPEHMLRCADMALYEAKRNGRNRYEHFTLEMDDLARSRRVIENDLRDAISGRQL 718 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y PI ++ I+G EAL++W HP G I ++F+ IAEE +I + + L R Sbjct: 719 KLYYQPITDGNEKGIIGYEALMRWHHPIKGLIMPNDFIPIAEETGLIHLLGAYALYEACR 778 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + SW + + +N++ ++ L ++ + ++ +P R+++ +ESV++ + Sbjct: 779 EAASWEGEQ-----SVSVNLSPLQFKNSSLISVVEGALRESGLAPHRLEVEITESVLLDD 833 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898 + L L+ +G+ + LDDFGT S LSYL PFD +K + S + + R AI Sbjct: 834 ALGNIRTLQNLKALGVQIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMGDSREALAI 893 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 +R+I M+++++ I A+ + L GC Q P Sbjct: 894 IRAITGMSRSLDIQITAEGVESSEQFARLREEGCTLFQGYLFGRPQPSE 942 Score = 64.6 bits (156), Expect = 8e-08, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 4/152 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGD-IVWDWDIVRDRVTTTPDIAT 436 LIG+ I + E+ L V G D ++ D+ V Sbjct: 236 GKLIGYAKITRDCTEQQALLRAQREQEKTFRLLVTGVRDYAIYMLDVQGRVVNWNAGAQR 295 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G S + G + +R + + + + GR + E D W Sbjct: 296 AKGYRSEEIVGQHFSVFYG--AQERQSKAPDANLGIALKTGRFEDEGWRYRKDGSAFWAH 353 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + I + N G ++ + I D+TE+++ + Sbjct: 354 VVIDAIHNEEGRLIGFAKITRDVTERREHEQQ 385 Score = 58.4 bits (140), Expect = 6e-06, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 3/127 (2%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 L V G D ++ D+ + G + + G ++ + DR N Sbjct: 137 FRLLVEGVTDYAIYMLDLDGNVENWNAGAQRAKGYVAEEIVGQ--HFSRFYSAQDRLNHI 194 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + ++ GR + E D W + I + + G ++ Y I D TEQ+ Sbjct: 195 PEKNLGIAFKTGRFEDEGWRYRKDGSAFWAHVIIDAIRDDTGKLIGYAKITRDCTEQQAL 254 Query: 526 LEGILCN 532 L Sbjct: 255 LRAQREQ 261 Score = 42.6 bits (99), Expect = 0.37, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 3/115 (2%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 L V D ++ + G + + G N+ + +DR N Sbjct: 9 YRLLVQSVLDYAIYMLKPDGTVASWNAGAQRAKGYTAEEIVGK--NFALFYSEDDRKNGA 66 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + GR + E D + I + + G++L + I D T Sbjct: 67 PLRGLANATATGRFETEGWRYRKDGSAFSAHVIIDAIRDQYGELLGFAKITRDCT 121 >gi|254559634|ref|YP_003066729.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254266912|emb|CAX22711.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with PAS sensor; putative membrane-associated protein precursor [Methylobacterium extorquens DM4] Length = 714 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 152/693 (21%), Positives = 291/693 (41%), Gaps = 32/693 (4%) Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 R + G +A A + ++ T + + A+I+ +I + Sbjct: 29 RHLLRTGSGLGLTVAGFAAIALIASLSAEPTLRLTVVGGAAILALVLVCLILRRLARSLT 88 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF----TVIQHVLA 392 + A + + + + P+ L+ +G ++ + A Sbjct: 89 RAMQA-AESIAPATAPAVALRTLPACASGEAPPSNGLRLIADRPRLGDGADPAILTDIAA 147 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---PI 449 + R + A+ +D + I L G++ + Sbjct: 148 LKLREDALSDRIARLNAALDTLSLGFLLYDRDHRLLVVNRRYHEIYRLPPGAVTPGMSAL 207 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---FRVRA-ADNQFHWMIIRIRPMSNS 505 + D+ + D + + + +++ AD + + I+P++ Sbjct: 208 EVLRSNVGTGDQPD--RSEDECIAEIGVMMGADAVPTQIQHLADGRVVAVE--IQPIAGG 263 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 ++ I + TE+ + I A D +T +PNR +R+ + + + Sbjct: 264 -----GFVAIYEEATERWNAENRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETG-- 316 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D +K++ND LG AVGD++L ++ R+ L+ D +ARL G+ F II S Sbjct: 317 FAVLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVA 376 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A A + ++ P L + V SIG A + +++ A++A+Y AK Sbjct: 377 TPADAATLAQRILDVVSAPYALAHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAK 436 Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G F ++ + R ++ DL A E L Y PI L +E I G EAL++ Sbjct: 437 DDGRGVFRFFEAQMDARLQARRALELDLRAAFEAEAFDLHYQPIYDLAEERISGFEALLR 496 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G +S +EF+ +AEE+ +I + ++L R R+ W D + + +N+++ Sbjct: 497 WTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREASGWPD-----GLKVAVNVSAA 551 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L +QA ++++ S R++L +ESV++ N + +L LR +G + +DDF Sbjct: 552 QFTSIALIGTVQAALAESGLSARRLELEITESVLLVNGSATVAILHGLRDLGARIAMDDF 611 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL PFD +K + S T + I+R+++ +A ++ T A+ + Sbjct: 612 GTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSLASSLGMTTTAEGVETP 671 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L GCD +Q + P+ + + LL+ Sbjct: 672 EQLAWLREEGCDEVQGYLFSPPVPASELPALLE 704 >gi|237746600|ref|ZP_04577080.1| signal transduction protein [Oxalobacter formigenes HOxBLS] gi|229377951|gb|EEO28042.1| signal transduction protein [Oxalobacter formigenes HOxBLS] Length = 733 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 133/580 (22%), Positives = 257/580 (44%), Gaps = 21/580 (3%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q ++ +D + V + + I +LG G Sbjct: 157 QDQKENSPPARTSLNDTATYKAILDTVPVGVMQVSPDKRILYANRSICEMLGYTPGFF-- 214 Query: 448 PIRNWLPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 + +H R + E ++ + + I +S Sbjct: 215 -PERFNDLLHPTVQSRPEVANSWQDLW-HNTSHFFIELALKGKNGIYILTENDISLKLDS 272 Query: 506 NGDILRYIGIANDITEQKKSLEGIL---CNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + I QK E + D LT +PNR + + + Sbjct: 273 GNKPAYAL-----IVTQKSGKEITSFGPHLSLFDPLTSLPNRNYSDTLINNAMRRADRSG 327 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++++D++++K +N+ LG GD++L + R+ L+ D + R+ + F I+L Sbjct: 328 K-NVAILLLDVNRFKMVNESLGHEFGDELLKLIANRLKTTLRKADSVIRMGNDEFVIVLE 386 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + + +++ PI+L +IT++ SIG + + +LK A++A Sbjct: 387 NVRKNEDVNLVVRNIFNALSQPIHLGHHDITISVSIGCSLYPQDSSDIDTLLKYADIAKT 446 Query: 683 HAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N + F + + + + +L A+E +E + Y P + L +I GLEA Sbjct: 447 DAKRSGSNMLRFFNRNMNITVLDQLLAESNLLRAMEKNEFLMYYQPRLCLKTGQIAGLEA 506 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+WDHPK G + +SEF+++AE++ +I I F L+ + R +I+W+ Q PI + IN+ Sbjct: 507 LIRWDHPKKGILPASEFIVLAEKIGLIHRIGEFALDNVTRQLIAWQKQ--DRPIPVAINV 564 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +S +L +L + + ++ +T + +L +ES ++ + +R R L +R +GI++++ Sbjct: 565 SSSELYGAKLKKALSGILRETGLASRLFELEITESKLIEDLDRVRHTLKEIRDMGIAISI 624 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P D +K + S + T+ +I+ + I +A ++ +IA+ + Sbjct: 625 DDFGTGYSSLSYLSALPVDYLKIDSSFIADVTQNHNVASIVETTIRLAHSLNMQVIAEGV 684 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 ++ L CD IQ + PL + K ++ P Sbjct: 685 ETPEQLQFLVAHECDQIQGYLCSRPLPAPELEKFMERFRP 724 >gi|42782831|ref|NP_980078.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] gi|42738758|gb|AAS42686.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] Length = 910 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 157/725 (21%), Positives = 318/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 254 EDHNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTASSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQVFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTNELLGETC--FSIILDEDKHKLACALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G IL + DIT KK E I AF Sbjct: 426 ESASLQLSSQY--KDGFTYFLYVTIVPIM-VDGQILGSYIMVKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F +++ + + + + + + + + E +++ Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTVLIENYTDEDSLFELCNQLFECMEKSFVIHEHTLSL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + +++ R+ +++DL Sbjct: 602 SLSIGIAIYPYSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIANKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 662 NAIQNEELFLLYQPQVDSESNDIIGAEALIRWNHPELGIISPYEFIPIAEETLQIIPIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + + W + I +N+++K+ + + + A ++ T S + L Sbjct: 722 WTLQQACQQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + ++ L + C +IQ + + P+ +S Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVRFLQKNNCQFIQGYYYSKPIHADSFS 900 Query: 951 KLLKE 955 LLK+ Sbjct: 901 TLLKK 905 >gi|124268236|ref|YP_001022240.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum PM1] gi|124261011|gb|ABM96005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylibium petroleiphilum PM1] Length = 778 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 142/577 (24%), Positives = 270/577 (46%), Gaps = 17/577 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F + + + + ER + + S + + + + I + G Sbjct: 215 FVRVTDITKHRLAERAVRESEERLAKFMQASAEGIL-FHRNGTVIDINEPICELTGYTRD 273 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G R ++ + + L + +E + + + R + Sbjct: 274 EVIG--RQTAEFLAPDHLPRAQQALAT-----GAEAAWESVALGRAGERIPVELITRSIM 326 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 NG+ LR + I DI E+ + I A D LTG+PNR +F +L L S + Sbjct: 327 -RNGERLRLV-IVRDIRERVAAQARIHHLAHHDALTGLPNRAAFGLQLER-LTASHRSGD 383 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ ID+D +K+IND LG VGD +L ++T RI + L+ D++AR G+ F +++ Sbjct: 384 AQIALLFIDLDHFKRINDSLGHLVGDLLLQTVTARITDNLRADDLVARFGGDEFMVLIPG 443 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + I P+ R I+V+ SIG + + T +E++++A+ AMY Sbjct: 444 VTDRSVVEQVAGKLLAVIEAPLEAAGRSISVSPSIGVSLFPEHGRTPAELIQHADAAMYM 503 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK RG +V+ F +S D ++++ L A+E L Y P +R D +VG+EAL Sbjct: 504 AKARGRANVQFFDPVVASAAYDALVVESQLAQALETGAFELHYQPQLRSGDGRLVGVEAL 563 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G + +F+ +AEE ++ I ++L R W Q + I +N++ Sbjct: 564 IRWHHPERGLLLPDDFIPVAEERRLMLPIGQWVLREAMRCARRWHAQGLE--LPISVNLS 621 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 S + + L+ + + + ++L +E ++M + + + L +L+ +G+ +++D Sbjct: 622 SMQFQQRGFVDSLAELLRQEQVNGAWLELELTERMLMDDLDEVKATLAQLKALGMRISVD 681 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L +L +P D VK + S + AI+++I+ + +++ T+IA+ + Sbjct: 682 DFGTGYSSLGHLKELPIDKVKIDRSFVQDVPQNADAAAIVQAIVQLGRSLGMTVIAEGVE 741 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E + L +GC+ +Q +A PL + R Sbjct: 742 TEAQERFLRELGCEELQGLRIAPPLSEADLQLWASRR 778 Score = 44.6 bits (104), Expect = 0.098, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 4/150 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGL 440 + + V A + + + ++ ++ A+ LG Sbjct: 86 LCLCALHDVSARKRTELALREQTTQLRVLADNVPALIAYYEQQGFRCTFANRHYASALGW 145 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 ++ G + R ++ V R ++ YE + A + W+ + + Sbjct: 146 TPENILGRTAA--EIVGERGWQQIRPYIERVVETR-AQVSYERELTDAAGRPQWLEVDVL 202 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGIL 530 P + G++ DIT+ + + + Sbjct: 203 PNFDDEGELSGAFVRVTDITKHRLAERAVR 232 Score = 43.4 bits (101), Expect = 0.20, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 7/112 (6%) Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + +A G + WL + R LD R + E Sbjct: 6 DARLLAVNEPLAACTGWHRDA-AADGEAWLDRLSAPSRRELLKALDHL--DTADRFRLEL 62 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 + R + W+ R ++ + +D++ +K++ + Q Sbjct: 63 QFRRPGGEVGWLECDARWNRDTE----LCLCALHDVSARKRTELALREQTTQ 110 >gi|30263750|ref|NP_846127.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47529169|ref|YP_020518.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186595|ref|YP_029847.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|30258394|gb|AAP27613.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47504317|gb|AAT32993.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180522|gb|AAT55898.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] Length = 911 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFS 900 Query: 951 KLLKE 955 LLK+ Sbjct: 901 TLLKK 905 >gi|313681523|ref|YP_004059261.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313154383|gb|ADR33061.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 700 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 144/576 (25%), Positives = 249/576 (43%), Gaps = 16/576 (2%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPI 449 L S + S + + +++W + + TI G + Sbjct: 131 LQAAELSFLLNSKHQEIEDILSSIDEVIWYIHNQTLSLQYVNKAVETIFGFTKETFLSDT 190 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 W IH DR + ++ + ++ FR+ D + W+ RI + Sbjct: 191 TLWQQQIHPEDRSLVQMFFETLAPGQSQEIR--FRILHCDGEVRWLNSRIHNHP----KL 244 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 +IGI +DIT K E I A+ D LT +PNR +L + + N +M Sbjct: 245 NLFIGITSDITCSKAQSEEIAFLAYHDPLTHLPNRAKLKLQLENRFEHA---PNSPFALM 301 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +K IND +G +GD +L+ ++RRI E + D AR G+ F I+L +S Sbjct: 302 FLDLDNFKNINDTMGHKIGDKILIEVSRRIRETVGKYDFYARFGGDEFVILLQD-ADSAS 360 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 I A + + P L E E ++ASIG + + +++K+A+ AMY AK +G Sbjct: 361 IDLTAQKLIQVFKEPCTLNETEFFLSASIGIVLYPDDALNGDDLIKHADTAMYEAKKKGK 420 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + S R + I+ + + + L + P+I + G EAL++ HP Sbjct: 421 NQFAYYHTSMERAIHHFMYIESLIREGLTQNLFELYFQPLIDSKTLRMEGYEALLRLKHP 480 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G I + +AE I I +L + I + R P F+ IN+++K L Sbjct: 481 HKGFIPPDTIIPVAEANGDIHLIGDKVLSQACDFIDALRALQ-DEPFFVAINVSAKQLQR 539 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 N+ + + ++ S +K+ +ES VM N L +L+ GI ++LDDFGT Sbjct: 540 NKFVQELFDYLALRSIPSSYLKVEVTESTVMENIAVVSQQLSQLKAGGIRISLDDFGTGY 599 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S +YL +P DT+K + S + I+ +I +A + + A+ + Sbjct: 600 SSFAYLAQLPIDTLKIDKSFILALFKDNSNRHIVEAISNLAHALGMNVTAEGVEEAQHYD 659 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 L D +Q H+ PL + IL +++ P+++ Sbjct: 660 FLLENNIDTLQGYHLCRPLPKDEILNNMQKILPVLR 695 Score = 43.4 bits (101), Expect = 0.21, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 37/121 (30%), Gaps = 7/121 (5%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + D + D + + ++G S + G L D F + Sbjct: 10 VLNYLPDGIIMLDERGVILFANDAFSEMVGYKSDLLLGLNMLSLL----ADITVFTECIA 65 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + L E D + +R + +++ R+ ++T+ + + + Sbjct: 66 KVMKEGQ-SLDAETDFLHRDGHIVQAVKSVRMIRHNDH--TRFFVNVRNLTDLIQFNKEL 122 Query: 530 L 530 Sbjct: 123 R 123 >gi|229031170|ref|ZP_04187180.1| Sensory box/GGDEF [Bacillus cereus AH1271] gi|228730209|gb|EEL81179.1| Sensory box/GGDEF [Bacillus cereus AH1271] Length = 797 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 160/774 (20%), Positives = 308/774 (39%), Gaps = 54/774 (6%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + S+ Sbjct: 53 ILFLSIGDVFLSFIFPIIDLLLLLLGVSLIFRLAIFNAKSK----LFIFILVLTGLSITD 108 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + H + + + + ++ P T+S + + +I Sbjct: 109 YLYFYLQDDLSHRSLILLRCLYRVFLLFI-SIAATIPRSTSSRRDYFIINPTFGKKLLVI 167 Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 + I + + ++ + + V ++I + Sbjct: 168 F-----------------PYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHTIVRM 210 Query: 388 Q---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 Q S + + ER D + D+ Sbjct: 211 QNKDLTETLKVFNNQLEQKVSKRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDLNGT 270 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + + +LG S ++ G D+ L +G R + RV+ Sbjct: 271 VLNINQSGSMLLGKDSAALIGKEC--FSIFLDEDKPELEVALK--MGKRCSSSSLQLRVK 326 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + G + DIT K+ + I AF D +TGI NR Sbjct: 327 NNNEKDIHFWYVTIVPIMIEGQTFGSYIMVKDITRMKQQQDEINYLAFHDTVTGIGNRIF 386 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F L ++ + + ++ ID++++K IND LG A+GD VL + R L Sbjct: 387 FQQELDRSIERVQKTQD-KFGLLYIDLNRFKNINDTLGHAIGDKVLKEVANRFRTCLPPT 445 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 +AR+ G+ F II+ ++ ++ D + + P + + ++ SIG A + Sbjct: 446 IHIARIGGDEFAIIVHNKT-EQQLLDLCGILFRITEEPFVINQHSFYLSLSIGIALYPFG 504 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724 ++ +L++A++AMY AK G N V + S + R+ +++DL A+EN+EL+L+Y Sbjct: 505 GTNATTLLQHADIAMYSAKEEGSNAVCIYDETLSQKITRRLQLEQDLPNAIENNELFLLY 564 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P + +++G EALI+W HP+ G IS EF+ IAEE+ I +I + L++ + Sbjct: 565 QPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEEISQIISIGKWTLQQACSQLKE 624 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + + IN+++ + + + + + I + I L +E + M + + + Sbjct: 625 WHSA-GYTNLKMGINLSAIEFEQKDFVQTIISTIEEIRVPAHLIDLELTERIAMVDEKET 683 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 L L L+ G+ L++DDFGT S L+YL P DT+K + + I+++I Sbjct: 684 LLKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 743 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +A + +IA+ + + + L + C IQ + + P+ + LK L Sbjct: 744 ISLAHTLNMKVIAEGVETKKQLTVLQQNACYLIQGYYYSKPVNEDEFLKFLSRE 797 >gi|254683545|ref|ZP_05147405.1| sensory box/GGDEF family protein [Bacillus anthracis str. CNEVA-9066] Length = 891 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 174 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 233 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 234 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 293 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 294 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 347 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 348 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 405 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 406 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 462 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 463 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 521 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 522 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 581 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 582 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 641 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 642 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 701 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 702 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 760 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 761 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 820 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 821 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFS 880 Query: 951 KLLKE 955 LLK+ Sbjct: 881 TLLKK 885 >gi|229097965|ref|ZP_04228915.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] gi|228685402|gb|EEL39330.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] Length = 815 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 162/759 (21%), Positives = 311/759 (40%), Gaps = 30/759 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 68 ILFLSIGDVFLSFIFPILDLLLLLLGVTLIFRPAIFNTKSK----LFIFILVLTGLAITD 123 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V + + + + Y ++ + + L Sbjct: 124 YLYFYLQDDLSDRSVILLRCLYRVFLLFIAIAATIPKNASSKRNYFIINPTFGKKILVIF 183 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 184 PYLAVTVLIGFTLKEQTSSSTLIMGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 237 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q + S + + ER D + D + + +L Sbjct: 238 NNQLEQTVSQRTMDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQAGSMLL 297 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G D+ + + LQ + + W + Sbjct: 298 GKDSAVLIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 354 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ + I AF D +T I NR F L + + Sbjct: 355 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELEKSIKRA 413 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + ++ ID++++K IND LG ++GD VL + R L LAR+ G+ F Sbjct: 414 QKTQD-ELGLLYIDLNRFKTINDTLGHSIGDRVLKEVANRFRTCLSPTIPLARIGGDEFA 472 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 473 IIIHNQT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 531 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 532 IAMYSAKEKGNNAVCMYDETLSRKITRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 591 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 592 GSEALLRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQKACRQLKEWHSA-GYSNLKM 650 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + S I L +E + M + + + L L+ G+ Sbjct: 651 GINLSAIEFEQKDFVQIIISTIEEIGVPASSIDLELTERIAMVDEKETLSKLKALKSYGV 710 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++I+ +A + +I Sbjct: 711 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIETSTDGDEIIQTIVSLAHTLNMKVI 770 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+ + + + L + C IQ + + P+ + L L Sbjct: 771 AEGVETKGQLTVLQQNACYLIQGYYYSKPVNEDEFLMFL 809 >gi|302188802|ref|ZP_07265475.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 705 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 140/585 (23%), Positives = 262/585 (44%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L + + D + + E ++R Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + +DID +K IN+ G +GD+VL+ ++RR+ L D L R+ G Sbjct: 297 MTQAAIS-RWKLAALTVDIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ +R ++ P + + + +TASIG A + S E++ Sbjct: 356 DQFALILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM A+ G ++ + R+ ++ L AV N +VY P + L + Sbjct: 416 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + I GLEAL++W P +S + F+ + E L +I + ++++ + I W+ Sbjct: 476 DRICGLEALLRWPRPGHTGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGL 535 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 536 -FQVAVNISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTAHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + + L+ Sbjct: 655 LQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLDELETFLRS 699 >gi|34497033|ref|NP_901248.1| sensory box/GGDEF family protein [Chromobacterium violaceum ATCC 12472] gi|34102890|gb|AAQ59254.1| probable sensory box/GGDEF family protein [Chromobacterium violaceum ATCC 12472] Length = 712 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 134/567 (23%), Positives = 265/567 (46%), Gaps = 12/567 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHG-PIRNWLP 454 ++ + +R + + + + +++ R V + G + ++ G Sbjct: 139 TESLRLSEQRFRALIEQAPEAIMVYNMDTGRFVDANRQAEKLTGRSLQTLVGISPAALYA 198 Query: 455 YIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + + + S + +E V+ D +R+ + + G++LR Sbjct: 199 PEQPDGLPVAESVSMHSEQAQKGDIPPFERIVQRPDGSAIPCEVRLSKLPSETGNLLRV- 257 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DI+ + + E I A+ D LTG+ N+ L++L+ + LS V++I++ Sbjct: 258 -SYIDISSRVAAQEKINRLAYFDTLTGLHNQSGLLEQLSALYSLSWQQPG--FAVLLIEL 314 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 +K INDV G +GD +L + +R+ + + ARL G F +L + + Sbjct: 315 GDFKFINDVYGNRIGDLLLCHVAQRLQQAIGPHGHAARLGGVEFAALLTGVAGAAEAEAI 374 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A M +++ P + E ++VTASIG + E++ A++A+Y AK + V+ Sbjct: 375 ACRMLDAVSEPFPVDEMMLSVTASIGISLGPEHGADGRELMARADMALYRAKEKSARRVQ 434 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + +RV +++ L A+++ EL L Y P I L +VG+EAL++W HP+ G Sbjct: 435 VYEEELGQQMRERVELEKSLRHAIDHGELVLHYQPQIELSTRRVVGVEALVRWQHPQKGM 494 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I F+ IAE+ +I + ++L R + W+D+ + + +N++ D+EL Sbjct: 495 IPPMRFIPIAEQSGLILPLGRWVLREACRQLKVWQDKGRD-DLRMAVNLSVAQFTDHELP 553 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + ++ +T SP ++L +ES M +P++S ++ R R +GI ++DDFGT S L+ Sbjct: 554 DFVADVLKETGVSPRHLELEITESCTMLSPQQSIGMMERFRAMGIHSSIDDFGTGHSALA 613 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + S + EK A+ +I +A + ++A+ + + + L+ Sbjct: 614 YLTRFPVDTLKIDQSFIRNISNDEKGTALCDTIAYLAHRMGLQVVAEGVETQQQLTFLSS 673 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 + D +Q + PL + ++ Sbjct: 674 IHVDVVQGYLLCKPLPAVEAEAFILQQ 700 >gi|297537734|ref|YP_003673503.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297257081|gb|ADI28926.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 713 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 132/580 (22%), Positives = 262/580 (45%), Gaps = 18/580 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++ + + ++ Q + R S D W+ D + G Sbjct: 148 IMRIKLDKKLIELNEEKQKLIESEARFRDFAEASADWFWESDAQLKI-------QALAGS 200 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 +G + + H + L S + Y + ++ + + Sbjct: 201 PAGLGFYSLVDLAQTCHSHSPSEMLETLKSH----KHFSDYVVHFIDESGKLVYLRVSGK 256 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ +++ + Y G+ D++E + A D LTG+PNR F RL+ + ++ Sbjct: 257 PIFDADKRFIGYRGVGRDVSEMIALNRRVEFLASHDELTGLPNRNLFKQRLSHAVVKASR 316 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 N + ++ D+D +K +ND LG GD +L+ T+RI E ++ D L RL G+ F +I Sbjct: 317 T-NSQVLLLFFDLDHFKLVNDTLGHEAGDLLLMMATKRISECIRASDTLCRLGGDEFVMI 375 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + + + P L ++ + T SIG + + + +L A+LA Sbjct: 376 MED-ASPQDAHRLVRDIIAKFTTPFELYQQRVYCTISIGVSVYPDDTVDPQSLLVFADLA 434 Query: 681 MYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G N E + + + ++ + A++ ++L+L Y P + ++ ++G+ Sbjct: 435 MYRAKQNGRNCFEFYTTNLNFIAHQWLDMENGIRHALKENQLFLEYQPQVENTNQNLIGI 494 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP+ G IS EF+ IAE+ +I I ++LE + I +W DQA P + I Sbjct: 495 EALLRWQHPERGLISPLEFIKIAEQSSLINQIGDWVLEAVCLQIRTWLDQAYQVP-RVSI 553 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI+++ L + L + ++ + +K + + + +E ++ + + + + +++ G ++ Sbjct: 554 NISARHLRSDSLIQALKTVPAKYQIPTNMLCIEITEHALLDDIDIVKKNMRFIKEAGFNI 613 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 +LDDFG S L YL D VK + + + G +E+ I+++I+ +A + I+A+ Sbjct: 614 SLDDFGMGHSSLMYLKRWSVDEVKIDRTFIDGLQNSEEDRVIVKAIVALADALSLDIVAE 673 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I + + GC +Q + PL I++ K + Sbjct: 674 GIENQFQADIVKASGCKVVQGFFYSIPLPAAEIVRWFKSK 713 >gi|320329810|gb|EFW85798.1| sensory box protein/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 705 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 145/585 (24%), Positives = 264/585 (45%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + +++D +K IN+ G +GD+VL+ ++RR+ E L D L R+ G Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ + +R ++ +P L + I +TASIG A + S E++ Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+A AM AK G + + R+ ++ L AV+ +VY P + L D Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + GLEAL++W P IS + F+ + E L +I + ++++ + I W+ Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + L+ Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699 >gi|251798594|ref|YP_003013325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Paenibacillus sp. JDR-2] gi|247546220|gb|ACT03239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Paenibacillus sp. JDR-2] Length = 633 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 137/630 (21%), Positives = 274/630 (43%), Gaps = 19/630 (3%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 Y + ++ + F + +++ L + + I F Sbjct: 13 YRASQPQVMLRTAALTIAIVAVLFCAAAL-YRNADPVLEWTSSMIAVLAIAITAILFARN 71 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 ++ F I L + D D + + LG + G Sbjct: 72 GQMIGFRNFHTPIVETL----LQSEAVPLAILDRD--GVIMEMNVASSNTLGYIRQDLLG 125 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 P + R++ + +LD + + + + + I PM + Sbjct: 126 KPLA--PLLEPGSRNSLQEMLDHALQGKSEQRNIN--ITHRSGFPLELQIISSPMMRED- 180 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 +++ + ++ D++++K+++E I A+ D++TG+PNR F R+ L + D + Sbjct: 181 EVIGTVIVSQDLSDRKRNIERIRYMAYYDDMTGLPNRTLFHIRMNESLAFAREHDRM-IG 239 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 + +D+D++K +N G GD +L+ + R+ + I+AR+ G+ F ++L + Sbjct: 240 LCYLDLDRFKLVNASFGREFGDMLLLQVAERLTRAIGEQGIVARMEGDEFALLLQDIESE 299 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ + + M +I P L + +T S+G + + +LK A++A+ K Sbjct: 300 EQLMELSRGMLHAIDEPFELKGFPLHITGSLGAVTSLVKEDDGYSLLKKADIALVKVKES 359 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + S+ +R+ ++ ++ A++ E L+Y P L+ +VG+EAL++W Sbjct: 360 GKNDCMLYSESWSNSSFERLTLQHEMYRAIQRKEFILLYQPQYDLVSGMMVGVEALVRWR 419 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G I EF+ IAEE MI I ++LE R +W+D PP+ + +N++ + Sbjct: 420 HPAKGMIPPGEFIPIAEESGMIVQIGDWVLEEACRQNKAWQDAGL-PPMPVSVNLSIRQF 478 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + +++ KT P + L +ES+ M + L L +G+ +++DDFGT Sbjct: 479 VQQDLASKVASVLEKTGLKPEYLDLEITESMTM-DTGHVSRCLLELTDMGVGISVDDFGT 537 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S YL P D +K + S + I+ +II MA N+ +IA+ + Sbjct: 538 GYSSFHYLKNFPIDRLKIDRSFVRDIQQDPSDAEIVAAIIAMAHNLNIQVIAEGVENAEQ 597 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ L + CD +Q + P+ I ++L Sbjct: 598 MEFLRKHNCDEMQGYFWSPPVSSTDIEQML 627 >gi|330988050|gb|EGH86153.1| sensory box protein/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 705 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 145/585 (24%), Positives = 264/585 (45%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKSFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELAHKTPAELG---EASMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + +++D +K IN+ G +GD+VL+ ++RR+ E L D L R+ G Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ + +R ++ +P L + I +TASIG A + S E++ Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+A AM AK G + + R+ ++ L AV+ +VY P + L D Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + GLEAL++W P IS + F+ + E L +I + ++++ + I W+ Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + L+ Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699 >gi|229151715|ref|ZP_04279916.1| Sensory box/GGDEF [Bacillus cereus m1550] gi|228631776|gb|EEK88404.1| Sensory box/GGDEF [Bacillus cereus m1550] Length = 828 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 163/760 (21%), Positives = 312/760 (41%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 81 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 137 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ Y+ + DIT K+ E I AF D +T I NR F L + + Sbjct: 368 IVPIMIERQTFGSYV-MVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W + + Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 663 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 723 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 823 >gi|229061348|ref|ZP_04198695.1| Sensory box/GGDEF [Bacillus cereus AH603] gi|228717963|gb|EEL69608.1| Sensory box/GGDEF [Bacillus cereus AH603] Length = 883 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 159/725 (21%), Positives = 316/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + ++ I ++ Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 227 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V + + L +I +K + LI + F++ + Sbjct: 228 EDDNSHKNYFIVNPILGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + D+ L L + + V + S+ + ++ Sbjct: 288 HSIVRMQNDS------LTKRLQVFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L + + T + ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + +S+ P + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFESMEKPFVIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPSGGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + ++ T S + L Sbjct: 696 WTLQQACEQMKRWHA-LGYSHLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFLTMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + E + I+++II +A + ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 815 TCEDGMEIIKTIITLAHTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYTNAFT 874 Query: 951 KLLKE 955 KLL+ Sbjct: 875 KLLEN 879 >gi|39996139|ref|NP_952090.1| sensory box/response regulator [Geobacter sulfurreducens PCA] gi|39982904|gb|AAR34363.1| sensory box/response regulator [Geobacter sulfurreducens PCA] Length = 799 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 140/626 (22%), Positives = 268/626 (42%), Gaps = 38/626 (6%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIV-----ILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + M D+D ++ A G V + + +++ + Q + + Sbjct: 174 VVMMTALG--DSDAVREAFDAGATFFVPKPINLSTLPEHLTYLVRSSRVLQELHESEAQN 231 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR--NWLPYIHINDRDNFR 465 + D++ + G A + G +R + F Sbjct: 232 RALLNAIPDMMLHVCREGTILDF--RAGN--GCAYAAFGGNLRGRTIADLLPPGAAAQFM 287 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + + E+ + R ++N G +L I D+TE+++S Sbjct: 288 AQVGHALAT-GTMMVCEYELEGPGG---LNTHEARIVANGTGTVL---AIVRDVTERRQS 340 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I A D+LTG+PNR F + L +L + D + ++ +D+D +K IND LG Sbjct: 341 EEMIRYLAHHDSLTGLPNRIFFGEMLELVLSRARRDGK-QVAILFVDLDDFKLINDTLGH 399 Query: 586 AVGDDVLVSLTRRIGELLKFPDILA------------RLSGNRFGIILISENNSLKIADF 633 A GD +L +R+ ++ D +A R G+ F + L + ++ + Sbjct: 400 AAGDHLLREAAQRLKGCVRSSDYVASGAESGLCGNIARFGGDEFILSLGNLDSVDDVVAV 459 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + + + EI V+ SIG + + + +++NA++AM+ AK GG Sbjct: 460 TQRIISEFSREFRIDGHEIFVSVSIGISMYPDDAEDTGSLVRNADMAMFAAKEEGGPSFR 519 Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F ++ R+ I+ L A+E E+++ Y P + L EI G EAL +W HP+ G Sbjct: 520 FFTRGMNEAAQQRLSIELSLRKALERGEIFVHYQPKVDLSCGEITGFEALARWHHPELGL 579 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I F+ +AE+ +I I ++L +W D+ + + IN++S L Sbjct: 580 IPPDTFIPLAEKNGLIVRIGEWVLRAACAQARTWIDE-GFSDLCMAINLSSHQFTSGNLT 638 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ ++ +T PS ++ +E ++M E++ +L LR +G+ +++DDFGT S L Sbjct: 639 SMVKEVLDETELPPSCLEFEITEGILMERTEKTMRILSELRDMGVRISIDDFGTGYSSLG 698 Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P +TVK + S + + AI+++II +A+N+ ++A+ + + L Sbjct: 699 YLKRFPVNTVKIDRSFVREIDSPHEDAAIIKAIIAVARNLNLQVVAEGVESHRQTEFLLA 758 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 GC+ Q P+ + +L+ Sbjct: 759 HGCNEAQGFLFGKPVHPDEASLMLRA 784 >gi|307945786|ref|ZP_07661122.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4] gi|307771659|gb|EFO30884.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4] Length = 961 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 140/673 (20%), Positives = 284/673 (42%), Gaps = 43/673 (6%) Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF---IGLWMAITKRLDNDII 367 I + L + Y + R + I + + DI Sbjct: 309 WLIFIGFSALLAFAAVAYLLARQVTRPLTNITRALSGIAGGDFEGDVAGTGRHDEVGDIA 368 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDIVWDWDIVRD 426 + ++ + + T + D A+ + +D Sbjct: 369 RSVVLLQRSVKERDALRVRVHEKNRTLKAQETKLRDQNMLFDAALNNMSHGLCMFDATGK 428 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + + + G + + L LQ E R Sbjct: 429 LIVSNRRYGELFGHKDDQ-----------VQPGMTASQLEALQDGTEISGHELQGE-RHS 476 Query: 487 AADNQF------------HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + ++ +P+ + +I I+ DITE++++ + + A Sbjct: 477 TDNGDLLVSTSMLKLPSDRIVLKTNQPLVDG-----GWIEISEDITERQEARDRLAFLAR 531 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LT +PNR FL+ + +L ++ +D+D++K +ND LG VGD++L Sbjct: 532 HDPLTHLPNRVEFLEHMEALLSR-RRKKGGEFAILCLDLDEFKVVNDSLGHPVGDELLRQ 590 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + R+ E+ + +++ RL G+ F ++ + + + A + ++ P L + ++TV Sbjct: 591 VGIRLTEITENDELVVRLGGDEFAVVTELPVDRQSVDELARCIISQLSQPFQLADHQVTV 650 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712 SIG A + + + ++ K A+LA+Y AK G F +S S+R + L Sbjct: 651 GTSIGIAFAENDDLVADDLFKQADLALYKAKDDGRKTHRYFEPHMSEAVSERQALLNALR 710 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+ +++L L Y P + + ++ G EAL++W HP+ G +S ++F+ +AEE +I I Sbjct: 711 DAIAHNQLELHYQPQFEMENFQVCGFEALLRWHHPERGMVSPADFIPLAEETGLIVPIGA 770 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L W I + +N++ + L + ++ + +P R++L Sbjct: 771 WVLREACMQAAKWPS-----DIRVAVNLSPRQLKVAGFGAELVGALASSGLNPRRLELEV 825 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890 +E V++ + E +L + + +G+ +++DDFGT S LSYL PFD +K + + + G Sbjct: 826 TEGVLLQDSEEVLSILRQAKSLGVRVSMDDFGTGYSSLSYLRSFPFDKIKIDQTFVRSMG 885 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 +E+ +AI+R++I +AK+++ T A+ + + L +GC +Q + P+ + L Sbjct: 886 DSEEAVAIVRTVIELAKSLKMTTTAEGVETREMLDILKEIGCTDVQGFYFGRPMPLANTL 945 Query: 951 KLLKERFPLVKNT 963 +L+ E FP + Sbjct: 946 ELIGEHFPESHHA 958 >gi|326794453|ref|YP_004312273.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] gi|326545217|gb|ADZ90437.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] Length = 977 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 139/594 (23%), Positives = 268/594 (45%), Gaps = 25/594 (4%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 L+ + I + +R S+A + + D + + Sbjct: 401 FDALVTELNQARKRLLDESEEKIKTQLDRLSIAFETIPEGLCMTDAKGQLLLCNERFKAL 460 Query: 438 LGLASGSMH--GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHW 494 L + P R+ L + ++ + YE +R+ H Sbjct: 461 YELHKDEVQQGTPFRDVLRICN----RRGAKLIPNMSDGESRSYLYEKYRI----GAEH- 511 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 RI + + I + +DIT++K+ E I A+ D LT +PNR+ FLD + Sbjct: 512 -EKRIISVRTAETIEGGLISVHDDITQRKQQQEQIEHLAYHDTLTHLPNRRLFLDDCQGL 570 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + S D TV +D+D +KK+ND LG +GD +LV+++ R+ + R+ G Sbjct: 571 IRES--DHTPELTVFFMDLDLFKKVNDTLGHPIGDQLLVAVSERLKSNFSAYGQIYRVGG 628 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F +++ + ++ A + +++ P + + I + SIG + I +S+++ Sbjct: 629 DEFAMLIQGIEDISELQSLAQKIIGAVSSPYVIQKNHILIGVSIGISRAPIDGIDTSQLM 688 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+A+LAMYH+K G N F + D+ ++ L A+ N EL L Y P Sbjct: 689 KSADLAMYHSKEEGRNQYSFFVPEMSQAIKDKREMEMQLRDALSNGELELAYQPKWGFRS 748 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 E+ G EAL++W H G IS ++F+ IAEE +I I ++L + + W + Sbjct: 749 GEVEGFEALLRWPHKTRGPISPADFIPIAEETGLIVEIGEWVLLHACMEAMHWPN----- 803 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I + +N++ L + +++ ++++ P R++L +E +M + + + +L +R Sbjct: 804 DIEVSVNVSPIQFSAKSLLKDVRSALAQSGLPPERLELEITEGALMQDTDANLEILEAIR 863 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 ++GI + LDDFGT S L Y+ FD +K + S + +++ A+++++ + N+ Sbjct: 864 EMGIKIALDDFGTGYSSLGYIRRFSFDRIKIDKSFINDVLTSKDSQAVVQAVCGICANLN 923 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKNT 963 +A+ I +I + L + GC Q +A P+ + + L+ L K + Sbjct: 924 IESVAEGIEEQIQLDYLNKEGCSQAQGYLIAKPMKPEIVSEFLERPHRYLTKTS 977 >gi|229117233|ref|ZP_04246611.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] gi|228666133|gb|EEL21597.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] Length = 883 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 164/725 (22%), Positives = 317/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + + I ++ Sbjct: 168 PTVFNSKRKIYIFIFVLISSATFNYIYFYLYSHLANDTITLLRLLYRVPILLIAIAGSIS 227 Query: 304 PM---------VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 V + + L +I +K + LI + F++ + Sbjct: 228 DDYNSNKNYFTVHPKLGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLI- 286 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 +I + + + L + + S+ + ++ Sbjct: 287 RHSIVGMQNATLTKRLQAFNAQLEDKV-----TLRTSDLVHKSEALSEKQQKFESLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ T L+ Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSVLLGAPTNELLGETC--FSIILDEDKHKLLTALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + LQ + D +++ + I P+ NG I + DIT QKK E I AF Sbjct: 400 KSASLQLSSQY--KDGFIYFLYVTIVPIM-INGQISGSYIMVKDITAQKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + T N ++ +D+D++K IND LG + GD +L Sbjct: 457 HDAVTKIGNRAYFHKKLRKVIKNAQT-INSEFALLYLDLDRFKAINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L ++R+ G+ F I++ + + + + +S+ P + E+++ V Sbjct: 516 VAQRFQSCLPSHTYVSRIGGDEFTILIENYTDHDSLFQLCNELFESMKKPFVIHEQKLNV 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I +S +LKNA +AMY AK + + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDASTLLKNANVAMYDAKEKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + ++ T S + L Sbjct: 696 WTLQQACEQMKRWH-VLGYSHLKIGVNLSAKEFEQEDFVKSISFTLATTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K M+ Sbjct: 755 TERIAMMDERETLIKLRTLKNLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFMTMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + E + I+++II +A +E ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 815 TCEDGMEIIKTIITLAHTLEMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYSNAFT 874 Query: 951 KLLKE 955 KLLK Sbjct: 875 KLLKN 879 >gi|118592942|ref|ZP_01550330.1| hypothetical protein SIAM614_01931 [Stappia aggregata IAM 12614] gi|118434476|gb|EAV41129.1| hypothetical protein SIAM614_01931 [Stappia aggregata IAM 12614] Length = 944 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 138/575 (24%), Positives = 258/575 (44%), Gaps = 32/575 (5%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + A+ + +D + + A + L G Sbjct: 376 LRSQEAQLREQNVLFDAALNNMSHGLCMYDANGRLIVSNQRYAELFQLEPG--------- 426 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL-- 510 + L G + R D+++ + S+G I+ Sbjct: 427 --KVKPGMTAAQLATLQKVEAVETGDSAL-YESRLPDHRYASGSQSTEMVKISSGRIVLT 483 Query: 511 --------RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 ++ I+ DITE++++ + + A D LT +PNR F D+L +L+ Sbjct: 484 TRQPLAEGGWVAISEDITERQEARDRLAFLARHDLLTQLPNRIEFRDQLDMLLNQQMVKG 543 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ +D+D++K +ND LG +GD++L + R+ +L+ D++ RL G+ F I+ Sbjct: 544 G-EFAILCLDLDEFKTVNDSLGHPIGDELLRQVAERLRKLIGRKDVVVRLGGDEFAILTG 602 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + + A ++ I+ P + + EI + SIG + E+ K A+LA+Y Sbjct: 603 LPSRLKDVEELAQSVIWEISQPFQITDHEIVIGVSIGITIARADGTAGDELFKQADLALY 662 Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N F +DR + DL AV N EL L + P L D+ I G EA Sbjct: 663 RAKEDGRNTYRFFETDMGTAVNDRRELITDLRTAVANGELELYFQPQYTLADDRISGFEA 722 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W+HPK G +S ++F+ +AE+ +I + ++L R W D + + +N+ Sbjct: 723 LVRWNHPKRGMVSPADFIPLAEDTGLISQLGEWVLMEACRIAAKWPDH-----LRVAVNL 777 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + L + + + +T R++L +ESV++ + E L + + +G+ +++ Sbjct: 778 SPRQLRGHAFGPVLIDALVQTGLKADRLELEVTESVLLTDSEDVLDSLHQAKSLGVKVSM 837 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL PFD +K + S + ++ I+I++++I +A N+ T A+ + Sbjct: 838 DDFGTGYSSLSYLRRFPFDKIKIDQSFVRSMAYSDDSISIVKAVIELANNLNMTTTAEGV 897 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + LT +GC Q ++ P+ +S L+ Sbjct: 898 ETRQLLDMLTEIGCTEAQGYYLGRPMPVDSTEDLI 932 >gi|160896528|ref|YP_001562110.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160362112|gb|ABX33725.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Delftia acidovorans SPH-1] Length = 636 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 145/653 (22%), Positives = 270/653 (41%), Gaps = 35/653 (5%) Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371 L + + + + +L + + + A+ Sbjct: 1 MTLYVCAGLLWLWGVEWLLAHLQIPPEAAAQRRMLSSVTLV--------------LVTAV 46 Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRV 428 GG +L + G +A G ERQ LA V + + V D + Sbjct: 47 GGGWLLWRMRRGERTAHAAMAAG------READERQRLATAVVDNTMEGVVVTDARSRIL 100 Query: 429 TTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + +LG M G R + H D+ + + DS G Q E R Sbjct: 101 SVNSAFTRLLGYTEQEMLGKTPRMFKSGRH--DKAFYEAMWDSM--QATGHWQGEIWNRR 156 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + + + + + ++ G + Y+ + DI+ +K + A +D LTG+PN F Sbjct: 157 KNGEVFPERMSLSAVKDAQGKVTHYVCMFTDISAEKAREAQLEFLAHRDMLTGLPNSVRF 216 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 L + +A + VM+++ID++K +ND G A+GD VL + R+ + L D Sbjct: 217 TALLEDAVAEAAAEQGT-LAVMLLNIDRFKDVNDSYGHAIGDQVLRHIAARVHDSLGPQD 275 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN-LLEREITVTASIGFASWTSS 666 ++ R++G+ ++ + A + + P + + S+G + S Sbjct: 276 LIGRMAGDELAVLCKGMSERGDAIARARQLIAAAGQPWSSPDGLSVMAGVSVGICMYPSH 335 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVY 724 + ++L+ A A+Y AK R G F +R+ ++ L A++ L L + Sbjct: 336 AGNAQDLLQGAHAAVYGAKSRSGRAWCFFEEDMTSAARERLAMEARLRQAIDLGHLRLYF 395 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P I L +VG EAL++W P G IS + F+ +AE +I A+ L++L Sbjct: 396 QPQIDLATGRLVGAEALVRWLDPDEGLISPARFIPVAESSGVIGALGLWVLREACAQGRR 455 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 WRDQ P + I +N++ L ++ ++ T ++P ++L +ES + PE + Sbjct: 456 WRDQGL-PEMTIAVNVSLHQFLLTDIAGATADALAATGFAPHCLELEITESALAERPEEA 514 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 ++ RLR G+ L +DDFGT S L++L P D +K + + + +AI S+ Sbjct: 515 LAVMRRLRAQGLRLAIDDFGTGYSSLAHLKRFPLDLLKIDQGFIRDIPHSADDMAISGSV 574 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I + + ++A+ + + L GCD+ Q + PL + + + + Sbjct: 575 IALGHAMGLKVLAEGVETAEQLAFLRGKGCDFFQGYLCSKPLPAQAFGEWVSD 627 >gi|148259538|ref|YP_001233665.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidiphilium cryptum JF-5] gi|146401219|gb|ABQ29746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidiphilium cryptum JF-5] Length = 1114 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 135/600 (22%), Positives = 265/600 (44%), Gaps = 27/600 (4%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR- 427 + + L FT Q R + +G +++ + D Sbjct: 515 LLVELTANMTKALQAFTTRQERDDALMAH---SMSERRIDRLLAATGVVLYALALHGDEA 571 Query: 428 --VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 V + +I +LG A+G++ G + W ++H D + L G+ + +R+ Sbjct: 572 VLVDMSENIVDMLGYATGNIRG-LDWWRNHVHPEDLP--QAALGVPRTVESGQFVHRYRI 628 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R + + W+ ++ G+ + +G+ DITE++++ E I A D LT +PNR+ Sbjct: 629 RHQNGGYRWIHDEKTLQRDAAGNPVGIVGVWIDITERREAEEQIYRLAHIDPLTELPNRR 688 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 +RL +L + ++ ++ ID+D++K IND+LG + GD L +R+ + ++ Sbjct: 689 LLNERLREVLIEARRT-GVQGALLFIDLDRFKTINDMLGHSAGDSALRQAAQRLRQAVRA 747 Query: 606 PDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSI-AMPINLLEREITVTASIG 659 D +AR+ G+ F +++ + + A A M ++ A PI++ ERE + ASIG Sbjct: 748 ADTIARVGGDEFVVLIADAGSTVADAADHAATIARKMIDALTARPISIGEREYHLGASIG 807 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717 F + T +++ A+ AMY AK G V FR S S I++++ A++ Sbjct: 808 FTMFPKPDDTIDTLIREADTAMYQAK-AGEADVVMFRQSMHLSIVARHAIEDEIRSALKA 866 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 + + L + VG E L++ SEF+ IAE +I + ++L Sbjct: 867 GRFEIWLQDQVEL-GGKPVGAEVLLRLRDRDGRIAVPSEFIGIAESSGLIVPLGRWLLRE 925 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 + R + P + +N++ + D + A + + R+ L +E+++ Sbjct: 926 ACALLA--RAHRDRPDWRLSVNVSPRQFRDPAFVTDVIAALDISGVPADRLTLEITENLL 983 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI- 896 + + ++G L G+ ++DDFGT S L YL +P +K + + + Sbjct: 984 IRDTFEIARIMGILADRGVRFSVDDFGTGYSSLHYLRQLPIHEIKIDRGFIGQVPDDASS 1043 Query: 897 -AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 AI+ +I+ MA+ ++ ++A+ + + L GC +Q A P+ + L+ Sbjct: 1044 VAIVEAILAMARRLDLDVVAEGVETPEHVAFLKARGCPRMQGYFFACPIPVSE---WLER 1100 >gi|47568240|ref|ZP_00238943.1| sensory box protein [Bacillus cereus G9241] gi|47555068|gb|EAL13416.1| sensory box protein [Bacillus cereus G9241] Length = 909 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 158/724 (21%), Positives = 316/724 (43%), Gaps = 26/724 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + LA+ +I +K + LI + FI+ + Sbjct: 254 EDHNSHKNYFIVNPIIGKKALAAFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKHKLASALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 +Q + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 426 ESASIQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKKVIKSAKKTES-EFALLYLDFDRFKAINDTLGHSAGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + +SI P + E +T+ Sbjct: 542 VAKRFQSCLPSHTYLSRIGGDEFTILIENYTDEYALFELCNQLFESIEKPFVIHEYTLTL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNAVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 662 NAIQNEELFLLYQPQVNSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + W + I +N+++K+ + + + + ++ T S + L Sbjct: 722 WTLEQACEQMKRWHS-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLANTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNKCQFIQGYYYSKPIHTHAFT 900 Query: 951 KLLK 954 +LL+ Sbjct: 901 ELLE 904 >gi|324327640|gb|ADY22900.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 906 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 156/724 (21%), Positives = 315/724 (43%), Gaps = 26/724 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLH--WNRWHAKVGYITFSGIACIAILFCMS- 300 + +SS+ +++ YL+ + + + + + + Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTEAITLLRLLYRIPILLIAIAGSIS 250 Query: 301 ------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 Y +V I + L +I +K + LI + FI+ + Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG+ + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGVPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNKCQFIQGYYYSKPIHTHAFT 897 Query: 951 KLLK 954 +LL+ Sbjct: 898 ELLE 901 >gi|71909307|ref|YP_286894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71848928|gb|AAZ48424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 930 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 140/590 (23%), Positives = 270/590 (45%), Gaps = 14/590 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTT 430 L + +L+ + + +G + +LA S + + D + V Sbjct: 330 ELSISGLLVLLAFMLAGILIRQIQRGRRVAEHQLNLAEAVFANSVESILVTDADQRIVEV 389 Query: 431 TPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 P I G + + G R H D F + + E R + Sbjct: 390 NPAFLRISGYSRSEIIGQHPRILKSGRH--DAAFFARMWQEL--NANDTWEGEVWNRRKN 445 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 + + ++ I + + +G ++ Y G+ D+++QK + D LT +PNR+S+L Sbjct: 446 GEIYPALLSIAVVRSQDGKVVNYTGMIFDLSQQKTVEALLDQLRTFDGLTALPNRESWLS 505 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 L L + + + R +++ +D+D++K IND +G +VGD VL+ R+ L+ DI+ Sbjct: 506 ALEQQLANAKRNSS-RFSILQLDLDRFKAINDSMGYSVGDQVLIEAAERVKVSLRKYDIV 564 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL GNRF I+L + I + + A P + ++ASIG A + + + Sbjct: 565 ARLGGNRFSILLNEIVDPQTIGGICEKLLTAFARPFQMGGINAHISASIGVAIFPNDGLD 624 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPI 727 S ++ AE A+Y AK G N + + ++ L +A++ +E +VY P Sbjct: 625 SKTLMMAAESALYSAKADGRNLYKYYSHEMNEMGTHLFKLERMLRVALDRNEFSVVYQPQ 684 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + + E+VG+EAL++W +P+ GN+S+ +F+ +AEE +I +I +++ +W+ Sbjct: 685 VNAKNGELVGVEALLRWHNPELGNVSAVQFIPVAEETGLIVSIGEWVMRAACHQARTWQT 744 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + I + +N++++ N+L +Q ++ +T ++L +E ++ +P + + Sbjct: 745 ELGFE-IPVAVNLSARQFRRNDLLASVQTILDETGLPNRLLELEITEGSLIVDPIGAIDI 803 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905 + L +GI LDDFGT S L+YL P + +K + + + E AI +II + Sbjct: 804 MRGLNCLGIKTALDDFGTGYSSLAYLKAFPLNRLKIDRAFVRDLPDNESDCAISNTIIAL 863 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 N+ ++A+ + E L GC Q P+ + + L+ Sbjct: 864 GLNLNMEVLAEGVETEAQRDFLAAAGCQVFQGYLFGKPMSGEDLTQRLQS 913 >gi|289623551|ref|ZP_06456505.1| sensory box protein/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649158|ref|ZP_06480501.1| sensory box protein/response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330867854|gb|EGH02563.1| sensory box protein/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 705 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 144/585 (24%), Positives = 263/585 (44%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMD 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + +++D +K IN+ G +GD+VL+ ++ R+ E L D L R+ G Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSHRLSECLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ + +R ++ +P L + I +TASIG A + S E++ Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+A AM AK G + + R+ ++ L AV+ +VY P + L D Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + GLEAL++W P IS + F+ + E L +I + ++++ + I W+ Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + L+ Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699 >gi|238063361|ref|ZP_04608070.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC 39149] gi|237885172|gb|EEP74000.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC 39149] Length = 722 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 138/611 (22%), Positives = 270/611 (44%), Gaps = 22/611 (3%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGY-----FSQGIFSDGERQSLAVLGSGDIVWDW 421 +Q L G + FT + + + + Q + R +G+ + Sbjct: 113 LQGGLAAGFAQALRDRTFTQQERIARSAWQARDIVEQALRDSEARFRAVFVGAAIGIGIA 172 Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 + + A +LG + + N H +D + + + ++ Sbjct: 173 GVDGQIIEVNQSFADMLGYSVAELRRT--NVASLFHPDDAAGMWELYQELIEGKHDAVRV 230 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E R D W + + + + +G + + DITE+ + + + A D LTG+ Sbjct: 231 EKRYYRKDGSVVWTDLAVSLIRHDDGRPRFTVAMIEDITERYELQQRLRFQALHDPLTGL 290 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR F + L +LD + + R V +D+D +K +ND LG +GD +LV + RR+ E Sbjct: 291 PNRTLFFETLGRVLDDAG--PDHRIGVCFLDLDGFKAVNDSLGHDLGDRLLVEIARRLAE 348 Query: 602 LLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 + ++AR+ G+ F I++ A +++ P+++ ++++ V+ASIG Sbjct: 349 CVAGHGHLVARMGGDEFVILVDGGEGIDDAVGVAEMALAAVSAPVHVGDQQLAVSASIGI 408 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS 718 S + ++SE+++ A+ +Y AK G + D + L A++ Sbjct: 409 VECPSGETSASELMRAADTTLYWAKAEGRGRWAVYDPERSARDIARSALVAGLPAALDRG 468 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 E + Y PI+ L+D +V +EAL++W HP+ G + +F+ +AEE +I + ++L + Sbjct: 469 EFVVHYQPIVSLLDSSMVAVEALVRWQHPELGLVGPDQFIGLAEETGLIVRLGEWVLGQA 528 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 RD +WR + + + +N+A++ D + E + + +T + ++L +ES VM Sbjct: 529 CRDAEAWRREFPEAKLVVSVNLAARQADDPAIVETVACALGRTGLPAALLQLELTESAVM 588 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS------- 891 G L +L ++G+ L +DDFGT S L+YL +P +K G + G Sbjct: 589 GTAGEPLRALHQLAELGVRLAIDDFGTGYSNLAYLRRMPIHCLKLAGPFVEGIRPGDADN 648 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + I+ +++ +A +E + A+ + + L + CD Q P+ I Sbjct: 649 PTDHRDERIVDALVRLAHALEMWVTAEAVETGAQAERLRSLRCDTGQGRWFGPPVPAAQI 708 Query: 950 LKLLK-ERFPL 959 L+ + P Sbjct: 709 TARLRGDHVPG 719 >gi|239825960|ref|YP_002948584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. WCH70] gi|239806253|gb|ACS23318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. WCH70] Length = 818 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 137/578 (23%), Positives = 248/578 (42%), Gaps = 20/578 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+G + Q + R + + + + + G Sbjct: 252 LLGIYMQVERKLFEKHKQALEVSENRFKRLAESIMEGIIVH-VHGKVIEANKAACRLFGY 310 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + L + L + L YE ++R D + ++ Sbjct: 311 VESELIHMPVQDLMIL---------ESLKKIEHNDQEEL-YEIQLRRKDGTIFPAEM-VQ 359 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + +G + I DITE+K + E + A D+LTG+PN+++ +T + + Sbjct: 360 REYDHDGRKVNVTAI-RDITERKNNEEKMHYIATHDDLTGLPNKEALHRAITEKIQEA-F 417 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D +M ++I K IND G +VGD VL+ + + +L R SGN F I Sbjct: 418 DRQEEVAIMFLEISGMKTINDFYGYSVGDQVLLQIVEEWKKRSCKDVLLGRWSGNEFIAI 477 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L K A + P+ + RE+ VT IG + + + +++ A++A Sbjct: 478 LSGST-KEKATVAANQFSEIADEPVIVEGRELYVTIKIGISLYPQDGMDPKTLIRKADIA 536 Query: 681 MY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 Y K ++ +++ ++ +L A+E E L Y P I+L + G+ Sbjct: 537 RYKLRQKPASQFLFFEEPMARVIQEKIGMERELRRALEKGEFELYYQPQIQLDTGMVTGM 596 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W+HP+ G IS F+ +AE+ MI IN +++ + + P + + + Sbjct: 597 EALIRWNHPEKGLISPYAFIPVAEQTGMIIPINEWVIRMACQQTKQLLNDF--PNLSVSV 654 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ + + + L+ +T P + L +E + + + ER+ +L RL+ IG+++ Sbjct: 655 NLSPYEFENRRFVHKLMKLLEETGLPPHHLDLEITERMTI-DTERAITILKRLKSIGVTI 713 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918 ++DDFGT S LSYL +P D +K + S + K+ AIL SII + NI ++A+ + Sbjct: 714 SMDDFGTGYSSLSYLTDLPIDRLKIDRSFVRNIRGKKEAILPSIIRLGHNIGVKVLAEGV 773 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E ++ L CD Q + A PL + + L E Sbjct: 774 ETEAEVAYLKDKHCDEAQGYYFAQPLSYKELKAFLYEH 811 >gi|89900767|ref|YP_523238.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89345504|gb|ABD69707.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 1355 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 144/552 (26%), Positives = 253/552 (45%), Gaps = 14/552 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTI 467 + + D + + I G + G L + T Sbjct: 531 VFAQGREGITVTDARGHIIMVNRAFSEITGYTQAEVLGQNPRILKSERQSPEFYLDMWTA 590 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L G E R D + + I + +S G Y+ +D++ K + Sbjct: 591 L-----TTSGHWAGEMWNRKKDGTVYPEWMAISALRDSQGLTTHYVASFSDLSTAKAAES 645 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I + D LTG+PNR DR L + T++++ ID + +ND LG + Sbjct: 646 RIQWLSQFDTLTGLPNRTLLQDRTALALSMVQRA-REPLTMLLVAIDHFGAVNDTLGHQL 704 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD++LV + RR+ + ++ D ++R+ G F ++L ++ A A + ++ P +L Sbjct: 705 GDELLVEMARRLSDSVREQDTVSRMGGKEFVLVLPG-TPAMGAAHLATELLWKLSRPCSL 763 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RV 705 E+T+TASIG AS+ + + K E+AM+ A+ +G + + + + Sbjct: 764 GMHELTLTASIGIASFPDNGADFDTLFKAVEIAMHRAQLKGRDTYQFYSDDMYEQVLAHD 823 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + + L A+ +L LVY P + L +I G+EAL++W HP+ G +S +F+ +AEE Sbjct: 824 RLIKALRQAIVLDQLQLVYQPQVDLQTGQICGVEALLRWQHPELGAVSPGQFIPLAEESG 883 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I ++L R +DI W D P + IN + DN L ++A ++++ P Sbjct: 884 LIIGIGEWVLRRACQDIRRWLDHGIKVP-HVAINASPLQFRDNNLVLQVKAALTESQIDP 942 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 + I + +ES +M + R+ +L L+ +GI L+LDDFGT S LSYL PFD VK + Sbjct: 943 ALIYIEVTESALMDDVPRNEAMLKALKDLGIKLSLDDFGTGYSSLSYLKRFPFDQVKIDQ 1002 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + ++ +++ I+ MA + +IA+ + E + + CD IQ P Sbjct: 1003 SFVRDIATSQSDSLLVKVIVSMAHGLGMKVIAEGVETEAQCEIMRTSICDEIQGYFFCKP 1062 Query: 944 LGFNSILKLLKE 955 + +I +L E Sbjct: 1063 ISAQAIEELFSE 1074 Score = 82.7 bits (203), Expect = 3e-13, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 7/140 (5%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 ++ + +R L + D++W D+ +P + + G S + Sbjct: 382 RIVRQRRAETALHESEQRHRLLADNASDVIWTMDLKGRFTYVSPSVEKLRGFTSAEVMQQ 441 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRG-----RLQYEFRVRAADNQFHWMIIRIRPMS 503 + + L + + E D W I M Sbjct: 442 --TLAQTLCPSSIPVATEALGKSMASMAAGLPFIGFRGELEQPCKDGSTVWTEISTNGMR 499 Query: 504 NSNGDILRYIGIANDITEQK 523 N GD + +G++ +ITE+K Sbjct: 500 NEQGDFVGIVGVSRNITERK 519 Score = 68.4 bits (166), Expect = 6e-09, Method: Composition-based stats. Identities = 49/429 (11%), Positives = 133/429 (31%), Gaps = 43/429 (10%) Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL--- 381 ++ R VL+ + ++IW +A +I+Q ++ G + +V Sbjct: 13 LAGTSLIRAAGRLVLVYAVFAGLWIWLSDELLAWLVSDPAEIVQASIFKGWLFVVATSLL 72 Query: 382 -------IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 + + + + + + S D ++ D+ + + Sbjct: 73 LYGLLRRLLRQSLVASMREQEAQAENHRSQQLLTALIDSSTDAIFAKDLAGRYLLFNHET 132 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 ++G G + R + R YE + D + + Sbjct: 133 TRVMGTTPERALGHDDT--ALFPPEQAELIRANDQRVLALNRTT-SYEETLETVDGERVF 189 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN--LTGIP------NRQS 546 + + P+ +SNG ++ GI+ DIT++K+ + A + LT +P + Sbjct: 190 LATKG-PLRDSNGQVIGLFGISRDITDRKRDETRLTLEARRAEALLT-LPGAAEIMTESA 247 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F+ + + + + + D + I + + +L + Sbjct: 248 FMQHGQEL---AEQLTGSQIAFIHLVHDDQETI------ELVNWSRSTLAQYCTSAFDRH 298 Query: 607 DIL--ARLSGN----RFGIILISENN---SLKIADFAIAMRKSIAMPINLLEREITVTAS 657 + AR+ + R +++ + + + + + I +P+ + + + A Sbjct: 299 YPVSQARIWADALRLRTSVVINDYASVMGKHGLPEGHAQLDRLINVPV-IDGGLVRMMAG 357 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717 +G ++ + A+ A++ + D+ ++ Sbjct: 358 VGNKPEPYTEADVETVRLIAD-AVWRIVRQRRAETALHESEQRHRLLADNASDVIWTMDL 416 Query: 718 SELYLVYHP 726 + P Sbjct: 417 KGRFTYVSP 425 >gi|257487365|ref|ZP_05641406.1| sensory box protein/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009036|gb|EGH89092.1| sensory box protein/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 705 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 145/585 (24%), Positives = 264/585 (45%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L +N + D + + E ++R Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + +++D +K IN+ G +GD+VL+ ++RR+ E L D L R+ G Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ + +R ++ +P L + I +TASIG A + S E++ Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+A AM AK G + + R+ ++ L AV+ +VY P + L D Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + GLEAL++W P IS + F+ + E L +I + ++++ + I W+ Sbjct: 476 NRVCGLEALLRWPRPGQAGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + L+ Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699 >gi|117926252|ref|YP_866869.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117610008|gb|ABK45463.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 1134 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 135/629 (21%), Positives = 273/629 (43%), Gaps = 35/629 (5%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA------- 410 T + Q L L + + V + +Q + + L Sbjct: 511 FTGICHDLRHQHWLQSALKMANDHLESQVAERTEDLTQANQALQQEVAEHQLTQAKLFLV 570 Query: 411 ---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRT 466 + + D + P + G + G H D + Sbjct: 571 NQVFEKARQAIVITDHNNKILDVNPAYEALTGFQKQQVVGHDPAVGKSGRH--DPAFYAR 628 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + S + + E R +D + + I + + G +L Y+ + D+TEQK + Sbjct: 629 MWRSLLSEN--HWEGEVWDRRSDGSIYPKYLSIDRVLDRQGSVLNYVAMFQDLTEQKATE 686 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 E + + D LTG+PNR F +RL ++ + +++I++D++K+IND G Sbjct: 687 EELERLSHYDPLTGLPNRALFRNRLEHEFLVARRHNR-SVALVLINLDRFKQINDSFGFT 745 Query: 587 VGDDVLVSLTRRIGELLKFPDILAR--------------LSGNRFGIILISENNSLKIAD 632 VGD +L + +R+ +L++ D++AR L G+ F IIL + A Sbjct: 746 VGDRLLAMVAKRLEQLVRKTDLIARQENRQERDSDTLSRLGGDEFSIILAELRAAEDAAI 805 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + P ++ +E+ + S+G + + + + + M++ AE A+ AK G N Sbjct: 806 VARRTVALLEEPYDIEGQEVFLGGSLGVSIYPENAESLNGMIQCAERALVKAKEGGRNTF 865 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + R ++V ++ +L AV L Y P + + EI G+EAL++W Sbjct: 866 RFYSEEMNRHSAEQVRLETELRRAVMQERFQLHYQPKLEIATGEIEGVEALVRWPRRDGR 925 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 S F+ +AEE +I + ++L++ D+++ Q P+ + +N+++K +L Sbjct: 926 MFSPDAFIPLAEETGLIVPLGRWILKQACADVVAINAQRVR-PLRVAVNLSAKQFQQEDL 984 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + + +T ++L +ES++MG+ + + + L+ +G++L++DDFGT S L Sbjct: 985 EQMVLEALEETGLETQLLELELTESMMMGDVDEAINTMSILKGLGLTLSIDDFGTGYSSL 1044 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL P D +K + S + + AI+ ++ + +++ ++A+ I ++ + L Sbjct: 1045 SYLKRFPVDALKIDQSFVRDLERDSEDAAIVHAVCNLGESLGMKVVAEGIETQLQMDFLR 1104 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ CD Q +A P+ + L + Sbjct: 1105 QLNCDTGQGYFIARPMPLAQLQDFLAQHQ 1133 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 82/287 (28%), Gaps = 15/287 (5%) Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 L M++Y A + + + + + + L + + + Sbjct: 287 LVHMAWYTVGQAGRGADVGVIYRLPRQAVLGAFDALVQRSLWINLALVMVALLGSALFAG 346 Query: 356 MAITKRLDNDIIQPALVGGLVL---------IVILIGFTVIQHVLATGYFSQGIFSDGER 406 + G L V IG T ++ A +Q + + +R Sbjct: 347 SVTRPLRHLAQVISGYGRGEHLPLQYTERSDEVGQIGETFLEMRQAIEARTQALEEEEQR 406 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFR 465 + + D + D + G S G + L + + D F Sbjct: 407 LNSLFESAVDGILIIDAKGIIQRYNAGACKLFGYTSKEALGKNVSLLMQDVVGQEHDLFI 466 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 T G R E R D + + + + G+ + GI +D+ Q Sbjct: 467 TRFLQEGGTRVVGNSREVEARHKDGSALPVQLSVSHFKYA-GE-DYFTGICHDLRHQHWL 524 Query: 526 LEGILCNAFQDNL-TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + L A D+L + + R L + L + L + + Sbjct: 525 -QSALKMAN-DHLESQVAERTEDLTQANQALQQEVAEHQLTQAKLFL 569 >gi|268680809|ref|YP_003305240.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] gi|268618840|gb|ACZ13205.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946] Length = 1196 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 149/608 (24%), Positives = 267/608 (43%), Gaps = 12/608 (1%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413 + ++ +D + A + V + Q + + E + Sbjct: 594 MAHSLKGYMDTVMTLNASLEKKVQERTSELLLLNQTIQEQLDIKKEQEEKLEIFAKIFSN 653 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFV 472 + + + ++ + + + A + G IR Y H + ++ I D+ Sbjct: 654 TIEGIAITNLEGIVLQINDAFSAMTHYAPHEVLGQDIRLLRSYKHPD--SLYKEIWDTVF 711 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 Q E + D + ++ I P+ N G I + I +DI+ K + E + Sbjct: 712 SNTA--WQGELWNKRKDGTLYPALLIIHPILNREGHISYIVFIQHDISVLKHNEEKLHQQ 769 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A+ D LT + NR DRL + + + L +V+ +D+DK+K IND LG +GD +L Sbjct: 770 AYYDPLTKLANRTLAYDRLQHAITNAKSRRRL-VSVLFLDLDKFKNINDTLGHDIGDLLL 828 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + + +RI L D + RL G+ F +IL + A + +++ P L R I Sbjct: 829 IEVAKRIQALCSQSDTVCRLGGDEFLVILEDITHYETAISVAKGIIAALSQPFYLEGRTI 888 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKED 710 + + SIG + + T +LKNA++AMY +K G E F S F + V ++E Sbjct: 889 STSTSIGITYYPNDGDTMKTLLKNADIAMYRSKTNGRGSYEIFTTALSDFIKESVKLEER 948 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L AVE E ++ Y PI L +EI+GLEAL++W++ F+ + EE MI Sbjct: 949 LKKAVEKHEFFMHYQPIYDLQKKEIIGLEALMRWNYKGVTYFP-DTFLSVMEETKMIAEA 1007 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 + + + I + +F+ INI+ E + + + + L Sbjct: 1008 SSNLFISVFHFIKKLNEALGRE-LFVSINISPVQFSVAPFQESLIHALEASTLRAQLVCL 1066 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ES+ + N E L L+ G + LDDFG+ S L YL +P + +K + + Sbjct: 1067 EVTESLFLENIEEVSQKLAALKTYGFCIALDDFGSGYSSLQYLKVLPLNKLKLDRIFVQD 1126 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 ++ IAI +S++ + KN +I + + E K L ++GC YIQ ++ P+ + Sbjct: 1127 LPDSQSDIAITQSVLALGKNFNVNVIVEGVETEEQCKFLEQIGCRYIQGYLISKPMPEEN 1186 Query: 949 ILKLLKER 956 +L+ L+E+ Sbjct: 1187 VLEFLREK 1194 >gi|148258560|ref|YP_001243145.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146410733|gb|ABQ39239.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 736 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 137/569 (24%), Positives = 249/569 (43%), Gaps = 20/569 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDW-DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + E L G+ + + A G + + L Sbjct: 179 ELKQREESFRLLFDGNPVPMIVCARSDGRVLGVNEAAAQHYGYSRAAFEQLNIRNLQ--- 235 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + + ++ AD + I R + + + + Sbjct: 236 ----AYESEPPWAAEHSGEEQAARTWKHVRADGALIDLAIYSRHLV--HNEQPAVLLALM 289 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+K++ + A D LTG+P+R ++ L + + V+V+ +D +K Sbjct: 290 DITERKRAEARLAFLAQHDALTGLPSRNLLRQKIEDKLGQMRR-GSEKMAVLVLGLDNFK 348 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG A GD +L + +R+ +L+ D++ARL+ + F I+ A + Sbjct: 349 SINDTLGHAAGDRLLRGVGKRLRSILRQEDVVARLNSDEFAIVHGGLARPEDAAQLCRRL 408 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696 ++IA P + +T+ A++G A + + ++LKNA++A+ AK F Sbjct: 409 LQAIADPYLIDGSSVTIGATVGIAMAPNDGDDAEKLLKNADMALSRAKTETRGSFSYFET 468 Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + R I+ +L A++ L Y P+I L I G EAL++W HP+ G I S Sbjct: 469 GMDARAQSRRKIEIELRDAIQRDVLQPYYQPLIDLSTGRITGFEALVRWPHPERGMIPPS 528 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AE+ +I A+ ML R D +W D+ + + +N++ + + Sbjct: 529 EFIPVAEDTGLISALGRVMLRRACNDAANWPDE-----VRVAVNMSPLQFRVGNVLSLVM 583 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ ++ PSR++L +E++V+ + L LR +G+ +++DDFGT S LSYL Sbjct: 584 DVLKQSGLPPSRLELEITETLVLEKSGQVLATLHALRALGVRISMDDFGTGYSSLSYLRS 643 Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + R AI+RSI+ + K + TI A+ + E +++ L GC Sbjct: 644 FPFDKIKVDQSFIRDLAANREAQAIVRSIVSLGKGLGVTITAEGVETEAELRCLRAEGCH 703 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKN 962 Q + P I+ LL+ + + Sbjct: 704 EGQGYLFSRPRPNAEIVGLLEAQSAADRR 732 >gi|326402744|ref|YP_004282825.1| putative signaling protein [Acidiphilium multivorum AIU301] gi|325049605|dbj|BAJ79943.1| putative signaling protein [Acidiphilium multivorum AIU301] Length = 1095 Score = 499 bits (1285), Expect = e-138, Method: Composition-based stats. Identities = 134/600 (22%), Positives = 263/600 (43%), Gaps = 27/600 (4%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR- 427 + + L FT Q R + +G +++ + D Sbjct: 496 LLVELTANMTKALQAFTTRQERDDALMAH---SMSERRIDRLLAATGVVLYALALHGDEA 552 Query: 428 --VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 V + +I +LG G++ G + W ++H D + L G+ + +R+ Sbjct: 553 VLVDMSENIVDMLGYVPGNIRG-LDWWRNHVHPEDLP--QAALGVPRTVESGQFVHRYRI 609 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R + + W+ ++ G+ + +G+ DITE++++ E I A D LT +PNR+ Sbjct: 610 RHQNGGYRWIHDEKTLQRDAAGNPVGIVGVWIDITERREAEEQIYRLAHIDPLTELPNRR 669 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 +RL +L + ++ ++ ID+D++K IND+LG + GD L +R+ + ++ Sbjct: 670 LLNERLREVLIEARRT-GVQGALLFIDLDRFKTINDMLGHSAGDSALRQAAQRLRQAVRA 728 Query: 606 PDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSI-AMPINLLEREITVTASIG 659 D +AR+ G+ F +++ + + A A M ++ A PI++ ERE + ASIG Sbjct: 729 ADTIARVGGDEFVVLIADAGSTVADAADHAATIARKMIDALTARPISIGEREYHLGASIG 788 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717 F + T +++ A+ AMY AK G V FR S S I++++ A++ Sbjct: 789 FTMFPKPDDTIDTLIREADTAMYQAK-AGEADVVMFRQSMHLSIVARHAIEDEIRSALKA 847 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 + + L + VG E L++ SEF+ IAE +I + ++L Sbjct: 848 GRFEIWLQDQVEL-GGKPVGAEVLLRLRDRDGRIAVPSEFIGIAESSGLIVPLGRWLLRE 906 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 + R + P + +N++ + D + A + + R+ L +E+++ Sbjct: 907 ACALLA--RAHRDRPDWRLSVNVSPRQFRDPAFVTDVIAALDISGVPADRLTLEITENLL 964 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI- 896 + + ++G L G+ ++DDFGT S L YL +P +K + + + Sbjct: 965 IRDTFEIARIMGILADRGVRFSVDDFGTGYSSLHYLRQLPIHEIKIDRGFIGQVPDDASS 1024 Query: 897 -AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 AI+ +I+ MA+ ++ ++A+ + + L GC +Q A P+ + L+ Sbjct: 1025 VAIVEAILAMARRLDLDVVAEGVETPEHVAFLKARGCPRMQGYFFACPISVSE---WLER 1081 >gi|87122548|ref|ZP_01078427.1| sensory box protein [Marinomonas sp. MED121] gi|86162190|gb|EAQ63476.1| sensory box protein [Marinomonas sp. MED121] Length = 1052 Score = 499 bits (1285), Expect = e-138, Method: Composition-based stats. Identities = 139/567 (24%), Positives = 265/567 (46%), Gaps = 12/567 (2%) Query: 393 TGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 SQ E + LA S + + +T P + ++ G + + G Sbjct: 470 ARDISQSYKQQEENRLLATFFKQSSEGMVIVSKRGRILTVNPALVSMTGFSPEQLIGS-- 527 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 ++ + +R++ + + + E+ + +Q W+ + + NG I Sbjct: 528 SFRKVLSNASYQAYRSMSVDLKNVGKWQGEMEYITLSQQSQPGWV--IATSVLDENGQIS 585 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ +DI++ K+S + A D LTG+PNR +L+ ++ + D + V Sbjct: 586 HFVASFSDISKLKRSQHKLQHLAHHDALTGLPNRTFLTQKLSGMISNARKQDK-QLAVAF 644 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D++K IND LG GD +L + +R+ LK +++AR+ G+ F +IL + + Sbjct: 645 LDLDRFKNINDTLGHLFGDKLLRVIAQRMYNQLKENEVVARIGGDEFILILDPSDGLEAL 704 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + A+ + I + + +EI ASIG + + +S + ++A+ A+Y AK G Sbjct: 705 SARLEALNQKIQEMVYIDGKEIMTCASIGVSLYPEDGTSSELLFQHADTALYSAKEAGRA 764 Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + S +R+ I+ L A+E E+ LVY PI ++ V +EAL++W+ PK Sbjct: 765 MHKLYASSLSIQAKERLDIESHLAKALEYKEMSLVYQPIYDFKQQKFVKVEALLRWNTPK 824 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + +F+ IAEE I I ++LE R + W+ + I +N++ + Sbjct: 825 LGQVPPDKFIPIAEETGGILTIGNWVLETACRTMAQWQQASCQIQ-RIAVNVSRIQIARQ 883 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + E ++ ++ T P I++ +ES +M + L +L++ G+S+++DDFGT S Sbjct: 884 NIFETVKEILILTQCKPQWIEIEVTESAIMNLSKEGLKQLTQLKEFGVSISIDDFGTGQS 943 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LS L +P T+K + S + E + I R I+ M+K + +A+ + + Sbjct: 944 SLSSLKTLPVSTLKIDKSFVQDMPENENDVEIARLILQMSKVLNVRSVAEGVETTEQAQV 1003 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953 L MGCD Q + PL ++ + Sbjct: 1004 LKSMGCDLCQGYLFSKPLSEEALASFI 1030 Score = 39.2 bits (90), Expect = 3.5, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 15/153 (9%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + + + + D + + + + + L+ + G Sbjct: 346 QIRRRTRAESALLREKALLAGIINTIPDHIVYKNTKFQYQVSNSAFESFVNLSKSKLIGN 405 Query: 449 IRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 L H D V + EF + + + I P Sbjct: 406 ADKDLFQNKIISLFHPMD--------SKVVQTGKEVRCTEF-IDLDQGESAILDIIKTPF 456 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 ++ G + I IA DI++ K E A Sbjct: 457 YDNKGVLTGIISIARDISQSYKQQEENRLLATF 489 >gi|329902010|ref|ZP_08273002.1| hypothetical protein IMCC9480_3764 [Oxalobacteraceae bacterium IMCC9480] gi|327548900|gb|EGF33524.1| hypothetical protein IMCC9480_3764 [Oxalobacteraceae bacterium IMCC9480] Length = 556 Score = 499 bits (1285), Expect = e-138, Method: Composition-based stats. Identities = 132/555 (23%), Positives = 252/555 (45%), Gaps = 26/555 (4%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIAT-------ILGLASGSMHGPIRNWLPYIHINDRDN 463 + +GD V+ D + + ILG + + + Sbjct: 1 MEAAGDAVFCLDDRGRILYVSQRALEFVGTGVSILGWFLSELAPLSDRLIISL------- 53 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 I + R G++ R+ W +++ G + + DI+ Q+ Sbjct: 54 --AITQALESGRSGKINT--RINTRK-SSMWFELQLTNYVTPEGTTALLV-VGRDISVQQ 107 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + E + A D LTG+PNR DRL + + +V+ +D+D++KK+ND L Sbjct: 108 DTEERLRHMATHDALTGLPNRSLLSDRLQMAIAQAKRTGRG-FSVLALDLDRFKKVNDAL 166 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L R+ E L+ D LAR+ G+ F +L + +I A M ++ + Sbjct: 167 GHLVGDTLLRVAGERLRETLRNVDTLARVGGDEFVAVLPGAVSEAEIQTVARRMIANMQV 226 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701 P + + V ASIG A++ ++L +A+ AM HAK G + + + Sbjct: 227 PFEIQGHTLYVGASIGAATYPDHGDDDVKLLSHADTAMCHAKETGKARCVVYNPQKFNQQ 286 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 V ++ + AV N E +L Y PI+ + +++G EAL++W P+ G + S+F+ +A Sbjct: 287 EYDVSMEAAMFDAVRNGEFFLHYQPIVDAVTCQVLGFEALMRWMRPELGPVPPSQFIPMA 346 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E +I + + L I +++ A P+++ +N++ + +++ M +S + Sbjct: 347 ESNGLINLLGAWALRSACMQIKRFQEVAGR-PLYVSVNVSPRQFRNDQFLGVMDNALSMS 405 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + S + L +E ++M +PE + +L ++ G+ + +DDFGT S L+YL P T+ Sbjct: 406 GLAGSELLLEITEGILMSDPEHAEAMLNQISSRGVKIAIDDFGTGYSSLAYLKRFPISTL 465 Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + E K AI ++ +A ++ + +A+ + ++ L R GC IQ Sbjct: 466 KIDRAFVQDLPESVKDAAICNVVLSLASHLNLSTVAEGVENAAQLEFLARQGCTLIQGYF 525 Query: 940 VASPLGFNSILKLLK 954 P+ + + LL+ Sbjct: 526 TGRPMLPEAAITLLQ 540 >gi|167589119|ref|ZP_02381507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia ubonensis Bu] Length = 749 Score = 499 bits (1285), Expect = e-138, Method: Composition-based stats. Identities = 146/644 (22%), Positives = 272/644 (42%), Gaps = 30/644 (4%) Query: 327 IYHGMKGYERAVLLIPAWILIF---IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 ++ K + + L W + F + A+ R L I +G Sbjct: 116 LWDAYKAFALPLGLRACWSVPFQDEAGAVLGAFAVYHRAPRRPTDEE-TALLRDISSSVG 174 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL----- 438 V Q +A + + E L V + + + P +L Sbjct: 175 LAVHQDRIA-----RQLARSEEHHRLVVNSLNEGILVVSRDGTVTASNPSAQRMLRVQGS 229 Query: 439 --GLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 G S+ R I +D + R + +L + R+ AD W+ Sbjct: 230 IVGRRLWSLVTSATREDGTPIPPDDWPSRRA-----LATGAPQLGFTIRLGLADGDMIWV 284 Query: 496 IIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 P+ + + ND+ +++ + + A +D LTG+ NR+ DR+ + Sbjct: 285 SGNAVPIVKPGDAQAGSVLLSFNDVGPVREAQQKLRYLATRDALTGLYNRRWLADRMRDL 344 Query: 555 L-DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 + R ++ ID+D +KK+ND G GD +L S+ R+ + L R+ Sbjct: 345 FGAHDGAAEAARIAILFIDLDGFKKVNDTSGHDAGDALLRSVASRLAGCVGERHALTRVG 404 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F I++ + +A A + +IA P ++ E + SIG + ++ + Sbjct: 405 GDEFVILVDDYDAPDDLAALARQVIDAIARPFDVANNEYYLGVSIGISLAPRDGDDAATL 464 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731 ++NA+ AMY AK RG N F + + I++ L A+ ++ L L Y P++ Sbjct: 465 MRNADSAMYDAKQRGRNTFTFFTAQLNQRLQRRFAIEQSLRRALASNALRLAYQPVVDGR 524 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 VG EAL++W + G +S +EF+ +AE+ +I AI ++LE R WR Sbjct: 525 SGRTVGAEALLRWTSAELGPLSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIA 583 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 P + + +N++ + D L E + +++ PS ++L +E ++M + + +L L Sbjct: 584 PDLMMAVNLSPRQFHD-GLVESVDRCLAQAGLDPSALELEITEGLLMYDTDTVLPMLRAL 642 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 + + +++DDFGT S LSYL P +K + S ++G +AI ++++ MA ++ Sbjct: 643 ADMNVRISVDDFGTGYSSLSYLKRFPLHNLKVDRSFVSGVPEHRDAVAITQAVVAMAHSL 702 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + A+ + E L ++GCD Q + PL + L Sbjct: 703 GMKVTAEGVETEAQSSFLRQIGCDKQQGYLFSRPLEPAEYARRL 746 >gi|126668290|ref|ZP_01739249.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Marinobacter sp. ELB17] gi|126627207|gb|EAZ97845.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Marinobacter sp. ELB17] Length = 803 Score = 499 bits (1285), Expect = e-138, Method: Composition-based stats. Identities = 144/577 (24%), Positives = 273/577 (47%), Gaps = 9/577 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + + + ++ S A+ S V D + + G ++ S+ Sbjct: 227 MRERLNQDIARQEQDALEIQKFSQAIEQSPSSVIICDRQWHIEFVNQKFSQLTGHSALSI 286 Query: 446 HGPIRNWLPYIHINDRDNFRTILD--SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G L + ++R+ + R G Q E + + W + + P+ Sbjct: 287 IGKHPGSLGSDNSDNRE-AEKLWKSIRLQVQRVGVWQGEVTSARRNGERFWEQLIVTPIK 345 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ D ++ + DI+ +K+ +L A D LTG+PNR LDRL L + ++ Sbjct: 346 DAKADTTGFLILGEDISIRKRYERQLLRQANYDILTGLPNRMLALDRLKLALAQARR-ES 404 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 VM +D+D +K +ND LG GD +L+ RRI L+ +ARL G+ F +IL Sbjct: 405 TEVGVMFLDLDNFKHVNDTLGHDAGDTLLIEAARRISSCLRGSSTVARLGGDEFLVILPG 464 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + A + K+ +MP L E+ VT SIG A++ + S E++++A+ AMY Sbjct: 465 LQSAEVSSQVAERILKTFSMPYQLNSHEVYVTTSIGIAAFPADSDNSGELMQHADAAMYQ 524 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G + F +R+ ++ L A++ E L Y PI+ + ++ EAL Sbjct: 525 AKRKGKSDYVHFSPEMSEISHERLQLESRLRRALQQEEFELFYQPIVSTSNGNLLAAEAL 584 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W++P+ G + F+ +AEE +I AI +++++ ++ ++W++Q I I +N++ Sbjct: 585 LRWNNPEIGQVMPDRFIPLAEETGLITAIGEWVIQQACQNAVTWKNQLGR-DIGISVNVS 643 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + +S + + ++L +E +++ N + +L L + G+ L++D Sbjct: 644 PRQFRAAGFVTSVMDALSTSGLAAEFLELEITERLILDNSIETAQILQELDEHGVRLSVD 703 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL PFDT+K + S + ++ +II MA ++ +IA+ + Sbjct: 704 DFGTGYSALSYLKSFPFDTLKIDKSFVQDILKDPDDAVLVSAIINMAHSMGLRLIAEGVE 763 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E ++ L + GCD Q + PL + L Sbjct: 764 EEEQVQFLQKAGCDCAQGYFYSRPLPAIEFSQWLDSY 800 >gi|307634790|gb|ADI83877.2| response receiver-modulated diguanylate cyclase/phosphodiesterase [Geobacter sulfurreducens KN400] Length = 799 Score = 499 bits (1285), Expect = e-138, Method: Composition-based stats. Identities = 140/626 (22%), Positives = 267/626 (42%), Gaps = 38/626 (6%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIV-----ILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + M D+D ++ A G V + + +++ + Q + + Sbjct: 174 VVMMTALG--DSDAVREAFDAGATFFVPKPINLSTLPEHLTYLVRSSRVLQELHESEAQN 231 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR--NWLPYIHINDRDNFR 465 + D++ + G A + G +R + F Sbjct: 232 RALLNAIPDMMLHVCREGTILDF--RAGN--GCAYAAFGGNLRGRTIADLLPPGAATQFM 287 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + + E+ + R ++N G +L I D+TE+++S Sbjct: 288 AQVGHALAT-GTMMVCEYELEGPGG---LNTHEARIVANGTGTVL---AIVRDVTERRQS 340 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I A D+LTG+PNR F + L +L + D + ++ +D+D +K IND LG Sbjct: 341 EEMIRYLAHHDSLTGLPNRIFFGEMLELVLSRARRDGK-QVAILFVDLDDFKLINDTLGH 399 Query: 586 AVGDDVLVSLTRRIGELLKFPDILA------------RLSGNRFGIILISENNSLKIADF 633 A GD +L +R+ ++ D +A R G+ F + L + ++ + Sbjct: 400 AAGDHLLREAAQRLKGCVRSSDYVASGAESGLCGNIARFGGDEFILSLGNLDSVDDVVAV 459 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + + + EI V+ SIG + + + +++NA++AM+ AK GG Sbjct: 460 TQRIISEFSREFRIDGHEIFVSVSIGISMYPDDAEDTGSLVRNADMAMFAAKEEGGPSFR 519 Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + R+ I+ L A+E E+++ Y P + L EI G EAL +W HP+ G Sbjct: 520 FFTRGMDEAAQQRLSIELSLRKALERGEIFVHYQPKVDLSCGEITGFEALARWHHPELGL 579 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I F+ +AE+ +I I ++L +W D+ + + IN++S L Sbjct: 580 IPPDTFIPLAEKNGLIVRIGEWVLRAACAQARTWIDE-GFSDLCMAINLSSHQFTSGNLT 638 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ ++ +T PS ++ +E ++M E++ +L LR +G+ +++DDFGT S L Sbjct: 639 SMVKEVLDETELPPSCLEFEITEGILMERTEKTMRILSELRDMGVRISIDDFGTGYSSLG 698 Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P +TVK + S + + AI+++II +A+N+ ++A+ + + L Sbjct: 699 YLKRFPVNTVKIDRSFVREIDSPHEDAAIIKAIIAVARNLNLQVVAEGVESHRQTEFLLA 758 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 GC+ Q P+ + +L+ Sbjct: 759 HGCNEAQGFLFGKPVHPDEASLMLRA 784 >gi|205374991|ref|ZP_03227782.1| sensory box GGDEF domain-containing protein [Bacillus coahuilensis m4-4] Length = 741 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 143/562 (25%), Positives = 272/562 (48%), Gaps = 24/562 (4%) Query: 404 GERQSLAVLGSGDIVW---DWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHIN 459 ++ V S D + DW + + +LG + G P++ Sbjct: 189 EDQYRGLVEMSPDFIAVIRDW----TFIYLNESGSRLLGYEGVEDLIGK--RIRPFVAAE 242 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + L + +E +V AD + + + + + IG DI Sbjct: 243 YLGEIQEHLIELDKNKNDHQHFEIKVVKADGGKLDLEMSVMTIVYKGKEARMVIG--RDI 300 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE+KK+ E I A+ D LTG+PNR F + + L+ + + V+ +D+D++K I Sbjct: 301 TERKKADETIQYMAYYDALTGLPNRNMFKEHVDKRLN---ENPEEKLAVLFLDLDRFKVI 357 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G ++GD +L + RR+ +++K +++R G+ F ++L + ++ I A + K Sbjct: 358 NDTKGHSIGDRLLQLVARRLTDVVKESGVVSRQGGDEFLLLLEN-TSTEAIEHTANQLIK 416 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 S A P +++ + VT SIG + + ++K+A+ AMY AK +G N+ + F S Sbjct: 417 SFAKPFTIMDEDFFVTTSIGISVYPMDGEEQETLIKHADTAMYLAKDQGKNNFQFFNPSL 476 Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + + ++ ++ +L A++ EL + Y P + E+I +EAL++W HP++G +S EF Sbjct: 477 NKLTTRKMKLEAELRKAIKLDELSVYYQPQYDMQSEKITAVEALLRWHHPQFGMVSPGEF 536 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I I +++ER+ D W+ Q P + +N++ + L + ++ Sbjct: 537 IPLAEETGLIIPIGEWVIERVLMDQKKWKAQGISYP-RVAVNVSVRQLQERSFVRSVENK 595 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++ ++L +ES +M N E S +L L+++G+++++DDFG S LSYL ++P Sbjct: 596 FNQYQGDSCLLELEITES-IMQNVEESIRVLSELKELGVTISIDDFGKGYSSLSYLKHLP 654 Query: 878 FDTVKFNGSLMTGS----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 D +K + S + +I ++II M +N+ +IA+ I + L GC Sbjct: 655 IDKIKIDKSFVDDIGGLCDRNPSSIAKAIIDMGQNMGFLVIAEGIEKKEQRDFLLANGCL 714 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 Q + + + I K+ E Sbjct: 715 IGQGYFYSRAVPEDVIQKMWAE 736 Score = 98.5 bits (244), Expect = 5e-18, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 56/164 (34%), Gaps = 2/164 (1%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 +L+ + T++ ++ ++ + +R + +W D+ + + Sbjct: 34 LGFSIAHMLLNTIPVITLMILLIYVRKQTKELNQSHQRLNSIFDFLDVAIWSHDLRTNTL 93 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 TP I + G + + W +H D + + + +R+ Sbjct: 94 MITPGIEKLYGYSLNEFYDDHDLWRKVVHPLDVPVLEERGEKLKEQK--SVTSIYRIFHK 151 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 D W+ P + G+ + + + D+T+QK+ + Sbjct: 152 DGDLRWIQDSGIPSFDERGNFIDFTSVLFDVTDQKEGEDQYRGL 195 >gi|127513349|ref|YP_001094546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Shewanella loihica PV-4] gi|126638644|gb|ABO24287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella loihica PV-4] Length = 1437 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 134/562 (23%), Positives = 261/562 (46%), Gaps = 19/562 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V + + G + ++ Sbjct: 875 QAEEQLRLFERAIENISEGMFILDNKFKFVEVNEACCDLCEKSRNDFIG--ELFKFDLYP 932 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 ++ + + + G E D M + + + + G + Y+G+ +D Sbjct: 933 E---SYSEQIRHILQQQ-GSWSNEVESAKGDGSSFLMELTVDAIYDEQGVLSHYVGVFSD 988 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ +K+ E + D LT +PNR S + L ++ + T+MV+D+D +KK Sbjct: 989 ISRRKQQEEELRKLTNNDLLTSLPNRSSLMVTLGNLVKK-----DTHHTLMVLDLDNFKK 1043 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD++L+ + RRI + + + RL G+ F I++ + + A A + Sbjct: 1044 INDSLGHQVGDELLIKVARRIESTVPYHTSIYRLGGDEFAILVDNNPDIGSSAVIANHVV 1103 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + + P L + + V SIG + +L+ A++AMYHAK GGN + + S Sbjct: 1104 DAFSSPFELTKDRVVVGVSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1163 Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ + + + + + Y P I L ++ G+EAL++ +HP+ G I + Sbjct: 1164 LNRNAIRQLEVENLIREGLRDDLFEVYYQPKIDLRTSKMAGMEALVRLNHPEHGLIPPGD 1223 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L + +WR Q + +N++S+ +L + +++ Sbjct: 1224 FIPLAEENGLIVEIGEVVLRKACFAAQNWRRQNLFNG-RVAVNLSSQQFALPDLQQRIES 1282 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE++ ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1283 ILRLTQLPAANLELEITEGTVIKQPEKAIKVMMQLSKMGVSLALDDFGTGYSSLSYLKRF 1342 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P DT+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1343 PIDTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEEASQLSILKALKCEE 1402 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ + + S +LLK+ Sbjct: 1403 IQGFIYSKAVNETSFTELLKQE 1424 Score = 125 bits (314), Expect = 4e-26, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 3/181 (1%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 I ++I + A V L LI +LI +++ L + I ER L+ Sbjct: 703 GITQSLSIEITPPWWLSIQAKVVYL-LITLLITGVIVKAALRRREVQRQIAKSEERLKLS 761 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + GSGD +WDWDI ++ + + L IH D++ T L+ Sbjct: 762 LWGSGDEMWDWDIETGQIYRSNIWGS-LEFPRDGQRSGEEGEESNIHPMDQERVNTALNK 820 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGI 529 + +RV+ D+Q+ W++ R + + + LR G +I+ K++ E + Sbjct: 821 HFYGETDHFEAAYRVKGKDDQWIWILDRAKIVERDEEDKALRMTGTIKNISNFKQAEEQL 880 Query: 530 L 530 Sbjct: 881 R 881 >gi|124516000|gb|EAY57509.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum rubarum] Length = 702 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 120/438 (27%), Positives = 224/438 (51%), Gaps = 6/438 (1%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 K + E + A D LT +PNR DR+ + + + +V +D+D++K IND Sbjct: 253 LKAANEKLHYLALHDGLTRLPNRTLLEDRVDQAIRHA-RSGDGTFSVFFLDVDRFKPIND 311 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG + GD VL + R+ + D +AR+ G+ F I+ + + K+ + A +R + Sbjct: 312 SLGHSTGDKVLQQMASRLSATVGPEDTVARIGGDEFVIVFPEKKDPGKVHEIARRIRDCV 371 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 A + + + ++VT SIG + + T +L +A+ AMY+AK +G ++ + Sbjct: 372 AESMEVDGQSLSVTTSIGISLFPHDGTTFRTLLASADSAMYYAKSKGPGQIQFYSGEMND 431 Query: 702 SDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 S + I+ DL +E E L Y P + L E+ +EAL++W+HP+ G + F+ Sbjct: 432 SAALRIEMENDLRRGIEKEEFVLYYQPKVSLATGEVESVEALVRWNHPEKGILPPHYFIP 491 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 AEE +I + ++++R R+ + W P + + +N+++ ++ +L + + Sbjct: 492 RAEETGLIIPLGRWIMDRACREAVIWHQA-GFPRLRVAVNLSALQFINQDLVREILTALE 550 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 ++ SP ++L +ES++M +P+ + L +R+ G+ + +DDFGT S SYL P D Sbjct: 551 RSGLSPECLELEITESLLMQDPDAAMRTLSGIREKGVHVAIDDFGTGYSSFSYLKKFPLD 610 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S +T AI+R+II + N+ +IA+ + + ++ L M CD Q Sbjct: 611 RLKIDRSFITDICDNPNDAAIVRTIITLGHNLNLKVIAEGVESQAQLEMLKTMECDAYQG 670 Query: 938 SHVASPLGFNSILKLLKE 955 + + PL + + LKE Sbjct: 671 FYNSRPLPPGELAERLKE 688 >gi|323489110|ref|ZP_08094344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Planococcus donghaensis MPA1U2] gi|323397233|gb|EGA90045.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Planococcus donghaensis MPA1U2] Length = 658 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 150/663 (22%), Positives = 284/663 (42%), Gaps = 22/663 (3%) Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 + ++ + ++ F+ +K ++L + WI + + + Sbjct: 11 VLIVLSILIIFCSSFITLNVNTSRFEFVEKVRVKWILFSILAMELWIWSMQFIGITSLPV 70 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG--ERQSLAVLGSGD 416 + ++ ++ + T++ V + +D + + + D Sbjct: 71 DGSVIMTLLSDNNNYINYVVGLFFALTLLVSVFNLHRNKVKLLADEYSRQFDSLIETATD 130 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 + D ++ G + + I + + Sbjct: 131 GIVVTDHNGIITQWNHGAESLFGYHKDEVVDQN---VRMIFPD-------AFPTSDIQEF 180 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 E D + + GD + I DIT+Q+KS E I + D Sbjct: 181 AGQTRELIGYKKDGSQFPIELSTGYWETVRGD--YHSLIIRDITDQRKSEEKISNLVYLD 238 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +LTG+PNR+ + DRL + +D + D+ TV+ +D+D++K +ND G +GD +L+ ++ Sbjct: 239 SLTGLPNRRLYNDRLESTIDQA-LDNKTTHTVLYLDLDQFKLVNDTYGHQIGDQLLIEVS 297 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 +RI + D LARL G+ F ++L + +N K A + +A +L + E+ +T Sbjct: 298 QRIKSCISKADTLARLGGDEFILLLPN-SNYTKAEAVARNILNVLAHAFSLNDEEVFITP 356 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714 SIG + + + S ++KNA++AMY K G N+ + F I + Sbjct: 357 SIGASLFPADGTDSETLVKNADIAMYRVKEEGKNNFQFFTSEMNDLISRKSKIAMSIRKG 416 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 +E E + Y P I + E I+G+EAL++W+H K G IS +EF+ IAEE MI I F+ Sbjct: 417 LELGEFSVHYQPQIDIETENIIGVEALVRWNHAKLGPISPAEFIPIAEENGMILHIGEFV 476 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 L +W++ + P + +NI++K + E + + + +P ++L +E Sbjct: 477 LRTACLQTKAWQNA-GVEPFRVAVNISAKQFSQGNISEVITSALENAQLAPEFLELELTE 535 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894 S ++ + + L+ +GI L++DDFGT S LSYL P D++K + + Sbjct: 536 S-LIQGATSAIAKMQELKAMGIHLSIDDFGTGYSSLSYLKLFPIDSLKIDQYFTRNINKD 594 Query: 895 --RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 A++ +II MA+N+ +IA+ + + L C+ Q + PL I +L Sbjct: 595 AKDAALVDTIIQMARNLGLNVIAEGVETLDQLVYLKNKRCNQAQGYYFQKPLSPEKIEEL 654 Query: 953 LKE 955 + Sbjct: 655 YSK 657 >gi|183219731|ref|YP_001837727.1| hypothetical protein LEPBI_I0307 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909867|ref|YP_001961422.1| signal transduction protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774543|gb|ABZ92844.1| Signal transduction protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778153|gb|ABZ96451.1| Hypothetical protein LEPBI_I0307 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 694 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 149/597 (24%), Positives = 269/597 (45%), Gaps = 16/597 (2%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + L+ L I++GF + F + ++ + D Sbjct: 99 VWIIWLLIPLTDSKIILGFDRDVTIQKDISFEFLLQQ--QKYKSIFDNLPMGIAITDEKG 156 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNF--RTILDSFVGYRRGRLQY 481 V T T + G + N I N + ++ L + ++ Sbjct: 157 KIVETNKTARTYFDIQDGELLNRTLNIRKYTLIQPNGTKIYPRKSSLMRALRHKEVIRNL 216 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E + +N+ W I P+ N DIT+++ + E I AF D LT + Sbjct: 217 EIGMI-KENKITWFDILATPIPIEN---FGLAVAFLDITQRRHAEEKIAYMAFFDQLTNL 272 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR S +D+L I + + NL ++ ID+D +K IND G GD ++ + RI E Sbjct: 273 PNRNSLIDKLFPIFEEARRHGNL-VGILAIDLDNFKIINDSRGHDFGDKIIKLVAYRIRE 331 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 ++ D+++R G+ F ++L +N A + ++ ++ P + I V SIG A Sbjct: 332 SIRVYDLISRQGGDEFTVVLPDLSNERDAAVISESILDAMTHPFVIDGERIFVNISIGIA 391 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 + + S+ +LKNA+ A+ AK +G N F +R+ I+ + +A+ ++ Sbjct: 392 LYPTDGKDSNTLLKNADSALNLAKSQGKNCYVFFTEELQTVVAERLEIENRMRIAIIENQ 451 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L+Y P I L + VG+EALI+W HP+ G IS + F+ I+EE MI AI ++++ Sbjct: 452 FTLMYQPKIDLYTRKPVGVEALIRWRHPERGLISPNVFIPISEETGMILAIGEWVIKSAI 511 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + + W+D + I + +NI++K L + + P +++ +ES VM Sbjct: 512 KTMREWKDH-GVKDISMAVNISTKQFKHERLISTIAENLKLYKVDPHDLEVELTESSVME 570 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897 N + + + +RK+G + +DDFGT S L YL +P ++K + S ++ + Sbjct: 571 NADAAVRTMQEIRKLGAKIAIDDFGTGYSSLGYLKKLPISSLKIDRSFVSEITTDKDSKT 630 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 I+ ++ +A N+ +++A+ E ++ L G D IQ + A P+ L LK Sbjct: 631 IIHAVSNLAHNLGLSVVAEGAETEEQVRLLAESGVDQIQGFYFAKPMTSEDCLHFLK 687 Score = 46.1 bits (108), Expect = 0.031, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 14/126 (11%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V DW + V+ T A L + G + L + +D++N + + Sbjct: 29 VLDW--EGNFVSVTDRFARFLEFEPKEIVGK--SILNFTQEDDKENTQNTFEGLGENPN- 83 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-----SLEGILCN 532 + +E R+ + W+I + P+++S +G D+T QK L+ Sbjct: 84 IVNFENRLVTKSKEEVWIIWLLIPLTDSK----IILGFDRDVTIQKDISFEFLLQQQKYK 139 Query: 533 AFQDNL 538 + DNL Sbjct: 140 SIFDNL 145 >gi|313682618|ref|YP_004060356.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313155478|gb|ADR34156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 778 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 145/588 (24%), Positives = 263/588 (44%), Gaps = 21/588 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F + + + + + + + D + + R + + G+ S Sbjct: 200 FGISRDITEETVSQIRLEKQNALLTSLINSTPDAIVIKGLDRRYIVFNEGASKFSGIKSS 259 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + I +D + + +++E + + + + + + Sbjct: 260 DAVGKTADE---IFPPKTAGIINAIDDDLLKNQSFIEHEETLIMPNGKMYIYWVTKGLLK 316 Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556 NGDI GI DIT +K + A D+LTG+PNR S ++ L Sbjct: 317 TENGDIFGIFGIYRDITNEKHHEQIMTNEKDRFDFMAHHDSLTGLPNRLSLMEYL----- 371 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 N + +D+D +K++ND G GD +L+ + + + + R G+ Sbjct: 372 KIKCSQNSPFAFLFLDLDGFKEVNDSYGHRFGDKLLIRIAEVLETITPSNSKIIRTGGDE 431 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +IL +I + ++ P N+ ++ +TAS+G A + S S ++ + Sbjct: 432 FVVILECNEEENRIDLMMQNLVLALRHPFNIDNVDVYITASVGIAMYPSDADNSEDLFQK 491 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY+AK G N + + I +L A+++ EL L Y P + EE Sbjct: 492 ADAAMYNAKKSGRNTYSFYESKFTETSIQRTTISTNLKKAIQSGELSLHYQPQVDQFTEE 551 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I+GLEAL +W P+ G +S F+ IAEE +I I F+L W D+A + Sbjct: 552 IIGLEALCRWFTPE-GAVSPGVFIPIAEESGLILEIGEFVLREGCLKTSKW-DKAGLLNG 609 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + INI+++ L + + + +++S+T P I+L +ES ++ +PE LL L+K Sbjct: 610 RVAINISARQLSHVDFIDTLDSIVSETQCDPKLIELEITESSILNDPEYVIALLHTLKKR 669 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETT 912 G +++DDFGT S LSYL +P D +K + S + T+ R I+++II +AK ++ Sbjct: 670 GFFISIDDFGTGYSSLSYLKNLPIDKLKIDQSFIRNITDNRKNQTIVKTIIALAKGLDIK 729 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++A+ + +++ L D IQ + P+ S+ L KE P+V Sbjct: 730 VLAEGVETSEELEFLRLNQIDSIQGYYFYKPMDSQSVESLFKENRPIV 777 Score = 68.8 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 55/188 (29%), Gaps = 7/188 (3%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 + L I+ + + + V S D Sbjct: 47 TYKGFFFIVVTSVLLYLLSYRILRERSLEYTRRLNEQKTAQIQLARQDALLRTIVNSSPD 106 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 ++ D+ + I+G++ + G + R + S + + Sbjct: 107 AIFVKDLEGKYLLFNNGAGEIVGMSPEKVIGNTDSL--IFSPETASKIRELDRSIISGAK 164 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-AFQ 535 E+ + ++ + + P+ N G I GI+ DITE+ S + A Sbjct: 165 TITNKEY-LTTSEGKEKSFWVTKGPLFNEEGKIFGLFGISRDITEETVSQIRLEKQNAL- 222 Query: 536 DNLTGIPN 543 LT + N Sbjct: 223 --LTSLIN 228 >gi|254759402|ref|ZP_05211427.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia 94] Length = 908 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 157/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D + + + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L I+ + T ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + + + + E +T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + A ++ T S + L Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +G+ +++DDFGT S L+YL P +T+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPINTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ +S Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFS 897 Query: 951 KLLKE 955 LLK+ Sbjct: 898 TLLKK 902 >gi|229197860|ref|ZP_04324576.1| Sensory box/GGDEF [Bacillus cereus m1293] gi|228585578|gb|EEK43680.1| Sensory box/GGDEF [Bacillus cereus m1293] Length = 911 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 154/712 (21%), Positives = 302/712 (42%), Gaps = 47/712 (6%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG------YERA 337 + I + ++ Y + ++ T+ + L Y I+ + G Sbjct: 201 RKIYIFIFVLISSATFNYIYFYLHNHLSTETITLLRLLYRIPILLIAIAGSISEDRNSNK 260 Query: 338 VLLI---------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 I I + + ++ + I+ + ++I +Q Sbjct: 261 NYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTASSILITGNCIAFIFVLIRHSIVRMQ 320 Query: 389 ---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 + S+ + ++ D ++ D+ Sbjct: 321 NNSLTKRLQVFNAQLEEKVRLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGVF 380 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + + +LG + + G I D+ + L+ LQ + Sbjct: 381 LNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQESASLQLSSQY-- 436 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D + + + I P+ +G I + DIT KK E I AF D +T I NR F Sbjct: 437 KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAFHDTVTKIGNRAFF 495 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +L I+ + T ++ ++ +D+D++K +ND LG + GD +L + +R L Sbjct: 496 HKKLKRIIKNAKTTES-EFALLYLDLDRFKAVNDTLGHSAGDYILEEVAKRFQSCLPSHT 554 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 L+R+ G+ F I++ + + + + K + + E +T++ SIG A + S Sbjct: 555 HLSRIGGDEFTILIENYTDEDSLFQLCNQLFKCMEKSFVIYEHTLTLSISIGIAIYPHSG 614 Query: 668 ITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725 I ++ +LKNA +AMY AK + ++ R+ +++DL A++N EL+L+Y Sbjct: 615 IDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQ 674 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + +I+G EALI+W+HP+ G IS EF+ IAEE I I + L++ + W Sbjct: 675 PQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRW 734 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + I +N+++K+ + + + A ++ T S + L +E + M + + Sbjct: 735 HTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLELTERIAMMDERETL 793 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSII 903 + L L+ +GI +++DDFGT S L+YL P DT+K + + + + + I+++II Sbjct: 794 IKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTII 853 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +A + ++IA+ + + + L + C IQ + + P+ +S LLK+ Sbjct: 854 TLANTLGMSVIAEGVETKEHVSFLQKNNCQLIQGYYYSKPIHADSFSTLLKK 905 >gi|300114022|ref|YP_003760597.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539959|gb|ADJ28276.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosococcus watsonii C-113] Length = 692 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 130/574 (22%), Positives = 252/574 (43%), Gaps = 22/574 (3%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS------GSMHG 447 + Q + ++ R S + + D+V D+ LG S+ Sbjct: 126 RWQRQAVENEHARLSSILEATPDLVAIMDLTGRIHYMNRAGCQWLGFTEKNHYMGASLLD 185 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +W + R G + E + + + N++ Sbjct: 186 HYPSWTAAL--------MQNTAIPTALRVGVWEGEAVMLNGKGAEIPISQVLLSHRNASH 237 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + I DI+E+K + + D LT +PNR DRLT +L + + L Sbjct: 238 QVEFLSTIVRDISERKHYEQELQYRVTHDTLTHLPNRVLLRDRLTQVLAHAKRNQRL-AA 296 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ +++D +K+IND LG GD L +L R + ++ D L R + F +IL + Sbjct: 297 VLFLNVDNFKQINDALGHLAGDKCLRALARHLASCIRASDTLGRYGSDEFLVILSDLYSP 356 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + +R + + P+ L ++ VT SIG + + + +LK + +AM++AK Sbjct: 357 SDVEAIIKKIRAATSHPLALNNSDVFVTLSIGVSLYPQAGDDEETLLKTSHIAMHNAKRH 416 Query: 688 GGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + + ++ DL A+E E L Y P + + +I +EALI+W Sbjct: 417 GPGQSRYYLPEMNSRGDELLALETDLRRALEREEFVLHYQPQLEVTTGQITAVEALIRWQ 476 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G + +F+ + E+ +I+ + ++LE + SW + PI I +N +++ Sbjct: 477 HPHRGLVPPRDFIPLLEQTGLIEEVGEWVLETACKQAKSWHSEGY--PIRIAVNCSARQF 534 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + ++ ++ K PS ++L +ESVVM + + + +L RL+++G++L +DDFGT Sbjct: 535 QQH-FLDSVRRILQKYALHPSYLELEVTESVVMQDMQSTTYILQRLKEMGVTLAIDDFGT 593 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P ++K + S + E+ AI +I+ + +++ ++A+ + Sbjct: 594 GYSSLAYLKRFPVHSLKIDHSFVRDITNNEEDAAIAETILLLGNSLKLEVVAEGVETGTQ 653 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++ C IQ + P+ N + L+ + Sbjct: 654 MRFFQDRHCHRIQGYWIGRPMPANDLFSLMAGKN 687 >gi|296447498|ref|ZP_06889421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylosinus trichosporium OB3b] gi|296254965|gb|EFH02069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylosinus trichosporium OB3b] Length = 825 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 129/561 (22%), Positives = 243/561 (43%), Gaps = 17/561 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + L + +W D + GL Sbjct: 267 ELKEREASFRLLFENNPMPMWVHDPQSLGVLAVNDAAVEHYGLPRERFLAS--TLFDLYA 324 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + + RR + R A + ++ R + + + + Sbjct: 325 EEEWPAL--AMSRDYPARRHAPDRVWSNRTAGGRVIKVLNYGRELVF-DNRPAVLLAVV- 380 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+TEQ+++ I A D LTG+ NR F RL+ L+ V+ +D+D +K Sbjct: 381 DVTEQREAAARIAHLAHHDPLTGLANRTLFRLRLSEGLERLDETSAPGIGVLYLDLDGFK 440 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND G VGD +LV++ R+ LL D++AR+ G+ F ++ + + A + Sbjct: 441 DVNDAYGHPVGDRLLVAVAERLRRLLPQGDLVARVGGDEFALVQCG-ADRDEAERLACVV 499 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++++ + ++ + AS+G + + + +LKNA++A+Y AK G F Sbjct: 500 VEALSRTYEIDGHQVNIGASVGVSVAPNDSDDADTLLKNADIALYRAKADGRGVHRFFEP 559 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + ++ DL A+ E + Y PII ++ EIV EAL++W HP G++ S Sbjct: 560 QMAATIHQRRTLEADLRQALRAGEFQIYYQPIIDIVTNEIVASEALLRWFHPMRGSVPPS 619 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AE+ +I I ++L R+ SW PI + IN++ L + + Sbjct: 620 DFIPLAEDTGLIVPIGEWVLREACREAASWP-----TPIGVSINLSPAQFRSRALTQAVV 674 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ + R++L +E+V++ + +L RLR +G+ ++LDDFGT S LSYL Sbjct: 675 SALASSGLVAHRLELEITETVLLAENHANLSVLHRLRGLGVRISLDDFGTGYSSLSYLRS 734 Query: 876 IPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + E AI+R++ + + + +A+ + + L + GC Sbjct: 735 FPFDKIKIDRSFVKELPENHECGAIVRAVAGLGQCLGVATVAEGVETLDQLARLRQEGCT 794 Query: 934 YIQDSHVASPLGFNSILKLLK 954 +Q + P + ++L Sbjct: 795 QMQGFLFSRPTPAAELRRMLA 815 >gi|229098215|ref|ZP_04229162.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] gi|228685113|gb|EEL39044.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] Length = 883 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 163/725 (22%), Positives = 316/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + + I ++ Sbjct: 168 PTVFNSKRKIYIFIFVLISSATFNYIYFYLYSHLANDTITLLRLLYRVPILLIAIAGSIS 227 Query: 304 PM---------VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 V + + L +I +K + LI + F++ + Sbjct: 228 DDYNSNKNYFTVHPKLGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLI- 286 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 +I + + + L + + S+ + ++ Sbjct: 287 RHSIVGMQNATLTKRLQAFNAQLEDKV-----TLRTSDLVHKSEALSEKQQKFESLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ T L+ Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSVLLGAPTNELLGETC--FSIILDEDKHKLLTALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + LQ + D +++ + I P+ NG I + DIT KK E I AF Sbjct: 400 KSASLQLSSQY--KDGFIYFLYVTIVPIM-INGQISGSYIMVKDITAHKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + T N ++ +D+D++K IND LG + GD +L Sbjct: 457 HDAVTKIGNRAYFHKKLRKVIKNAQT-INSEFALLYLDLDRFKAINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L ++R+ G+ F I++ + + + + +S+ P + E+++ V Sbjct: 516 VAQRFQSCLPSHTYVSRIGGDEFTILIENYTDHDSLFQLCNELFESMKKPFVIHEQKLNV 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I +S +LKNA +AMY AK + + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDASTLLKNANVAMYDAKEKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + ++ T S + L Sbjct: 696 WTLQQACEQMKRWH-VLGYSHLKIGVNLSAKEFEQEDFVKSISFTLATTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K M+ Sbjct: 755 TERIAMMDERETLIKLRTLKNLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFMTMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + E + I+++II +A +E ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 815 TCEDGMEIIKTIITLAHTLEMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYSNAFT 874 Query: 951 KLLKE 955 KLLK Sbjct: 875 KLLKN 879 >gi|95930087|ref|ZP_01312826.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95133781|gb|EAT15441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 946 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 152/585 (25%), Positives = 272/585 (46%), Gaps = 14/585 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATI 437 L+ F VL++ + E+ + S D V D+ + I Sbjct: 365 LVSFKGDTAVLSSVRDIRERLEKEEQLKQLMTVVENSNDGVLVTDVTGSIIAVNRAFCRI 424 Query: 438 LGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G + G R + IH D+ ++ + + Y G+ Q E R D + + + Sbjct: 425 SGYDEEDVLGKTPRMFQSGIH--DKSFYQAMWNELAQY--GQWQGEIWNRNKDGESYPEM 480 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + IR +++ G + RY+GI D++ +K + +L A D LTG+ NR F DRL + Sbjct: 481 LSIRALTDDAGTVYRYVGIFADLSNEKALEKKVLHLAQTDPLTGMANRVLFRDRLQQAIK 540 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + V + +D +KKIND LG +GD +L+ + +R+ + L+ D R SG+ Sbjct: 541 HAQRHVTT-LAVYSLGLDHFKKINDSLGHVIGDKILIEVAKRLKKCLRGEDSFCRHSGDE 599 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F ++ +++ + A + +I +P + E+ +TASIG A + +++ Sbjct: 600 FTLMTYGGADAMDASTVATKILNAIRLPFIVDGSELFLTASIGIALFPRDSSDDLGLMQK 659 Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 AE AM+ +K G + F S + + L A+E EL L Y P + L Sbjct: 660 AENAMHQSKKNGRDCFCYFSREFSQQAEQALHLTNMLHKALEKEELQLYYQPQVDLESRA 719 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I+ EAL++W + + G IS ++ + IAEE +I I ++LE++A+ I S + N + Sbjct: 720 IIAAEALLRWHNDEMGWISPAQMIPIAEESGLILPIGQWVLEQVAQQIRS-HYETNKEWL 778 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +NI+ K + ++ E + +I ++L +ES+++ + E + +G L + Sbjct: 779 PIAVNISVKQFITDDFIEMVMKIIDAHAIPARCLELELTESLMLADVELAVKKMGELHTL 838 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912 G+ L LDDFGT + L+YL P + +K + + +T A+ +S++ + +E Sbjct: 839 GVPLALDDFGTGYTSLAYLKRFPVNKIKLDRAFVTDIHHSKGDAALAKSLVAFTREMEFE 898 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +IA+ I EI + L MG Y Q + PL KL + Sbjct: 899 LIAEGIEEEIQGEYLKAMGFRYGQGYLYSRPLPKEEFSKLFTNQM 943 Score = 41.5 bits (96), Expect = 0.79, Method: Composition-based stats. Identities = 13/145 (8%), Positives = 36/145 (24%), Gaps = 10/145 (6%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 ++ S + + D + D+ + ++LG + G Sbjct: 260 RYKEKLESLSVELKNSLRTYQDLFNTVADGLVVRDVNGHFLMANQAFLSLLGYREEELIG 319 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + +D + R + + + + + +S Sbjct: 320 THCTKVC------KDKNCERFAEILQGRTIVFKSTH--TTRNGEKIPVEVNSTLVSFKGD 371 Query: 508 DILRYIGIANDITEQKKSLEGILCN 532 + DI E+ + E + Sbjct: 372 --TAVLSSVRDIRERLEKEEQLKQL 394 >gi|307153554|ref|YP_003888938.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306983782|gb|ADN15663.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 688 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 130/551 (23%), Positives = 249/551 (45%), Gaps = 28/551 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + V S + + + + + H FR Sbjct: 155 LASLVEFSPNPIIEINFAGEITYLNSAAIQKFKTIQKEKIN---------HP----IFRN 201 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 +L+ L E ++ Q I +++S DITE+K + Sbjct: 202 LLEQEFHQDGNLLIREIKI----GQEI-FEQHIHYLNDSQ----LIRSYIFDITERKLAE 252 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 E + A+ D LTG+PN+ F +L T L + N V+ ID+D ++ +ND LG + Sbjct: 253 EILHYQAYYDTLTGLPNKILFNQQLATALADA-HFKNTLLAVLFIDLDGFQNVNDTLGHS 311 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD +L S +R+ L D AR +G+ F I++ N + + A + + P N Sbjct: 312 TGDQLLRSFAQRLKTRLCAGDFFARWAGDEFTILVPYLENIEEAKNLAQRIFNILQQPFN 371 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + + + + ASIG A + + ++KNA+ A+Y +K G N+ + + +S R Sbjct: 372 ISDNLLYLKASIGIAIYPQDGEDAETLVKNADAALYRSKEIGKNNYQFYNPIITSKSCQR 431 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + I+ L A+E + L Y P I + +++G+EALI+W HP+ G IS ++F+ IAEE Sbjct: 432 LQIENLLHQALEKEQFLLHYQPQINIKTGQVLGMEALIRWQHPELGLISPTKFIPIAEET 491 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I I ++L + W+ PPI I +N++ + + ++ +T Sbjct: 492 GLIVNIGEWVLRQACLQNQFWQKMGL-PPIRIAVNLSPQQFQQPNFINVVTQILKETDLE 550 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 ++L +E+ +M N + + ++ + +G+ +++DDFGT S L YL IP +++K + Sbjct: 551 AHFLELEITETTIMENIDFACQVISYFQTMGVHISMDDFGTGYSSLGYLKQIPLNSIKID 610 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + + + +AI+ +++ + + +IA+ + + + L ++ C+ +Q + Sbjct: 611 QTFVKDLKEHPQDLAIISAVLAIGRGFNLRVIAEGVETQYQVDLLKKLECEEMQGFKFSK 670 Query: 943 PLGFNSILKLL 953 PL K L Sbjct: 671 PLTPEDAAKFL 681 >gi|120553240|ref|YP_957591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Marinobacter aquaeolei VT8] gi|120323089|gb|ABM17404.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] Length = 709 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 130/553 (23%), Positives = 256/553 (46%), Gaps = 17/553 (3%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466 + S + + D + + P + I G + + G H R+ +R+ Sbjct: 143 ASVFDRSHEAIVITDHLNHIIDVNPAFSRITGYSRQEVLGLNPSILSSGRHS--REYYRS 200 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + S + + E R + + + ++ I + Y+ +DIT K Sbjct: 201 MWQSI--EKTDHWRGEVWNRRKNGEEYVELLSISRVHLEEPGKHYYVAAFSDITALKNHA 258 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + A D+LTG+PNRQ +RL + + + +D+D +K IND LG Sbjct: 259 KELDRAANYDDLTGLPNRQLLEERLRSAKAHADRQKR-SLAICYLDLDGFKGINDELGHD 317 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD+ L + R+ L+ D +AR+ G+ F +++ +++ + S++ P Sbjct: 318 FGDEALRMVAERLTRSLRSGDTVARIGGDEFVLLIQGDHSEP----LYQRILTSVSEPFE 373 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--R 704 L ++E+ +TAS+G + + ++++A+ AMY AK +G N F + R Sbjct: 374 LADKEVNLTASLGVTLYPEDDTDAEGLVRHADQAMYAAKEKGRNQFHIFDPGQYAFRKER 433 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ A+EN E L + P +R+ D +++ EALI+W+HP+ G I+ F+ Sbjct: 434 RNQLMEISRALENEEFELYFQPQLRMADCQVIAFEALIRWNHPEKGLIAPGAFLPAVANS 493 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-Y 823 + + ++L+ + WR+ + + INI++ L+D + + ++ + Sbjct: 494 HLEIPLGQWVLKEAIHQMNRWREAG--EALAVSINISAPHLMDRKFVDYLEGYLQSHPEV 551 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 SP +I L ES + + +R+ +L R + +G+ + LDDFGT S L+YL +P D +K Sbjct: 552 SPGQITLEVLESTALEDTKRASNVLARCQSLGLQVALDDFGTGFSSLTYLRTLPVDVIKI 611 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + AI+ S+I +A+ + ++A+ + L MGC+ +Q +A Sbjct: 612 DQSFVRNMLTDANDRAIVESVIFLAQRFDHPVLAEGVETMDHAAALRDMGCNLVQGYGIA 671 Query: 942 SPLGFNSILKLLK 954 P+ ++L+ L+ Sbjct: 672 RPMPSGAVLEWLQ 684 Score = 56.9 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 2/135 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 D +R +L S ++ D G + ++ G + + + Sbjct: 11 ASDIDPKRLALVATASRNMALILDAGGCIEWVNQAFEEHTGYSLSAVRGKLPSQVLAGPD 70 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D D I + + A + +W+ P+ ++G ++ I + Sbjct: 71 TDPDTVSRIYRHLFRGEA--FEEDILHYTASGEPYWVHTYCTPVDGADGVEPGFVVIQTN 128 Query: 519 ITEQKKSLEGILCNA 533 I+++K S G+ A Sbjct: 129 ISDRKNSERGLRIAA 143 >gi|254491149|ref|ZP_05104330.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010] gi|224463662|gb|EEF79930.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010] Length = 1410 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 133/587 (22%), Positives = 253/587 (43%), Gaps = 17/587 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + +H L Y ER + + + + D V P + I Sbjct: 705 VASATDKHTLVILYDISERKKAEERLKMSGRVFNQAHEGILITDAKGLLVDVNPAFSEIT 764 Query: 439 GLASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + + G + + F + + + + G Q E + Q ++ Sbjct: 765 GYSREEVIGKNP---SILQSDKHSRVFFQEMWTSLEEK-GHWQGEIWNLKKNGQLFAELL 820 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 I + + G+ L Y+G+ +DIT+ K+ + A D LT +PNR F DR + Sbjct: 821 TISTLVDERGETLHYLGLFSDITQSKEQQHALELMAHYDMLTQLPNRTLFADRFHQAIAH 880 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S + +L V+ +D+D +K +ND G VGD +L+ + +RI ++ D +RL G+ F Sbjct: 881 SKRNHSL-LAVVFLDLDGFKPVNDRYGHDVGDQLLIEVAQRIKASIRQDDTASRLGGDEF 939 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L ++ +R +I +P L E I+++AS+G + + +L++A Sbjct: 940 VLLLNDISSVDHCERLINRIRHAIELPYQLDEDTISLSASLGITIYPLDDADADTLLRHA 999 Query: 678 ELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + AMY AK G F S + + + A++ +L L Y P + + +I Sbjct: 1000 DQAMYQAKLAGRQRHHIFDALHDQQISQQQNQYKAIQDALKADQLVLHYQPKVNMGTGQI 1059 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G+EALI+W+HP+ G + F+ + + + +++E + + + +W Sbjct: 1060 IGVEALIRWNHPEHGLVLPGRFLPAIQGTELEIHVGNWVIEHVMQQVEAWLRDGIEME-- 1117 Query: 796 ILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRK- 853 I INI+S L E + ++ + + ++L ES V+ + + ++ R Sbjct: 1118 ISINISSHHLQWKGFFEQLDHVLGRHPHVPANLLQLEILESSVLSDINKISSIINTCRNV 1177 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 +GI ++LDDFGT S L++L ++P D VK + S + I+ +I + + Sbjct: 1178 LGIRISLDDFGTGYSSLTHLRHLPVDVVKIDQSFVRDIIDDPNDYTIIDGVIGLTQAFHH 1237 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 +IA+ + L MGC+ Q +A P+ + P Sbjct: 1238 QVIAEGVETIEHGLMLMTMGCELAQGYVIAKPMPAKDFTEWFSNYKP 1284 Score = 58.4 bits (140), Expect = 6e-06, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 9/179 (5%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 Q A + + V+++ + + + R + S Sbjct: 557 LGLTVTSGPQLATLIKISSAVMVLFLLFAYWIYRLRKSGRALAQSETRLREVLNASPVPQ 616 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRR 476 + V T G + + +W R+ + + Sbjct: 617 GILNEVGQVTYLNQAFITTFGYTLADI-PTVNDWWQKAFPEKTHRETIQAEWQLHIEDSL 675 Query: 477 GRLQ----YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 R E V + +I ++++ + I DI+E+KK+ E + Sbjct: 676 NRSDTLKPVESDVVCKNGDKKTVICNATHVASATDK--HTLVILYDISERKKAEERLKM 732 >gi|52142967|ref|YP_083862.1| sensory box/GGDEF family protein [Bacillus cereus E33L] gi|51976436|gb|AAU17986.1| sensory box/GGDEF family protein [Bacillus cereus E33L] Length = 912 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 155/754 (20%), Positives = 302/754 (40%), Gaps = 20/754 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 165 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNTKSK----LFIFILVLTGFAITD 220 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P +S + + +I Sbjct: 221 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 279 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + + L L + + Sbjct: 280 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 339 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q S + + ER D + D + + +LG S Sbjct: 340 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQSGSILLGKDSA 399 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G D+ L +G R + RV+ + + + Sbjct: 400 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 455 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G + DIT+ K+ + I AF D +T I NR F L ++ + Sbjct: 456 MIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQG 515 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++ ID++++K IND +G ++GD VL + +R L LAR+ G+ F +++ + Sbjct: 516 -EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVHN 574 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ D + + + + ++ SIG A + I ++ +L++A++AMY Sbjct: 575 HT-EQQLLDLCENLFRITEKTFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 633 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + +++G EAL Sbjct: 634 AKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEAL 693 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G IS EF+ IAEE I +I + L+ R + W + + IN++ Sbjct: 694 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKMGINLS 752 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + ++I + + I L +E + M + + + L L+ G+ L++D Sbjct: 753 AIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSID 812 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P DT+K + + I+++II +A + +IA+ + Sbjct: 813 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVE 872 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + C IQ + + P + + L Sbjct: 873 TKEQLTVLQQNACYLIQGYYYSKPANEAAFINFL 906 >gi|94263701|ref|ZP_01287509.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455900|gb|EAT06059.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 833 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 127/584 (21%), Positives = 247/584 (42%), Gaps = 14/584 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ L SD + + + + V + I G + Sbjct: 257 TLRRALRYAIIRHRRDSDMRLAAAVIKHTREGVTITRSDGTIIEVNDAFCRITGYRREEV 316 Query: 446 HGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G R H DR+ + + + G E + + + + ++ I + + Sbjct: 317 IGQNPRLLQSGRH--DREFYAEMWRAL--GEEGFWSGEIWNKNREGRIYPQLLTISAVPD 372 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G Y+ I DI++ K+ + + A D LTG+PNR DRL + + Sbjct: 373 GTGKPAHYVAIFGDISKIKEQQQRLELIAHYDTLTGLPNRALLTDRLHHAMAQTFRRQ-T 431 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R V +D+D +K+IND G VGD +L +L R+ ++ D L RL G+ F I Sbjct: 432 RLAVAYLDLDGFKEINDTHGHDVGDFLLRTLAERMQHNMRESDTLGRLGGDEFIAIFQDL 491 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYH 683 + + + A+P++ E + V+AS+G + S+ + ++L+ A+ AMY Sbjct: 492 ADDETCLPLLQRLLNAAALPVSYQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQ 551 Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N F + + A+++ EL L Y P + + +VGLEAL Sbjct: 552 AKQAGKNRYHLFDTVQEVAMRGHHALLGRIKSALDDQELLLYYQPKVNMRSGVVVGLEAL 611 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G + F+ E+ + + ++L + + +WR + + + +NI+ Sbjct: 612 IRWQHPELGLMLPGYFLPAIEDHPLAVTVGDWVLATVLAQLAAWRRAGIL--LPVSVNIS 669 Query: 802 SKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ L + +Q +++ +++L ES + + ++ ++ + R +G+ L Sbjct: 670 ARQLQQGDFVAKLQQQLARQPEVPADQLELEVVESSALDDIDQVSGIMAQCRAMGVGFAL 729 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL +P T+K + S + +AIL ++ +A+ + +A+ + Sbjct: 730 DDFGTGYSSLTYLKRLPARTLKIDRSFVLDMLKDPDDLAILEGVLGLARAFKRQTVAEGV 789 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 + L ++GC Q A P+ + + + Sbjct: 790 ESAAHAESLLKLGCKVAQGYWFAKPMPMAEVAAWVAAYETKSRR 833 >gi|269836741|ref|YP_003318969.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphaerobacter thermophilus DSM 20745] gi|269786004|gb|ACZ38147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphaerobacter thermophilus DSM 20745] Length = 942 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 150/578 (25%), Positives = 269/578 (46%), Gaps = 10/578 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 L + + V S D++ + TP + +LG S + G Sbjct: 356 ALNRLASTDDLRRREASFRALVQHSSDMLLIVGLDSRIRYQTPAVERLLGYRSAELVG-- 413 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 R + +H +D +D +R E+R R AD + + + + Sbjct: 414 RRLVELVHPDDAQTVAAFIDRVAATQRRLGPAEWRFRCADGSWLHAETVATNLL-RDAHV 472 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + D+TE+K++ A+ D LT +PNR F+DRL + L + V+ Sbjct: 473 GGIVLTTRDVTERKRAEAEWRHRAYHDPLTNLPNRAFFMDRLQSSLAAGQRRSDA-VAVL 531 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +K++ND LG GD +LV L R+ L+ D++ARL G+ F I+L+ Sbjct: 532 FVDLDGFKEVNDTLGHEAGDRLLVELADRLRRALREQDVIARLGGDEFAIVLVDVVEPND 591 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A + + P+ L + I + ASIG A T + +L+ A+ A+Y AK G Sbjct: 592 AVQTAERILDRLREPVLLDGQPIPIRASIGIALGTPGRDRPDTVLRQADSALYAAKRAGK 651 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + + R + +L A+E+ L L Y P++ L+D I +EAL++WDHP Sbjct: 652 SCYALYDEQLARPALEQGELARELRAALESGRLTLYYQPLVVLLDGRIGEVEALLRWDHP 711 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLL 806 + G + S+F+ +AEE +I I + LE R + SW+ + P+ + +N++++ L Sbjct: 712 QRGLLLPSQFLDLAEETGLILPIGYWALEEACRQVRSWQKKRPSTLPLTLAVNLSARQLR 771 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 + + + ++++T + P +++ SE+VV+ PE + L LR +G+ + +DDFG Sbjct: 772 EPGVAAAIGRVLARTDFDPRHLRVEVSEAVVLAEPE-AVKTLQALRALGVRIAIDDFGAT 830 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924 + L+ L +P D +K +G + E A++R + AK TIIA+ + Sbjct: 831 AAALTPLTQLPVDALKIDGVWVATLGEGARESALVRGAVAFAKAKGLTIIAEGVETAAQA 890 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 ++L +G D Q + + PL ++I +LL+ Sbjct: 891 RQLRELGFDRGQGYYFSGPLTGDAIYRLLRGETCGASR 928 >gi|188580154|ref|YP_001923599.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi BJ001] gi|179343652|gb|ACB79064.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi BJ001] Length = 685 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 137/598 (22%), Positives = 256/598 (42%), Gaps = 23/598 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 + TV + A + R + A+ +D + Sbjct: 101 AAMCAETTALTVAADIAALKRSEAVLSERIARLNAALDTLSLGFLLYDRDHRLLVVNRRY 160 Query: 435 ATILGLASGSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRA-AD 489 I L SG++ R L + R+ + G +++ D Sbjct: 161 HEIYRLPSGAVTPGMSAREVLRRNVQAGSEAERSEAEQLAEIGALMGSGAAPAQIQHLPD 220 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 + + I+P+ ++ + + TE+ + I A D +T +PNR + Sbjct: 221 GRVVAVE--IQPIDGG-----GFVAVYEEATERWNAEARIAHMARHDAVTDLPNRVLLRE 273 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 R+ + + + ++ +D+D +K++ND LG AVGD++L ++ R+ ++ D + Sbjct: 274 RIEGAITQARRETG--FAMLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACVREVDTV 331 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL G+ F II + A A + ++ P L + V SIG A + Sbjct: 332 ARLGGDEFAIIQAAVTTPADAATLAQRILDVVSAPYALTHHSVIVGVSIGIALAPGDGLE 391 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPI 727 + +++ A++A+Y AK G F R ++ DL A E L Y PI Sbjct: 392 AERLMQCADVALYRAKGDGRGVFRFFEAEMDARLQARRSLELDLRAAFEAEAFDLHYQPI 451 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 L E I G EAL++W HP G +S +EF+ +AEE+ +I + ++L R R+ W + Sbjct: 452 YDLSAERICGFEALLRWTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREAAGWPE 511 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + + +N+++ + L ++A ++++ R++L +ESV++ N + + Sbjct: 512 -----GLKVAVNVSAAQFTSSALIGTVKAALAESGLPARRLELEITESVLLVNGSATVAI 566 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPM 905 L LR +G + +DDFGT S LSYL PFD +K + S T + I+R+++ + Sbjct: 567 LHGLRNLGTRIAMDDFGTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSL 626 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 A ++ T A+ + + L GCD +Q + P+ ++ LL+ + Sbjct: 627 ASSLGMTTTAEGVETPEQLAWLREEGCDEVQGYLFSPPVPACALPALLETWNGRTRRA 684 >gi|288942799|ref|YP_003445039.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288898171|gb|ADC64007.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Allochromatium vinosum DSM 180] Length = 1030 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 168/798 (21%), Positives = 308/798 (38%), Gaps = 45/798 (5%) Query: 202 LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261 L + T + L G + LV + + L A + + Sbjct: 229 LILINTFLAASAGGLTAMGYSYAVHRQLIVTEPLNGIIGGLVGITASCHLQEPAFAALIG 288 Query: 262 SSSLIIFLFMYLHWNRW-------HAKVGYITFSGIACIAILFCMSF---YYPMVTASIA 311 + + ++ R LF A + Sbjct: 289 AVAGLVVSLGTATLERLRIDDAVGAIPAHLFAGIWGTLAVALFAPVTDFELTGGRLAQLE 348 Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPA-----WILIFIWFIGLWMAITKRLDNDI 366 TL + + F + + + + + + G I L Sbjct: 349 IQTLGILAVGAYAFGVSLAALWLLDRLYRLRVDPESERLGLNVAEHGASTEILDLLTEMD 408 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLA--------------TGYFSQGIFSDGERQSLAVL 412 Q + V Q + + + R+S + Sbjct: 409 TQRRHGDFSRRVFAEPHTEVGQIARQYNHVLQRVSEEIHKREAILRDLTASETRKSAILD 468 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 D + D + P A LG + ++ G + I R + L Sbjct: 469 AVLDCILTIDHEGHLLEINPAAARTLGCSRRAVLGRPLADI-LIPDEARPAYDEALAQGF 527 Query: 473 GYRRGRLQYEFR----VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 GR R ++ + + I + + G + A DIT Q++ Sbjct: 528 VTE-GRFVVNQRSHTILKRISGETFPAELTIARVKS--GPYPEFNFHARDITRQREVQRR 584 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LTG+ NRQ F L+ L + + V+ +D+D++K IND LG A G Sbjct: 585 LHQLAHYDGLTGLANRQFFRQNLSIHL---MGPEPAQIAVLFLDLDRFKTINDTLGHAAG 641 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L ++ R+ +L+ D++AR G+ F + L+ + + A + +A P L Sbjct: 642 DQLLRTVAERLRSVLRSEDLVARWGGDEFVVALLGVQDRDAVMHKAADIIARLAEPHPLA 701 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI- 707 R I V SIG A + ++ +++NA+LA+Y AK G H + F + Sbjct: 702 GRSIRVPTSIGAALYPEGGTSADLLIRNADLALYRAKSNGRGHCQLFDPVLASEISERLE 761 Query: 708 -KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 + DL A++ EL L Y P + + IVGLEAL++W HP G +S + F+ I EEL + Sbjct: 762 FENDLRDALDRGELELFYQPQVEVGSGRIVGLEALLRWRHPGKGMVSPTVFVPILEELGL 821 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I+ + ++L R WR++ PP I +N++ + L E ++ ++++ + + Sbjct: 822 IELVGEWVLRTACRQHRVWRERGLSPP-RIAVNVSGRQFLRLGFAETVERILTEEGTAVT 880 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +E+V+ + + L RL+++G+ + LDDFGT S +SYL P DT+K + + Sbjct: 881 AVELEITETVLAHDTDVCIETLRRLKRLGLEIALDDFGTGYSSMSYLKRFPVDTLKIDRA 940 Query: 887 LMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + AI +I+ +A+ + +A+ + ++ L R GC + Q P+ Sbjct: 941 FVAECDVNAEDAAICTAILSLARGLGLKTLAEGVETPGQLEFLRREGCQFYQGFFFRRPM 1000 Query: 945 GFNSILKLLKERFPLVKN 962 + +LL E L+ + Sbjct: 1001 PVEEVERLLAEDVSLISS 1018 >gi|298485836|ref|ZP_07003914.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159660|gb|EFI00703.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 705 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 142/585 (24%), Positives = 263/585 (44%), Gaps = 12/585 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L + + D + + E ++R Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + +++D +K IN+ G +GD+VL+ ++ R+ E L D L R+ G Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSHRLSECLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ + +R ++ +P L + I +TASIG A + S E++ Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K+A AM AK G + + R+ ++ L AV+ +VY P + L + Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLAE 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 ++ GLEAL++W P IS + F+ + E L +I + ++++ + I W+ Sbjct: 476 NQVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 G+S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + L CD IQ ++ PL + L+ Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699 >gi|325982688|ref|YP_004295090.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212] gi|325532207|gb|ADZ26928.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212] Length = 891 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 133/437 (30%), Positives = 235/437 (53%), Gaps = 6/437 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E K++ + I+ A D LTG+PNR DR+ +L + V+ ID+D +K IN Sbjct: 440 EGKEAEKRIIEMATHDALTGLPNRYLLRDRIEQVLVHDTRLQR-QMAVLFIDLDHFKTIN 498 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L ++ R+ ++ D +AR G+ F ++L S SL A A + S Sbjct: 499 DSLGHEIGDLLLKAVADRLKSCVRNEDTVARQGGDEFIVVLNSIAESLDAAKVAQKILDS 558 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 A+P ++ + E+ + SIG A + + + +LKN+++AMYHAK G N+ + F Sbjct: 559 FALPFHIHKNELHIDGSIGIAVFPDDGVNAETLLKNSDVAMYHAKKNGRNNYQFFTDELN 618 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 +R ++ DL A+E +EL L Y P++ + + G+EAL++W HP+ I+ +F+ Sbjct: 619 KSAYERHILGLDLRYALERNELLLYYQPVMDMPSHNLYGVEALLRWRHPEQKLITPDKFI 678 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I I +++ + I +W++Q P + IN++++ D +L + + ++ Sbjct: 679 NLAEETGLIIPIGEWVIRTVCLQIKAWQEQGFYVP-RVAINLSARQFRDKDLIKNISRIL 737 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 S+T I L +ES+++ N E+ L RL +G+ +++DDFGT S LSYL P Sbjct: 738 SETGVKAKHIALEITESMLIDNIEKVVETLNRLDAMGLHISIDDFGTGYSSLSYLKQFPI 797 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 T+K + S + + I+ +II MA ++E +IA+ I E + L C++ Q Sbjct: 798 HTLKIDRSFVRDLVTDKNDRTIVAAIIAMAHSLEMEVIAEGIEIEEQLDFLVTQKCNHYQ 857 Query: 937 DSHVASPLGFNSILKLL 953 + + P+ + I +L Sbjct: 858 GYYFSKPVTVSEIELML 874 >gi|153007631|ref|YP_001368846.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC 49188] gi|151559519|gb|ABS13017.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ochrobactrum anthropi ATCC 49188] Length = 707 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 141/580 (24%), Positives = 244/580 (42%), Gaps = 18/580 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTPDIATILGLA 441 ++Q ++ V V+ D+ V + G Sbjct: 123 LAIVQDRTELAEANRQANHAQTLLDSLVNNLPLGVFVKDMHDDGRYVLYNQAASAASGQP 182 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G L D RRG L E ++ D M I Sbjct: 183 VDEAIGSTDLDLF---PEREATVIIQQDRTAMRRRGVLNVERKIERKDGTSRTMRIIKCS 239 Query: 502 MSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + G + IG+ DITE+++ E + A D+LTG+PNR F + ++L Sbjct: 240 IPPVEGNEPRYLIGLVEDITERREIEERMAHIAMHDSLTGLPNRAYFAHHVESLLK--KG 297 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D+ + +DID +K IND +G GD +L + RR+ ++ + +ARL G+ F I+ Sbjct: 298 GDSEPFALFYLDIDHFKNINDNIGHQAGDQLLQEVARRLKQITTSDEFIARLGGDEFAIV 357 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 S +IA FA + + P L+ V S+G A +++NA+LA Sbjct: 358 YRSGT-LAQIAMFADRILSAFQDPFELVRNSEFVACSMGIAQAPLHGDNPDVLMRNADLA 416 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y +K G ++ S + + +L A+ + + L Y PI L +I G Sbjct: 417 LYASKSGGRRTFRFYQHSLRLAAEKRYVMTGELRQALLDEQFELHYQPIFNLESGKISGF 476 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP G +S +EF+ +AEE +I I ++L R+ + W + I + + Sbjct: 477 EALIRWRHPDRGMVSPAEFIPLAEETGLIGPIGDWVLRTACREAVLWPE-----DIKVSV 531 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ L + + SP R++L +ESV + N + + LL LR++G+ + Sbjct: 532 NLSPVQFSQTTLLHSVTDALEAARLSPDRLELEITESVFLSNSKNNIELLFELRRLGVRI 591 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 +DDFGT S LSYL PFD +K + S ++G + +AI++++ + A+ Sbjct: 592 AMDDFGTGYSSLSYLRSFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGAGFNIVTTAE 651 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + ++ L +Q P+ + ++ R Sbjct: 652 GVETAQQLERLKTERFGEVQGFLTGRPMPAGDVHSFIQNR 691 >gi|95929175|ref|ZP_01311919.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans DSM 684] gi|95134673|gb|EAT16328.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans DSM 684] Length = 709 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 134/501 (26%), Positives = 237/501 (47%), Gaps = 16/501 (3%) Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-- 527 + R ++Q + + + + + + N D+ DI+E + E Sbjct: 209 ALAKNRATKVQQNY--QDENGENVSVEKTATLLRNRQDDVTGIFLTCRDISENMRQKEDI 266 Query: 528 -----GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + D LTG+P R F D L + + ++ ++ +D+D++K IND Sbjct: 267 AYKEMQLEQILHYDTLTGLPQRDFFFDLLHSHMVGCQKNNRT-LALLYLDLDRFKNINDT 325 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD VL + +R+ ++ D L+R+SG+ F I L +N ++ A I+ Sbjct: 326 LGHTVGDQVLQEVAQRLQNNIRITDNLSRMSGDEFLITLDPADNLSEVTQLAQKFLSVIS 385 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700 +P+ + +TASIG + + + ++L A+ AMY AK G + + ++ Sbjct: 386 VPMKIEHHRFHLTASIGISLFPGDATSPEKLLSCADSAMYRAKESGRDAFRFYKPHMNEK 445 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + ++ +L LA+E +L L Y P L ++VG+EAL++W+HP+ G I EF+ Sbjct: 446 AQGLLWLETELRLAIEQEQLELHYQPQYDLNTGQLVGMEALVRWNHPEKGMIPPGEFIPQ 505 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I + ++L R I +W + PI + +NI++ +L + + L+ Sbjct: 506 AEETSLIIPLGEWVLNTACRQIAAWHAM-GISPIRMAVNISAVQFYRIDLAQMVAKLLDH 564 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + ++L +ESV+M + E + + +L +GI L++DDFGT S LSYL P T Sbjct: 565 YGLPATLLELEITESVLMDDVEAAAETMNKLTAMGIQLSIDDFGTGYSSLSYLKRFPIST 624 Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + E+ AI SII +A ++ ++A+ + + L R C Y Q Sbjct: 625 LKIDRSFINDVTINEQDAAIALSIISLAGHMGIEVLAEGVETVEQLSFLQRHACQYGQGY 684 Query: 939 HVASPLGFNSILKLLK-ERFP 958 PL I + LK P Sbjct: 685 LFNRPLPAKDIERQLKTAHLP 705 >gi|258405308|ref|YP_003198050.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfohalobium retbaense DSM 5692] gi|257797535|gb|ACV68472.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfohalobium retbaense DSM 5692] Length = 738 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 140/571 (24%), Positives = 270/571 (47%), Gaps = 24/571 (4%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 E S + S D ++ D +L +G + G ++ I+ D Sbjct: 164 SKEISSFIIENSPDFIYLLDDSGFFTYVNRKAYELLNYHNGELLG--LHYSSIIYEGDLH 221 Query: 463 NFRTILDSFVGYRRGRLQYEFRVR--------AADNQFHWMIIRIRPMSNSN----GDIL 510 + + + R E R++ F + + R M + + + Sbjct: 222 KAQYVFNERRTGERATQGVEIRLKKFSENTLDNETPHFIYTELFARGMYRDDSVRRQNFV 281 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 G+ D+TE+ +S + I + + D+LT +PNR F DRL L + + + +++ Sbjct: 282 GTYGVIRDLTERIRSEDLIRFHLYHDSLTSLPNRTLFNDRLHMALLHAKRNKK-KFSLLF 340 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D +KKIND LG GD+VL ++ + + + ++ D ++R+ G+ F I++ + + + Sbjct: 341 LDLDNFKKINDNLGHQSGDEVLQNVAKILKKSVRESDTISRIGGDEFVILIENLDKLSET 400 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + + P+ ++E+ +TASIG A + T ++++ A++AMY K + N Sbjct: 401 DKICYKILNAFKEPMYCQDQEVRITASIGIAVYPEHGQTKEQLMRRADMAMYKIKSKTQN 460 Query: 691 HVESFRVSSFRSDR-----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 + S + ++ DL +A+EN+EL + Y P + +E IVG EAL++W Sbjct: 461 SFCYYSNKDNGSCYKNLPSIELENDLYMAIENNELAMFYQPQVDCENETIVGFEALMRWF 520 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HPK+G +S S F+ IAE+ +I + + L++ +D + ++ P+ NI++K + Sbjct: 521 HPKFGLVSPSVFIAIAEKNGLINELGRWGLQQTCKD-ALYFEEKCAEPMKFSFNISAKQI 579 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + ++++ + I+L +ES VM N L LRK IS+ +DDFG+ Sbjct: 580 HQSNFIDETLSIVNSFDLKENSIELEITESSVMHNLNAVSYFLMELRKSNISIAIDDFGS 639 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL + DT+K + S ++ +K+ I +I MA ++ ++ + + Sbjct: 640 GFSSLSYLQNLFVDTLKLDRSFISNADLNKKKRTIFTAIQSMAHSLNVDLVIEGVENFSQ 699 Query: 924 IKELTRMGCD-YIQDSHVASPLGFNSILKLL 953 + L +G D IQ + + P+ + K L Sbjct: 700 KQYLKDLGLDSIIQGYYYSKPMSLEDLEKSL 730 >gi|222110676|ref|YP_002552940.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] gi|221730120|gb|ACM32940.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax ebreus TPSY] Length = 740 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 130/617 (21%), Positives = 253/617 (41%), Gaps = 50/617 (8%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +I + + + + + + + R ILG Sbjct: 129 SIWIIDDIDEQKRAQAQLQAALWEKQVLFDSAMVGIVFLQ-ERRMTRCNRHFEQILGYGP 187 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + G + + V + + + +R D + +R + + Sbjct: 188 GELAGSSSRRWYLSDEDWHEAGVRCYAPLVQGQA--FEGQMVLRTRDGRAIECEVRSKAV 245 Query: 503 SNSNGDILRYIGIANDITEQ---------------------------------------K 523 + + I I D++E+ + Sbjct: 246 -DPSNVAQGSIWIVMDVSERLRIQRQLAGMHGELEQQVRDRTRELQETVGNLHREIQDRQ 304 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + E I A D LT +PNR +R + + VM +D+D +K +ND L Sbjct: 305 RDQERIYWMAHYDALTELPNRVLLAERGQDAIRHAQES-GAPLAVMFLDLDNFKHVNDSL 363 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G +GD +LV + +R+ ++ D +ARL G+ F ++L N+ A A M+++ Sbjct: 364 GHRIGDALLVEIAQRLRTTVRQRDTVARLGGDEFVLLLPG-ANAQGAARVAAKMQEAALQ 422 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702 P+++ E+++ S+G A + ++++A+ AMY AK G N F + Sbjct: 423 PVHIQHHELSLALSMGIALFPEHGSDFETLIQSADTAMYRAKADGRNSFRFFTPTMQAQS 482 Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + + L A+E ++L L Y P + + + G+EAL++W HP+ G +S +EF+ +A Sbjct: 483 ARALQLTNALRRALERNQLSLHYQPQVSIATGRVCGVEALLRWHHPELGAVSPAEFIPVA 542 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ I I ++L + +W Q P + + +N+++ +L E + L+++ Sbjct: 543 EDTGQILPIGEWVLRTALAQLRTWHSQGL-PALTMAVNLSAVQFRQPQLLELVDRLLAEY 601 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P ++L +E+V + +P + + +L G+ L++DDFGT S LS+L + Sbjct: 602 GVQPHLLELELTENVAVADPHAAIATMDQLHAKGVRLSMDDFGTGYSSLSHLKRFQIYRL 661 Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + AI+ +II MA+ + A+ + + L GCD Q + Sbjct: 662 KIDQSFVRDLDHDGNDRAIVSAIIRMAQALGMRTTAEGVETAHQLTFLREQGCDEAQGFY 721 Query: 940 VASPLGFNSILKLLKER 956 + PLG + + L +R Sbjct: 722 FSRPLGAPHLQQYLLQR 738 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 16/148 (10%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIH 457 + Q + +G + R V A I GL G +H Sbjct: 19 AMQRVLREQQTLLDSAGVGIVFIR-NRALVRCNQRCAEIFGLPSPEDAIGRSS---EALH 74 Query: 458 IND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + R+ R + + + E +++ D Q W + R ++ + I Sbjct: 75 PSRGAFRELGRAAYPTLARGQA--YRTERQLKRCDGQLFWAHLTGRLINPRDSR-EGSIW 131 Query: 515 IANDITEQKKSLEG-----ILCNAFQDN 537 I +DI EQK++ D+ Sbjct: 132 IIDDIDEQKRAQAQLQAALWEKQVLFDS 159 >gi|66044349|ref|YP_234190.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255056|gb|AAY36152.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 705 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 139/583 (23%), Positives = 260/583 (44%), Gaps = 12/583 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L + + D + + E ++R Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + ++ID +K IN+ G +GD+VL+ ++RR+ L D L R+ G Sbjct: 297 MTQAAIS-RWKLAALTVNIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ +R ++ P + + + +TASIG A + S E++ Sbjct: 356 DQFALILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM A+ G ++ + R+ ++ L AV N +VY P + L + Sbjct: 416 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + I GLEAL++W P +S + F+ + E L +I + ++++ + I W+ Sbjct: 476 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTAHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + + L CD IQ ++ PL + L Sbjct: 655 LQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFL 697 >gi|296158392|ref|ZP_06841223.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia sp. Ch1-1] gi|295891336|gb|EFG71123.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia sp. Ch1-1] Length = 769 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 142/569 (24%), Positives = 255/569 (44%), Gaps = 13/569 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 +Q + E L V + + + P IL + I + Sbjct: 192 MAQRLAHSEEHHRLVVDHLIEGIVVQSRAGVVLACNPSAQRILRATPQIVGRSIHTVMVR 251 Query: 456 IHINDRDNFRTILD---SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILR 511 + D + + + L V W+ + P+ + Sbjct: 252 AYHEDGSVVTEAVRPTTQVLATGKPMLGVTIGVELIGGDIVWITENVVPIIKPGESEPSS 311 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL---SATDDNLRPTV 568 + DI +++ + A +D+LTG+ NR +RL + L S + V Sbjct: 312 VLISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTSSGMGELASVAV 371 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D +KK+ND G GD +L S+ R+ + D LAR+ G+ F I++ + N+ Sbjct: 372 LFVDLDGFKKVNDTAGHEAGDSLLCSVAERLAACISTEDTLARVGGDEFVIVVSAYENTG 431 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + A + IA+P + + E + ASIG + + + +L+NA+ AMYHAK RG Sbjct: 432 HLIGLAQRILDMIAVPFAVADNEYYLGASIGISRFPEDGQDVATLLRNADSAMYHAKQRG 491 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N+ + F R + I++ L A+ +EL LVY PI+ D +G EAL++W + Sbjct: 492 RNNFQFFTAELNRQLQRRFTIEQSLRRALAANELSLVYQPIVDSHDGRTIGAEALLRWYN 551 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 + GN+S EF+ +AE+ +I I F+L R + WR P + + +N++ + Sbjct: 552 SELGNVSPVEFIPVAEDAGLIVEIGNFVLARACEQVAQWRRTLA-PELIVAVNLSPRQFN 610 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L E +Q + +T P+ ++L +E ++M + E +L L +G+ +++DDFGT Sbjct: 611 D-GLVERIQRCLIQTGLEPAALELEITERLLMSDSETVLPMLSALNAMGVRISVDDFGTG 669 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL P +K + S + G IAI ++++ MA ++ + A+ + Sbjct: 670 YSSLSYLKRFPLHNLKIDRSFVVGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQA 729 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953 L + CD Q + P+G ++ + L Sbjct: 730 AFLRAIDCDKQQGYFYSRPVGASAYARSL 758 >gi|218528940|ref|YP_002419756.1| diguanylate cyclase/phosphodiesterase [Methylobacterium chloromethanicum CM4] gi|218521243|gb|ACK81828.1| diguanylate cyclase/phosphodiesterase [Methylobacterium chloromethanicum CM4] Length = 714 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 148/692 (21%), Positives = 286/692 (41%), Gaps = 33/692 (4%) Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + +A + + R+T+ ++ ++ R++ Sbjct: 28 GRHLLRTGSGLCLTVAGFSATALMASLSAEPTLRLTVVGGATILALVLVCLILRRLARSL 87 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF------TVIQHVLA 392 +A+ + + L G L+ ++ + A Sbjct: 88 TRAMQAAESIAPASAPAVALRTLPASASGEAPLPDGRRLLADRPRLGDGADPAILTDIAA 147 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---PI 449 + R + A+ +D + I L G++ + Sbjct: 148 LKLREDALSDRIARLNAALDTLSLGFLLYDRDHRLLVVNRRYHEIYRLPPGAVTPGMSAL 207 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---FRVRA-ADNQFHWMIIRIRPMSNS 505 + + D+ + D + + + +++ AD + + I+P++ Sbjct: 208 EVLRSNVGVGDQPD--RSEDECIAEIGVMMGADAVPTQIQHLADGRVVAVE--IQPIAGG 263 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 ++ I + TE+ + I A D +T +PNR +R+ + + + Sbjct: 264 -----GFVAIYEEATERWNAENRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETG-- 316 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D +K++ND LG AVGD++L ++ R+ L+ D +ARL G+ F II S Sbjct: 317 FAVLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVA 376 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A A + ++ P L + V SIG A + +++ A++A+Y AK Sbjct: 377 TPADAATLAQRILDVVSAPYALTHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAK 436 Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G F ++ + R ++ DL A E L Y PI L +E I G EAL++ Sbjct: 437 DDGRGVFRFFEAQMDARLQARRALELDLRAAFEAEAFDLHYQPIYDLAEERISGFEALLR 496 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G +S +EF+ +AEE+ +I + ++L R R+ +W D + + +N+++ Sbjct: 497 WTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREASNWPD-----GLKVAVNVSAA 551 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L +QA ++++ S R++L +ESV++ N + +L LR +G + +DDF Sbjct: 552 QFTSIALIGTVQAALAESGLSARRLELEITESVLLVNGSATVAILHGLRDLGARIAMDDF 611 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL PFD +K + S T + I+R+++ +A ++ T A+ + Sbjct: 612 GTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSLASSLGMTTTAEGVETP 671 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L GCD +Q + P+ + + LL Sbjct: 672 EQLAWLREEGCDEVQGYLFSPPVPASELPALL 703 >gi|103485959|ref|YP_615520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] gi|98976036|gb|ABF52187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] Length = 878 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 165/753 (21%), Positives = 314/753 (41%), Gaps = 46/753 (6%) Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297 F+++L+ + + + S++ + + + SG+ C A L Sbjct: 27 FVAQLLRVATLWHYVLIGRLLAFAVFSVLPGVAGFFD----QPSLWLTMASGLMCDAALT 82 Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGM---------------KGYERAVLLIP 342 M ++A +L + + ++ + Sbjct: 83 VMGQAMRRPRPALAARARQVAMLSAALVALGTLFNAAAMFAAIAMPDGGRHFDAFTAIQI 142 Query: 343 AWILI----------FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 +L+ + +A L AL G + L ++++ Sbjct: 143 GSLLVAASAVSIVRPLFFSFSGAVAFGGALGVASWPFALAGAVFLALLIVMMREDVRHQR 202 Query: 393 TGYFSQGIFSDGERQSLAV-----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + ++++L + W+ D V +P +A LG + G Sbjct: 203 RATAAARRAISEQQRALNLMRDFERAGRGWFWETDRDGQLVYISPTVAARLGRPLAELIG 262 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + I + ++ L + R + + A + W I P+SN+ G Sbjct: 263 RPFTDIIRKRIGNDESEERTLGFSLSSRTPFKELTVQAAAP-GEERWWSISGHPISNALG 321 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + G D+T+QK+S I A D LTG+ NR+ D L L Sbjct: 322 HFQGFRGSGTDLTDQKRSEREINQLARYDTLTGLANRRHITDLLERALRTHIGQPQP-CA 380 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++++D+D++K +ND LG VGD +L + R+ +++ + RL G+ F I+L N+ Sbjct: 381 LLLMDLDRFKAVNDTLGHPVGDQLLQQVAGRLTQIVGDKGQVGRLGGDEFQIVLPQLNHP 440 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 KIA A A+ S+A P + ++ + +SIG A +++S +++NA+LA+Y AK Sbjct: 441 EKIAGIANAIILSLAKPFAIEGEQVRIGSSIGIAVSDGEGVSASALVRNADLALYAAKDA 500 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + + + S+R I++ L A+ EL L+Y PI+ + E I G EALI+W+ Sbjct: 501 GRGVYRFYADAMHNQASERKAIEDALRDALAKDELRLLYQPIVDVATERISGFEALIRWN 560 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 H G IS +F+ IAEE +I I +++ I + + +N++ + Sbjct: 561 HATAGTISPEKFIPIAEESNLIVPIGEWIIRTACAAIATL-----GSGYRVAVNVSPRQF 615 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + L + + +S P +++L +E V + + + +L++ G+ L LDDFGT Sbjct: 616 ANEALPATILSAVSGAGIRPEQLELEITEGVFLDESAENLAMFRKLKRTGVRLALDDFGT 675 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEI 922 S L YL PFD +K + S + G+ +K AI+ SI+ +A ++ A+ + Sbjct: 676 GYSALGYLKKAPFDKIKIDQSFVLGAADKSSMNAAIIASIVGLASALDMETTAEGVETHD 735 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 D+ + +GC ++Q P+ ++ LL+ Sbjct: 736 DLALVRSLGCSHVQGYIYGQPMQLAEVVGLLRA 768 >gi|163941433|ref|YP_001646317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] gi|163863630|gb|ABY44689.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] Length = 906 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 158/725 (21%), Positives = 316/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + ++ I ++ Sbjct: 191 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 250 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V + + L +I +K + LI + F++ + Sbjct: 251 EDDNSHKNYFIVNPILGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + R+ ND + L + V + S+ + ++ Sbjct: 311 HSIV--RMQNDTLTKRLQV----FNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 365 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 423 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L + + T + ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + +S+ P + E ++T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFESMEKPFVIHEHKLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG + + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGISIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ I+EE I I Sbjct: 659 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPISEETLQIIPIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + ++ T S + L Sbjct: 719 WTLQQACEQMKRWHA-LGYSQLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + E + I+++II +A + ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 838 TCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYANAFT 897 Query: 951 KLLKE 955 KLL+ Sbjct: 898 KLLEN 902 >gi|218888047|ref|YP_002437368.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759001|gb|ACL09900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1251 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 119/440 (27%), Positives = 232/440 (52%), Gaps = 5/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K+ E + A D LTG+PNR LDR+ + +D+ R V+++D+D++K IN Sbjct: 761 ERKQGEEMLTHLALHDPLTGLPNRALLLDRIERAIQRRRRNDSYRFAVLMLDLDRFKFIN 820 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G GD++LV + RR+ +++ D +ARL G+ F ++L ++ +I + + Sbjct: 821 DSHGHTTGDNLLVEVARRMRPVVRAGDTVARLGGDEFALLLEDVDSPRRIVQITRRLLAA 880 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P+ + + + +ASIG T T+ +L++A++AMY AK +G F S Sbjct: 881 LERPVRMGAKVVRTSASIGMVLRTQGYDTADALLRDADIAMYQAKAQGKGRFRVFNQSMH 940 Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R + ++ DL +A+ +LYL Y P++ + ++G EAL++W HP G + + F+ Sbjct: 941 RHTMEMMTLEGDLSMAMRRKQLYLEYQPVLAVDGARLLGFEALVRWRHPTEGAVPPARFI 1000 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817 +AEE +I I ++LE+ A + WR +++ +N++++ L + + Sbjct: 1001 PMAEETGLILRIGQWVLEQAAATLARWRATLPGAHDLYVSVNLSARQASQPNLTGRVARI 1060 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +S T P +KL +E+ +M +P+ + L LR++G+ + +DDFGT S L+YL P Sbjct: 1061 LSDTGLPPEALKLEITETAIMKDPDGALQRLEALRRLGVGIGIDDFGTGYSSLAYLQRFP 1120 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S ++ + I+R+++ + +++ ++A+ + + +GC + Sbjct: 1121 VDTLKVDRSFVSAVAGDAENREIVRTVVTLGRSLGLHVVAEGVETAEQFAIVAELGCHSV 1180 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q H + P+ + + Sbjct: 1181 QGYHFSRPVAEERAVAFIAA 1200 Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 1/141 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 I+ + + + +R +A+ + D +W+W++ + + +P ILG A Sbjct: 465 IQTIRDITERHNQMRELEKSRQRYDMAISATNDGIWEWELDTNTLYHSPRCLEILGRAPD 524 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + +H DR T + G R ++EFR+R D + W++ R Sbjct: 525 ATL-SPMAIAAILHPEDRLRVLTEVRRITGEDAERFEHEFRIRHTDGTWRWVLARGAARR 583 Query: 504 NSNGDILRYIGIANDITEQKK 524 G + R G DIT+ K+ Sbjct: 584 GPGGRLNRVAGALADITDHKQ 604 Score = 58.4 bits (140), Expect = 6e-06, Method: Composition-based stats. Identities = 25/240 (10%), Positives = 64/240 (26%), Gaps = 13/240 (5%) Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT----LASIVLYYTYFIIYH 329 R ++ + A + + P + + + +A+ + + Sbjct: 46 DTPRRIRRLRTPPHPRLVLHAFRLPVLPFVPRLRLPLPTLIDIGAVAAAAIVTPIATVRP 105 Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389 E AV + +L + + + + + Sbjct: 106 AWAAVEGAVPWTSSALLFGLAAGLVLGLLAGLRLRRGKAAGAKQDVQRGALPHAHAAASG 165 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGP 448 + + E+ + ++ P+ A I G + M Sbjct: 166 QADASTQAVDLDRAREQYHAIFTNAPVGIFRVTPEGRYENVNPEYARIWGCPTTEEMLEC 225 Query: 449 IRNWLPYIH--INDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNS 505 + + ++ DR F L + GR+ + E R++ D W ++ R + Sbjct: 226 VSDIPRQMYANPADRQRFVGALQA-----TGRVDRMELRLKRRDGSLFWGLVSARLVRGP 280 Score = 51.1 bits (121), Expect = 9e-04, Method: Composition-based stats. Identities = 22/223 (9%), Positives = 49/223 (21%), Gaps = 26/223 (11%) Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 ++ G+ PA + N + G + Sbjct: 267 LFWGLVSARLVRGPAPAQAAQTGQIAKTGQTAGTGVTNGTYRADAKAGNAPAEVDYIDGF 326 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + + R + D V D R + + + G ++ M Sbjct: 327 VLDITEQKAMQDQLSEAWRRLRDIIDFLPDAVLVLDASRRVIAWNRAMEEMTGHSASEML 386 Query: 447 GP----------------IRNWL---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 G + +W + F D + Sbjct: 387 GRGNFAYALPFYGERIPLLGDWFFSPDMPQPSHYTRFSEHGDKLAAEAYVPTLF------ 440 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + + + + G + I DITE+ + + Sbjct: 441 -GGRGAHVWTVASALRDGEGRLNGVIQTIRDITERHNQMRELE 482 >gi|284050232|ref|ZP_06380442.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Arthrospira platensis str. Paraca] Length = 504 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 129/509 (25%), Positives = 271/509 (53%), Gaps = 11/509 (2%) Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMII 497 G + G + ++ ++ ++ + G + +++R + ++ W+ Sbjct: 1 GYTPEELIGKKPTDIF----QSQELYQVCMEYSLSILPGISRPIIYQIRKKNGEYIWLET 56 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + ++ G++ + D++++ K+ E + +A D+LTG+PNR + +L L Sbjct: 57 LTKVILDNQGEVRHLQSASRDVSDRIKAEEQLKYDALHDSLTGLPNRTHLMAQLDMALKR 116 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + ++NL+ ++ +D+D +K +ND LG +GD +L + + I ++ D+LA L G+ F Sbjct: 117 AQNNENLQLAILFLDLDNFKVVNDSLGHLIGDKMLSLVAKIIKNFVRDTDLLAHLGGDEF 176 Query: 618 GIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKN 676 I+L + A + +S+ P+ + ERE+ V +SIG + T+ + ++L++ Sbjct: 177 VIVLEYLEVIHEAIRVAERILESLRTSPLQIGEREVFVNSSIGIVARTNRHEKAEDLLRD 236 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LAMY AKH G F + ++ ++ DL A++N+EL L Y PI+ + ++ Sbjct: 237 ADLAMYRAKHEGRGRYAIFDPLMHFHAVQQMHLENDLRKAIKNNELVLYYQPIVNIKTQK 296 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I GLEAL++W HP+ G +S F+ IAE +I I ++L + + + W++Q + Sbjct: 297 IQGLEALVRWQHPERGLLSPGHFIEIAENTGLIIPIGKWLLHKACQQLEEWKNQFPSHCL 356 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ K L L E + +++ + + + + +ES+++ N +++ LL +++ Sbjct: 357 KMSVNLSVKQLE-GFLLEQLDEVLNSYNLNHNSLVMEITESMLVANVQKTCDLLSQIQAK 415 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETT 912 GI L++DDFGT S LSYL +P +++K + S ++ +++ I +SII ++K ++ Sbjct: 416 GIGLSIDDFGTGYSSLSYLHQLPVNSLKIDRSFVSPENLSDRHQVIAKSIIALSKLLKLH 475 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 +IA+ + L ++GC+ Q + Sbjct: 476 VIAEGVETPEQFYWLKKLGCEAAQGYLFS 504 >gi|119470913|ref|ZP_01613497.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7] gi|119445935|gb|EAW27215.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7] Length = 695 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 261/568 (45%), Gaps = 15/568 (2%) Query: 391 LATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 L+ +Q I + E+ D+++ D + + L ++ G Sbjct: 131 LSDVKKAQAIATFKEQMLKTIFEAIPDLLFLMDYNGIIIDYHANNQDALYVSPDQFVGN- 189 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 N L + + F ++ + + +++ + Q + RI + + Sbjct: 190 -NMLDILPKSVAKKFEVYIEKAIEQD-EIVTFKYELSVPQGQVY-FEARINKVLKYD--- 243 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + + I DITEQ +S + I A+ D+LT +PNR LDRL+ + + +D + V Sbjct: 244 -QIMIIIRDITEQHQSEQLIRKQAYFDSLTQLPNRLLALDRLSQLTVEATRNDE-KAAVF 301 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +KKIND LG GD VL+ R+ L+ D + RL G+ F I+ + Sbjct: 302 FLDLDDFKKINDSLGHEAGDKVLIETANRLQRALRKADTIGRLGGDEFIILSKGISTQQN 361 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A + ++ P + RE+ +T SIG A + + + S++L+NA+ AMY AK G Sbjct: 362 AVGIAEKLLQNFREPFTIEGRELMLTISIGVAMFPDNGKSVSDLLRNADTAMYQAKALGR 421 Query: 690 NHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N F + + +E + A++ +E L Y P + EI+G EAL++W +P Sbjct: 422 NTYSFFTNQMNTVIQRRLTIEEQMRGALQRNEFILYYQPQFDVKKNEIIGAEALLRWLNP 481 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLL 806 G+++ EF+ IAE+ +I +I F++E + W++ + I +N++ Sbjct: 482 VLGSVAPDEFIPIAEKTGVIISIGEFVIEESLSLLNRWKNVEQLNRNFSIAVNLSPSQFK 541 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L ++ +S P ++L +E V+M L + +G+ L++DDFGT Sbjct: 542 DLSLFNFIKTSLSNANIEPQSLELEITEGVLMSGESSITDTLNDITNLGVILSMDDFGTG 601 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL PF+ +K + + G T+ +++ + I M+ + ++A+ + + + Sbjct: 602 YSSLSYLRKYPFNVLKIDRGFINGITKNNEDYSLVEATIAMSHGLGLKVVAEGVETKEQL 661 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952 L +GCD Q + + P+ ++ Sbjct: 662 TILKELGCDLAQGYYFSKPIPEQDLIDF 689 Score = 38.8 bits (89), Expect = 4.5, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 3/86 (3%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRL 479 +D R V + G G I R+ ++ Sbjct: 35 YDEQRRVVYWNKGSELLYGYKQEEALGKKLE--ELIVPAPMREMVIEAHTKWINEGVAIP 92 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNS 505 E ++ + ++ N Sbjct: 93 AAEILLKHKNGTDIYVYSSHAMFENE 118 >gi|27379924|ref|NP_771453.1| hypothetical protein blr4813 [Bradyrhizobium japonicum USDA 110] gi|27353077|dbj|BAC50078.1| blr4813 [Bradyrhizobium japonicum USDA 110] Length = 917 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 154/608 (25%), Positives = 274/608 (45%), Gaps = 26/608 (4%) Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 R I+ + I ++ V + + + + + +R AV + Sbjct: 307 WREQIGILISVAASSALAIAGVLIAIVRKLLEQHRLSRERLTLEKQRLDRAVNNMTQGLL 366 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGR 478 +D + V + GL+ + P ++ I H + +F +D +V G Sbjct: 367 LFDAEQRLVVCNQRYIEMYGLSP-EVVKPGSSFHDIIAHRSATGSFTGDVDGYVARVLGD 425 Query: 479 LQYEFRVR--AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + + AD + ++ ++G ++ DITE+++ E I A D Sbjct: 426 IHARNSMVVDTADGRSIHILNE----PLADG---GWVATHEDITERRRIEERITHLAHYD 478 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LT +PNR F + L L +A D V IDID++K +ND LG VGD++L S+ Sbjct: 479 ALTDLPNRAMFHEHLRQEL--AAITDGEAIAVHYIDIDEFKGVNDALGHLVGDELLKSVA 536 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 + D +ARL G+ F I+ + + ++ D + ++I P + + +T A Sbjct: 537 TSLSRCAGPADFVARLGGDEFAIVQGAVTSPDQVNDLVARVFQAIRAPFDCMGHHLTTDA 596 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLA 714 SIG A ++LKNA+LAMY AK G F +R ++ DL A Sbjct: 597 SIGIALAPGHGTVLDQILKNADLAMYAAKSAGRRTYRFFEPEMDAKVRERRQLEIDLRHA 656 Query: 715 VENSELY----LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 + L + Y P + L D+ I G EAL++W HP+ G +S +EF+ IAE+ +I I Sbjct: 657 IAQGGLEGGLEVYYQPCLGLKDDRITGCEALVRWRHPERGMVSPAEFIPIAEDTGLINEI 716 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L RD SW D I + +N++ L + A ++ + + SR++L Sbjct: 717 GEWVLATACRDAASWPD-----DIRLAVNVSPVQFKSGTLALKIMAALAASNFPASRLEL 771 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +E+V++ + + + +L +LR IG+ + LDDFGT S LSYL PFD +K + + Sbjct: 772 EITEAVLIRDDDTALAILHQLRAIGVRIALDDFGTGYSSLSYLHRFPFDKIKIDRCFVND 831 Query: 891 ST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + +I+++++ +A T A+ + E + L +GC +Q ++ + Sbjct: 832 IAGPDGSASIVQAVVNLAAARRMTTTAEGVETEEQQRLLRTLGCSEMQGYLFSAAKPADK 891 Query: 949 ILKLLKER 956 +L+L Sbjct: 892 VLELFALH 899 >gi|163939565|ref|YP_001644449.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] gi|163861762|gb|ABY42821.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] Length = 911 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 157/760 (20%), Positives = 299/760 (39%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ + + ++ + + G + ++ Sbjct: 162 ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLAITD 217 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY---------PMVTASIARITLASI 318 +L+ YL + + + + + + ++ + + L Sbjct: 218 YLYFYLQDDLSDCSLILLRCLYRVFLLFIAIAASISKNASSRRNYFIIDPTFGKKLLVIF 277 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 278 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNSD------LTEMLKVF 331 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + V Q S + + ER D + + + + +L Sbjct: 332 NNQLEQKVSQRTEDLIKKSNDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 391 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G SG + G DR L LQ + + W + Sbjct: 392 GKNSGELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 448 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT KK + I AF D +T I NR F L ++ + Sbjct: 449 IVPIM-IEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQKELEKSIERA 507 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ ID++++K IND G ++GD VL + +R L LAR+ G+ F Sbjct: 508 RKTQG-EFGLLYIDLNRFKTINDTRGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 566 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ + ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 567 IIVHNHT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 625 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + ++ Sbjct: 626 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPKALENNELFLLYQPQVDSKTGMVI 685 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I I + L+ R + W + + Sbjct: 686 GAEALIRWQHPELGLISPFEFIPIAEETSQIIPIGKWTLQEACRQLKKWHSA-GYANLKM 744 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 745 GINLSAIEFEQKDFVQAIISTIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 804 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+ +II +A + +I Sbjct: 805 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGNSTDGNEIIHTIISLAHTLNMKVI 864 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + +K L Sbjct: 865 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLS 904 >gi|192360825|ref|YP_001981342.1| Diguanylate cyclase/phosphodiesterase [Cellvibrio japonicus Ueda107] gi|190686990|gb|ACE84668.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Cellvibrio japonicus Ueda107] Length = 940 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 136/575 (23%), Positives = 246/575 (42%), Gaps = 14/575 (2%) Query: 392 ATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + R L + + + D + + I G + G Sbjct: 357 RLAALAIETTRAENRLQLTACVFSHAREGILITDAQGNIIEVNTTFTDITGYTRDDVIGK 416 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L + +D F + S V G E + + + + I + +S G Sbjct: 417 NPRLLQS-NKHDAVFFERLWHSLVNE--GAWCGEIWNKRKNGDLYVASMTISAVKDSRGQ 473 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I ++ + NDIT K+ + A D LT +PNR DR+ L S L V Sbjct: 474 ITHFVDLFNDITHIKEHQRQLEHIAHYDALTHLPNRVLLADRMKQALLHSQRS-GLSLAV 532 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 M ID+D +K IND G +GD +LV+++ R +L+ D LAR+ G+ F ++L Sbjct: 533 MYIDLDGFKAINDQYGHDLGDQLLVAISSRFKSVLRESDTLARIGGDEFVVVLNELEQPA 592 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + + A P+ L ++ + +TASIG + S + +++++A+ AMY AK RG Sbjct: 593 AYQPVLDRLLATAADPLILRDQALRITASIGITLYPSDTADAEQLIRHADQAMYLAKQRG 652 Query: 689 GNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N F V + + + + LA+E E L Y P + + +VG EALI+W H Sbjct: 653 KNGWHLFDVDRDVATKHQYESLERIRLALEQREFILHYQPKVNMKTGALVGAEALIRWQH 712 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P G IS EF+ + EE + + ++++ I W+ + + + +N+ + L Sbjct: 713 PTRGMISPGEFLPLIEEHPIGLDVGEWVIDTALSQIEHWQREG--LALPVSVNLCALQLQ 770 Query: 807 DNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + L+ +P +++L E+ + + + +G+ +DDFGT Sbjct: 771 QGRFAQRLSELLQAHPDVAPGQLELEIVETSALADMTDVANTMRACNALGVRFAVDDFGT 830 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL +P +T+K + S + AI++ +I +A+ +IA+ + Sbjct: 831 GYSSLTYLKRLPAETLKIDQSFIRDMLDDPDDFAIVKGVISLAQAFHRQVIAEGVESVAH 890 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + L +GC+ Q +A P+ I ++ P Sbjct: 891 GEMLIPLGCELAQGYGIARPMLAGEISSWIQRWTP 925 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 5/225 (2%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + T++L D+ L + T +Q +A ++ R Sbjct: 27 SLFAPPLTETQQLKRDVQIYQLALEMQREEWRQAQTQLQTTIAQQRVAEEQLRTSARLLE 86 Query: 410 AVLG-SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 A + + + R+ + + I + L + + R + L Sbjct: 87 ASQAIANVGSVEMEFPSRRLYWSAETYRIHDTSPEEYTPTFDLSLDHYLPDSRQKLQAAL 146 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + E + + + G ++R GI DI+ +K++ Sbjct: 147 QKALET-GEVFDLELEKYTFKGRKIDVRTTCTATFDQLGRLIRLTGIFQDISARKQAERY 205 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTT-ILDLSATDDNLRPTVMVID 572 L ++ L + L LD+ T+ ++ T++++D Sbjct: 206 QLHHSHILEL--LLQHAPLQQVLEAIALDVERTNPHMLCTILLLD 248 >gi|330969228|gb|EGH69294.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 705 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 139/583 (23%), Positives = 260/583 (44%), Gaps = 12/583 (2%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434 +L + G + H L Q D ER + S D ++ + + Sbjct: 122 LLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + + L + + D + + E ++R Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + I + G+ +GI DIT +K+S + +L A D LTG+PNR F L Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + +A + + ++ID +K IN+ G +GD+VL+ ++RR+ L D L R+ G Sbjct: 297 MTQAAIS-RWKLAALTVNIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 355 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +IL+ +R ++ P + + + +TASIG A + S E++ Sbjct: 356 DQFALILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIGIALYPEDGEDSRELI 415 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A AM A+ G ++ + R+ ++ L AV N +VY P + L + Sbjct: 416 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 475 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + I GLEAL++W P +S + F+ + E L +I + ++++ + I W+ Sbjct: 476 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + +NI+ + + + L ++ + K +P +++ +ES +M N + LG LR Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTAHTIATLGALR 594 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +S+++DDFGT S L+YL P D +K + + + S + AI R+II +A +++ Sbjct: 595 ANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +IA+ + + L CD IQ ++ PL + L Sbjct: 655 LQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFL 697 >gi|269963029|ref|ZP_06177366.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832272|gb|EEZ86394.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 1004 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 140/581 (24%), Positives = 277/581 (47%), Gaps = 14/581 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 + +L F +L T Q ++ + S D +WDWD+ +++ + Sbjct: 423 LDMLSLFIERDALLNTSTLRQKNSQQLLQQLKVVSNSSNDGIWDWDLTSNKLRWNSRLVN 482 Query: 437 ILGLA--SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG S + +IH D D + + + + + EFR+R DN + W Sbjct: 483 MLGNENISHKRYINCDQLFQFIHPEDIDQLEEHIQAHLVDKVA-FKTEFRIRKHDNSYIW 541 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + N+ G +R+IG D+TEQ++S I A+ D LTG+ NR+ ++ + Sbjct: 542 VQANGSAVRNAQGHAVRFIGSMTDVTEQRESAAKIHHMAYFDALTGVANRRKIMEEI--- 598 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 ++ + + +M++D++++K IND G VGD +L +T+ + +L P +ARL G Sbjct: 599 VEHIRVNPDKPRAIMLMDLNRFKMINDSFGHHVGDALLCHITKELESVLVEPHTIARLGG 658 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F + +N+ + A + ++I P+ E E+ S+G + + S + E++ Sbjct: 659 DEF-LFFCHVSNAAQANQIASMILRTIEKPMIHEEMELVSQGSLGISFYPSDGHSPEELV 717 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMD 732 K A++AMY AK GG V + + + + +I + L A+E SE+ + Y P + Sbjct: 718 KKADIAMYQAKQLGGRKVVHYNDTMEATTQSLIKFEHHLNRALEQSEIDVFYQPQLCHKT 777 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + ++ +EAL +W G + S+F+ +AE MI + ++L R+ RD+ + Sbjct: 778 QRVIAVEALARWQSEALGFVPPSQFIQVAENAGMISRLGEYILNRVCRDVQ--QSAWLQS 835 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I +NI+++ L+ + + I S + +E+ + + + L +LR Sbjct: 836 MSHISVNISARQLVQPYFADEVIQTILNYRLPLSLFCIEITETAAISDYDLCVKSLEKLR 895 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 K GI+++LDDFGT S LS L +P VK + S + + + + ++I M +++ Sbjct: 896 KAGITISLDDFGTGFSSLSLLKKLPLSEVKIDRSFIADIIKDQSNLDFVSTMILMGRSLG 955 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++A+ + + L+ +G D +Q + + P + + + Sbjct: 956 YRVVAEGVETAEHVSSLSELGVDLLQGYYFSKPQPISQLEQ 996 >gi|163853267|ref|YP_001641310.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163664872|gb|ABY32239.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 700 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 142/575 (24%), Positives = 258/575 (44%), Gaps = 23/575 (4%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-- 449 A + R A+ + +D + V I GL ++H + Sbjct: 124 ALVEAHAELSEQNRRFDAALENMTHGLCMFDAEQRLVVWNRRYLGIFGLPDDAVHVGMGQ 183 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNS 505 R + + +D+ R L + AD + +I R PM++ Sbjct: 184 RAIIEMLVARGCYKRGATVDAISEGTRTSLSGDGSKSVLRELADGRVIAVIHR--PMADG 241 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G ++ DITE++++ I+ A D LT +PNR + L T Sbjct: 242 GG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAP 297 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND G AVGD +L ++ R+ ++ D++ARL G+ F +L Sbjct: 298 LAVLCLDLDRFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFA-VLSRVE 356 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHA 684 ++ A A + +++A P L + + S G A +LK A+LA+Y A Sbjct: 357 DAAAAATLAERLIETVAAPYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEA 416 Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G V F +R+ ++ +L A+ L Y P++ L D I G+EALI Sbjct: 417 KTEGRGTVRLFEPQMDETLRERLGLERELREALAQDRFELHYQPLVDLSDNRITGMEALI 476 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G +S + F+ +AEE +I I ++L + RD + W + I + +N++ Sbjct: 477 RWHHPERGLVSPAVFIPLAEETGLIVPIGEWVLRQACRDAVDWPGE-----ISVAVNVSP 531 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + + ++ + SR++L +E+V++ + E + L LRK+G+ +++DD Sbjct: 532 LQLRHRGFIQSVLGALAASGLKASRLELEITENVLLDDTEANLETLHTLRKLGVRISMDD 591 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920 FGT S +SYL PFD +K + S + + AI+R+I+ + ++ T + + + Sbjct: 592 FGTGYSSISYLRRFPFDKIKIDRSFVRDCAAESEAGAIIRAIVSLGASLGITTLVEGVET 651 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E + + G +Q + P + I LL+ Sbjct: 652 EPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 686 Score = 80.8 bits (198), Expect = 1e-12, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 19/159 (11%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E +A D +W D +P +LG + + G R+ L Sbjct: 3 LNDLEELARIAF----DWLWATDAEDRFSYVSPGAERVLGRSPAELIGLTRSALVC---E 55 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + RR + R D W I RP + GD L Y G+ +D+ Sbjct: 56 GEGESLAVYRETITARRPFRDLTYVYRHPDGTPRWFEISGRPHFSPEGDFLGYHGVGSDV 115 Query: 520 TEQKK----SLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 TEQ + +E + Q NR+ F L + Sbjct: 116 TEQHRTRCALVEAHAELSEQ-------NRR-FDAALENM 146 >gi|192360118|ref|YP_001983809.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] gi|190686283|gb|ACE83961.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] Length = 805 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 165/804 (20%), Positives = 321/804 (39%), Gaps = 42/804 (5%) Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248 ++ + + LL I+ + R + + L I+ + + Sbjct: 6 QYWQAFLRRLDQLLQIYTLDETVGGRFRSEQISAIIRLTPLTVIANLINVSMIVYSYRDS 65 Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHW------NRWHAKVGYITFSGIACIAILFCMSFY 302 + L + + +L N+ + + + L+ + Sbjct: 66 AIHPLLVVWGCLLLGLIFLGARPWLILIRGHWRNQVSERSLRRAVTHAGLLGFLWGIVPL 125 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362 + ++ A + S+V + +A +L + I L+ + +R Sbjct: 126 ICAIHSNAANTLIISVVCVGMLCAGGFALATVPKAAILFCLLVGIGSELSLLFNPLLQRW 185 Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 D ++ ++ VI T ++A +Q + D +W+ D Sbjct: 186 DLALLLLVYCSTVIAAVITSARTFGARLMAEAEAAQQQQLVSLLLHDFETHASDWLWELD 245 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQ 480 +P +A++LG + +H L +H D ++L + + Sbjct: 246 ANGQLRDPSPRLASLLGRSLEELHEIPFTTLFQMHPEDGLGGEALSLLRERLRQGQAFRH 305 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 V+A + + W + +P+ + G ++ + G+ +D+TEQ+ + + A D LTG Sbjct: 306 LVVPVQAHN-KACWWQLSAKPLLDRRGHLIGWRGVGSDVTEQRNAHREMNRLANFDALTG 364 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 + NR F +RL S ++ ++ +D+D +K +ND LG VGD VL ++ +R+ Sbjct: 365 LANRYQFNNRLQQA-KTSLRAEDKLFALLFLDLDNFKTVNDSLGHGVGDKVLQAVAKRLQ 423 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 + ++ D+LARL G+ F +I E+ + A + + P + + + SIG Sbjct: 424 KAIRKDDLLARLGGDEFALISWGEDAVSQAGQIAQRLLRCFHEPCQIDGLNLQIGCSIGI 483 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN- 717 +LKNA++A+Y AK G N + + R+ + D+ A+E+ Sbjct: 484 VLAPEHADQPETLLKNADMALYAAKSAGRNTFQFYERGMGDSAQRRLNLLNDMRRALESV 543 Query: 718 ----------------------SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 E L Y P I L D I G E L +W HP+ G I Sbjct: 544 PCIKPLCTYVDPHFRWQDQPLLPEFELHYQPQISLADGRITGFEVLTRWHHPERGTIPPV 603 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AEE MI + +++L R W + +NI++ L ++ Sbjct: 604 EFIPLAEESNMIIPLGIWVLVEACRTASHWPA-----GWRLAVNISASQFSHGSLVPVVK 658 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + + +P+R++L +ES+++ + +R +LG LR +G+ + LDDFGT L+YL Sbjct: 659 RALQLSGLAPTRLELEITESLLIQDAHSTRQILGELRTLGVRVALDDFGTGYCSLAYLRS 718 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + S +T AI+ II +A ++ +A+ I + L GC Sbjct: 719 FPLDQLKIDRSFVTALQQDASARAIVSGIIQLANALDLETVAEGIESPQEAAMLRDTGCR 778 Query: 934 YIQDSHVASPLGFNSILKLLKERF 957 Q A+P+ +++ + + Sbjct: 779 LGQGYLYAAPVPGHALDEFCRRYQ 802 >gi|229116983|ref|ZP_04246366.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] gi|228666511|gb|EEL21970.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] Length = 800 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 162/759 (21%), Positives = 311/759 (40%), Gaps = 30/759 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 53 ILFLSIGDVFLSFIFPILDLLLLLLGVTLIFRPAIFNTKSK----LFIFILVLTGLAITD 108 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V + + + + Y ++ + + L Sbjct: 109 YLYFYLQDDLSDRSVILLRCLYRVFLLFIAIAATIPKNASSKRNYFIINPTFGKKILVIF 168 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 169 PYLAVTVLIGFTLKEQTSSSTLIMGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 222 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q + S + + ER D + D + + +L Sbjct: 223 NNQLEQTVSQRTMDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQAGSMLL 282 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G D+ + + LQ + + W + Sbjct: 283 GKDSAVLIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 339 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ + I AF D +T I NR F L + + Sbjct: 340 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELEKSIKRA 398 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + R L LAR+ G+ F Sbjct: 399 QKTQD-KLGLLYIDLNRFKTINDTLGHSIGDRVLKEVANRFRTCLSPTIPLARIGGDEFA 457 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + + + ++ SIG A + I ++ +L++A+ Sbjct: 458 IIIHNQT-EQQLLDLCETLFRITEESFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 516 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 517 IAMYSAKEKGNNAVCMYDETLSRKITRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 576 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 577 GSEALLRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQKACRQLKEWHSA-GYSNLKM 635 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + S I L +E + M + + + L L+ G+ Sbjct: 636 GINLSAIEFEQKDFVQIIISTIEEIGVPASSIDLELTERIAMVDEKETLSKLKALKSYGV 695 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 696 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIETSTDGDEIIQTIISLAHTLNMKVI 755 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+ + + + L + C IQ + + P+ + L L Sbjct: 756 AEGVETKGQLTVLQQNACYLIQGYYYSKPVNEDEFLMFL 794 >gi|144898172|emb|CAM75036.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Magnetospirillum gryphiswaldense MSR-1] Length = 840 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 141/615 (22%), Positives = 274/615 (44%), Gaps = 18/615 (2%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW- 421 + + + + + + + + +R +V+ Sbjct: 226 GDQFPLELTTSEVRMEGHRLFVGIGRDITQRKATENALLESEQRLRAIAGNMPGMVFQRV 285 Query: 422 ---DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 D + T LG+ + +L + +++ F L Sbjct: 286 LGPDGTMRFTYVSEGCRTFLGVEPEELLEDPELFLQCMTADEQKLFLAALARSAET-LEP 344 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 L E V A + W+ + RP NG ++ + G+ D+TE+K + + + A+ D L Sbjct: 345 LDEEMAVFGAGRRRRWLRGQSRPNRRPNGSVV-WDGVMLDVTERKTAEQRLSFLAYYDPL 403 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 T +PNR +FL+R + +A L V+ + ID++ IN +G +VGD VL + Sbjct: 404 TRLPNRTAFLERFAGARENAARSHQL-LAVLSLGIDRFGIINATMGHSVGDQVLTASADI 462 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + L DI+AR SG+RF ++L + ++ + + +++ E V+ S+ Sbjct: 463 VQSGLSRNDIMARASGDRFLVLLSGHTSRRELTEMVERIHGLAQSAVHVAGDEFEVSTSV 522 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVE 716 G A + + ++KNAE A+ AK +G ++ F + + ++ L +E Sbjct: 523 GVALFPRDGEDAETLIKNAEAALQRAKSQGPATLQFFTKEMSSRAAKTLSLQNKLRRGLE 582 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 + E Y P + L+ IVG+EAL++W++P+ G +S EF+ +AEE +I I ML Sbjct: 583 HGEFVPYYQPQVDLVTGAIVGMEALVRWNNPELGMVSPGEFIPVAEESGLIDGICESMLA 642 Query: 777 RIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALISKTLYSPSRIKLSFSES 835 + AR W+D PI + +N++ + L ++ + ++ P +++ +ES Sbjct: 643 QCARQNKQWQDSGFR-PIPVAVNVSGRQFQYARRLITALETSLGESGLDPRYLEIELTES 701 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STE 893 M + + + ++ L+ +GIS ++DDFGT S LS L P +K + S + + Sbjct: 702 SAMRDADSAIAVVQTLKDMGISCSIDDFGTGYSSLSVLKRFPITKLKIDRSFVMDVITDP 761 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+ +I+ MAK ++ ++A+ + + L +GCD +Q + PL + ++L Sbjct: 762 NDAAIVDAIVAMAKALKMKVVAEGVEHTQHLDFLRALGCDQMQGYLFSRPLPATEMGQML 821 Query: 954 KE----RF-PLVKNT 963 + F P +N+ Sbjct: 822 ADGKCLHFGPAPRNS 836 Score = 56.9 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 3/107 (2%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + ++ ILG A M L IH DRD + R EFR Sbjct: 53 WFSDNVTKILGFAPKDMGVNSNGCLHVIHWADRDRHLDAIRHSAASMRPC-DEEFRAITQ 111 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 Q W+ P NG ++ + G+ D+T+ +++ + Sbjct: 112 SGQVRWLRGASTP-RLENGQVV-WDGVLIDVTDGRRAEFRLDMLMEH 156 >gi|121594721|ref|YP_986617.1| diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] gi|120606801|gb|ABM42541.1| diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] Length = 756 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 130/617 (21%), Positives = 253/617 (41%), Gaps = 50/617 (8%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +I + + + + + + + R ILG Sbjct: 145 SIWIIDDIDEQKRAQAQLQAALWEKQVLFDSAMVGIVFLQ-ERRMTRCNRHFEQILGYGP 203 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + G + + V + + + +R D + +R + + Sbjct: 204 GELAGSSSRRWYLSDEDWHEAGVRCYAPLVQGQA--FEGQMVLRTRDGRAIECEVRSKAV 261 Query: 503 SNSNGDILRYIGIANDITEQ---------------------------------------K 523 + + I I D++E+ + Sbjct: 262 -DPSNVAQGSIWIVMDVSERLRIQRQLAGMHGELEQQVRDRTRELQETVGNLHREIQDRQ 320 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + E I A D LT +PNR +R + + VM +D+D +K +ND L Sbjct: 321 RDQERIYWMAHYDALTELPNRVLLAERGQDAIRQAQES-GAPLAVMFLDLDNFKHVNDSL 379 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G +GD +LV + +R+ ++ D +ARL G+ F ++L N+ A A M+++ Sbjct: 380 GHRIGDALLVEIAQRLRTTVRQRDTVARLGGDEFVLLLPG-ANAQGAARVAAKMQEAALQ 438 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702 P+++ E+++ S+G A + ++++A+ AMY AK G N F + Sbjct: 439 PVHIQHHELSLALSMGIALFPEHGSDFETLIQSADTAMYRAKADGRNSFRFFTPTMQAQS 498 Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + + L A+E ++L L Y P + + + G+EAL++W HP+ G +S +EF+ +A Sbjct: 499 ARALQLTNALRRALERNQLSLHYQPQVSIATGRVCGVEALLRWHHPELGAVSPAEFIPVA 558 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ I I ++L + +W Q P + + +N+++ +L E + L+++ Sbjct: 559 EDTGQILPIGEWVLRTALAQLRTWHSQGL-PALTMAVNLSAVQFRQPQLLELVDRLLAEY 617 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P ++L +E+V + +P + + +L G+ L++DDFGT S LS+L + Sbjct: 618 GVQPHLLELELTENVAVADPHAAIATMDQLHAKGVRLSMDDFGTGYSSLSHLKRFQIYRL 677 Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + AI+ +II MA+ + A+ + + L GCD Q + Sbjct: 678 KIDQSFVRDLDHDGNDRAIVSAIIRMAQALGMRTTAEGVETAHQLTFLREQGCDEAQGFY 737 Query: 940 VASPLGFNSILKLLKER 956 + PLG + + L +R Sbjct: 738 FSRPLGAPHLQQYLLQR 754 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 16/148 (10%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIH 457 + Q + +G + R V A I GL G +H Sbjct: 35 AMQRVLREQQTLLDSAGVGIVFIR-NRALVRCNQRCAEIFGLPSPEDAIGRSS---EALH 90 Query: 458 IND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + R+ R + + + E +++ D Q W + R ++ + I Sbjct: 91 PSRGAFRELGRAAYPTLARGQA--YRTERQLKRCDGQLFWAHLTGRLINPRDSR-EGSIW 147 Query: 515 IANDITEQKKSLEG-----ILCNAFQDN 537 I +DI EQK++ D+ Sbjct: 148 IIDDIDEQKRAQAQLQAALWEKQVLFDS 175 >gi|186681944|ref|YP_001865140.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nostoc punctiforme PCC 73102] gi|186464396|gb|ACC80197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Nostoc punctiforme PCC 73102] Length = 664 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 145/598 (24%), Positives = 279/598 (46%), Gaps = 43/598 (7%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + +R + D +IV AT+LG+ + G I Sbjct: 63 RAEVEKERQRYQDLFEFAPDAYLVTNIVGTIQEANHAAATLLGVNQKYLVGKPLILF--I 120 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYE----------------FRVRAADNQFHWMIIRIR 500 DR F + +++F L + ++++ + W++ I Sbjct: 121 AQQDRQFFCSQMNNFQELLNWELNLQPRGGKPFPAMIKASAAYKLQGKQVGWRWLLCNIS 180 Query: 501 -------PMSNSNGDILRYIG------------IANDITEQKKSLEGILCNAFQDNLTGI 541 + + ++ + + +ITE+K++ +L AF D LTG+ Sbjct: 181 ERKKTEEMLHQAYDELEIRVAERTAELVKANQKLLTEITERKRAESQLLHLAFYDILTGL 240 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 NR +F++RL+ ++ S N V+ ID+D++K IND LG GD +L++ R+ Sbjct: 241 ANRAAFMNRLSHAINYSKRHSNYLFAVLFIDLDRFKVINDSLGHLNGDQLLLATASRLQV 300 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 ++ D ARL G+ F I+L + + A +++ +A+P L +E+ +TASIG A Sbjct: 301 CVRSIDTAARLGGDEFTILLEGIQDVSDVITVAERIQQELALPFELEGQEVFITASIGIA 360 Query: 662 SWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718 ++ E+L++A+ AMY AK +G + F + + ++ ++ DL A+E Sbjct: 361 LSSTLDYKHPEEVLRDADTAMYQAKVQGRARYKLFNSDMYANALAKLQLETDLRRAIERL 420 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 E + Y PI+ L I+G EAL++W HP+ G ++ ++F+ +AEE +I +I ++L Sbjct: 421 EFRVYYQPIVSLTKGSILGFEALLRWQHPERGLLNPADFISLAEETGLIFSIGKWVLHEA 480 Query: 779 ARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R + +WR + + I +N++ K +L E + ++ T + L +ESV+ Sbjct: 481 CRQMQAWRMCHDSNLLEKISVNLSLKQFSQPDLIEQIGQILHSTGLDADTLTLEITESVI 540 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI- 896 + N ++ +LR++GI L++DDFGT S LS L P +K + S ++ + + Sbjct: 541 VANGDKVTATFLQLREMGIKLSIDDFGTGYSSLSRLYNFPISVLKIDRSFISLMSANKKN 600 Query: 897 -AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I+ I +A + ++A+ + + + L ++ C+Y Q + PL + L+ Sbjct: 601 LEIIEIIATLAHKLGVDVLAEGVETKEQLAFLRKLKCEYGQGHFFSVPLNSSEAEALI 658 >gi|163851650|ref|YP_001639693.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163663255|gb|ABY30622.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 803 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 150/658 (22%), Positives = 267/658 (40%), Gaps = 39/658 (5%) Query: 310 IARITLASIVLYYTYFIIYHGMKGYE--RAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 I + + + + + L + + + D Sbjct: 177 IVALNQGAAAILGRPVASLQWQRLGDLVPVRLGVTHRLSGVLGCADRATFELAVPRADRT 236 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-D 426 L I L+ + I + + +W D Sbjct: 237 TLHLKVEAQAIGDLVAVAMTD--------VGDIKAREASFRFLFESNPLPMWLVDQDSAR 288 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 V G + + D+ R R R Sbjct: 289 FVAVNEAAVAHYGYSREAFLARGL--------QDQSEAVA-FSFARDGRL------HRHR 333 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 AD + + R ++ G +G A D+TEQ+++ I A D LTG+PNR Sbjct: 334 RADGSLIDVTLFERSLAFE-GRPA-VLGAAIDVTEQRRAEARITHMAHHDALTGLPNRAL 391 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F RL + A ++ +D+DK+K +ND LG GD +L ++ RI L Sbjct: 392 FTTRLAEAITEHART-GAGAALLCLDLDKFKLVNDTLGHPAGDTLLRAVADRITACLHGE 450 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D++ARL G+ F ++L ++ ++ A + ++++ P+ L +RE + S+G A Sbjct: 451 DLVARLGGDEFAVLLR-TPDAGTVSAVAGRIIEALSHPVRLGDRECQIGVSVGIACLPEH 509 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVY 724 S +L++A+LA+Y AK GG+ F + DR + DL A +L L Y Sbjct: 510 GTDSDTLLRHADLALYRAKADGGSIAHCFEAAMDSWDRSRRRREADLHEAFARGDLALAY 569 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P++ + IVG EAL++W HP G I SEF+ +AEE +I I ++L + + Sbjct: 570 QPVVGVRSRAIVGFEALLRWHHPVEGAIPPSEFVPLAEETGLIVPIGAWVLRQACAEASL 629 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W D P+ I +N++ D L ++ ++ + +P R++L +ESV++ E + Sbjct: 630 WAD-----PVRIAVNLSPVQFRDPGLVATVREALAFSGLAPHRLELEVTESVLLAASEAN 684 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSI 902 L LR +G+ + +DDFGT LSYL PFD +K + S ++ G AI++++ Sbjct: 685 VATLHALRDLGVRIAMDDFGTGYCSLSYLQKFPFDKIKIDRSFVSRLGEDPHSTAIVQAV 744 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 I + ++ +A+ + E+ L GC+ +Q P+ + ++ + Sbjct: 745 IGLGASLGIVTVAEGVETEVQFAHLRAEGCEEVQGYLFGRPIPAPQAVAPIRREPDVA 802 >gi|78486527|ref|YP_392452.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] gi|78364813|gb|ABB42778.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thiomicrospira crunogena XCL-2] Length = 963 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 142/562 (25%), Positives = 274/562 (48%), Gaps = 13/562 (2%) Query: 401 FSDGERQSL----AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + ER + +G+ + DI V I G + + G + L Sbjct: 403 RQESERFQMLTRSVFDNAGEGILVTDIHNRFVVVNKKFEEITGYSQEEVLGKNPSILSSG 462 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + F + + + Q E R D + + I + + G +L Y+G+ Sbjct: 463 QQS--TLFYQAMWQELSEK-DTWQGEIWNRKKDGTMYPEWLTINAVKDKQGRLLHYVGLM 519 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 ND+++QK + + I +F D LTG+PN F +RL + +S + + ++++DI ++ Sbjct: 520 NDLSQQKATEQEITRLSFYDILTGLPNISLFKNRLQQSIQMSV-HEANQVALLIVDIARF 578 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND +G GD +L + +R+ +LL D +ARL + F I++ S N ++ FA Sbjct: 579 KMINDAIGYEHGDQLLKGVAQRLTQLLDAEDSVARLGADNFLILMESFQNKQDVSHFAEE 638 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVES 694 + + ++P + E + IG A + T+ +++K+A+ A++ AK G S Sbjct: 639 IMNAFSLPFEVEGHEHVLDIKIGVALSSIDGDTALDLMKSADEALFEAKKLPHSGYVYHS 698 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 +++ S+ ++ L A++N EL Y P I L ++VG EAL++W HP+ G IS Sbjct: 699 SELAATTSEYFFYEKALRQAIDNQELVAYYQPQIVLETNQVVGAEALVRWIHPEMGVISP 758 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 ++F+ IAE +I + +L + + ++W+ Q I +N+++ L+ + + + Sbjct: 759 AKFIGIAESTGLIIPLGREILLQACQQWLAWQQQGLTLE-RISVNVSTVQLMHSGFVQSV 817 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ +T P ++L +ES ++ N + +L L+ +G+SL++DDFGT S LSYL Sbjct: 818 AQVLEETGLDPKHLELEVTESFLLQNEQEGIAVLHALKALGLSLSMDDFGTGFSSLSYLK 877 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + ++ +AI+ +II + + +IA+ + E ++ L + GC Sbjct: 878 KLPLDQLKIDQSFIRSLPHDKEDLAIVDAIIAVGLAVGVEVIAEGVETEAQMEYLHKKGC 937 Query: 933 DYIQDSHVASPLGFNSILKLLK 954 Q + P+ L+ + Sbjct: 938 QLGQGYGFSRPIQQQEFLQWCQ 959 >gi|104781427|ref|YP_607925.1| sensory box protein [Pseudomonas entomophila L48] gi|95110414|emb|CAK15122.1| putative sensory box protein [Pseudomonas entomophila L48] Length = 703 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 146/568 (25%), Positives = 248/568 (43%), Gaps = 16/568 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGS 444 ++Q +SQ + + + V D+ ++ + G S Sbjct: 132 LLQAKELAEQYSQEMTKLSQFLDSVITHIPASVIVQDLHSQQILLANQQAEQLFGGQGAS 191 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G + + D L +G E RV A + R N Sbjct: 192 LVGKLPG--ECMAPTAADYLEQHLARGARSAKG-FAAETRVDTARG-PRTLRSRAMLCRN 247 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G + +A D TE+ + I A D LTG+PNR F +RL L D L Sbjct: 248 -QGQGDYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLKQALLRGEDDGKL 306 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + +D+D +K IND G A GD +L +L +R+ L+ D LARL G+ F ++L Sbjct: 307 TAALC-LDLDNFKNINDTQGHAFGDKLLRALGKRLRRELREHDTLARLGGDEFAVVLSGL 365 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ + A + ++I P + + +V SIG A+ + ++L A++A+Y A Sbjct: 366 DSREAASSTAQRLIEAICPPFQIEGHQFSVGVSIGVATAPDDHDQAEQLLGYADMALYEA 425 Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N E F V R +++ DL A+ +L L Y P++ + G EAL+ Sbjct: 426 KRNGRNRFECFHVELDVAARQRRLVETDLRTALHLGQLELHYQPVVDQQSNSVTGYEALL 485 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP G I +F+ IAEE +I I L ++ SW + + +N+++ Sbjct: 486 RWQHPARGMIMPMDFIPIAEETGLIHEIGARALNLACQEAASWGTEQ-----TVSVNLSA 540 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L + ++ + +R++L +ESV++GN E + L L+ +G+S++LDD Sbjct: 541 VQFKNAGLVHSVALALADSGLPATRLELEITESVLLGNSEENVRTLRALKDLGVSISLDD 600 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920 FGT S L YL PFD +K + S + E R A I+R+I ++ ++ A+ + Sbjct: 601 FGTGYSSLGYLRSFPFDRIKIDKSFVHDMCESREAMSIVRAITELSNSLMIKTTAEGVES 660 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948 ++ L GC + Q P + Sbjct: 661 AEQMQRLMAEGCSHFQGYLYGRPAPASE 688 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 3/126 (2%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 L + D ++ P G + + G + ++R Sbjct: 11 YRLLIQSVVDYAIYLLTPEGIVANWNPGAQRAKGYQAEEIVGQHYSLFYT--EDERAAGL 68 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + GR + + D + I + + G ++ + I DI+E+++ Sbjct: 69 PAKNLEQARSTGRFEEQGWRLRKDGSAFHAHVLIEAVRDEQGHLIGFAKITRDISERRRH 128 Query: 526 LEGILC 531 + +L Sbjct: 129 EQELLQ 134 >gi|257094361|ref|YP_003168002.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046885|gb|ACV36073.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 714 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 147/591 (24%), Positives = 279/591 (47%), Gaps = 22/591 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L+ +++ + +G Q + +R + A + W+W + R + ++ + G Sbjct: 115 LLLTQRVRYGMRSGQAIQAVQHSQQRLAHAQRLARMGSWEWSVAEARFACSDEMLRLFG- 173 Query: 441 ASGSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G + +L + +DR + + + Q + ++ D + + + Sbjct: 174 GDWQLAGAATLDGFLASVRESDRALVASARRALLI-DGQPYQITYGMQRPDGKLREVYEQ 232 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + ++ G I+R GI DI+E+ ++ + I + D LTG+ NRQ F L+ + Sbjct: 233 AQAVRDTAGRIVRVEGITQDISERIEAQQRIEHLSMHDGLTGLANRQLFAQVAAVELERA 292 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD----------- 607 + ++ +DID +K +ND LG A GD VL +L R+ ++ D Sbjct: 293 RRNHG-SCAIVHLDIDHFKSVNDALGNAAGDQVLCTLAERLRSSVRGADLLALNPSMRAA 351 Query: 608 -ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 +AR+ G+ F ++++ + A A + ++IA P+++ +RE+ +TASIG A + Sbjct: 352 ETVARIDGDAFTVLVLEVRAAGDAAIIAERLLQTIARPLSIDDREVVLTASIGIAVFPRD 411 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVY 724 + + + AE A+Y A+ G F ++ ++ +L A+ EL L + Sbjct: 412 ADSVEALARAAEQALYAARASGPATYRFFDEEMNAAARVKLHLENELRRAIAQDELRLHF 471 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P + + G EAL++W HP+ G + EF+ +AEE +I A+ ++L AR + Sbjct: 472 QPKVDAASGRLSGAEALVRWQHPRRGLLGPGEFIPLAEEAGLIVALGDWVLAAAARQLRQ 531 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + P+ + IN+AS L+ ++ E A+I++ +P ++ L +ES+++ + ER+ Sbjct: 532 WAEAGLA-PVRVSINLASPSFLEEQVAEKCSAIIAQEGIAPEQVVLELTESLLVVDAERT 590 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSI 902 + L LR+ G +L+LDDFGT S LSYL P D +K + + +T T K AI SI Sbjct: 591 IVRLNSLREKGFALSLDDFGTGFSSLSYLKRFPLDELKIDRAFVTDVTRGGKDAAIALSI 650 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I + ++A+ + L C Q + PL + +L Sbjct: 651 IELGHQFGMRVVAEGVETRAQADFLLANRCPIQQGFLFSPPLPPDRFAAIL 701 >gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 1499 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 132/462 (28%), Positives = 242/462 (52%), Gaps = 12/462 (2%) Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G + + + D + ++ + + A+ D+LTG+PNR F L +L+ + Sbjct: 1032 GVLRQRVARLLDAS---RAEKHVHQLAYHDSLTGLPNRALFRKHLEKLLNRV-HSEKRMF 1087 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ +D+D++K +ND LG VGD +L + RI L+ D++ARL G+ F +IL ++ Sbjct: 1088 AILFLDLDRFKLVNDTLGHDVGDLLLKAAADRIVHCLRSGDMVARLGGDEFTVILEEISS 1147 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 S A + ++ P L +E+ ++ SIG + + + +S ++K+A+ AM+ AK Sbjct: 1148 SEVAEGVATKICGVLSKPFAFLGQEMYISTSIGISLYPNDGEDTSTLIKHADTAMFRAKE 1207 Query: 687 RGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 +G + + + R++++ DL A++ E + Y P + L +++G+EALI+W Sbjct: 1208 QGNSYQFYEEGMETAAARRLVLEADLRRALDKKEFTVCYQPQVELSTGKLIGMEALIRWH 1267 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G +S SEF+ +AEE +I +I ++L + SW Q P I +N++ ++L Sbjct: 1268 HPERGLVSPSEFIPLAEETGLIVSIGKWVLREACVQMQSWLRQGFG-PFRIAVNVSGREL 1326 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 +L + + A++ +T SP ++L +ESVVM + + +LR++GI L +DDFGT Sbjct: 1327 EKGDLVDKIIAVLEETGLSPELLELEITESVVMKCADAAIPKFRKLREMGIKLAIDDFGT 1386 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P DT+K + + AI+ II +A ++ ++A+ + Sbjct: 1387 GYSSLNYLKRFPVDTLKVDRCFVRDIMDNSDDAAIIVGIIALAHSLRLKVVAEGVETHGQ 1446 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK-LLKER---FPLVK 961 L CD IQ +++ PL N I + +L +PL Sbjct: 1447 EAFLKEHHCDSIQGFYLSQPLSANGIEQTILHRHRKGYPLSS 1488 >gi|254457256|ref|ZP_05070684.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] gi|207086048|gb|EDZ63332.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] Length = 574 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 142/574 (24%), Positives = 265/574 (46%), Gaps = 28/574 (4%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHG----PIRNWL 453 + E + V + ++ D D V +G + I L Sbjct: 8 KLKKSNEELAYIVKHAVSEIYILDFETLDYVFANDGALQNIGYTLDELLKLNVYDINKTL 67 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 H+ ++ V D + + I+ + Y+ Sbjct: 68 TRKHVESL-RASCAINDSVSNISEHT-------RKDGTSYTVQASIQSIIYQEKKA--YV 117 Query: 514 GIANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 DI+ E ++ + + A D LTG+PNR F DRL+ + S + + Sbjct: 118 LFDTDISKLKKVQKELREQKDILHHQAHHDALTGLPNRILFNDRLSQGIKKSKRHNEI-L 176 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 + ID+D++K+IND LG GD VL +RR ++ D L+RL G+ F +I Sbjct: 177 ALFFIDLDQFKQINDSLGHDTGDVVLKEASRRFSSKIREEDTLSRLGGDEFSVIAGGLKE 236 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + + A + +A PI + + +T SIG + + ++ +LK A++AMY AK Sbjct: 237 ASEASVLANKFIECMAEPIVVGAHTLYLTCSIGISFYPQDGQSAENLLKYADVAMYKAKD 296 Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N+ +++ ++ L A++N E L Y P I M + I+G+EALI+W Sbjct: 297 EGRNNYQTYSSKLTELMHEQVTMRTSLHKALKNDEFILNYQPQIDSMTDRIIGMEALIRW 356 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 +HP+ G +S ++F+ +AEE I ++ ++++ + SW ++ P + + +N+A K Sbjct: 357 NHPELGRVSPAKFIPLAEETGFIVELDRWVMQEAMSKLSSWYEEGLNPGM-LALNLAMKQ 415 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + ++ E ++ + +T I+L +E +M NP+ S L + K+GI+L +DDFG Sbjct: 416 IQKSDFLEFLKNTMKETNCLSEWIELEVTEGEIMKNPDESIATLKEINKLGITLAIDDFG 475 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL +P + +K + S + + E +AI +++I +AK+++ ++IA+ + + Sbjct: 476 TGYSSLSYLKKLPVNKLKIDQSFIKDTPDDEDDVAITKAVIALAKSLKMSVIAEGVETKA 535 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L C IQ + + P+ + +L E+ Sbjct: 536 QKDFLILNECLQIQGYYYSPPVDAQKMRDMLIEQ 569 >gi|325275281|ref|ZP_08141237.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] gi|324099589|gb|EGB97479.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] Length = 854 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 136/562 (24%), Positives = 260/562 (46%), Gaps = 15/562 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + +R + D +W+ D + A++ G G N L Sbjct: 301 ALEASEQRFRAVAESASDWIWETDRHHRLTYLSQRFASVTGYPVEDWLGQPLNQLLACDT 360 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + L + + L+ +R + Q + I R + + + + G A+D Sbjct: 361 TPLSPWLDALATADPQQLANLRCTYR--DQNGQNRYCRISARAIWHQD-TAVGLRGTASD 417 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT++ + I + D LTG+ NR L L L ++ + D +K Sbjct: 418 ITDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGTDSPPLTLLLLDL--DNFKP 475 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG A GD VL + R+ + + D++ARL G+ F ++L +N +I F + Sbjct: 476 INDSLGYAAGDAVLQEVAARLRDTTRDGDLVARLGGDEFIVVLGGMDNRQEIDRFCARLI 535 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696 + P+ + + + ASIG A + + E+++ A++A+Y AK G + F Sbjct: 536 GLLQQPVMFDSQPLHIGASIGIAQTRTQGFDAGELIRCADIALYQAKADGKSTWRYFASE 595 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ R ++ DL A+ N E L Y P RL D +V +EALI+W HP+ G + Sbjct: 596 MNQQIQYRRQLENDLRRALRNQEFELHYQPRYRLSDLRVVAVEALIRWQHPQEGLLGPDT 655 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I A+ ++L R + W I + +N++ L +++ + ++ Sbjct: 656 FIPLAEQSDIIVALGRWVLHEACRTALDWPA-----DILVSVNLSPAQFLRSDVVQDVRE 710 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + R++L +E+V++ + E + + L+++G+ L +DDFGT S L YL Sbjct: 711 ILLGTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLRTY 770 Query: 877 PFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD++K + ++G + A++++II + K + T+ A+ + E + L C Sbjct: 771 PFDSLKIDKRFISGLSTNGGSDRAVVQAIINLGKAMGLTVTAEGVETEQQLAMLQMDRCH 830 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 +Q +++ PL ++ LL+ Sbjct: 831 EVQGYYLSRPLDTAAMRALLQR 852 >gi|119470796|ref|ZP_01613407.1| hypothetical protein ATW7_05636 [Alteromonadales bacterium TW-7] gi|119446023|gb|EAW27302.1| hypothetical protein ATW7_05636 [Alteromonadales bacterium TW-7] Length = 752 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 142/570 (24%), Positives = 261/570 (45%), Gaps = 17/570 (2%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + S ER +L V D + +D V P T+ G N Y Sbjct: 182 QLKSTEERLNLFAKCVESFTDALAIYDKNFKLVDINPSFLTLFGGMREQYLNKDFNLPGY 241 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 D I+D +Q E ++R + + I I + N I Y+ + Sbjct: 242 ----DTSYVENIIDVVRQ--TEHIQQEIKLRNNERVLLPIEISIDEIKNEQNQITNYVVV 295 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D+TE+KK+ + + +D T +PNR F L ++ + ++V D+D Sbjct: 296 YSDLTERKKAESQLHNLSNRDRTTSLPNRNLFFTNLHKLV-----QQDAHHALLVFDLDN 350 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +KKIND LG +GD +L L R+ +L + D+ RL G+ F +++ + N+ I A Sbjct: 351 FKKINDSLGHQLGDSLLAKLAMRLNKLTRENDVFYRLGGDEFALVMSNTNDLHVITRTAK 410 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VES 694 +I+ P + E+ +T+S+G + T +LKNA+ AMYHAK +G ++ + Sbjct: 411 QFLAAISTPFKMAGHELAITSSVGIVLFPEDGNTPEVLLKNADTAMYHAKKKGNSYLFFN 470 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ R+ I+ + ++ + Y P + + ++ G+EAL+++ PK G IS Sbjct: 471 DTMNRQAVKRLQIENLMRFGLKEDHFEVYYQPKMNIRTGKLTGMEALVRFITPKKGIISP 530 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAEE I I +L + RD+ W D + +N+++K +L + Sbjct: 531 GVFIPIAEETGQIIDIGEVVLNKACRDVKKWLDDGLFNG-RVAVNLSAKQFSLPDLTSRI 589 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ K ++L +E VM +P + ++ L GI L +DDFGT S L+YL Sbjct: 590 DIILQKNALPSYFLELEITEGTVMDDPNEAINIMRSLSARGIHLAMDDFGTGYSSLAYLK 649 Query: 875 YIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +T+K + + + E+ ++ SI+ +A N++ ++A+ + I L + C+ Sbjct: 650 QFPLNTLKVDKAFIDDMKNERGRNMVDSIVTIAHNLDLHVVAEGVEQAHQIDILKTLNCE 709 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963 +Q + + PL + + LK++ + Sbjct: 710 TVQGYYYSKPLSKDEFTEFLKQQQSKATPS 739 Score = 91.9 bits (227), Expect = 5e-16, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 20/146 (13%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIA----TILGLASGSMHGPIRNWLPYIHI 458 +R V GSGD +WDW+I V TI+G IH Sbjct: 68 EKRLKSTVEGSGDTLWDWNIKTGEVIRINDKYMMNSPTIMGFPPN---------KGLIHP 118 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517 D + +L + + +RV+ ++HW++ R + + ++N LR G Sbjct: 119 QDIPHVEHLLKKHFAEQSVFFEATYRVKDTFGKWHWVLDRGKVIEKDANLAPLRMTGTVR 178 Query: 518 DITEQKKSLEGILCNA-----FQDNL 538 DI++ K + E + A F D L Sbjct: 179 DISQLKSTEERLNLFAKCVESFTDAL 204 >gi|326941459|gb|AEA17355.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 767 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 156/725 (21%), Positives = 314/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 52 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 111 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 112 EDHNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 171 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 172 HSIVRMQNNS------LTKRLQAFNAQLEEKVTVRTSDLVHKSEALSQKQQKFKSLYEYH 225 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 226 PDPIFTIDLNGTFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 283 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 284 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 340 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 341 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 399 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + + + + E ++T+ Sbjct: 400 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 459 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 460 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 519 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 520 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 579 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 580 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 638 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 639 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 698 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 699 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 758 Query: 951 KLLKE 955 +LL+ Sbjct: 759 ELLEN 763 >gi|270156987|ref|ZP_06185644.1| response regulator/GGDEF domain/EAL domain protein [Legionella longbeachae D-4968] gi|289164595|ref|YP_003454733.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150] gi|269989012|gb|EEZ95266.1| response regulator/GGDEF domain/EAL domain protein [Legionella longbeachae D-4968] gi|288857768|emb|CBJ11612.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150] Length = 750 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 132/569 (23%), Positives = 261/569 (45%), Gaps = 24/569 (4%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH- 457 + S D + D+ + ++ + + + H Sbjct: 188 SLQQSLSILRSTFESSTDGILVTDLNYKIIDCNSRFVSMWAIPKAMLEIN-DGLIILYHM 246 Query: 458 ------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + L+ + + + P + I+ Sbjct: 247 LNQLFKP---KKYLEELNRLKKNINQISSTVVSF--KNGKT--LECYSLPHRLYD-VIIG 298 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + +DITE+ + + A D LT +PNR +DR+ +D + + L+ ++ Sbjct: 299 RVWSFHDITERANLEKRLTYQALHDPLTQLPNRALLIDRIRASIDNAQ-NLKLKFAILYC 357 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND L VGD +L + +R G L++ DILAR+ G+ F ++ ++ + Sbjct: 358 DLDRFKLVNDSLSHEVGDTLLRMIGQRWGLLVQDGDILARMGGDEFVMLC-HIDDVDTVY 416 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + S+ P + R + +T ++G + + T++++LKNA+LAMY AK +GGN Sbjct: 417 TIANKILNSLKEPFKITNRNLFITTALGISIYPQDGETANDLLKNADLAMYQAKEQGGNQ 476 Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + V + +++ +L A+ N+E +L Y P + + ++ +EALI+W+HP+ Sbjct: 477 FSFYDVRLYEHYKQCFLLEAELHNALNNNEFFLAYQPQFNIDQQGLLSVEALIRWNHPEK 536 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G I +F+ EE +I I ++L + R I W + P + + +NI S+ LL Sbjct: 537 GVIFPMDFIPFTEETGLIIPIGEWILREVCRQIDMWHKKNL-PYVQVAVNITSRQLLQPN 595 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + ++ +++ +P ++ SE+VV+ +P+ +L +L+++GI + LDDFGT S Sbjct: 596 FIDFVKNTLNEYQLNPHHLEFEISENVVITHPD-IIYMLNQLKQLGIKIALDDFGTGNSS 654 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 ++YL + D +K + S + + I+ +II MA++ +IA+ + + + L Sbjct: 655 INYLKQLHIDCIKIDQSFVQSIPTSHSDGVIIEAIISMARSFNFKVIAEGVESQEQLDFL 714 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956 + CD +Q + PL I K +K+ Sbjct: 715 KKQHCDQVQGFLFSEPLTPKEIEKYMKKH 743 >gi|229058393|ref|ZP_04196777.1| Sensory box/GGDEF [Bacillus cereus AH603] gi|228719902|gb|EEL71492.1| Sensory box/GGDEF [Bacillus cereus AH603] Length = 800 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 164/760 (21%), Positives = 306/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + I F + N S + ++ Sbjct: 56 ILFLSIGDVFLSFIFPIIDLLLLLLGISLIFRPAIFNAKSK----LFIFILVLTGLAITD 111 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + + + + ++ + Y ++ + + L Sbjct: 112 YLYFYLQDDLSDRSLILLRCLYRVFLLLIAIAAAIPKNASSRRNYFIIDPTFGKKLLVIF 171 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 172 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNSD------LTEMLKVF 225 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + V Q S + + ER D + + + + +L Sbjct: 226 NNQLEQKVSQRTEDLINKSNDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 285 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G DR L LQ + + W + Sbjct: 286 GKNSDELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 342 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT KK + I AF D +T I NR F L ++ + Sbjct: 343 IVPIM-IEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQKELEKSIERA 401 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 402 RKTQG-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 460 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ + ++ D + + + + ++ SIG A + I ++ +L++A+ Sbjct: 461 IIVHNHT-EQQLLDLCETLFRITEEAFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 519 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P + ++ Sbjct: 520 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPNALENNELFLLYQPQVDSKAGMVI 579 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L+ R + W + + Sbjct: 580 GAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKM 638 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + S I L +E + M + + + L L+ G+ Sbjct: 639 GINLSAIEFEQKDFVQTIISTIEEVGVPASSIDLELTERIAMVDEKETLAKLKALKSYGV 698 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+ +II +A + +I Sbjct: 699 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGNSTDGNEIIHTIISLAHTLNMKVI 758 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + +K L Sbjct: 759 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLS 798 >gi|284041657|ref|YP_003391997.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] gi|283945878|gb|ADB48622.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] Length = 740 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 126/602 (20%), Positives = 261/602 (43%), Gaps = 12/602 (1%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 T R I +GG V ++ ++ + + +R + + Sbjct: 136 TETGRERWITILARPIGGAHGTSRRGVVCTFADVTSSVEAARRLREERDRAQHYLEVAST 195 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYR 475 +V D +LG A + G R+W + DR + R + + Sbjct: 196 LVVVLDAGGRVELVNRQGCELLGYAEHELVG--RDWNETVVPPGDRRDARAVFAQLLAGE 253 Query: 476 RGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + + E + + + R + ++ G + + D+TE++++ + A Sbjct: 254 QLPAERGETFLLTKAGEERKIAWRNAVVRDATGTVASVLCSGEDVTERRRAEAQLAYLAH 313 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LTG+PNR ++L L + ++ + +D +K +ND LG A GD VL Sbjct: 314 HDRLTGLPNRAPLEEQLQRDLARARRTGG-SVALVQVGLDNFKLVNDSLGHAAGDAVLSE 372 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLK--IADFAIAMRKSIAMPINLLEREI 652 +R+ +L + D++AR G+ F ++L + + ++ P + E Sbjct: 373 TAQRVAQLTRAGDVIARQGGDEFMLLLDCGAEEAQVVAQLAGDRVMAALEQPFAVAGAEF 432 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFRSDRVMIKEDL 711 + ASIG A + + + + K+A++AM+ AK GG V + ++ +R+ + L Sbjct: 433 HIGASIGIALFPGNANNAESLFKHADMAMHQAKRSGGGAVVFYERGAAEARERLSLTSRL 492 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A++ EL L + PI R+ D +V +EAL++W+ P+ G + + F+ +AEE +I+ I Sbjct: 493 RRAIDGDELRLHFQPIYRVEDGVLVAVEALVRWEDPEHGLVPPAGFIPVAEETGLIEGIG 552 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 +++E + R W + P + N++ + L +L + + I++ P + Sbjct: 553 SWVVEALCRQASRWAREGFRP--RLCFNLSPRQLRQPDLVDSIARTIARHELPPGQFCAE 610 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +E+ V+ + R LL L + G+++ +DDFG+ S L+ L +P +K + S + Sbjct: 611 LTETAVLSDERRHSSLLDELHEAGLAIAIDDFGSGHSSLARLRDLPVQVLKVDRSFLRRV 670 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 AI+ +++ + + T + + + + + L R G Q + P+ + + Sbjct: 671 PEDPGSTAIVAAVLELGTALGMTTVVEGVEDDAQLALLRRHGAPLAQGFLLGRPVPADQL 730 Query: 950 LK 951 + Sbjct: 731 DR 732 Score = 48.4 bits (114), Expect = 0.006, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 47/173 (27%), Gaps = 22/173 (12%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 L+ ++ Q + + V G + V D V+ + IL Sbjct: 22 GRLVSRGLVVDAAPQQRARQALRAAERLSRAVVDGLEEGVLVLDANLHPVSWNASVLRIL 81 Query: 439 GLASGSM-----HGPIRNWLPY-------IHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 G+ + + + D R++ ++ Sbjct: 82 GVTPEQLADVEQLAQAPATMSLRYDSGKPVTPRDNPALRSLRH------GAPVRATLHRE 135 Query: 487 AADNQFHWMIIRIRPMSNSNGDILR-YIGIANDIT---EQKKSLEGILCNAFQ 535 + W+ I RP+ ++G R + D+T E + L A Sbjct: 136 TETGRERWITILARPIGGAHGTSRRGVVCTFADVTSSVEAARRLREERDRAQH 188 >gi|330501334|ref|YP_004378203.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328915620|gb|AEB56451.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 1274 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 138/572 (24%), Positives = 254/572 (44%), Gaps = 21/572 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 R V + + + ++ V + + + G + + Sbjct: 710 ARQEAEARYRTLVEHAPEAILLFNPDGGIVECNENALRLFRYRREELLGRSIQSISPLRQ 769 Query: 459 NDRDNFRTI----LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D + V ++ R + + +R+ M G+ L Sbjct: 770 ADGRLSSRAGKTFMRQAVAGEAPVFEWNHR--DSAGRQLPCEVRLVRMP---GEGLLIRA 824 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 DI+E+++ I A+ D LTG+PNR+ LDRL +D + +L ++ ID+D Sbjct: 825 SVTDISERQRYQREIERLAYSDELTGLPNRRLLLDRLQHAMDRENREGSL-GALLFIDLD 883 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LK 629 +K +ND LG VGD +LV +T R+ L+ D LARL G+ F ++L + + Sbjct: 884 HFKTVNDSLGHLVGDALLVEVTTRLARELRTEDTLARLGGDEFVVLLEALGSEPQAVAEH 943 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A + + + + E+ ++ASIG A +S++LK A+ AMY AKH G Sbjct: 944 AAAVGEKLLRGLQGSCLIDGHELAISASIGIALHPMGLQRASDILKQADTAMYRAKHAGR 1003 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + F R+ ++ +L A+ +L LV+ P + L D+ + G E L++W HP Sbjct: 1004 NALHFFAPEMQAAIDQRLQLQGELRQAIARQQLQLVFQPQLTLSDDRVAGAEVLLRWMHP 1063 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G I +F+ +AEE +I+ I ++LE+ + W+ Q P + + +N++ ++L Sbjct: 1064 ERGEIGPDQFIPLAEETGLIQDIGQWVLEQACATLARWQAQ--WPQLVLAVNLSPRELRQ 1121 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 E ++ + ++L +E V++ + ER + RL+ G+ +DDFGT Sbjct: 1122 AGCVERVEQCLRAHGVPAHALELEITEGVLLEDVERCIGNMQRLKAQGVRFAIDDFGTGY 1181 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL +P D +K + S + ++++I+ +A+N++ +A+ I + Sbjct: 1182 SSLTYLKRLPLDRLKIDRSFVADLDGAASGRMLVQTILMIARNLDLECVAEGIEQPSQLA 1241 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L GC Q P+ L L+ R Sbjct: 1242 LLREQGCALGQGYLFGKPMDEAEFLAWLQARQ 1273 Score = 88.9 bits (219), Expect = 4e-15, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 101/332 (30%), Gaps = 24/332 (7%) Query: 218 LIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL------IWRACSEIALSSSLIIFLFM 271 + + L + + + + +AL++ L+ F Sbjct: 136 FLAFAVLMPATLVAFGLQSNLWLTGFQVSEHWAQASLAVWLSDTINLLALTAPLLAFCTP 195 Query: 272 YLHWNRWHAK-------VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324 +L W ++ S + + A++ L + L Sbjct: 196 WLRRRGWLRTRSSVVAPALPVSRSLAGWLLATSVFLVLMLLSAGLPAQLALPLLGLSMLV 255 Query: 325 FIIYHGMKGYERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 + H G VLL+ A L +W L A N + L+ +V+ Sbjct: 256 LALRHAFAGALYGVLLVFAATLPLPLWRGSLSFAELDLQRNQLHFAVLLLMGATLVVGRA 315 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR---DRVTTTPDIATILGL 440 + ++ LA + R +LA+ S V D + V + I G Sbjct: 316 LSDLRQALARSA---QMQRQLARANLAMEASPLGVTIADARQPDLPLVYCNSAFSQITGY 372 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G +L + + L + + R R D + W + + Sbjct: 373 RADEALGRNCRFL--LGKDRVQLELQPLRAALRDGRSG-HAVVRNYRKDGKPFWNEVVLA 429 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 PM + G I ++G+ +D+TE+ + + Sbjct: 430 PMRDEQG-ISHFVGLQHDVTERVELAAKVEQQ 460 Score = 76.1 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 2/156 (1%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 ++ + V+Q + + ER L + + +ILG Sbjct: 571 LVRIYGVVQDISERKRTESQLRERDERLRLFFEAPLIGMALTTQSFGWEEVNQKLCSILG 630 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + + +W H +D + L+ + + + R AD Q + + + Sbjct: 631 RSRDEVLAS--SWQQLSHPDDLPAEQASLEQVLLGSSDGFEMDKRFLRADGQVVFTRVSL 688 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 R + +G ++ + DI+ ++++ Sbjct: 689 RAVRGGSGRQAIFLLLVEDISARQEAEARYRTLVEH 724 Score = 54.6 bits (130), Expect = 8e-05, Method: Composition-based stats. Identities = 32/341 (9%), Positives = 87/341 (25%), Gaps = 23/341 (6%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 +V +++ ++ ++ +L + + L + + Sbjct: 254 LVLALRHAFAGALYGVLLVFAATLPLPLWRGSLSFAELDLQRNQLHFAVLLLMGATLVVG 313 Query: 271 MYL-HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329 L + A+ + + + A + L ++ Y Sbjct: 314 RALSDLRQALARSAQMQRQLARANLAMEASPLGVTIADARQPDLPLVYCNSAFSQITGYR 373 Query: 330 GMKGYERAVLLIPAWILIFIWF---------------IGLWMAITKRLDNDIIQPAL--- 371 + R + + + + + + + A Sbjct: 374 ADEALGRNCRFLLGKDRVQLELQPLRAALRDGRSGHAVVRNYRKDGKPFWNEVVLAPMRD 433 Query: 372 -VGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 G + + T + A + + S + W + + Sbjct: 434 EQGISHFVGLQHDVTERVELAAKVEQQRSQLLRQSHLFSQTEDIANLGGWVLETSDYSMF 493 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 + I+ +R L Y + L + L E R+ A Sbjct: 494 WSDGCYRIVDRDIQQGPPDLREVLDYYDTPSQALIMQTLQAASSGM-DDLDIEVRLVARL 552 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + +R + +G ++R G+ DI+E+K++ + Sbjct: 553 GG-RLVRLRGMAERDEDGSLVRIYGVVQDISERKRTESQLR 592 >gi|229110945|ref|ZP_04240506.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] gi|228672526|gb|EEL27809.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] Length = 785 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 168/782 (21%), Positives = 316/782 (40%), Gaps = 36/782 (4%) Query: 192 RGIIIGVASLLAIFLT------IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245 I++ L +L I ++ L F + ++L + + F + N Sbjct: 16 LYIVVTAIFTLEWYLFNKPSANILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNA 75 Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS----- 300 S + ++ +L+ YL + V ++ + + + Sbjct: 76 KSK----LFIFILVLTGLAITDYLYFYLQDDLSERSVIFLRCLYRVFLLFIAIAATIPKN 131 Query: 301 ----FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356 Y ++ + L +I +K + LI + F++ + Sbjct: 132 TSSKRNYFIINPTFGEKLLGIFPYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHT 191 Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 + + L L + + TV Q S + + ER D Sbjct: 192 IVRMQNKE------LTKTLKVFNNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPD 245 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 + D + + +LG S ++ G D+ + Sbjct: 246 PILTIDSNGIVLNINQAGSMLLGKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSS 303 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 LQ + + W + I P+ G + DIT K+ E I AF D Sbjct: 304 SSLQLRVKNNNEKDILFWY-VTIVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHD 361 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +T I NR F L + + + + ++ ID++++K IND LG ++GD VL + Sbjct: 362 TVTEIGNRIFFQQELDRSIKRAQKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVA 420 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 +R L LAR+ G+ F II+ ++ ++ D + + P + + ++ Sbjct: 421 KRFRTCLSPTIPLARIGGDEFAIIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSL 479 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA 714 SIG A + I ++ +L++A++AMY AK +G N V + S + R+ +++DL A Sbjct: 480 SIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNA 539 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 +EN+EL+L+Y P I +++G EALI+W HP+ G IS EF+ IAEE I +I + Sbjct: 540 IENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWT 599 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 L++ R + W + + IN+++ + + + M + I + + I L +E Sbjct: 600 LQKACRQLKEWHSA-GFSNLKMGINLSAIEFEQKDFVQTMISTIEEIGVPANSIDLELTE 658 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892 + M + + L L+ G+ L++DDFGT S L+YL P DT+K + + Sbjct: 659 RIAMVDERETLSKLKALKSFGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTS 718 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 I+++II +A + +IA+ + + + L R C IQ + + P+ + + Sbjct: 719 TDGDEIIQTIISLAHTLNMKVIAEGVETKEQLTVLQRNVCYLIQGYYYSKPVNEDEFIGF 778 Query: 953 LK 954 L Sbjct: 779 LS 780 >gi|226357499|ref|YP_002787239.1| diguanylate-cyclase [Deinococcus deserti VCD115] gi|226319490|gb|ACO47485.1| putative diguanylate-cyclase [Deinococcus deserti VCD115] Length = 764 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 151/658 (22%), Positives = 278/658 (42%), Gaps = 41/658 (6%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 + G + + +A+ D + L + LI Sbjct: 105 ASVAGPPHLRFYAGVPLTLESGLTVGTLAVMDTSPRDGLTEHQAHLLGHVASLI--VEQL 162 Query: 389 HVLATGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 H QG+ ER + D+V+ D + + G + S G Sbjct: 163 HARRETARQQGL----ERLHHDVIHNVQDVVFQTDSRGCWSFLNSAWSRLTGHDTQSSLG 218 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L +IH +D+ + + + + + R A F W + R + +S G Sbjct: 219 RSA--LEFIHPDDQAQVQQAFGTVLTGQAATCRQHVRHVTAGGAFAWFDVYARAVHDSQG 276 Query: 508 DILRYIGIANDITEQKKSL-------------------------EGILCNAFQDNLTGIP 542 + G DIT K++ +A +D LTG+ Sbjct: 277 RVTGAAGTLRDITGAKQAELHLRAEKADLERRVREHTHELAQLSAQAQHDALRDPLTGLG 336 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F RL +L+ R V+++D D++K++ND G + GD++L + R+ Sbjct: 337 NRTMFQHRLRGLLEDGW--PARRAAVVLLDCDRFKQLNDTFGHSAGDELLRLVAGRLARE 394 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 ++ PD L+RL G+ FG++L + + + + + RE V S G Sbjct: 395 VRGPDTLSRLGGDEFGLLLGGVDTPEMALGVMQRVLRVVQQTATVQGREWPVQVSAGVVL 454 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSEL 720 E+L+NA++A+ HAK R + VE F+VS + +++DL A+ N +L Sbjct: 455 LHDQDHAVDEVLRNADIALCHAKRRTRDKVEVFKVSMHTALLARTELEDDLRQALRNGDL 514 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 + Y P++R+ D +VG EAL +W+HP+ G IS +EF+ +AE+ +I ++ + E+ Sbjct: 515 HPHYQPLVRVQDGHLVGFEALARWNHPERGPISPAEFIPVAEDSGLIIDLDRAIFEQACA 574 Query: 781 DIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 W+ M P+ + N +++ L + +QA +++T S + + L +ES+++ Sbjct: 575 QYQQWQAAGLMSAPLTLSSNASARQFLLPDFAPFVQATLARTGLSANLVHLEITESLILE 634 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897 L L+ +G+ L +DDFGT S L+Y+ + +K + S E Sbjct: 635 QSHVVTANLAALQALGVHLHIDDFGTGYSSLAYVQRLAASALKIDRSFTNRIGQAEAGEE 694 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++R+I+ MA+ + ++A+ + + L +GCD Q H + PL L++ Sbjct: 695 LVRAILGMARALGMHVVAEGVETDEQWVWLREVGCDLAQGFHFSRPLAALDAEALVQR 752 >gi|254561421|ref|YP_003068516.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254268699|emb|CAX24658.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with PAS sensor [Methylobacterium extorquens DM4] Length = 777 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 145/549 (26%), Positives = 247/549 (44%), Gaps = 29/549 (5%) Query: 407 QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + +W D V G + + Sbjct: 242 FRFLFESNPLPMWLVDQDSARFVAVNEAAVAHYGYSREAF---------------LARGL 286 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L V + R R R AD + + R ++ G +G A D+TEQ+++ Sbjct: 287 QDLSEAVAFSFARDGRLHRHRRADGSLIDVTLFERSLAFE-GRPA-VLGAAIDVTEQRRA 344 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 I A D LTG+PNR F RL + A ++ +D+DK+K +ND LG Sbjct: 345 EARITHMAHHDALTGLPNRALFTTRLAAAITEHART-GAGAALLCLDLDKFKLVNDTLGH 403 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD +L ++ RI L D++ARL G+ F ++L ++ ++ A + ++++ P+ Sbjct: 404 PAGDTLLRAVAERITACLHGEDLVARLGGDEFAVLLR-TPDAGTVSAVAGRIIEALSHPV 462 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 L +RE + SIG A S +L++A+LA+Y AK GG+ F + DR Sbjct: 463 RLGDRECQIGVSIGIACLPEHGTDSDTLLRHADLALYRAKADGGSIAHCFEAAMDSWDRS 522 Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + DL A +L L Y P++ + IVG EAL++W HP G I SEF+ +AEE Sbjct: 523 RRRREADLHEAFARGDLALAYQPVVGVRSRAIVGFEALLRWHHPVEGAIPPSEFVPLAEE 582 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I ++L + + W D P+ I +N++ D L ++ ++ + Sbjct: 583 TGLIVPIGAWVLRQACAEASLWAD-----PVRIAVNLSPVQFRDPGLVATVREALAFSGL 637 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 +P R++L +ESV++ E + L LR +G+ + +DDFGT LSYL PFD +K Sbjct: 638 APHRLELEVTESVLLAASEANVATLHALRDLGVRIAMDDFGTGYCSLSYLQKFPFDKIKI 697 Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S ++ G AI++++I + ++ +A+ + E+ L GC+ +Q Sbjct: 698 DRSFVSRLGEDPHSTAIVQAVIGLGASLGIVTVAEGVETEVQFAHLRAEGCEEVQGYLFG 757 Query: 942 SPLGFNSIL 950 P+ + Sbjct: 758 RPIPAPQAV 766 >gi|229168485|ref|ZP_04296208.1| Sensory box/GGDEF [Bacillus cereus AH621] gi|228614891|gb|EEK71993.1| Sensory box/GGDEF [Bacillus cereus AH621] Length = 883 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 157/724 (21%), Positives = 316/724 (43%), Gaps = 26/724 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + ++ I ++ Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 227 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V + + L +I +K + LI + F++ + Sbjct: 228 EDDNSHKNHFIVNPILGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + R+ ND + L + V + S+ + ++ Sbjct: 288 HSIV--RMQNDTLTKRLQV----FNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L + + T + ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + +++ P + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDYDSLFKLCNQLFENMKKPFVIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG + + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGISIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NAIQNEELFLLYQPQVDSGSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + + W + I +N+++K+ + + + ++ T S + L Sbjct: 696 WTLQQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + E + I+++II +A + ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 815 TCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYANAFT 874 Query: 951 KLLK 954 +LL+ Sbjct: 875 ELLE 878 >gi|239904849|ref|YP_002951587.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239794712|dbj|BAH73701.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 725 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 152/594 (25%), Positives = 273/594 (45%), Gaps = 35/594 (5%) Query: 385 TVIQHVLATGYFSQGIFSDGERQS----------LAVL---GSGDIVWDWDIVRDRVTTT 431 T ++ L + Q + +R L + GS D++I+ Sbjct: 147 TAVEVALFKHHTEQELRRSEKRYRELFSAMLNAFLLLRHCPGSSQGQDDFEILG----AN 202 Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 P L++ + G +R LP I + L + R F +D Sbjct: 203 PAFERATSLSNDEIVGHTLRQTLPGIEP----FWIDTLAAVAATGRP---VRFENYLSDL 255 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 +++ P + D+TE+K+ E + F D LTG+PNR LDR Sbjct: 256 NMYFLAQAYSP------QPGQVAVALEDVTERKRGEERLRYRTFHDALTGLPNRALCLDR 309 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 + ++ + N ++ +D+D++K +ND LG VGD +L + R+ ++ D +A Sbjct: 310 IARAIERAKRRSNYIYALLFLDLDRFKLVNDSLGHLVGDGLLRRVADRLRREVRQLDTVA 369 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 R+ G+ F ++L + A+R+ + +P + R+I VTAS+G + Sbjct: 370 RVGGDEFVVLLEEIASPGDALRIVKAVRERLRVPFVVDGRQIYVTASLGVVLGPADYERP 429 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPII 728 E+L+NA +AM A+ G V F S + ++ +L + E L Y PI+ Sbjct: 430 EELLQNAAIAMNAARSAGCGRVRVFDWSMRERAERVMDLETNLREGLVRDEFVLHYQPIL 489 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD- 787 L + G+EAL++W + EF+ AE+ +I + +L R + WR Sbjct: 490 DLATRRLRGVEALVRWRRVDGELVPPGEFIPAAEQSGLIIPLGAVVLTEACRALARWRAG 549 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 P F+ +N++++ +L + + + + +P+ +KL +ESV+M +PE + L Sbjct: 550 SLGDSPFFMAVNLSARQFTQPDLVKQVVTALRREAMAPADLKLEITESVLMEHPESAMLK 609 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMA 906 L LR++G+S+ +DDFGT S LSYL P DT+K + + ++G E+ I+RS++ +A Sbjct: 610 LRGLRELGVSIGIDDFGTGYSSLSYLQRFPIDTLKVDRAFVSGMEEQGNRVIVRSVVSLA 669 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 N+ ++A+ I + +L+R+GCD Q A P+ + I+ LL + P Sbjct: 670 HNLGYDVVAEGIETAAQLDDLSRLGCDMGQGFLFARPMEESGIVALLDRQDPPA 723 >gi|307942753|ref|ZP_07658098.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Roseibium sp. TrichSKD4] gi|307773549|gb|EFO32765.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Roseibium sp. TrichSKD4] Length = 900 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 155/632 (24%), Positives = 287/632 (45%), Gaps = 24/632 (3%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 +P + L + + AI RL + + + L + + Sbjct: 263 FLPPFTLTVLVACVIASAILHRLISPSLSYLIAYAHELRQGRANRSHQKSRFQEFNTLAT 322 Query: 400 IFSDG--------ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG---SMHGP 448 +FSD + + GS V+ + + + +LG SG + G Sbjct: 323 LFSDAFEANQRTNAQFRDLIDGSLQGVFVH-ANKHILYVNNALLEMLGYESGNKKQLVGK 381 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + + YE R + D W+ +R +S NG+ Sbjct: 382 PVT--DLYAKEEHRQLNQVYKLRADGGTAPRIYEARAQRQDGSVVWLEQHVRMISW-NGE 438 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 Y DIT++K+ + I NA D++TG+PNR FLDRL + + + + T+ Sbjct: 439 EAFY-ATVLDITDRKRQEQQIALNANYDSVTGLPNRYLFLDRLKQAIGRAQ-SKHEKCTL 496 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D++K IN+ LG GD +L ++ R+ ++L + ARL G++ G++L + +S Sbjct: 497 LFLDVDRFKSINETLGHEAGDQLLANIAWRVQQILGPSESAARLGGDQIGVLLNTVKDSW 556 Query: 629 KIADFAIAMRKSIAMPINLLEREITV-TASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A+ + ++++ + TAS+G A + +L++AE AM+ AK Sbjct: 557 DAEQKALGLLEAVSAARPGDVETNHLATASVGIAIGPADGDNPDLLLRHAEFAMFQAKLE 616 Query: 688 GGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GGN + + + ++ L A++ +L L Y PI+ +I+ EAL++W+ Sbjct: 617 GGNRCRFYSHERNDAATRAMKLEFALTSAIDQKKLKLHYQPIVDFESGQIISCEALLRWN 676 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 P++G+I+ SEF+ IAEE +I + ++L+ + + I +N++ + Sbjct: 677 DPEFGDITPSEFIPIAEETGLIVPLGDWVLQEACSFFKDCKKRGLDLQC-ISVNVSPRQC 735 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFG 864 D+ + +I++T +PS++ L +E+V+M + ++L LR IG+ L+LDDFG Sbjct: 736 RDDGFVSRVAQVIAETRIAPSQLHLEITETVMMDDSSIDPAMVLDALRDIGVKLSLDDFG 795 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL +P D +K + S + E+ ++R+I MA+N+ T+I + Sbjct: 796 TGYSSLSYLKRLPIDILKIDSSFILDLEEDEEDQVLIRAIRSMAENLGITVICEGAETAP 855 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L +GC IQ H+A P+ + L Sbjct: 856 QCRILADLGCQLIQGYHIARPMPERDFIHFLT 887 >gi|161521080|ref|YP_001584507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia multivorans ATCC 17616] gi|160345130|gb|ABX18215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia multivorans ATCC 17616] Length = 776 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 132/567 (23%), Positives = 249/567 (43%), Gaps = 13/567 (2%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--W 452 +Q + E L V + + + + P +L A G + G + Sbjct: 208 RIAQQLARSEEHHRLVVNSLNEGILVVSRDGVVIASNPSANRML-RAKGELVGRRMSTVI 266 Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDI 509 L + + + + L Y AD W+ P+ + Sbjct: 267 LRKLSEDGTPIAPSRWPSRRALTSGTPVLDYTVGFGLADGDVIWVRGNAVPIVKPGDTQA 326 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTV 568 + +DI +++ + + A +D LTG+ NR+ DR+ + R + Sbjct: 327 ASVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAI 386 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+ +KK+ND G GD +L S+ R+ ++ L R+ G+ F I++ ++ Sbjct: 387 LFLDLVGFKKVNDTAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPE 446 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 +A A + +IA P + E + SIG + ++ +++NA+ AMY AK RG Sbjct: 447 ALAALAREVIDAIAKPFAVANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRG 506 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 NH F + I++ L A+ ++ L L Y P++ VG EAL++W Sbjct: 507 RNHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARTGRTVGAEALLRWTS 566 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ + Sbjct: 567 PELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQFH 625 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L E + +++T P ++L +E V+M + +L L ++ + +++DDFGT Sbjct: 626 D-GLVESVSRCLAQTRLDPGALELEITEGVLMNDTATVLPMLEALTEMNVRISVDDFGTG 684 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + E Sbjct: 685 YSSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGMKVTAEGVETEAQS 744 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951 L ++GCD Q + PL + Sbjct: 745 WFLQQIGCDMQQGYLFSRPLDPVDYAR 771 >gi|229174176|ref|ZP_04301711.1| Sensory box/GGDEF [Bacillus cereus MM3] gi|228609297|gb|EEK66584.1| Sensory box/GGDEF [Bacillus cereus MM3] Length = 781 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 156/774 (20%), Positives = 301/774 (38%), Gaps = 54/774 (6%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ + + ++ + + G + S+ Sbjct: 37 ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 92 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + H + + + + ++ P T+S + + +I Sbjct: 93 YLYFYLQDDLSHRSLILLRCFYRVFLLFI-AIAATIPRSTSSRRDYFIINPTFGKKLLVI 151 Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 + I + ++ + + V ++I + Sbjct: 152 F-----------------PYLSVAILIGFTFKEQTSSSTLITGNCIAFVFVLIRHTIVRM 194 Query: 388 Q---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 Q S + + ER D + D Sbjct: 195 QNKDLTETLKVFNNQLEQKVSKRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDSNGT 254 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + + +LG S ++ G D+ L +G R + RV+ Sbjct: 255 VLNINQSGSMLLGKDSAALIGKEC--FSIFLDEDKPELEVALK--MGKRCSSSALQLRVK 310 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + G + DIT K+ + I AF D +TGI NR Sbjct: 311 NNNEKDIHFWYVTIVPIMIEGQTFGSYIMVKDITRMKQQQDEINYLAFHDTVTGIGNRIF 370 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F L ++ + + ++ ID++++K IND LG A+GD VL + +R L Sbjct: 371 FQQELDRSIERVQKTQD-KFGLLYIDLNRFKTINDTLGHAIGDSVLKEVAKRFRTCLSPA 429 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 LAR+ G+ F II+ ++ ++ D + + P + + ++ SIG A + Sbjct: 430 IPLARIGGDEFAIIVHNKT-EQQLLDLCEILFRITEEPFVINQHSFYLSLSIGIALYPFG 488 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724 ++ +L++A++AMY AK G N V + S + R+ +++DL A+EN+EL+L+Y Sbjct: 489 GTNATTLLQHADIAMYSAKEEGSNAVCIYDETLSLKITRRLQLEQDLPNAIENNELFLLY 548 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P + +++G EALI+W HP+ G IS EF+ IAEE I I + L++ + Sbjct: 549 QPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIITIGKWTLQQACSQLKE 608 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + + IN+++ + + + + + I + + I L +E + M + + + Sbjct: 609 WHSA-GYTNLKMGINLSAIEFEQKDFVQTIISTIEEIRVPANLIDLELTERIAMVDEKET 667 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 L L L+ G+ L++DDFGT S L+YL P DT+K + + I+++I Sbjct: 668 LLKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 727 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +A + +IA+ + + + L + C IQ + + P+ + LK L Sbjct: 728 ISLAHTLNMKVIAEGVETKKQLTVLQQNACYLIQGYYYSKPVNEDEFLKFLSRE 781 >gi|297528808|ref|YP_003670083.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. C56-T3] gi|297252060|gb|ADI25506.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. C56-T3] Length = 818 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 139/599 (23%), Positives = 269/599 (44%), Gaps = 23/599 (3%) Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 R A+ + +L ++ A + + + S+ R + + + Sbjct: 231 GRKQAMWTMMAMFLASAVAYLLALHQQMERK-ALAVYKKTLASNEHRLRRLAEMTMEGLI 289 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + V + +LG + + + Sbjct: 290 VY-AHGKVVEVNEAVCRLLGYSESELIHLPIG----------ELVVDGSMKLNRPHEEPE 338 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 + E +R D I +R + G+ + + D+TEQK++ E + A D LT Sbjct: 339 RLEIELRRKDGTTFPAEI-VRRRYDYEGEKV-TVAAVRDLTEQKQNEERMRYIANHDELT 396 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PN+++ + L + + V+ +++ K IND G AVGD+VL+ L + Sbjct: 397 GLPNKEAMYKAVERCLVEAKQHRH-EAAVIFLEVSGMKTINDFYGYAVGDEVLLHLAQEW 455 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 E K + R SGN F ++ + + K + A + ++ PI + E+ VT +IG Sbjct: 456 KE--KQGMTVGRWSGNEFIALVPNSTH-QKAEEMAKQLIEAADEPIVVNGMELYVTVNIG 512 Query: 660 FASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717 + + + +++ A++A Y A K + ++ ++++ ++ DL A+EN Sbjct: 513 ISVYPKDGEDAKTLIRKADIARYEARKKAASDFLFFTEPMAIRLNEKMAMERDLRRALEN 572 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E L Y P IRL D +++G+EALI+W HP+ G +S S F+ +AE+ MI IN +++ Sbjct: 573 EEFELYYQPQIRLHDRQVIGMEALIRWRHPEKGMVSPSLFIPVAEQTGMIIPINEWVIRT 632 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 D+ P + + IN++ + + + L++ P + L +E + Sbjct: 633 ACEQTKQLLDRF--PDLSVSINLSPYEFESRRFVDKLARLLADAGLPPHHLDLEITERMT 690 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA 897 M + ER+ +L +L+ +G+++++DDFGT S LSYL +P D +K + S + K+ Sbjct: 691 M-DTERALDILSKLKGLGVTISMDDFGTGYSSLSYLTDLPIDRLKIDRSFVQHIQGKKDV 749 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 IL +II + NI ++A+ + E + L CD Q + + PL ++ +++ L E+ Sbjct: 750 ILPAIIRLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYDELVRFLNEQ 808 >gi|39933467|ref|NP_945743.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|192288826|ref|YP_001989431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] gi|39647313|emb|CAE25834.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains [Rhodopseudomonas palustris CGA009] gi|192282575|gb|ACE98955.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] Length = 745 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 147/573 (25%), Positives = 242/573 (42%), Gaps = 30/573 (5%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + L + + + + G + Sbjct: 180 ELKQREASFRLMFESNPVPMIVCAVNDERILAVNDAAVEHYGYSPSEFASLTI------- 232 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512 ++ + + E R AD + I R ++ NG+ Sbjct: 233 -----RRLQAFETELPWAGNHTHEERTARTWKHVKADGSLIDLAIYSRQLT-YNGEPAVL 286 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + DITE+K++ + A D LTG+PNR S RL +L + + V+ + Sbjct: 287 LALM-DITERKRAEMRLAFMAHHDGLTGLPNRNSLRKRLDELLIQTRRTGE-KIAVLFVG 344 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 ID +K +ND LG AVGD +L + RR+ L+ D LARL+ + F +I I Sbjct: 345 IDNFKAVNDTLGHAVGDKLLRGVARRLRSTLREEDPLARLNSDEFAVIQTGIKRPEDIVL 404 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + +IA P L + V ASIG A S ++L NA++A+ AK Sbjct: 405 LAKRLLHAIAEPYLLQGHSVVVGASIGIAVAPGDGDDSEKLLMNADMALSRAKKDTRGTF 464 Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F + + R I+ DL A+++ L Y P++RL D I G EAL++W HP+ G Sbjct: 465 SFFEVGMDARAQARRKIETDLRAALQHEVLRPYYQPLVRLADGRITGSEALVRWPHPERG 524 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 IS +EF+ +AE+ +I AI +L D W D + + +N++ L Sbjct: 525 MISPAEFIPVAEDTGLINAIGAQILRSACMDAARWPD-----DVRVAVNLSPLQFRVGNL 579 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ P R++L +E++++ + L LR +G+ +++DDFGT S L Sbjct: 580 LSVVMDALKQSGLPPRRLELEITETLLLEKSSQVLATLHALRALGVRISMDDFGTGYSSL 639 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL PFD +K + S + G + R AI+RSII + + TI A+ + E ++ L Sbjct: 640 SYLRSFPFDKIKIDQSFVRGLCDNRESQAIVRSIISLGNGLGVTITAEGVESEAELSWLR 699 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 GC Q + I LL + Sbjct: 700 AEGCQEAQGFLFSQARPNAEITGLLDLQQSGAS 732 Score = 42.2 bits (98), Expect = 0.40, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 36/149 (24%), Gaps = 15/149 (10%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-HGPI 449 A + R A+ + D + A I ++ G Sbjct: 51 RAVAAALEEARRSHARLREAIDILPQGIVFLDAEGRYILWNKRYAEIYKASADQFSPGAR 110 Query: 450 RNWLPYI------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 I + + + +V AD + + R Sbjct: 111 IQDTMRIGIARGDYPEAEGREEEWIAERLQRMFNPGSSHEQVL-ADGRCIQIEERTT--- 166 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532 S+G IG+ DITE K+ Sbjct: 167 -SDG---GIIGLRVDITELKQREASFRLM 191 >gi|332535236|ref|ZP_08411040.1| sensory box/GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035317|gb|EGI71820.1| sensory box/GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 750 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 144/570 (25%), Positives = 266/570 (46%), Gaps = 17/570 (2%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + S ER +L V D + +D V P T+ G G + L Sbjct: 181 QLKSTEERLNLFAKCVESLTDALAIYDKNFKLVDINPSFLTLFGGVREQYLGKDFS-LSG 239 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + + I+ R +Q E ++R ++ + I I + N I Y+ + Sbjct: 240 YEPSYTNRIIEIVKE-----REHIQQEVKLRNSERILLPIEISIDEIKNDQNQITNYVVV 294 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D+TE+KK+ + + +D T +PNR F L ++ L N ++V D+D Sbjct: 295 YSDLTERKKAESQLHNLSNRDRTTSLPNRNLFFTDLQKLVKL-----NSHHALLVFDLDN 349 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +KKIND LG +GD +L L R+ +L + D+ RL G+ F +++ N+ I A Sbjct: 350 FKKINDSLGHQLGDSLLAKLAMRLNKLTRENDVFYRLGGDEFALVMSDTNDIHVITRMAK 409 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VES 694 +IA P + E+ +T+S+G + T +LKNA+ AMYHAK +G ++ + Sbjct: 410 QFLAAIATPFKMAGHELAITSSVGLVLFPEDGNTPELLLKNADTAMYHAKKKGNSYLFFN 469 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ R+ I+ + ++ + Y P + + ++ G+EAL+++ PK G IS Sbjct: 470 DTMNRQAVKRLQIENLMRFGLKEDHFEVYYQPKMNIRTGKLTGMEALVRFITPKKGIISP 529 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAEE I I +L + RD+ W D + +N+++K +L + Sbjct: 530 GVFIPIAEETGQIIEIGEVVLNKACRDVKEWLDSGLFSG-RVAVNLSAKQFSLPDLTSRI 588 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ K ++L +E VM +P+ + ++ L GI L +DDFGT S L+YL Sbjct: 589 DVILQKNELPSYFLELEITEGTVMDDPKEAIAIMRSLSARGIHLAMDDFGTGYSSLAYLK 648 Query: 875 YIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +T+K + + + E+ ++ SI+ +A N++ ++A+ + I L ++ C+ Sbjct: 649 QFPLNTLKVDKAFIDDMTNERGRNMVDSIVTIAHNLDLHVVAEGVEQAHQIDILKKLNCE 708 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963 +Q + + PL + + LK++ + Sbjct: 709 TVQGYYYSKPLSKSEFTEFLKQQQTKAAPS 738 Score = 88.9 bits (219), Expect = 4e-15, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 23/202 (11%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL---ATGYFSQGIFSDGERQ 407 + L + + L+L +I + + + + +R Sbjct: 11 LVVLAYSFELFAFESSLNYNSDNILILASAIIALALPYLLFVIHKLRRSRRQLRLSEKRL 70 Query: 408 SLAVLGSGDIVWDWDIVRDRVT-TTPDI----ATILGLASGSMHGPIRNWLPYIHINDRD 462 V GSGD +WDW+I V T++G IH +D + Sbjct: 71 KSTVEGSGDTLWDWNIKTGEVIRINDKYLMDSTTLMGFPPN---------KGLIHPHDIN 121 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITE 521 N +L + + +R++ ++HW++ R + + ++N LR G DI++ Sbjct: 122 NVEHLLKVHFAEQSAFFEATYRIKDTFGRWHWVLDRGKIIEKDANLSPLRMTGTVRDISQ 181 Query: 522 QKKSLEGILCNA-----FQDNL 538 K + E + A D L Sbjct: 182 LKSTEERLNLFAKCVESLTDAL 203 >gi|119945537|ref|YP_943217.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] gi|119864141|gb|ABM03618.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37] Length = 598 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 128/445 (28%), Positives = 223/445 (50%), Gaps = 12/445 (2%) Query: 521 EQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 E+K K E + AF D LTG+PNR+ +DRL L + + VM +D+D +K I Sbjct: 152 EEKGKLTEKLNDLAFYDTLTGLPNRRILIDRLHHALASNVR-EGCDSAVMFVDLDHFKDI 210 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFA 634 ND LG GD +L+ + +R+ L+ D +ARL G+ F +IL + + + K A Sbjct: 211 NDTLGHGFGDLLLIQIAQRLASCLRKGDTVARLGGDEFVLILENLDKKTIEAAAKANAIA 270 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P L + T SIG + T+ ++LK A++AMY AK GGN + Sbjct: 271 DKILAALNKPYQLDMHKCYSTVSIGAVFFDHQGNTAEDLLKQADIAMYQAKQAGGNQIRF 330 Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F V ++ +L LA+E S+ +L Y + + ++G EALI+W HP+ G + Sbjct: 331 FNPEMQEIINVRITLENELRLAIEKSQFHLYYQIQMDSAN-RVLGAEALIRWMHPERGLV 389 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 + F+ +AEE +I I +++E I W+ + + + +N+++K E Sbjct: 390 LPATFIPLAEETGLILPIGKWVIETACAQIKVWQKEPLTRNLTLSVNVSAKQFRQKNFVE 449 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 +Q+ + + + +KL +ES++ + E + ++ L KIG+ +LDDFGT S L Y Sbjct: 450 KVQSAVERYAVPGNLLKLELTESLLQYDIEVTIAMMKALNKIGVQFSLDDFGTGYSSLQY 509 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P D K + S + AI+++I+ MA+ ++ +IA+ + E + L Sbjct: 510 LKRLPLDQFKIDQSFVRDIATDNNDKAIVKAIVAMAQILDIDVIAEGVETEEQRQLLLGK 569 Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955 GC + Q + P+ + L+ Sbjct: 570 GCVFFQGYLFSKPIPIDEFEALICR 594 >gi|56418936|ref|YP_146254.1| hypothetical protein GK0401 [Geobacillus kaustophilus HTA426] gi|56378778|dbj|BAD74686.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 758 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 139/593 (23%), Positives = 266/593 (44%), Gaps = 22/593 (3%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + + + L+ A + + + S+ R + + + + Sbjct: 176 MWTMMAMFLATAVAYLLALHQQMERKALAVYQKTLASNEHRLRRLAEMTMEGLIVY-AHG 234 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 V +LG + + L D + R +E + Sbjct: 235 KVVEVNEAACRLLGYSESELIHLPIGELV------VDGSMKLNHPHEESER----FEIEL 284 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R D I +R + G+ + + D+TEQK++ E + A D LTG+PN++ Sbjct: 285 RRKDGTAFPAEI-VRRRYDYEGEKV-TVAAVRDLTEQKQNEERMRYIANHDELTGLPNKE 342 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 + + L + V+ +++ K IND G AVGD+VL+ L + E K Sbjct: 343 AMYKAVERCLVEAKQH-RYEAAVIFLEVSGMKTINDFYGYAVGDEVLLHLAQEWKE--KQ 399 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 + R SGN F ++ + + K + A + ++ PI + E+ VT +IG + + Sbjct: 400 GMTVGRWSGNEFIALVPNSTH-QKAEEMAKQLIEAADEPIVVNGMELYVTVNIGISVYPK 458 Query: 666 SKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723 + +++ A++A Y A K + ++ ++++ ++ DL A+EN E L Sbjct: 459 DGEDAKTLIRKADIARYEARKKAASDFLFFTEPMAIRLNEKMAMERDLRRALENEEFELY 518 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P IRL D +++G+EALI+W HP+ G +S S F+ +AE+ MI IN +++ Sbjct: 519 YQPQIRLHDRQVIGMEALIRWRHPEKGMVSPSLFIPVAEQTGMIIPINEWVIRTACEQTK 578 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 D+ P + + IN++ + + + L++ P + L +E + M + ER Sbjct: 579 QLLDRF--PDLSVSINLSPYEFESRRFVDKLARLLADAGLPPHHLDLEITERMTM-DTER 635 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903 + +L +L+ +G+++++DDFGT S LSYL +P D +K + S + K+ IL +II Sbjct: 636 ALDILSKLKGLGVTISMDDFGTGYSSLSYLTDLPIDRLKIDRSFVQHIQGKKDVILPAII 695 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + NI ++A+ + E + L CD Q + + PL ++ +++ L + Sbjct: 696 RLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYDELVRFLNGQ 748 >gi|152995778|ref|YP_001340613.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] gi|150836702|gb|ABR70678.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] Length = 659 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 143/535 (26%), Positives = 254/535 (47%), Gaps = 13/535 (2%) Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRV 485 T + + G+ + + H+ D +SF+G +R L E R+ Sbjct: 128 TTLSFAVFEQSGIYLEASKCFTEQFGDIEHVRDLFAVAGAANSFIGRLAQRESLSQEIRL 187 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 + W I + +N + Y+ +DI E++ + D LT +PNR Sbjct: 188 STKNG-VRWHKIEVSHQPMTN---VVYLLT-HDIQEERDHEVALYRLNNYDGLTHLPNRN 242 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 +L + L + + ++ +D+D +K IND G VGD+++ + RI + Sbjct: 243 LLYQQLESALVNARKRHR-QFGLLYLDLDGFKVINDNFGHRVGDELIQRVAERIKGSIPS 301 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 L RL G+ F ++L + N ++ A ++ ++ + + + E+ +TASIG AS+ Sbjct: 302 SACLYRLGGDEFVVVLENTNEIEELESIAQSIMQNASNTYPVAKMEMMITASIGIASYPQ 361 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLV 723 +LKNA+ AMY AK G N + + + + L A+E + L Sbjct: 362 HADDVDNLLKNADAAMYRAKSTGHNMYCVYEDHMADNINAHLTLGGGLRKAIEEEQFILH 421 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P IRL DE +VG EALI+W HP+ G IS +F+ +AEE +I + +++ R R + Sbjct: 422 YQPKIRLPDEIVVGAEALIRWVHPELGMISPDQFIPLAEESGLILPLGEWVIRRACRQLQ 481 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 WR+ PI + +N++S+ + +L + +Q + +T P ++L +ES++M + ++ Sbjct: 482 EWREAGLD-PIKLSVNLSSRQFMQADLVDMVQRALEETGVDPEYLELELTESMLMADAQQ 540 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRS 901 S L RK+G++L++DDFGT S L+YL P T+K + S + AI+++ Sbjct: 541 SIEKLHSFRKLGLTLSIDDFGTGYSSLAYLKKFPIQTLKIDRSFIHDLGLDCDNDAIVKA 600 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I MA ++ +IA+ + + L C +Q + PL + L LK Sbjct: 601 TIAMANSLNLKVIAEGVENRSQVDVLNGYDCQEVQGYLFSKPLSSDDFLMYLKAH 655 >gi|89096893|ref|ZP_01169784.1| hypothetical protein B14911_18350 [Bacillus sp. NRRL B-14911] gi|89088273|gb|EAR67383.1| hypothetical protein B14911_18350 [Bacillus sp. NRRL B-14911] Length = 744 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 144/562 (25%), Positives = 259/562 (46%), Gaps = 21/562 (3%) Query: 401 FSDGERQSLAVLGSGD--IVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIH 457 +R V S D V ++ V ++G +S + G + +++ Sbjct: 195 QESEDRYRGLVELSPDFIGVISGNV---IVYINEAGCRLIGASSKEQLLGKPI--INFVN 249 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 L + G+ ++E + + D + + P+ + ++ IG Sbjct: 250 KEATFEIYNTLLAADSDTAGKRRFEVQAKRLDGVLVDVEVSSMPIRYGGREAVQVIG--R 307 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+KKS + AF D LTG+PNR + +L IL+ + V+ +D+D++K Sbjct: 308 DITERKKSERTMEYMAFYDTLTGLPNRNEIMKQLQGILN----SGKEKAAVLFLDLDRFK 363 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND G + GD +L R+ + + ++AR G+ F I+ E +I A A+ Sbjct: 364 IINDTKGHSTGDLLLKKAGIRLEDTVGSLGLVARQGGDEFIILFE-EKEKQQIEGAARAI 422 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + P L E +T SIG + + ++K+A+ AMY AK RG N+ + + Sbjct: 423 IEQFNKPFILEGEEFYITPSIGISLYPEHGTDQETLIKHADTAMYLAKERGKNNFQFYTS 482 Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S S ++ ++ L A++ EL L Y P I L ++ G EAL++W P + Sbjct: 483 SLEGLASRKMALENGLRKALDRGELLLHYQPQIDLKTGKLKGTEALVRWQRPDGHLVPPG 542 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AEE +I + ++L W + I +NI+ + L D E ++ Sbjct: 543 EFIPLAEETGLIVPMGKWILRTACEQHKRW-KLEGAGSVPIAVNISVRQLEDPEFIMYVK 601 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++S P ++L +ES +M N E++ + L L+KIGI L++DDFG S LSYL + Sbjct: 602 TVLSSCDIEPGCLELEITES-IMQNIEKATIALNELKKIGIRLSIDDFGKGYSSLSYLKH 660 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P DT+K + S + + +++++II M N+ +++A+ I + + L C Sbjct: 661 LPIDTIKIDKSFVDDILDPAQNGSLVKAIIDMGLNLNFSVVAEGIEHKEQAEFLLENNCP 720 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 Q + + P+ + +K Sbjct: 721 VGQGYYFSRPVTGEVFKEFIKS 742 Score = 101 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 66/204 (32%), Gaps = 2/204 (0%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 + Y V +I + + ++ L+ ++ + +LI ++ Sbjct: 3 FFARNYTILVWIIILCFIFLVDEAIKTALAYYFPPRNLWVFELIHTVISVGLLIVLFLVF 62 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + +R + +W ++ R+ T I + G S + Sbjct: 63 IQKGIQKTTAELRKSNQRLNNIFDTLDVAIWHHNMKSGRLMITSGIEKLYGFPRESFYRD 122 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 W IH ND + +R+ + W+ R P+ + G Sbjct: 123 PDLWRKVIHPNDVSVLNEREQKVKQGE--PVVSIYRIIRPEGGIRWIQDRGIPVLDKKGR 180 Query: 509 ILRYIGIANDITEQKKSLEGILCN 532 ++ + + DIT++++S + Sbjct: 181 LIEFSSVLFDITDRQESEDRYRGL 204 >gi|229134552|ref|ZP_04263363.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] gi|228648945|gb|EEL04969.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] Length = 883 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 158/724 (21%), Positives = 316/724 (43%), Gaps = 26/724 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + ++ I ++ Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 227 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V + + L +I +K + LI + F++ + Sbjct: 228 EDDNSHKNYFIVNPILGKKVLFVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + R+ ND + L + V + S+ + ++ Sbjct: 288 HSIV--RMQNDTLTKRLQV----FNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ + L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L + + T + ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F I++ + + + + + +S+ P + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFESMEKPFVIYEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG + + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGISIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I I Sbjct: 636 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ + W + I +N+++K+ + + + ++ T S + L Sbjct: 696 WTLQQACEQMKRWHA-LGYSHLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + E + I+++II +A + ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 815 TCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHTNAFT 874 Query: 951 KLLK 954 +LL+ Sbjct: 875 ELLE 878 >gi|228940595|ref|ZP_04103161.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228819101|gb|EEM65160.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 801 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 165/755 (21%), Positives = 307/755 (40%), Gaps = 20/755 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 54 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 109 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P T+S + + +I Sbjct: 110 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPKNTSSKRNYFIVNPTFGEKLLVI 168 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + L L + + Sbjct: 169 FPYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKDLTEALKVFNNQLE 228 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 TVIQ S + + ER D + D + + +LG S Sbjct: 229 RTVIQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESA 288 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G D+ + + LQ + + W + I P+ Sbjct: 289 ALIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 345 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G + DIT K+ + I AF D +T I NR F L + + + Sbjct: 346 -IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTQD 404 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F II+ + Sbjct: 405 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFAIIVHN 463 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 464 QT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 522 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++G EAL Sbjct: 523 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEAL 582 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G IS EF+ IAEE I +I + L++ R + W + + IN++ Sbjct: 583 IRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWYSA-GYSNLKMGINLS 641 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + M + I + + I L +E + M + + + L L+ G+ L++D Sbjct: 642 AIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKVLKSYGVHLSID 701 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P DT+K + I+++II +A + +IA+ + Sbjct: 702 DFGTGYSSLAYLPLYPIDTLKIPKEFVNRIGTFTDGDEIIQTIISLAHTLNMKVIAEGVE 761 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + + L R C IQ + + P+ + + L Sbjct: 762 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFLS 796 >gi|307131184|ref|YP_003883200.1| sensory box/GGDEF family protein [Dickeya dadantii 3937] gi|306528713|gb|ADM98643.1| Sensory box/GGDEF family protein [Dickeya dadantii 3937] Length = 752 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 131/577 (22%), Positives = 241/577 (41%), Gaps = 21/577 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ L + R S D + + +L + Sbjct: 181 AALVMDKLEMRRLDLARRASQARFESIAESSPDAILCVNDRGTITFWNESAEKMLEYSRD 240 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIR 500 + G + I + F L + E RA + + Sbjct: 241 QIVGEH---ISIIVPD---MFVVQLHHLATDKTAIFKGSSIELETRALPGTLIPTELTVS 294 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + RY I DITE+++ E + A +D LTG+ NR L +L Sbjct: 295 --MWHVNNQTRYGIILRDITERQRYEERLFLQAHRDPLTGLANRTLLTSTLEQVLK---- 348 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + +M+ID+D +K IND LG A GD++L S+ +R+ + D++AR+ G+ F I+ Sbjct: 349 -NGEPTAIMIIDLDGFKDINDSLGHASGDEILSSVAKRLQGNVCSGDLVARMGGDEFAIL 407 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L +N+ ++A A + I+ + + +++I +ASIG + + T ++L +A+LA Sbjct: 408 LPKQNDESQVAKLAEKIIYDISQAVPVDDKQINTSASIGLVMYPAHGTTVQDLLTSADLA 467 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N F + L A E E + Y P + L++ ++VG Sbjct: 468 LYQAKADGRNCYRFFTRELREVFQARHAFQLEFIRAYEQEEFEVFYQPQVSLVNSKVVGA 527 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP G + + FM E + I +++ + W I I Sbjct: 528 EALLRWRHPYKGLLGPAAFMSALERGPWAERIGDWVVRSACQQASDWCRSGAG-NFRISI 586 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+ + L + ++ ++++T P ++L +E++++ + E L LR G+ + Sbjct: 587 NLFAAQFRSGMLAQKIKEVLTQTGLKPGALELEITENIILRHDENMMKPLNELRSSGVGI 646 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 DD+GT + LS L + P +K + + + E AI+R+I+ + K+ +IA+ Sbjct: 647 AFDDYGTGYASLSMLKHYPVTRLKIDQTFVRAMCESAPDAAIVRAILYLGKSFGLDVIAE 706 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + + L GC+ Q P+ KLL Sbjct: 707 GVETQEQCERLLNKGCEQAQGYLFGRPMPAEEFEKLL 743 >gi|206977908|ref|ZP_03238796.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|217961168|ref|YP_002339736.1| sensory box/GGDEF family protein [Bacillus cereus AH187] gi|206743908|gb|EDZ55327.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|217067428|gb|ACJ81678.1| sensory box/GGDEF family protein [Bacillus cereus AH187] Length = 908 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 154/712 (21%), Positives = 302/712 (42%), Gaps = 47/712 (6%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG------YERA 337 + I + ++ Y + ++ T+ + L Y I+ + G Sbjct: 198 RKIYIFIFVLISSATFNYIYFYLHNHLSTETITLLRLLYRIPILLIAIAGSISEDHNSHK 257 Query: 338 VLLI---------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 I I + + ++ + I+ + ++I +Q Sbjct: 258 NYFIVNPIIGKKALVIFPYLAVAILIGFTLKEQTASSILITGNCIAFIFVLIRHSIVRMQ 317 Query: 389 ---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 + S+ + ++ D ++ D+ Sbjct: 318 NNSLTKRLQVFNAQLEEKVRLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGVF 377 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + + +LG + + G I D+ + L+ LQ + Sbjct: 378 LNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQESASLQLSSQY-- 433 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D + + + I P+ +G I + DIT KK E I AF D +T I NR F Sbjct: 434 KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAFHDTVTKIGNRAFF 492 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +L I+ + T ++ ++ +D+D++K +ND LG + GD +L + +R L Sbjct: 493 HKKLKRIIKNAKTTES-EFALLYLDLDRFKAVNDTLGHSAGDYILEEVAKRFQSCLPSHT 551 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 L+R+ G+ F I++ + + + + K + + E +T++ SIG A + S Sbjct: 552 HLSRIGGDEFTILIENYTDEDSLFQLCNQLFKCMEKSFVIYEHTLTLSISIGIAIYPHSG 611 Query: 668 ITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725 I ++ +LKNA +AMY AK + ++ R+ +++DL A++N EL+L+Y Sbjct: 612 IDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQ 671 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + +I+G EALI+W+HP+ G IS EF+ IAEE I I + L++ + W Sbjct: 672 PQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRW 731 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + I +N+++K+ + + + A ++ T S + L +E + M + + Sbjct: 732 HTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLELTERIAMMDERETL 790 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSII 903 + L L+ +GI +++DDFGT S L+YL P DT+K + + + + + I+++II Sbjct: 791 IKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTII 850 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +A + ++IA+ + + + L + C IQ + + P+ +S LLK+ Sbjct: 851 TLANTLGMSVIAEGVETKKHVSFLQKNNCQLIQGYYYSKPIHADSFSTLLKK 902 >gi|228973515|ref|ZP_04134099.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980073|ref|ZP_04140389.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228779659|gb|EEM27910.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228786210|gb|EEM34205.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 785 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 165/755 (21%), Positives = 307/755 (40%), Gaps = 20/755 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 38 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P T+S + + +I Sbjct: 94 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPKNTSSKRNYFIVNPTFGEKLLVI 152 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + L L + + Sbjct: 153 FPYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKDLTEALKVFNNQLE 212 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 TVIQ S + + ER D + D + + +LG S Sbjct: 213 RTVIQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESA 272 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G D+ + + LQ + + W + I P+ Sbjct: 273 ALIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 329 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G + DIT K+ + I AF D +T I NR F L + + + Sbjct: 330 -IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTQD 388 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F II+ + Sbjct: 389 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFAIIVHN 447 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 448 QT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 506 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++G EAL Sbjct: 507 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEAL 566 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G IS EF+ IAEE I +I + L++ R + W + + IN++ Sbjct: 567 IRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWYSA-GYSNLKMGINLS 625 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + M + I + + I L +E + M + + + L L+ G+ L++D Sbjct: 626 AIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKVLKSYGVHLSID 685 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P DT+K + I+++II +A + +IA+ + Sbjct: 686 DFGTGYSSLAYLPLYPIDTLKIPKEFVNRIGTFTDGDEIIQTIISLAHTLNMKVIAEGVE 745 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + + L R C IQ + + P+ + + L Sbjct: 746 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFLS 780 >gi|271500473|ref|YP_003333498.1| PAS/PAC and GAF sensor-containing diguanylate cyclase [Dickeya dadantii Ech586] gi|270344028|gb|ACZ76793.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Dickeya dadantii Ech586] Length = 722 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 134/577 (23%), Positives = 244/577 (42%), Gaps = 21/577 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ L + R S D + + +L Sbjct: 152 AALVMDKLEMRRLDLARRASQARFESIAESSPDAILCVNDRGTITFWNESAEKMLEYNRE 211 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIR 500 + G + I + F L + E RA + + Sbjct: 212 QIIGEH---ISIIVPD---MFVVQLHHLATDKTAIFKGSSIELETRALSGSLISTELTVS 265 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 +G+ RY I D+TE+++ E + A +D LTG+ NR L +L Sbjct: 266 --MWRDGNQTRYGIILRDMTERQRYEERLFLQAHRDPLTGLANRTLLTSTLDQVLK---- 319 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + +M+ID+D +K IND LG A GD++L S+ RR+ + D++AR+ G+ F I+ Sbjct: 320 -NGEPAAIMIIDLDGFKDINDSLGHASGDEILASVARRLQDNAHSGDLVARMGGDEFAIL 378 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L ++++ ++A A + I+ + + +++I +ASIG + + T ++L +A+LA Sbjct: 379 LPNQSDEGQVARLAEKIIHDISQAVPVDDKQINTSASIGLVMYPAHGTTVQDLLTSADLA 438 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N F + L A E E + Y P + L++ +IVG Sbjct: 439 LYQAKADGRNCYRFFTRELREVFQARHAFQLEFIRAYEQEEFEVFYQPQVNLVNNQIVGA 498 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP G + + FM E + I +++ + W I I Sbjct: 499 EALLRWRHPYKGLLGPAAFMSALERGPWAERIGDWVVRSACQQASDWCRA-GAKNFRISI 557 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+ + L + ++ ++++T PS ++L +E++++ + E L LR GI + Sbjct: 558 NLFAAQFRSGMLAQKIRDVLAQTGLKPSALELEITENIILRHDENMMKPLNELRNSGIGI 617 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 DD+GT + LS L + P +K + + + E AI+R+I+ + K+ +IA+ Sbjct: 618 AFDDYGTGYASLSMLKHYPVTRLKIDQTFVRAMCESAPDAAIVRAILYLGKSFGLDVIAE 677 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + + L GC+ Q P+ KLL Sbjct: 678 GVETQDQCERLLNKGCEQAQGYLFGRPMPAAEFEKLL 714 >gi|254428831|ref|ZP_05042538.1| PAS fold family [Alcanivorax sp. DG881] gi|196195000|gb|EDX89959.1| PAS fold family [Alcanivorax sp. DG881] Length = 936 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 148/563 (26%), Positives = 275/563 (48%), Gaps = 12/563 (2%) Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 E+Q LA + + ++ D + I G + + G Sbjct: 371 RQAQEQQRLAATVFENAPEGIFILDQEFRFLAVNARFEQITGYSESLVIGRRILEEEQTQ 430 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 N RD + +I + G + E R + + +++ + + ++RY+G+ + Sbjct: 431 PN-RDTYLSITTAL--QESGFWEGEISERRRNGEIFPEWLQMSAVRDEQKRVIRYVGMMS 487 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+T +K++ + + + D LTG+ NR F + L L L+ + + +++ID+D++K Sbjct: 488 DLTTRKETEQQLQFLSNYDRLTGLANRTQFREHLHKSLTLARLN-REKVALLMIDLDRFK 546 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IN+ LG +GD +L + RI + + LAR+ G+ F ++L + I+ + Sbjct: 547 PINESLGHEIGDRLLKAAAERIAQHAGGEEALARVGGDEFTLLLENHGGESGISQQCQKL 606 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++ P + E+ + ASIG + + + + M+ +++A+Y AK GGN+ + +R Sbjct: 607 INAMKKPFLIDGHELLLGASIGISLFPDTAKEAQSMINQSDMAVYQAKRSGGNNFQFYRS 666 Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + +++ ++ L A+ +E + Y P + L I +EAL++W HP G + + Sbjct: 667 NMRVASVEQLALETSLRKAIFKNEFVVYYQPKMELASNRITSVEALVRWQHPTMGLLPPA 726 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AEE +I AI +LER R W Q I + +N+++ + E + Sbjct: 727 DFIPLAEETGLISAIGELVLERSCRQAHKWYKQGLG-NICVSVNLSAHQFRKGNVAEIVD 785 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++S T P ++L +ES++M + E++ LL +LR GI L LDDFGT S LSYL Sbjct: 786 RVLSTTELPPHLLELELTESLIMEDMEQNIELLQQLRTRGIELALDDFGTGYSSLSYLKR 845 Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P DT+K + S + AI R+II MA +++ +IA+ + E + L M CD Sbjct: 846 FPVDTLKIDRSFIMDLDKSPDDAAITRAIIDMAHSLKMNVIAEGVETEEHLSILRDMHCD 905 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ N +L+LL + Sbjct: 906 SIQGYLLSRPVPENELLELLHTQ 928 Score = 125 bits (315), Expect = 3e-26, Method: Composition-based stats. Identities = 51/325 (15%), Positives = 105/325 (32%), Gaps = 18/325 (5%) Query: 216 SMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275 ML ++LG F L L + +++ + + M L Sbjct: 70 RMLSGLALSTPLLLGLAGYLFNPLETLFSPQ-------MLGAQLVCACLGLGLSVMAL-- 120 Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335 + T + + ++ + + +L + + + Sbjct: 121 --AAYSSHFPTVFLYLVMLLGPAVTRLAETQQHHPFSLIVLMSLLGLFFLVAARRINRTG 178 Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI-----LIGFTVIQHV 390 +++ A I ++ + + L+ + Q + + V + Sbjct: 179 HQAMMLQASNRSLIDYLNRARSDAEALNEKLAQEIYERKEARQRLQETNERLESMVQERT 238 Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 A G + + + ER LA+ S +WDW + R T + +LG S Sbjct: 239 QALGETNTALAATSERLELALEASNIGLWDWMLDTGRNYHT-NFDRLLGYDSAYFKNFFG 297 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDI 509 + +H +D R + S R +R+R AD + W+ R + + +G Sbjct: 298 DLETLVHPDDLTRIRRAMVSHFKGEDSRYHAVYRLRHADGSWRWIEDEGRVVSRSRDGRA 357 Query: 510 LRYIGIANDITEQKKSLEGILCNAF 534 R IG DIT+ +++ E A Sbjct: 358 TRMIGTRRDITDDRQAQEQQRLAAT 382 >gi|229151947|ref|ZP_04280143.1| Sensory box/GGDEF [Bacillus cereus m1550] gi|228631502|gb|EEK88135.1| Sensory box/GGDEF [Bacillus cereus m1550] Length = 883 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 160/806 (19%), Positives = 322/806 (39%), Gaps = 60/806 (7%) Query: 203 AIFLTIFYMVNRSSML-----------IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251 ++ + + +VL I +L NL L Sbjct: 81 VFYMFFLFFCLIAFCYKILKECNKWEKAFFICDICIVLTSIFTLEWYLFNQPNLNIFALS 140 Query: 252 IWRACSEIALSSS---------LIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 + + +IF + R ++ S I F ++ + Sbjct: 141 LGDVFLSFLYPIADLLFLLLGVSLIFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLNNH 200 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--------PAWILIFIWFIGL 354 T + R+ +L + L+ I + Sbjct: 201 LSTETIILLRLLYRIPILLIAIAGSISEDHNSHKNYFLVNPIIGKKALVVFPYLAVAILI 260 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLAT 393 + ++ + + + ++I +Q Sbjct: 261 GFTLKEQTSSSTLITGNCIAFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTSDL 320 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + S+ + ++ D ++ D+ + + +LG + + G Sbjct: 321 VHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--F 378 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 I D+ L+ LQ + D +++ + I P+ +G I Sbjct: 379 SIILDEDKHKLALALEKVKQQESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSY 435 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + DIT KK E I AF D +T I NR F +L ++ + ++ ++ +D+ Sbjct: 436 IMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYLDL 494 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K IND LG + GD +L + +R L L+R+ G+ F II+ + + + Sbjct: 495 DRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQL 554 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNH 691 + K + + E ++T++ SIG A + S I ++ +LKNA +AMY AK Sbjct: 555 CNQLFKCMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVS 614 Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + ++ R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ G Sbjct: 615 IYDDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGI 674 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 IS EF+ IAEE I +I + LE+ + + W + I +N+++K+ + Sbjct: 675 ISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFV 733 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + + ++ T S + L +E + M + + + L L+ +GI +++DDFGT S L+ Sbjct: 734 KSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLA 793 Query: 872 YLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + + + + + I+++II +A + ++IA+ + + + L + Sbjct: 794 YLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQK 853 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 C +IQ + + P+ ++ +LL+ Sbjct: 854 NKCQFIQGYYYSKPINIHAFTELLEN 879 >gi|316931621|ref|YP_004106603.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315599335|gb|ADU41870.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris DX-1] Length = 745 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 146/573 (25%), Positives = 245/573 (42%), Gaps = 30/573 (5%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + L + + ++ + G + Sbjct: 180 ELKQREASFRLMFDSNPVPMIVCELNDERILAVNDAAVEHYGYSPSEFASLTI------- 232 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512 D+ + + + E R AD + I R ++ NG+ Sbjct: 233 -----RRLQAFDTELPWSGDQTHEERTARTWKHVKADGSLIDLAIYSRQLT-YNGEPAVL 286 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + DITE+K++ + A D LTG+PNR S RL +L + + V+ + Sbjct: 287 LALM-DITERKRAEMRLAFMAHHDGLTGLPNRNSLRKRLDDLLIQTRRTGE-KIAVLFLG 344 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 ID +K +ND LG AVGD +L + RR+ L+ D LARL+ + F +I I Sbjct: 345 IDNFKAVNDTLGHAVGDKLLRGVARRLRSTLREEDPLARLNSDEFAVIQTGIKRPEDIVL 404 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + ++A P L + + ASIG A S ++L NA++A+ AK Sbjct: 405 LAKRLLHAVAEPYLLQGHSVVIGASIGIAVAPGDGDDSEKLLMNADMALSRAKKDTRGTF 464 Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F + + R I+ DL A+++ L Y P++RL D I G EAL++W HP+ G Sbjct: 465 SFFEVGMDARAQARRKIETDLRAALQHEVLRPYYQPLVRLADGRITGSEALVRWPHPERG 524 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 IS +EF+ +AE+ +I AI +L D W D + I +N++ L Sbjct: 525 MISPAEFIPVAEDTGLINAIGAQILRSACMDAARWPD-----DVRIAVNLSPLQFRVGNL 579 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + ++ P R++L +E++++ + L LR +G+ +++DDFGT S L Sbjct: 580 LSVVMDALKQSGLPPRRLELEITETLLLEKSSQVLATLHALRALGVRISMDDFGTGYSSL 639 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL PFD +K + S + G + R AI+R+II + + TI A+ + E ++ L Sbjct: 640 SYLRSFPFDKIKIDQSFVRGLCDNRESQAIVRAIISLGNGLGVTITAEGVESEAELSWLR 699 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 GC Q + I LL+ + Sbjct: 700 AEGCQEAQGFLFSHARPNAEITGLLELQQSGAS 732 Score = 46.5 bits (109), Expect = 0.025, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 36/149 (24%), Gaps = 15/149 (10%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH-GPI 449 A + ER A+ + D + A I + G Sbjct: 51 RAVEAALEEARRSHERLREAIDLIPQGIVFLDADGRYILWNKRYAEIYKATADQFRAGAR 110 Query: 450 RNWLPYI------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 I + + + +V AD + + R Sbjct: 111 IQDTMRIGIARGDYPEAIGREEEWIAERLQRMFNPGHSHEQVL-ADGRCIQIEERTT--- 166 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532 S+G IG+ DITE K+ Sbjct: 167 -SDG---GIIGLRVDITELKQREASFRLM 191 >gi|222097200|ref|YP_002531257.1| sensory box/ggdef family [Bacillus cereus Q1] gi|229140388|ref|ZP_04268943.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] gi|221241258|gb|ACM13968.1| sensory box/GGDEF family [Bacillus cereus Q1] gi|228642949|gb|EEK99225.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] Length = 911 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 154/712 (21%), Positives = 302/712 (42%), Gaps = 47/712 (6%) Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG------YERA 337 + I + ++ Y + ++ T+ + L Y I+ + G Sbjct: 201 RKIYIFIFVLISSATFNYIYFYLHNHLSTETITLLRLLYRIPILLIAIAGSISEDHNSHK 260 Query: 338 VLLI---------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 I I + + ++ + I+ + ++I +Q Sbjct: 261 NYFIVNPIIGKKALVIFPYLAVAILIGFTLKEQTASSILITGNCIAFIFVLIRHSIVRMQ 320 Query: 389 ---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 + S+ + ++ D ++ D+ Sbjct: 321 NNSLTKRLQVFNAQLEEKVRLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGVF 380 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + + +LG + + G I D+ + L+ LQ + Sbjct: 381 LNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQESASLQLSSQY-- 436 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D + + + I P+ +G I + DIT KK E I AF D +T I NR F Sbjct: 437 KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAFHDTVTKIGNRAFF 495 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +L I+ + T ++ ++ +D+D++K +ND LG + GD +L + +R L Sbjct: 496 HKKLKRIIKNAKTTES-EFALLYLDLDRFKAVNDTLGHSAGDYILEEVAKRFQSCLPSHT 554 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 L+R+ G+ F I++ + + + + K + + E +T++ SIG A + S Sbjct: 555 HLSRIGGDEFTILIENYTDEDSLFQLCNQLFKCMEKSFVIYEHTLTLSISIGIAIYPHSG 614 Query: 668 ITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725 I ++ +LKNA +AMY AK + ++ R+ +++DL A++N EL+L+Y Sbjct: 615 IDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQ 674 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + +I+G EALI+W+HP+ G IS EF+ IAEE I I + L++ + W Sbjct: 675 PQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRW 734 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + I +N+++K+ + + + A ++ T S + L +E + M + + Sbjct: 735 HTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLELTERIAMMDERETL 793 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSII 903 + L L+ +GI +++DDFGT S L+YL P DT+K + + + + + I+++II Sbjct: 794 IKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTII 853 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +A + ++IA+ + + + L + C IQ + + P+ +S LLK+ Sbjct: 854 TLANTLGMSVIAEGVETKKHVSFLQKNNCQLIQGYYYSKPIHADSFSTLLKK 905 >gi|237809846|ref|YP_002894286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Tolumonas auensis DSM 9187] gi|237502107|gb|ACQ94700.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Tolumonas auensis DSM 9187] Length = 753 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 152/689 (22%), Positives = 285/689 (41%), Gaps = 27/689 (3%) Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 A + G A +A + + + A + + + + + ++R Sbjct: 64 RSAILSMAGLFGGALVATIAGVIAGVYRLWLGGATYGVGILTIVISVILGLAYRAAHQRG 123 Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT--------VIQH 389 + L+ + + + + + F ++Q Sbjct: 124 WMSKGPIQLLLFGVLLHTAILLLFSLFPFPILHSFMQQIALPYTVSFALATMLLGLMLQD 183 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGP 448 ++ Q + R V D++ D + P ++ G Sbjct: 184 IINRTKTEQALQDSESRLRAIVQAIPDLMVIIDEDGHYLDALPTTNNQF-YPRALALIGS 242 Query: 449 IRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + + D + + + ++YE R + R +P+ + Sbjct: 243 NLH--SELPPETADRILATVRDSLRLQQTQTIEYE---RDFKMGQRLVEGRAQPLGYTVN 297 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + I +A DIT++K + I AF D LTG+PNR+ DRL + S R Sbjct: 298 NKQVVIFLARDITDRKIKEDEIAWLAFYDPLTGLPNRRLLQDRLHQAMAGSKRSGQ-RAA 356 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ ID+D +K +ND LG GD +L + R+ E ++ D +ARL G+ F ++L N+S Sbjct: 357 LLFIDLDNFKTLNDTLGHDKGDLLLQQVATRLFECVRECDTVARLGGDEFVVMLEELNHS 416 Query: 628 LKIAD-----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 ++A + + P + E +ASIG + + + +S E++K A++AMY Sbjct: 417 EELAAAQSKMVGEKILVKLCQPYLIAGYEHNSSASIGITLFLAHQESSDELMKRADIAMY 476 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N + F R ++ DL + +L L Y P + + I+G EA Sbjct: 477 QAKSAGRNTLRFFDNKMQAIVTSRAELENDLREGLRQQQLLLHYQPQVDVH-GRIIGAEA 535 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP G +S + F+ +AEE +I ++ ++L R + W Q M + + +NI Sbjct: 536 LVRWQHPSRGMVSPAHFIPLAEESGLILSLGDWVLNEACRQLRRWAAQPAMAHLTMAVNI 595 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 +++ + + + + A I P +KL +ES+++ + E L + L+ G+ +L Sbjct: 596 SARQIHQPDFVDQVLAAIHTAGVQPYHLKLELTESLLLEDTEEIILKMTALKACGVGFSL 655 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL +P D +K + S + AI SII +A+++ +IA+ + Sbjct: 656 DDFGTGYSSLAYLKRLPLDQLKIDKSFVHDLLTDPNDAAIASSIITLAQSLGLNVIAEGV 715 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFN 947 E + L +GC Q P+ + Sbjct: 716 ETEAQRQRLEALGCYTYQGYLFGHPVPAD 744 >gi|89091868|ref|ZP_01164823.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp. MED92] gi|89083603|gb|EAR62820.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp. MED92] Length = 735 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 143/567 (25%), Positives = 248/567 (43%), Gaps = 14/567 (2%) Query: 400 IFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + +R +A S D + + + + + + G + + G L Sbjct: 171 LQEKNDRLQIAQKVYDFSKDGIIITNADNEILYVNKALEEMSGFSLNELKGSNPRRLSAG 230 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R + S V G + E + D + + I + + Y+ I Sbjct: 231 QQEKR-LADKLWHSLVKE--GFWRGELWNQHKDGTTYPVSTSITTIPDELNVAKHYVAIH 287 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT +K++ + I A D+LTG+ NR F RL ++L S N +++D+D + Sbjct: 288 RDITAEKQAEKLIRFQATHDSLTGLLNRYEFNLRLESLL-TSVQSRNNSAAFIMLDMDDF 346 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND+ G + GD +L+ + +RI +LL +LARL G+ F I + I + Sbjct: 347 KSINDIQGHSTGDALLMLMAKRIDDLLPDSYLLARLGGDEFA-IFAEYADKSVIHTLTQS 405 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + L + + SIG + + S E+ K A+ A+Y AK GG F Sbjct: 406 LVGAFNQVFELQGLRLRCSTSIGLSLFPHDADNSQELFKCADQALYEAKKNGGACYAVFT 465 Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 I+ L A+E + L Y PI+ + + EAL +W + G I+ Sbjct: 466 PRLRTAAERHQKIRLKLADAIEQERIELHYQPIVDIATGRVSRCEALARWTDDELGPITP 525 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELCEG 813 EF+ +AE +I ++ +++R ++ PI I IN + + L + Sbjct: 526 CEFIKVAEHSGLIHPLSYLIVKRALSELREINSALI-EPIEISINRSPVEYLEQTAQQDF 584 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + L + I + +ES ++ +PE + LL L+ G +L LDDFGT S LSYL Sbjct: 585 ILNLSKEMGIPAELITIELTESFMLKDPELAIRLLTSLKDFGFNLALDDFGTGYSSLSYL 644 Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PFD +K + S +T T ++++II MA+ + IA+ + E ++ + +G Sbjct: 645 KKFPFDFLKIDRSFITDITSTADDYQLVKTIIEMARILGMKCIAEGVEDEKQLQIIESLG 704 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFP 958 C +IQ + + PL + + LK+ FP Sbjct: 705 CRHIQGYYFSRPLNASDFILYLKQAFP 731 >gi|328911387|gb|AEB62983.1| putative sensor protein [Bacillus amyloliquefaciens LL3] Length = 804 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 165/779 (21%), Positives = 309/779 (39%), Gaps = 46/779 (5%) Query: 209 FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL----SSS 264 RS + + ++ + + G L+ VN+ + S A ++ Sbjct: 35 LKTGIRSKLWLIAGSVIMGFGIWSTHFVGMLAVYVNMHMNYEAVPMVSSLGAAISGSFAA 94 Query: 265 LIIFLFMYLHWNRWH-AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 L I L NR V + + +S M + ++ + Sbjct: 95 LYIVSRRILTLNRLITGSVFMGAGISLMHYMGMSAISRVMIMYNPFLFCFSILIAIAASF 154 Query: 324 Y---FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP----------A 370 +K + +F+ M T + Sbjct: 155 VSLKVFFGLAVKKPTEHLTFQKIISSVFMGAAVSGMHYTGMMAASFYADTRRPSSDMEIH 214 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG------ERQSLAVLGSGDIVWDWDIV 424 V I ++I + ++ + Q D +R + + D ++ Sbjct: 215 SFHLSVFITLIIFCFQMLLFFSSHFDRQFFRHDERMKDHEQRFQSLIKHNIDPIFILSPS 274 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + + A + S +NW +I +T ++ L ++ Sbjct: 275 GKILYSNEAGAEM----IHSFGLDSQNWRRHIS----SPLKTYFKQVKKEQQA-LHFDAD 325 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 ++ D ++ + P+ NG Y+ I D+T+Q+++ + I A D+LT +PNR Sbjct: 326 LKT-DIGLFYINVTFIPVLVDNGLDSVYV-ICKDMTKQRQAEKEIHRMAHYDSLTDLPNR 383 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + + RLT +L+ + +L V +D++++K IND LG VGD +L S R+ ++ Sbjct: 384 RHAVQRLTEVLEKKHSHGHLTV-VFFLDLNRFKVINDALGHNVGDRLLQSAAERLSSIIP 442 Query: 605 FPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 +ARL G+ F IIL + I D A + P + E E+ + SIG A Sbjct: 443 DNGFIARLGGDEFIIILTDARSEDDDIDDLAKQIIMQFEKPFIVQEHELITSVSIGIAVS 502 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELY 721 E++K A++AMY +K R + + + + ++ I+ +L A+E Sbjct: 503 PKDGSDGMELMKKADMAMYASKDRNKSKYKYYSAQIGEKEAKKLRIEMELREAIEKKRFV 562 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L Y P D+ I G+EAL++ + +F+ AEE +I + +++ R Sbjct: 563 LHYQPQYSSADQLITGVEALLRVAGADGKLQNPGDFIQAAEETGLIIDLGKWIITEACRQ 622 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W ++ + + INI++K EL +Q ++ P+ ++ +ES+ M + Sbjct: 623 AKEWHEKGYH--LPVAINISAKQFQSEELVPFIQKTLTHYKLPPALLEAEVTESMTMEDR 680 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899 E S+ +L L ++GIS+++DDFGT S LSYL P +K + S + K I Sbjct: 681 EHSKKVLTALTELGISVSIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDLQLHPKSAQIT 740 Query: 900 RSIIPMAKNIETTIIA---KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +II M + ++A + + + K L GCD++Q + + PL I +LL E Sbjct: 741 GAIIAMGHQLSLLVVAEGVEGVETAMQKKLLDEKGCDFLQGFYFSRPLPPEEIEELLHE 799 >gi|228911974|ref|ZP_04075700.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] gi|228847668|gb|EEM92596.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] Length = 785 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 161/760 (21%), Positives = 304/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 38 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 93 Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318 +L+ YL + + + + I L Sbjct: 94 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 153 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 154 PYLAVAILIGFTLKEQTSSATLITGNCIAFLFVLIRHTIVRMQNKD------LTETLKVF 207 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 267 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 268 GKDSAALIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 324 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ + I AF D +T I NR F L + Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 383 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 442 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 443 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I + +++ Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 561 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 620 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 621 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 680 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 740 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 780 >gi|94264442|ref|ZP_01288231.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455132|gb|EAT05354.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 833 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 127/583 (21%), Positives = 247/583 (42%), Gaps = 12/583 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ L SD + + + + + + I G + Sbjct: 257 TLRRALRYAIIRHRRDSDMRLAAAVIKHTREGITISRSDGTIIEVNDAFCRITGYRREEV 316 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G L DR+ + + + G E + + + + ++ I + + Sbjct: 317 IGQNPRLLQS-GRQDREFYVEMWRALTEE--GFWSGEIWNKHKEGRIYPQLLTISAVPDG 373 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G Y+ I +DI+E K+ + + A D LTG+PNR DRL + + R Sbjct: 374 TGKPGHYVAIFSDISEIKEQQQRLERIAHYDTLTGLPNRDLLADRLNHAMVQAIRRQ-TR 432 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V +D+D +K IND G VGD +L +L R+ + L+ D L RL G+ F I Sbjct: 433 LAVAYLDLDGFKAINDTHGHDVGDFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLP 492 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHA 684 ++ + + AMP++ E + V+AS+G + S+ + ++L+ A+ AMY A Sbjct: 493 DNETCLPLLQRLLNAAAMPVSYQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQA 552 Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F + + A+ + E L Y P + + +VGLEALI Sbjct: 553 KQTGKNRYHLFDAVQEVAMRGHHELLGRIKRALNDQEFLLYYQPKVNMRSGVVVGLEALI 612 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G ++ + F+ E+ + A+ ++L + +WR + + +NI++ Sbjct: 613 RWQHPELGLLAPTYFLPAIEDHPLAVAVGDWVLATALAQLAAWRRAG--ISLPLSVNISA 670 Query: 803 KDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L ++ ++ +++ +++L ES + + ++ ++ + R +G+ LD Sbjct: 671 RQLQQDDFVAKLEQQMARWPEVPADQLELEVVESSALADIDQVSKIITQCRAMGVGFALD 730 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P T+K + S + +AIL ++ +A+ +A+ + Sbjct: 731 DFGTGYSSLTYLKRLPARTLKIDRSFVADMLDDPDDLAILEGVLGLARAFNRQTVAEGVE 790 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 L ++GC+ Q A P+ + + + Sbjct: 791 SAAHADSLLKLGCEVAQGYWFAKPMPMAEVAAWVAAYETRSRR 833 >gi|218666510|ref|YP_002426145.1| sensory box-containing diguanylate cyclase, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518723|gb|ACK79309.1| sensory box-containing diguanylate cyclase, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 709 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 134/576 (23%), Positives = 262/576 (45%), Gaps = 11/576 (1%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-R 450 Q ++ + ER + + GD V D + ++G A G Sbjct: 19 ERQSAEQTLWEEKERAEVTLHSIGDAVITTDTEGRVMDMNVVAEALMGYARTEAVGRPLE 78 Query: 451 NWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + + + + + RL + D Q + P+ + G + Sbjct: 79 DVFRIVQEGSHAHLDNPVRRVLEEGQVVRLANHTMLLTKDGQERAIEDSAAPIRDRQGVL 138 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 L + + +D+TE+++ + + A D LTG+PNR F+DRL + ++L V Sbjct: 139 LGVVLVFHDVTEKRRLIAELAHQATHDALTGLPNRVLFMDRLGHDRAQTLRHEHL-LAVG 197 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++D+D +K++ND G A GD +L + +R+ ++ D LAR+ G+ FG++L N + Sbjct: 198 ILDLDGFKQVNDHFGHASGDALLQEMAQRLHREMRSGDTLARMGGDEFGLLLPDVGNLEQ 257 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + D + + + P L + EI +++SIG S+ ++L++A+LA+Y AK G Sbjct: 258 VEDACTRLLEVLRAPFYLGDEEIPLSSSIGLTSYPLDDSLPEDLLRHADLALYAAKAAGR 317 Query: 690 NHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + F + + ++ A++ L L Y P++ + + VG+EALI+ DHP Sbjct: 318 DRYHWFDWPMDKLQQEAMEVRKMTENALDRGRLLLHYQPVVEIGNG-PVGVEALIRLDHP 376 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G + + F + + + I F+L +W Q P+ I +NI++ LLD Sbjct: 377 ERGLLPPAAFAAALDAPRLTRRIGCFVLATALTQTQTWHRQG--MPLRISVNISAHHLLD 434 Query: 808 NELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 ++A + PS +++ +E+ + + +R L ++G+ + LDDFGT Sbjct: 435 QRFLSDLRAALDAHPDLPPSAVEIEITETAPLLDFAGARETLLACNRLGVRIALDDFGTG 494 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 + L+YL +P T+K + S + K AI+ ++ A+ + +IA+ + Sbjct: 495 NASLTYLQKLPAQTIKIDQSFVRDIINDPKDYAIVSGVVTSARLLGLEVIAEGVETAEHA 554 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 L + C +Q +A P+ +I +++ PL+ Sbjct: 555 AMLGHLQCHCLQGYAIARPMAPEAIPGWIRQYKPLL 590 >gi|308173314|ref|YP_003920019.1| sensor protein [Bacillus amyloliquefaciens DSM 7] gi|307606178|emb|CBI42549.1| putative sensor protein [Bacillus amyloliquefaciens DSM 7] Length = 801 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 164/776 (21%), Positives = 308/776 (39%), Gaps = 43/776 (5%) Query: 209 FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL----SSS 264 RS + + ++ + + G L+ VN+ + S A ++ Sbjct: 35 LKTGIRSKLWLIAGSVIMGFGIWSTHFVGMLAVYVNMHMNYEAVPMVSSLGAAISGSFAA 94 Query: 265 LIIFLFMYLHWNRWH-AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 L I L NR V + + +S M + ++ + Sbjct: 95 LYIVSRRILTLNRLITGSVFMGAGISLMHYMGMSAISRVMIMYNPFLFCFSILIAIAASF 154 Query: 324 Y---FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP----------A 370 +K + +F+ M T + Sbjct: 155 VSLKVFFGLAVKKPTEHLTFQKIISSVFMGAAVSGMHYTGMMAASFYADTRRPSSDMEIH 214 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG------ERQSLAVLGSGDIVWDWDIV 424 V I ++I + ++ + Q D +R + + D ++ Sbjct: 215 SFHLSVFITLIIFCFQMLLFFSSHFDRQFFRHDERMKDHEQRFQSLIKHNIDPIFILSPS 274 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + + A + S +NW +I +T ++ L ++ Sbjct: 275 GKILYSNEAGAEM----IHSFGLDSQNWRRHIS----SPLKTYFKQVKKEQQA-LHFDAD 325 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 ++ D ++ + P+ NG Y+ I D+T+Q+++ + I A D+LT +PNR Sbjct: 326 LKT-DIGLFYINVTFIPVLVDNGLDSVYV-ICKDMTKQRQAEKEIHRMAHYDSLTDLPNR 383 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + + RLT +L+ + +L V +D++++K IND LG VGD +L S R+ ++ Sbjct: 384 RHAVQRLTEVLEKKHSHGHLTV-VFFLDLNRFKVINDALGHNVGDRLLQSAAERLSSIIP 442 Query: 605 FPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 +ARL G+ F IIL + I D A + P + E E+ + SIG A Sbjct: 443 DNGFIARLGGDEFIIILTDARSEDDDIDDLAKQIIMQFEKPFIVQEHELITSVSIGIAVS 502 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELY 721 E++K A++AMY +K R + + + + ++ I+ +L A+E Sbjct: 503 PKDGSDGMELMKKADMAMYASKDRNKSKYKYYSAQIGEKEAKKLRIEMELREAIEKKRFV 562 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L Y P D+ I G+EAL++ + +F+ AEE +I + +++ R Sbjct: 563 LHYQPQYSSADQLITGVEALLRVAGADGKLQNPGDFIQAAEETGLIIDLGKWIITEACRQ 622 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W ++ + + INI++K EL +Q ++ P+ ++ +ES+ M + Sbjct: 623 AKEWHEKGYH--LPVAINISAKQFQSEELVPFIQKTLTHYKLPPALLEAEVTESMTMEDR 680 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899 E S+ +L L ++GIS+++DDFGT S LSYL P +K + S + K I Sbjct: 681 EHSKKVLTALTELGISVSIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDLQLHPKSAQIT 740 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +II M + ++A+ + + K L G D++Q + + PL I +LL E Sbjct: 741 GAIIAMGHQLSLLVVAEGVETAMQKKLLDEKGYDFLQGFYFSRPLPPEEIEELLHE 796 >gi|158338315|ref|YP_001519492.1| diguanylate cyclase/phosphodiesterase with response regulator [Acaryochloris marina MBIC11017] gi|158308556|gb|ABW30173.1| diguanylate cyclase/phosphodiesterase with response regulator, putative [Acaryochloris marina MBIC11017] Length = 636 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 129/446 (28%), Positives = 229/446 (51%), Gaps = 6/446 (1%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +I E++K + + A D LT +PNR FL L + + + ++ +D D++ Sbjct: 188 QEIAEREKVQQQLKHMAMHDPLTDLPNRTLFLTCLEETIQDTQKQTDQSFALLFLDCDRF 247 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG VGD LV++ +R + +LARL G+ F I+L + +N + + A A Sbjct: 248 KSINDSLGHLVGDQFLVAIAKRFQRCVGDQ-LLARLGGDEFTILLKNVSNEQQAINIADA 306 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 +++S+ P ++ + E V+ASIG + +EML++A+ AMY AK G F Sbjct: 307 IQRSLLEPFHIGDNEFFVSASIGIVMSSPDYQQPTEMLRDADTAMYRAKAMGKARHIVFN 366 Query: 697 VSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 S + + ++ DL A+E E L Y PI+ L I G EAL++W P+ G +S Sbjct: 367 ASMHEDVQSSLQLETDLRRAIERQEFILNYQPIVALDTGMITGFEALVRWISPELGFVSP 426 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEG 813 +F+ +AE+ +I + ++L R + W+ P+ + +N++ K L E Sbjct: 427 GKFIPLAEDTGLIIPLGEWVLREACRQLNEWQSNNVTDIPLTMSVNLSVKQFSQPNLIET 486 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++++T +KL +ES +M N + + +L +LR I L++DDFGT S LSYL Sbjct: 487 IDQILAETQLPTQCLKLEITESAIMENSDSAAKILDQLRDRQIHLSIDDFGTGYSSLSYL 546 Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P +T+K + S + + +AI+++I+ +A+ + ++A+ I +L +G Sbjct: 547 HRFPVNTLKVDRSFVCRLDAADDNVAIVQAIVTLAQTMGMDVVAEGIETTEQQHQLENLG 606 Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957 C+Y Q P+ + ++L R Sbjct: 607 CEYGQGYLFCKPVNAETAGEMLANRN 632 >gi|283850872|ref|ZP_06368158.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. FW1012B] gi|283573795|gb|EFC21769.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. FW1012B] Length = 567 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 140/544 (25%), Positives = 257/544 (47%), Gaps = 12/544 (2%) Query: 422 DIVRDRVTTTPDIATILG-LASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGR 478 D V T+L + +G G + R L S +G R R Sbjct: 20 DTAGLVVAANASCLTLLNEIDAGDAIGRRFTGYCDRILSPTAAAAVREGLASVLGARTSR 79 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + + R ++ GD+ + DI+ +K+ E IL +AF D L Sbjct: 80 YTMDL----PCGAAQVPVWRALCVTPLAGDVPGALVSLTDISREKQLEEHILHDAFHDTL 135 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+ NR F++RL + + + V+ +D+D++K +N G GD +L+ + R Sbjct: 136 TGLFNRALFINRLDQAIRRQKRNPDALYAVLYLDMDRFKLVNKTFGHVTGDRLLMIIANR 195 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + +LL+ D LAR G+ F I++ + + A + + +A P L ++EI VT SI Sbjct: 196 LQKLLRDVDTLARFGGDEFAILIEDVAGMEETSSMAANVLRELAAPFRLKKQEIFVTCSI 255 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVE 716 G ++ ++L++A+ AMY +K GG+H F + ++ + L A+E Sbjct: 256 GVVLGSAVYEHPDQVLRDADNAMYSSKEHGGDHFTVFDAGMRVLTQRRMEMEMALRHALE 315 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 + E+ + Y PI+ L EI G+EAL +W P G I EF+ IAEE +I + +L Sbjct: 316 SGEITVHYQPIVSLRTGEITGVEALARWQRPGQGLIPPVEFIPIAEETGLINELGAMILR 375 Query: 777 RIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + R +++ + + + +NI+ + + + + A++++T PS +KL +ES Sbjct: 376 QACRRMVALAKASPDAARLTLSVNISGRQFKRPDFVDEVAAILAETGIDPSLVKLELTES 435 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895 V+M + + + + RL+ + + + +DDFGT S LSY+ PFD++K + S + E Sbjct: 436 VLMDDADEAISTIKRLKSLRLKVVIDDFGTGYSSLSYIQRFPFDSLKVDRSFVGNMNEAE 495 Query: 896 I--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I+R+II MA + ++A+ + + L+ + C+ Q + P+ + L+ Sbjct: 496 QNMEIVRTIIAMAHKLGLEVVAEGVELDEHRSALSDLRCESAQGFFFSKPVPGEELDALV 555 Query: 954 KERF 957 + Sbjct: 556 LRHW 559 >gi|117925926|ref|YP_866543.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117609682|gb|ABK45137.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 1118 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 136/559 (24%), Positives = 256/559 (45%), Gaps = 14/559 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + + + + + + G + M G + L + Sbjct: 413 EAHQSEGNARQVLSLADMAIISVNEEGIIIEVNRFASEMFGYSEQEMIGLSVHLL--LPP 470 Query: 459 NDRDNFRTILDSFVGY----RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + R + FV RR + E D F + I + + + Sbjct: 471 HFRKRHTLLYQGFVDGEVTERRMGQRGEVTGYRKDGTFFPVEASIAKYRCNEKWV--MVA 528 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 ++TE K++ E ++ A D LTG+PNR F +RLT+ L S + ++ I++D Sbjct: 529 SFRELTELKRAQEELVRRATHDPLTGLPNRTLFRERLTSALHRSHQNGE-NIGLLFINLD 587 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +++IND G +GD +L +++R+ ++ D + RL+G+ F I+ N ++ A Sbjct: 588 GFREINDSYGHEMGDLLLEEVSQRLITVVNQGDTVGRLAGDEFIILCEHIQNPEPLSSLA 647 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 +++ I PI + ++ VTASIG A S ++ +++++A+ AM K RG N E Sbjct: 648 VSVTNVIREPIVHDDLKLRVTASIGIALGHGSTHSADDLMRSADSAMNSVKERGRNGWEF 707 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F R+ I L A++N+E Y Y PI+ I G E L++W G I Sbjct: 708 FNPTLQEEAEKRLAISTGLRTAIDNNEFYARYQPIVDSESGMIRGAELLVRWRSSD-GEI 766 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S F+ +AE I I ++ E + W+ + +I IN++++ L + + E Sbjct: 767 SPGVFIPVAEMTGAIITIGRWVFEEGCKAERRWKAKFGEQAPYITINVSTRQLSEPLIIE 826 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 Q ++++T P+RI L +E+ +M + +R +L RL G+ + +DDFGT S L+ Sbjct: 827 EFQEILAETGADPTRIILEITETSLMADVSANREVLNRLATTGMRVAVDDFGTGYSSLAQ 886 Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L + +T+K + + G E+ ++ +I +AK+++ I+A+ + + + + Sbjct: 887 LSRLKVNTLKIDREFVLGLDEGEEGQIVVSAISRLAKSLKLKIVAEGVETDEQRNTIRSI 946 Query: 931 GCDYIQDSHVASPLGFNSI 949 GCD IQ + PL ++ Sbjct: 947 GCDLIQGYYYHPPLSEEAL 965 >gi|172037701|ref|YP_001804202.1| hypothetical protein cce_2788 [Cyanothece sp. ATCC 51142] gi|171699155|gb|ACB52136.1| hypothetical protein cce_2788 [Cyanothece sp. ATCC 51142] Length = 703 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 120/446 (26%), Positives = 231/446 (51%), Gaps = 6/446 (1%) Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 DIT++KK+ + +AF D LTG+PNR F ++ ++ + V+ I Sbjct: 248 IRSYIFDITQRKKAETELKYHAFHDGLTGLPNRTFFDQHISLMIKNCERYNK-SFAVLFI 306 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 DID +K IND LG +GD +L +R+ ++ D++ R G+ F ++ N +A Sbjct: 307 DIDSFKNINDTLGHTIGDCLLKCFAQRLTSQVRNSDLVCRWGGDEFVVLFSEIENPDAVA 366 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 F+ + + P+N+ +I + S+G A + + +LKNA+ A+Y K G NH Sbjct: 367 KFSERLLNTFEHPLNIEGHQIYLKCSVGIALYPEDGKDTEMLLKNADSALYRTKESGRNH 426 Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + ++ ++ L A++N EL L Y P I + ++ G+EAL++W++ K Sbjct: 427 YQFYDPEMSLEIAENFALETQLHEAIKNEELILHYQPQINIRTGQVYGVEALVRWNNSKL 486 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + ++F+ +AE+ +I + ++L+ + W+ PP+ + +N++++ L Sbjct: 487 GLVKPNKFIPLAEKTGLILPMGEWVLKTACQQNKKWQKMGL-PPVRVAVNLSAQQLQQPN 545 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L E ++ + P ++L +ES++M N + L +LR +G+ +++DDFGT S Sbjct: 546 LIETVENTLESVGLDPRWLELEVTESILMKNTTLASKTLHKLRDMGVYISMDDFGTGYSS 605 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL PFDT+K + S + + + I+I+ +I+ +++ +IA+ + + + L Sbjct: 606 LGYLKKFPFDTLKIDQSFVKELNQSPEDISIISAIMTLSRGFNMRVIAEGVENQNQLNLL 665 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 ++ C+ +Q + PL ILK L Sbjct: 666 QQLDCEEMQGYFFSHPLSPEEILKYL 691 >gi|326385333|ref|ZP_08206978.1| PAS:GGDEF domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] gi|326210139|gb|EGD60911.1| PAS:GGDEF domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] Length = 693 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 140/570 (24%), Positives = 249/570 (43%), Gaps = 13/570 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + ++ + + + I G + + + Sbjct: 124 ESKRLELELRDSEKKLRGLFELCPLGIALTTMDGAYLEFNEAFCRICGYSPDEI--RKLD 181 Query: 452 WLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + + + L S + G + E+ D + + + S+G Sbjct: 182 YWALTPRKYAEAEQIQLRSLLEFGHYGPYEKEY--IRKDGCCVPLRLTGVLLQGSDGK-S 238 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 I D+TEQ+KS E I +A D +TG+PNR+ F +RL + SA ++ R V+ Sbjct: 239 YIWSIIEDVTEQRKSQEAIWRHANFDMMTGLPNRRMFYERLERDILSSAVEER-RLAVIF 297 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D D +K+IND G GD+VL RR+ L+ D++ RLSG+ F +IL S + +I Sbjct: 298 LDFDNFKEINDAFGHDKGDEVLREAARRLKSHLRESDVIGRLSGDEFTLILRSFRDDQEI 357 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + + +++ P + +AS+G A + + E++++A+ AMY AK +G Sbjct: 358 DNVVQRLLATLSEPYRFGADILHASASVGIAVYPDDGAAADELIRHADQAMYEAKAQGQG 417 Query: 691 HVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F S R + +L A+ + L Y PI+ L E++ EAL++W+HP+ Sbjct: 418 RFSHFHRELQEEASHRSRMAMELRHALVEKQFRLYYQPIVALDSGEVLKAEALLRWEHPR 477 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G I +F+ +AE+ I AI ++ E A + W PPI + IN + + Sbjct: 478 LGLIGGGDFIPVAEQAGSIHAIGQWVFEEAANQVARWDRA-GCPPIQLGINRSPVEFRRP 536 Query: 809 E-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + + +++ SR + +E +++ R L +L +IG L LDDFGT Sbjct: 537 DNALDAWTTQLAQLGLCGSRFVVEITEGLLVEQTPVVRGQLEQLGRIGSGLALDDFGTGY 596 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL D +K + S + G + +A+ ++I MA+ + +IA+ I E Sbjct: 597 SSLSYLRKFDVDFLKIDRSFVQGLAPGSEDLALCEAMIVMAEKLGIKVIAEGIETEQQRD 656 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GC + Q P+ + + L + Sbjct: 657 LLAAAGCHFGQGYWFGRPMPAEAFTRRLLQ 686 >gi|303241210|ref|ZP_07327717.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus CD2] gi|302591221|gb|EFL60962.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus CD2] Length = 565 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 133/438 (30%), Positives = 230/438 (52%), Gaps = 8/438 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + KKS++ + A+ D LTG+PNR+ L+++ IL T +N++ + + +D+D +K +N Sbjct: 125 KLKKSMKELKKFAYYDFLTGLPNRRFMLEKIEDIL---KTSNNIKFSFLFLDLDNFKMVN 181 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D++G GD +L ++ + + DI+ RL G+ F I+L + + I + A ++ Sbjct: 182 DIMGHDYGDQLLKNIASELKNCMDESDIVGRLGGDEFLILLSNIYSKDTIENKAKSIMNL 241 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + N+ +E +TASIG + + KNA+ AMY AK +G N F Sbjct: 242 FSRQWNICGKEFFITASIGMVIYPFDGTDLQTLYKNADTAMYQAKEKGKNCFLFFCQDMN 301 Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 +++ ++ + A++N E + Y P I + EI G+EAL++W+HP G I ++F+ Sbjct: 302 DKVSEKMEMENKIRKAIKNREFVVYYQPQIDIETMEIKGVEALVRWNHPTEGIIQPAKFI 361 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAE I I+ F++ + + +W I I +N+ SKD L G+ +I Sbjct: 362 PIAEASGQIVEIDEFVMRTACKQLKAWIASGIKT-ITISVNLTSKDFLHENFTVGLNEII 420 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 T + ++L +ES+VM + + + +L L+ IG+ ++LDDFGT S L+YL +P Sbjct: 421 KDTGIEANYLELEITESLVMKDLDVALGILKNLKAIGVKMSLDDFGTGYSSLNYLKKLPI 480 Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 DT+K + S M TE AI SII +A + T+IA+ I + ++ + CD Q Sbjct: 481 DTIKIDKSFMNEITEDSKEEAIAESIIALAHKMNLTVIAEGIETKKQLEFIKEHKCDKAQ 540 Query: 937 DSHVASPLGFNSILKLLK 954 + + P+ I KLL Sbjct: 541 GYYFSKPIPVEEIEKLLS 558 >gi|325527394|gb|EGD04745.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia sp. TJI49] Length = 749 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 132/568 (23%), Positives = 248/568 (43%), Gaps = 11/568 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-L 453 +Q + E L V + + V + P ++ + + + L Sbjct: 181 RIAQQLARSEEHHRLVVNSLNEGILVVSRDGVVVASNPSANRMMRVKGDLVGRRLSTVIL 240 Query: 454 PYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDIL 510 +H + + L Y AD W+ P+ + Sbjct: 241 RKLHEDGTPIAPEDWPSRRALESATPMLGYTVGFGLADGDIIWVRGNAVPIVKPGDTQAE 300 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPTVM 569 + NDI +++ + + A +D LTG+ NR+ DR+ + R ++ Sbjct: 301 SVLVSFNDIGPVREAQQQLRYLATRDALTGLYNRRWLADRMREMFGRRDAASGPARIAIL 360 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ID+ +KK+ND G GD +L S+ R+ L R+ G+ F I++ ++ + Sbjct: 361 FIDLVGFKKVNDTAGHDAGDALLRSVAMRLEGCAGGRHALTRVGGDEFVILVDDCDDPER 420 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +A A + +IA P + E + SIG + ++ +++NA+ AMY AK RG Sbjct: 421 LAVLARQVIDAIAKPFAVANNEYWLGVSIGISISPRDGDDAATLMRNADSAMYDAKQRGR 480 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 NH F + I++ L A+ ++ L L Y P++ VG EAL++W P Sbjct: 481 NHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARSGRTVGAEALLRWTSP 540 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ + D Sbjct: 541 ELGPLSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQFHD 599 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L E + +++T P+ ++L +E ++M + + +L L + + +++DDFGT Sbjct: 600 -GLVESVDRCLAQTRLDPAALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDDFGTGY 658 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + E Sbjct: 659 SSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGMKVTAEGVETEAQSW 718 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 L ++GCD Q + PL + L Sbjct: 719 FLQQIGCDMQQGYLFSRPLDPADYARRL 746 >gi|218530951|ref|YP_002421767.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] gi|218523254|gb|ACK83839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] Length = 954 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 129/570 (22%), Positives = 246/570 (43%), Gaps = 23/570 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + A+ + +D + + G+ + ++ + Sbjct: 391 EDQLKRSNAQLDAALSNMLQGLCLYDAEGGLLVYNRRFCDMFGVDAAALRP-------GM 443 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL---RYI 513 I D ++ E ++ + IR + +I Sbjct: 444 SIRDVARLVEASSDSGRAIDLLVEQEALLQRGLSASLCCPIRTDCIVALKQQPTAEGGWI 503 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 D+T++ ++ I+ A +D LTG+ NR F +RL + +D+ Sbjct: 504 ATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAARLDEGAGAGFATLCLDL 563 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----SLK 629 D++K++ND LG +GD +L S+ R+ L+ D++ARL G+ F I+ Sbjct: 564 DRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHARRD 623 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + + P L +TV SIG + + ++LK+A+LA+Y AK G Sbjct: 624 ASALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATGR 683 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 F R ++ DL AV N E LV+ PI++L + I EAL++W HP Sbjct: 684 GCWAFFDEEMDVELRKRRALESDLKKAVGNGEFELVFQPIVKLDRQRIASCEALLRWRHP 743 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G +S ++F+ +AEE I I ++L + + +W I + +N+++ + Sbjct: 744 ERGYVSPADFIPLAEETGTIGEIGEWVLRKACSEAATWPS-----NIRVAVNVSAAQFKN 798 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + + ++ + R++L +ESV++ + + L L+++G+ + +DDFGT Sbjct: 799 AAVVRAVMDALAASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGTGF 858 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL PFD +K + S + I+RS++ + +++ T A+ I E ++ Sbjct: 859 SSLSYLQSFPFDKIKIDQSFVRNLAAPGNSRLIVRSVVGLGRSLGITTTAEGIETEAQLE 918 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +L GCD Q + P+ +I +L+ Sbjct: 919 QLRLEGCDEGQGYLFSRPVPSATIRELVTA 948 >gi|264680436|ref|YP_003280346.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni CNB-2] gi|262210952|gb|ACY35050.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni CNB-2] Length = 666 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 134/588 (22%), Positives = 253/588 (43%), Gaps = 16/588 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ ++ V +Q I ER +A ++ Sbjct: 90 VLKGVVALMTDVSHHHLATQQIRDSEERMR-KFAAITTEAIVMHRDGIITDGNDALARLV 148 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + G + G L Y+ R L + R RL+ + + Q + I Sbjct: 149 GYSLGELRGTP--VLDYVAPEAR---LRALQNMRSEREDRLESV--IMHKNGQLIPVEIE 201 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 M I + D+T ++ + + D LT +PNR L + + Sbjct: 202 ACTMPGEKDR--HRIVLLRDLTASLQTRQHMDYLTQHDLLTHLPNRARLNHLLADAIARA 259 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 A + R V+ +D+D++K +ND L GD +L L +R+ + DI+AR + F Sbjct: 260 A-GEQSRLAVLSLDLDQFKAVNDSLSHQAGDLLLCELAKRLRSTVGAQDIVARTGSDDFV 318 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L L+ +R + P + ++ ++ S+G A + + +L NAE Sbjct: 319 VVLPDNPGLLETEALLTRLRATAEAPYLIEGTQLVISVSVGIAMYPKDGKCPASLLSNAE 378 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AM AK RG + + + + M+ ++ L AVE E L Y P + E+ Sbjct: 379 AAMQMAKSRGRSFSQFYTPALESRATRMLMQEQMLRNAVERGEFELHYQPQTLMQTGELS 438 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP G +S EF+ AE +I A++ ++L + R +W+ Q P I + Sbjct: 439 GFEALVRWKHPHRGLVSPDEFIGFAENRGLIAAVDRWVLYQACRQARAWQQQ-GFPAIPV 497 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++++ ++ + + ++ T + + +E+ +M + + + L L+ +G+ Sbjct: 498 AVNLSAQEFRQRDVVKEVAQALADTGLDACYLHIEVTETTLMLSGNQMQQTLHALKALGV 557 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L +DDFGT S L+YL P D +K + S +T AI+ +I+ M +++ I+ Sbjct: 558 GLAIDDFGTGYSSLAYLRKHPIDRLKIDRSFVTDLPHNPDAAAIVNAIVQMGRSLHLEIL 617 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 A+ + ++ L MGC +Q V++PL + + L++ Sbjct: 618 AEGVESTEQLQLLREMGCAMMQGFLVSAPLSAEQASAWMSQHCQLLQR 665 >gi|322420149|ref|YP_004199372.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320126536|gb|ADW14096.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] Length = 773 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 123/450 (27%), Positives = 222/450 (49%), Gaps = 6/450 (1%) Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 ++ I + E K+ E + A D LT +PNR DR++ L + Sbjct: 184 NNLAHGILSLRIMAEHKRYEEQLAYQATHDPLTALPNRNLLADRISQALAWAQRHRRW-I 242 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ +D+D +K +ND LG GD +L + R+ E ++ D LA G++F ++L Sbjct: 243 AVLFVDLDFFKFVNDSLGHGKGDQLLKMVAERLSERVRQVDTLAHQGGDKFVVVLTDLRG 302 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + +R++I++P + +E+ ++ SIG + + ++KNAE+AMY AK Sbjct: 303 NEEADRAVHVIREAISLPFLMDGQELVISCSIGITVYPKDGEDAQTLVKNAEVAMYRAKE 362 Query: 687 RGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 +G N + + + R+ +++ L A+EN E L Y P L + G+E LI+W Sbjct: 363 QGRNCFRYYTRELNERVASRMSMEKHLRKALENEEFELWYQPQADLNTGRLSGMEGLIRW 422 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 + + G + F+ +AEE +I I +++ W+D P+ + +N++ + Sbjct: 423 RNAELGMVQPGSFIPLAEETGLIVQIGEWVVRTACLQNRRWQDAGL-SPLTVAVNLSPRQ 481 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 D EL + ++ +T P + L ES+VM + E + +L L+ +G+ L++DDFG Sbjct: 482 FRDRELTGVIAGVLRETGLDPRYLGLEIVESMVMHDVESAAAMLNELKALGVKLSMDDFG 541 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL PF +K + S + AI +SII MA N+ +++A+ + E Sbjct: 542 TGYSSLSYLKRFPFAKLKIDLSFVRDIMTDPGSAAIAKSIISMAHNLNLSVVAEGVETEG 601 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++ L GC+ IQ +++ PL + Sbjct: 602 QLEFLRAHGCNEIQGYYLSRPLPAAEFEGM 631 >gi|228940824|ref|ZP_04103384.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973744|ref|ZP_04134322.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980300|ref|ZP_04140611.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228779405|gb|EEM27661.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228785990|gb|EEM33991.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818838|gb|EEM64903.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 883 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 159/808 (19%), Positives = 323/808 (39%), Gaps = 64/808 (7%) Query: 203 AIFLTIFYMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261 ++ + + W +I L+ + L L + I Sbjct: 81 VFYMFFLFFCLIAFSYKILKECNKWEKAFFICDICIVLTSIFTLE--WYLFNQPNLNIFA 138 Query: 262 SSSLIIFLFMYLHWNRWHAKVG--------------YITFSGIACIAILFCMSFYYPMVT 307 S +FL + + I + ++ Y + Sbjct: 139 LSLGDVFLSFLYPIADLLFLLLGVSLFFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLN 198 Query: 308 ASIARITLASIVLYYTYFIIYHGMKG------YERAVLLI---------PAWILIFIWFI 352 ++ T+ + L Y I+ + G I I Sbjct: 199 NHLSTETITLLRLLYRIPILLIAIAGSISEDHNSHKNYFIVNPIIGKKALVVFPYLAVAI 258 Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVL 391 + + ++ + + + ++I +Q Sbjct: 259 LIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTVRTS 318 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + S+ + ++ D ++ D+ + + +LG + + G Sbjct: 319 DLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGTFLNVNKAGSVLLGAPTDELLGETC- 377 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 I D+ L+ LQ + D +++ + I P+ +G I Sbjct: 378 -FSIILDEDKHKLALALEKVKQQESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISG 433 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DIT KK E I AF D +T I NR F +L ++ + ++ ++ + Sbjct: 434 SYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYL 492 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG + GD +L + +R L L+R+ G+ F II+ + + + Sbjct: 493 DLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLF 552 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGG 689 + + + + E ++T++ SIG A + S I ++ +LKNA +AMY AK Sbjct: 553 QLCNQLFECMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNS 612 Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ Sbjct: 613 VSIYDDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPEL 672 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS EF+ IAEE I +I + LE+ + + W + I +N+++K+ + Sbjct: 673 GIISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQED 731 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + + ++ T S + L +E + M + + + L L+ +GI +++DDFGT S Sbjct: 732 FVKSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSS 791 Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + + + + + I+++II +A + ++IA+ + + + L Sbjct: 792 LAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFL 851 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C +IQ + + P+ ++ +LL+ Sbjct: 852 QKNKCQFIQGYYYSKPIHIHAFTELLEN 879 >gi|313202471|ref|YP_004041129.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441787|gb|ADQ85893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 936 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 143/573 (24%), Positives = 262/573 (45%), Gaps = 15/573 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + V I + + D + +D R+ LG+ ++ Sbjct: 364 ARDVTEAKLNELEIVHREIELRTLIDNTPDAITRFDRDARRIFVNNRKLEKLGMERDAIL 423 Query: 447 GPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + + + ILD + G ++ + + IRI P Sbjct: 424 GKKPSE----YPGGTVFSQYEQKILDVVATGQPGFMEMT--GTTPEGETWHSHIRIVPEL 477 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G + + + DITE E + A+ D+LT +PNR F DR++ +L + Sbjct: 478 DEQGQVQHILAVERDITELVAYRERVYYLAYYDSLTNLPNRTLFNDRISQVLMEAQWSKQ 537 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + VMV+D+D +K IND LG VGD++L + R+ ++ D +AR+ G+ F I+L Sbjct: 538 -KFGVMVLDLDHFKSINDSLGHLVGDELLCATADRLQMAIRTYDTVARMGGDEFAILLPD 596 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +A A + + IA P ++ +E+ ++ S+G A++ + K A+ AMYH Sbjct: 597 IRKPDDLATIANKIVQVIAQPFHIQGKELFISTSVGIATYPLDGEDQEALYKCADAAMYH 656 Query: 684 AKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G ++ + + S S+ + I L A+ N+E L + P + L+ +++G EAL Sbjct: 657 AKSMGRSNYQFYSHDLGSKASEYIAIGTSLRQALRNNEFVLHFQPQMDLLTGKLLGAEAL 716 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+HP G + +F+ +AEE +I I ++LE I+ N + + IN++ Sbjct: 717 LRWNHPLRGLLPPDDFIGVAEESGLIVEIGEWVLENAFNAIVELNRLRND-KLTVAINLS 775 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ L N+L + L+ KT P+ +KL ES+++ +L + +GI++ +D Sbjct: 776 ARQFLYNDLLAAVSRLLEKTGCLPAWVKLEIRESLLLEENPDVMAVLNAFKAMGITIAID 835 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DF T S LSYLG P VK + M + R ++ +II +A+ + ++A+ + Sbjct: 836 DFCTGYSALSYLGQFPVRQVKIDRLFMQDVVQQQDRAELVNAIIRIAQALHLELVAEGVE 895 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + L GC Q + P+ + +L Sbjct: 896 SASQLAFLREKGCTMAQGFFLGKPMLLEELKQL 928 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 7/147 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +++ + + + + V + DI +D R+ + + G+ Sbjct: 106 NLALVRDISTRKNLQDQLEASEAKFRDLVEHAPDIFIRYDRDCRRIFISQAYEEVYGIPL 165 Query: 443 GSMHG--PIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 G P W + + + + E + A D Q+ ++I Sbjct: 166 TQALGKKPTEVWGKAWTTPAEYERQLQEIMRSRKPG----NIELQWVADDGQYVCKSLQI 221 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSL 526 P ++NGD++ + I DI++++ + Sbjct: 222 APEFDANGDVVSVLSITRDISQRRAAE 248 Score = 46.1 bits (108), Expect = 0.027, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 5/150 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + + + E Q + +VW D + A A Sbjct: 235 LSITRDISQRRAAENALRLRDEYQRALIDNFPFMVWLKDRQSHLLAANTAYAE---WAQA 291 Query: 444 SMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + + + + D V +V+ + WM I P+ Sbjct: 292 ASTRDVDGKTDFDLFPEEIAKAHIASDQVVLESGKPWHAVDQVKDQHGRQRWMEIYKSPV 351 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532 N ++ +G A D+TE K + I+ Sbjct: 352 R-VNDELKGIVGYARDVTEAKLNELEIVHR 380 Score = 42.2 bits (98), Expect = 0.47, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 8/125 (6%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFR 465 S A+ + ++ D + LG + + I D+ +R Sbjct: 7 LSFALNKVTESIFLIDASSRIRYVNQECCRTLGYSQQDLLAMRVAD---IDPTVDQMVWR 63 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + L +E R + + I G + + DI+ +K Sbjct: 64 DHWQALTAEI--SLTFESRHLTRQGKLLPVEINAN-YFEYAGTAYN-LALVRDISTRKNL 119 Query: 526 LEGIL 530 + + Sbjct: 120 QDQLE 124 >gi|269127758|ref|YP_003301128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermomonospora curvata DSM 43183] gi|268312716|gb|ACY99090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermomonospora curvata DSM 43183] Length = 943 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 155/775 (20%), Positives = 305/775 (39%), Gaps = 46/775 (5%) Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSG--ELLIWRACSEIALSSSLIIFLFMYLHWNRW 278 +A + + +FG L L L + I L + F+ R Sbjct: 163 YVCVAALFVFGWVAEFGTLYHLSGESPAEFVLELLYPLVGIVLLWGALPFVLGAARPYRP 222 Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASI-ARITLASIVLYYTYFIIYHG------- 330 Y+ + ++ L + Sbjct: 223 GVWTAYLALTAFVIADVVSMAVRLRGDAAPVGDIGDAARVAGLLALGLAPWITPPPRGDE 282 Query: 331 --------MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND---IIQPALVGGLVLIV 379 G R ++ P + L +L+ G ++V Sbjct: 283 PAAEDAEFEGGLPRGRMIGPGIAPAAVGAAAAIFVAGHSLTGSRGMEPVVSLIAGSAVLV 342 Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 +L +Q + + + E D+V D+ + Sbjct: 343 MLARLAGLQR--ENDGLRRAVGAGEEHFRALAESINDLVLICDLNGVVQYVSDKAHRTYE 400 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G R+ +IH D + + F+ R L+ RVRAAD + + Sbjct: 401 HVPDDLLG--RSVTEFIHPEDLPHVEEVYGEFLTTDRPALRISCRVRAADGTWLPTESTV 458 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 ++S R + D++EQ + F D LTG+PNR F +R+ ++ Sbjct: 459 SRYTSS-----RVLITTRDLSEQAALQRQVTHLTFHDGLTGLPNRAYFEERVHEVVGREP 513 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + + V+ +D+D + +ND G A GD VL RR+ ++ D +AR G+ F + Sbjct: 514 SPET--VAVLFVDLDGFTAVNDSAGHAAGDQVLAQAARRLRSAVQADDTVARWGGDEFAV 571 Query: 620 ILISENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTS------SKITSSE 672 ++ + + + I + A + + + A P ERE+ ++ASIG A + + +E Sbjct: 572 LVENSDEARSIVELAERLLRVLTAEPYRAGEREVVLSASIGIAFADDPPSGDSERRSGAE 631 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRL 730 +++N +LAM AK GG VE + ++ DL A+ + + + P++ L Sbjct: 632 LIRNGDLAMARAKELGGGRVEVYAAHMHTDVVRRLELGADLQRALAEEQFAVEFQPVVEL 691 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 + G+EAL++W ++ +F+ AEE ++ + ++L + R + WR ++ Sbjct: 692 DTSRVTGVEALVRWWRGS-ESVPPQDFIRPAEESGLMITLGDWVLRQACRQVARWRAESW 750 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + +N ++ + E + ++ +T P + + +E+V++ + ++ L Sbjct: 751 QVD--LSVNFTARQIAAPRFVESVAQVLEETGLPPQALTVEVTEAVLVEDAGQTVERLSA 808 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 LR++G+ L +DDFGT + L++LG +P D +K + S + G E R + R+I+ + + Sbjct: 809 LRELGVRLAIDDFGTGYASLAHLGRLPVDVIKIDPSFVAGLGRDETRTLLTRAIVRLGHD 868 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + T++A+ I ++ L +M C Q VA P+ LL+ V++T Sbjct: 869 LGLTVVAEGIERPEQLELLRQMNCPRGQGFLVARPMAPGPAESLLRTNLTTVQDT 923 >gi|206601940|gb|EDZ38422.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum sp. Group II '5-way CG'] Length = 702 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 154/731 (21%), Positives = 293/731 (40%), Gaps = 66/731 (9%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWN-----RWHAKVGYITFSGIACIAILFC 298 + L+ + + + F + W GI + + Sbjct: 5 PSYNFWLVSLSVFIAVTAAYTSFSFASRITSTSGKIRLLWLGGGSVAMGVGIWSMHFIGM 64 Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 ++F P R TL S+++ M R + M Sbjct: 65 LAFRMPFPVHYDVRTTLLSLLMAIVVSGFALRMTSLPRIGPANLLMAGTLMGLGIGAMHY 124 Query: 359 TKRLDNDI---IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 T + ++ I+ + I+I + + + + S +D ++ L+ L G Sbjct: 125 TGMMAMEMPMAIRYDPFLVFLSILIAVSASTAALRIVSTLRSDVAVADMPKKFLSALIMG 184 Query: 416 DIVWDWDIVRDRVTTTPDIATI-LGLASGSMHGPIRNWLPY------IHINDRDNFRTIL 468 + T A L ++ + WL I +++ Sbjct: 185 AAI------SGMHYTGMAAARFPLRMSGTPLKNSSDAWLAVTIGLASFMILAIGLILSLV 238 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 DS + R +G K + E Sbjct: 239 DSHLATRTA---------------------------------GLVGSL------KAANEK 259 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LT +PNR DR+ + + D +V +D+D++K IND LG + G Sbjct: 260 LHYLALHDGLTRLPNRTLLEDRVDQAIRHARGVDGA-FSVFFLDVDRFKPINDSLGHSTG 318 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D VL + RR+ + D +AR+ G+ F I+ + + K+ + A +R +A + + Sbjct: 319 DKVLQQMARRLSGTVGPEDTVARIGGDEFVIVFPEQKDPGKVHEIARKIRDCVAENMEVD 378 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708 + ++VT SIG + + T +L +A+ AMY+AK +G ++ + S + I+ Sbjct: 379 GQSLSVTTSIGISLFPHDGTTFRTLLASADSAMYYAKSKGSGQIQFYSGELNDSAALRIE 438 Query: 709 --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 DL +E E L Y P + L E+ +EAL++W+HP+ G + F+ AEE + Sbjct: 439 MENDLRRGIEKEEFVLYYQPKVTLATGEVESVEALVRWNHPEKGILPPHYFIPRAEETGL 498 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + ++++R R+ + W+ + + +N+++ ++ +L + + + + P Sbjct: 499 IIPLGRWIMDRACREAVIWQQA-GFSRLRVAVNLSALQFINQDLMKEILDALESSGLPPE 557 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ES++M +PE + L +R+ G+ + +DDFGT S SYL P D +K + S Sbjct: 558 CLELEITESLLMEDPEGAMRTLSGIRQKGVHVAIDDFGTGYSSFSYLKKFPLDRLKIDRS 617 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 +T AI+R+II + N+ +IA+ + + ++ L M CD Q + PL Sbjct: 618 FITDICDNPNDAAIVRTIITLGHNLNLKVIAEGVESQAQLEMLKAMECDAYQGFFNSRPL 677 Query: 945 GFNSILKLLKE 955 + + LKE Sbjct: 678 PPGELAERLKE 688 >gi|254519477|ref|ZP_05131533.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp. 7_2_43FAA] gi|226913226|gb|EEH98427.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp. 7_2_43FAA] Length = 743 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 149/553 (26%), Positives = 276/553 (49%), Gaps = 11/553 (1%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRT 466 LAV GS DI + W++ ++ ++ I L + + ++W +I +D D + Sbjct: 195 RLAVEGSKDIAFWWNVNQNIISIDYSIREYLEIKGEGDVLISDKSWKKFILEDDIDLYNK 254 Query: 467 ILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 ++ + ++ ++R+ + DN+ W+ + + NGD L G +DIT++K+ Sbjct: 255 KINKVLNSKKDEFYSIDYRILSKDNKVVWLQSKGKKTLEKNGD-LFIHGAFSDITDRKEK 313 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 I +F D +T IPNR+ F+ +T ++ N + + ID+D +K +ND G Sbjct: 314 EIEINYLSFNDEVTRIPNRRFFVREVTNHINN---YPNEKIAFIFIDLDNFKYVNDTYGH 370 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD +L+ + I + + AR G+ F I+ + +I + K ++ PI Sbjct: 371 DAGDLLLIEFAKIIKNMKIKDSLFARYGGDEFIIVQYNIQEKNQIKYILDNIIKKLSNPI 430 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 + ++EI T SIG + + +LK A++AMY AK G N E F + Sbjct: 431 IINDKEIFCTLSIGVSVYPIDGGDMPILLKRADMAMYLAKVNGKNRYEFFDIKILEILNR 490 Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 I++ L +AV+ SE+ ++Y P I++ EE++G E+L++W+ G +S SEF+ IAE Sbjct: 491 EFDIEKGLRVAVDKSEIKMLYQPKIKVDTEEVIGFESLVRWNSKSLGIVSPSEFIPIAES 550 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I +++ R N + IN++ + D ++ + + Sbjct: 551 SGLIIPIGKYIINESFRRCKELT-LKNNKKFKMAINLSEVQIRDEDIVSFISESLKFYDL 609 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 S I+ +ES++M + ER+ L +L+K+G+SL LDDFGT S LSYL +P D +K Sbjct: 610 SAEYIEFEITESIIMKSAERNISTLEKLKKLGVSLALDDFGTGYSSLSYLRTLPIDVLKI 669 Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + G EK I+ SI+ ++ + ++A+ + + + L R+ CD IQ + + Sbjct: 670 DKSFIDGIVIEEKSEYIINSIVELSHYLSLLVVAEGVETKEQLDFLKRISCDVIQGYYFS 729 Query: 942 SPLGFNSILKLLK 954 P+ F+ ++++ Sbjct: 730 RPVEFDEAIRMIS 742 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 73/182 (40%), Gaps = 10/182 (5%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 I IF + + + DN +++ ++L++++ + + ++ S Sbjct: 9 IFIFASLCLIILIVKSNFDNVTSLLSIMLFIILLLMIRLVYINKKYEKLYKLAE---SSK 65 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 R +A+ +W+W+ +++ + I IL + W +I ++R++ Sbjct: 66 RRYRMAIDALECAIWEWNSENNKLYMSKKIKDILKINKD--IESFDEWFSFIVEDEREDI 123 Query: 465 RTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGDILRYIGIANDITEQ 522 + +++ + R E + + + ++ + N ++ G+ DITE+ Sbjct: 124 KIFIENIIHNRILDNFILESSIVDFSGEKLLLKVQGNGKVRN---NVFYLSGLIVDITER 180 Query: 523 KK 524 K+ Sbjct: 181 KR 182 >gi|119898518|ref|YP_933731.1| GGDEF/EAL/PAS-domain-containing protein [Azoarcus sp. BH72] gi|119670931|emb|CAL94844.1| GGDEF/EAL/PAS-domain containing protein [Azoarcus sp. BH72] Length = 889 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 146/718 (20%), Positives = 298/718 (41%), Gaps = 27/718 (3%) Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 R + + L++ Y R + + + A L ++ P + R Sbjct: 183 RLIGLLLTAMMLVVIGLRY----RASVRQRHALLRLVDSEARLRAFAYAMPDTAFILDRE 238 Query: 314 TLAS-IVLYYTYFIIYHGMK--GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 + Y + G F+ + + + Sbjct: 239 GRYIEVFGMGRSLTPYGHERMVGATVFDYFPRPQAENFVGVVRDALT-RGEVVRYEYSLR 297 Query: 371 LVGGLVLIVILI----GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 L GG + + V + ++A+ G+ D V D+ Sbjct: 298 LAGGTRWFEARVAPVDSMQRVVWVSRDVTERRRAEERIRLHAVALEGTRDGVMVTDLHGR 357 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + +I G + G L H D +R I + + G Q E Sbjct: 358 IQSVNRAFTSITGYSEEEAIGKTPGLLKSGRH--DPSFYRGIWSALLSG--GYWQGEIWN 413 Query: 486 RAADNQFHWMIIRIRPMSNSNGDIL-RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 R + + + I + G Y+ + DI++ ++ E + A D LT +PNR Sbjct: 414 RRRNGEVAPHWMSISAV-GEQGHPYEHYVAVFTDISQLRQFEERVSHLANYDLLTDLPNR 472 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 D L T + + + + VM++D+D++K +ND LG A+GD++L + R+ + L+ Sbjct: 473 LRMSDCLETAIAAARRS-HTQVGVMLVDLDRFKNVNDALGHALGDELLAGVAERLRKHLR 531 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASW 663 D L R G+ F ++L ++ + A A M ++ P + +E+ + ASIG + + Sbjct: 532 HGDTLGRYGGDEFLLVLEQLRDAGEAAAVARTMNSALDQPFLMRGGQELYIKASIGISLY 591 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELY 721 T++E++K+A+ AMY AK G N ++ ++R+ ++ L A++ S Sbjct: 592 PEDGDTAAELIKDADAAMYEAKRLGRNTFRYYQEDLTRTANERLALESRLRRALDESMFE 651 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 + Y P++ L E++G EAL++ I ++F+ + EE MI + ++ + R Sbjct: 652 MYYQPLVALNSGEVLGAEALVRLRPDGGPRIGPADFIPVLEESGMIAELGRWVQREVCRQ 711 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 +W D + + +N++++++ + + ++ ++++T + ++++ +ES +M Sbjct: 712 GRAWLDAGYDFQL-LTLNLSAEEVRRGGVVDNLREVLAETGFPAEKLEVEITESGLMQRG 770 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899 + L L+ +G+ L++DDFGT S LSYL P + +K + +T + + + Sbjct: 771 SEALDFLYELKGLGVRLSIDDFGTGYSSLSYLKLFPVNKLKIDRGFITDIPEDQNDVQLT 830 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKER 956 +II +A+N+ ++A+ + E L GCD Q + P+ + L R Sbjct: 831 TTIIALARNLGLDVLAEGVETEAQRTFLAEKGCDAYQGYLCSPPVEAAVFQERFLHGR 888 >gi|254563188|ref|YP_003070283.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254270466|emb|CAX26466.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with PAS/PAC sensor [Methylobacterium extorquens DM4] Length = 700 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 143/575 (24%), Positives = 259/575 (45%), Gaps = 23/575 (4%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-- 449 A + R A+ + +D + V I GL ++H + Sbjct: 124 ALVEAHAELSEQNRRFDAALENMTHGLCMFDSEQRLVVWNRRYLGIFGLPDDAVHVGMGQ 183 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNS 505 R + + +D+ R L + AD + +I R PM++ Sbjct: 184 RAIIEMLVARGCYKRGATVDAISEGTRTSLSGDGSKSVLRELADGRVIAVIHR--PMADG 241 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G ++ DITE++++ I+ A D LT +PNR + L TD Sbjct: 242 GG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTRLREVGAEWLAALRTDAEAP 297 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND G AVGD +L ++ R+ ++ D++ARL G+ F +L Sbjct: 298 LAVLCLDLDRFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFA-VLSRVE 356 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHA 684 ++ A A + +++A P L + + S G A +LK A+LA+Y A Sbjct: 357 DAAAAAALAERLIETVAAPYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEA 416 Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G V F +R+ ++ +L A+ L Y P++ L D I G+EALI Sbjct: 417 KTEGRGTVRLFEPQMDETLRERLGLERELREALAQDRFELHYQPLVDLSDNRITGMEALI 476 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G +S + F+ +AEE +I I ++L + RD + W + I + +N++ Sbjct: 477 RWHHPERGLVSPAVFIPLAEETGLIVPIGEWVLRQACRDAVDWPGE-----ISVAVNVSP 531 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + + ++ + SR++L +E+V++ + E + L LRK+G+ +++DD Sbjct: 532 LQLRHRGFIQSVLGALAASGLKASRLELEITENVLLDDTEANLETLHTLRKLGVRISMDD 591 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920 FGT S +SYL PFD +K + S + + AI+R+I+ + ++ T + + + Sbjct: 592 FGTGYSSISYLRRFPFDKIKIDRSFVRDCAAQSEAGAIIRAIVSLGASLGITTLVEGVET 651 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E + + G +Q + P + I LL+ Sbjct: 652 EPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 686 Score = 76.9 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 19/159 (11%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E +A D +W D + +LG + + G R+ L Sbjct: 3 LNDLEELARIAF----DWLWATDAEDRFSYVSSGAERVLGRSPADLIGLTRSALVC---E 55 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + RR + R D W I RP + GD L Y G+ +D+ Sbjct: 56 GEGESLAVYRETITARRPFRDLTYVYRHPDGTPRWFEISGRPHLSPEGDFLGYHGVGSDV 115 Query: 520 TEQKK----SLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 TEQ + +E + Q NR+ F L + Sbjct: 116 TEQHRTRCALVEAHAELSEQ-------NRR-FDAALENM 146 >gi|157692015|ref|YP_001486477.1| cell signaling protein [Bacillus pumilus SAFR-032] gi|157680773|gb|ABV61917.1| possible cell signaling protein [Bacillus pumilus SAFR-032] Length = 807 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 158/811 (19%), Positives = 326/811 (40%), Gaps = 57/811 (7%) Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVN-------RSSMLIPTFAMAWVVLGYISIDFG 237 S+ + + V + LA + + + + + A+ + + G Sbjct: 5 TGSYNGWLVFLSIVLAALASYSALQLASRVAQSSGAKKKVWLIVGALIMGMGIWSMHFIG 64 Query: 238 FLSKLVNLPSGELLIWRACSEIALSS---SLIIFLFMY---LHWNRWHA----KVGYITF 287 ++ ++ +G L+S SLI F L R I Sbjct: 65 MMA--FHVRAGITYETPLLILSILASFVGSLIAFTICIQEQLSTRRLLISSITMGSAICS 122 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 + + +S Y V ++ + + G ++ L+ + Sbjct: 123 MHYLGMESMANVSISYDPVLFFLSFFIATIASFFSLHLFFRLHRSGKKQEDHLLKIVGAL 182 Query: 348 FIWFIGLWMAITKRLDND-------------------IIQPALVGGLVLIVILIGFTVIQ 388 + M T + +G + LIV + Sbjct: 183 VMGGAVAGMHYTGMAASTMFFHSDGQSSGGGSLELSPFSLSIFIGLMTLIVQTLMIFGAY 242 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + + +R + + D + + R ++ IL + + + Sbjct: 243 IDHRIMKQADKLKENEQRFQSLIKHNIDGIIVLSVNRKVLSANDSGKQILKMCNSWIGDD 302 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + + + D + + F+ + + E ++AAD +F++ + P+ N Sbjct: 303 VSQY---VMPTD------MWEEFISESKKAITREAELKAAD-RFYYYHVTYIPVH-VNNS 351 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + D+T+Q+ + + I A D LT +PNR+ ++ L+ +L + + V Sbjct: 352 LDSIYLVLKDLTQQRIAEKEIHVMAHYDALTELPNRRHAINHLSDVLS-AQEETGTSTAV 410 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNS 627 + +D++++K IND LG +GD +L + R+ + L +ARL G+ F +I +++ Sbjct: 411 LFLDLNRFKIINDALGHNIGDLLLKAAANRLTQCLPDNGFIARLGGDEFLMIFPDMGHDT 470 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 KI + + + P + ++ + SIG A + E+++ A++AMY +K Sbjct: 471 QKIEQLSQNIIRQFERPFFIQNHQLITSISIGIAISPQNGKDGMELMRKADMAMYLSKKH 530 Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 + E F S RS + + +L A++ + L Y P + E+ G+EAL++ Sbjct: 531 KQSRYEFFTESMERSSEDRLNRELELRDAIQREQFVLHYQPQVSAKTREMTGVEALLRMK 590 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 P S F+ +AEE +I I ++++ R +W D I + +N+++K Sbjct: 591 APDGSLKSPEAFIELAEESGLIIDIGRWVIDTACRQAKTWYDNG--LKIPVAVNLSAKQF 648 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 +L + ++ + K +PS ++L +ES+ M N ++S+ +L L+ +G+ +++DDFGT Sbjct: 649 NSEDLIDLIKLTLKKYDLTPSLLELEVTESMTMDNIKQSKQVLTSLKHLGVRISIDDFGT 708 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL +P +K + S + K I +II M + +IA+ + Sbjct: 709 GHSSLSYLKDLPIHRLKIDKSFIEDILNDSKSEQITGAIIAMGHQLSLEVIAEGVETFAQ 768 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L+ GCD +Q + A PL + I K + Sbjct: 769 AQLLSAQGCDDLQGFYYAKPLPASDIEKFIA 799 >gi|270158623|ref|ZP_06187280.1| sensory box protein/GGDEF domain/EAL domain-containing protein [Legionella longbeachae D-4968] gi|289166555|ref|YP_003456693.1| regulatory protein (GGDEF, EAL, PAS and PAC domains) [Legionella longbeachae NSW150] gi|269990648|gb|EEZ96902.1| sensory box protein/GGDEF domain/EAL domain-containing protein [Legionella longbeachae D-4968] gi|288859728|emb|CBJ13701.1| putative regulatory protein (GGDEF, EAL, PAS and PAC domains) [Legionella longbeachae NSW150] Length = 974 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 139/577 (24%), Positives = 267/577 (46%), Gaps = 9/577 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ + + + I R LA S V + + + I+G + Sbjct: 397 IGIMRDISERKAYEEKILESETRFRLAFDYSPIGVALVSLEGHWLKVNKTLCDIVGYSES 456 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 M N+ H +D + + Q E R D + W+++ + Sbjct: 457 EML--RMNFQTITHPDDLELDLKYVKQLYDGEIPFYQMEKRYIRKDKKITWILLIGAIIR 514 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 N G L YIG DI ++K+ + + A+ D LTG+ NR + L + + Sbjct: 515 NEQGTPLYYIGQFQDINDKKEKEKELSIKAYIDTLTGLVNRNQLENSLNLTILSALRHQQ 574 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + V ID+D +K++ND LG GD++L ++ R ++ DI ARL G+ F ++L Sbjct: 575 -QFAVFFIDLDNFKQVNDSLGHDAGDELLKVISDRFRNSIRKTDIAARLGGDEFILVLHD 633 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + A FA + + PI + E E+ VTASIG + + + ++ +A+LA+Y Sbjct: 634 IKSPEIAAVFAENILNILIKPITIKEHELLVTASIGISFYPADGEDYHSLINSADLALYK 693 Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + + + K L A++N+E YL Y P I + ++I G E L Sbjct: 694 AKEEGRNNYQFCTKKINEEIKNKLLFKNALKNALKNNEFYLTYLPKINIQ-KKITGFETL 752 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W++ ++ +S S+ + +AEE+ +I I+ ++ + S + PI I +N++ Sbjct: 753 LRWENKEYQTVSPSKIIPLAEEIGIINQIDDWIYDTAIDQ-GSHLRTSCHLPIKISVNVS 811 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 +K L E + +++ + +++ ES++M NP S ++ L+ GI + +D Sbjct: 812 TKQYLQPEFSSSVLNKLNQKQFPAQFLEVEIHESLIMQNPNHSIKVIKHLKDNGIGIIID 871 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919 +FGT S L+YL D +K + + E ++ +II +A+++ +IA + Sbjct: 872 NFGTGYSSLNYLNQFNADYIKIDPQFIKHIVENFEHQGLVMAIIALARSLNIKVIAAGVE 931 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L+++GCD +Q +++ PL I + +++ Sbjct: 932 SMDQYHLLSQLGCDELQGYYISKPLLAKEISQFIQQY 968 Score = 75.0 bits (183), Expect = 6e-11, Method: Composition-based stats. Identities = 51/351 (14%), Positives = 116/351 (33%), Gaps = 30/351 (8%) Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263 I+ I +++ S + LG N G + + + I +S Sbjct: 70 IYTIIGFLILTISGATFAEYLFNTSLGVDEFFIKIWLFDQNQYPGRMGLNTSVGFILVSL 129 Query: 264 SLIIFLFM---YLHWNRWHAKVGYITFSGIACIAIL----FCMSFYYPMVTASIARITLA 316 I+F + ++ + A + L F S+Y A + ++ Sbjct: 130 CFILFQYTDKLFIAILTQVIIFSIMLLGISAVLGYLLKLEFLYSWYQYTRMAIHTSLGMS 189 Query: 317 SIVLYYTYFIIYHGMKGY--------ERAVLLIPAWILIFIWFIG--LWMAITKRLDNDI 366 + + ++ + + ++ ++L+ ++ILI I I I + Sbjct: 190 LLSIA--LWLAWVNNHNFSKFYHDSEDKKIILLSSFILISITGIACLAGFTIAGNSLENQ 247 Query: 367 IQPALVGGLVLI---VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 I+ ++ + I ++ + + V+ + + R +G+ + D Sbjct: 248 IELIILILAISIGLGILFLYWQVLPIINQLVVVKKEAIDSSMRLQAIFNHAGEGIITIDT 307 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + P + G ++ G I + R+ ++ ++ + Sbjct: 308 QGTIESFNPAATKMFGYSTKEAVGKNVEI--IIPPDLREKHSAGMEEYLKTHNSTFVGKH 365 Query: 484 RV----RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + +N+ M I I M N ++IGI DI+E+K E IL Sbjct: 366 SMVIPALRKNNEQFPMEIAITEMQVDN--QYKFIGIMRDISERKAYEEKIL 414 >gi|126664611|ref|ZP_01735595.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter sp. ELB17] gi|126630937|gb|EBA01551.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter sp. ELB17] Length = 1020 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 143/560 (25%), Positives = 255/560 (45%), Gaps = 18/560 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + R + + + D + + I G A + G N L Sbjct: 463 EDKVLEAELRIASTAFETHLGIIITDENSIILRANKAFSRITGYAEHDVLGKTPNVLQSG 522 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + F L + V G + E D + + + I + +G + Y+G Sbjct: 523 LQD--ATFYHYLWARVRE-SGSWEGEIWNLRKDGEAYAEWLTITAICGKSGVVQNYVGTF 579 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT++KK+ AF D+LTG+ N+ +RL+ + + T N ++ +D+++ Sbjct: 580 HDITKRKKAEREAHRLAFYDSLTGLANKALLEERLSEVCK-ANTRQNTHAALLYVDVEQL 638 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD---- 632 + +ND G GD VL ++ ++G +++ D LAR+ G+ F I+L + N S +A Sbjct: 639 RSVNDARGYEFGDLVLKAIAEQLGTMVRESDTLARIGGDEFAILLSNLNPSQDVAARVTE 698 Query: 633 -FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--- 688 A + + PI +L+++I V SIG + L+ AE A AK + Sbjct: 699 GVADKVLDAFTRPIEVLQQKIQVNISIGITLIDGRSSPVDQQLQRAEQATQQAKEQAKLR 758 Query: 689 ---GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 + + V+++E+L A+ +L L Y P IR +++G E L++W Sbjct: 759 GEKRISFFDPEIQAQVVQHVLMEEELRNALAEEQLVLYYQPQIR-NPNQLLGYEVLLRWR 817 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HPK G +S + F+ IAE+ +I I +++E+ + +W+ + + + +N++ Sbjct: 818 HPKRGIVSPAVFIPIAEQSRLILPIGRWIIEQACEKLAAWQSEPTTSELSLAVNVSIIQF 877 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 N E + ++ KT P +KL +ES++M +PER ++ RLR +G+ +LDDFGT Sbjct: 878 QSNNFVEQVGQILEKTGAPPRLLKLEVTESLLMNDPERITEMMNRLRSMGVRFSLDDFGT 937 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923 S +SYL +P D +K + S + AI+ SII +AK + +IA+ + E Sbjct: 938 GYSSMSYLNQLPLDQIKIDQSFINEVANNLASSAIVESIIGLAKGLNLEVIAEGVETEEQ 997 Query: 924 IKELTRMGCDYIQDSHVASP 943 L GC Q P Sbjct: 998 RNWLANHGCQNFQGYLFGRP 1017 Score = 54.6 bits (130), Expect = 9e-05, Method: Composition-based stats. Identities = 28/261 (10%), Positives = 69/261 (26%), Gaps = 19/261 (7%) Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLY-YTYFIIYHGMKGYERAVLLIPAWILI 347 + + + P + A II + A + Sbjct: 220 MLVARLPVVAGAAVSPGQILTDALARRFIDSGSDSYQVIIEGPIPNDGEARFYAFKRVPG 279 Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF--------------TVIQHVLAT 393 + + + + L + + +L+V +IG ++ Sbjct: 280 APYIVVVGEKTSVALQDWHQSLWVGATGILLVAIIGLFFLKQFCRRLSVENALLHENRER 339 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 Q ++ R V D + +D L + G ++ Sbjct: 340 KLLQQNAQANESRLQALVNSIPDSTFVFDEHGRFTFAHAQNKGQLLRPVEKLLG--LHYS 397 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + F + + V + E+++ D + R+ +++ G ++ Sbjct: 398 EVLPPELAARF-DGIKTDVEKSQKMQNIEYQL-FIDGEARDYEARVNALTDLEGQHSGFL 455 Query: 514 GIANDITEQKKSLEGILCNAF 534 + DITE K + + Sbjct: 456 TLVRDITEDKVLEAELRIAST 476 >gi|299533004|ref|ZP_07046391.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni S44] gi|298719228|gb|EFI60198.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni S44] Length = 666 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 134/588 (22%), Positives = 253/588 (43%), Gaps = 16/588 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ ++ V +Q I ER +A ++ Sbjct: 90 VLKGVVALMTDVSHHHLATQQIRDSEERMR-KFAAITTEAIVLHRDGIITDGNDALARLV 148 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + G + G L Y+ R L + R RL+ + + Q + I Sbjct: 149 GYSLGELRGTP--VLDYVAPEAR---LRALQNMRSEREDRLESV--IMHKNGQLIPVEIE 201 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 M I + D+T ++ + + D LT +PNR L + + Sbjct: 202 ACTMPGEKDR--HRIVLLRDLTASLQTRQHMDYLTQHDLLTHLPNRARLNHLLADAIARA 259 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 A + R V+ +D+D++K +ND L GD +L L +R+ + DI+AR + F Sbjct: 260 A-GEQSRLAVLSLDLDQFKAVNDSLSHQAGDLLLCELAKRLRSTVGAQDIVARTGSDDFV 318 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L L+ +R + P + ++ ++ S+G A + + +L NAE Sbjct: 319 VVLPDNPGLLETEALLTRLRATAEAPYLIEGTQLVISVSVGIAMYPKDGKCPASLLSNAE 378 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AM AK RG + + + + M+ ++ L AVE E L Y P + E+ Sbjct: 379 AAMQMAKSRGRSFSQFYTPALESRATRMLMQEQMLRNAVERGEFELHYQPQTLMQTGELS 438 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W HP G +S EF+ AE +I A++ ++L + R +W+ Q P I + Sbjct: 439 GFEALVRWKHPHRGLVSPDEFIGFAENRGLIAAVDRWVLYQACRQARAWQQQ-GFPAIPV 497 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++++ ++ + + ++ T + + +E+ +M + + + L L+ +G+ Sbjct: 498 AVNLSAQEFRQRDVVKEVAQALADTGLDACYLHIEVTETTLMLSGNQMQQTLHALKALGV 557 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L +DDFGT S L+YL P D +K + S +T AI+ +I+ M +++ I+ Sbjct: 558 GLAIDDFGTGYSSLAYLRKHPIDRLKIDRSFVTDLPHNPDAAAIVNAIVQMGRSLHLEIL 617 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 A+ + ++ L MGC +Q V++PL + + L++ Sbjct: 618 AEGVESTEQLQLLREMGCAMMQGFLVSAPLSAEQASAWMSQHCQLLQR 665 >gi|228969547|ref|ZP_04130353.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] gi|228790163|gb|EEM37939.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] Length = 785 Score = 495 bits (1275), Expect = e-137, Method: Composition-based stats. Identities = 161/760 (21%), Positives = 303/760 (39%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 38 ILFLSIGDVFLSFIFPIIDLLLILLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 93 Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318 +L+ YL + + + + I L Sbjct: 94 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 153 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 207 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 267 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G D+ + LQ + + W + Sbjct: 268 GKDSAVLIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 324 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ + I AF D +T I NR F L + Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 383 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 442 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 443 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I + +++ Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 561 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 620 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 621 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 680 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 740 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFIVFLS 780 >gi|254000512|ref|YP_003052575.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253987191|gb|ACT52048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 949 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 142/573 (24%), Positives = 260/573 (45%), Gaps = 15/573 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + V I + + D + +D R+ LG+ ++ Sbjct: 377 ARDVTEAKLNELEIVHREIELRTLIDNTPDAITRFDRDARRIFVNNRKLEKLGMERDAIL 436 Query: 447 GPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + + + ILD + G ++ + + IRI P Sbjct: 437 GKKPSE----YPGGTVFSQYEQKILDVVATGQPGFMEMT--GTTPEGETWHSHIRIVPEL 490 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + G + + + DITE E + A+ D+LT +PNR F DR++ +L + Sbjct: 491 DEQGQVQHILAVERDITELVAYRERVYYLAYYDSLTNLPNRTLFNDRISQVLMEAQWSKQ 550 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + VMV+D+D +K IND LG VGD++L + R+ ++ D +AR+ G+ F I+L Sbjct: 551 -KFGVMVLDLDHFKSINDSLGHLVGDELLCATADRLQMAIRTYDTVARMGGDEFAILLPD 609 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +A A + + IA P ++ +E+ ++ S+G A++ + K A+ AMYH Sbjct: 610 IRKPDDLATIANKIVQVIAQPFHIQGKELFISTSVGIATYPLDGEDQEALYKCADAAMYH 669 Query: 684 AKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G ++ + + S S+ + I L A+ N+E L + P + L+ +++G EAL Sbjct: 670 AKSMGRSNYQFYSHDLGSKASEYIAIGTSLRQALRNNEFVLHFQPQMDLLTGKLLGAEAL 729 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP G + +F+ +AEE +I I ++LE I+ + + IN++ Sbjct: 730 LRWHHPLHGLLPPDDFIGVAEESGLIVEIGEWVLENAFNAIVELNR-LRDDKLTVAINLS 788 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ L N+L + L+ KT P+ +KL ES+++ +L + +GI++ +D Sbjct: 789 ARQFLYNDLLAAVSRLLEKTGCLPAWVKLEIRESLLLEENPDVMAVLNAFKAMGITIAID 848 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DF T S LSYLG P VK + M + R ++ +II +A+ + ++A+ + Sbjct: 849 DFCTGYSALSYLGQFPVRQVKIDRLFMQDVVQQQDRAELVNAIIRIAQALHLELVAEGVE 908 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + L GC Q + P+ + +L Sbjct: 909 SASQLAFLREKGCTMAQGFFLGKPMLLEELKQL 941 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 7/147 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +++ + + + + V + DI +D R+ + + G+ Sbjct: 119 NLALVRDISTRKNLQDQLEASEAKFRDLVEHAPDIFIRYDRECRRIFISQAYEEVYGIPL 178 Query: 443 GSMHG--PIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 G P W ++ + + + E + A D Q+ ++I Sbjct: 179 TQALGKKPTEVWGKAWMTPAEYERQLQEIMRSRKPG----NIELQWVADDGQYVCKSLQI 234 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSL 526 P ++NGD++ + I DI++++ + Sbjct: 235 APEFDANGDVVSVLSITRDISQRRAAE 261 Score = 46.1 bits (108), Expect = 0.028, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 5/150 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + + + E Q + +VW D + A A Sbjct: 248 LSITRDISQRRAAENALRLRDEYQRALIDNFPFMVWLKDRQSHLLAANTAYAE---WAQA 304 Query: 444 SMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + + + + D V +V+ + WM I P+ Sbjct: 305 ASTRDVDGKTDFDLFPEEIAKAHIASDQVVLESGKPWHAVDQVKDQHGRQRWMEIYKSPV 364 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532 N ++ +G A D+TE K + I+ Sbjct: 365 R-VNDELKGIVGYARDVTEAKLNELEIVHR 393 Score = 42.6 bits (99), Expect = 0.30, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 8/125 (6%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFR 465 S A+ + ++ D + LG + + I D+ +R Sbjct: 20 LSFALNKVTESIFLIDASSRIRYVNQECCRTLGYSQQDLLAMRVAD---IDPTVDQTVWR 76 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + L +E R + + I G + + DI+ +K Sbjct: 77 DHWQALTAEI--SLTFESRHLTRQGKLLPVEINAN-YFEYAGTAYN-LALVRDISTRKNL 132 Query: 526 LEGIL 530 + + Sbjct: 133 QDQLE 137 >gi|332528397|ref|ZP_08404391.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] gi|332042160|gb|EGI78492.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] Length = 805 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 119/440 (27%), Positives = 223/440 (50%), Gaps = 6/440 (1%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +KK+ + A D LTG+PNR DR + + ++ ++ +D+D +K IND Sbjct: 364 RKKAERQMEYLAHHDTLTGLPNRVLAQDRFAQAKSRADR-ETVKLALLFLDLDGFKTIND 422 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG VGD +L + R+G ++ D ++RL G+ F ++L +++ A + + + + Sbjct: 423 SLGHGVGDALLQQIAVRLGGCVRDSDTISRLGGDEFLVLLSDISSADDTAPVLLKVLERL 482 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699 P+ + RE++ + SIG + + +LK A++AMY AK G N F +++ Sbjct: 483 HEPVRVENRELSTSVSIGVSIYPDDGRDFDTLLKKADMAMYRAKDAGRNTYRYFDEQMNV 542 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 +++ ++ DL A+E SE L Y P I L +VG EAL++W+HP+ G + + F+ Sbjct: 543 EAVEQLALRSDLRHALERSEFVLHYQPQIELATGRVVGAEALVRWNHPERGLVLPARFIP 602 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 AEE +I + +++ R +WR P + + +N+++ ++ + + A++ Sbjct: 603 AAEESGLIIPLGAWVMHEACRQAAAWRRAGL-PSLVMAVNLSAVQFRRGDVEQTVLAVLE 661 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 ++L +ES+++ E + RL++ G+ ++DDFGT S LSYL D Sbjct: 662 AAGLPSEWLELELTESILIHESEGVLATVRRLKQQGVRFSIDDFGTGYSSLSYLKRFEID 721 Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + AI+R+II MA+++ + IA+ + + + L GCD Q Sbjct: 722 KLKIDRSFVRDLAVDADDAAIVRAIIQMARSLGLSTIAEGVETDEMLSRLRAFGCDEAQG 781 Query: 938 SHVASPLGFNSILKLLKERF 957 + A P+ L+E+ Sbjct: 782 YYFARPMPVQEFECYLREQN 801 >gi|298290964|ref|YP_003692903.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Starkeya novella DSM 506] gi|296927475|gb|ADH88284.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Starkeya novella DSM 506] Length = 713 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 131/562 (23%), Positives = 247/562 (43%), Gaps = 11/562 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E + + + D+ V A +G + G + + Sbjct: 148 LRESREALAQVIDTVPAFISAADLEGRCVLVNAQQAASIGRQPADLVGQP---VEALLGE 204 Query: 460 DRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +R LD V L E V + + P+ + G I + + D Sbjct: 205 ERALISRRLDQLVLRTSHALAPREEEVTTPAGEHRIYLTSKAPLHDGAGRITSILTTSID 264 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT+++++ + + A D+LTG+PNR D L L + + ID+D++K Sbjct: 265 ITQRREAEKRLEYLASHDSLTGLPNRLMLRDHLRRELAR-GRRGDQNFALHFIDLDRFKA 323 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND G GD +L ++ + L+ +ARL G+ F ++ + A A+ Sbjct: 324 INDAHGHHRGDRLLQNVADSLTRLVGPSHTVARLGGDEFAVLQPDIDGPEDAERLARAIL 383 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696 + + + ASIG E+L+N++ AMY AK GGN V F Sbjct: 384 HMLTDE-DAGPSAPRIGASIGITVAPLDGADPDELLRNSDQAMYLAKSLGGNTVRFFAAD 442 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ + R ++ +L A++ + L Y P+I L ++G EAL++W HP+ G ++ Sbjct: 443 MAPRATQRAQMEGELRDALKRRDFVLYYQPLIDLRRNAVIGAEALLRWSHPQRGVLAPGA 502 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I IN ++L R WR P+ I +N++ ++ E ++ Sbjct: 503 FLGLAEESGLIVPINEWVLREACRQGAQWRGAGLG-PLRIAVNLSPIQFRRQQVGELVRD 561 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ + + P + L +E +++ E + LR +G+SL++DDFGT S L+Y+ Sbjct: 562 VLEDSGFPPDLLDLELTEGILIDYDETVTEQMHLLRSLGVSLSVDDFGTGYSSLNYIRNF 621 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + + +AI+R+II + + ++A+ + ++ L GCD Sbjct: 622 PLHRLKIDRSFVKDLANDPRALAIVRTIIDLGHILNLQVVAEGVEEGAQLETLRAEGCDE 681 Query: 935 IQDSHVASPLGFNSILKLLKER 956 +Q + + P+ + + L +R Sbjct: 682 VQGYYFSPPVPADVFARWLAQR 703 >gi|327482606|gb|AEA85916.1| putative sensory box/GGDEF family protein [Pseudomonas stutzeri DSM 4166] Length = 751 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 139/594 (23%), Positives = 256/594 (43%), Gaps = 32/594 (5%) Query: 379 VILIGFTVIQHVLATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 ++ I F + + T +Q + R + A+ GS D +W+W++ D++ + Sbjct: 146 LLKIVFFDMILAIDTYSAAQRHALEDSEARLTRALRGSEDGIWEWNVEHDQLHLSERWTA 205 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 +LG+ R+W +H +D R + + R L +E+RVR + W++ Sbjct: 206 MLGM-PAQPSYTSRSWFERVHPDDLPGLREAIADHLNGRTPSLAHEYRVRIEGGDYLWVL 264 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 +R G LR G DI+ +K + E + A D LTG+ NR + L + Sbjct: 265 VRGVAERCEQG-TLRMAGSQTDISARKAAEECLRHAARHDALTGLANRLHLDELLKEV-- 321 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 ++ +D+D++K IND LG GD VLV + +R+ L+ D LAR G+ Sbjct: 322 -QQRPHGRAAALLFVDLDRFKLINDSLGHGAGDQVLVEVAQRLLRCLRPGDHLARFGGDE 380 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +L A M ++ P+ L ER ++V+ASIG A + + + Sbjct: 381 FVALLGDLACEADAERVAQRMLVALRQPLQLGERTLSVSASIGIAPLQRDGQALNAL-QA 439 Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LA+Y AK G + F S + ++ ++ L A+ E L Y PI R+ Sbjct: 440 ADLALYRAKSAGKDQFALFCDGLHSKAARQLELESALAQALTRREFALHYQPICRVEQGR 499 Query: 735 --IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +VG+EAL++W ++ EF+ + EE I + ++L + W+ Sbjct: 500 PYVVGVEALLRWRFND-KPVAPHEFIPVLEESREIVRVGEWVLREACCQVRRWQQA-GQT 557 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES--------VVMGNPERS 844 ++ +N++ + L + + ++ +T P S ++M + E + Sbjct: 558 QLYCAVNLSIRQLQQPGFTDLLARVLRETGLRPD--------SLLLEITETLLMQDSEAT 609 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902 L + +G+ L LDDFGT L YL P +K + S + +AI R++ Sbjct: 610 MSSLHEISALGVRLALDDFGTGYCSLGYLKRYPLHVLKVDRSFIAAAPDDPDSVAISRAV 669 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I + +++ ++A+ + + L GC +Q + P + ++ Sbjct: 670 IGLGQSLGLAVVAEGVERPEQVAFLGAEGCQLVQGYWFSPPRSAAELQRMFDRE 723 >gi|256391676|ref|YP_003113240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Catenulispora acidiphila DSM 44928] gi|256357902|gb|ACU71399.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Catenulispora acidiphila DSM 44928] Length = 864 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 133/604 (22%), Positives = 256/604 (42%), Gaps = 20/604 (3%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 L T + + R + + D Sbjct: 265 PETRSALRAGLASAFAEGLRERTRAEQSSIHEAVLTAYRAGEARFRTVFRNAALGIVITD 324 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + P +A +LG+ + + G R I + + ++ + + + + Sbjct: 325 KHGQVLEVNPALAEMLGVDAYAARG--RTIRNLIDPTEPGEYWRGYNALLAGEQTEAEAD 382 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 R+R D W +R + + +GD+ I + D+TE++++ + + A D LTG+P Sbjct: 383 TRIRRLDGGVVWTHVRTTAVRDDSGDVALVIALHEDVTERRRATDQLRHQATHDALTGLP 442 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR LD + +L + R + +D+D +K +ND LG GD++L + R+ Sbjct: 443 NRVRLLDAVEELLRSAG--PEDRLGLCFLDLDGFKGVNDTLGHQAGDELLTEIAHRLSAA 500 Query: 603 LKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 ++AR+ G+ F I+ + + + ++ P+ L +TVTAS G Sbjct: 501 TDPRRHVVARMGGDEFVILFRRTQGAQSVFPVIEKVLDAVRQPVLLDGHSVTVTASAGLV 560 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719 ++ +++E+L+ A++ +Y AK G F + + + L A+++ E Sbjct: 561 ERPAAAASATELLRAADITLYWAKSAGKADFALFDEDRNAREVHRYALAQALPAALDSGE 620 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 ++L Y PI+ L +EAL++W HP+ G + EF+ +AEE I + ++L+R Sbjct: 621 MFLDYQPIVDLAGGRPPMVEALVRWRHPERGLLKPEEFIPVAEETGAIVELGRWVLDRAV 680 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 RD +W D + +N+A + + D L + + + P R+ L +E+ +M Sbjct: 681 RDAAAWPDGPA-----VAVNVAVRQVHDYGLVREVATALEVSGLPPRRLCLEITETALMD 735 Query: 840 NPERSRL---LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896 E L L +GI + +DDFGT S L+ L +P ++K + S + Sbjct: 736 TEEDGLPGPGTLRTLADMGIGIAVDDFGTGYSNLARLRDLPATSLKIDASFVADLGHPDA 795 Query: 897 -----AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 +++ S++ +A T+ A+ I + LT +G DY Q H + P+ I Sbjct: 796 GDFAESVIISLVALAHAAGMTVTAEGIETADQARRLTTLGVDYGQGFHYSRPVSAERIEA 855 Query: 952 LLKE 955 ++ E Sbjct: 856 VMAE 859 >gi|218898849|ref|YP_002447260.1| sensory box/ggdef family [Bacillus cereus G9842] gi|218544966|gb|ACK97360.1| sensory box/ggdef family [Bacillus cereus G9842] Length = 914 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 150/737 (20%), Positives = 310/737 (42%), Gaps = 50/737 (6%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I L ++ Sbjct: 191 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPIL-LIAIAGSI 249 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363 P S + + ++ +++ I + + ++ Sbjct: 250 PEDHNSHKNYFIVNPIIGKKALVVF-----------------PYLAVAILIGFTLKEQTS 292 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLATGYFSQGIFS 402 + + + ++I +Q + S+ + Sbjct: 293 SSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQ 352 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 ++ D ++ D+ + + +LG + + G I D+ Sbjct: 353 KQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKH 410 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 L+ LQ + D +++ + I P+ +G I + DIT Sbjct: 411 KLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITAL 467 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 KK E I AF D +T I NR F +L ++ + + ++ +D+D++K IND Sbjct: 468 KKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAKIAGS-EFALLYLDLDRFKAINDT 526 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG + GD +L + +R L L+R+ G+ F II+ + + + + + + Sbjct: 527 LGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMK 586 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700 + E ++T++ SIG A + S I ++ +LKNA +AMY AK + ++ Sbjct: 587 KSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSLSIYDDVIAKK 646 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ I Sbjct: 647 IERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPI 706 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE I +I + LE+ + + W + I +N+++K+ + + + ++ Sbjct: 707 AEETLQIISIGKWTLEQACKQMKRWH-GLGYSHLKIGVNLSAKEFEQEDFVRSISSTLTN 765 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T S + L +E + M + + + L L+ +GI +++DDFGT S L+YL P DT Sbjct: 766 TGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDT 825 Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + + + + + I+++II +A + ++IA+ + + + L + C +IQ Sbjct: 826 LKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGY 885 Query: 939 HVASPLGFNSILKLLKE 955 + + P+ ++ +LL+ Sbjct: 886 YYSKPIHIDAFTELLEN 902 >gi|167033959|ref|YP_001669190.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166860447|gb|ABY98854.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 847 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 133/671 (19%), Positives = 279/671 (41%), Gaps = 25/671 (3%) Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 + V + + L + + RA L + L W + Sbjct: 191 AVMVFIRVLSPKVLLVLGESAGLSGVAVSDSTDQRKGRAALALEGIGLALTWDLPQPGTQ 250 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL------ATGYFSQGIFSDGERQSLAVL 412 + + A++ + I + + + A + S ER Sbjct: 251 LIKTVVTPLAIAVLLIALSIALFARYAMRASTRIDRSHRALMISRAALQSSEERFKAVAE 310 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + D +W+ D++ + + + G L D + +T L S Sbjct: 311 AASDWIWETDVLLRLTYLSDRFSELTGHPVEVWRQRPITELLSC---DTSHLQTWLHSLA 367 Query: 473 G-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 G L+ ++ + Q I R + + + + G +DIT++ + I Sbjct: 368 ATGSSGTLRCQY--QDHLGQQRTCRIASRAIVDQS-VCTGFRGTCSDITDEVAAHAQIQH 424 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 + D LTG+PNR L + L+ ++++D+D +K IND LG GD V Sbjct: 425 LSSHDALTGLPNRNKLFRFLEQSMT---GTGPLQVALLILDLDNFKPINDSLGHPAGDAV 481 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 L+ + R+G+ + D++ARL G+ F +++ + + F I + ++I P+ + Sbjct: 482 LLEVAGRLGQATRDSDLVARLGGDEFIVVVTRPGDHNNMERFCIRLIEAIKRPMRVEGHS 541 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 + V S+G T S++++ A++A+Y+AK G N F D+ +++ Sbjct: 542 VQVGVSLGVVMSAEYPGTPSDLIRYADVALYNAKQAGKNTWRFFSAQLNAALMDKRVLES 601 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 +L + EL L + P ++ + EAL++W HP+ G + F+ +AEE +I Sbjct: 602 ELRDGIPRGELVLHFQPRFKVDGVSLASAEALVRWQHPRLGLLRPDRFIPLAEESDLIVL 661 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 + ++L+ W I + +N++ +++ + + T R++ Sbjct: 662 LGNWVLQEACNKARGWPQA-----IMVSVNMSPAQFSRSDVVRDVGDALRTTCLPAHRLE 716 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +E+V++ + E + + L+++G+ L +DDFGT S L YL PFD++K + + Sbjct: 717 LEITENVMLNDVEGALHTMHALKELGVRLNMDDFGTGYSSLGYLRTYPFDSIKIDKRFVQ 776 Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 + +++++II + + T+ A+ + + L+ C +Q ++ PL Sbjct: 777 HLGKSGSDRSVVQAIINLGNAMGMTVTAEGVETAEQLALLSDDQCHEVQGFLLSKPLENE 836 Query: 948 SILKLLKERFP 958 +++ +++E P Sbjct: 837 ALIGMMREPIP 847 >gi|332994026|gb|AEF04081.1| signal transduction protein [Alteromonas sp. SN2] Length = 1045 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 127/559 (22%), Positives = 250/559 (44%), Gaps = 14/559 (2%) Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 E+ L + + ++ D + + I G + G N Sbjct: 473 EEKLKLSASVFSHAREGIFITDSNANIIDVNKTFVDITGYERNEVLGKKPNMFKS-GKQS 531 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + + S + +G E + +++ + ++ + +++ G++ YI I +DI+ Sbjct: 532 PEFYHHLWASILN--KGYWAGEIWNKRKNHEVYAQLLTVSAVNDDEGNVKNYIAIFSDIS 589 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E K+ + A D LT +PNR +RL L +D V ++D+D +K+IN Sbjct: 590 EAKEQQYKLEHMAHYDVLTNLPNRSLLAERLDRALSQCKSDKGF-VAVALLDLDGFKEIN 648 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G +VGD++LV L R+ L+ D ++R G+ F +L + M + Sbjct: 649 DNFGHSVGDELLVILAHRLKGTLRETDTISRFGGDEFVTVLANLKQPQDFVAIIKNMLRV 708 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P+ + E ++ V+ASIG + + + +++++A+ AMY AK +G N F + S Sbjct: 709 ASEPVKIGESQLKVSASIGVTLYPADNTDADQLIRHADQAMYLAKQKGKNCYHLFDIESE 768 Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + + + + A+ N E L Y P + + EI+G EALI+W HP G +S + F+ Sbjct: 769 DAIKARHEILQSITTALHNREFVLYYQPKVNMRTGEIIGAEALIRWKHPVEGILSPAAFL 828 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 E + I +++E + W I I +NI++ + + L+ Sbjct: 829 PFIENHQLSIDIGEWVIEESLQQFSRWNKLG--VHIPISVNISALQIQQRNFPIRLARLL 886 Query: 819 SKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 SK P +L E+ +G+ ++ ++ K+G++ +DDFGT S L+YL +P Sbjct: 887 SKVPNVPPEAFQLEVLETSKLGDIKKVAEIMDDCVKLGVTFAIDDFGTGYSSLTYLRRLP 946 Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + + + + I+ +I +AK+ ++IA+ + L +GC+ Sbjct: 947 AKVIKVDQTFVRDMLIDPEDRTIVVGVIALAKSFNRSVIAEGVETIAHGTSLLNLGCELA 1006 Query: 936 QDSHVASPLGFNSILKLLK 954 Q +A P+ + + Sbjct: 1007 QGFGIARPMPATDMPDWIA 1025 Score = 61.1 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 56/221 (25%), Gaps = 11/221 (4%) Query: 314 TLASIVLYYTYFIIYHGMKGY-ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372 L +IV+ ++ + + L+ + + + ++ +Q Sbjct: 270 ILTAIVILLVGVSVWGVRRNVLKPIRTLLQSTKALAEGKEVSDAPMHGSVELVKLQQRFT 329 Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 T ++ + + + + WD Sbjct: 330 SMAK--------TRLEAEKRLIDSQASLLESKNILASHIENTPLGCIAWDPQLICTDWNK 381 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 I G G + L I + + + + + + Sbjct: 382 SAEFIFGYKKEEAIGKHASEL-IIPPELQTEIDNGFAQLLKKKAPK-RKINKNVTKLGHP 439 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 P+ + G+++ + DIT+ K E + +A Sbjct: 440 IICEWYSTPIFDLAGNVISVTSLVQDITKNKHLEEKLKLSA 480 >gi|254561939|ref|YP_003069034.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254269217|emb|CAX25183.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with PAS sensor, signal transduction histidine kinase and methyl-accepting chemotaxis domains; putative membrane-associated protein [Methylobacterium extorquens DM4] Length = 954 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 131/572 (22%), Positives = 248/572 (43%), Gaps = 27/572 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454 + + A+ + +D + + G+ + ++ IR+ Sbjct: 391 EDQLKRSNAQLDAALSNMLQGLCLYDAEGGLLVYNRRFCDMFGVDAAALRPGMSIRDVAR 450 Query: 455 YIHIN-DRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + D +L + R +R I + Sbjct: 451 LVEASSDNGRAIDLLVEQEALLQRGLSASLCCPIRT---------DCIVALKQQPTAEGG 501 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 +I D+T++ ++ I+ A +D LTG+ NR F +RL + + Sbjct: 502 WIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAARLDDGAGAGFATLCL 561 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----S 627 D+D++K++ND LG +GD +L S+ R+ L+ D++ARL G+ F I+ Sbjct: 562 DLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHAR 621 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + + P L +TV SIG + + ++LK+A+LA+Y AK Sbjct: 622 RDASALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKAT 681 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G F R ++ DL AV N E LV+ PI++L + I EAL++W Sbjct: 682 GRGCWAFFDEEMDVELRKRRALESDLKKAVGNGEFELVFQPIVKLDRQRIASCEALLRWR 741 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G +S ++F+ +AEE I I ++L + + +W I + +N+++ Sbjct: 742 HPERGYVSPADFIPLAEETGTIGEIGEWVLRKACSEAATWPS-----NIRVAVNVSAAQF 796 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + + ++ + R++L +ESV++ + + L L+++G+ + +DDFGT Sbjct: 797 KNAAVVRAVMDALAASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGT 856 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PFD +K + S + I+RS++ + +++ T A+ I E Sbjct: 857 GFSSLSYLQSFPFDKIKIDQSFVRNLAAPGNSRLIVRSVVGLGRSLGITTTAEGIETEAQ 916 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +++L GCD Q + P+ +I +L+ Sbjct: 917 LEQLRLEGCDEGQGYLFSRPVPSATIRELVTA 948 >gi|95929220|ref|ZP_01311964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95134718|gb|EAT16373.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 1018 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 135/566 (23%), Positives = 253/566 (44%), Gaps = 19/566 (3%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + R L + + + D + +I G + G + G L Sbjct: 446 EALAAERRLKLITKVFENTAEAIIVTDRCNQIIEVNQAFISISGYSRGEVLGQNPRLLQS 505 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H +D F + + G + E R + + + + I + + +G I + I Sbjct: 506 DH-HDGAFFAQMWKQLID--TGHWEGEVWNRRKNGEEYVSWVTIDTIRDHDGSIKNFFSI 562 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 ++DI++ K++ + A+ D LTG+PNR SF +L L D+ VMV+D++ Sbjct: 563 SSDISQIKEAERQLHQLAYFDTLTGLPNRVSFAQKLEEHLTTC--DEACNLAVMVLDLNA 620 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IN+ LG + D +L + R+ +AR+ G+ F IL ++ Sbjct: 621 FKLINESLGPVLADKLLQMFSERLTLCSYDDSFVARIGGDEFAFILR----KQRVRSLLD 676 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + + P + + +++T S+G A T SE+LKNA +A+Y K N + Sbjct: 677 ELFECVEAPFVIGAQRVSLTTSVGIAVAPDDGETVSELLKNANIALYSIKDIRRNSFSYY 736 Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 +S +R+ + E L AV+N E L Y P I L D +VG EAL++W H + G + Sbjct: 737 EQVMSDRVIERMSLAEMLREAVDNGEFELYYQPKINLKDGMVVGAEALLRW-HSRDGMVP 795 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ IAE+ +I I ++L + WR + + +N++ + L Sbjct: 796 PDRFIPIAEQTGLILPIGEWVLLQACEQAHIWRQEYPE--FHMGVNLSPAQFDLDYLPRL 853 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++ + ++L +E +++ + + + +L LR +G+ +++DDFGT S LSYL Sbjct: 854 VADILKEAQLPAEALELEITEGMIIEDIDNTVQILRSLRDLGVEISIDDFGTGYSSLSYL 913 Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S M + ++ SI+ +A+++ + A+ + E + L Sbjct: 914 TRLPLDILKIDRSFMFEVPDSRDSTNVVLSILALARSLNLKVTAEGVETEDHVTLLHDHR 973 Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957 C YIQ + PL + ++ R Sbjct: 974 CTYIQGYFCSRPLPVAEFEEFMRHRQ 999 Score = 58.8 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 1/151 (0%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 V IG T+ + + Q F +R S + SG +V D + Sbjct: 304 EVAAIGNTINEMLERLRVGDQIRFQQEKRFSDMIEHSGLVVIGIDHTSSIILFNQAAEKA 363 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G A + + + ++ + + + + ++ D + + Sbjct: 364 TGYAREDVL-QENFFGLFTSPATAEHLGGYIAKAMAHGEFTGDFHAPLKMRDGRVRQFLW 422 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + NG I +IG D+TE + Sbjct: 423 DAIFEYDENGQIDNFIGFGRDVTEALAAERR 453 >gi|228902253|ref|ZP_04066413.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] gi|228857368|gb|EEN01868.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] Length = 891 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 150/737 (20%), Positives = 310/737 (42%), Gaps = 50/737 (6%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I L ++ Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPIL-LIAIAGSI 226 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363 P S + + ++ +++ I + + ++ Sbjct: 227 PEDHNSHKNYFIVNPIIGKKALVVF-----------------PYLAVAILIGFTLKEQTS 269 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLATGYFSQGIFS 402 + + + ++I +Q + S+ + Sbjct: 270 SSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQ 329 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 ++ D ++ D+ + + +LG + + G I D+ Sbjct: 330 KQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKH 387 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 L+ LQ + D +++ + I P+ +G I + DIT Sbjct: 388 KLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITAL 444 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 KK E I AF D +T I NR F +L ++ + + ++ +D+D++K IND Sbjct: 445 KKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAKIAGS-EFALLYLDLDRFKAINDT 503 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG + GD +L + +R L L+R+ G+ F II+ + + + + + + Sbjct: 504 LGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMK 563 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700 + E ++T++ SIG A + S I ++ +LKNA +AMY AK + ++ Sbjct: 564 KSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSLSIYDDVIAKK 623 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ I Sbjct: 624 IERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPI 683 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE I +I + LE+ + + W + I +N+++K+ + + + ++ Sbjct: 684 AEETLQIISIGKWTLEQACKQMKRWH-GLGYSHLKIGVNLSAKEFEQEDFVRSISSTLTN 742 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T S + L +E + M + + + L L+ +GI +++DDFGT S L+YL P DT Sbjct: 743 TGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDT 802 Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + + + + + I+++II +A + ++IA+ + + + L + C +IQ Sbjct: 803 LKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGY 862 Query: 939 HVASPLGFNSILKLLKE 955 + + P+ ++ +LL+ Sbjct: 863 YYSKPIHIDAFTELLEN 879 >gi|94264857|ref|ZP_01288632.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93454678|gb|EAT04943.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 833 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 127/583 (21%), Positives = 247/583 (42%), Gaps = 12/583 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ L SD + + + + + + I G + Sbjct: 257 TLRRALRYAIIRHRRDSDMRLAAAVIKHTREGITISRSDGTIIEVNDAFCRITGYRREDV 316 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G L DR+ + + + G E + + + + ++ I + + Sbjct: 317 IGQNPRLLQS-GRQDREFYVEMWRAL--GEEGFWSGEIWNKNKEGRIYPQLLTISAVPDG 373 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G Y+ I +DI+E K+ + + A D LTG+PNR DRL + + R Sbjct: 374 TGKPGHYVAIFSDISELKEQQQRLERIAHYDTLTGLPNRDLLADRLNHAMIQTIRRQ-TR 432 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V +D+D +K IND G VGD +L +L R+ + L+ D L RL G+ F I Sbjct: 433 LAVAYLDLDGFKAINDTHGHDVGDFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLP 492 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHA 684 ++ + + AMP++ E + V+AS+G + S+ + ++L+ A+ AMY A Sbjct: 493 DNETCLPLLQRLLNAAAMPVSYQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQA 552 Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F + + A+ + E L Y P + + +VGLEALI Sbjct: 553 KQTGKNRYHLFDAVQEVAMRGHHELLGRIKRALNDQEFILYYQPKVNMRSGVVVGLEALI 612 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G ++ + F+ E+ + A+ ++L + +WR + + +NI++ Sbjct: 613 RWQHPELGLLAPAYFLPAIEDHPLAVAVGDWVLATALAQLAAWRRAG--ISLPLSVNISA 670 Query: 803 KDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L ++ ++ +++ +++L ES + + ++ ++ + R +G+ LD Sbjct: 671 RQLQQDDFVAKLEQQMARWPEVPADQLELEVVESSALADIDQVSKIITQCRAMGVGFALD 730 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P T+K + S + +AIL ++ +A+ +A+ + Sbjct: 731 DFGTGYSSLTYLKRLPARTLKIDRSFVADMLDDPDDLAILEGVLGLARAFNRQTVAEGVE 790 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 L ++GC+ Q A P+ + + + Sbjct: 791 SAAHADSLLKLGCEVAQGYWFAKPMPMAEVPAWVAAYETRSRR 833 >gi|302879322|ref|YP_003847886.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302582111|gb|ADL56122.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 995 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 154/568 (27%), Positives = 268/568 (47%), Gaps = 16/568 (2%) Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + E +A + + + D + + G + + G +L Sbjct: 430 ALRDAQEYLRIAATTFETHEAILITDARANIIRVNQAFQDTTGYCAEEVLGKNPRFLSS- 488 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D + + V G E R D + + I + N G+ Y+ I Sbjct: 489 GCQDSAFYVEMWQQLVAN--GTWSGELWDRHKDGHIYPKNLTITAVKNILGETTEYVSIF 546 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E+K++ E I AF D LT +PNR+ LDRL L +SA + V+ +D+D++ Sbjct: 547 SDISERKRAEEEIRNLAFYDVLTQLPNRRLLLDRLHLALSVSARSGSY-GAVLFLDMDRF 605 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIA 631 K++ND LG GD +L+ + RI ++ D +AR G+ F I+L + S K A Sbjct: 606 KRLNDTLGHGCGDLLLIEVAERIRFCVREVDTVARFGGDEFVILLEEVGKNADEASKKAA 665 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A +R ++++P + E E + SIG + + ++LK+A++AMY AK G N Sbjct: 666 LIAEKIRAALSVPYKIKEHEYHSSPSIGVNLYCGNGNAVEDLLKHADMAMYEAKESGRNA 725 Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 V F + S+R ++ DL AV + +L L Y + ++ +G EAL++W HP Sbjct: 726 VRFFDPVMQHSVSERASLEADLHRAVPDQQLQLYYQIQVD-SNQRSLGAEALLRWIHPTR 784 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S ++F+ +AEE +I + ++L+ R + W + M + + +N++ K + Sbjct: 785 GMVSPAQFIPLAEESILILELGDWVLDAACRQLAIWSEADLMRHLTLAVNVSGKQFKQRD 844 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 E + ++ SR+KL +ESVV+ + + L+ + + L++DDFGT S Sbjct: 845 FVEKVARILQVHQVDASRLKLELTESVVLNDVTDVISKMQALKALRVRLSMDDFGTGYSS 904 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL +P D +K + S + + ++++II MAKN +IA+ + E L Sbjct: 905 LSYLKQLPLDQIKIDQSFVRDMTFDQNDAVMVQTIIDMAKNFGLNVIAEGVETEAQKLLL 964 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++GC Q + PL LLKE Sbjct: 965 EQLGCLNYQGYLFSKPLPIAQFEALLKE 992 >gi|240139525|ref|YP_002964000.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with PAS sensor, signal transduction histidine kinase and methyl-accepting chemotaxis domains; putative membrane-associated protein [Methylobacterium extorquens AM1] gi|240009497|gb|ACS40723.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with PAS sensor, signal transduction histidine kinase and methyl-accepting chemotaxis domains; putative membrane-associated protein [Methylobacterium extorquens AM1] Length = 954 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 131/572 (22%), Positives = 248/572 (43%), Gaps = 27/572 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454 + + A+ + +D + + G+ + ++ IR+ Sbjct: 391 EDQLKRSNAQLDAALSNMLQGLCLYDAEGGLLVYNRRFCDMFGVDAAALRPGMSIRDVAR 450 Query: 455 YIHIN-DRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + D +L + R +R I + Sbjct: 451 LVEASSDNGRAIDLLVEQEALLQRGLSASLCCPIRT---------DCIVALKQQPTAEGG 501 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 +I D+T++ ++ I+ A +D LTG+ NR F +RL + + Sbjct: 502 WIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAAHLDEGAGAGFATLCL 561 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----S 627 D+D++K++ND LG +GD +L S+ R+ L+ D++ARL G+ F I+ Sbjct: 562 DLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHAR 621 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + + P L +TV SIG + + ++LK+A+LA+Y AK Sbjct: 622 RDASALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKAT 681 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G F R ++ DL AV N E LV+ PI++L + I EAL++W Sbjct: 682 GRGCWAFFDEEMDVELRKRRALESDLKKAVGNGEFELVFQPIVKLDRQRIASCEALLRWR 741 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G +S ++F+ +AEE I I ++L + + +W I + +N+++ Sbjct: 742 HPERGYVSPADFIPLAEETGTIGEIGEWVLRKACSEAATWPS-----NIRVAVNVSAAQF 796 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + + ++ + R++L +ESV++ + + L L+++G+ + +DDFGT Sbjct: 797 KNAAVVRAVMDALAASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGT 856 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PFD +K + S + I+RS++ + +++ T A+ I E Sbjct: 857 GFSSLSYLQSFPFDKIKIDQSFVRNLAAPGNSRLIVRSVVGLGRSLGITTTAEGIETEAQ 916 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +++L GCD Q + P+ +I +L+ Sbjct: 917 LEQLRLEGCDEGQGYLFSRPVPSATIRELVTA 948 >gi|228903989|ref|ZP_04068096.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] gi|228855634|gb|EEN00187.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] Length = 785 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 161/760 (21%), Positives = 303/760 (39%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 38 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 93 Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318 +L+ YL + + + + I L Sbjct: 94 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 153 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 207 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 267 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G D+ + LQ + + W + Sbjct: 268 GKDSAVLIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 324 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ + I AF D +T I NR F L + Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 383 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 442 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 443 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I + +++ Sbjct: 502 IAMYSAKEKGNNAVCMYDEKLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 561 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 620 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 621 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 680 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 740 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFIVFLS 780 >gi|186472006|ref|YP_001859348.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia phymatum STM815] gi|184194338|gb|ACC72302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia phymatum STM815] Length = 772 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 142/598 (23%), Positives = 257/598 (42%), Gaps = 25/598 (4%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 L I +G V Q ++ + E L V + + + Sbjct: 173 QALLREIGQSVGLAVHQDLMRKR-----LAQSEEHHRLVVDHLNEGIVVQSREGVVLACN 227 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAA 488 P +L + I + +D + + R + R+ Sbjct: 228 PSARRMLRATGEVIGRDIYKVIRAAFWDDGSPVETAEQPTRRVLRTGRPVVGITLRLELV 287 Query: 489 DNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 W+ + P+ + + NDI+ + + + A +D+LTG+ NR Sbjct: 288 GGGSIWITENVVPIFKRGETEAGAVLVSFNDISAVQAARAQLQYLATRDSLTGLYNRAYL 347 Query: 548 LDRLTTILD---LSATDDNL-------RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 DR++ L +A R V+ +D+D +KK+ND+ G GD +L S+ Sbjct: 348 ADRMSERLAPHTSAAAHGRGEPRAAARRLAVLFVDLDGFKKVNDIAGHEAGDALLCSVAA 407 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ ++ D LAR+ G+ F I ++ + A + +IA P + E + AS Sbjct: 408 RLAGCVRSEDTLARVGGDEFVIATGDYTDASFLTSLAQRVLDTIARPFAVGGNEYYLGAS 467 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 IG + + + +++NA+ AMY AK RG ++ + F + + I++ L A+ Sbjct: 468 IGISLFPDDGCDAQTLMRNADSAMYDAKQRGRHNFQFFTAELSQRLKRRFGIEQSLRRAL 527 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 EL L Y PI+ IVG EAL++W + + G +S EF+ +AE+ MI I ++L Sbjct: 528 AAGELSLAYQPIVEGATGRIVGAEALLRWRNDELGQVSPVEFIPVAEDTGMIIDIGRWVL 587 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 E R + WR P + I +N++ + + + EL + A + +T PS ++L +E Sbjct: 588 ENACRQAVEWRR-TITPHLMIAVNLSPRQI-NGELIGHVAATLEQTGLEPSALELEITEG 645 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 V+M + E LL L +G+ +++DDFGT S LSYL P ++K + S + G Sbjct: 646 VLMSDSESVMPLLTTLAGMGVRISVDDFGTGYSSLSYLKRFPLHSLKVDRSFVAGLPGHR 705 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 +AI +++ MA ++ ++ A+ + L +GC+ Q P+ + Sbjct: 706 DAVAITHAVVAMAHSLGMSVTAEGVETSEQSAFLRSIGCERQQGYLFGRPVVPGDFAR 763 >gi|146341041|ref|YP_001206089.1| signaling protein [Bradyrhizobium sp. ORS278] gi|146193847|emb|CAL77864.1| putative signaling protein containing multidomains (PAS/GGDEF/EAL) [Bradyrhizobium sp. ORS278] Length = 903 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 152/625 (24%), Positives = 277/625 (44%), Gaps = 36/625 (5%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 I+ + +A +I + L++ +L V + + ++ + + Sbjct: 287 IVTATTTVSAALADWHEQMRFLIGVGVTSVLLIAGML-TVVVRRLLSDHEASNRRLTLEK 345 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HI----- 458 ER AV + +D V + + GL++ + P + I H Sbjct: 346 ERLDKAVNNMTQGLLLFDASERLVISNQRYIDMYGLSA-EVVKPGCTFRELIAHRKARGS 404 Query: 459 ---NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 ND D +L ++ D W+ I P++ ++ Sbjct: 405 LAGNDSDYANAVLREVSRKTSQIIE------TPDG--RWIQIVNEPIAGG-----GWLAT 451 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DITE++++ + I A D LT +PNR F +RL + A + + IDID+ Sbjct: 452 HEDITERRRAEQQITHLAHYDALTELPNRTLFHERLKQEMLGVAQ--GRQLALHYIDIDE 509 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG +GD++L S+ R + + +ARL G+ F ++ + + ++ Sbjct: 510 FKGVNDTLGHLIGDELLKSVGRSLQACVGTAGFVARLGGDEFAVVQTTIKSREDVSCLID 569 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 M +I P + L ++T ASIG A +++KNA+LAMY AK G F Sbjct: 570 DMLAAIRAPRDCLGHQLTADASIGVALIPQHGTDLDQIMKNADLAMYAAKAAGRRTWRFF 629 Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 R ++ DL A+ + +L + Y P + L D+ IVG EAL++W HP GN+S Sbjct: 630 EPEMDAQVKARHQLEVDLRQAMVDDQLEVYYQPCVSLQDDRIVGCEALVRWRHPTRGNVS 689 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +EF+ IAE+ +I + +L + +W + I + +N++ L Sbjct: 690 PAEFIPIAEDTGLINQLGERVLNVACAEAATWPE-----DIRLAVNVSPVQFKSGTLALK 744 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++ + SP R++L +E+V++ + + + L LR +G+ + LDDFGT S LSYL Sbjct: 745 VAKALAASGLSPRRLELEITEAVLIRD-DDALDTLYELRALGVRIALDDFGTGYSSLSYL 803 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 IPFD +K + + +E AI+++++ +A+ + + A+ + E + L R+G Sbjct: 804 QRIPFDKIKIDRCFVKDITESEGSAAIVQAVVNIAEIRKMSTTAEGVETEAQRQVLQRLG 863 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 C +Q + P + L Sbjct: 864 CSEMQGYLFSPPKPAAEVRSLFAAH 888 >gi|90417189|ref|ZP_01225116.1| PAS:GGDEF protein [marine gamma proteobacterium HTCC2207] gi|90330965|gb|EAS46226.1| PAS:GGDEF protein [marine gamma proteobacterium HTCC2207] Length = 873 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 139/591 (23%), Positives = 262/591 (44%), Gaps = 22/591 (3%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 + LIV+ + + R S S D + D + Sbjct: 296 VEIALIVLQRDGECFFNCFVRDLTEHNKNIEELRISAITFNSQDAIIITDADLRTLRVNQ 355 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 + I G +S + G + L + F + + G + E + Sbjct: 356 RVVDITGYSSADLIGLRPSLLSSTVQG--EQFYGDMWRTLETE-GSWEGEVWDTRKNGDV 412 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 +++ ++ + ++ I Y+ +DIT K+ + I AF LT +PNR++ +D ++ Sbjct: 413 FPLLVTVKTIHDAKSRITHYVFSFSDITTTKRDADAIHKLAFFAPLTHLPNRRALIDTVS 472 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 L+ S ++ ID+D +K IND LG +GD +L+ +R+ ++ D +AR+ Sbjct: 473 QALNSSQRHIK-SLALLSIDLDNFKNINDTLGHQLGDKILIETAQRLRRCVRSDDAVARI 531 Query: 613 SGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 G+ F ++L + ++ +++ + + + E++I ASIG A + + Sbjct: 532 GGDEFVVVLENLDSNIESAKVEVEVVTTKILAVLNQSYRVDEQDIHSGASIGVALTDNGQ 591 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725 I E+ K A++A+Y +K G N + F ++ + + + L AV+ + L Y Sbjct: 592 ILIEELFKQADIALYQSKRSGRNQMCFFDLAMEETVTLQAQLANALHSAVQLQQFELYYQ 651 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 + + VG EALI+W+HP+ G +S S+F+ +AE +I +I ++LE + W Sbjct: 652 VQVD-SQQRPVGAEALIRWEHPQLGIVSPSDFIPLAEASDLILSIGQWVLETACAQLKRW 710 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + Q + + + +NI+ + E + I+ SPS +KL +E+V++ N + Sbjct: 711 QSQLHTSGLSVAVNISPRQFHQCNFVETVLQAIASCNISPSLLKLELTETVILDNTSETI 770 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903 + +L++ G+ LDDFGT S LS L K + S + E I+++II Sbjct: 771 EKMHQLQRAGVEFALDDFGTGYSSLSQL--------KMDQSFVRNIGIKEGDDIIVQTII 822 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 MAK++ +IA+ + E + L +GC Q P+ KLL Sbjct: 823 AMAKSLAIKVIAEGVETEAQHEFLDALGCPLFQGYLFGKPVPIAEFEKLLA 873 Score = 54.2 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 8/130 (6%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRT 466 + + D V + D + I G +S + R+ + + + R Sbjct: 207 RQILDRALDGVINLDKQGRVTYWNSEAERIFGYSSD--YAHSRDIIELLLPTHQHEVIRQ 264 Query: 467 ILDSFV---GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 +++ F+ ++E D + I + +G+ + D+TE Sbjct: 265 LMEQFLVVGADDNNHHRFEINAVRKDGCKVPVEI-ALIVLQRDGE-CFFNCFVRDLTEHN 322 Query: 524 KSLEGILCNA 533 K++E + +A Sbjct: 323 KNIEELRISA 332 >gi|302877361|ref|YP_003845925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302580150|gb|ADL54161.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 1561 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 138/571 (24%), Positives = 245/571 (42%), Gaps = 13/571 (2%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E++ L + + + D ++ + + G + G + L Sbjct: 996 ARRELDEQKKLTTKFFDAASEGLMITDSHQNIIKVNHAFVRMTGYDEADVIGKNPSLLSS 1055 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 D + + + G Q E R D + + I + + +G + YI I Sbjct: 1056 GKHED-TFYSAMWQEINQH--GWWQGELWNRRKDGTHYLEWLTIHTLRDEHGHLTNYIAI 1112 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +DIT K + + D LT +PNR R+ + +M ID+D Sbjct: 1113 FSDITLIKAAQRRLEYMVAHDELTSLPNRNELRGRMAQTFARAQRHGGT-FALMFIDLDN 1171 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG GD +L + R+G ++ D +AR+ G+ F ++L + +IA+ A Sbjct: 1172 FKNVNDNLGHDYGDVLLQQVAERLGLCVRTEDTVARIGGDEFNVLLDDV-SETQIANTAQ 1230 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ P + E+++ V+ASIG A + + KNA+ AMY AK +G + + F Sbjct: 1231 RILDHVSKPYLIKEQQVFVSASIGIAVYPKDAEDIETLTKNADSAMYQAKDKGKDSYQFF 1290 Query: 696 RVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 I+ L A++ +EL LVY P L E++G EAL++W +G + Sbjct: 1291 TSDLKEKINHRIEIGNALHKAIDANELKLVYQPEFNLQTGELIGAEALLRWHSSLFGIVG 1350 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ IAEE +I + +++E+ AR + WR P + +N+A + L L Sbjct: 1351 PDEFIPIAEESDLILELGEWVIEQAARQLNLWRKADTPLPGTLFVNVAPRQLARQPLLAI 1410 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + + K + + +E ++ + E + L ++ I + +DDFGT S LSYL Sbjct: 1411 ITRQLQKHRLPSGSLGIEITERTLVNSSEDISVKLHKIELEEIPIAIDDFGTGYSSLSYL 1470 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P +K + G E I +I ++ ++ IA+ I E + L MG Sbjct: 1471 KSFPISFLKIPNQFIDGITTDESDKGIATAIHGVSVALKLQTIAEGIETEDQLIMLREMG 1530 Query: 932 CDYIQDSHVASPLGFNSILKL-LKERFPLVK 961 C Q + P+ N ++L + R V+ Sbjct: 1531 CQSGQGYLLGRPVDPNQFVELFISNRKSHVR 1561 Score = 63.4 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 7/173 (4%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 M+ + N + P L +++ F ++ Q I S +R + + S Sbjct: 838 MSFGGKHYNVLCFPYTSQDQTLGGVIVTFIDQTELME---AQQEILSSKDRLTGVMQNSP 894 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 ++ D +I L GS G I L V ++ Sbjct: 895 MLISIKDPAGRYQFVNNAFESIFALTPGSAIGNTDT---QIFPESIAVLFEKLHFDVLHK 951 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + R++ E R+ D Q HW+ P+++ G + +T +++ E Sbjct: 952 KNRVEAEERILIGD-QQHWLSFICYPINDEKGSVGAVCSQVIIVTARRELDEQ 1003 >gi|296106470|ref|YP_003618170.1| Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Legionella pneumophila 2300/99 Alcoy] gi|295648371|gb|ADG24218.1| Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Legionella pneumophila 2300/99 Alcoy] Length = 771 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 135/586 (23%), Positives = 257/586 (43%), Gaps = 36/586 (6%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGL--ASG 443 + + + + A+ S V D+ ++ + I G Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQHA 255 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + + + + E + +F+W I + P+ Sbjct: 256 LGKGLLTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +S G + YI I ND+T+++ + +L A D+LT +PNR +DR+ + + + Sbjct: 311 DSFGYVKHYICILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D+D++K ND LG ++GD +L ++ R+ + + D +ARL G+ F I+L Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +N L+ A + K I PI + + + +T S+G + + ++K+A+L+MYH Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489 Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + ++ + + + L A++N EL+LVY P+I L +VG EAL Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W G +S ++F+ +AEE MI + + +++ + W + I +N++ Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKA-GFKNLSIAVNLS 608 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG----------NPERSRLLLGRL 851 + L E + ++ + S + + + + L Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQ----------SRFLELELTESLLIEDIDHVVDTMYAL 658 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 + +G L +DDFGT S LSYL P D +K + S +T + AI ++II + ++ Sbjct: 659 KDMGTKLVIDDFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSL 718 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++A+ + E +T GCDY Q +P +IL+ LK Sbjct: 719 NLQVLAEGVENEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764 >gi|228966673|ref|ZP_04127719.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] gi|228793049|gb|EEM40605.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] Length = 891 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 151/737 (20%), Positives = 311/737 (42%), Gaps = 50/737 (6%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I L ++ Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPIL-LIAIAGSI 226 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363 P S + + ++ +++ I + + ++ Sbjct: 227 PEDHNSHKNYFIVNPIIGKKALVVF-----------------PYLAVAILIGFTLKEQTS 269 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLATGYFSQGIFS 402 + + + ++I +Q + S+ + Sbjct: 270 SSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQ 329 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 ++ D ++ D+ + + +LG + + G I D+ Sbjct: 330 KQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKH 387 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 L+ LQ + D +++ + I P+ +G I + DIT Sbjct: 388 KLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITAL 444 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 KK E I AF D +T I NR F +L ++ + ++ ++ +D+D++K IND Sbjct: 445 KKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAKIAES-EFALLYLDLDRFKAINDT 503 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG + GD +L + +R L L+R+ G+ F II+ + + + + + + Sbjct: 504 LGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMK 563 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700 + E ++T++ SIG A + S I ++ +LKNA +AMY AK + ++ Sbjct: 564 KSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSLSIYDDVIAKK 623 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ I Sbjct: 624 IERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPI 683 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE I +I + LE+ + I W + I +N+++K+ + + + ++ Sbjct: 684 AEETLQIISIGKWTLEQACKQIKRWH-GLGYSHLKIGVNLSAKEFEQEDFVRSISSTLTN 742 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T S + L +E + M + + + L L+ +GI +++DDFGT S L+YL P DT Sbjct: 743 TGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDT 802 Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + + + + + I+++II +A + ++IA+ + + + L + C +IQ Sbjct: 803 LKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGY 862 Query: 939 HVASPLGFNSILKLLKE 955 + + P+ ++ +LL+ Sbjct: 863 YYSKPIHIDAFTELLEN 879 >gi|78221920|ref|YP_383667.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter metallireducens GS-15] gi|78193175|gb|ABB30942.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter metallireducens GS-15] Length = 820 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 151/600 (25%), Positives = 279/600 (46%), Gaps = 11/600 (1%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 ++ ++ + + + + + I + + D + Sbjct: 228 QVGQGLLDTRVEVTARNEIGTLAVAFNRMTGELQFTKNEIVTARNFLDNVIQSMADALVI 287 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 ++ P + TILG + G + +R+ R + R + Sbjct: 288 LSTDWTIISVNPALCTILGYGENELLGSPFGRIVAGGAEERELLRE-----MAERGQVPE 342 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 E A D + + M + G+++ + IA+DI+E+K+S E I AF D LT Sbjct: 343 RELIYLARDGAAIPVSVSGAVMRSPTGEVVGIVCIAHDISERKRSEEEIRRLAFYDPLTR 402 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR F D+L + S TD ++ ++ +D+D++K IND LG A GD +L+++ R+G Sbjct: 403 LPNRSLFQDKLAQAIRRSRTDGDM-IALLFLDLDRFKDINDTLGHAYGDQLLLAVAARLG 461 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 + L+ + LARL G+ F ++ + + A ++ + + P + ++E+ ++ SIG Sbjct: 462 DNLRPTEFLARLGGDEFVFLVTGLRDKRSVGSLAHSILELLNTPFEIDDKELFISTSIGI 521 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS 718 A +L +A++A+Y AK +G N F + +R ++ L A N Sbjct: 522 ALSPGDGDDGDTLLTHADMALYAAKEQGRNAFSFFSEELNREARERRHLEGSLHRAFAND 581 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 E +L Y P I L I EAL++W HP+ G I + F+ +AEE +I+ + ++L Sbjct: 582 EFFLEYQPQIELRSGRIFSFEALVRWQHPEDGLIYPNRFIPVAEETGLIRRLGEWVLRTA 641 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 W+ Q +PP+ + +N++ + + ++ +T P ++L +ES +M Sbjct: 642 CLQCRQWQ-QPGLPPVRVAVNVSGHQFNQPGFIDMVDRVLEETELDPELLELELTESSLM 700 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896 + S + L L+ GI L +DDFGT S LSYL + P D +K + S + Sbjct: 701 AGAQESIMTLIDLKVRGIHLAIDDFGTGYSSLSYLKHFPLDRLKIDRSFVRDIVKDLDDR 760 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 AI+ +II MA ++ ++A+ + E +++ L GCD +Q + A PL ++ + LK R Sbjct: 761 AIVEAIIAMAHSLGLRVLAEGVEHEDELELLKERGCDEVQGFYFAHPLLPAAVEENLKVR 820 >gi|189352742|ref|YP_001948369.1| signal transduction GGDEF/EAL domain protein [Burkholderia multivorans ATCC 17616] gi|189336764|dbj|BAG45833.1| signal transduction GGDEF/EAL domain protein [Burkholderia multivorans ATCC 17616] Length = 749 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 132/567 (23%), Positives = 249/567 (43%), Gaps = 13/567 (2%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--W 452 +Q + E L V + + + + P +L A G + G + Sbjct: 181 RIAQQLARSEEHHRLVVNSLNEGILVVSRDGVVIASNPSANRML-RAKGELVGRRMSTVI 239 Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDI 509 L + + + + L Y AD W+ P+ + Sbjct: 240 LRKLSEDGTPIAPSRWPSRRALTSGTPVLDYTVGFGLADGDVIWVRGNAVPIVKPGDTQA 299 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTV 568 + +DI +++ + + A +D LTG+ NR+ DR+ + R + Sbjct: 300 ASVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAI 359 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+ +KK+ND G GD +L S+ R+ ++ L R+ G+ F I++ ++ Sbjct: 360 LFLDLVGFKKVNDTAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPE 419 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 +A A + +IA P + E + SIG + ++ +++NA+ AMY AK RG Sbjct: 420 ALAALAREVIDAIAKPFAVANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRG 479 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 NH F + I++ L A+ ++ L L Y P++ VG EAL++W Sbjct: 480 RNHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARTGRTVGAEALLRWTS 539 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ + Sbjct: 540 PELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQFH 598 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L E + +++T P ++L +E V+M + +L L ++ + +++DDFGT Sbjct: 599 D-GLVESVSRCLAQTRLDPGALELEITEGVLMNDTATVLPMLEALTEMNVRISVDDFGTG 657 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + E Sbjct: 658 YSSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGMKVTAEGVETEAQS 717 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951 L ++GCD Q + PL + Sbjct: 718 WFLQQIGCDMQQGYLFSRPLDPVDYAR 744 >gi|307293301|ref|ZP_07573147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] gi|306881367|gb|EFN12583.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] Length = 840 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 129/574 (22%), Positives = 247/574 (43%), Gaps = 10/574 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + ++ + A + + ER LAV + +WD+D V T + + ++LGL+ Sbjct: 266 YGTLEDIHAQKLAQRELADSEERFRLAVQSARLGIWDFDAVAGTRTWSQEFRSMLGLSDT 325 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAAD-NQFHWMIIRIRP 501 L +H DR +LD+ R + R+ AD W+ Sbjct: 326 E-PATSELALKLVHPEDRPRLAVMLDAVASERMPPHFEATLRIYRADTGALRWIKSVGWR 384 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + +G LR I D+TE++ S + I A D +T +PNR + L + + + Sbjct: 385 SFSDSGRPLRVIVTFQDVTEERDSEDRIRWAATHDPMTRMPNRALWQATLEEMTEQARRR 444 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + ++++DID K+ ND+LG GD +L +R ++ RL G+ FG+I Sbjct: 445 GD-SFGLILVDIDDLKRTNDMLGHDAGDALLCGFAQRFAACAPADAMVGRLGGDEFGMIA 503 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 S + + ++ + + P R + SIG A + ++E+LK A+LA+ Sbjct: 504 PSLTSGAALTVWSAELLGGVRTPYVHNGRSLDCGISIGGAVFGEHGDNAAELLKAADLAL 563 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y +K G + F+ + + A+ + + Y P + I+G E Sbjct: 564 YASKSSGRGRLTLFQSQLRAEAQQRSSMIHMARQAIADDLVVPHYQPKADMKTGRILGYE 623 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP+ G + + + + ML ++ RD+ W P + IN Sbjct: 624 ALLRWEHPRTGVHAPDTIAAAFDNAEIAVELTEIMLAKVVRDVDRWLRSGYDPG-RVAIN 682 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858 ++ D + ++ + + A +++ P R ++ +E+V +G E+ L RL G+ + Sbjct: 683 ASAADFMQHDFADHVLAHLARYAVPPQRFEIEVTETVFLGRGAEQVERALHRLSAAGVRI 742 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 LDDFGT + LS+L P D +K + S ++ I+ +I+ + ++ ++A+ Sbjct: 743 ALDDFGTGYASLSHLKQYPVDVLKIDRSFISNIERDAGDAVIVDAIVNLGNSLGMEVVAE 802 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + L GC Q + P + ++ Sbjct: 803 GVETAGQADLLIARGCVIGQGYLMGRPRPWAAVR 836 Score = 95.0 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 3/148 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + ++ + + + +V S + W + P + G+ Sbjct: 137 TVEDVDERYDRDRRALADALAESRQHYRWSVELSPQVPWTAAPDGEVEEIGPRWRDLTGI 196 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G W+ +H +D + +I V + ++R+R D + WM R Sbjct: 197 DPEQAKGS--GWIDSLHPDDVERTTSIWMEKVR-SGDPVDVDYRLRLVDGSYRWMRSRAS 253 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ G I+R+ G DI QK + Sbjct: 254 ARRDAKGRIVRWYGTLEDIHAQKLAQRE 281 >gi|218532694|ref|YP_002423510.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacterium chloromethanicum CM4] gi|218524997|gb|ACK85582.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylobacterium chloromethanicum CM4] Length = 1423 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 140/585 (23%), Positives = 265/585 (45%), Gaps = 19/585 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + + + ER LA+ + W+ ++ R T + + + G+ S Sbjct: 852 VGAMRDITEQRRADSALRASEERLRLALHAGRMVAWERNLRTGRTTRSENSLDLFGIGS- 910 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G +L +H +DR ++ R R EFR D + W+ Sbjct: 911 ---GSASQFLDRVHPDDRGRTERLVQQGSQRREQR---EFRYIHPDGRLIWL-ASAVERV 963 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +++ R +GI DITE+K + E A D LTG+PNR+ F RL L + Sbjct: 964 DAD----RLVGITFDITERKCAEEQAWRAANHDALTGLPNRRLFRQRLEQALTSA-ECGG 1018 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +++++D+D + +ND LG GD VL+ + +R+ + L+ D +ARL G+ F ++L Sbjct: 1019 ASVSLLLLDLDHLRDVNDTLGHDAGDTVLMEVAQRLQDGLRATDTVARLGGDEFALLLAE 1078 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + A A+ + + P ++ ASIG A++ S E++K+A++A+YH Sbjct: 1079 PMRMDQAVIHARALIERLRQPFCHRGHMLSCKASIGLAAYPDHHHESHELMKDADIALYH 1138 Query: 684 AKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N V F I ++ AV + Y P + IVG EAL Sbjct: 1139 AKAKGRNGVVVFAPEMRAETERRVQIASEVQTAVVAGHIVPFYQPKVCFSTGAIVGFEAL 1198 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 +W HP+ G ++ F ++ + AI +L ++A D+ W+++ P + +N + Sbjct: 1199 ARWQHPERGLLTPGYFGSAFDDPELATAIGESILRQVACDLREWQERGLAPG-RVAVNFS 1257 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTL 860 S + +L + ++ + + ++ +E+V +GN E L +L+ G+ +TL Sbjct: 1258 SAEFRKADLAATILIVLDEYDVPANLFEVEVTETVFLGNGTENVPATLQQLQDAGVLITL 1317 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918 DDFGT + L++L P +K + S + + AI+ +++ + ++++ + A+ + Sbjct: 1318 DDFGTGFASLTHLKQFPVGHLKVDQSFVRNMEQDKGDAAIVAAVVGLGRSLDMKVTAEGV 1377 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 L MGCDY Q + P+ + + L+ + Sbjct: 1378 ETAGQAIRLREMGCDYAQGYRYSKPMASSRVPWFLRNWNSEAVRS 1422 Score = 268 bits (685), Expect = 3e-69, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 131/316 (41%), Gaps = 4/316 (1%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 L + L + D + D+ +P ++ +LG + G Sbjct: 156 LRLSKAERNARESAADYRLLADNTNDTIIRSDLDGTLRYVSPAVSRLLGYEPHELFGT-- 213 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDI 509 + L +H ++ + +L+ + + + R R D + W+ I G+ Sbjct: 214 HPLASVHPDEASGYGQLLEQIGTGQISKAVTQQRYRRRDGTYVWVEISFNLTREEESGEP 273 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 Y+ + D++++K + + A D LTG+PNR F ++L + + + ++ Sbjct: 274 NGYVAVIRDVSQRKAAESEMAHIARHDPLTGLPNRLHFREQLEQEIRRTKRTGST-FALL 332 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K +ND LG GD +L + +RI +L+ D ++RL G+ F II + + Sbjct: 333 CLDLDRFKLVNDSLGHQAGDQLLKVVAQRIRSVLRTEDTVSRLGGDEFVIIQTNCARAED 392 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + ++ P++L + SIG A + + A+ A+Y AK G Sbjct: 393 ASRLAERLIAAMLPPVDLGGYPAGIGVSIGIALAPRDGLDHDHLYARADQALYRAKDAGR 452 Query: 690 NHVESFRVSSFRSDRV 705 N + R+ Sbjct: 453 NTFRLYAEEEVGCSRM 468 Score = 131 bits (331), Expect = 4e-28, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 6/154 (3%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + ++ I ER LA+L + D +WD DI D +T + + G + + Sbjct: 727 SDIHESKQATEAIRLQEERYRLAMLATQDAIWDHDITSDTITWSEGAHPLFGYSDAGIAS 786 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 W IH +DRD L F+ R R E+R AD + +I R + ++ Sbjct: 787 TGAWWRSKIHPDDRDRVTASLKEFIDGRESRWSEEYRFARADGSYAAVIDRGFVIRDAEA 846 Query: 508 DILRYIGIANDITEQKKSL------EGILCNAFQ 535 +R +G DITEQ+++ E L A Sbjct: 847 QAVRAVGAMRDITEQRRADSALRASEERLRLALH 880 Score = 95.8 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 66/420 (15%), Positives = 134/420 (31%), Gaps = 33/420 (7%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + + + A + + R + S +VW + + G + Sbjct: 596 LILAISRDITAQVELESDLQTTASRYKALIEASATMVWRATSDGSLIE-SSGWEAYTGQS 654 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G WL +H +D + R +EFR AD + W + R P Sbjct: 655 ESAYSGH--GWLNTVHPDDLHRVTSTWHEIFASRTAG-SFEFRALCADGTYRWTLTRATP 711 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + ++ G + ++G +DI E K++ E I + R + L I D T Sbjct: 712 LKDTAGQVQEWVGTDSDIHESKQATEAIRLQEER------Y-RLAMLATQDAIWDHDITS 764 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN--RFGI 619 D + + + + + G + D + S + D R++ + F Sbjct: 765 DTITWS---------EGAHPLFGYS--DAGIASTGAWWRSKIHPDDR-DRVTASLKEFID 812 Query: 620 ILISENNSL-KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 S + + A + I + + E ++G + + + L+ +E Sbjct: 813 GRESRWSEEYRFARADGSYAAVIDRGFVIRDAEAQAVRAVGAMRDITEQRRADSALRASE 872 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIV 736 + A H G + + R+ R DL S+ HP R E +V Sbjct: 873 ERLRLALHAGRMVAWERNLRTGRTTRSENSLDLFGIGSGSASQFLDRVHPDDRGRTERLV 932 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAE-----ELCMIKAINLFMLERIARDIISWRDQANM 791 + + + +A + + I + ER + +WR + Sbjct: 933 QQGSQRREQREFRYIHPDGRLIWLASAVERVDADRLVGITFDITERKCAEEQAWRAANHD 992 >gi|253996206|ref|YP_003048270.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253982885|gb|ACT47743.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 834 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 134/575 (23%), Positives = 257/575 (44%), Gaps = 12/575 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445 + + + + V + +D+ R+ + + Sbjct: 261 ARDISEKQHLVSEVTKQRNAYQSLVQNLPTTIIRYDLDGKRIFVNSRCFETYNIEVPYEL 320 Query: 446 HGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + W +++ + +++ + L E D + +RI P Sbjct: 321 NKTPLEWWSPYIVNVTGAEFMTQLMEVMQFNVQKTL--EIHSMHED-KVAVHQLRIVPEF 377 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + + IA DITE + I AF D LTG+PNR F +L+ +D + T+ N Sbjct: 378 DEVHQVCGALTIATDITEVAEYRRKIESMAFHDQLTGLPNRTLFSQQLSVAIDQAKTN-N 436 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++++D+D++K IND +G A+GD +L+ + RRI L ARL G+ F I++ S Sbjct: 437 SQFALIILDLDQFKSINDTMGHAIGDKLLIEVARRITNSLDQHCTCARLGGDEFIILVES 496 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + + + I + E ++ASIG A + ++LK A+ AMYH Sbjct: 497 VPSREHVEYVSNVLLNQIMQVYVIDGSEYFISASIGIAYFPDDSEDMDDLLKYADSAMYH 556 Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N ++ + S + + + +L A+EN E+YL Y PI+ + ++ GLE+L Sbjct: 557 AKKGGRNRYHTYSPAITESIQHRLNVETELRRAIENDEIYLEYQPIVDMTSNQVKGLESL 616 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 +W K G +S F+ IAEE MI + +++ + + P+ + +N++ Sbjct: 617 CRWHSRKLGIVSPMVFIQIAEETGMIVELGQWIMREAFK-AARLLNAQLKHPVSVSVNLS 675 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ + +L ++ L+ + +P+ IK +ES+++ + + L +GI ++LD Sbjct: 676 ARQFFEVDLIHQVRHLLKEQQCNPAWIKFEITESLLLESNQSVLNALNAFNDLGIKVSLD 735 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P VK + S + ++++II + + +IA+ + Sbjct: 736 DFGTGQSALAYLSKFPIHQVKIDYSFVKEITSNPNDALLVKAIIALTATLNKELIAEGVE 795 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 L GC Y Q + P+ ++ + L+ Sbjct: 796 TSAQATLLQSYGCRYAQGYLYSKPISLQAVQQYLE 830 Score = 46.9 bits (110), Expect = 0.020, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 54/183 (29%), Gaps = 5/183 (2%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 I A R+ D++ + + V+ + +Q + Sbjct: 99 LINFEHASLSRVIYDLVHFSAIKNQQNQVVGVIAVGRDLDFNKQQKNQETVQREQYLRAL 158 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILD 469 + IVW D + T ++G + G + D Sbjct: 159 MDTFPFIVWMKDKSGRFMATNRKFVEVVGAKHYEDLEGKTDFDFF---PTEMAQGYACDD 215 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + +++ + +W P+ +G ++ +G A DI+E++ + + Sbjct: 216 EEILKTGVPKSFNEQIKKETGEIYWAETYKSPVQ-LDGQVIGTVGFARDISEKQHLVSEV 274 Query: 530 LCN 532 Sbjct: 275 TKQ 277 >gi|226228483|ref|YP_002762589.1| hypothetical protein GAU_3077 [Gemmatimonas aurantiaca T-27] gi|226091674|dbj|BAH40119.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 556 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 144/544 (26%), Positives = 253/544 (46%), Gaps = 23/544 (4%) Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 V A ++G G+ R ++H +D + L G + ++ Sbjct: 13 NGRLVYANEAAAHLIGARQGADILRRRA-SDFVHPDDLALVQQRL------TSGPARVQY 65 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R+R D+ + + G + D+TE+K+ +L AF D LTG+ N Sbjct: 66 RLRRLDDGIREVEA-VSVSIAFEGTPA-MQTLFRDVTERKELEARLLHGAFHDALTGLAN 123 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R F DRL L ++ D + R V+ +D+D +K +ND LG GD +L +++ RI + Sbjct: 124 RALFRDRLEHALQVAGRDPDHRIAVLFLDLDDFKGVNDSLGHDAGDQLLRTVSERIMAEV 183 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 + D +AR G+ F ++L + ++ ++ P+ L R ++V S+G A Sbjct: 184 RASDTVARFGGDEFAVLLERLPTESEALTIVNRIKVALRRPLMLEGRLMSVATSVGVAYA 243 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL---AVENS 718 T +L+NA++AMY AK G F S + R+ ++ D+ + A E S Sbjct: 244 TP-ADDVDTLLRNADVAMYEAKEAGKARHAVFEPSMYAAIVQRLQLEADIRMAAGAPERS 302 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 L+L Y PI+ L + GLEAL++WDHP G ++ S F+ +AE +I + ++LE+ Sbjct: 303 GLFLAYQPIVDLRTGAVRGLEALLRWDHPTRGTVTPSVFVPVAEHTGVIVPLGRWVLEQA 362 Query: 779 ARDIISWR------DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 +++WR + + +NI+ + L + + + + A++ +T I L Sbjct: 363 CTQLMAWRTQWWRERRQPDSVPSVSVNISGRQLAEEDFVDEVAAILQRTGAPAGSITLEI 422 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892 +ESV+M N E S L L+ +G+ L +DDFGT S LSYL P D +K + + + G Sbjct: 423 TESVIMRNTESSLRTLSALKALGLRLAIDDFGTGYSSLSYLQKFPVDVLKIDRAFVEGVA 482 Query: 893 E--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + A+ R+I+ + + +A+ + + L MGC Q + + I Sbjct: 483 QGGSDAALARTIVTLGTTLGLRTVAEGVETSSQQEALEAMGCVDGQGYLFSPARPVDEIT 542 Query: 951 KLLK 954 L+ Sbjct: 543 AWLR 546 >gi|121998494|ref|YP_001003281.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Halorhodospira halophila SL1] gi|121589899|gb|ABM62479.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halorhodospira halophila SL1] Length = 749 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 141/567 (24%), Positives = 245/567 (43%), Gaps = 19/567 (3%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E+ +A +GD + D T I G G G L Sbjct: 182 ERRRSEEQLRIAARVFEDAGDAIVVTDPDGHVQTINNAFTRITGYTEGEALGNTVCAL-- 239 Query: 456 IHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D R G Q E R + + + I + ++ G + Sbjct: 240 ---LDSGRHSEAFHKEKQESLDRSGYWQGEIWHRRKGGELYPEWLTINRIDDATGQPQHF 296 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + +DIT+ K + A D LTG+PNR F DRL + + + + +M +D Sbjct: 297 VAVFSDITQLKDAHSRSEYLANHDPLTGLPNRSLFQDRLQQAIAQTQRHEG-QVGLMFLD 355 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K IND LG VGD++LV + R+GEL++ D +AR+ G+ F ++L + ++ Sbjct: 356 LDHFKTINDTLGHEVGDELLVQVAERLGELVRDVDTVARIGGDEFTVVLTDC-DPEEVGS 414 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + + + RE+ T S G A + + K A++AMY AK G N + Sbjct: 415 IAQRLVEGLGGTFVVDGRELQATPSAGLALYPRDGEDVHTLCKAADMAMYRAKEDGRNRL 474 Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKW 749 ++E L A+ EL LVY P D +VG EAL++W P Sbjct: 475 RLCESGLHQRLLKDTALEEALRRALTQGELRLVYQPQFDASDPGRVVGAEALLRWHDPAS 534 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS F+ IAE +I ++ + E + + +W + PP I N+++K Sbjct: 535 GPISPGRFIPIAERSDLILELDRRVEELLCEQLNTW-SAGHAPPAPISFNVSAKSFRQGH 593 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + ++S+ + ++++ F+E + + RL + GI+L +DDFGT + Sbjct: 594 WTKRLFRILSRYGVAAEQLQVEFAEGTLSERAGVVPEEIRRLHEGGIALAIDDFGTGFTS 653 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L L +P +K + S + G E AI+R+ + +A+ + +A+ + + + L Sbjct: 654 LVNLKQLPLAELKIDQSFVAGLGQDEDAEAIVRASLAVAEAMGLRTVAEGVETQRQLTWL 713 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954 GC IQ S +++PL L++ Sbjct: 714 QEQGCQRIQGSLLSAPLEAEDFEALIR 740 Score = 48.4 bits (114), Expect = 0.006, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 46/168 (27%), Gaps = 4/168 (2%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 A LV + L + + + +R + D Sbjct: 32 WSRADTQSLVAELELHQQELRIQNEELQQARDRLETALDRYHDLFQRAPVGYLLLDDEGR 91 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 A +L G + G + + + D + + R E + Sbjct: 92 IWEANRAAADLLA-PGGDLTGQLLSDFVAVDAQD---ALYLHWRALTAARAPQAVELTLA 147 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 A+ + + ++ R+ DITE+++S E + A Sbjct: 148 WAEGASCAVRMESSVEPTADRSPCRFRCALMDITERRRSEEQLRIAAR 195 >gi|163852193|ref|YP_001640236.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163663798|gb|ABY31165.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 954 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 131/572 (22%), Positives = 248/572 (43%), Gaps = 27/572 (4%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454 + + A+ + +D + + G+ + ++ IR+ Sbjct: 391 EDQLKRSNAQLDAALSNMLQGLCLYDAEGGLLVYNRRFCDMFGVDAAALRPGMSIRDVAR 450 Query: 455 YIHIN-DRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + D +L + R +R I + Sbjct: 451 LVEASSDNGRAIDLLVEQEALLQRGLSASLCCPIRT---------DCIVALKQQPTAEGG 501 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 +I D+T++ ++ I+ A +D LTG+ NR F +RL + + Sbjct: 502 WIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAARLDDGAGAGFATLCL 561 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----S 627 D+D++K++ND LG +GD +L S+ R+ L+ D++ARL G+ F I+ Sbjct: 562 DLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHAR 621 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + + P L +TV SIG + + ++LK+A+LA+Y AK Sbjct: 622 RDASALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKAT 681 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G F R ++ DL AV N E LV+ PI++L + I EAL++W Sbjct: 682 GRGCWAFFDEEMDVELRKRRALESDLKKAVGNGEFELVFQPIVKLDRQRIASCEALLRWR 741 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G +S ++F+ +AEE I I ++L + + +W I + +N+++ Sbjct: 742 HPERGYVSPADFIPLAEETGTIGEIGEWVLRKACSEAATWPS-----NIRVAVNVSAAQF 796 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + + ++ + R++L +ESV++ + + L L+++G+ + +DDFGT Sbjct: 797 KNAAVVRAVMDALAASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGT 856 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PFD +K + S + I+RS++ + +++ T A+ I E Sbjct: 857 GFSSLSYLQSFPFDKIKIDQSFVRNLAAPGNSRLIVRSVVGLGRSLGITTTAEGIETEAQ 916 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +++L GCD Q + P+ +I +L+ Sbjct: 917 LEQLRLEGCDEGQGYLFSRPVPSATIRELVTA 948 >gi|146284223|ref|YP_001174376.1| putative sensory box/GGDEF family protein [Pseudomonas stutzeri A1501] gi|145572428|gb|ABP81534.1| putative sensory box/GGDEF family protein [Pseudomonas stutzeri A1501] Length = 751 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 139/594 (23%), Positives = 256/594 (43%), Gaps = 32/594 (5%) Query: 379 VILIGFTVIQHVLATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 ++ I F + + T +Q + R + A+ GS D +W+W++ D++ + Sbjct: 146 LLKIVFFDMILAIDTYSAAQRHALEDSEARLTRALRGSEDGIWEWNVEHDQLHLSERWTA 205 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 +LG+ R+W +H +D R + + R L +E+RVR + W++ Sbjct: 206 MLGM-PAQPSYTSRSWFERVHPDDLPGLREAIADHLNGRTPSLAHEYRVRIEGGDYLWVL 264 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 +R G LR G DI+ +K + E + A D LTG+ NR + L + Sbjct: 265 VRGVAERCEQG-TLRMAGSQTDISARKAAEECLRHAARHDALTGLANRLHLDELLKEV-- 321 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 ++ +D+D++K IND LG GD VLV + +R+ L+ D LAR G+ Sbjct: 322 -QQRPHGRATALLFVDLDRFKLINDSLGHGAGDQVLVEVAQRLLRCLRPGDHLARFGGDE 380 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +L A M ++ P+ L ER ++V+ASIG A + + + Sbjct: 381 FVALLGDLACEADAERVAQRMLVALRQPLQLGERTLSVSASIGIAPLQRDGQALNAL-QA 439 Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LA+Y AK G + F S + ++ ++ L A+ E L Y PI R+ Sbjct: 440 ADLALYRAKSAGKDQFALFCDGLHSKAARQLELESALAQALTRREFALHYQPICRVEQGR 499 Query: 735 --IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +VG+EAL++W ++ EF+ + EE I + ++L + W+ Sbjct: 500 PYVVGVEALLRWRFND-KPVAPHEFIPVLEESREIVRVGEWVLREACCQVRRWQQA-GQT 557 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES--------VVMGNPERS 844 ++ +N++ + L + + ++ +T P S ++M + E + Sbjct: 558 QLYCAVNLSIRQLQQPGFTDLLARVLRETGLRPD--------SLLLEITETLLMQDSEAT 609 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902 L + +G+ L LDDFGT L YL P +K + S + +AI R++ Sbjct: 610 MSSLHEIAALGVRLALDDFGTGYCSLGYLKRYPLHVLKVDRSFIAAAPDDPDSVAISRAV 669 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I + +++ ++A+ + + L GC +Q + P + ++ Sbjct: 670 IGLGQSLGLAVVAEGVERPEQVAFLGAEGCQLVQGYWFSPPRSAAELQRMFDRE 723 >gi|118589369|ref|ZP_01546775.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614] gi|118438069|gb|EAV44704.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614] Length = 830 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 154/743 (20%), Positives = 299/743 (40%), Gaps = 36/743 (4%) Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 + + + L+ + L + A S + + L+ HA + Sbjct: 88 VLVITITFRSFMPMSLLALWIAAIGTFLSLTLFKWLKARKSPVQLASRRSLNKAVTHATI 147 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP 342 + F + AS + + + + Sbjct: 148 --FSSLWAVVPVAAFAYGDADGIWIASCLTTGMLCGGAFALATVPQAAFR---------- 195 Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG-IF 401 W+ + + AI ++ + +V++ + A+ + ++ + Sbjct: 196 -WVSVLFVASLMSFAIG--RSAELWPLFFLLTSYTLVVIGSIASAAWLFASHFLAEAELE 252 Query: 402 SDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-I 456 GE +L + S D +W D + + G S + L Y + Sbjct: 253 HRGELIALLLNEFEEKSSDWLWKTDSHGILHSISDRFLHASGRQSAELETMRMVDLAYSL 312 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + T L++ + ++ + V + W + RP+ + +G Y G+A Sbjct: 313 DESDARSAVTKLENAMKRQQAFREIVIGV-DVKGEERWWSLAARPVYDDHGSFTGYHGVA 371 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE ++ + A D+LTGI NR FL + L+ + T+ +ID+D + Sbjct: 372 SDITEAHRASALVSHLAEHDSLTGIGNRSWFLKQAEAQLEEQNQNGQNTLTLFLIDLDNF 431 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G GD++L + R L + +LAR G+ F + ++ FA Sbjct: 432 KVVNDTSGHPAGDELLRQVASRFTALGEGRTMLARFGGDEFAALGRFVSD-QAALAFAEE 490 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P + R+ + A++GF SK T ++++ A++A+Y AK G +F Sbjct: 491 LVAVTRKPFRIGRRDFAIGATVGFTRLHDSKDTVDDLMRKADIALYKAKEGGRGRSLAFE 550 Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R R + DL A E +L + + PI+ ++V E L++W HP G + Sbjct: 551 QDMEREVRERRELESDLREAFEYGKLNVDFQPIVDARSGKVVSSEVLVRWLHPVRGEVRP 610 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAE +I + ++L++ + + +N++ +D L E + Sbjct: 611 DVFIPIAEHAGLILPLGSWVLKKACAAAAQCPELE-----SVAVNLSPVQFMDPNLVEQI 665 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ +T + P R+ L +ESV + + + + L +LR +GI + LDDFGT S LSYL Sbjct: 666 LGVLQETGFPPERLVLEITESVFLRDFGTASIKLQKLRDLGIRIALDDFGTGYSSLSYLR 725 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 + FD +K + S + E +AI+ ++I +A N+ + A+ + + + L +GC Sbjct: 726 HYKFDKIKIDKSFVDEIGERSDGLAIISAVIALAHNLGLEVTAEGVERQFQVDALRTLGC 785 Query: 933 DYIQDSHVAS----PLGFNSILK 951 D +Q + P+ I + Sbjct: 786 DTMQGYYFGKPDPNPMRVAQIRR 808 >gi|240138817|ref|YP_002963292.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS sensor [Methylobacterium extorquens AM1] gi|240008789|gb|ACS40015.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS sensor [Methylobacterium extorquens AM1] Length = 777 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 144/549 (26%), Positives = 246/549 (44%), Gaps = 29/549 (5%) Query: 407 QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + +W D V G + + Sbjct: 242 FRFLFESNPLPMWLVDQDSARFVAVNEAAVAHYGYSREAF---------------LARGL 286 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L V + R R R AD + + R ++ G +G A D+TEQ+++ Sbjct: 287 QDLSEAVAFSFARDGRLHRHRRADGSLIDVTLFERSLAFE-GRPA-VLGAAIDVTEQRRA 344 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 I A D LTG+PNR F RL ++ A ++ +D+DK+K +ND LG Sbjct: 345 EARITHMAHHDALTGLPNRALFTTRLAEVIAEHART-GAGAALLCLDLDKFKLVNDTLGH 403 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD +L ++ RI L D++ARL G+ F ++L + ++ A + ++++ P+ Sbjct: 404 PAGDTLLRAVADRITACLHGEDLVARLGGDEFAVLLR-TPYAGTVSAVAGRIIEALSHPV 462 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 L +RE + S+G A S +L++A+LA+Y AK GG F + DR Sbjct: 463 RLGDRECQIGVSVGIACLPEHGTDSDTLLRHADLALYRAKADGGCIAHYFEAAMDSWDRS 522 Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + DL A +L L Y P++ + IVG EAL++W HP G I SEF+ +AEE Sbjct: 523 RRRREADLHEAFARGDLALAYQPVVGVRSRAIVGFEALLRWHHPVEGAIPPSEFVPLAEE 582 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I I ++L + + W D P+ I +N++ D L ++ ++ + Sbjct: 583 TGLIVPIGAWVLRQACAEASLWAD-----PVRIAVNLSPVQFRDPGLVATVREALALSGL 637 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 +P R++L +ESV++ E + L LR +G+ + +DDFGT LSYL PFD +K Sbjct: 638 APHRLELEVTESVLLAASEANVATLHALRDLGVRIAMDDFGTGYCSLSYLQKFPFDKIKI 697 Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S ++ G AI++++I + ++ +A+ + E+ L GC+ +Q Sbjct: 698 DRSFVSRLGEDPHSTAIVQAVIGLGASLGIVTVAEGVETEVQFAHLRAEGCEEVQGYLFG 757 Query: 942 SPLGFNSIL 950 P+ + Sbjct: 758 RPIPAPQAV 766 >gi|218230789|ref|YP_002368334.1| sensory box/GGDEF family protein [Bacillus cereus B4264] gi|218158746|gb|ACK58738.1| sensory box/GGDEF family protein [Bacillus cereus B4264] Length = 828 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 164/759 (21%), Positives = 309/759 (40%), Gaps = 30/759 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 81 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 137 YLYFYLQDDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ E I AF D +T I NR F L + + Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND L ++GD VL + +R L LAR+ G+ F Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLSHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 663 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + M + I + + I L +E + M + + L L+ G+ Sbjct: 664 GINLSAIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMVDERETLSKLKALKSFGV 723 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+ + + + L R C IQ + + P+ + + L Sbjct: 784 AEGVETKEQLTVLQRNVCYLIQGYYYSKPVNEDEFMDFL 822 >gi|78062868|ref|YP_372776.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia sp. 383] gi|77970753|gb|ABB12132.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia sp. 383] Length = 749 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 132/568 (23%), Positives = 246/568 (43%), Gaps = 11/568 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-L 453 ++ + E L V + + V + P ++ + + + L Sbjct: 181 RIARQLARSEEHHRLVVNSLHEGILVVSRDGVVVASNPSANRMMRVKGDLVGRRLSTVIL 240 Query: 454 PYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL- 510 +H + + L Y AD W+ P+ + Sbjct: 241 RKLHEDGTPIAPDEWPSRRALETATPLLDYTVGFGLADGDIIWVRGNAVPIVRPGEKLAD 300 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPTVM 569 I NDI +++ + + A +D LTG+ NR+ DR+ + R ++ Sbjct: 301 SVIVSFNDIGPVREAQQQLRYLATRDALTGLYNRRWLGDRMRELFGGHDAAGGPARVAIL 360 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ID+ +KK+ND G GD +L S+ R+ L R+ G+ F I++ ++ + Sbjct: 361 FIDLVGFKKVNDTAGHDAGDALLRSVAARLAACGGGQYALTRVGGDEFVILVDDCDDPDR 420 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +A A + +IA P + E + SIG + + +++NA+ AMY AK RG Sbjct: 421 LAVLAREVIDAIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDAKQRGR 480 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 NH F + I++ L A+ + L L Y P++ VG EAL++W P Sbjct: 481 NHFTFFTAQLNLRLQRRFAIEQSLRRALSSDMLRLAYQPVVDARSGRTVGAEALLRWTSP 540 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ + Sbjct: 541 ELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQF-H 598 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L E + +++T PS ++L +E ++M + + +L L + + +++DDFGT Sbjct: 599 EGLVESVDRCLAQTQLDPSALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDDFGTGY 658 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + + Sbjct: 659 SSLAYLKRFPLHNLKVDRSFVSGVPDHHDSVAITQAVVAMAHSLGMKVTAEGVETQAQSW 718 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 L ++GCD Q + PL N + L Sbjct: 719 FLQQIGCDMQQGYLFSRPLDPNDYARRL 746 >gi|260223174|emb|CBA33472.1| hypothetical protein Csp_B19230 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 886 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 143/566 (25%), Positives = 260/566 (45%), Gaps = 19/566 (3%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + ER S D W+ D V + G+ S + Sbjct: 322 ALAQLQESEERFRSLSSLSSDWYWEQDAEFRFVRIDGN-----GINSDRLAPQGALGRTR 376 Query: 456 IHINDRDNFRTILDSF---VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 R + + + +E + +D F W+ I P+ ++ G Y Sbjct: 377 WDSGGRGVTPAQWKAHQDLLEAHQTFQDFEMQRVLSDGSFMWVSISGAPIFDAQGKFCGY 436 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 G DI+ +K + I AF D LTG+PNR+ +DRL LD S + ++ ID Sbjct: 437 RGTGRDISARKAAEAEIERLAFFDALTGLPNRRMLIDRLKHALDSSTRNRQ-HGALLFID 495 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----S 627 +D +K +ND LG +GD +L + +R+ + ++ D +ARL G+ F ++L + + Sbjct: 496 LDNFKVLNDTLGHHMGDLLLQQVAQRLQDCVRSADTVARLGGDEFVVMLEELDADPLLAA 555 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + S+ + + + SIG + + E+LK A+LAMY AK Sbjct: 556 TQAELVAKKVLGSLNKQFAMGNHNMHSSPSIGVTLFFQHNDSIEELLKRADLAMYQAKGA 615 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F S+R ++ DL A++ + L Y P++ + G+EAL++W Sbjct: 616 GRNTLRFFDPDMQAAASERADMEADLRRALQEEQFTLYYQPVVDQA-GTVTGVEALLRWL 674 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G +S + F+ +AE+ +I + ++LE +++W D + + I +N++++ Sbjct: 675 HPLRGMVSPAVFIPVAEQTGLILPLGQWVLEAACAQLVAWNDDSQTQKLSIAVNVSARQF 734 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + L+ + +P R+KL +ES+++ + E + + +G LR IG+S +LDDFGT Sbjct: 735 RHPDFSTHILDLLRTSGANPYRLKLELTESLLLTDFEEAVIKMGELRSIGVSFSLDDFGT 794 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL +P D +K + S + + AI R+I+ +AK+++ ++A+ + Sbjct: 795 GYSSLAYLKRLPLDQLKIDQSFVRDVLTDPNDAAIARTILNLAKSLDLGVVAEGVETAGQ 854 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSI 949 L R GC Q P+ + Sbjct: 855 RDFLLREGCRAFQGYFFGRPVPVEQL 880 Score = 61.1 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 6/154 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIAT 436 L F V+Q + + + + +V+++ D + +A Sbjct: 176 LADFGVVQEFTEERDARDALQTQLDFIHKITSRAPGMVYEFQMWPDGQFKFPFVSAGVAQ 235 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + G++ + IH D + + EFR R A W++ Sbjct: 236 LFGVSMEQAREDANALMRRIHREDVPRIIKTSLASRDTLQ-PWNCEFRTRDAGADMRWLL 294 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 P +G +L + G DIT QKK+L + Sbjct: 295 GTSVPEIKPDGSVL-FTGSITDITPQKKALAQLQ 327 Score = 53.0 bits (126), Expect = 3e-04, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 7/141 (4%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A + ++ + + L + W DRV + +A + GL + Sbjct: 65 ALEHANETMNRQVKLHELTESVAKVGHWVSYPDDDRVQLSRGLALMAGLGDVPLATNQSL 124 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W +H D + R EFR + + + W R+ + G +L Sbjct: 125 WGS-VHPEDLPRLKEA-----RIRMDGSVVEFRWLSKEGRTLWARSRMHRQM-AEGRVLA 177 Query: 512 YIGIANDITEQKKSLEGILCN 532 G+ + TE++ + + + Sbjct: 178 DFGVVQEFTEERDARDALQTQ 198 >gi|254788102|ref|YP_003075531.1| motility regulator [Teredinibacter turnerae T7901] gi|237685689|gb|ACR12953.1| motility regulator [Teredinibacter turnerae T7901] Length = 897 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 147/561 (26%), Positives = 255/561 (45%), Gaps = 9/561 (1%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 IQ V + ++ ++ S + D + GL ++ Sbjct: 321 IQDVTSRLQRAEAHLETSQQLSALTHLVPVAILRVDTHWNCAFANDRWYEFSGLTFDEIN 380 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 W+ +H +D L S + L+ E R+ + Q W + + + + Sbjct: 381 QT--GWINALHRDDVKTTLEELRSALKV-GHNLKREVRLVSPVGQVRWTEMNTQVLFDER 437 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G IL ++ DITE+ E + A D+LTG+ NR F DRL S + Sbjct: 438 GAILGFLATFADITERYIHQERLRHVAEYDSLTGLANRYLFQDRLKQAFFNSER-EGSEV 496 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 VM +D+D +K +ND LG AVGD +L + R+ +L+ D +AR G+ F I+L Sbjct: 497 VVMFLDLDGFKIVNDSLGHAVGDKLLKKVGERLLNILRRVDTVARFGGDEFVILLNPHEK 556 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 L +A+ A + +S+A + EI VT+SIG + T+ + +++K A+ A+Y AK Sbjct: 557 QLDVAEVASKIIQSLAQTYQIDGNEICVTSSIGISGGTAKNSSPEKLMKQADAALYLAKS 616 Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N+ + F + + + + A+ + +L Y P+ + +EIVG EALI++ Sbjct: 617 EGKNNFQLFNEALDKEAKKRVFMARQTRSALRHKRFFLEYQPLANISRKEIVGFEALIRF 676 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASK 803 + +F+ I EE I ++++ R + W Q P F+ IN++ K Sbjct: 677 KDEMGRCVYPGDFIAILEESGAIVEAGNWVIDEACRQLSQWHAQQLFPLDGFMSINVSPK 736 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 LD+ L + + + P + + +ESV++ P + + + +L++ GI LDDF Sbjct: 737 QFLDDSLLDSILGSCERHCIRPQCLTIEVTESVLIDKPAKIQRTMSQLKEQGIRFALDDF 796 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL PFD +K + S + E I +SII + K++ T+ A+ + E Sbjct: 797 GTGYSSLTYLQQYPFDHLKIDKSFVANLGSDENSAKITKSIIALGKSMGLTVTAEGVADE 856 Query: 922 IDIKELTRMGCDYIQDSHVAS 942 + L+ G DY Q + Sbjct: 857 PTLNILSAYGADYYQGYFLGR 877 >gi|83643630|ref|YP_432065.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83631673|gb|ABC27640.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 994 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 150/562 (26%), Positives = 270/562 (48%), Gaps = 13/562 (2%) Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 S E+ LA + V+ D +T + I G + + G Sbjct: 424 SRDEQLLLAKSVFDHTPQGVFALDTEFRFLTVNNAFSQITGYETEEVIGSSLEDFSQ-AP 482 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 N R F I D RGR Q E + +F+ ++I + N+ G Y G+ +D Sbjct: 483 NKRQVFSRIRDELF--LRGRWQGELYEKRKSGEFYCQWLQITSIINTEGATTHYAGLFSD 540 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +TE+K++ E + D LTG+ NR F +RL IL + L ++++++D++++ Sbjct: 541 LTERKQADEKLHYLLNYDELTGLANRMLFRERLDKIL-RKVREQGLSINMLLLNVDRFRQ 599 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +N+ LG GD++L + RI + LARL + F IL + +I+ F + Sbjct: 600 VNESLGQDRGDELLKQVATRISQTASHAHTLARLGSDEFA-ILTPAKSRSQISRFCEQLL 658 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P N+ E V+ SIG + +++ A +A+ AK+ GGN E + Sbjct: 659 DELKAPFNIDGHEFYVSTSIGVTQAPDNGWEIQTLMQQANMAVRQAKYLGGNTYEFYSRM 718 Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ + + +L A++N ++ + + P + L I G+EAL +W HP+ G I+ S+ Sbjct: 719 LRSMSRMRLDVETELRRAIQNQQMEVFFQPKLSLDSGRITGVEALARWRHPQRGLIAPSD 778 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I + ML +W + I + +N+++ L + L + ++ Sbjct: 779 FVPMAEESGLITELGEQMLGAACAQAAAWSREGLD-NIQVSVNLSAHQLRQSNLPQMVRK 837 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T P + L +ES +M N R++ +L RLR++G+ +T+DDFGT S LSYL Sbjct: 838 VLQDTELPPHLLDLELTESTLMENMSRTQFMLSRLREMGVRITVDDFGTGYSSLSYLKRF 897 Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P + +K + + + AI R++I + K++ +IA+ + E ++ L GC Sbjct: 898 PLNALKIDRMFIKDAHHNADDAAITRAVIMLGKSLNLEVIAEGVEHEGHLQFLRESGCHT 957 Query: 935 IQDSHVASPLGFNSILKLLKER 956 +Q +A PLG + LL+E+ Sbjct: 958 VQGYLIAEPLGAEQMASLLREQ 979 Score = 95.8 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 62/380 (16%), Positives = 112/380 (29%), Gaps = 51/380 (13%) Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISI--------DFGFLSKLVNLPSGEL 250 A+ L F+T+ ++ S + LG I L + + Sbjct: 50 AAALLFFITMGFVATASPYHAVAPLIGLATLGAICAVLLAVFGSRAQALLQDESANLPRN 109 Query: 251 LIWRACSEIALSSSLIIFL---FMYLHWNRWHAKVGYITFSGIACIAIL-FCMSFYYPMV 306 + + + LS+++ L Y+ + + T + +L F + + Sbjct: 110 VANLSRLYVLLSAAIATVLGPVAAYIILELPSSWLDSATIAQFVAAGLLSFFLGIWRTPF 169 Query: 307 TASIARITLASIVLYY---------TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357 A L VL + Y A L A + + Sbjct: 170 IILSAMPLLWLSVLLSGRSPLPTELMTNAAILSVFLYPLAALWYLASSRYLNQNLQMQGL 229 Query: 358 ITKRLDNDIIQPALVGGLVLIVIL------------------IGFTVIQHVLATGYFSQ- 398 I + L L + I + A SQ Sbjct: 230 IAYLDNARSASEQLNQQLAYEITRREEIEHELRETQKELENAICERTDELSEANRILSQQ 289 Query: 399 ---------GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + R S A+ +G +WDWDI R+ + + G S + Sbjct: 290 IKLRKNISDALMKSQTRLSQAIEATGLALWDWDIPRNSLYQS-FFHDAFGPREMSATAFV 348 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGD 508 IH +DR R + + + ++RV A + + W+ +P+ + G Sbjct: 349 ERMHGLIHTDDRPRIRKEMMLCLKGLSNTYRVQYRVTTAKDAWIWVEDCGKPVSFDKLGR 408 Query: 509 ILRYIGIANDITEQKKSLEG 528 I R IG DI+++K E Sbjct: 409 ITRMIGSRRDISKEKSRDEQ 428 >gi|294629517|ref|ZP_06708077.1| developmental regulator MorA [Streptomyces sp. e14] gi|292832850|gb|EFF91199.1| developmental regulator MorA [Streptomyces sp. e14] Length = 626 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 139/587 (23%), Positives = 268/587 (45%), Gaps = 34/587 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 A + + D V+ +LG A G + G L + + Sbjct: 42 FRSAFDAAPLAMAVVDREGLVVSANDTFGELLGTAPGELAGRPAADLVDLASD--ARTWQ 99 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS------NSNG--DILRYIGIAND 518 + + R+ RL+ + AD + W+ + + P+ +++G + D Sbjct: 100 AYRAVLRGRQARLRCVRHFKHADGRSRWVQVTLAPLPAEHPDTDASGPESTAGVLLSLAD 159 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKY 576 I+ +++ + D +T +PNR F +RL+ L+ R + +D+D + Sbjct: 160 ISVRRELQSRLRHLRMHDPVTRLPNRTLFFERLSAALETESYERGGTGRIGLCYLDLDGF 219 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-------LARLSGNRFGIILISENNSLK 629 K +ND LG +GD +L ++ RR+ +ARL G+ F +++ + + Sbjct: 220 KAVNDTLGHRIGDRLLAAVARRLQGCADEAGYGRASAPLVARLGGDEFALLVEDSTGTEQ 279 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +AD A ++ ++ P + R ++V+ASIG ++ +++ +++ A+ +Y AK G Sbjct: 280 LADLAESVLTALQEPFEVSGRRLSVSASIGVVERQAAGTSATALMQAADTTLYWAKADGK 339 Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 F R R + L AVE E L Y P++ + D + G+EAL++W HP Sbjct: 340 ARWTLFDPERNATRMTRQALVSTLRAAVERGEFTLEYQPLVAMADGRLRGVEALVRWRHP 399 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLL 806 ++G ++ + F+ +AEE I + ++L R W+ D + PPIF+ +N+A + + Sbjct: 400 QFGVLTPNRFITLAEEDGSIVPLGRWILATACRQARRWQLDHPDEPPIFVSVNVAVRQVW 459 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D++L + ++++T +P ++L +ES VMG+ R L L +G+++ +DDFGT Sbjct: 460 DSDLVADVAEVLAETGLAPRLLQLELTESAVMGSAGRPLEALRALSDMGVTIAIDDFGTG 519 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG------------STEKRIAILRSIIPMAKNIETTII 914 S L+YL +P +K +GS + G + I+ ++I +A + T+ Sbjct: 520 YSNLAYLSRLPVSALKLDGSFVRGFQPGRQTGEAELPSPADEVIVEAMIQLAHRLGLTVT 579 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 A+ + L R+GCD Q + P+ + I +LL + Sbjct: 580 AECVETSDQASRLRRIGCDTGQGWLYSRPVSPDRISELLDGHACGRR 626 >gi|228909573|ref|ZP_04073396.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] gi|228849862|gb|EEM94693.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] Length = 883 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 157/725 (21%), Positives = 314/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227 Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 +V I + L +I +K + LI + FI+ + Sbjct: 228 EDHNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNTKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + + + + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 636 NALQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ N+ Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHINAFT 874 Query: 951 KLLKE 955 +LL+ Sbjct: 875 ELLEN 879 >gi|152977488|ref|YP_001377005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026240|gb|ABS24010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Bacillus cytotoxicus NVH 391-98] Length = 906 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 168/855 (19%), Positives = 344/855 (40%), Gaps = 34/855 (3%) Query: 118 FSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWE 177 F L I+ + R+ DS +F ++P + I +L+E Sbjct: 68 FWMLLTFGSILYFIGDIIVAYQRLILHDSAIF---VDPSDFFYLLCLI---IFVAAFLYE 121 Query: 178 PNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAM-------AWVVLG 230 D L+ I + A F +Y++ ++ I + + Sbjct: 122 L--LYDRNIWEQLFI-ICDVCIVVTAQFTLSYYLLIEQAIHIIATTYLNIIVQLMYPMAN 178 Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH--WNRWHAKVGYITFS 288 + + G L + + + + I ++ YL + + Sbjct: 179 LLFLLIGISLLFRPLSLLSKQVSIFLATSVIGYASIDSIYAYLKYFTAEHSGFIIAPLYQ 238 Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348 + ++ C+ +T + Y + VL+ A+ I Sbjct: 239 FFLMLIVIACVLHTKEAEHTEQVLLTPQIGEAIHLSL-PYLSVIALSTFVLIERAFSPIL 297 Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---GIFSDGE 405 + + + + + +++ L+ + Q L T Q ++ + Sbjct: 298 VIGLIVTF-FFVLIRHILVRRQNKELLLTQMRFNQHLEEQIELRTQDLVQQKDALYRSKK 356 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 D ++ D+ + + T+LG + + + ++ D Sbjct: 357 MFESLYEHHPDPIFTLDLHGNFLNVNHAGITLLGYQTNELLNQP--YYSLVYEKDLKKII 414 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 R + E R + +++ + P+ I + DITE K+ Sbjct: 415 DAFHHVK--RGNSISLEIRAYHKNRDIYFLHVTAVPIILKE-HIPGVYLMIKDITESKQQ 471 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E I A+ D LT + NR+SF +L + + V+ +D+D++K IND LG Sbjct: 472 QEQINFLAYHDTLTELSNRRSFHKQLEEAIVRAKITKQ-PFAVLFLDLDRFKIINDTLGH 530 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +GD +L+++ +R+ ++ LARL+G+ F +++ + ++ ++ A + ++ P Sbjct: 531 RIGDLLLIAIAKRLKQISNPNVKLARLAGDEFTLLIENIKHTAEVQTVADHILAALNEPF 590 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 + + +++SIG A + + +L++A++AMY K++G N + + Sbjct: 591 QIENHHLQISSSIGIAIYPEAGEDPMSILQHADMAMYETKNKGKNGSSIYTQELYEKMER 650 Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 I++D LA+ N++ ++ Y P + + ++IVG EALI+W+HP GNIS EF+ I EE Sbjct: 651 KSRIEKDFPLALANNQFFISYQPQVDIRTKKIVGAEALIRWNHPILGNISPCEFIPIVEE 710 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 I + +ML+ + + W + I +N+++K+ + L E + ++ + Sbjct: 711 TPQIIPLGHWMLKESCKQLKYWHK-LGYADLKISVNLSAKEFQQDNLIENILTILKEVQV 769 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P + L +E + M N + + L L +L++ GI ++DDFGT S L+YL P D +K Sbjct: 770 EPRFLILELTERIAMINEKETLLKLKKLKEHGIQTSIDDFGTGYSSLAYLSLFPIDALKV 829 Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 E+ AI+ +I+ +A + +++A+ I E L C Y+Q + + Sbjct: 830 PREFTQLADQREEERAIISTILSLANTLNLSVVAEGIETEKQFDFLQANNCRYMQGYYFS 889 Query: 942 SPLGFNSILKLLKER 956 PL L L++ Sbjct: 890 KPLTSKQFLNFLQKH 904 >gi|332533546|ref|ZP_08409408.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas haloplanktis ANT/505] gi|332036948|gb|EGI73407.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas haloplanktis ANT/505] Length = 794 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 157/762 (20%), Positives = 310/762 (40%), Gaps = 38/762 (4%) Query: 216 SMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275 M + G + N + +LI + ++ II + Sbjct: 48 QYYAILQQMPFSSTGNMLTSLLLTLFFWNDVNHYVLISWISALWCIAIINIILWYKSKSI 107 Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335 + + +++ + ++ +++ G + Sbjct: 108 EKNTLIKKHAAEWLTVILSLAAILHITMANYLFGLSDEQGRLLIICIIISFASVGAWMFS 167 Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395 + AW+ IF + + + + +++ + + Sbjct: 168 FLPIAGLAWVGIFTLGLLIGIPYHFWGHYWYFALIVTFFGLILASTVIVFS---RMFLSN 224 Query: 396 FSQGIFSDGERQSLAV------LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + +RQ + + + D +W+ D + T+ +A L + + G Sbjct: 225 LEAETKIEHQRQVVGMLLNDFEKNASDWLWETDEKGNLQHTSLHLAKALNVTIQELEGK- 283 Query: 450 RNWLPYI-----HINDRDNFRTI---LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 N+ I ++ F+ + L + + ++ ++ E W I +P Sbjct: 284 -NFSSIIFSLCKSATSKELFQDLNTKLCTPLPFKNMQIPVEVAKCHK-----WWAITAKP 337 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + N NG L + G+ +DITE K + + A D LTG+ NR F + + + A Sbjct: 338 LVNFNGLFLGWRGVISDITEIKLREQEMEFLANADPLTGLANRHKFNQFIKQVFEKKA-- 395 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + T+ ++D+D +K IND LG VGD +L + +R+ +K ++ARL G+ F I+ Sbjct: 396 -SANCTLFLMDLDNFKIINDSLGHIVGDQLLQEMAKRLSAAIKPNGLVARLGGDEFAIVY 454 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A + ++ P + E +I + ASIG AS +T+ ++ K A++A+ Sbjct: 455 QYTLDKTSAQEHAEQILDTLKKPWYVHEYKIEMYASIGIASTPKDTMTAHDLFKFADMAL 514 Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G + F + ++ + D+ + N+E + Y P + L + G E Sbjct: 515 YSAKETGKSKCSFFEQYMEENGKSKLALLSDIKKGLINNEFTIYYQPQVNLKSGSLNGFE 574 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP G I+ F+ +AEE +I + F+L + +D SW + + +N Sbjct: 575 ALVRWNHPIKGTIAPDTFIPLAEESGLINKLGQFILNQACKDASSWPKH-----LKVSVN 629 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++ N L E + + + + ++++ +ESV++ N E +L LR+ G+ + Sbjct: 630 VSALQFTKNTLVEDIFNALKSSNLASEQLEIELTESVMINNYEYVVKVLNNLRERGVKVA 689 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS----TEKRIAILRSIIPMAKNIETTIIA 915 LDDFGT S LSYL IP D +K + S + + AI++SII +A+ + Sbjct: 690 LDDFGTGYSSLSYLQEIPLDKLKIDRSFVEKLNVVDNTQATAIVKSIISLAQALNFETTI 749 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + I I MG Y Q + + P+ S + L+ Sbjct: 750 EGIESANQIAIFKGMGSTYGQGYYYSKPIDSASTISLINNWN 791 >gi|322421187|ref|YP_004200410.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320127574|gb|ADW15134.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] Length = 748 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 137/616 (22%), Positives = 276/616 (44%), Gaps = 32/616 (5%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH--VLATGYFSQGIFSDGERQSLA 410 +A+T+ L ++ A + L + F ++ + A + + E+ Sbjct: 122 VATLAVTRSLAPALMVTASLLFLGAAAAVFAFFRLRTVPLRAIEDAYRILKQSEEKYRSV 181 Query: 411 VLGSGDIVWDW-DIVRDRVT----TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + + + + + P A + G + IR I Sbjct: 182 YESLNEGLVLYKSVPGEDDFLVADINPVAAAVFGFDRDDIGKSIRKVQGGI----FAPAW 237 Query: 466 TILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA-NDITEQK 523 ++ + L+ E + + PM G+ + D+TE+K Sbjct: 238 AAVNGALLGEGDAGLELEL-----EGAGRTFTLNAFPM----GE--GMVATLLEDVTEKK 286 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ E + A+ D+LTG+ NR L+R+ + ++ + LR + +D++ +K IND + Sbjct: 287 RTAEQLEQLAYYDSLTGLLNRSMLLNRMDQTIGIAQR-EGLRMATLFLDLNGFKVINDTM 345 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L+ + RR+ ++ D LARL G+ F ++ + A + + I Sbjct: 346 GHEAGDQILIEVARRLKGSVRKRDTLARLGGDEFVMVATYDK-EENAGYIAQNLLRRITP 404 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSF 700 + RE+ + SIG + + + +LKNA++AMY+ K + F + Sbjct: 405 VYEVCGREVYLGGSIGISVYPDDGDSPETLLKNADIAMYNTKKKQSGVDFCFYSAQLNER 464 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +R+ ++ DL +AVE E +L Y PI+ + +EAL++W P+ G + F+ + Sbjct: 465 LHERMRLEFDLRMAVEREEFFLEYQPIVNARSGRLTAVEALVRWMSPEKGRVMPDSFIPL 524 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I + ++L+ R + W+D P+ + +NI+ + + ++C+ ++ ++ + Sbjct: 525 AEETGIILPLGEWVLKTACRKLKQWQDAGCR-PLRMSVNISGRQFMSGDICQAVEEVLEQ 583 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P+ ++L +E+ ++ N E + L L+ + +++ +DDFGT S L YL P D Sbjct: 584 TGVDPNHLELELTETCLIQNVEETIRKLCHLKGLSVAIGIDDFGTGYSSLQYLKNFPLDH 643 Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + + AI+ +II +AK +E +IA+ + + L GCD +Q Sbjct: 644 LKIDRGFIRNVCELPDERAIVDAIIGIAKAMELHVIAEGVETREQTEYLAMRGCDELQGY 703 Query: 939 HVASPLGFNSILKLLK 954 + PL +L++L+ Sbjct: 704 YFHRPLTEERLLEVLR 719 >gi|239831061|ref|ZP_04679390.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823328|gb|EEQ94896.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 707 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 137/582 (23%), Positives = 244/582 (41%), Gaps = 22/582 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT--TPDIATILGLA 441 ++Q ++ V V+ D+ + + G Sbjct: 123 LAIVQDRTEVTEANRQASHAQTLLDSLVNNLPLGVFVKDMQDNGRYVLFNQAASVASGQP 182 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ---FHWMIIR 498 G L D RR L E +V D + Sbjct: 183 IEEALGATDLDLF---PKREAAVILEQDRMAMRRRDVLSVERKVERKDGTSRTMRIIRCS 239 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ + IG+ D+TE+++ E + A D+LTG+PNR F + ++L Sbjct: 240 IPPVEGD--EPRYLIGLLEDVTERREIEERMAHIAMHDSLTGLPNRAYFAHHVESLLK-- 295 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 D+ + +DID +K IND +G GD +L + RR+ ++ + +ARL G+ F Sbjct: 296 KGGDSEPFALFYLDIDHFKNINDSIGHQAGDQLLQEVARRLKQITTPDEFIARLGGDEFA 355 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I+ S +IA FA + + L+ VT S+G + +++NA+ Sbjct: 356 IVYRSGT-LGQIAMFADRVLSAFQDSFKLVGNSEFVTCSMGISQAPLHGDNPDALMRNAD 414 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 LA+Y +K G ++ S + + +L A+ + + L Y PI L I Sbjct: 415 LALYASKSGGRRTFRFYQHSLRLAAEKRHVMTGELRQALLDEQFELHYQPIFNLESGRIS 474 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G +S +EF+ +AEE +I I ++L R+ + W + I + Sbjct: 475 GFEALIRWRHPERGMVSPAEFIPLAEETGLIGPIGDWVLRAACREAVLWPE-----DIKV 529 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L + + + SP R++L +ESV + N + + LL LR++G+ Sbjct: 530 SVNLSPVQFSQTTLLQSVTDALEAARLSPDRLELEITESVFLSNSKNNIELLFELRRLGV 589 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 590 RIAMDDFGTGYSSLSYLRSFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGAGFNIVTT 649 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 A+ + ++ L +Q P+ + ++ R Sbjct: 650 AEGVETAQQLERLKSERFGEVQGFLTGRPMPAGDVHSFIQNR 691 >gi|114800534|ref|YP_760140.1| putative sensory box-containing diguanylate cyclase [Hyphomonas neptunium ATCC 15444] gi|114740708|gb|ABI78833.1| putative sensory box-containing diguanylate cyclase [Hyphomonas neptunium ATCC 15444] Length = 792 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 152/743 (20%), Positives = 307/743 (41%), Gaps = 31/743 (4%) Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW---NRWHAKV 282 ++L + L+ +N L + + ++ +L R + + Sbjct: 45 VIILSNVLNIIAILAIFLNYGQTHFLYAWSVCGLIINIGAWFKYRSFLRINPQRRSNRRA 104 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASI-ARITLASIVLYYTYFIIYHGMKGYERAVLLI 341 C +L+ ++ + TA + + + I + + + A+ I Sbjct: 105 IADFTRVAICNGLLWGLAPIVVLGTADVQGHMVMGIISAGMMFAGGFLLSRIPIAAIYYI 164 Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 L + L + + ++ L+ LV + V Q++ I Sbjct: 165 VPSGLGLATALMLQTGPKYSILSILMVYYLMVLLVAVAWTHRQFVEQYL-----GRAAIQ 219 Query: 402 SDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILG--LASGSMHGPIRNWLPY 455 E L + + D +W D P +A ++ + Sbjct: 220 EQSELIGLLLRDFEESTSDSLWQTDEAGVLQEL-PIVAEATDSLWSANEVLRRGAPLTSI 278 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H + R L + + + ++ + + HW + +P+ G + G+ Sbjct: 279 FHPGE---ARDALQAALEGQVPFRDQVVPIKDGNGEMHWWSVTGKPVI-ERGQFFGFRGV 334 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 A+D+T+ KK + I A D LTG+PNR + +RL ++L R ++++D+D Sbjct: 335 ASDVTQSKKIEDRIAHMAHYDGLTGLPNRITMQERLESLLRRQPPPPACR-ALLMMDLDS 393 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG GD++L + RI L + D +ARL G+ F +++ N + F Sbjct: 394 FKWVNDTLGHPAGDELLRQVAARIRALSEPGDFVARLGGDEFAMVVER-RNVHDLHGFLD 452 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 ++ ++ +ASIG + + S M + A+LA+Y AKH G F Sbjct: 453 QFASEMSELYDVWGSTANSSASIGVRLFDPAIHDSRTMFRQADLALYQAKHLGKAKWCMF 512 Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 R+ I+E+L A++ +EL + + PI+ + V E L++W HP+ G + Sbjct: 513 DDELEQRAQARLDIQEELQRAIDRNELRIHFQPIVDATTHKTVACETLLRWQHPERGLVY 572 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ AEE +I + +++ + + + I +NI+ + L Sbjct: 573 PGEFIEHAEENGLITRMGEWVIRAALAEATRLPEH-----VRICVNISPLQVHSASLAST 627 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + I+ + PSR++L +E+ +M N E + L +LR +G+ + LDDFGT S L++L Sbjct: 628 IVNAIAASNMDPSRLELEITETALMSNTEFTLRRLHQLRSLGVRIALDDFGTGFSSLNHL 687 Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PFD +K + + ++ AI +S++ +A+++ A+ + + + L+++G Sbjct: 688 RSFPFDRIKIDRTFVSDIETRADSQAITKSMVSLARSLGMQCTAEGVETSLQAEYLSKLG 747 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 C+ +Q + + L++ Sbjct: 748 CEELQGYFFSHAHPLEQLGHLVQ 770 >gi|82703414|ref|YP_412980.1| response regulator receiver /GGDEF/PAS/PAC domain-containing protein [Nitrosospira multiformis ATCC 25196] gi|82411479|gb|ABB75588.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC 25196] Length = 1025 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 117/437 (26%), Positives = 224/437 (51%), Gaps = 6/437 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++K + E + A D LT +PNR FLDRL ++ + + R V+ D+D++K +N Sbjct: 575 DRKTTEERLTYLAQFDPLTELPNRSLFLDRLRQAMEHAHRNRR-RVGVVFADLDRFKIVN 633 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D +G + GD++L+ + +R+ + ++ D +ARL G+ F +IL A + + Sbjct: 634 DTMGHSTGDELLIHVAKRLQQCVRSCDTVARLGGDEFALILSDLVQPEDATLIAEKVISA 693 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698 + +P L +EI V+AS+G + + + +L+NA+ AM+ AK +G + + +++ Sbjct: 694 LQVPFELETQEIYVSASLGISIYPGDGTDADSLLRNADTAMFQAKEQGPAIYQFYLPQMN 753 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ I+ L A+ E L Y P L++ EI G EAL++W HP G + +F+ Sbjct: 754 ERAVARLKIETQLRGALARREFVLHYQPKASLINGEITGFEALLRWQHPAHGLVPPLQFI 813 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 + E+ +I A+ ++++ + I W+ Q + I IN++++ +L + + Sbjct: 814 SVLEDTGLIVAVGEWVVKTVCEQIREWQGQGLVLH-PIAINLSARQFQQQDLDSIIGETL 872 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 T P ++ +ESV+M E + L L+ G+ +++DDFGT S L+YL P Sbjct: 873 RATNIDPRLLEFELTESVLMKEAEMAANALQNLKAFGVQISMDDFGTGYSSLAYLKRFPL 932 Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + + + + I ++I +A ++ ++A+ + ++ L R GCD +Q Sbjct: 933 DVLKIDRAFIRDVTTDPDDATITVAMIKLAHSLGLKVVAEGVETRAQLEFLIRHGCDEMQ 992 Query: 937 DSHVASPLGFNSILKLL 953 + + PL K+L Sbjct: 993 GYYFSQPLPLEGASKVL 1009 Score = 95.0 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 2/149 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + + + + R +LA + +W+W+ + + + I G+A GS Sbjct: 277 RAESNRRERVLLEERTRLALATEAAAIGIWEWNTATNEMIWNDRMYEIYGIAPGS-RITY 335 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 W Y H +D L+ GR+Q +FR+ + I ++N D Sbjct: 336 DIWKSYTHPDDLPQQEMHLERV-SAENGRVQLDFRILREHKTVRHLHIAKALKWSTNPDE 394 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNL 538 LR +G A DIT++K++ I +A Q L Sbjct: 395 LRIVGTAIDITKRKQTDFAIQEHAMQQGL 423 >gi|222111912|ref|YP_002554176.1| diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] gi|221731356|gb|ACM34176.1| diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] Length = 894 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 138/615 (22%), Positives = 258/615 (41%), Gaps = 34/615 (5%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 A+ V+ G V ++ + + A+ Sbjct: 280 ALAGWRQEAQTVLFGALLFAATVVAAGSVVALYLRRMHSARRVVARSKATLDQALEAMVS 339 Query: 417 IVWDWDIVRDRVTTTPDIATILGL---ASGSMHGPIRNWLPYIH--------INDRDNFR 465 D R V + G R +H R Sbjct: 340 GFVLLDAQRCVVQWNLRFEEMFPWLVSTIGEGVPFRRVLETTVHYHLPGASAEEKRAWVE 399 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L R G Q + + + R ++G + I +D+T+ + + Sbjct: 400 ERLQQQCTPRGGVEQL-----LPNGHYVQITERAT----ADG---GVVIIYHDVTDLRLA 447 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + AF D LTG+PNR+ LD+L + V+ ID+D +K +ND LG Sbjct: 448 TAEVEHLAFYDQLTGLPNRRLLLDQLGDASASAVRT-GTHGAVLFIDLDHFKTLNDTLGH 506 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFAIAMRKS 640 +GD +L + RR+ ++ DI+ARL G+ F ++L ++ A + + Sbjct: 507 EIGDYLLQQVARRLESGVRVGDIVARLGGDEFVVLLAGLATEAERAREQVRAVAEKVVQL 566 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +A P + + + S+G A + S T++E+LK A++AMY K + GN V F Sbjct: 567 LAQPYPIAGQSYHGSCSVGAALFGSVLQTAAEVLKQADIAMYQVKAQRGNAVCFFDPRMQ 626 Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 S R ++ DL A+ + L P D +VG+EAL++W HP+ G + +EF+ Sbjct: 627 VALSARARLESDLQDALREGQFLLHLQPQF-TRDGAVVGVEALLRWQHPERGLVLPAEFI 685 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AE+ +I + ++L + W+ + + + +N++++ + E + L+ Sbjct: 686 GVAEDSELIVPLGRWVLASACELLARWQASPRLRELSLSVNVSARQFRSPDFVEQLSQLL 745 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 ++ R++L +ES+V+ + E S + +LR G+ +DDFGT S L+YL +P Sbjct: 746 LRSGAPAHRLELELTESLVLEDVEDSIAKMHQLRTKGVRFAVDDFGTGYSSLAYLTRLPL 805 Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + + + E R ++++I+ MA+N++ ++A+ + E L GCD Q Sbjct: 806 HRLKIDRTFVHHLGESRSDDVVVQTILGMARNLDLEVVAEGVETEEQRSFLALHGCDVYQ 865 Query: 937 DSHVASPLGFNSILK 951 +A P+ ++ Sbjct: 866 GYLLAHPMPVEALQA 880 >gi|54293866|ref|YP_126281.1| hypothetical protein lpl0922 [Legionella pneumophila str. Lens] gi|53753698|emb|CAH15156.1| hypothetical protein lpl0922 [Legionella pneumophila str. Lens] Length = 771 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 138/576 (23%), Positives = 264/576 (45%), Gaps = 16/576 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSM 445 + + + + A+ S V D+ ++ + I G Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQYA 255 Query: 446 HGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G L + + + E + +F+W I + P+ Sbjct: 256 LGKGLFTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +S G + YI I ND+T+++ + +L A D+LT +PNR +DR+ + + + Sbjct: 311 DSFGYVKHYICILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D+D++K ND LG ++GD +L ++ R+ + + D +ARL G+ F I+L Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +N L+ A + K I PI + + + +T S+G + + ++K+A+L+MYH Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489 Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + ++ + + + L A++N EL+LVY P+I L +VG EAL Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W G +S ++F+ +AEE MI + + +++ + W + I +N++ Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKA-GFKNLSIAVNLS 608 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L E + ++ + ++L +ES+++ + + + L+ +G L +D Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKDMGTKLVID 668 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P D +K + S +T + AI ++II + ++ ++A+ + Sbjct: 669 DFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNLQVLAEGVE 728 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E +T GCDY Q +P +IL+ LK Sbjct: 729 NEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764 >gi|88800852|ref|ZP_01116407.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Reinekea sp. MED297] gi|88776425|gb|EAR07645.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Reinekea sp. MED297] Length = 857 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 135/546 (24%), Positives = 240/546 (43%), Gaps = 15/546 (2%) Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRN--WLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 + + L+ P + R V + L Sbjct: 310 LDGVPLLANQAFLKSYRLSPDDYLKPEHYNVIFDSLSPATRQLLEEADQEAVESNQAVLL 369 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 E R D + +R + G + + DITE+K E I A+ D LT Sbjct: 370 PEISWRLPDGHHLSLEMRKLSIQ-YKGQPA-ILSVGVDITERKLHQEHIQHLAYHDALTD 427 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR FLDRL L + ++ +D+D +K IND G GD VL + R+ Sbjct: 428 LPNRHLFLDRLDQALLRTQRSKQY-GALIFVDLDNFKTINDTKGHLAGDAVLADVAERLK 486 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVT 655 + D +ARL G+ F I + + + D ++ + ++ P ++ V+ Sbjct: 487 HAFREVDTVARLGGDEFVICMTDLGRTEQEAYDIAHDRSVKLMDAMKRPFQTQGDQLIVS 546 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCL 713 AS+G A + +T+SE+L +A++AMY AK G N + F+ + +++ ED Sbjct: 547 ASLGLAFFHDHSLTASELLSHADMAMYRAKETGKNRIILFQEEMAEASERLLELKEDSRN 606 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+ E +LV+ P + D +I+G EAL++W HP G +S EF+ + E+ M+ + Sbjct: 607 ALRRDEFHLVFQPQVDARDRKILGAEALLRWTHPSRGMVSPGEFIPLLEDGEMMPLVGQK 666 Query: 774 MLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++E A + WR + + +N++ + + ++ ++ + I L Sbjct: 667 VIELAAAQLADWRKEGLIREDFRLSLNVSPQQFRQADFVSTVRTVLDEHDLPAYLIDLEI 726 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +E +++ N + + + LR++GI ++DDFGT S L+YL +P D +K + S + Sbjct: 727 TEGMIIDNIDHTVAAMKELREMGIHFSIDDFGTGYSNLNYLKRLPLDVLKVDQSFVRDIE 786 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 AI+R+II MA ++ +A+ + E + L +GC Q + PL Sbjct: 787 HDANDTAIVRTIIAMADQLKLNTVAEGVETEDQLTLLRELGCQVFQGYLYSPPLKNVEFA 846 Query: 951 KLLKER 956 LLK + Sbjct: 847 SLLKTQ 852 >gi|329851787|ref|ZP_08266468.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] gi|328839636|gb|EGF89209.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] Length = 700 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 142/550 (25%), Positives = 268/550 (48%), Gaps = 17/550 (3%) Query: 410 AVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 V +V+ D V +LGL+ + G +D FR Sbjct: 150 IVESIPSMVFVKDAQDGRFVLLNKAGEDLLGLSRHDLIGKTD--FDLFDEDDALRFRDAD 207 Query: 469 DSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + V + + E + + + + +++G +GI+ D+TE+ + E Sbjct: 208 RAVVASGKLVTIDKE-PLATPSG-VRQLRTQKIGVPDADGKPRYLLGISEDVTEKLRVEE 265 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 A D LT +PNR F + L + SA D++ ++++D+D++K +ND LG V Sbjct: 266 RSRHLALHDVLTDLPNRLKFQNILDQQMVRSAGDND--FALLLLDLDRFKAVNDSLGHHV 323 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + R+ L+ DI+ARL G+ FG+I + N + A + ++ P N+ Sbjct: 324 GDHLLQQVAGRMRLLMGDNDIVARLGGDEFGVIHKGDGNGDSASWLAQKLIDTLCQPFNI 383 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG--NHVESFRVSSFRSDRV 705 +++ S+G A T+ ++K A+LA+Y AK G F + + Sbjct: 384 DGHNVSIGCSVGIALRALHGHTADSLMKRADLALYAAKATGKGDYAWFQFAMEEKADHQR 443 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 +++E+L +A+E +L + Y PI+ I+ EAL++W HP G IS EF+ IAE Sbjct: 444 ILREELTVALEKHQLSIDYQPIVCTRSGRIICCEALLRWRHPTRGLISPVEFIPIAESSG 503 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I++I ++L R+ W I + +N++ + L + + ++ +P Sbjct: 504 LIESIGQWVLHTACREAADWPS-----DIGLAVNLSPRQFTGFGLAADVTRALDQSHLAP 558 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 +R++L +ES+ + + + + +L +L+++GI + LDDFGT S L+YL FD +K + Sbjct: 559 NRLELEITESIFLTDSQENVRILNQLKQLGIRIALDDFGTGYSSLAYLSCFSFDKLKIDR 618 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + G + + +AI+R++I + K+ T+ A+ + E ++ +TR GCD +Q + P Sbjct: 619 SFIKGMTTSPENLAIVRAVIGLGKSFGATVTAEGVETEAELACITREGCDQVQGYLLGKP 678 Query: 944 LGFNSILKLL 953 + + ++L Sbjct: 679 MAPEILREIL 688 >gi|188581437|ref|YP_001924882.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] gi|179344935|gb|ACB80347.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] Length = 777 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 157/648 (24%), Positives = 268/648 (41%), Gaps = 37/648 (5%) Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 I + + + A L + + + + +D L Sbjct: 161 IFGRAIATLQWQRLGALVPARLGVTGLLAGILGRSDRAVFELASPRSDGTVLHLKVEARA 220 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIAT 436 I LI + I + + +W D V T Sbjct: 221 IGDLIAVAMTD--------IGDIKAREASFRFLFENNPLPMWLVDGETARFVAVNEAAIT 272 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G +L + L R R AD + Sbjct: 273 HYGFDRE-------AFLARRLPD--------LSEAGAPSLSRDGGLHRHLRADGSVIEVT 317 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + R ++ G +G A D+TEQ+++ I A D LTG+PNR F RL + Sbjct: 318 LFERSLAFE-GRPA-VLGAAIDVTEQRRAEARITHMAHHDALTGLPNRALFAVRLAEAIA 375 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 A + ++ +D+DK+K +ND LG GD +L + RI L+ D++ARL G+ Sbjct: 376 EHART-GVAAALLCLDLDKFKFVNDTLGHPAGDALLRQVAERITACLRREDLVARLGGDE 434 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F ++L + ++ + A + ++++ PI L +RE + S+GFA S +L+N Sbjct: 435 FAVLLRN-PDAATVDTIAGRIIEALSRPIRLGDRECQIGVSVGFARLPEHGTESDILLRN 493 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LA+Y AK GG+ F + R + DL A EL L Y P++ + Sbjct: 494 ADLALYRAKAEGGSVAHGFEAAMDSWARSRRRRETDLHEAFARGELALAYQPVLGVRSRA 553 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I+G EAL++W H G I S+F+ +AEE +I I ++L + + W D PI Sbjct: 554 ILGFEALLRWQHSVEGAIPPSDFVPLAEETGLIVPIGAWVLRQACAEASLWAD-----PI 608 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ D L ++ ++ + +P R++L +ESV++ E + L LR++ Sbjct: 609 RVAVNLSPVQFRDPGLVATVREALALSGLAPQRLELEVTESVLLAASEANVATLHALRQL 668 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETT 912 G+ + +DDFGT LSYL PFDT+K + S + G AI+R++I + ++ Sbjct: 669 GVRIAMDDFGTGYCSLSYLQRFPFDTIKIDRSFVNRLGDDPHSTAIVRAVIGLGASLGIV 728 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 +A+ + E +L GC +Q P +L++ L Sbjct: 729 TVAEGVETEAQFAQLRAEGCGEVQGYLFGRPAPAAEARRLIRREPDLA 776 >gi|315123462|ref|YP_004065468.1| sensory box protein [Pseudoalteromonas sp. SM9913] gi|315017222|gb|ADT70559.1| sensory box protein [Pseudoalteromonas sp. SM9913] Length = 990 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 125/562 (22%), Positives = 246/562 (43%), Gaps = 17/562 (3%) Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 E+ L + + + + + V P I G + + G ++L Sbjct: 419 EEKLHLSSRVFRDTHEGIIITNADKVIVDVNPAFCHITGYSHDEVIGRNPSFLNS----- 473 Query: 461 RDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + G Q E D + + ++ I + + + ++ Y+GI D Sbjct: 474 GKQTESFYKNIWKQLSLYGHWQGEVWNCKKDGELYAELLNISVLKD-DNNVTFYLGIFTD 532 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT+ K+ E + A D LT +PNR DRL+ + +N V+ +D+D +K Sbjct: 533 ITQAKRQQEQLSRIAHYDLLTNLPNRVLLADRLSQTMLQCRRHNN-SLAVVFLDLDGFKH 591 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND G +GD +L++L+ R+ + L+ D LAR+ G+ F +L + + + Sbjct: 592 VNDSHGHDIGDKLLIALSIRLKDALREGDSLARIGGDEFVAVLTNLGSVADCVPVLERLL 651 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + A P+ + + + V+ASIG + + + +++++A+ AMY AK G N F S Sbjct: 652 AAAAKPVTVNDIVLNVSASIGVTIYPEDNLDAKQLMRHADQAMYIAKQMGKNRYHLFDTS 711 Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ + A+ N+ L Y P + + ++G+EALI+ HP+ G +S E Sbjct: 712 QGDTVKLQQTGISLIREALANNWFVLYYQPKVDMRTGSMIGVEALIRVQHPERGLLSPIE 771 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ + E ++ + +++ I W+ I + +N+A+ L E + Sbjct: 772 FLPVIENNALMIDVGEWVINAALSQINHWQILTPSLNIKVSVNVAAVQLQQPEFTARLTE 831 Query: 817 LISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 L+ ++L E+ + + + + +G+ +LDDFGT S L+YL Sbjct: 832 LLLAHPQVDARNLELEVLETSALNDVAHVSKTMQDCKALGVEFSLDDFGTGYSSLTYLRR 891 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P +K + S + +AI++ +I +A + + ++IA+ + L +GC Sbjct: 892 LPASLIKIDQSFVRDMLEDSNDLAIVKGVIALANSFKRSVIAEGVETPEHAATLMLLGCY 951 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 Q +A P+ I L E Sbjct: 952 LAQGYGIAKPMKAEDIPIWLDE 973 Score = 91.6 bits (226), Expect = 7e-16, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 10/196 (5%) Query: 339 LLIPAW----ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 I W +L+ I + L + +I L L + Q A Sbjct: 234 YPIMGWQDNSMLLLGIAIAVAFTFLTTLSSYLITRLRASHLKLEKKV-----EQRTHALQ 288 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + R L+ G W+WDI + + + ++ + +L Sbjct: 289 NNIKALTDTERRLLLSQKVGGIATWEWDIKTNIIRFSEHGIRLITGNVKQLEMTKNEYLA 348 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 IH NDR N + ++ + + + R+ W + + +++G + +G Sbjct: 349 SIHPNDRANIVSDINQCIDAAKE-YNVDHRIITKRGNVRWFNTKGTLVRDNSGSAITMLG 407 Query: 515 IANDITEQKKSLEGIL 530 ++ DITE+K E + Sbjct: 408 VSVDITERKLFEEKLH 423 >gi|239931087|ref|ZP_04688040.1| hypothetical protein SghaA1_22900 [Streptomyces ghanaensis ATCC 14672] Length = 565 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 132/554 (23%), Positives = 264/554 (47%), Gaps = 27/554 (4%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D V+ +AT+LG ++ G + L + + + R+ +L+ Sbjct: 5 DREGMVVSANGSLATLLGSDPDTLTGAVAADLVDLSSD--ARIWHAYREVLRGRQAKLRC 62 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 R++ + W+ + + P+ + + D++ +++ + D +T + Sbjct: 63 TRRLKHPEGHAPWVRVTVAPLPADD---EGVLLSVTDLSTRRELQARLRHARLHDPVTRL 119 Query: 542 PNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 PNR FL+RLT L+ R + +D+D +K IND LG +GD +L ++ R+ Sbjct: 120 PNRTLFLERLTAALEAESYERSGTGRIGLCHVDLDGFKAINDTLGHRMGDRLLAAVAERL 179 Query: 600 GELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + ++ARL G+ F +++ + ++AD A ++ +I +P +L + + Sbjct: 180 TRCARESGRSRAGAPLVARLGGDEFALLVEDSTGTEQLADLAESVLGAIQVPFDLCGQRL 239 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKED 710 +V+ASIG ++ T + +++ A+ +Y AK G F R + Sbjct: 240 SVSASIGVVERHTAGTTPTALMQAADTTLYWAKADGRARWTLFDPERNAHRVTRQALASA 299 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A+E E L Y P++ + D+ + G+EAL++W+HP++G ++ + F+ +AEE I + Sbjct: 300 LRPAIERGEFALEYQPLVGMEDDRVHGVEALVRWNHPRFGTLTPNRFIGLAEEDGSIVPL 359 Query: 771 NLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 ++L R W+++ PPIF+ +N+A + + D++L + +++ T +P ++ Sbjct: 360 GRWVLRTACRQARRWQEEHPEEPPIFVSVNVAVRQIRDSDLVADVAGILADTGLAPRLLQ 419 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES VMG+ R +L L +G+ + +DDFGT S L+ L +P +K +G+ + Sbjct: 420 LELTESAVMGSSGRPLQVLRELSDMGVRIAIDDFGTGYSNLANLSRLPVSVLKLDGAFVR 479 Query: 890 G----------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 G I+ +++ +A + T+ A+ + L R+GCD Q Sbjct: 480 GFPYEERSAAPPNPADEVIVEAMVQLAHRLGLTVTAECVETSAQATRLRRIGCDTGQGWL 539 Query: 940 VASPLGFNSILKLL 953 + P+ + I +LL Sbjct: 540 YSRPVPPDRISELL 553 >gi|209528168|ref|ZP_03276640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Arthrospira maxima CS-328] gi|209491401|gb|EDZ91784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Arthrospira maxima CS-328] Length = 1190 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 155/582 (26%), Positives = 289/582 (49%), Gaps = 15/582 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +V L+ +Q F + E+ + + ++ D+ ++ P +A I Sbjct: 605 LVKLVSSVAMQL---GSVFQRK--QAEEKYRDIFENALEGIFQIDLQGKYISANPALAQI 659 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 LG S + + ++ D + + ++ + R +E +V D + W+ Sbjct: 660 LGYDSQQQLLVRGSQIKNVY-ADPETYNRFIN-LLQTRGSVSNFEAQVYRRDGEAIWIWQ 717 Query: 498 RIRPMS-NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 R + + + +L Y G +IT K++ + +A D+LT + NR FLD+L + Sbjct: 718 NARAIYSDRHNRVLYYEGSIMEITHLKETEAKLRHSASHDSLTDLWNRAFFLDKLDDSIR 777 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 T DN + ++ +D+D ++ IND LG A+GD +L+ +++R+ + + ILARL G+ Sbjct: 778 KCKTLDNYQFAILFLDLDGFQFINDSLGHAIGDQLLIEVSKRLTDSVDSH-ILARLGGDE 836 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+L + + + D A +++S+ +PI L + +I ASIG S+ +S E+L++ Sbjct: 837 FTILLENIRDIQEAIDVAERIQESLKLPIFLEKNQIFTGASIGIVEGNSNYQSSPEVLRD 896 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK +G F + + + + L LA++ + L Y PII L Sbjct: 897 ADTAMYRAKRQGKGCYVVFDSTMRTNALRRLYLQTQLRLALQEQQFELNYQPIIELSTGT 956 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPP 793 I G EAL++WDHP+ G IS +EF+ IAEE +I I ++L + + W+++ Sbjct: 957 IAGFEALLRWDHPQEGLISPAEFIPIAEEAGLIVDIGEWVLRQACFQLSEWKEKFAVYSN 1016 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++S+ + +L + ++ +T + S +KL +E+ +M +PE + L +L++ Sbjct: 1017 LMMSVNLSSQQFTN-DLSRRISKILVETGVAGSELKLEITETAIMNDPELAIATLQQLKQ 1075 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 I + +DDFGT L YL P D +K + S ++ E + I+R I+ +A++++ Sbjct: 1076 QQIKICIDDFGTGYCSLGYLHKFPVDILKIDRSFVSQIPEGEDKREIVRVIVALAESLKM 1135 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 IA+ I + L C Y Q PL ++ LL Sbjct: 1136 DAIAEGIETAEQLHHLQNFKCKYGQGYFFFRPLNCQAVEALL 1177 Score = 64.2 bits (155), Expect = 1e-07, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 3/162 (1%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431 LV+I+ + + Q + + + + + D+ Sbjct: 303 TACLVVIIRPLTNQISQEIWERHKAEAELIKEKNFTQTLLEANPAFFIVLDVEGKVKFMN 362 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 P + LG + G + ++ + + + + + RR ++ E + D++ Sbjct: 363 PSMLNTLGYKQEEVEGMNYS-ATFVPKEEGKSAPWVFELMI-NRRLPIRTEETMITKDDR 420 Query: 492 FHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCN 532 + R + N + ++G DIT++K++ E + Sbjct: 421 EIIVEWYGRAVFNKETDEYEYFVGAGLDITDRKRADEELQLL 462 >gi|240140674|ref|YP_002965154.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS/PAC sensor [Methylobacterium extorquens AM1] gi|240010651|gb|ACS41877.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS/PAC sensor [Methylobacterium extorquens AM1] Length = 700 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 140/575 (24%), Positives = 257/575 (44%), Gaps = 23/575 (4%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-- 449 A + R A+ + +D + + I GL ++H + Sbjct: 124 ALVEAHAELSEQNRRFDAALENMTHGLCMFDAEQRLLVWNRRYLGIFGLPDDAVHVGMGQ 183 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNS 505 R + + +D+ R L + AD + + R PM++ Sbjct: 184 RAIIEMLVARGCYKRGATVDAISEGTRTSLSGDGSKSVLRELADGRVIAVTHR--PMADG 241 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G ++ DITE++++ I+ A D LT +PNR + L T Sbjct: 242 GG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAP 297 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND G AVGD +L ++ R+ ++ D++ARL G+ F +L Sbjct: 298 LAVLCLDLDRFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFA-VLSRVE 356 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHA 684 ++ A A + +++A P L + + S G A +LK A+LA+Y A Sbjct: 357 DAAAAAALAERLIETVAAPYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEA 416 Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G V F +R+ ++ +L A+ L Y P++ L D I G+EALI Sbjct: 417 KTEGRGTVRLFEPQMDETLRERLGLERELREALTLDRFELHYQPLVDLSDNRITGMEALI 476 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G +S + F+ +AEE +I I ++L + RD + W + I + +N++ Sbjct: 477 RWHHPERGLVSPAVFIPLAEETGLIVPIGEWVLRQACRDAVDWPGE-----ISVAVNVSP 531 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + + ++ + SR++L +E+V++ + E + L LRK+G+ +++DD Sbjct: 532 LQLRHRGFIQSVLGALAASGLKASRLELEITENVLLDDTEANLETLHTLRKLGVRISMDD 591 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920 FGT S +SYL PFD +K + S + + AI+R+I+ + ++ T + + + Sbjct: 592 FGTGYSSISYLRRFPFDKIKIDRSFVRDCAAQSEAGAIIRAIVSLGASLGITTLVEGVET 651 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E + + G +Q + P + I LL+ Sbjct: 652 EPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 686 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 19/159 (11%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E +A D +W D +P +LG + + G R+ L Sbjct: 3 LNDLEELARIAF----DWLWATDAEDRFSYVSPGAERVLGRSPADLIGLTRSALVCEGEG 58 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D + + RR + R D W I RP + GD L Y G+ +D+ Sbjct: 59 DS---LAVYRETITARRPYRDLTYVYRHPDGTPRWFEISGRPHFSPEGDFLGYHGVGSDV 115 Query: 520 TEQKK----SLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 TEQ + +E + Q NR+ F L + Sbjct: 116 TEQHRTRCALVEAHAELSEQ-------NRR-FDAALENM 146 >gi|302877347|ref|YP_003845911.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302580136|gb|ADL54147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 951 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 145/574 (25%), Positives = 261/574 (45%), Gaps = 18/574 (3%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 + F + + ++A + + + D + + G + + G Sbjct: 368 TVQDVTFREEAATQLRIAAVAFD-TQEAIMVTDKEANIIKVNHSFELTTGFSEQEVLGKN 426 Query: 450 RNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L H D F + + R G E R + + + + I + N + + Sbjct: 427 PRLLGSGRHNQD---FYKSMWEVL-NRVGSWSGELWDRRKNGEIYPKWLTITAVKNRD-E 481 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I Y+G+ DITE+KK+ E I AF D LT +PNR+ LDR+ L LSA N + Sbjct: 482 ISHYVGVFVDITERKKAEEEIHNLAFFDPLTQLPNRRLLLDRMRLALGLSARSKNF-GAL 540 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 M ID+D +K +ND G GD +L+ ++ R+ + L+ D +AR G+ F ++L S + + Sbjct: 541 MFIDLDHFKVLNDTKGHEYGDKMLIEVSHRLTQSLRDTDSVARFGGDEFVVLLESLSVNQ 600 Query: 629 KIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 IA A MR+S++ + T SIG + I E+LK A+LAMY Sbjct: 601 DIAVAQAGSIAEKMRESLSQTYIIESYAHESTPSIGVVLFNGDAIEIDELLKRADLAMYQ 660 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N V F + + ++ L A+ NSE L Y + E++G E L Sbjct: 661 AKESGRNTVRFFESAMQATLESRTLMERALRQALSNSEFELYYQVQTNQAN-ELLGAEVL 719 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W G IS ++F+ +AE+ +I I ++LE + +W + + + +NI+ Sbjct: 720 LRWHSQSLGPISPAQFIPLAEQTKLILPIGEWVLENACARLKAWETHPTLSKLRLAVNIS 779 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + +QA ++ + +P R++L +E++V+ + + + + L+ +G+ ++D Sbjct: 780 PVQFHQPDFVRQVQAALTDSGVNPRRLELELTENLVLEDVDEAIQKMSALKALGVRFSMD 839 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L Y+ +P D +K + S + ++++I MA+N +IA+ + Sbjct: 840 DFGTGYSSLQYIKRLPIDQLKIDQSFVRDILTDPGDAMMVQTIAGMARNFGYEVIAEGVE 899 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L GC+ Q + P+ L+ Sbjct: 900 EHAQLLPLIERGCNTFQGYFFSRPVALAEFEHLI 933 Score = 89.6 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 1/117 (0%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W+ D+ R+ + +I + + +L IH DR+ + + ++ Sbjct: 271 GSWELDLHSGRLNWSEEIFRLFEIDPAQFSPSHEAFLSIIHPEDREAVNQAYTNSLTNKQ 330 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 R+ AD + W+ R + G +R G D+T ++++ + A Sbjct: 331 -SYHITHRLIMADGRVKWVEARGSNYFDPEGRAIRSAGTVQDVTFREEAATQLRIAA 386 >gi|221196784|ref|ZP_03569831.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Burkholderia multivorans CGD2M] gi|221203453|ref|ZP_03576472.1| PAS fold family protein [Burkholderia multivorans CGD2] gi|221177387|gb|EEE09815.1| PAS fold family protein [Burkholderia multivorans CGD2] gi|221183338|gb|EEE15738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Burkholderia multivorans CGD2M] Length = 749 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 132/567 (23%), Positives = 248/567 (43%), Gaps = 13/567 (2%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--W 452 +Q + E L V + + + + P +L A G + G + Sbjct: 181 RIAQQLARSEEHHRLVVNSLNEGILVVSRDGVVIASNPSANRML-RAKGELVGRRMSTVI 239 Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDI 509 L + + + L Y AD W+ P+ + Sbjct: 240 LRKLSEDGTPIAPDRWPSRRALTSGTPVLDYTVGFGLADGDVIWVRGNAVPIVKPGDTQA 299 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTV 568 + +DI +++ + + A +D LTG+ NR+ DR+ + R + Sbjct: 300 ASVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAI 359 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+ +KK+ND G GD +L S+ R+ ++ L R+ G+ F I++ ++ Sbjct: 360 LFLDLVGFKKVNDTAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPE 419 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 +A A + +IA P + E + SIG + ++ +++NA+ AMY AK RG Sbjct: 420 ALAALAREVIDAIAKPFAVANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRG 479 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 NH F + I++ L A+ ++ L L Y P++ VG EAL++W Sbjct: 480 RNHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARTGRTVGAEALLRWTS 539 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ + Sbjct: 540 PELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQFH 598 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L E + +++T P ++L +E V+M + +L L ++ + +++DDFGT Sbjct: 599 D-GLVESVNRCLAQTRLDPGALELEITEGVLMNDTATVLPMLEALTEMNVRISVDDFGTG 657 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + E Sbjct: 658 YSSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGMKVTAEGVETEAQS 717 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951 L ++GCD Q + PL + Sbjct: 718 WFLQQIGCDMQQGYLFSRPLDPVDYAR 744 >gi|328545051|ref|YP_004305160.1| Ammonium transporter [polymorphum gilvum SL003B-26A1] gi|326414793|gb|ADZ71856.1| Ammonium transporter, putative [Polymorphum gilvum SL003B-26A1] Length = 1049 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 142/581 (24%), Positives = 261/581 (44%), Gaps = 22/581 (3%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 + L+ + + + + A+ + + V + Sbjct: 434 MFNALMDSIQNEELAQIQAADAARSREEAERLSALANATFEAIVISVDGRIVDGNAALED 493 Query: 437 ILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 +LGL + G + ++L +DR+ LD + R E V D + Sbjct: 494 LLGLPITRLKGRDLSHFLSL---DDREELLKHLDEAESHPR-----ELTVLHQDGTPVPV 545 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 +R R + + G R + D+ E+KK+ IL A D LT +PNR F L + Sbjct: 546 EMRTRMI-SYRGVPTRVTAVI-DLRERKKAEAQILHLAQHDPLTDLPNRAVFNKELEAAI 603 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D + +++ID+D++K IND+ G VGD V+ R+ + + D +ARL G+ Sbjct: 604 DEARAAV-ASSALLLIDLDRFKDINDLHGHLVGDRVIRVTAERLRQGSRRTDTVARLGGD 662 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI-TVTASIGFASWTSSKITSSEML 674 F +I + + + D A + ++ PI+ I ASIG + + + ++ Sbjct: 663 EFAVIQRNIDFVTQAEDMAHRLLDRLSAPIDCGNGLILRAGASIGISVIPAQGGGAETIV 722 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732 NA++A+Y AKHRG N F+ R ++ DL +A+E + L + P +++ D Sbjct: 723 SNADIALYEAKHRGRNAYCLFKDGMGDLMRRRRELEADLDIALEKGQFELHFQPRLQISD 782 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I EALI+W+HP G I+ ++F+ +AE I I ++L+ +A Sbjct: 783 ARIASYEALIRWNHPDKGLINPADFIPVAEGSGQILGIGKWVLDEALTVAARHLGEA--- 839 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I +N++ +N + ++ I ++ PSR++L +E++++ + R+ +L +L+ Sbjct: 840 --RISVNVSPLQFRENGFADAVEEAIDRSGLPPSRLELEITENLLIEDDARALSILRKLK 897 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910 GI + LDDFG S L YL PFD +K + S + G AI+ ++ + + Sbjct: 898 AKGIRIALDDFGVGYSSLGYLSRFPFDAIKIDRSFVVGIHTNANALAIVETVARLGHALG 957 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++A+ I E +++ + GCD IQ V P ++ + Sbjct: 958 MEVVAEGIEREEELRIMIDKGCDEIQGFLVGRPKPIGALER 998 >gi|254000402|ref|YP_003052465.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253987081|gb|ACT51938.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 722 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 154/581 (26%), Positives = 268/581 (46%), Gaps = 9/581 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 LA +Q + + R A+ G+G VWDWD+ +RVT + T+LG + Sbjct: 139 TAARWLAMALQNQALAASNARWKFALDGAGHGVWDWDLGSNRVTFSTQWKTMLGYDEQDI 198 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 ++WL +H D +F+T++D+ L E+R+ N++ W++ + M+ Sbjct: 199 GDDCQDWLSRVHPADLAHFKTLIDAVKSGEAQSLICEYRLLTKTNEWCWILSKGMIMAGK 258 Query: 506 NGD-ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + R IG DIT +K+S I A D LTG+PN+ L+ + N Sbjct: 259 DHEGPRRMIGTNTDITARKQSERLIWQQANFDALTGLPNKHLLNQLLSERI-HGDHGANN 317 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 +M++D+D +K +ND LG GD +L+ RI + DI+AR G+ F II+ + Sbjct: 318 MVALMIVDLDNFKDVNDALGHIYGDMLLMEAASRIQAAVLPADIVAREGGDEF-IIVTTA 376 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + ++ + A + + + LL + ASIG A + ++ + ++K A+ A+Y A Sbjct: 377 ASLAELENTATNVLRVLGQSYELLSEVVFCAASIGIALYPQHTLSPNVLMKYADQALYLA 436 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K + + +L AVE + Y PI RL E V EAL+ Sbjct: 437 KSTARGQYAFYSHELEEEALKRSKLTTELRFAVEEQAFEVFYQPIFRLDTRETVKAEALV 496 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G +S +EF+ +AE +I AI ++ + A + R P I +N + Sbjct: 497 RWKHPERGYVSPAEFIPLAESTGLINAIGDWVFKEAAMFAKALRGSYA-PDFQISVNKSP 555 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + A ++ I + +E +++ + + ++R G+S++LDD Sbjct: 556 MQFLTVGKLDW-AAFLTNLDLPGKAISVEITEGLLLQQSQEVNARIKKIRDTGMSISLDD 614 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL D +K + S + + K A+ ++II MA + +IA+ I Sbjct: 615 FGTGYSSLSYLSSYEIDYLKIDRSFIINLTTSSKNQALCKAIITMAHELGYQVIAEGIET 674 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 E ++ L+ +GCD Q ++ PL + L + Sbjct: 675 EQQLQLLSALGCDLGQGYFISRPLPQQDFVAWLASSLSTTQ 715 >gi|218532082|ref|YP_002422898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] gi|218524385|gb|ACK84970.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] Length = 700 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 139/575 (24%), Positives = 256/575 (44%), Gaps = 23/575 (4%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-- 449 A + R A+ + +D + + I GL ++H + Sbjct: 124 ALVEAHAELSEQNRRFDAALENMTHGLCMFDAEQRLLVWNRRYLGIFGLPDDAVHVGMGQ 183 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNS 505 R + + +D+ R L + AD + + R PM++ Sbjct: 184 RAIIEMLVARGCYKRGATVDAISEGTRTSLSGDGSKSVLRELADGRVIAVTHR--PMADG 241 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 G ++ DITE++++ I+ A D LT +PNR + L T Sbjct: 242 GG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAP 297 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D++K +ND G AVGD +L ++ R+ ++ D++ARL G+ F +L Sbjct: 298 LAVLCLDLDRFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFA-VLSRVE 356 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHA 684 ++ A A + +++ P L + + S G A +LK A+LA+Y A Sbjct: 357 DAAAAAALAERLIETVGAPYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEA 416 Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G V F +R+ ++ +L A+ L Y P++ L D I G+EALI Sbjct: 417 KTEGRGTVRLFEPQMDETLRERLGLERELREALTLDRFELHYQPLVNLSDNRITGMEALI 476 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G +S + F+ +AEE +I I ++L + RD + W + I + +N++ Sbjct: 477 RWHHPERGLVSPAVFIPLAEETGLIVPIGEWVLRQACRDAVDWPGE-----ISVAVNVSP 531 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L + + ++ + SR++L +E+V++ + E + L LRK+G+ +++DD Sbjct: 532 LQLRHRGFIQSVLGALAASGLKASRLELEITENVLLDDTEANLETLHTLRKLGVRISMDD 591 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920 FGT S +SYL PFD +K + S + + AI+R+I+ + ++ T + + + Sbjct: 592 FGTGYSSISYLRRFPFDKIKIDRSFVRDCAAQSEAGAIIRAIVSLGASLGITTLVEGVET 651 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E + + G +Q + P + I LL+ Sbjct: 652 EPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 686 Score = 80.4 bits (197), Expect = 2e-12, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 19/159 (11%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + E +A D +W D +P +LG + + G R+ L Sbjct: 3 LNDLEELARIAF----DWLWATDPEDRFSYVSPGAERVLGRSPADLIGLTRSALVC---E 55 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + RR + R D W I RP + GD L Y G+ +D+ Sbjct: 56 GEGESLAVYRETITARRPFRDLTYVYRHPDGTPRWFEISGRPHFSPEGDFLGYHGVGSDV 115 Query: 520 TEQKK----SLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 TEQ + +E + Q NR+ F L + Sbjct: 116 TEQHRTRCALVEAHAELSEQ-------NRR-FDAALENM 146 >gi|296504250|ref|YP_003665950.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|296325302|gb|ADH08230.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 906 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 161/808 (19%), Positives = 323/808 (39%), Gaps = 64/808 (7%) Query: 203 AIFLTIFYMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261 ++ + + W +I L+ + L L + I Sbjct: 104 VFYMFFLFFCLIAFCYKILKECNKWEKAFFICDICIVLTSIFTLE--WYLFNQPNLNIFA 161 Query: 262 SSSLIIFLF---------------------MYLHWNRWHAKVGYITFSGIACIAILFCMS 300 S +FL + R ++ S I F ++ Sbjct: 162 LSLGDVFLSFLYPIADLLFLLLGVSLFFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLN 221 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--------PAWILIFIWFI 352 + T + R+ +L R L+ I Sbjct: 222 NHLSTETIILLRLLYRIPILLIAIAGSISEDHNSHRNYFLVNPIIGKKALVVFPYLAVAI 281 Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVL 391 + + ++ + + + ++I +Q Sbjct: 282 LIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTS 341 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + S+ + ++ D ++ D+ + + +LG + + G Sbjct: 342 DLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC- 400 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 I D+ L+ LQ + D +++ + I P+ +G I Sbjct: 401 -FSIILDEDKHKLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISG 456 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DIT KK E I AF D +T I NR F +L ++ + ++ ++ + Sbjct: 457 SYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYL 515 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG + GD +L + +R L L+R+ G+ F II+ + + + Sbjct: 516 DLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLF 575 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGG 689 + K + + E ++T++ SIG A + S I ++ +LKNA +AMY AK Sbjct: 576 QLCNQLFKCMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNS 635 Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + ++ R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ Sbjct: 636 VSIYNDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPEL 695 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS EF+ IAEE I +I + LE+ + + W + I +N+++K+ + Sbjct: 696 GIISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQED 754 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + + ++ T S + L +E + M + + + L L+ +GI +++DDFGT S Sbjct: 755 FVKSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSS 814 Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + + + + + I+++II +A + ++IA+ + + + L Sbjct: 815 LAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFL 874 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C +IQ + + P+ ++ +LL+ Sbjct: 875 QKNKCQFIQGYYYSKPIHIHAFTELLEN 902 >gi|307331393|ref|ZP_07610512.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces violaceusniger Tu 4113] gi|306882952|gb|EFN14019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces violaceusniger Tu 4113] Length = 656 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 136/559 (24%), Positives = 257/559 (45%), Gaps = 17/559 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 A + + D P + +LG + L + + Sbjct: 99 YRAAFNVARLAMAVVDREGRVRDANPALGALLGTDPAVLTTRSAADLANLRED--PRTWK 156 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 +G R RL+ R+ D W I I P +S + DI++Q+ Sbjct: 157 EYRDVLGGRLARLRRTRRLLRPDGHALWAEITIEPAPDSR----TLLLSMADISDQRDLQ 212 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL--RPTVMVIDIDKYKKINDVLG 584 + D +T +PNR F +R+T+ L+ + D R + +D+D +K +ND LG Sbjct: 213 GRLRHLQMHDPVTRLPNRSLFFERMTSALEAATYDHGGTGRIGLCYLDLDGFKAVNDTLG 272 Query: 585 IAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 VGD +L ++ +R+ E ++ARL G+ F +++ + + ++ D A ++ ++ Sbjct: 273 HRVGDRLLGAVAQRLTEYAAPGGHLVARLGGDEFALLVRNSTGTEQLCDLARSLLAALQE 332 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P ++ + ++V+ASIG ++ ++ +++ A+ +Y AK G F Sbjct: 333 PFDVGGQRLSVSASIGVVERPAAGTHTTWLMQAADTTLYWAKEDGKARWTLFDPERNAHR 392 Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + L AVE E L Y P++ L D + G+EAL++WDHP++G +S + F+ +A Sbjct: 393 MTRQALSSTLRPAVERDEFVLDYQPLVGLGDGVVRGVEALVRWDHPQFGRLSPNRFIPLA 452 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE I + ++L R W+ P+ + +N+A + + D++L + ++++T Sbjct: 453 EENGAIVPLGRWVLRTACRQARVWQLANPTHPLVVSVNVAVRQVWDSDLVADVGTILAET 512 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P ++L +ES VMG+ R L RL +G+ + +DDFGT S L+YL +P T+ Sbjct: 513 GLPPHLLQLELTESAVMGSTGRPLQALQRLSDMGVPIAIDDFGTGYSNLAYLSRLPVSTL 572 Query: 882 KFNGSLMTG------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 K +GS + G I+ +++ +A + T+ A+ + + L R+GCD Sbjct: 573 KLDGSFVQGFRAEEHPNPADETIVEALVQLAHRLGLTVTAECVESAEQAERLRRIGCDTG 632 Query: 936 QDSHVASPLGFNSILKLLK 954 Q + P+ + I ++ Sbjct: 633 QGWFYSRPVPPDRIQTMIT 651 >gi|326796306|ref|YP_004314126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] gi|326547070|gb|ADZ92290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas mediterranea MMB-1] Length = 836 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 122/581 (20%), Positives = 268/581 (46%), Gaps = 16/581 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI--------LG 439 + V ++ + R V S D++ +D + P + + LG Sbjct: 248 RDVTEKKRSAEQMRQSESRFRSLVENSPDLIARFDDHCRLLYANPVLERLSGTPFIHFLG 307 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 L+ + I L + + + ++ E + + + + + + Sbjct: 308 LSFTDIEKHIYTKLEEVATLAESPIDESMRQVLKT-GTSVEIEREIPSTSGPMNCI-VSL 365 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 P N +++ + + D++E K+ E + ++ D+LTG+PNR +FL+ + L ++ Sbjct: 366 TPEFNDRDELVSVLAVCKDMSEVKRYQEQVRYLSYHDSLTGLPNRATFLNDVRKRLISNS 425 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ ++V +D +K +ND LG GD +L S++ R+ ++L I+ARL G+ F Sbjct: 426 KASAMKLGLLVFGLDHFKGVNDSLGYEYGDLILKSISNRLRDILPKNAIIARLGGDEFAA 485 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + + A + +++P+ + +E+ ++ S G + +++ A+ Sbjct: 486 MLPTIPDREEFVCMATNISGELSLPVLIGRKEMPISISTGACLYPDDAFELDSLVRYADS 545 Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 A+Y AKH V + +R+ ++ DL A++N E Y P L E++G Sbjct: 546 ALYAAKHEQRGSVRFYTPELTKQAQERLQMRNDLRRALKNKEFIPYYQPKFDLQTREVLG 605 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W+HP+ G + +F+ + EE+ +++ +++ ML+ + + W+ Q I Sbjct: 606 AEALVRWNHPEKGLVPPFDFIPVLEEMGLVEEVDMMMLDMVCGQLEKWQ-QLTDTGGKIA 664 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N + +L + + +I +P I++ +E V++ + ++ L+ + +G S Sbjct: 665 VNFSGLQFKYEKLLDKVVDIIESHKLTPKAIQIEVTEGVLLEHHDQLPLIFRDFKALGFS 724 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915 + LDDFGT S L YL P DT+K + S + + ++++I+ MA+N++ ++A Sbjct: 725 IALDDFGTGYSSLGYLSKYPIDTLKIDRSFVNNINKNEADDILIKTIVSMAQNLKMDVVA 784 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKE 955 + + + L +G +Q P+ + L++ Sbjct: 785 EGVETKPQADWLASIGVRIVQGYLFGRPMSATNFEAAFLQD 825 Score = 52.6 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 2/122 (1%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 S D++ +D + R+ T+ G+ ++ G + + ++ Sbjct: 143 VAEHSPDVIIRYDCLGRRMYANKAFETVTGVEVKNVIGRTPKEYSGVGVA--ASYLQEFV 200 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + E D + P N + ++ I I D+TE+K+S E + Sbjct: 201 ADIVKTGEFKAGELNHSTPDGSRIIFDLHGIPELNKDEEVESVILIGRDVTEKKRSAEQM 260 Query: 530 LC 531 Sbjct: 261 RQ 262 >gi|261418728|ref|YP_003252410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC61] gi|319765543|ref|YP_004131044.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC52] gi|261375185|gb|ACX77928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC61] gi|317110409|gb|ADU92901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y412MC52] Length = 818 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 140/616 (22%), Positives = 272/616 (44%), Gaps = 26/616 (4%) Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH----VLATGYFSQGIFS 402 + + L Q + + + + + H A + + + S Sbjct: 213 AVVGIDFDAKTYEQHLQRGRQQAMWTMMAMFLASAVAYLLALHHQMERKALAVYKKTLAS 272 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + R + + + + V +LG + + L Sbjct: 273 NEHRLRRLAEMTMEGLIVY-AHGKVVEVNEAACRLLGYSESELIHLPIGDL--------- 322 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + ++E +R D I +R + G+ + + D+TEQ Sbjct: 323 VVDGSMKLNRPHEEPE-RFEIELRRKDGTAFPAEI-VRRRYDYEGEKV-TVAAVRDLTEQ 379 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K++ E + A D LTG+PN+++ + L + + V+ +++ K IND Sbjct: 380 KQNEERMRYIANHDELTGLPNKEAMYKAVERCLAEAKQHRH-EMAVIFLEVSGMKTINDF 438 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G AVGD+VL+ L + E K + R SGN F ++ + + K + A + ++ Sbjct: 439 YGYAVGDEVLLHLAQEWKE--KQGMAIGRWSGNEFIAVVSNSTH-QKAEEMAKQLIEAAD 495 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSF 700 PI + E+ VT +IG + + + +++ A++A Y A K + ++ Sbjct: 496 EPIVVNGMELYVTVNIGISVYPKDGEDAKTLIRKADIARYEARKKAASDFLFFTEPMAIR 555 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +++ ++ DL A+EN E L Y P IRL D +++G+EALI+W HP+ G +S S F+ + Sbjct: 556 LHEKMAMERDLRRALENEEFELYYQPQIRLHDRQVIGMEALIRWRHPEKGMVSPSLFIPV 615 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE+ MI IN +++ D+ P + + IN++ + + + L++ Sbjct: 616 AEQTGMIIPINEWVIRTACEQTKQLLDRF--PDLSVSINLSPYEFESRRFVDKLARLLAD 673 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P + L +E + M + ER+ +L +L+ +G+++++DDFGT S LSYL +P D Sbjct: 674 AGLPPHHLDLEITERMTM-DTERALDILSKLKGLGVTISMDDFGTGYSSLSYLTDLPIDR 732 Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 +K + S + K+ IL +II + NI ++A+ + E + L CD Q + Sbjct: 733 LKIDRSFVQHIQGKKDVILPAIIRLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYF 792 Query: 941 ASPLGFNSILKLLKER 956 + PL ++ +++ L E+ Sbjct: 793 SPPLPYDELVRFLNEQ 808 >gi|77362381|ref|YP_341955.1| hypothetical protein PSHAb0472 [Pseudoalteromonas haloplanktis TAC125] gi|76877292|emb|CAI89509.1| conserved protein of unknown function ; putative GGDEF domain protein [Pseudoalteromonas haloplanktis TAC125] Length = 699 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 138/569 (24%), Positives = 264/569 (46%), Gaps = 21/569 (3%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL--ASGSMHGPIRNW 452 + + D+ + + ++ L G + Sbjct: 136 QAQEQAMFREKMLETIFEAIPDLFFVMQEDGKILDYQASSSSSSNLYALPQQFIGS--SM 193 Query: 453 LPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + +D FR + + ++ + +++++ + + RI +S + Sbjct: 194 FDLL-PDDVSSKFRKNISQALSQKQ-MVSFQYQLTMSQGAVY-FEARINHVS----QYQQ 246 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + I DITEQ + E I A+ DNLT +PNR LDRL+ +L + + V+ I Sbjct: 247 VMVIIRDITEQHDAEELIRKQAYYDNLTSLPNRFLALDRLSHMLFEAQRNKG-HVAVLFI 305 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +KK+ND G +GD +L+ R+ ++++ D + RL G+ F ++L N Sbjct: 306 DLDNFKKVNDSFGYELGDKLLIKSAARLQQVIRKEDTIGRLGGDEFIVLLRGINCHYNAI 365 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 D + K+ P + RE+ +T SIG A + + T+S++L+NA+ AMY AK G N Sbjct: 366 DITEKLLKNFTSPFKIEGRELVLTMSIGVAMYPENGDTASDLLRNADTAMYQAKALGRNT 425 Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F + + +E + A++ +E L Y P + + ++ + G EAL++W +P Sbjct: 426 YSFFTPQMNVVIQRRLAIEEQMHGALQRNEFELHYQPQLDVKNKHVTGAEALLRWYNPVL 485 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ----ANMPPIFILINIASKDL 805 GNI EF+ IAE +I +I F++++ + + W++Q + +N++ Sbjct: 486 GNIPPDEFIPIAEHNGLIISIGKFVIKQALQLLKKWQNQCLNKGQHHKYTMAVNLSPSQF 545 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D L ++ +S+ ++L +E V+M L + K+GI L++DDFGT Sbjct: 546 RDTALLSFIKDTLSELDVKAKYLELEITEGVLMNAKLNINDTLQEITKLGIKLSMDDFGT 605 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PF+ +K + + G T K+ ++++ I M+ ++ T++A+ + + Sbjct: 606 GYSSLSYLRQYPFNVLKIDRMFINGITSKKEDCNLVKATIAMSHSLGLTVVAEGVETKEQ 665 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 + L + CD++Q + + PL +L Sbjct: 666 LVLLGELNCDFVQGYYFSKPLPEELLLDF 694 Score = 42.2 bits (98), Expect = 0.42, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 4/113 (3%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL- 479 +D R + + G G I +D + + + Sbjct: 35 YDEQRRVIYWNKGSEVLYGYTKSEATGKKIE--DLIIPSDLQEIVIAAHTHWITKGIEIP 92 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 E +R +N + N G I + I D+T+ K++ E + Sbjct: 93 AAELTLRDKNNNDVSVFSSHVMFINQYG-IKQMYCIDIDLTDVKQAQEQAMFR 144 >gi|253996588|ref|YP_003048652.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253983267|gb|ACT48125.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] Length = 447 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 137/449 (30%), Positives = 228/449 (50%), Gaps = 11/449 (2%) Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DIT K + + I AF D LT +PNR+ F DRL L SA N + ++ ID+D Sbjct: 1 MADITSNKAAAKEIEVLAFYDPLTLLPNRRLFTDRLNHALASSARSQN-KGALLFIDLDN 59 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKI 630 +K +ND LG AVGD +L+ + R+ ++ D +ARL G+ F + L + + K Sbjct: 60 FKNLNDSLGHAVGDMLLLQVAERLNNCVREGDTVARLGGDEFVVTLEDLSLQLDEAASKT 119 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + ++ P NL E +T SIG A + + + E+LK A++AMY AK G N Sbjct: 120 KLIGEKILHQVSQPYNLGGHEHQITCSIGVALFHHHEQSQDELLKQADIAMYQAKKVGRN 179 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + F S ++ DL +A+ + L Y + + + I G EALI+W HP+ Sbjct: 180 AICFFDPGMQTSINARVELERDLNIAINEQQFELFYQIQLDIHGQAI-GAEALIRWPHPE 238 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G IS ++F+ +AEE +I I ++L+ + W+ + + + +N+++K L Sbjct: 239 LGLISPAKFIPLAEETDLIIPIGSWVLDTACAQLKQWQKDTSTQGLVLSVNVSAKQLHQV 298 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + +Q I+K +P+ +KL +ES+++ + E + ++ RL+ IG+ +LDDFGT S Sbjct: 299 DFTSTVQNTINKYAINPNLLKLEITESMLLNSIEDTINIMSRLQTIGVRFSLDDFGTGYS 358 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L YL +P + +K + S + E I+R+II MA+++ IA+ + E Sbjct: 359 SLQYLKRLPLNQLKIDQSFVRDITVDESNRVIIRTIIAMAQSLGLETIAEGVETEAQRTY 418 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GC + Q + PL + LK Sbjct: 419 LLTNGCTHFQGYLLGKPLPIHDFESALKS 447 >gi|254502224|ref|ZP_05114375.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] gi|222438295|gb|EEE44974.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia alexandrii DFL-11] Length = 831 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 161/751 (21%), Positives = 304/751 (40%), Gaps = 50/751 (6%) Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263 + ++L + + W +L + L SG I +A +++ + Sbjct: 85 LINAAALAAVGLTILPSVYVLGWALLVVAVMAQMGLR---WHKSGRYPIEQASAKVIARA 141 Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 ++ + + ASI I + + Sbjct: 142 VH---------------HATILSALWAVVPIAALAVGDVQGIWIASIVTIGMICGGAFAL 186 Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 + + W+L+ + +A + I+ L V+IV Sbjct: 187 ATVPQAAFR-----------WLLVLYTVSAVSLAAANIDQSWILIALLTSFAVIIVG--S 233 Query: 384 FTVIQHVLATGYFSQ-GIFSDGERQSLAVLGS----GDIVWDWDIVRDRVTTTPDIATIL 438 T + + + S+ + G+ +L + D W+ +I + + + Sbjct: 234 STSTSWLFTSHFLSEGELRQRGDLIALMMNEIEDKDSDWFWETNIGGNLKNVSSRFVSAS 293 Query: 439 GLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G + S+ L H + +D + + LD + E V D + W Sbjct: 294 GRSVNSLQAMRLTDLAFSLSHPDAQDGY-SALDEAITEITAFRDLEIGV-DVDGEARWWA 351 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + P + G Y G+A+DITE K + + A QD LTGI NR FL + L Sbjct: 352 VSGTPAFDERGYFTGYRGVASDITEMKVANALVTQLAEQDALTGIGNRNWFLKQADLKLA 411 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 T+ +ID+D +K +ND G A GDD+L+ + R + + +LAR G+ Sbjct: 412 AQLEKRANTLTLFLIDLDNFKVVNDTSGHAAGDDLLIQVAERFRSISEGRTLLARFGGDE 471 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F + ++ FA + K P + +RE + A++GF+ + + +++++ Sbjct: 472 FAAVGEFVSD-QAAEVFANELVKVTRKPFKVGKREFAIGATVGFSRLRKTNSSVNDLMRE 530 Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G +F + +R ++ DL A E+ L + + PI+ Sbjct: 531 ADIALYKAKEGGRGQALAFAEEMEREVRERRELEADLREAFESDGLTIEFQPIVEARSGR 590 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +V E L++W HP G + F+ IAE +I + +++L++ + W D Sbjct: 591 VVSSEVLVRWQHPTRGEVVPDVFIPIAEHAGLILPMGMWVLKKACKVAAQWPDLE----- 645 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N+++ +D L E + ++ +T + R+ L +ESV + + + L LR + Sbjct: 646 TVAVNLSAVQFMDPNLVETVSDVLMETGFPGERLVLEITESVFLKDIGSASEKLDGLRDM 705 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912 GI + LDDFGT S L YL FD +K + S + E+ AI+ +II +A N+ Sbjct: 706 GIKIALDDFGTGYSSLLYLRNYNFDKIKIDKSFVDEIGEQSEGLAIIAAIIALAHNLGLE 765 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + A+ + + + L +GCD +Q + P Sbjct: 766 VTAEGVERQFQVDALRTLGCDTLQGYYFGRP 796 >gi|119486033|ref|ZP_01620095.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] gi|119456808|gb|EAW37936.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] Length = 601 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 140/446 (31%), Positives = 244/446 (54%), Gaps = 9/446 (2%) Query: 519 ITEQKKSLE----GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + ++KK LE +L A D LTG+PNR+ +++L L+ + D + V+ +D D Sbjct: 148 VEQRKKQLEVANAKLLEMALHDPLTGLPNRRFLMEQLEQSLNRAKQDSQSQFAVLFLDCD 207 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K +ND LG VGD++L++L+RR+ LL DILARL G+ F I+L S ++S ++ A Sbjct: 208 RFKVVNDSLGHLVGDELLIALSRRLETLLNPDDILARLGGDEFIILLKSIHHSQQVTQIA 267 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 ++ ++++ P L E+ + SIG A W + +L++A+ A+Y AK G Sbjct: 268 NSILEALSQPFQLEGYEVFINTSIGIALWHPNYENPEHLLRDADNAVYKAKALGRGRYHI 327 Query: 695 FRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + + + ++ +L A++ EL + Y PI+ L +IVG EAL++W HP G I Sbjct: 328 FDSTMHVAAINTLELETELHKAIKEQELVVYYQPIVVLNTGQIVGFEALVRWQHPTRGLI 387 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELC 811 S F+ IAEE+ +I + ++L + + + +W+ Q F+ +N++++ L L Sbjct: 388 SPHSFIPIAEEIGLIIPLGQWVLHQSCQQLQTWKKQNLVDDSFFVSVNLSARQLTQLNLN 447 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + +I T +P +KL +ES +M NP+ + +L + ++ GI L +DDFGT S LS Sbjct: 448 EQVDQIIHDTQINPQCLKLEITESSLMENPQIAIEILKKFKQRGIQLGIDDFGTGYSSLS 507 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL Y P DT+K + S + E ++ II +AK +E +IA+ I +++L Sbjct: 508 YLHYFPLDTLKIDQSFVKQIDENSKHLGLVPIIINIAKILEMNVIAEGIETPTQLRQLLS 567 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 + C Q + P+ ++L+ Sbjct: 568 LNCKLGQGYLFSRPVNAEEAIRLVSS 593 >gi|262376601|ref|ZP_06069829.1| predicted protein [Acinetobacter lwoffii SH145] gi|262308311|gb|EEY89446.1| predicted protein [Acinetobacter lwoffii SH145] Length = 958 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 139/567 (24%), Positives = 264/567 (46%), Gaps = 10/567 (1%) Query: 393 TGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 Q S ER L + + + ++ + D + P + G + G Sbjct: 383 RRDIQQERLSQ-ERLKLVASVLEQAAEGIFILNPELDYIDVNPHYEYLSGFERDEIIGKS 441 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + + + + F+ + + + G E + + + + I +++ G I Sbjct: 442 LFDIAVQNKSQQRTFQANIVKQI-QKIGSYDGEVYAKFLSGKESTLWLHINAVTDDEGRI 500 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 YIGI +D+TE+K + + D LT +PNR + +L L +S D V+ Sbjct: 501 THYIGIVSDLTERKLQEQRLSYLENYDTLTDLPNRFYYNYQLHQYL-VSQKDSIKEMAVI 559 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++ID+++ +N+ L GD++L + +R+ +A L+G+ F I+ + Sbjct: 560 RLNIDRFRPLNEYLSNNGGDELLRQVAQRLRMTNAEALFVAHLNGDDFAILYEISHIRPS 619 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + + ++ + P N+ ++ +T S+G A + + AE A+ AK+ GG Sbjct: 620 VQHHCERIAQAFSRPFNIYGQDHVITLSMGVAFYPDHGRQLDYLNNCAEQALNEAKNLGG 679 Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + + + ++ V ++ DL A++N+EL + Y P I D+ I G EALI+W+HP Sbjct: 680 NTIHFYSSENHSLQNKGVFLERDLRKAIQNNELIVYYQPKINFSDQSIYGFEALIRWNHP 739 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G I+ F+ +AE+ +I I ++++ A+ I W D I + +NI ++ L Sbjct: 740 EKGIIAPGLFIPLAEQTSLISDIGRLVIQQAAKQIRQWNDLGFNH-ICVSVNIVAQQLRR 798 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 +L + + I+ S + ++L +ES ++ N E + LL +++ I + LDDFGT Sbjct: 799 GQLLDDLDQAIADNQISGASLELEITESSLIENSEAVKNLLNEIKQRHIHIALDDFGTGY 858 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 S LSYL P DT+K + S + E + AI+ +++ M K + T++A+ I E ++ Sbjct: 859 SSLSYLADFPIDTLKIDRSFVCKIGENKQAAIVSAMVAMGKAMGMTVVAEGIETEEQLEY 918 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953 L + CD Q + PL L Sbjct: 919 LRDLDCDIAQGYLFSKPLPEQDATAYL 945 Score = 80.8 bits (198), Expect = 1e-12, Method: Composition-based stats. Identities = 49/321 (15%), Positives = 96/321 (29%), Gaps = 24/321 (7%) Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK 281 A+ + I + +L + I L F YL Sbjct: 95 LAVGISIAAGIFTIYYYLPQA---NPAFEDIEALTLSALLLIVTQAFGLTYLTQK----- 146 Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341 + Y + + + Y+ + + L ++ + L Sbjct: 147 LSYFCLAFLPSLLPFLLSQIYHIGHSNPFFALALNFAMIVILLCATSSYRIHSRTSRLYA 206 Query: 342 PAWILI------FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395 IL+ W L + ++ + L L L+ V + Sbjct: 207 ENDILVKNAEQQVHWTDELCQQLKTEVNKS---KDIEQQLQLSNQLLEQKVRERTYDIEQ 263 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPIRNWLP 454 + + + + LA +G WDW+I +T IL + Sbjct: 264 INHDLKNQQQNLKLAHEIAGIRPWDWNIQERSITLTNHKDEKILRDSKD----HHLQLQY 319 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRY 512 IH D F+ + + + R +R++ ++ + W+ R +S N LR Sbjct: 320 LIHPEDLAYFKRNMKQHLRGQIERYDATYRIKLSEGGWSWVHDIGRVISRDPKNKKPLRM 379 Query: 513 IGIANDITEQKKSLEGILCNA 533 +GI DI +++ S E + A Sbjct: 380 VGIRRDIQQERLSQERLKLVA 400 >gi|150377228|ref|YP_001313823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sinorhizobium medicae WSM419] gi|150031775|gb|ABR63890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sinorhizobium medicae WSM419] Length = 1071 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 131/561 (23%), Positives = 245/561 (43%), Gaps = 32/561 (5%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + S + + D V D + +L + ++ + + NF Sbjct: 529 QLSSVLESTMDSVMLLDADWRVRYLNENAKKLLQIGDEALGKK---FWKLFPEEEMGNFA 585 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + R + + W+ P + DITE++++ Sbjct: 586 KHCREVMERRVRSFFEDH--LPSLG--RWIEANASPTQD------GISIFCRDITERRRA 635 Query: 526 LE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 E + A D LTG+PNR F + L+ S + R V+ +D+D +K Sbjct: 636 EEDTLLAQKQLAHMARHDMLTGLPNRMFFRECFEQALNESR---HARMAVLCLDLDGFKA 692 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD +L +++R+ + ++ + +ARL G+ F II + + A + Sbjct: 693 INDTLGHPAGDVLLRQVSQRLIQSVRTTETVARLGGDEFAIIQPLAKSRDEAFHLAQRLI 752 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696 +++ P ++ TV SIG A ++ E++K A++A+Y AK G F Sbjct: 753 DTLSEPFSIEGAAATVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGRGTYRLFDVA 812 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + +K + A+ N E L Y P++ L + EAL++W HP+ G I+ SE Sbjct: 813 MHAQLQAHQQMKVAMRDALANREFELHYQPLVNLESRCVSCCEALLRWRHPQRGMIAPSE 872 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE I I ++L+ R W ++ + + +N++ L + Sbjct: 873 FIPIAEETGAIVLIGEWLLDEACRQAARWPER-----VSVAVNLSPVQFKHRNLVGAVAN 927 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 +S + P+R++L +E+V++ E + LL LR++G+ + +DDFGT S L YL Sbjct: 928 ALSSSHLDPARLQLEITETVLLDESEHNLELLQDLRRLGVKIAMDDFGTGYSSLGYLRSF 987 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PFD +K + + + R AI++++ + +++ T + + E + + G D Sbjct: 988 PFDKIKVDQAFVRDLPHGRESLAIVKAVAGLGQSLGMTTTVEGVETEDQLAIVNSEGFDE 1047 Query: 935 IQDSHVASPLGFNSILKLLKE 955 +Q + PL I +L+ + Sbjct: 1048 VQGYLFSRPLPAAEISRLIAD 1068 Score = 105 bits (262), Expect = 5e-20, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 4/152 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + +++ V + + R + ++W D D G Sbjct: 248 YGLLEDVDERRRAADALRESEARFRAIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEA 307 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G W+ IH +DR + I + G + E+R+R AD + W+I +P Sbjct: 308 EALG--FGWVDVIHPDDRQAVQEIFFKATAGK-GPTRSEYRLRRADGSWAWVIDVGQPRF 364 Query: 504 NSNGDILRYIGIANDITEQKK-SLEGILCNAF 534 +++G L Y+G DIT+++ + AF Sbjct: 365 SADGTFLGYVGSVLDITDRRAGEIAQQEAQAF 396 Score = 79.6 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 3/146 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I + + + + E V + W D + + P + + GL Sbjct: 120 FVVVTIVDITELRGIEETLRASEEHYRSLVDLHPQVPWIADRAGEVLEVGPRWSELTGLG 179 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G W +H D + + L +E+R+ ++ W R Sbjct: 180 EKETLGK--GWAKAVHPQDAGALQDAWRRSLTN-GTPLDWEYRLLTMTGEYRWFRARAAA 236 Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527 +++ I+R+ G+ D+ E++++ + Sbjct: 237 KRDADEKIVRWYGLLEDVDERRRAAD 262 Score = 67.3 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 48/168 (28%), Gaps = 6/168 (3%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 QP + + I A Q + S D V D+ Sbjct: 361 QPRFSADGTFLGYVGSVLDITDRRAGEIAQQEAQA---FIRSIFDSSPDCVRVLDLEGRP 417 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + I GL + W +D +S + R + R Sbjct: 418 LLMNEAGRRIFGLN-EDAPITGQTWDSIGRASDAHKVEAGWESVRHGKTARFEITVR--D 474 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 A + M + P++++ G R + I DIT+ K + + I Sbjct: 475 AGGEERCMDVIAAPITDNLGKPSRILSIWRDITDAKLASDEISRAQKH 522 Score = 48.0 bits (113), Expect = 0.009, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 5/131 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + G + V D V +L + G + L ++ + Sbjct: 17 FQYLMDGVAEPVIVKDAGSRFVFINEAACFLLDKDRNELLGRTDHDLL---PTEQADKIV 73 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDITEQKK 524 LD V + E ++ D ++ + RP+S G + DITE + Sbjct: 74 ALDRVVLSTGEGHEIEEQITTPDGTSRTLLTKKRPVSIPTGSTEEKFVVVTIVDITELRG 133 Query: 525 SLEGILCNAFQ 535 E + + Sbjct: 134 IEETLRASEEH 144 >gi|206969002|ref|ZP_03229957.1| sensory box/ggdef family protein [Bacillus cereus AH1134] gi|206736043|gb|EDZ53201.1| sensory box/ggdef family protein [Bacillus cereus AH1134] Length = 906 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 250 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + I + L +I +K + LI + FI+ + Sbjct: 251 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 365 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLAMALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 423 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + K + + E ++T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKKLNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 659 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 719 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 897 Query: 951 KLLKE 955 +LL+ Sbjct: 898 ELLEN 902 >gi|229180025|ref|ZP_04307369.1| Sensory box/GGDEF [Bacillus cereus 172560W] gi|228603234|gb|EEK60711.1| Sensory box/GGDEF [Bacillus cereus 172560W] Length = 883 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 155/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + I + L +I +K + LI + FI+ + Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLAMALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + + + + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874 Query: 951 KLLKE 955 +LL+ Sbjct: 875 ELLEN 879 >gi|229047429|ref|ZP_04193022.1| Sensory box/GGDEF [Bacillus cereus AH676] gi|228723916|gb|EEL75268.1| Sensory box/GGDEF [Bacillus cereus AH676] Length = 883 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + I + L +I +K + LI + FI+ + Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + K + + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874 Query: 951 KLLKE 955 +LL+ Sbjct: 875 ELLEN 879 >gi|228959956|ref|ZP_04121621.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799699|gb|EEM46651.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 883 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + I + L +I +K + LI + FI+ + Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + K + + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAFYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874 Query: 951 KLLKE 955 +LL+ Sbjct: 875 ELLEN 879 >gi|256112719|ref|ZP_05453640.1| diguanylate cyclase GGDEF domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 703 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|315123129|ref|YP_004065135.1| sensory box protein [Pseudoalteromonas sp. SM9913] gi|315016889|gb|ADT70226.1| sensory box protein [Pseudoalteromonas sp. SM9913] Length = 695 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 144/568 (25%), Positives = 265/568 (46%), Gaps = 14/568 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + D+ + + + L ++ G Sbjct: 130 DLSEVHKAQAEAVFNATMLKTLFEAIPDLFFVLEQNGTITDYHANNENDLYISPNQFIGK 189 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + + F+ ++ + + +E+ + + + R+R + N Sbjct: 190 K--MVDVLPEKVAQKFQVHIEKTITQDS-MVSFEYELSMPEG-VIYYEARLRLLPKKN-- 243 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + I DI+E +S E I A D+LT +PNR LDRL+ IL + + V Sbjct: 244 --QIMVIIRDISEPHRSAELIRHQAHFDSLTDLPNRFLSLDRLSQILLEVQKS-HEKAAV 300 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +D+D +KK+ND LG VGD++L++ R+ + LK D + RL G+ F +++ + N+ Sbjct: 301 FFLDLDDFKKVNDSLGHEVGDELLIAAAARLQQTLKKSDTIGRLGGDEFIVLISNLNDEN 360 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A + ++ P L+ R++ +T SIG A +S +L+NA+ AMY AK G Sbjct: 361 DALAIAERLLQAFRKPFKLVGRDLILTLSIGIAISPKDGTCASVLLRNADTAMYQAKTMG 420 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N F + R I+E + A+E +E L Y P I + IVG EAL++W + Sbjct: 421 RNTSSFFTPQMNVAMRRRFEIEEQMHGALERNEFELYYQPQIDVKTNTIVGAEALLRWHN 480 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 G I+ EF+ IAE+ +I I +F+L++ R + W+ N + +N++ + Sbjct: 481 IVLGEITPDEFIPIAEQTGLITPIGVFVLQQALRFLNEWQS-INKQNYTMAVNLSPRQFR 539 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D EL ++ + K + ++L +E V+M + L ++ ++GI L++DDFGT Sbjct: 540 DPELVNIIKHTLHKNSINNECLELEITEGVLMNSQASIHDALLQIDELGIKLSMDDFGTG 599 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL PFD +K + S +TG T+ + ++++ I M+ ++E ++A+ + + + Sbjct: 600 YSSLSYLREYPFDVLKIDRSFITGITDNKADCNLVKAAIAMSHSLEIKVVAEGVETKEQL 659 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952 L + CD Q +++ PL +L Sbjct: 660 DLLNELNCDIAQGFYLSKPLPAAKLLNF 687 Score = 38.8 bits (89), Expect = 4.2, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 2/114 (1%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 +D R + + G G L I R+ +++ Y Sbjct: 35 YDEQRRVIYWNKGSELLYGYTHQEAIGKKLEDL-IIPAPMREPVIKAHSNWIKYDIEIPA 93 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 E + + + M + + + I D++E K+ + NA Sbjct: 94 SELILSHKNGNDVAV-FSSHVMFTNQYNTKQMYCIDIDLSEVHKAQAEAVFNAT 146 >gi|240137456|ref|YP_002961927.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS sensor; putative membrane-associated protein precursor [Methylobacterium extorquens AM1] gi|240007424|gb|ACS38650.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS sensor; putative membrane-associated protein precursor [Methylobacterium extorquens AM1] Length = 714 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 148/693 (21%), Positives = 283/693 (40%), Gaps = 33/693 (4%) Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + +A + + R+ + ++ ++ R++ Sbjct: 28 GGHLLRTGSGLCLTVAGFAATALIASLSAEPTLRLAVVGGAAILALVLVCLILRRLTRSL 87 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF------TVIQHVLA 392 +A+ + GL LI ++ + A Sbjct: 88 TRAMQAAESIAPATAPAVALRTLPACASGEAPPSNGLRLIADRPRLGDGADPAILTDIAA 147 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---PI 449 + R + A+ +D + I L G++ + Sbjct: 148 LKLREDALSDRIARLNAALDTLSLGFLLYDRDHRLLVVNRRYHEIYRLPPGAVTPGMSAL 207 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---FRVRA-ADNQFHWMIIRIRPMSNS 505 + + D+ + D + + + +++ AD + + I+P++ Sbjct: 208 EVLRSNVGVGDQPD--RSEDECIAEIGVMMGADAVPTQIQHLADGRVVAVE--IQPIAGG 263 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 ++ I + TE+ + I A D +T +PNR +R+ + + + Sbjct: 264 -----GFVAIYEEATERWNAENRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETG-- 316 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ +D+D +K++ND LG AVGD++L ++ R+ L+ D +ARL G+ F II S Sbjct: 317 FAVLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVA 376 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A A + ++ P L + V SIG A + +++ A++A+Y AK Sbjct: 377 APADAATLAQRILNVVSAPYALTHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAK 436 Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G F ++ + R ++ DL A E L Y PI L +E I G EAL++ Sbjct: 437 DDGRGVFRFFEAQMDARLQARRALELDLRAAFEAEAFDLHYQPIYDLAEERISGFEALLR 496 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G +S +EF+ +AEE+ +I + ++L R R+ W D + + +N+++ Sbjct: 497 WTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREASGWPD-----GLKVAVNVSAA 551 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L +QA ++++ S R++L +ESV++ N + +L LR +G + +DDF Sbjct: 552 QFTSIALIGTVQAALAESGLSARRLELEITESVLLVNGSATVAILHGLRDLGARIAMDDF 611 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL PFD +K + S T + I+R+++ +A ++ T A+ + Sbjct: 612 GTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSLASSLGMTTTAEGVETP 671 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L GCD +Q + P+ + + LL Sbjct: 672 EQLAWLREEGCDEVQGYLFSPPVPASELPALLA 704 >gi|265994160|ref|ZP_06106717.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3 str. Ether] gi|262765141|gb|EEZ11062.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3 str. Ether] Length = 709 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694 >gi|221066710|ref|ZP_03542815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] gi|220711733|gb|EED67101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] Length = 809 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 149/635 (23%), Positives = 276/635 (43%), Gaps = 15/635 (2%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 KG + + + R AL + + V + Sbjct: 181 MALAKGDPLPAFMDVGSLPALVKQALQHQHARGRSQLHFHAQALAIPVSITVHSLQQPDS 240 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLG---SGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 Q + + + + + W + TP A ILG A+ Sbjct: 241 QGQSRLLITVEDLRKQEQLTRDLLNAQEVANIGTWLSYFDGKP-SLTPKAARILGWAADQ 299 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + L +H DR + G +E R++ W+ + Sbjct: 300 -PFEYADLLGCVHAEDRAFADAQWKKGLA--TGHYAFEMRIQDGT-SVRWVDALGTIERD 355 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + G +R G DITE+K++ + AF D LTG+PNR +D +LD++ Sbjct: 356 ATGKPIRGYGTLLDITERKRTERRMEKLAFFDALTGLPNRFHGIDLAQRLLDIAGQRGQ- 414 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + TV+ +D+D++K+IND G VGDD+L + RR +L ++ARL G+ F + + + Sbjct: 415 QATVLFVDLDRFKEINDSQGHVVGDDLLAEVARRCERMLGGDGVVARLGGDEF-MFVRAL 473 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A + +++ P+ + + V AS+G A + S + E+L+ A++AMY A Sbjct: 474 TEGNDTMALAHEVCATLSSPLRVDDLCFEVRASVGVALYPSHGHSVDELLQRADIAMYQA 533 Query: 685 KHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +GG + + + + I L A+ S L L + P I L + G+EAL Sbjct: 534 KTQGGGNCQLYDAQMGHRLQRRIALGAKLEEALAQSRLELHFQPKIALDSNTLYGVEALA 593 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W +WG +S +EF+ +AEE +I A+ + L+ AR +W P I +N+++ Sbjct: 594 RWHDEEWGWVSPAEFISVAEERGLIIALGDWSLDAAARQWRAWSSAGIAQPPVIAVNVSA 653 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 ++ + E A++ SP I+L +ES +M +P +++ + +L + G +L++DD Sbjct: 654 AQMMSDSFSERALAIMRAHGVSPRCIELEITESALMHDPAKAKRVASQLVEQGFTLSIDD 713 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+ L P +K + S + G +AI+ ++I +A ++ +A+ + Sbjct: 714 FGTGYSSLARLQSFPVSRLKIDMSFVRGMLSEPGSLAIVTAVIGLAHALKLRTVAEGVET 773 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954 + + +L + CD +Q + + + + L Sbjct: 774 QSQLDKLRDLHCDEVQGYLFSKAVPAAELARDWLT 808 >gi|254424120|ref|ZP_05037838.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196191609|gb|EDX86573.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 595 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 141/549 (25%), Positives = 263/549 (47%), Gaps = 8/549 (1%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 S D+ ++ +G A + + +L IH +D + + Sbjct: 38 SPIGTTILDLDGRFLSANRSFCQTVGYAEDELANRLFTYL--IHPDDVPILKESSKQLLS 95 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 +R Q++ R R + + + NS + ++ DITE K + A Sbjct: 96 GKRQYFQFKTRYRTKKENLLSACLSVSLIHNSQQQAIYFLLQVVDITEYK-LEPQLRHRA 154 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 F D LTG+ N+ F+D++ + D+ + ++++DID++K I D LG ++GD +L+ Sbjct: 155 FPDRLTGLANQALFVDKVEQAVAWQEHQDDTQCAILLLDIDRFKVITDRLGRSIGDQLLI 214 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 +L +R+ ++ D +A L G++F ++L + + P L E+ Sbjct: 215 ALGKRLETSIRQYDSVACLGGDKFAVLLEEIEGLDGALVVCDRIYDRLENPFKLGSYEVF 274 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDL 711 + SIG A + SS++L+NAE A+Y+AK +GG F + + Sbjct: 275 ASISIGVACSNAGYEQSSDLLRNAEAALYYAKGQGGGCYAVFDRTMHERTVALWQMATQA 334 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 AVE EL L Y P+I ++V +EALI+W+HP++G IS EF+ + EE +I I Sbjct: 335 QFAVEQRELSLHYQPVINTKTGQVVAVEALIRWNHPQYGRISPGEFIPVMEETGVITLIG 394 Query: 772 LFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L + ++ W Q P+ + +N++++ L +L +++++++T + L Sbjct: 395 SWVLRTACQQVVQWHQQLGNINPVKVHVNLSARQLAQRDLARHVESVLAETGLPKDLLWL 454 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +E+ VM N + +L +L+ + I L +DDFG S LS L +P D +K + S + Sbjct: 455 EITETAVMKNYQAGIQVLEQLKALEIGLCIDDFGIGYSSLSRLQQLPIDLLKIDRSFVQH 514 Query: 891 STE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + I+R+I+ +A N+ I+A+ I E + L +GC IQ + A P+ + Sbjct: 515 IGSRGENTEIVRTIVDLANNLGLDIVAEGIETETQLAGLRSLGCYNIQGFYFAKPMTPTA 574 Query: 949 ILKLLKERF 957 L+ +++R Sbjct: 575 ALQFIQKRN 583 >gi|229081000|ref|ZP_04213513.1| Sensory box/GGDEF [Bacillus cereus Rock4-2] gi|228702314|gb|EEL54787.1| Sensory box/GGDEF [Bacillus cereus Rock4-2] Length = 883 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 155/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + I + L +I +K + LI + FI+ + Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + + + + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874 Query: 951 KLLKE 955 +LL+ Sbjct: 875 ELLEN 879 >gi|315126134|ref|YP_004068137.1| hypothetical protein PSM_A1041 [Pseudoalteromonas sp. SM9913] gi|315014648|gb|ADT67986.1| hypothetical protein PSM_A1041 [Pseudoalteromonas sp. SM9913] Length = 746 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 144/568 (25%), Positives = 267/568 (47%), Gaps = 17/568 (2%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + S +R +L V D + +D V P T+ G + Y Sbjct: 183 QLKSTEDRLNLFAKCVESLTDALAIYDKDFRLVDINPSFLTLFGGVREQYLKKEFHLAGY 242 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 D+ +I ++ + +Q E ++R +D+ I I + N+ I Y+ + Sbjct: 243 ----DKSYIESIKNTVRKHE--HIQEEVKLRNSDHALLPFEISIDEIKNAQNQITNYVVV 296 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D+TE+KK+ + + +D T +PNR F L + + ++V D+D Sbjct: 297 YSDLTERKKTESELNNLSNRDRTTSLPNRNLFFSDLQKL-----AKQHSHHALLVFDLDN 351 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +KKIND LG +GD +L L R+ +L + D+ RL G+ F +++ + N+ L I A Sbjct: 352 FKKINDSLGHQLGDSLLAKLAMRLNKLTRENDVFYRLGGDEFALVMSNTNDILTITRMAK 411 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VES 694 +IA P + E+ +T+S+G + T +LKNA+ AMYHAK +G ++ + Sbjct: 412 QFLAAIATPFKMAGHELAITSSVGIVLFPEDGNTPEILLKNADTAMYHAKKKGNSYLFFN 471 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ R+ I+ + ++ + Y P + + ++ G+EAL+++ PK G IS Sbjct: 472 DTMNRQAVKRLQIENLMRFGLKEDHFEVYYQPKMNIRTGKLAGMEALVRFITPKKGVISP 531 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAEE I I +L + RD+ W D + +N+++K +L + Sbjct: 532 GVFIPIAEETGQIIEIGEVVLNKACRDVKQWLDAGLF-NARVAVNLSAKQFSLPDLTSRI 590 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ K ++L +E VM +P+ + ++ L GI L +DDFGT S L+YL Sbjct: 591 DVILQKNELPSYFLELEITEGTVMDDPQEAIAIMRSLSARGIHLAMDDFGTGYSSLAYLK 650 Query: 875 YIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +T+K + + + TE+ ++ SI+ +A N++ ++A+ + I L + C+ Sbjct: 651 QFPLNTLKVDKAFIDDMKTERGRNMVDSIVTIAHNLDLHVVAEGVEQASQISILEELNCE 710 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVK 961 +Q + + PL + LK++ K Sbjct: 711 TLQGYYYSKPLSKDEFTAFLKQQQSQSK 738 Score = 93.5 bits (231), Expect = 2e-16, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 10/182 (5%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 ++ ALV + I+ L+ ++ V + + +R V GSGD +WDW+ Sbjct: 28 SFNLNLNALVVSVCAIMSLVVVYLLTIVHSLRRSHSQLQLSEKRLKSTVEGSGDTLWDWN 87 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 I +V I + S ++ N IH D + +L + Sbjct: 88 IKTGKVI---RINDKYVMNSNNLVEFPPN-KSLIHPRDLTHVDYLLKKHFAEESTFFEAT 143 Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA-----FQD 536 +R++ + ++HW++ R + + ++N LR G DI++ K + + + A D Sbjct: 144 YRIKDSFGKWHWVLDRGKIIEKDANLSPLRMTGTVRDISQLKSTEDRLNLFAKCVESLTD 203 Query: 537 NL 538 L Sbjct: 204 AL 205 >gi|229111219|ref|ZP_04240773.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] gi|229129024|ref|ZP_04257997.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] gi|229146319|ref|ZP_04274690.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|228636952|gb|EEK93411.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|228654261|gb|EEL10126.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] gi|228672213|gb|EEL27503.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] Length = 883 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 161/808 (19%), Positives = 322/808 (39%), Gaps = 64/808 (7%) Query: 203 AIFLTIFYMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261 ++ + + W +I L+ + L L + I Sbjct: 81 VFYMFFLFFCLIAFCYKILKECNKWEKAFFICDICIVLTSIFTLE--WYLFNQPNLNIFA 138 Query: 262 SSSLIIFLF---------------------MYLHWNRWHAKVGYITFSGIACIAILFCMS 300 S +FL + R ++ S I F ++ Sbjct: 139 LSLGDVFLSFLYPIADLLFLLLGVSLFFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLN 198 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--------PAWILIFIWFI 352 + T + R+ +L R L+ I Sbjct: 199 NHLSTETIILLRLLYRIPILLIAIAGSISEDHNSHRNYFLVNPIIGKKALVVFPYLAVAI 258 Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVL 391 + + ++ + + + ++I +Q Sbjct: 259 LIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTS 318 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + S+ + ++ D ++ D+ + + +LG + + G Sbjct: 319 DLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC- 377 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 I D+ L+ LQ + D +++ + I P+ +G I Sbjct: 378 -FSIILDEDKHKLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISG 433 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DIT KK E I AF D +T I NR F +L ++ + ++ ++ + Sbjct: 434 SYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYL 492 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG + GD +L + +R L L+R+ G+ F II+ + + + Sbjct: 493 DLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLF 552 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGG 689 + K + + E ++T++ SIG A + S I ++ +LKNA +AMY AK Sbjct: 553 QLCNQLFKCMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNS 612 Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ Sbjct: 613 VSIYDDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPEL 672 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS EF+ IAEE I +I + LE+ + + W + I +N+++K+ + Sbjct: 673 GIISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQED 731 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + + ++ T S + L +E + M + + + L L+ +GI +++DDFGT S Sbjct: 732 FVKSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSS 791 Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + + + + + I+++II +A + ++IA+ + + + L Sbjct: 792 LAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFL 851 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C +IQ + + P+ ++ +LL+ Sbjct: 852 QKNKCQFIQGYYYSKPIHIHAFTELLEN 879 >gi|327480582|gb|AEA83892.1| sensory box protein [Pseudomonas stutzeri DSM 4166] Length = 886 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 136/576 (23%), Positives = 269/576 (46%), Gaps = 21/576 (3%) Query: 393 TGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + + + ++ ER+ ++A S + D + + I G ++ G Sbjct: 309 SRDITDRVNTELERRIAAIAFE-SQQGMLITDAQNRILRVNGAFSRISGYSAAEAIGQTT 367 Query: 451 NWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L H + + + +++ G + E R + + I + N +G+ Sbjct: 368 ALLASGRHGPDFYRSMWSSIEA-----TGVWEGEIWNRRKSGEIFPEWLTISAVRNVHGE 422 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + Y+ DIT++K + E I AF D LTG+PNR+ LDRL + ++ N + Sbjct: 423 VTHYVAAFTDITDRKAAEERIHNLAFYDPLTGLPNRRLLLDRLHQAMA-ASRRSNQLGAL 481 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-- 626 M ID+D +K IND+ G GD VL R+ ++ D +ARL G+ F ++L + + Sbjct: 482 MFIDLDNFKNINDLHGHQTGDQVLRVAAERLHAEVRASDTVARLGGDEFVVMLENLGDDP 541 Query: 627 ---SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + + + S+ L E + +ASIG + +S E++K A+++MY Sbjct: 542 LRAAAQAEHIGMKLLNSLDRSYRLNELGLYSSASIGVVLFGGEACSSDELMKRADMSMYE 601 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + F +R+ ++ ++ ++N E L + P + ++G EAL Sbjct: 602 AKISGKNALRFFDPRMQLAVQERLRLEAEIRQGLKNGEFVLSFQPQLEQNAG-VIGAEAL 660 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G +S + F+ AE +I A++L +L++ + W + + +N++ Sbjct: 661 VRWQHPQRGLLSPAAFIAQAEHAGLIHALDLQVLQQACGQLARWAATPAFADLTLSVNLS 720 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L + E + L+ ++ +P+R+KL +E++++ N + + RL++ GI ++D Sbjct: 721 AHLLYQDHFVEKLLDLLERSGANPARLKLELTETLLLDNMPEAIARMTRLKQHGIRFSID 780 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919 DFGT S +SYL +P D +K + + + + + I+R+I +A + +IA+ + Sbjct: 781 DFGTGYSSMSYLQQLPLDELKIDQTFIRRLPDDASSLTIVRAICALASGLGLEVIAEGVE 840 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E L GC Q P+ + +++ Sbjct: 841 SEAQRSVLLGNGCHRFQGYLFGKPMPAMELEEMVSA 876 Score = 55.3 bits (132), Expect = 5e-05, Method: Composition-based stats. Identities = 37/319 (11%), Positives = 90/319 (28%), Gaps = 28/319 (8%) Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIF----LFMYLHWNRWHAKVGYITFSGIACI 293 L+ L R+ A + + F +F L+ + + + + + Sbjct: 13 LLALCWLLAFTTRSWNRSGQRTAKLLAGLWFGSACIFGMLNTSIGQTGIILDARTAVLSM 72 Query: 294 AILF--CMSFYYPMVTASIARITLASIVLY------YTYFIIYHGMKGYERAVLLIPAWI 345 A LF + V A R+ + + + + R L+ A+ Sbjct: 73 AGLFGGPLVAGIAGVLAGGFRLWMGGPGVVPGLANVLLPIALGLAYRCASRRRLIGIAFW 132 Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF-----------TVIQHVLATG 394 + + + L + + + ++ L V + L ++ +L Sbjct: 133 QLLGFGVLLHLGVLGLIA-LLLPSPLGAEAVREIALPTLLILPLATATLGVLLNDLLERD 191 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q + R D++ D + ++L + G + Sbjct: 192 RIEQALRFSEARLRAITQAIPDLLLVLDEDGRYLEILCAERSLLYDEPSKLLGRRLH--D 249 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + + F + + +L E+ + R P+ G + Sbjct: 250 VMPEAEERRFLGFIQQTLNSDSPQL-IEYSLPTL-GGPKVFEGRALPLEQPPGQKRAVVW 307 Query: 515 IANDITEQKKSLEGILCNA 533 ++ DIT++ + A Sbjct: 308 LSRDITDRVNTELERRIAA 326 >gi|229191871|ref|ZP_04318842.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] gi|228591633|gb|EEK49481.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] Length = 909 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 253 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + I + L +I +K + LI + FI+ + Sbjct: 254 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 368 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLAMALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 426 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + K + + E ++T+ Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 662 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 722 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 900 Query: 951 KLLKE 955 +LL+ Sbjct: 901 ELLEN 905 >gi|225851746|ref|YP_002731979.1| diguanylate cyclase GGDEF domain-containing protein [Brucella melitensis ATCC 23457] gi|254707098|ref|ZP_05168926.1| diguanylate cyclase GGDEF domain-containing protein [Brucella pinnipedialis M163/99/10] gi|254709361|ref|ZP_05171172.1| diguanylate cyclase GGDEF domain-containing protein [Brucella pinnipedialis B2/94] gi|254713218|ref|ZP_05175029.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti M644/93/1] gi|254716428|ref|ZP_05178239.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti M13/05/1] gi|256030884|ref|ZP_05444498.1| diguanylate cyclase GGDEF domain-containing protein [Brucella pinnipedialis M292/94/1] gi|256368680|ref|YP_003106186.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM 4915] gi|260169786|ref|ZP_05756597.1| sensory box/GGDEF domain/EAL domain protein [Brucella sp. F5/99] gi|261759331|ref|ZP_06003040.1| PAS-associated C-terminal domain-containing protein [Brucella sp. F5/99] gi|294851616|ref|ZP_06792289.1| diguanylate cyclase GGDEF domain-containing protein [Brucella sp. NVSL 07-0026] gi|225640111|gb|ACO00025.1| diguanylate cyclase GGDEF domain-containing protein [Brucella melitensis ATCC 23457] gi|255998838|gb|ACU47237.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM 4915] gi|261739315|gb|EEY27311.1| PAS-associated C-terminal domain-containing protein [Brucella sp. F5/99] gi|294820205|gb|EFG37204.1| diguanylate cyclase GGDEF domain-containing protein [Brucella sp. NVSL 07-0026] Length = 703 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|212635907|ref|YP_002312432.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3] gi|212557391|gb|ACJ29845.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3] Length = 1451 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 132/561 (23%), Positives = 260/561 (46%), Gaps = 19/561 (3%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E+ L A+ + ++ D V + L+ G + N+ ++ Sbjct: 887 QAEEQLRLFERAIQNISEGMFILDNEFCFVEVNEACCDLSMLSKKDFIGTLFNF--DLYP 944 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + ++ + S + + GR E + M + I + + G++ Y+GI +D Sbjct: 945 D---SYSEQIRSILKQQ-GRWSNEVESARGNGTSFLMELTIDAIYDEQGELSHYVGIFSD 1000 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ++ +K+ E + D LT +PNR + + L ++ + T+MV+D+D +KK Sbjct: 1001 VSRRKQQEEELRKLTNNDLLTNLPNRSNLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1055 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD++L+ ++ RI + + RL G+ F I++ + A A + Sbjct: 1056 INDSLGHQVGDELLILVSERIQAAVPHHTSIYRLGGDEFAILIDKNPDIGVSAVIAKTVI 1115 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + L ++ V SIG + +L+ A++AMYHAK GGN + + S Sbjct: 1116 HAFESAFQLSAEKVVVGVSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1175 Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ ++ + + +++ + Y P I L + G+EAL++ +HP+ G I + Sbjct: 1176 LNKNAIRQLEVENLIREGIKDDLFEVYYQPKIDLKTGNMAGMEALVRLNHPEHGLIPPNS 1235 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I I +L++ WR Q + +N++SK +L + +++ Sbjct: 1236 FIPLAEENGLIVEIGDIVLKKACFAAQKWRSQGLFNG-RVAVNLSSKQFALPDLQQRIES 1294 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T + ++L +E V+ PE++ ++ +L K+G+SL LDDFGT S LSYL Sbjct: 1295 VLRLTQLPAANLELEITEGTVIREPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1354 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P T+K + + + + ++ SII +A N+ +++ + + + L + C+ Sbjct: 1355 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEETSQLSILRALKCEE 1414 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ + + + LL Sbjct: 1415 IQGYIYSKAVTEHEFTNLLHN 1435 Score = 121 bits (304), Expect = 5e-25, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 3/177 (1%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 ++I + PA L+V+LI I+ + + I ER L++ GS Sbjct: 719 TLSIEITPPWWLSTPAKALYF-LVVLLISIATIKIAMRRRVVQRQIAKSEERLKLSLWGS 777 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 GD +WDWDI ++ + + L IH D+ R L+ Sbjct: 778 GDEMWDWDIETGQIYRSNIWGS-LEFPRDGQRSGQEGEESNIHPMDQIRVRDALNKHFYG 836 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 + +RV+ + + W++ R + + + N + LR G +I+ K++ E + Sbjct: 837 ETDHFEAAYRVKGKSDDWVWILDRAKIVERDENDNALRMTGTIKNISNFKQAEEQLR 893 >gi|229071243|ref|ZP_04204467.1| Sensory box/GGDEF [Bacillus cereus F65185] gi|228711864|gb|EEL63815.1| Sensory box/GGDEF [Bacillus cereus F65185] Length = 909 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 155/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 253 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + I + L +I +K + LI + FI+ + Sbjct: 254 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 368 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 425 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 426 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 482 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 483 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 541 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + + + + E ++T+ Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 601 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 662 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 721 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 722 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 780 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 781 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 900 Query: 951 KLLKE 955 +LL+ Sbjct: 901 ELLEN 905 >gi|225626750|ref|ZP_03784789.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti str. Cudo] gi|261218214|ref|ZP_05932495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella ceti M13/05/1] gi|261314571|ref|ZP_05953768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella pinnipedialis M163/99/10] gi|261316873|ref|ZP_05956070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella pinnipedialis B2/94] gi|261320938|ref|ZP_05960135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella ceti M644/93/1] gi|265987943|ref|ZP_06100500.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella pinnipedialis M292/94/1] gi|265999654|ref|ZP_05467272.2| PAS-associated C-terminal domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|225618407|gb|EEH15450.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti str. Cudo] gi|260923303|gb|EEX89871.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella ceti M13/05/1] gi|261293628|gb|EEX97124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella ceti M644/93/1] gi|261296096|gb|EEX99592.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella pinnipedialis B2/94] gi|261303597|gb|EEY07094.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella pinnipedialis M163/99/10] gi|263095150|gb|EEZ18819.1| PAS-associated C-terminal domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264660140|gb|EEZ30401.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella pinnipedialis M292/94/1] Length = 709 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694 >gi|228954023|ref|ZP_04116052.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805589|gb|EEM52179.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 883 Score = 492 bits (1268), Expect = e-136, Method: Composition-based stats. Identities = 155/725 (21%), Positives = 312/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 I + L +I +K + LI + FI+ + Sbjct: 228 EDHNTHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAKIAES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + + + + E ++T+ Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874 Query: 951 KLLKE 955 +LL+ Sbjct: 875 ELLEN 879 >gi|30021841|ref|NP_833472.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|29897397|gb|AAP10673.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] Length = 909 Score = 492 bits (1268), Expect = e-136, Method: Composition-based stats. Identities = 161/808 (19%), Positives = 322/808 (39%), Gaps = 64/808 (7%) Query: 203 AIFLTIFYMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261 ++ + + W +I L+ + L L + I Sbjct: 107 VFYMFFLFFCLIAFCYKILKECNKWEKAFFICDICIVLTSIFTLE--WYLFNQPNLNIFA 164 Query: 262 SSSLIIFLF---------------------MYLHWNRWHAKVGYITFSGIACIAILFCMS 300 S +FL + R ++ S I F ++ Sbjct: 165 LSLGDVFLSFLYPIADLLFLLLGVSLFFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLN 224 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--------PAWILIFIWFI 352 + T + R+ +L R L+ I Sbjct: 225 NHLSTETIILLRLLYRIPILLIAIAGSISEDHNSHRNYFLVNPIIGKKALVVFPYLAVAI 284 Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVL 391 + + ++ + + + ++I +Q Sbjct: 285 LIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTS 344 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + S+ + ++ D ++ D+ + + +LG + + G Sbjct: 345 DLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC- 403 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 I D+ L+ LQ + D +++ + I P+ +G I Sbjct: 404 -FSIILDEDKHKLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISG 459 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + DIT KK E I AF D +T I NR F +L ++ + ++ ++ + Sbjct: 460 SYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYL 518 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K IND LG + GD +L + +R L L+R+ G+ F II+ + + + Sbjct: 519 DLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLF 578 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGG 689 + K + + E ++T++ SIG A + S I ++ +LKNA +AMY AK Sbjct: 579 QLCNQLFKCMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNS 638 Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + ++ R+ +++DL A++N EL+L+Y P + +I+G EALI+W+HP+ Sbjct: 639 VSIYDDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPEL 698 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS EF+ IAEE I +I + LE+ + + W + I +N+++K+ + Sbjct: 699 GIISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQED 757 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + + ++ T S + L +E + M + + + L L+ +GI +++DDFGT S Sbjct: 758 FVKSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSS 817 Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P DT+K + + + + + I+++II +A + ++IA+ + + + L Sbjct: 818 LAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFL 877 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C +IQ + + P+ ++ +LL+ Sbjct: 878 QKNKCQFIQGYYYSKPIHIHAFTELLEN 905 >gi|300715521|ref|YP_003740324.1| Sensory box-containing diguanylate cyclase [Erwinia billingiae Eb661] gi|299061357|emb|CAX58466.1| Sensory box-containing diguanylate cyclase [Erwinia billingiae Eb661] Length = 839 Score = 492 bits (1268), Expect = e-136, Method: Composition-based stats. Identities = 139/570 (24%), Positives = 255/570 (44%), Gaps = 23/570 (4%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + + R + D +W+ + + A + M G Sbjct: 277 QLMHSQRELADSESRFRDVAETASDWIWETNAQGALTYLSKRFAAVTHYDVAKMLGRSL- 335 Query: 452 WLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMSNSNG 507 +D L D + R L++ R A + P++ NG Sbjct: 336 -------DDVLQHDEHLVSDWIIQQRADGLRHALRCYSVTALGAKRICSLIANPVT-VNG 387 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 I Y G +DIT++ ++ I + D LTG+PNR + L L + Sbjct: 388 QIAGYRGTVSDITQEVEAQARIHYLSQHDALTGLPNRVYMSEFLLGRL-QAQPTLERPLV 446 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +D+D +K IND G A GD VL ++ R+ +LK D+++R G+ F +I+ + + Sbjct: 447 LISLDLDNFKPINDTWGHAAGDCVLNEVSHRLRSVLKAGDLVSRQGGDEFVLIVSNLADE 506 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 +IA ++ + P L + E+ + AS+G A + + E+L+ A++A+Y +K Sbjct: 507 AEIAACCKSLIDELRRPFMLGQHEVFLGASLGIALAPRDAMQAEELLRLADIALYKSKQE 566 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + R ++ +L A+ EL L Y P L + G EALI+W Sbjct: 567 GRNRWTWYTPEMAELLVKRREMERNLRKAIGGDELRLYYQPRYDLKKGRLEGAEALIRWQ 626 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G I F+ +AEE +I I+ ++L R D +SW P+++ +NI+ + Sbjct: 627 HPASGMIMPDSFIPLAEETGLIIDISTWVLHRACTDAMSWPS-----PMYVSVNISPVEF 681 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 L + + + + P R++L +E++ + NP+ + ++ L+ +G+ LT+DDFG Sbjct: 682 RSGHLAKRVANALHSSGLPPERLELEITENITLENPQSALEVMQALKTLGVRLTVDDFGA 741 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 + L YL PFD +K + S M ++ + ++I+ II + + T+ A+ I Sbjct: 742 GYASLGYLKTFPFDGMKMDRSYMNDFPNSPQALSIVEGIIGLGRAFALTVTAEGIETREQ 801 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++EL + C Q ++ P+ + LL Sbjct: 802 LQELQAIACQEGQGYYLGRPMPLDRFRLLL 831 >gi|307609682|emb|CBW99190.1| hypothetical protein LPW_09731 [Legionella pneumophila 130b] Length = 771 Score = 492 bits (1268), Expect = e-136, Method: Composition-based stats. Identities = 137/576 (23%), Positives = 264/576 (45%), Gaps = 16/576 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGL--ASG 443 + + + + A+ S V D+ ++ + I G Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQHA 255 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + + + + E + +F+W I + P+ Sbjct: 256 LGKGLLTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +S G + YI I ND+T+++ + +L A D+LT +PNR +DR+ + + + Sbjct: 311 DSFGYVKNYICILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D+D++K ND LG ++GD +L ++ R+ + + D +ARL G+ F I+L Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +N L+ A + K I PI + + + +T S+G + + ++K+A+L+MYH Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489 Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + ++ + + + L A++N EL+LVY P+I L +VG EAL Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W G +S ++F+ +AEE MI + + +++ + W + I +N++ Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKA-GFKNLSIAVNLS 608 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L E + ++ + ++L +ES+++ + + + L+ +G L +D Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKDMGTKLVID 668 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P D +K + S +T + AI ++II + ++ ++A+ + Sbjct: 669 DFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNLQVLAEGVE 728 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E +T GCDY Q +P +IL+ LK Sbjct: 729 NEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764 >gi|91778190|ref|YP_553398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia xenovorans LB400] gi|91690850|gb|ABE34048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia xenovorans LB400] Length = 728 Score = 492 bits (1268), Expect = e-136, Method: Composition-based stats. Identities = 129/572 (22%), Positives = 241/572 (42%), Gaps = 16/572 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ L + R S D + D P +LG S Sbjct: 152 AALVLDKLEIRRLEMARRTSQFRFEKIAGTSPDAIICADEQGLTTFWNPAAEKLLGYRSD 211 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + I L + E VRAA+ + + M Sbjct: 212 EILGRS---IDLIAPEQFTARLYQLAAAGESLTEGRTVEMMVRAANGTMIPVELSGS-MW 267 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +G R+ I DITE++++ E +L A D LT +PNR +++ L Sbjct: 268 REDGRP-RFGAILRDITERRQNEERLLRLAHIDPLTELPNRTMLREQVELALSK-----E 321 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +VM++D+D +K +ND LG + GD VLV++ RR+ + D +AR+ G+ F I+L Sbjct: 322 MTASVMMVDLDGFKDVNDSLGHSGGDAVLVNVARRLQACARSGDTVARMGGDEFAILLPG 381 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++++ A ++ +++ + + + + + ASIG A + +T E+L +A+LA+Y Sbjct: 382 LPDAVEAGQIADSVIAAVSQLLTIDGQPVNIGASIGIAMFPGDGLTVRELLSSADLALYQ 441 Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + F + +L A+ + E L Y P +RL D +VG EAL Sbjct: 442 AKAEGRHCRRFFSADLREEATLRRAYQGELARALAHQEFELHYQPQVRLADSTLVGAEAL 501 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G + F+ E + I +++ WR P + +N+ Sbjct: 502 LRWRHPQKGLLGPGAFLPAIEAGLLAPRIGDWIISMACEQAAQWRSLV--PDFRVGVNLF 559 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 +L + + A + P+ ++L +E++++ + E L L + G+ + D Sbjct: 560 GAQFRTGDLADKVLAALQAFNLPPAALELEITENIILRHDEHMLGPLRELHQRGVGIAFD 619 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 D+GT + LS L P +K + + + + AI+R+I+ + + +IA+ + Sbjct: 620 DYGTGYASLSMLKRYPLSRLKIDQTFVRAMLESPPDAAIIRAILYLGHSFGLEVIAEGVE 679 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 L + GC+ Q P+ + Sbjct: 680 TGEQAARLRKKGCETAQGFLFGKPMPAEEFAR 711 >gi|282865049|ref|ZP_06274102.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces sp. ACTE] gi|282559972|gb|EFB65521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces sp. ACTE] Length = 611 Score = 492 bits (1268), Expect = e-136, Method: Composition-based stats. Identities = 137/580 (23%), Positives = 264/580 (45%), Gaps = 25/580 (4%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + A + + D V + +LG S+ G L + DR Sbjct: 32 RELRDYRAAFRVAALPMAVVDGRGQVVRANDALGALLGTHPASLPGRRAADLVDL-ATDR 90 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + R RL+ R++ D + W + + P+++ + DI++ Sbjct: 91 -RTWQAYGEVLAGTRSRLRCTRRLKHPDGRSLWTEVTLVPLADPADGPEGALLCLEDISD 149 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD-----NLRPTVMVIDIDKY 576 + + + D +T +PNR F +RLTT L + D + R + +D+D + Sbjct: 150 RHELQLRLRHLRMHDPVTRLPNRTLFFERLTTALATAPFQDDSLPRHGRIGLCYLDLDGF 209 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELL-------KFPDILARLSGNRFGIILISENNSLK 629 K +ND LG +GD +L ++ R+ + ++ARL G+ F I++ + + Sbjct: 210 KAVNDTLGHHIGDRLLAAVAGRLTDCAEADGHRRTGGHLVARLGGDEFAILVEDSAGTHQ 269 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + + A ++ ++ P ++ + ++V+ASIG + + T + +++ A+ +Y AK G Sbjct: 270 LTELAGSVLGALERPFDVGGQRLSVSASIGVVERSVADATPTGLMQAADTTLYWAKADGR 329 Query: 690 NHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 F + L AVE E L Y P++ + D + G+EAL++W+HP Sbjct: 330 GRWTLFDPERNAHRMTRQALSATLRAAVERREFTLEYQPLVGMADGVVRGVEALVRWNHP 389 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLL 806 ++G ++ F+ IAEE I + ++L R W+ + P +FI +N+A + L Sbjct: 390 RFGMLAPHRFVPIAEEDGSIVQLGRWVLRTACRQARRWQLEHPAEPALFISVNVAVRQLW 449 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D++L + ++++T +P ++L +ES V G+ R +L L +G+ + +DDFGT Sbjct: 450 DSDLVADVAEVLAETGLAPGLLQLELTESAVTGSAGRPLRVLQELSDMGVRIAIDDFGTG 509 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPMAKNIETTIIAKDI 918 S L+YL +P +K +GS + G S+ I+ +++ +A + T+ A+ + Sbjct: 510 YSNLAYLSRLPVSVLKLDGSFVRGFRQEDGARSSPADETIVEAMVQLAHRLGLTVTAECV 569 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + L R+GCD Q + + I +L+ R P Sbjct: 570 ETSGQAERLRRIGCDTGQGWLYSRAVTPERIAELIGSRPP 609 >gi|188583519|ref|YP_001926964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] gi|179347017|gb|ACB82429.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] Length = 716 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 141/581 (24%), Positives = 264/581 (45%), Gaps = 25/581 (4%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + LA + R A+ + +D + + I GL G++H Sbjct: 126 RTRLALVEAHAELSEQNRRFDAALENMTHGLCMFDAEQRLLVWNRRYLEIFGLPEGALHV 185 Query: 448 PI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRP 501 + R + + R +D+ R L E AD + + R P Sbjct: 186 GMGQRAIIEVLVALGRYKRGLTVDAVSEGTRTSLTDEGPKAVLRELADGRVIAVTHR--P 243 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 M+ G ++ DITE++++ I+ A D LT +PNR + ++ T Sbjct: 244 MAEGGG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTRLREIGAERVEALRTG 299 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + + V+ +D+D++K +ND G AVGD +L ++ R+ ++ D++ARL G+ F +L Sbjct: 300 ADGQLAVLCLDLDRFKPVNDSFGHAVGDALLRAVAGRLRGHVRGHDVVARLGGDEFA-VL 358 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI---TSSEMLKNAE 678 ++ A + + +A P L + + S+G A + +LK A+ Sbjct: 359 SHVEDAAGAMGLAERLIEIVAAPYRLDGITVEIGMSVGIALAGAEDDLPRDIECLLKEAD 418 Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +A+Y AK G F +R+ ++ +L A+ S L Y P++ L D I Sbjct: 419 IALYEAKTGGRGTARLFEPQMDATLRERLGLERELREALAQSRFELHYQPLVDLSDNRIT 478 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G+EAL++W HP+ G ++ + F+ +AEE +I I ++L + RD +W D I + Sbjct: 479 GMEALVRWRHPERGLVNPAVFIPLAEETGLIVPIGEWVLSQACRDAAAWPDA-----ISV 533 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L + + + ++ + SR++L +ESV++ + E + L LR++G+ Sbjct: 534 AVNVSPLQLRNRGFVQSVLGALATSGLKASRLELEITESVLLDDTEVNLETLHSLRRLGV 593 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914 +++DDFGT S +SYL PFD +K + S + S AI+R+I+ + ++ T + Sbjct: 594 RISMDDFGTGYSSISYLRRFPFDKIKIDRSFVPDSAGQSDAGAIIRAIVSLGASLGITTL 653 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + E + + G +Q + P + I LL+ Sbjct: 654 VEGVETEPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 694 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%) Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 D +W D +P +LG S+ G R+ + + R Sbjct: 21 DWLWVTDAEDRFSYISPGAEPMLGRPPTSLIGTQRSAMIC---EAAGASLATYRETIAAR 77 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK----SLEGILC 531 R + + R D W I RP ++ G L Y G+ +D+TEQ + +E Sbjct: 78 RPFRELTYVYRHPDGTPRWFEISGRPHFSAEGTFLGYQGVGSDVTEQHRTRLALVEAHAE 137 Query: 532 NAFQDNLTGIPNRQSFLDRLTTI 554 + Q NR+ F L + Sbjct: 138 LSEQ-------NRR-FDAALENM 152 >gi|315502496|ref|YP_004081383.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Micromonospora sp. L5] gi|315409115|gb|ADU07232.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Micromonospora sp. L5] Length = 716 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 137/574 (23%), Positives = 258/574 (44%), Gaps = 16/574 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A Q + R G+ + + + A +LG A M N Sbjct: 145 ARDTVEQALRDSEARFRAVFTGAAIGIGIAGVDGQIIEVNQSFADMLGYAVAEM--RRMN 202 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 H +D + + +R + E R D W + + + + +G Sbjct: 203 VSALFHPDDAAGMWELYQELIEGKRDSARVEKRYYRKDGSVVWTDLAVSLIRHDDGRPRF 262 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + DIT++ + + + A D LTG+PNR F + L + D + D R + I Sbjct: 263 TVAMVEDITQRYELQQRLRFQALHDPLTGLPNRTLFFETLGDVFDGAGPDQ--RVGLCFI 320 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKI 630 D+D +K +ND LG +GD +L + RR+ + + ++AR+ G+ F I++ S+ Sbjct: 321 DLDGFKAVNDSLGHDLGDRLLKVIARRLSDCVAGRGHLVARMGGDEFVILVDSDGGIDDA 380 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + A +++ P+++ ++++ V+ASIG +++ + +++K A+ +Y AK G Sbjct: 381 VEVAELALAAVSAPVHVGDQQLAVSASIGIVECPAAETSVGDLMKAADTTLYWAKAEGRG 440 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + +D + +L A++ E L Y PI+ L+D +V +EAL++W HP+ Sbjct: 441 RWAVYDPERSAADIARSALAANLPAALDRGEFVLHYQPIVSLLDGTMVAVEALVRWQHPE 500 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G I F+ +AEE +I + ++L + RD SWR + +N+A++ D Sbjct: 501 LGLIGPDRFIGLAEETGLIVRLGAWVLRQACRDAESWRRAYPDTTPVVSVNLAARQADDP 560 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + E + + T ++L +ES VMG+ L +L +G+ L +DDFGT S Sbjct: 561 AIVETVAEALQHTGLPAELLQLELTESAVMGSAGEPLRTLHQLAGLGLRLAIDDFGTGYS 620 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS---------TEKRIAILRSIIPMAKNIETTIIAKDIY 919 L+YL +P VK G + G + I+ +++ +A +E ++ A+ + Sbjct: 621 NLAYLRRLPIHCVKLAGPFVEGIRGDGGDAVADHRDERIVDALVRLAHALELSVTAEAVE 680 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 E+ + L + CD Q +P+ + I L Sbjct: 681 TEVQAERLRALRCDTGQGRLFGAPMPADGIRARL 714 >gi|149185505|ref|ZP_01863821.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] gi|148830725|gb|EDL49160.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21] Length = 783 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 166/764 (21%), Positives = 285/764 (37%), Gaps = 44/764 (5%) Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266 + Y ++ T ++ FG L N + A + A + Sbjct: 13 FLLYRRLKNFSSGATTSLLPAFASI----FGLLWTFWNGVPQIAIAIWAAIQAAQLCFFV 68 Query: 267 IFLFMYLHWNRWHA----KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322 + + I I F + Y + L I Sbjct: 69 WLDRQIDFDDATVPEMETQWRRILILQAIGSTIWFVVFPYLAPYAEGLEIAVLGIIGTAI 128 Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382 + + A+ + + P+L+ V LI Sbjct: 129 LCGTLLVHRNAPQAALFHTLTMAPSLAVAAVM-------IGGWGAWPSLILIASFAVALI 181 Query: 383 GFTVIQHVLATGYFSQGIFSDGE----RQSLAV--LGSGDIVWDWDIVRDRVTTTPDIAT 436 G T Q G I R L S D +W + T + Sbjct: 182 GETRTQERYFVGAARAEIERRENNATVRMLLNDYEEQSSDWLWTVGPRGNMRDVTERLGA 241 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 L + G L R L + + R R+R + Sbjct: 242 ALSTDPDHLEGMPFLDLFVAGEE-----RDALATRLLERSPFRDLIVRLRVK-GDVRYWR 295 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 I RP + R G+A D+T + E + A DNLTG+ NR F +RL + L Sbjct: 296 ISARPRDDG-----RMSGVARDVTAGRLIEERVAFMAHYDNLTGLANRYLFNERLRS-LA 349 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + +D+D +K IND G VGD +L + R+ + ++ D++ARL G+ Sbjct: 350 GEQASRGSNIALFYLDLDDFKAINDTRGHLVGDRMLREVGTRLEQEVRSEDLVARLGGDE 409 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +++ + + + A + P + V+ S+G A T + E+++ Sbjct: 410 FAVLIETRAGDGLLIERAHRFLSVVRAPYEIEGHSYRVSTSVGVARCTDGDCDAEELMRR 469 Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LA+Y AK +G +++ F +R + DL A+ ++ + Y I+ L E Sbjct: 470 ADLALYAAKEKGRDNLALFEPALDRIARERRETEIDLREALTRGQMRMHYQAIVDLDTGE 529 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 GLEAL++W HP+ G I +F+ IAEE MI ++ +++ + D + Sbjct: 530 TTGLEALLRWYHPQRGIIPPGDFLTIAEETGMITSLGEWVIRQTLSDAAALP-----GNF 584 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I IN++ + + L + I T +P R++L +E V+M + L RLR++ Sbjct: 585 RIAINLSPTQVKNPNLVATVAQAIHATNIAPERVELEITEHVLMDQGAAGHVTLLRLREL 644 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912 GI + LDDFGT S L YL PFD +K + + +T AI+ +I +A + Sbjct: 645 GIRIALDDFGTGYSSLGYLRRFPFDRIKIDRTFVTDVASDLGSQAIVSTITRLADALGMD 704 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 A+ I + + L ++G Q + P+ I+ ++ER Sbjct: 705 TTAEGIEDQRQLDLLRKLGVQEAQGFLIGRPVPPEEIV--IRER 746 >gi|116670340|ref|YP_831273.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Arthrobacter sp. FB24] gi|116610449|gb|ABK03173.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Arthrobacter sp. FB24] Length = 821 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 152/552 (27%), Positives = 267/552 (48%), Gaps = 14/552 (2%) Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + ++ + + + + I+G A ++ L H D+D R + S Sbjct: 270 EMAHVGSIEYIVATGETWHSEEFSRIIGRADNALD-TREAMLGLTHPEDQDLVRQVWKS- 327 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + +E+R+ D + W+ RIR + +G LR++ DITE+K + + + Sbjct: 328 LENGADSADFEYRILKGDGELRWLHSRIRSAKSPDGRPLRFLDTVLDITERKNAEQILEW 387 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 A D LTG+PNR + L LD ++ P VM +D+D++K IND +G GD + Sbjct: 388 RARHDALTGLPNRYMVTEVLQGCLDRASR-----PVVMFVDVDRFKLINDGIGHGAGDTI 442 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 L+ L R+ ++ D +AR G+ F ++ + A +R+S +P + R Sbjct: 443 LILLGERLKAAVRAGDTVARFGGDEFVVVCENLL-MRGAKVLAERIRESTRLPFEVDGRR 501 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKE 709 I + SIG A ++ T+ ML+ A+ AMY AK GG+ + V + R+ ++ Sbjct: 502 IYLNVSIGIALA-GAEDTAELMLQGADSAMYRAKSAGGDSSAVYDVRMTGSAAGRLDLES 560 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 DL LA+ EL L Y PII + E VG EAL++W HP G+I F+ +AEE +I Sbjct: 561 DLRLALGRGELSLNYQPIIEIATETPVGFEALLRWHHPVHGSIPPDTFIPVAEETGLILP 620 Query: 770 INLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++LE R + WR + +N++ + L+ + + ++A I P+ + Sbjct: 621 IGTWVLEEAFRQVQEWRRELCGAENFSAAVNVSGRQLVAKDFPDLVEAAILAAGIDPAAV 680 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 L +E+V+M P+ + L RL ++G+ L++DDFGT S LSYL ++ T+K + + + Sbjct: 681 HLEVTETVLMDQPDLPKETLHRLSRLGVGLSIDDFGTGYSSLSYLKWLSARTLKIDRTFV 740 Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 G+ I+ ++ MA +++ +IA+ + + + EL R+ Q + PL Sbjct: 741 EELGNDPHGATIIELVLGMAGSLDLGVIAEGVETQDQLSELRRLRVPLAQGFLWSKPLPA 800 Query: 947 NSILKLLKERFP 958 + L P Sbjct: 801 ERVPAWLAAALP 812 Score = 70.0 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 6/142 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 +Q D QSL + G V D + GL G G L Sbjct: 1 MAQEHHDDLIMQSLLLDEIGQSVIGMDEQWRITYWNRASERLYGLRPGDALGMKITDLGI 60 Query: 456 I----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 I R + I ++ R E +R + + + P+ + + Sbjct: 61 IGGAEPPGQRATVQEIAETLAHGR--DWAGELWMRHRTGRDFPVHATVSPIRGRHTVPVA 118 Query: 512 YIGIANDITEQKKSLEGILCNA 533 + I+ DIT++K S + + Sbjct: 119 VVAISKDITDRKHSEAILRRLS 140 Score = 69.6 bits (169), Expect = 3e-09, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 3/123 (2%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 R S V SGD + D+ + + G +S G L D Sbjct: 136 LRRLSAMVESSGDAIIGADLTGAITSWNAGATRMFGWSSREAVGQSYRLLTTR---DASG 192 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 F + + + +G R R D + + + P+ +G + IA D+TE + Sbjct: 193 FDSDVAARIGGGTFVTGVHARWRCRDGSLIDVELTVSPVYGPDGAQVGASAIARDVTEIQ 252 Query: 524 KSL 526 + Sbjct: 253 RLK 255 >gi|218898609|ref|YP_002447020.1| sensory box/GGDEF family protein [Bacillus cereus G9842] gi|218540972|gb|ACK93366.1| sensory box/GGDEF family protein [Bacillus cereus G9842] Length = 838 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 160/756 (21%), Positives = 302/756 (39%), Gaps = 30/756 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 91 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 146 Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318 +L+ YL + + + + I L Sbjct: 147 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 206 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 207 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 260 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 261 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 320 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G D+ + LQ + + W + Sbjct: 321 GKDSAVLIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 377 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ + I AF D +T I NR F L + Sbjct: 378 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 436 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 437 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 495 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 496 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 554 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I + +++ Sbjct: 555 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 614 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 615 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 673 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 674 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 733 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 734 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 793 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 A+ + + + L R C IQ + + P+ + + Sbjct: 794 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFI 829 >gi|302865940|ref|YP_003834577.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029] gi|302568799|gb|ADL45001.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029] Length = 716 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 136/574 (23%), Positives = 257/574 (44%), Gaps = 16/574 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A Q + R G+ + + + A +LG A M N Sbjct: 145 ARDTVEQALRDSEARFRAVFTGAAIGIGIAGVDGQIIEVNQSFADMLGYAVAEM--RRMN 202 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 H +D + + +R + E R D W + + + + +G Sbjct: 203 VSALFHPDDAAGMWELYQELIEGKRDSARVEKRYYRKDGSVVWTDLAVSLIRHDDGRPRF 262 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + DIT++ + + + A D LTG+PNR F + L + D + R + I Sbjct: 263 TVAMVEDITQRYELQQRLRFQALHDPLTGLPNRTLFFETLGDVFDGAG--PEQRVGLCFI 320 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKI 630 D+D +K +ND LG +GD +L + RR+ + + ++AR+ G+ F I++ S+ Sbjct: 321 DLDGFKAVNDSLGHDLGDRLLKVIARRLSDCVAGRGHLVARMGGDEFVILVDSDGGIDDA 380 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + A +++ P+++ ++++ V+ASIG +++ + +++K A+ +Y AK G Sbjct: 381 VEVAELALAAVSAPVHVGDQQLAVSASIGIVECPAAETSVGDLMKAADTTLYWAKAEGRG 440 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + +D + +L A++ E L Y PI+ L+D +V +EAL++W HP+ Sbjct: 441 RWAVYDPERSAADIARSALAANLPAALDRGEFVLHYQPIVSLLDGTMVAVEALVRWQHPE 500 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G I F+ +AEE +I + ++L + RD SWR + +N+A++ D Sbjct: 501 LGLIGPDRFIGLAEETGLIVRLGAWVLRQACRDAESWRRAYPDTTPVVSVNLAARQADDP 560 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + E + + T ++L +ES VMG+ L +L +G+ L +DDFGT S Sbjct: 561 AIVETVAEALQHTGLPAELLQLELTESAVMGSAGEPLRTLHQLAGLGLRLAIDDFGTGYS 620 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS---------TEKRIAILRSIIPMAKNIETTIIAKDIY 919 L+YL +P VK G + G + I+ +++ +A +E ++ A+ + Sbjct: 621 NLAYLRRLPIHCVKLAGPFVEGIRGDGGDAVADHRDERIVDALVRLAHALELSVTAEAVE 680 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 E+ + L + CD Q +P+ + I L Sbjct: 681 TEVQAERLRALRCDTGQGRLFGAPMPADGIRARL 714 >gi|33415351|gb|AAQ18203.1| hypothetical protein csv013 [uncultured bacterium] Length = 742 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 140/597 (23%), Positives = 275/597 (46%), Gaps = 28/597 (4%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + ++++L + + A + +DW + + + + GL Sbjct: 124 LLAGRLRYLLRASRTRHELERSKATLARAQDLARMGSFDWRQGATDLVFSMEGMRVFGLG 183 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G ++ L I +R F+ IL + + L + +V D + + I P Sbjct: 184 GRDKLG-LKRILRMIPDEERQGFQRILREVLDHGTV-LCNDIQVNLHDGRQRILHIEAEP 241 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N ++ Y GI D+T+++ + + I A D LTG+PNR+ R ++ + Sbjct: 242 EFNEVAALIGYTGIVQDVTDRRVAEDKIKHLANFDTLTGLPNRRQIFWRSERAIEHAKRL 301 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL------------ 609 ++ ++ I +D++K IN+ LG GD++L+ ++RR+ +K + + Sbjct: 302 NHC-VAILQIGVDRFKIINENLGHHAGDELLIEVSRRLRSCVKHSEQVMEGNMEMTGMRG 360 Query: 610 -------ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 RL + F ++L + + D A + +++ P+ +E +TASIG A Sbjct: 361 HRTLEAVGRLGADEFVVLLPEIASEAEAMDTASRILQALRDPMMAAGQECFITASIGIAL 420 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSEL 720 + + ++ +++L+NA++AM AK +G N + + RV + D L A+E EL Sbjct: 421 FPAHGLSVADLLRNADVAMDMAKGQGRNTAQVYDPQLASKGRVRLDLDTALHKALERDEL 480 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 L Y P I + ++VG EAL++W I EF+ +AE +I ++L+ + + AR Sbjct: 481 VLYYQPKIDVRTSKMVGAEALMRWVR-DGKIIPPIEFIPLAEATGLINVMSLWAITQAAR 539 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 W+ Q I +N+ S+ +L + +QA++ + P ++L +E+ +M + Sbjct: 540 QAKIWQKQFGF-DASIAVNLPSRLFELPDLVDKIQAILDQEGVPPHFLELEITETGLMKD 598 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 + L RL ++GI +++DDFGT S L+YL +P +K + S + T + A+ Sbjct: 599 LQGVVPSLHRLNQMGIEISIDDFGTGYSSLAYLTTLPISELKIDRSFVHDLGTTPQSSAV 658 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +II +A+ + +IA+ + ++ L +GC Q A P+ + L Sbjct: 659 VSAIIALARALGLKVIAEGVEEVSQMEVLYNLGCHICQGYLFARPMPAAEVATWLAS 715 >gi|218232130|ref|YP_002368551.1| sensory box/ggdef family [Bacillus cereus B4264] gi|218160087|gb|ACK60079.1| sensory box/ggdef family [Bacillus cereus B4264] Length = 906 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 250 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + I + L +I +K + LI + FI+ + Sbjct: 251 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 365 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 422 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 423 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 479 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 480 HDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 538 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + K + + E ++T+ Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 659 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 718 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 719 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 777 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 778 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 897 Query: 951 KLLKE 955 +LL+ Sbjct: 898 ELLEN 902 >gi|218530457|ref|YP_002421273.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] gi|218522760|gb|ACK83345.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] Length = 805 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 143/550 (26%), Positives = 248/550 (45%), Gaps = 29/550 (5%) Query: 407 QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 + +W D V G + + Sbjct: 268 FRFLFESNPLPMWLVDQDSARFVAVNEAAVAHYGYSREAF---------------LARGL 312 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L V + R R R AD + + R ++ G +G A D+TEQ+++ Sbjct: 313 QDLSEAVAFSFARDGRLHRHRRADGSLIDVTLFERSLAFE-GRPA-VLGAAIDVTEQRRA 370 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLG 584 I A D LTG+PNR F L ++ + T ++ +D+DK+K +ND LG Sbjct: 371 EARITHMAHHDALTGLPNRALFTTCLAEVIAEHARTGAGAGAALLCLDLDKFKLVNDTLG 430 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD +L ++ RI L D++ARL G+ F ++L ++ ++ A + ++++ P Sbjct: 431 HPAGDTLLRAVADRITACLHGEDLVARLGGDEFAVLLR-TPDAGTVSAVAGRIIEALSHP 489 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 + L +RE + S+G A S +L++A+LA+Y AK GG+ F + DR Sbjct: 490 VRLGDRECQIGVSVGIACLPEHGTDSDTLLRHADLALYRAKADGGSIAHCFEAAMDSWDR 549 Query: 705 VMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + DL A +L L Y P++ + IVG EAL++W HP G I SEF+ +AE Sbjct: 550 SRRRREADLHEAFARGDLALAYQPVVGVRSRAIVGFEALLRWHHPVEGAIPPSEFVPLAE 609 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I I ++L + + W D P+ I +N++ D L ++ ++ + Sbjct: 610 ETGLIVPIGAWVLRQACAEASLWAD-----PVRIAVNLSPVQFRDPGLVATVREALALSG 664 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 +P R++L +ESV++ E + L LR +G+ + +DDFGT LSYL PFD +K Sbjct: 665 LAPHRLELEVTESVLLAASEANVATLHALRDLGVRIAMDDFGTGYCSLSYLQKFPFDKIK 724 Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S ++ G AI++++I + ++ +A+ + E+ L GC+ +Q Sbjct: 725 IDRSFVSRLGEDPHSTAIVQAVIGLGASLGIVTVAEGVETEVQFAHLRAEGCEEVQGYLF 784 Query: 941 ASPLGFNSIL 950 P+ + Sbjct: 785 GRPIPAPQAV 794 >gi|228922463|ref|ZP_04085765.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837177|gb|EEM82516.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 883 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%) Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + +SS+ +++ YL+ + + + I ++ Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227 Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + I + L +I +K + LI + FI+ + Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + ++ L L + V + S+ + ++ Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D ++ D+ + + +LG + + G I D+ L+ Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 LQ + D +++ + I P+ +G I + DIT KK E I AF Sbjct: 400 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F +L ++ + ++ ++ +D+D++K IND LG + GD +L Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + +R L L+R+ G+ F II+ + + + + K + + E ++T+ Sbjct: 516 VAKRFESCLPSHAHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 575 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712 + SIG A + S I ++ +LKNA +AMY AK + ++ R+ +++DL Sbjct: 576 SLSIGLAIYPHSGIDTATLLKNANVAMYDAKAKEFNSVSIYDDVIAKKIERRLRLEKDLP 635 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++N EL+L+Y P + +I+G EALI+W+HP+ G IS EF+ IAEE I +I Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + LE+ + + W + I +N+++K+ + + + + ++ T S + L Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890 +E + M + + + L L+ +GI +++DDFGT S L+YL P DT+K + + Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + + I+++II +A + ++IA+ + + + L + C +IQ + + P+ ++ Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874 Query: 951 KLLKE 955 +LL+ Sbjct: 875 ELLEN 879 >gi|225871868|ref|YP_002753322.1| PAS domain S-box/GGDEF/EAL domain protein [Acidobacterium capsulatum ATCC 51196] gi|225794249|gb|ACO34339.1| PAS domain S-box/GGDEF/EAL domain protein [Acidobacterium capsulatum ATCC 51196] Length = 763 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 137/731 (18%), Positives = 295/731 (40%), Gaps = 15/731 (2%) Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFS 288 + ++ FG + L + + ++S I LH + + Sbjct: 23 MILCAVMFGVSASLYSALVIIGITQPWLMWPLFAASCISLSVTLLHAQENRRRRDRLLRI 82 Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348 +A + ++ + L S + Y + + + Sbjct: 83 AVAVVTATLAGIDFFFNPPLDGGLLALLSAIYLADGLAYYRRFRRISSG--VCTTLLGFA 140 Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 W + W + A L + + +I +L + + ER Sbjct: 141 AWGLV-WPVASLLGHYAPHFQAPPVLWNLPKLFVAIGMILTLLEQETL--RMAREAERNR 197 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 S ++ ++ + +A + S Y +RD + Sbjct: 198 TLYDKSQCGLFLTNMSGTLLDCNDALARMSSRGSSQAMIGTSAVACYADPAERDLWIR-- 255 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 D E + D ++ + + G + G D+TE ++ Sbjct: 256 DILRDGSIE--NRELHLIRPDGTAWIALMNAKLRRDLRGQPMEIEGALLDVTEHRRMHRQ 313 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 +L A D LTG+ NR S D + L + + + + ++ +D+D++K IND G +G Sbjct: 314 LLWQARHDPLTGLANRASMEDAVQQALAGADANGS-QVAMICMDLDQFKWINDNHGHTIG 372 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D L + +R+ + PD+L R+ G+ F ++L + ++ A+ + K++ P+ + Sbjct: 373 DGFLRAFAQRLKTAVTAPDLLGRVGGDEFLLLLRNVSSEQDAAERLERVLKTLDKPLEVE 432 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-RVSSFRSDRVMI 707 + + S G A + ++++ ++A+ A+Y AK G + + + R D + + Sbjct: 433 GHTLRPSVSAGVAIYPCDSAHAADLRRHADHALYRAKEMGRDQYQFYSRNRKKIDDDIAL 492 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + L ++ + L Y P + D G+EAL+++ HP+ G + ++F+ IAE ++ Sbjct: 493 ERLLHRGLKENWFVLHYQPQM-FADGGFFGVEALLRFQHPERGLLQPADFLSIAERNGLL 551 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 + +++E R W+ Q P + + +N+++ + CE ++ ++ + P Sbjct: 552 HPLGEWVIEEACRQHREWQSQGL-PMLTMTVNVSAVQFNRPDFCESVERILLRQQMPPEY 610 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +ES+VM + E S + RL+++GI + +DDFGT S LSYL +P D +K + S Sbjct: 611 LELEITESLVMNDCEDSVAQMKRLKELGIRIAVDDFGTGYSSLSYLHRLPIDVLKIDRSF 670 Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + E I+ +II +A ++ ++A+ I + + L +G +Q + + Sbjct: 671 IEKLQEPHGTLPIVEAIISLANSLHLQVVAEGIEHDFQRQLLRHLGAHRLQGYLYSQAIP 730 Query: 946 FNSILKLLKER 956 + + L + Sbjct: 731 GQRLGEFLMAQ 741 >gi|148360463|ref|YP_001251670.1| GGDEF/EAL domain-containing sensory box protein [Legionella pneumophila str. Corby] gi|148282236|gb|ABQ56324.1| sensory box protein/GGDEF/EAL domains [Legionella pneumophila str. Corby] Length = 771 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 137/576 (23%), Positives = 263/576 (45%), Gaps = 16/576 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGL--ASG 443 + + + + A+ S V D+ ++ + I G Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQHA 255 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + + + + E + +F+W I + P+ Sbjct: 256 LGKGLLTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +S G + YI I ND+T+++ + +L A D+LT +PNR +DR+ + + + Sbjct: 311 DSFGYVKHYICILNDVTQRRDMEDQLLLQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D+D++K ND LG +GD +L ++ R+ + + D +ARL G+ F I+L Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHGMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +N L+ A + K I PI + + + +T S+G + + ++K+A+L+MYH Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489 Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + ++ + + + L A++N EL+LVY P+I L +VG EAL Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W G +S ++F+ +AEE MI + + +++ + W + I +N++ Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACIQVKEWHKA-GFKNLSIAVNLS 608 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L E + ++ + ++L +ES+++ + + + L+ +G L +D Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKDMGTKLVID 668 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P D +K + S +T + AI ++II + ++ ++A+ + Sbjct: 669 DFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNLQVLAEGVE 728 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E +T GCDY Q +P +IL+ LK Sbjct: 729 NEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764 >gi|313202360|ref|YP_004041018.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312441676|gb|ADQ85782.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 722 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 154/643 (23%), Positives = 275/643 (42%), Gaps = 15/643 (2%) Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 F + + + W+ + + + Sbjct: 83 VFAPVFAAQANISIRFFAASHLRDANQACLGWLFLLHPEPRQLALHQQTSLRAMADTAAR 142 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + +Q + + R A+ G+G VWDWD+ +RVT + T+LG Sbjct: 143 WLAMA------LQNQALAASNARWKFALDGAGHGVWDWDLGSNRVTFSTQWKTMLGYDEQ 196 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + ++WL +H D +F+T++D+ L E+R+ N++ W++ + M+ Sbjct: 197 DIGDDCQDWLSRVHPADLAHFKTLIDAVKSGEAQSLICEYRLLTKTNEWCWILSKGMIMA 256 Query: 504 NSNGD-ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + + R IG DIT +K+S I A D LTG+PN+ L+ + Sbjct: 257 GKDHEGPRRMIGTNTDITARKQSERLIWQQANFDALTGLPNKHLLNQLLSERI-HGDHGA 315 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 N +M++D+D +K +ND LG GD +L+ RI + DI+AR G+ F II+ Sbjct: 316 NNMVALMIVDLDNFKDVNDALGHIYGDMLLMEAASRIQAAVLPADIVAREGGDEF-IIVT 374 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + ++ + A + + + LL + ASIG A + ++ + ++K A+ A+Y Sbjct: 375 TAASLAELENTATNVLRVLGQSYELLSEVVFCAASIGIALYPQHTLSPNVLMKYADQALY 434 Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK + + +L AVE + Y PI RL E V EA Sbjct: 435 LAKSTARGQYAFYSHELEEEALKRSKLTTELRFAVEEQAFEVFYQPIFRLDTRETVKAEA 494 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G +S +EF+ +AE +I AI ++ + A + R P I +N Sbjct: 495 LVRWKHPERGYVSPAEFIPLAESTGLINAIGDWVFKEAAMFAKALRGSYA-PDFQISVNK 553 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L + A ++ I + +E +++ + + ++R G+S++L Sbjct: 554 SPIQFLTVGKLDW-AAFLTNLDLPGKAISVEITEGLLLQQSQEVNARIKKIRDTGMSISL 612 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL D +K + S + + K A+ ++II MA + +IA+ I Sbjct: 613 DDFGTGYSSLSYLSSYEIDYLKIDRSFIINLTTSSKNQALCKAIITMAHELGYQVIAEGI 672 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 E + L +GCD Q ++ PL + L + Sbjct: 673 ETEQQLHLLAALGCDLGQGYFISRPLPQQDFVAWLASSLSTTQ 715 >gi|261324330|ref|ZP_05963527.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33] gi|261300310|gb|EEY03807.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33] Length = 709 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694 >gi|256060351|ref|ZP_05450524.1| diguanylate cyclase GGDEF domain-containing protein [Brucella neotomae 5K33] Length = 703 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|115526140|ref|YP_783051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] gi|115520087|gb|ABJ08071.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 891 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 143/653 (21%), Positives = 278/653 (42%), Gaps = 21/653 (3%) Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 AS+ A+ + G + + L A I++ + R + Sbjct: 244 ASLLEPHFAAPAAIVRLTSPFDGEERLGASHKLAQAPIIVVASRGVDSVLADWRQQTVAL 303 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 A + + +I L+ + + + +R LA+ + +D Sbjct: 304 ASAALAAIAVIATLMFLLGRHLRRREDDTQRQLRLEKQRLRLAINNMTQGLTLFDAEARL 363 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 V I GL M P I + DR R +++ F+ + V Sbjct: 364 VVCNQRYLEIYGLT-TEMVPPGITLREMIQYFRDRGGDRDVIERFLCSGDDFSRGSHEVT 422 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D ++I P+ ++ DITE+K++ I A D LT +PNR S Sbjct: 423 IGDKS---LLITREPVEGG-----GWVTTHEDITERKRAEARIAYLAHNDELTDLPNRSS 474 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F + + L + D ++ +DID +K IND LG VGD +L + + + Sbjct: 475 FRQHVQSAL--ANLGDGFNVALLYVDIDDFKGINDTLGHVVGDLLLHHIASDLKRAVGKD 532 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 +ARL G+ F +++ + ++ ++ ++ + E ++ ASIG A Sbjct: 533 GFVARLGGDEFAVVVTNIEAMDEVTALTERVQSALYEFHDCGEHRLSADASIGIAIAPQD 592 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVY 724 T +++ NA+LA+Y AK G F+ + + + DL AV + + + Sbjct: 593 GKTLDDLVSNADLALYAAKSEGRRTYRFFKPEMEVALKARHLLGADLKRAVVEHQFDVHF 652 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P++ L +++VG EAL++W HP G +S +EF+ +AEE+ +I + ++L R+ + Sbjct: 653 QPLVDLRSDQVVGCEALLRWRHPTRGMVSPAEFVPVAEEIGLIDELGEWVLAESCREAAT 712 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + + +N++ + A + ++ R++L +E+V++ + + + Sbjct: 713 WPAH-----MTVAVNVSPIQFRRRTFPLKVAAALGQSGLPAQRLELEITEAVLIRDDDAA 767 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSI 902 +L LR +G+ + LDDFGT S LSYL PFD +K + S + E++ + I++++ Sbjct: 768 LAILHELRALGVKIALDDFGTGYSSLSYLHRFPFDKIKIDRSFVATLAEEKASATIVQAV 827 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +A + +A+ + L + GC +Q + P+ + +LL Sbjct: 828 VSIAAAGDKITLAEGVETIQQRDLLKQFGCQQMQGYLFSPPVPAAQLRELLDR 880 >gi|115358198|ref|YP_775336.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia ambifaria AMMD] gi|115283486|gb|ABI89002.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia ambifaria AMMD] Length = 749 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 129/573 (22%), Positives = 246/573 (42%), Gaps = 23/573 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 ++ + E+ L V + + + + P ++ + G + G + + Sbjct: 182 IARQLVHSEEQHRLVVNSLNEGILMLSPDGVVIASNPSANRMMRVK-GELVGRRLSSVIL 240 Query: 456 ---------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS- 505 I +D + L Y AD W+ P+ Sbjct: 241 YKLREDGTPIAPDDWPSRLA-----FTTATPLLDYSVGFGLADGDIIWVRGNAVPIVKPG 295 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNL 564 + +DI +++ + + A +D LTG+ NR+ +R+ + A Sbjct: 296 ETRPESVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGTHDAAAGPA 355 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R ++ ID+ +KK+ND G GD +L S+ R+ L R+ G+ F I++ Sbjct: 356 RVAILFIDLVGFKKVNDTAGHDAGDALLRSVAARLAACAGGRHALTRVGGDEFVILVDQC 415 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ +++ A + +IA P + E + SIG + + +++NA+ AMY A Sbjct: 416 DDPDELSALAREVIDTIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDA 475 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG NH F + I++ L A+ + L L Y P++ VG EAL+ Sbjct: 476 KQRGRNHFTFFTAQLNLRLQRRFAIEQSLRRAILSDALRLAYQPVVDARSGRTVGAEALL 535 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W P+ G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ Sbjct: 536 RWTSPELGPMSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSP 594 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L E + +++T P ++L +E ++M + + +L L + + +++DD Sbjct: 595 RQF-HEGLVESVGRCLAQTQLDPGALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDD 653 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + Sbjct: 654 FGTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVET 713 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 E L ++GCD Q PL + L Sbjct: 714 EAQSWFLQQIGCDMQQGYLFGRPLDPADYARRL 746 >gi|39936022|ref|NP_948298.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|39649876|emb|CAE28398.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) [Rhodopseudomonas palustris CGA009] Length = 882 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 143/612 (23%), Positives = 273/612 (44%), Gaps = 33/612 (5%) Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 + + ++ L + + V V + V+ L Q R S+AV Sbjct: 276 VVVSRSVNGVLSSW-WRELWVMVAVACASALAVAVVLFQLGRQILRQETDLRK-RYSIAV 333 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI------HINDRDNFR 465 + +D + + GL +G++ +R + H D Sbjct: 334 DNMAQGLSLFDSTGRLLLFNQRYLDLYGLPAGALKPGMRTFEIVRQLQQAGH--DPHLLE 391 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + + R +E D ++I P+ ++ +ITE+K+S Sbjct: 392 SYRAFALKHAGARSAFEVEF--PDG--RTILITREPIPGG-----GWVTTDEEITERKRS 442 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 I A D+LTG+PNR SF L L+L + + ++ IDID++K +ND LG Sbjct: 443 DSRIHHLAHYDDLTGLPNRSSFRKHLGEALNLI--EPGDQLALLYIDIDEFKIVNDTLGH 500 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGD +L +L R+ + D +ARL G+ F +++ ++ I +F ++ ++ I Sbjct: 501 PVGDQLLQALADRLRNCVGPDDYVARLGGDEFAVVM---ADASDIREFVAKLQATLRDSI 557 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSD 703 + + ++ ASIG A +++ A+LA+Y AK G F Sbjct: 558 DCAGQVLSPDASIGIALAPDHSCEVDDLIAKADLALYAAKAEGRRTYRYFMPEMDVKAKA 617 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R + +L AV + L + P++ L I G EAL++W HP G +S +EF+ +AE+ Sbjct: 618 RHELATELKRAVTEHDFRLHFQPLVDLNSGTIAGCEALLRWQHPVRGFVSPAEFIPLAED 677 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 + +I+ + ++L++ R + W + + +N++ + A +++T Sbjct: 678 IGLIEDLGEWVLDQACRVAVGWPAS-----MTVAVNVSPIQFRRATFPLKVAAALARTGL 732 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 + R++L +E++++ + E + +L +LR +G+ + LDDFGT S LSYL P D +K Sbjct: 733 AAHRLELEITEALLLQDNESTLAILNQLRDLGVKIALDDFGTGYSSLSYLHRFPIDKIKI 792 Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + TE+ I+R+I+ +A T +A+ + L +GC +Q + Sbjct: 793 DKSFVDTLTEEAGSATIVRAIVQIAAAGNKTTLAEGVETAAQRDLLRHLGCQQMQGYLFS 852 Query: 942 SPLGFNSILKLL 953 L +++ +L+ Sbjct: 853 PALPEDALARLI 864 >gi|56459864|ref|YP_155145.1| signal protein [Idiomarina loihiensis L2TR] gi|56178874|gb|AAV81596.1| Signaling protein with a MHYT sensor domain, PAS, GGDEF and EAL domains [Idiomarina loihiensis L2TR] Length = 829 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 160/797 (20%), Positives = 300/797 (37%), Gaps = 48/797 (6%) Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257 +LLA + I + +W+++ + G S L Sbjct: 33 CVALLASYTAILTLERVQIYQAKVARYSWLIVSAVISGVGVWSMHFIGMLAFELHLPMSH 92 Query: 258 EIALSSSLII------FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP------- 304 + L+ ++ F+ M + + + I + + L + Sbjct: 93 SVLLTLISVVPAIVGSFIAMKIQMSLSSVRATLIAGTVLGAGIGLMHYTGMAAMEMSAHL 152 Query: 305 -MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL----IPAWILIFIWFIGLWMAIT 359 ++ L + Y K ER + I M T Sbjct: 153 RYDPLWFVLSVFVAVSLGIIALLAYRHYKKSERTSWFRRRSAQIVVAAIIALAISGMHYT 212 Query: 360 KRLDNDI---------------IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + +VG + ++ Q + Sbjct: 213 AMIAANFYPTRAPDAVFSGHGNWLAYVVGIGSCLTAIMAIIASQIDRRLQQQQKLAQMSA 272 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 E+ + D + +D + + G + G N YI +D Sbjct: 273 EQLYEVISAIDDGLLLFDEHNRVLLANQAFTRLTGDDLERIKGSKLNIEDYIERSD--KL 330 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + + RR Q + VR + + I + + ++ DI+ + + Sbjct: 331 LENIKNSLA-RRVAWQGKVNVRKRSGTTFPVRLSISKVRYNQQKERHFVATVTDISAEVE 389 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 S E I A+ D LTG+ NR+S LD L L +++ DIDK+K +N+ LG Sbjct: 390 SSERIRYLAYNDALTGLANRRSLLDHLQDQLATYKEAGQ-NGALILCDIDKFKILNNTLG 448 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN------SLKIADFAIAMR 638 +GD +L + R+ K LARLS N F ++L ++ + Sbjct: 449 SDMGDLLLKRVAERLQSSTKANSFLARLSANEFAVVLTGLERGNSVNIKQQLLTRIYQLL 508 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P L + S G + + S+ + ++ + LA+ H+K +G V FR Sbjct: 509 DQLQQPYQLNSYTHLCSFSAGASLFDDSESNAETLMTQSGLALSHSKRKGTGEVSLFRQE 568 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++E L A++ +E L P + + + G EALI+W +S ++ Sbjct: 569 FADAVSKRVKLEEQLRNAIKQNEFELYLQPQVNIES-KPTGAEALIRWKQSDGRFVSPAD 627 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I + ++ ER + + W+ + + IN+++K E E +Q Sbjct: 628 FIPLAEETGLIVPLGYWITERACQILQQWQQSPEKAKMQLSINVSAKQFQQPEFVEQVQL 687 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ K P R+KL +ES++M + + +L+++GI LDDFGT S LSYL I Sbjct: 688 LVEKYEIRPHRLKLELTESLLMDDISSVTNKIKQLKRLGIEFALDDFGTGYSSLSYLMQI 747 Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PFDT+K + S + + ++ I+ +II + ++++ I+A+ + E L R+ CD Sbjct: 748 PFDTLKIDVSFVRNMLDSMEKAQIVYTIIQLGESLKLNIVAEGVETEEQFNYLARLNCDT 807 Query: 935 IQDSHVASPLGFNSILK 951 Q + P+ + L Sbjct: 808 FQGYLFSKPVPESEFLA 824 >gi|27375475|ref|NP_767004.1| hypothetical protein blr0364 [Bradyrhizobium japonicum USDA 110] gi|27348612|dbj|BAC45629.1| blr0364 [Bradyrhizobium japonicum USDA 110] Length = 887 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 146/621 (23%), Positives = 279/621 (44%), Gaps = 18/621 (2%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400 I A L+ + + + + + + V+ IG V+ L ++ + Sbjct: 276 IVASRLLTGAPLVIVATRSLDATLATWRTQTKFFVTVAVLSIGLLVLTLFLIFRQVTRRL 335 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HIN 459 + +R A+ + +D + + L++ + P + I H + Sbjct: 336 SLEKQRLDTALNTMTQGLLMFDQDERLIVCNRRYIEMYHLSTD-VVKPGAYFRDVIQHRH 394 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D +F +DS+ G + R R+ + N G ++ +D+ Sbjct: 395 DTGSFDGDVDSYCDGILGSVG-----RTQSAIVETADSRLIEIKNQPGAAGGWLATHDDV 449 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE+ ++ E I A D LT +PNR L + A + ++ ID+D++K + Sbjct: 450 TERIRADERIAHMAHYDALTDLPNRVLMRGHLERRVAELA--EGKPFAILYIDVDEFKGV 507 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG VGD++L + R+ + D++ARL G+ F I+ + ++ A + Sbjct: 508 NDSLGHEVGDELLRQVANRLRACVSGNDLVARLGGDEFAIVKAGTRDQAELTALAETILN 567 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P+N +E+ ASIG A ++LK A+LAMY AK G F Sbjct: 568 ALRAPVNCKGQEVPTDASIGIAIAPDHGDNLDDLLKRADLAMYAAKSEGRRTFRVFVPEY 627 Query: 700 FRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R+ ++ DL A+ E + Y P++ L + G EAL++W HP+ G +S ++F Sbjct: 628 DAKARLRRQLELDLRQALARGEFEVHYQPLVDLAANVVTGCEALLRWHHPERGMVSPADF 687 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+ +I I ++L++ + SW I I +N++ L + A Sbjct: 688 IPVAEDTGLIGEIGEWVLKQACTEAASWP-----GDIHIAVNVSPVQFRSKTLALKVAAA 742 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++++ +P R++L +E+V++ + E + +L +LR++G+ + LDDFGT S LSYL P Sbjct: 743 LAESGLAPGRLELEVTETVLIRDDEEALTILQQLRELGVRIALDDFGTGYSSLSYLHRFP 802 Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 FD +K + S ++ E I+++++ MA A+ + E + L ++GC + Sbjct: 803 FDKIKIDRSFISDIGEPEDSSPIVQAVVHMAAARRMATTAEGVETEAQREVLRQLGCSQM 862 Query: 936 QDSHVASPLGFNSILKLLKER 956 Q + + + +LL + Sbjct: 863 QGWLFSPAVPAAKLKRLLSAQ 883 >gi|264678139|ref|YP_003278046.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni CNB-2] gi|262208652|gb|ACY32750.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni CNB-2] Length = 809 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 149/635 (23%), Positives = 274/635 (43%), Gaps = 15/635 (2%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 KG V + + + R AL + + V + Sbjct: 181 MALAKGDPLPVFMDVGSLPALVKQALQHQHARGRSQLHFHAQALAIPVSITVHSLQQPDG 240 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLG---SGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 Q + + + + + W + TP A ILG G Sbjct: 241 QAQPRLLITVEDLRKQEQLNRELLNAQEVANIGTWLSYFDGKP-SITPQAARILGWPVGQ 299 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + L +H DR + G +E R++ W+ + Sbjct: 300 -PFEYADLLGCVHAEDRAYADAQWKKGLA--TGHYAFEMRIQDGT-SVRWVDALGTIEHD 355 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G +R G DITE+K++ + AF D LTG+PNR +D +LD++ Sbjct: 356 VTGKPVRGYGTLLDITERKRTERRMEKLAFFDALTGLPNRFHGIDLAQRLLDIAGQRGQ- 414 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + TV+ +D+D++K+IND G VGD++L + RR L ++ARL G+ F + + + Sbjct: 415 QATVLFVDLDRFKEINDSQGHLVGDNLLAEVARRFERTLGGEGVVARLGGDEF-MFVHTL 473 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A + ++A P+ + + V AS+G A + + + E+L+ A++AMY A Sbjct: 474 AEGNDTMALAHQVCSTLASPMRVDDLCFEVGASVGVALYPTHGHSVDELLQRADIAMYQA 533 Query: 685 KHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +GG + + + + I L A+ S L L + P I L + G+EAL Sbjct: 534 KTQGGGNCQIYDAQMGHRLQRRIALGAKLEEALAQSRLELHFQPKIALDSYALYGVEALA 593 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W +WG +S +EF+ +AEE +I A+ + L+ AR +W P I +N+++ Sbjct: 594 RWHDEEWGWVSPAEFISVAEERGLIIALGDWSLDAAARQWRAWSSAGIAQPPVIAVNVSA 653 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 ++ + E A++ SP I+L +ES +M +P +++ + +L + G +L++DD Sbjct: 654 AQMMSDSFSERALAIMRAHGVSPRCIELEITESALMHDPAKAKRVASQLVEQGFTLSIDD 713 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+ L P +K + S + G +AI+ ++I +A ++ +A+ + Sbjct: 714 FGTGYSSLARLQSFPVSRLKIDMSFVRGMLSEPGSLAIVTAVIGLAHALKLRTVAEGVET 773 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954 + + +L + CD +Q + + + + L Sbjct: 774 QSQLDKLRDLHCDEVQGYLFSKAVPAAELARDWLT 808 >gi|296504030|ref|YP_003665730.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|296325082|gb|ADH08010.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 909 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 162 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 217 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 218 YLYFYLQDDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 277 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 278 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 331 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 332 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 391 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 392 GKESAALIGKEC--FSIFLDEDKSELEVAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 448 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ E I AF D +T I NR F L + + Sbjct: 449 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 507 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 508 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIVGDEFA 566 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 567 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 625 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++ Sbjct: 626 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 685 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W + + Sbjct: 686 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 744 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 745 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 804 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 805 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 864 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 865 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 904 >gi|107026660|ref|YP_624171.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia cenocepacia AU 1054] gi|116692150|ref|YP_837683.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia cenocepacia HI2424] gi|105896034|gb|ABF79198.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia cenocepacia AU 1054] gi|116650150|gb|ABK10790.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia cenocepacia HI2424] Length = 749 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 130/568 (22%), Positives = 247/568 (43%), Gaps = 11/568 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 ++ + E L V + + + + P ++ + + + + Sbjct: 181 RIARQLARSEEHHRLVVNSLSEGILVISREGVVIASNPSANRMMRVKGELVGRRLSTVIL 240 Query: 455 YIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDIL 510 D D + L Y AD W+ P+ Sbjct: 241 RKLREDGTPIDPHDWPSRRALETATPMLDYTVGFGLADGDIIWVRGNAVPIVRPGETQAD 300 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI-LDLSATDDNLRPTVM 569 + NDI +++ + + A +D LTG+ NR+ DR+ + A R ++ Sbjct: 301 SVLVSFNDIGPVREAQQQLRYMATRDALTGLYNRRWLGDRMRELFCAHDAAAGPARVAIL 360 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ID+ +KK+ND G GD +L S+ R+ + L R+ G+ F I++ ++ + Sbjct: 361 FIDLVGFKKVNDTAGHDAGDALLRSVAARLAACGEGRYALTRVGGDEFVILVDDCDDPDR 420 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 ++ A + ++IA P + E + SIG + + +++NA+ AMY AK RG Sbjct: 421 LSVLAREVIEAIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDAKQRGR 480 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 NH F + I++ L A+ + L L Y P++ VG EAL++W P Sbjct: 481 NHFTFFTAQLNLRLQRRFAIEQSLRRALASDLLRLAYQPVVDARSGRTVGAEALLRWTSP 540 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ + Sbjct: 541 ELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQF-H 598 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L E + +++T PS ++L +E V+M + + +L L + + +++DDFGT Sbjct: 599 EGLVESVGRCLAQTRLDPSALELEITEGVLMNDTDTVLPMLEALTDMNVRISVDDFGTGY 658 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + + Sbjct: 659 SSLAYLKRFPLHNLKVDRSFVSGVPDHHDSVAITQAVVAMAHSLGMKVTAEGVETQAQSW 718 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 L ++GCD Q + PL + + L Sbjct: 719 FLQQIGCDMQQGYLFSRPLDASDYARRL 746 >gi|95931252|ref|ZP_01313971.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95132688|gb|EAT14368.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 764 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 132/499 (26%), Positives = 247/499 (49%), Gaps = 16/499 (3%) Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++ ++ + R R ++ I P+ N NG + A +IT++ + Sbjct: 269 FETVRRTQQPVRILQHR-RDKEDTLSIYEIEASPLIN-NGQFDGMVSTARNITDRLRLEA 326 Query: 528 -------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 +L + D LT +PNR F +RL + + + ++ I +D++ KIN Sbjct: 327 SLDEKESRLLYMSNHDLLTNLPNRVLFRNRLNQAI--ARNHEGNHVVLLFIGLDRFTKIN 384 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 + LG +GD+ L R L ILARL G+ F +I+ + A A + + Sbjct: 385 ESLGREIGDNTLTQAAERFHNCLAENQILARLGGDEFAVIMEDCRHPQDAAKTAKKLLEQ 444 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + PI++ EI +TASIG +S+ + ++ +A++AM AK G + + F Sbjct: 445 LIEPIHVQPNEIYLTASIGISSYPQDGESPKTLMSHADIAMTRAKSEGKDRYQFFEREMT 504 Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 ++ + ++ DL AV +EL + Y P I+L ++I G+EAL++W HP+ G IS ++F+ Sbjct: 505 QTTKRVFELENDLRKAVARNELRVYYQPQIQLDSQQITGMEALVRWQHPQRGLISPADFI 564 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I +I ++L + + + W DQ P + + +N++ L + + Sbjct: 565 PLAEETGLIVSIGEWVLRQACQQVAMWHDQGL-PAVTVAVNLSPLQFRHKALVRNVAKTL 623 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T +P+ ++L +ES++M + ++S + L ++G L +DDFGT S LSYL Y P Sbjct: 624 KETGINPACLELEVTESMIMDSIDKSTATMIELTELGAGLAIDDFGTGYSSLSYLRYFPL 683 Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + S + S E A+ S+I +A ++ ++A+ I E ++ L + C Q Sbjct: 684 TKLKIDKSFIERVTSDEHDAALATSVIALAHSLNLKVVAEGIEHEDQVQFLVKRSCHQGQ 743 Query: 937 DSHVASPLGFNSILKLLKE 955 + P+ + +LL++ Sbjct: 744 GFLFSRPVPAEDMEQLLRQ 762 >gi|283852458|ref|ZP_06369727.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio sp. FW1012B] gi|283572196|gb|EFC20187.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio sp. FW1012B] Length = 712 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 147/584 (25%), Positives = 260/584 (44%), Gaps = 24/584 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW------DIVRD--RVTTTPDIAT 436 T ++ L Q + +R G + D D + P Sbjct: 135 TAVEVALFKHRTEQELKKSEQRYRELFAGMLNAFLLLEHMPAEDGPGDFRILDANPAFEK 194 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + GLAS ++ G + I + L+ R F +D +++ Sbjct: 195 MTGLASSAVIGRT---MRGIFPGIEAFWLETLEEAASSGR---SVRFENFLSDCNLYFLA 248 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 P + D+TE+K E + F D LTG+PNR LDR+T ++ Sbjct: 249 QAYSP------QPGQVAVALEDVTERKHGEERLRYRTFHDALTGLPNRALCLDRITRAIE 302 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + N ++ +D+D++K IND LG GD +L + R+ ++ D +AR+ G+ Sbjct: 303 RARRRANYIYALLFLDLDRFKLINDSLGHLAGDALLRRVADRLRREVRQLDTVARVGGDE 362 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F ++L + A+R+ + +P + R+ +TAS+G + E+L+N Sbjct: 363 FVVLLEEIASPADALRIVKAIREHLRVPFTVEGRQFYITASMGVVLGPADYDRPEELLQN 422 Query: 677 AELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A +AM A+ G V F S + ++ +L LA++ E + Y PI L Sbjct: 423 AAIAMGSARTAGRGRVRVFDWSMRERAERVMDLETNLRLALDRGEFVVHYQPIFCLKTLA 482 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPP 793 G+EAL++W + EF+ AE+ +I + +L R + WR P Sbjct: 483 PRGVEALVRWKRSDGELVPPGEFIPAAEQSGLIIPLGALVLAEACRAFVRWRQTVLGQKP 542 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 F+ +N++++ EL + + + + + +KL +ES++M +PE + L L LR+ Sbjct: 543 FFMSVNLSARQFTQPELVKQVVTTLRRESMPAADLKLEITESILMEHPESAMLKLRGLRE 602 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETT 912 +G+ + +DDFGT S LSYL P DT+K + ++G E I+RS++ +A N+ Sbjct: 603 LGVGIGIDDFGTGYSSLSYLQRFPIDTLKIDRGFVSGMEEHGNRVIVRSVVSLAHNLGYE 662 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++A+ I + +L +GCD Q + A PL + +L+LL Sbjct: 663 VVAEGIETMGQLDDLAALGCDLGQGYYYARPLVEDRLLELLGRH 706 >gi|306842502|ref|ZP_07475153.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] gi|306287358|gb|EFM58838.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] Length = 703 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + + A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMAHIAMHDSLTGLPNRAYFAHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|332526777|ref|ZP_08402879.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus JA2] gi|332111180|gb|EGJ11212.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus JA2] Length = 780 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 143/586 (24%), Positives = 266/586 (45%), Gaps = 19/586 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ + + +R +L V + ++V D I G ++ + Sbjct: 194 TMRALREQLQRLAVQTRELKRLALVVSRTDNVVVVTDPGGRIEWVNDAFTRITGWSADEV 253 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + + N + ++ R R E R W I ++P+ + Sbjct: 254 RGRAVDGALHSPRNASADVAPFHEALRSQRPARF--EVLTRRKHGGEVWFAIDMQPLFDE 311 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + ++ +A D+T +++ E + A D LTG+PNR + + RL +D + + Sbjct: 312 DSSHRGFVSLATDVTARRELGERLRLAASTDALTGLPNRAAAIQRLERAIDHARRNPGYG 371 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD---------ILARLSGNR 616 ++ +D D++K+IND LG + GD++L + RRI L+ D ARL G+ Sbjct: 372 FALLFMDFDRFKQINDTLGHSEGDELLKQMARRIELALRPGDAVARAGGEHTAARLGGDE 431 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI--TSSEML 674 F ++L + + +A P + R + + SIG + T ++L Sbjct: 432 FIVVLDGVCRVEDARAITDRLLRDLAEPYTINGRWVQSSVSIGVVVAAAGAESRTPDDLL 491 Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A+ AMY AK G + F + S ++ I+ DL A+ EL++VY PI+ L Sbjct: 492 RDADTAMYEAKRAGRDCCMVFDPAMHERVSQQLQIENDLRRALPEGELFVVYQPIVALPG 551 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-M 791 G+EAL++W HP G ++ F+ +AEE+ +I AI +L WR + Sbjct: 552 GRATGVEALVRWRHPTRGVLTPGGFIGVAEEVGLIDAIGEHVLRESCACFADWRARLGSR 611 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 P + +N++ L L E + A++++ P ++L +ES+ + E + L +L Sbjct: 612 APRQLNVNLSRAQLRSPALPELVGAILAEHGLPPQVLQLEVTESLAAQD-EVVQATLRQL 670 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNI 909 +++G+ L LDDFGT S L+ L +P DTVK + S + + E ++ + I +A+++ Sbjct: 671 KQLGVRLALDDFGTGYSSLACLHLLPVDTVKIDRSFIAHAETIEYHRVLIEATIRVAQSL 730 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +A+ I +TR+ CDY Q PL ++ + + E Sbjct: 731 DMATVAEGIETAGQAALMTRLRCDYGQGWLYGRPLEAAALERRIAE 776 >gi|296506560|ref|YP_003667794.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|296327147|gb|ADH10074.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 785 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 163/759 (21%), Positives = 309/759 (40%), Gaps = 30/759 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 38 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318 +L+ YL + V ++ + + + Y ++ + L Sbjct: 94 YLYFYLQGDLSERSVIFLRCLYRVLLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 153 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + L L + Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 207 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 267 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S ++ G D+ + LQ + + W + Sbjct: 268 GKESAALIGKEC--FSIFLDEDKSELEVAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 324 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ E I AF D +T I NR F L + + Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 383 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIVGDEFA 442 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ D + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 443 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A++N+EL+L+Y P I + + Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIKNNELFLLYQPQIDSKAGKFI 561 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ + + W + + Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETTQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 620 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + + I + + I L +E + M + + L L+ G+ Sbjct: 621 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDERETLSKLKALKSFGV 680 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 740 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+ I + + L R C IQ + + P+ + + L Sbjct: 741 AEGIETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFL 779 >gi|254701017|ref|ZP_05162845.1| diguanylate cyclase GGDEF domain-containing protein [Brucella suis bv. 5 str. 513] gi|261751542|ref|ZP_05995251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella suis bv. 5 str. 513] gi|261741295|gb|EEY29221.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella suis bv. 5 str. 513] Length = 703 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 VFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|197118094|ref|YP_002138521.1| response receiver sensor diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] gi|197087454|gb|ACH38725.1| response receiver sensor diguanylate cyclase/phosphodiesterase, GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 869 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 131/445 (29%), Positives = 230/445 (51%), Gaps = 7/445 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 EQ+ + + A D +T +PNR S + RL L+L+ + R V+ ID+D++K IN Sbjct: 424 EQELHEQRVEYLAHYDMVTKLPNRFSLMARLGQALELAKR-FSSRLAVIFIDLDRFKNIN 482 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L + R+ + ++ DI+ARL G+ F ++L N+++ A ++++ Sbjct: 483 DSLGHHIGDRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISAAHAVRKIQQT 542 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 ++ + E+ +T SIG + + + T E++K+A+LAMYHAK G N + F Sbjct: 543 LSQGYTVESHELNITPSIGISVYPTDGETVQELMKHADLAMYHAKSAGRNSYQFFTQEMN 602 Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + + + DL A+E EL L Y P I L ++VG+EAL++W HP G ++ F+ Sbjct: 603 LTVQARLVLESDLRTALERDELMLHYQPQIDLKSGDVVGVEALLRWRHPVRGAVAPDVFI 662 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AE+ +I +I F L+ + W Q P+ + +N++++ + L + ++ Sbjct: 663 PVAEDTGLILSIGEFALKSACEQLALWISQGLG-PLRMAVNLSARQFKQSNLPSLLADIL 721 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + T + ++L +ES M +P + L L LR++G+ L +DDFGT S LSYL P Sbjct: 722 AATGVAAHLLELEITESSAMDDPNSAILHLRTLREMGVKLAIDDFGTGYSSLSYLKLFPV 781 Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 + +K + S + G I + I +A N+ ++A+ + E + L CD +Q Sbjct: 782 NRLKIDRSFVRGIDTDSEDAEIAAATITLAHNLGKEVVAEGVETEAQCRFLKGQQCDILQ 841 Query: 937 DSHVASPLGFNSILKLL-KERFPLV 960 + PL I L R P Sbjct: 842 GYFFSEPLSAAGIASYLAANRRPPT 866 >gi|302538187|ref|ZP_07290529.1| conserved hypothetical protein [Streptomyces sp. C] gi|302447082|gb|EFL18898.1| conserved hypothetical protein [Streptomyces sp. C] Length = 529 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 128/509 (25%), Positives = 232/509 (45%), Gaps = 16/509 (3%) Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H +D + + V R + E D W + + + +++G + + Sbjct: 15 HPDDTPHVWRMYGELVRGEREHYRVEKPYYRHDGTVLWTNLTVSLLRDADGVPQYQLALM 74 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D TE++ + A D LTG+PNR F +RL L R + +D+D + Sbjct: 75 EDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKAL---GGPPGSRFGLCYLDLDGF 131 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILI-----SENNSLKI 630 K +ND LG + GD +LV + R+ +++ARL G+ F + E+ K+ Sbjct: 132 KTVNDSLGHSAGDRLLVEVADRLQSCATGPGEVVARLGGDEFVALTTSPAGSGEDPGEKV 191 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 D A+ + +++ PI L RE++V SIG + + T +E+L++A++ MY AK GGN Sbjct: 192 TDLAVRILSALSTPIRLEGRELSVRGSIGIVEGCAGERTPAEVLRSADITMYRAKAAGGN 251 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 E + + L A+E E ++ Y P++ + D + G EAL++W HP+ Sbjct: 252 RFEFADAEADARAITRHGLTNALPAALERGEFFIEYQPLVHMHDGSVHGAEALVRWSHPQ 311 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 +G + F+ +AE +I + ++LE R +W+ Q + + +N++ L Sbjct: 312 YGVLGPDRFIPLAERTGLIVPLGRWVLEESVRQARTWQRQHGGAALRVNVNLSPTQLHHP 371 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 L ++ + +P + L +ES ++G + L RL +G+ + LDDFGT S Sbjct: 372 GLVADTVRVLEASGLAPGALCLEVTESALIGADDELLEPLRRLAALGVDIALDDFGTGYS 431 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 L+ L +P +K + S G + I+ I+ +A ++E + + + Sbjct: 432 NLANLRRLPVSVLKLDRSFTQGMQQQPADPVDVKIVEGIVSLAHSLELAVTVEGVETGAQ 491 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 +L +GCD Q + A P + I L Sbjct: 492 AAQLRALGCDTAQGWYYARPGAPDRIHAL 520 >gi|253997601|ref|YP_003049665.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253984280|gb|ACT49138.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 865 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 152/690 (22%), Positives = 295/690 (42%), Gaps = 28/690 (4%) Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340 + + I + + + P + + + + + + G Sbjct: 188 RCYQLLAWIILFVCVELIIVSAVPDLNKQFILSMFVILPMLIWASMSFGLVGG----SFF 243 Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY--FSQ 398 + I +W + + + + +V L+ ++ L + Sbjct: 244 VIILSSIAVWVTSQG---SGNFYSHDLSEGVFSLWTFMVALVVTMLLISALQSERNLAHM 300 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 I + ++ + G+ D + D V P I G + G + I Sbjct: 301 TIQKNDKKLRSVIDGAFDAIVTIDSAGLLVEFNPAAERIFGYKKEDVLGK--SMPDLIIP 358 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRV----RAADNQFHWMIIRIRPMSNSNGDILRYIG 514 N + R+ AD + + + + ++N + G Sbjct: 359 ARYRNAHHAGHQQYKMTGVTHIFNQRIELVGMRADGSEFPIELTLTALKDNN--LSLVTG 416 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 DI+EQK++ + I A+ D LT +PNR+ DR + ++ ++ ID+D Sbjct: 417 FVRDISEQKRARQEIENFAYYDALTSLPNRRLLADRYQHAMSIAQRA-KTYCALLFIDLD 475 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LK 629 K+K +ND G VGD +L+ + RI ++ D +ARLSG+ F +IL S + + + Sbjct: 476 KFKVLNDTKGHDVGDQLLIEVAHRIQHTVRAGDTVARLSGDEFVVILESLDQNASIAYQQ 535 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +++ A + + L E +ASIG + + +T + L++A+ AMY +K GG Sbjct: 536 VSEIAQKLLAELNRNYYLSLFEFATSASIGVTLFNDNALTFEDHLRHADTAMYLSKDSGG 595 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + + ++ L LA+ N ELYL Y PI+ + +++V E L++W HP Sbjct: 596 NTYRFYDQLTQESIEKNFALEAALGLALANQELYLNYQPIVNVA-KQVVAAEVLLRWSHP 654 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 GN+S EF+ IAE+ +I I ++LE+ + +W + I + +NI++K L Sbjct: 655 TLGNVSPVEFIPIAEKSNLIIKIGHWVLEQACEQLKTWEASPVLGQIKLSVNISAKQFLY 714 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + ++ ++++T +PS +KL +E+ V+ N + +G LR++G+ + LDDFG Sbjct: 715 INFVQELREILARTGINPSLLKLELTETAVIDNMDDVIHKIGILRQMGVRIALDDFGIGH 774 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L YL +P +K + S + + AI++ ++ + K I I+A+ + + Sbjct: 775 SSLVYLKKLPVTQIKIDQSFVHDVLTDSNDAAIIQMVLAVGKTIHCDIVAEGVEQVEQFE 834 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GCDY Q + + P+ + + + Sbjct: 835 LLREFGCDYFQGYYFSRPVNVANFEQFVSA 864 >gi|148558900|ref|YP_001258245.1| sensory box protein [Brucella ovis ATCC 25840] gi|148370157|gb|ABQ60136.1| sensory box/GGDEF domain/EAL domain protein [Brucella ovis ATCC 25840] Length = 703 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 246/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD++L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDELLQKVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A + Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNTD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|72161014|ref|YP_288671.1| diguanylate cyclase/phosphodiesterase [Thermobifida fusca YX] gi|71914746|gb|AAZ54648.1| diguanylate cyclase/phosphodiesterase [Thermobifida fusca YX] Length = 901 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 152/754 (20%), Positives = 297/754 (39%), Gaps = 25/754 (3%) Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW--RACSEIALSSSLIIFLFMYLHWNR 277 A V + F L + + +G + ++IA+ L + H R Sbjct: 144 SYVCAAAVFSTVWLVLFQPLYQELGGNAGAMAFALVYPVTDIAVVCLLAPLVLTSPHSTR 203 Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 + F I ++ + A + + I + A Sbjct: 204 RAVLLAMGAFVTICAADLIGAVGRLSGEAVAGGIEYPVRLLGFLLLGAIPAVVKRKPGTA 263 Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--------LIGFTVIQH 389 I L + + I L + V+ L+ + Sbjct: 264 PRRITGRGLYRVAPEIAAVTALSTAAVVITIAGLRAEGIAPVLPLTAGSAVLVLLVRMVG 323 Query: 390 VLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 ++ I ER SGDI+ + +P + G G Sbjct: 324 LMDETTVLARIVQTRERHLHDLAEHSGDIIVILEEDCRICYMSPGAGAMFGYRDGDPL-L 382 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +H D + + RVRAAD + + + G+ Sbjct: 383 AEPVTSLVHPEDLPDLAAAAAELRNG-AESARVRARVRAADGTWRHTTSTVS-VYERPGE 440 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR--- 565 +R++ DI+ Q + + + F D +TG+PNR +R+ +L A + R Sbjct: 441 PVRFLLTTRDISAQVELQKQVDHLTFHDGVTGLPNRAYLEERVREVLSGHAEAEGGREQP 500 Query: 566 -PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 V+ +D+D + +ND G A GD +L + R+ +L D LAR + F ++ Sbjct: 501 EVAVIFLDLDGFTAVNDSAGHAFGDYLLAQVGHRLRAVLDTGDTLARWGSDEFVALVEDR 560 Query: 625 NNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + D A M + I P + +R++ VTAS+G A + I +E+L+NA++AM Sbjct: 561 PRADSVVDLAERMIQVIEGEPFPVADRDVIVTASVGVA-FAEPGIDGAELLRNADMAMAR 619 Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK GG VE + + + +R+ ++ +L A+ L Y P++ L ++ +EAL Sbjct: 620 AKEHGGGRVEVYAAHMHAQVVERLELQTELRQALAEHAFVLEYQPVVSLETSQVTAVEAL 679 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W + EF+ AEE +I + ++L + + WR I + +N++ Sbjct: 680 VRWRRADGSLVPPEEFLGPAEESGLIVPLGEWILREACQKVAVWRATTG-LDIGLSVNVS 738 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ +L + ++ +++++ + + + E V++ NP + L +LR++G+ L +D Sbjct: 739 ARQVLSAGFVQSVEEVLAESGLNAEALTVEVDEEVLLENPVVAAEHLTKLRELGVRLAVD 798 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919 DFG + LS+L + D +K + S + + R++I + +++ ++A+ I Sbjct: 799 DFGMGHASLSHLRRLRVDEIKIDPSFVRDLDADETVTLLTRTLIRLGQDLGVQVVAEGIE 858 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ L MGC Y Q V P+ + L+ Sbjct: 859 HPWQLRRLREMGCAYGQGFLVGRPMDAAGVEALV 892 >gi|288553530|ref|YP_003425465.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4] gi|288544690|gb|ADC48573.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4] Length = 573 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 136/563 (24%), Positives = 262/563 (46%), Gaps = 17/563 (3%) Query: 397 SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 +Q FSD E++ +++ S ++ + + V + + L Sbjct: 18 TQAGFSDLEKEYMSLFEHSPYLLLVINAAGECVRVNEAGLHMNEWTRKEIINQKIEHLTD 77 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 I+ D + ++ V + ++ + + + I + G + +G+ Sbjct: 78 IY--DEKAWDEVMSGNVSHSEKAGSVDY-----THSYVYTWIPTIIEHKAAGAV--VLGM 128 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 E + + + A +D LT +PNR+ F++ L L +A + V+ ID+D+ Sbjct: 129 KKSAAECSEQQDEVYRLANEDPLTNLPNRRCFMNYLENKLLHAA-SSKEKLAVLFIDLDR 187 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG GD VL + R+ L ++ARL G+ F +++ + Sbjct: 188 FKYVNDTLGHLFGDRVLKHIAERLQAHLPEKSMIARLGGDEFVVVMTDVKEKEEPVSLTE 247 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + I P+ + E T+T S+G A + I + +L +A+ AMY AK +G + +E + Sbjct: 248 DLLTIIREPLIMDGFEFTLTGSVGIALSPENGIDAEALLTSADAAMYRAKAKGSDRLEVY 307 Query: 696 RVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++ ++ DL A++ E L Y P L ++ G E L++W HP G IS Sbjct: 308 NRDVYQEFSRYFHVENDLRKAIDRGEFALYYQPQFCLESGDVCGEEVLVRWKHPIEGTIS 367 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ IAEE +I I ++L R W ++ P + + +N++ K L + + Sbjct: 368 PGEFISIAEETGLIIPIGEWILREACRQKAKWINE-GYPKVPMSVNLSLKQFLQHNIVHT 426 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ ++ +T P + L +ESV + + +R+ +L +L K+G+ ++LDDFGT S L Y+ Sbjct: 427 IEKILKETKLPPEYLDLEITESVTV-DLDRTLDILNQLIKVGVRISLDDFGTGYSSLQYV 485 Query: 874 GYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 G +P +K + S + + + AI+ II + +++E +IA+ + + + L + G Sbjct: 486 GQLPVHELKIDQSFVKKIGKGKEGEAIISMIIHLGRSLELKVIAEGVETKEQLDFLQKQG 545 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 CD +Q + A PL + L+ Sbjct: 546 CDLVQGYYYAKPLSTEEYEQYLR 568 >gi|73539344|ref|YP_299711.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Ralstonia eutropha JMP134] gi|72122681|gb|AAZ64867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Ralstonia eutropha JMP134] Length = 1076 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 131/592 (22%), Positives = 251/592 (42%), Gaps = 19/592 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ + + Q R + + V +D +L Sbjct: 462 SLWILTDLDELWHARQQAAVQAGRYASLADHAPMCVITFDEDGRITDINRTGQHMLWYPG 521 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-------------QYEFRVRAAD 489 + IR ++ + R + L + E+ Sbjct: 522 PAQGAGIRYADLHVADELAERARDLTRELGETIAPGLPALVAKARLGLVDEREWTWVRKG 581 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 + + +R + +G +Y IA D+TE+ + E I A D LTG+PNR + Sbjct: 582 GSRVPVQVTLRELPAEDGQPRQYQAIACDLTERHRVDEYIRHLALHDALTGLPNRAELTE 641 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 R +L + R ++++D+D +K IND LG VGDDVL ++ R+ ++ D++ Sbjct: 642 RCEAVLLHARRHGE-RVALLLLDLDHFKHINDSLGHPVGDDVLRTIADRLKAAVRQGDLV 700 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 AR+ G+ F ++L + + A + ++ + + + + VT S+G A + + + Sbjct: 701 ARMGGDEFAVVLGGLRHDTEAELAASKILARVSEALEIGGQRLRVTPSLGIAMFPADGES 760 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPI 727 +++LK+A+ A+Y AK G + F + R+ I+ L AV+ E L Y PI Sbjct: 761 LTDLLKSADAALYAAKQGGRAQLRRFASEMAEASLARLTIEGLLRRAVDEQEFTLRYQPI 820 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + + G+EAL+ W P+ G + SEF+ IAE+ +I A+ + L DI + R Sbjct: 821 VDTSTLAVTGVEALMAWHTPERGMMQPSEFIPIAEQCGLIGALGEWALATACSDIQALRT 880 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 I + +NI+ L + + + + P + + +E +++ E + Sbjct: 881 ALGR-DIEVAVNISPLQLRQPGFPDLVARTLQQAGLPPGSLTIEVTEGILVEGGETTIDT 939 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPM 905 RLR++G+ L++DDFGT S L YL +P +K + S + + +II + Sbjct: 940 FLRLRELGVQLSIDDFGTGYSGLHYLTRLPISRLKIDKSFVDDVARPGHDQVVAAAIIAL 999 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + ++A+ + + L GCD +Q +G +++ ++L F Sbjct: 1000 GHQLHLKVVAEGVETMAQFEFLRAQGCDALQGYLFCRAVGPDTLREVLDSGF 1051 >gi|120610219|ref|YP_969897.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120588683|gb|ABM32123.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] Length = 687 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 130/626 (20%), Positives = 254/626 (40%), Gaps = 20/626 (3%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400 + W + + L D + + + G ++ + I Sbjct: 64 LAFWSQDLAGLRAGIHSYSGMLRPDGSLVPVDRRVAAVESPEGMPLLVLGMLDRSEQASI 123 Query: 401 FSDGERQ----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + ER + + D + D+ +A + + + + Sbjct: 124 QDELERLLSELRATLDSAADGMLVCDMGGRVRAFNQRLAWLWNMPDDLLVRRDDAAVEAH 183 Query: 457 HIN---DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 D D +R L + +R + R P S+G + + Sbjct: 184 MAAQVTDADAYRARLLGIAQFPEEETLDILHLRT--GTV--IERRSVPQM-SHGRPMGRV 238 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 D+T Q + + I A+ D LTG+PNR + + L+ + ++ ID+ Sbjct: 239 YSFRDLTLQHAAQKRIEQLAYSDVLTGLPNRLLLSRCVASALETARAQGGG-FAILFIDL 297 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K IND LG GD VL + +R+ L+ D+L RL G+ F + L E ++ Sbjct: 298 DRFKIINDSLGHLFGDRVLQLVAQRLRGCLRQNDMLCRLGGDEFVLHL-DEGDASMAEAV 356 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + + + P L ++ SIG A T +++K A+ AMY K RG Sbjct: 357 ACRILEEMRQPFMLDGMGFSIQCSIGIALHPRDGETLDDLIKQADTAMYRVKERGRGSYG 416 Query: 694 SFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + R+ ++ + A++ + + Y P + + +VG EAL++W+ P G Sbjct: 417 FYHPQMNADMLSRMQLEHAMRQALDRGDFAVHYQPQVEMASGRVVGAEALLRWNDPGLGA 476 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S F+ +AEE I + ++LE+ R+ W P+ + +N+++ + + Sbjct: 477 VSPGVFIPLAEESGYIVTLGAWVLEQAIREAAEWMRAG--TPLVVAVNVSALEFRQSGFV 534 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + AL+ S ++L +E++++ + + L L ++G+ L++DDFGT S L+ Sbjct: 535 ERLVALLRSHGLPASLLELELTETILLQDAQEMAQRLAALAELGVGLSIDDFGTGYSSLA 594 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL + +K + S + G E AI+ +I+ + + + ++A+ + + L Sbjct: 595 YLKKLRIHKLKIDQSFVRGLPDDESDRAIIEAIVHIGRALRIRVVAEGVETPQQREALQA 654 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 + C Y Q VA L + L+ Sbjct: 655 LQCHYFQGFLVAPGLPAEAFRALVAR 680 >gi|228988980|ref|ZP_04149011.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770742|gb|EEM19276.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 782 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 159/784 (20%), Positives = 319/784 (40%), Gaps = 40/784 (5%) Query: 192 RGIIIGVASLLAIFLT------IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245 I++ L +L I ++ L + ++ + + G Sbjct: 16 LYIVVTAIFTLEWYLFNNPSANILFLSIGDIFLS----FIFPIIDLLLLLLGVSLIFRPA 71 Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP- 304 + ++ +L+ Y + ++ + + ++ P Sbjct: 72 IFNAKSKLFIFILVLTGLAITDYLYFYFQ-DVLSNRLVILLRCLYRVFLLFIAIAAAIPK 130 Query: 305 ---------MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 ++ + + L +I +K + LI + F++ + Sbjct: 131 NSSSKRNYFIINPTFGKKLLVIFPYLAVVVLIGFTLKEQTSSSTLIMGNCIAFVFVLIRH 190 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 + + + L L++ + TV Q + S + + ER Sbjct: 191 TIVRMQNKD------LTETLIVFNNQLEQTVSQRTMDLINKSNDLVKNQERFKSLYQYHP 244 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 + + D + + +LG S ++ G L D+ + G R Sbjct: 245 EPILTIDSNGKVLNINQAGSMLLGKDSAALIGKEC--LSIFLDEDKSELEVAIKK--GRR 300 Query: 476 RGRLQYEFRVR-AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + RV+ + + + I P+ G + DIT K+ + I AF Sbjct: 301 CSSSSLQLRVKNHNEKDIFFWYVTIVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAF 359 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D +T I NR F L + + + + ++ ID++++K IND LG ++GD VL Sbjct: 360 HDTVTEIGNRIFFQQELNRSIKHAQKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKE 418 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + R L LAR+ G+ F II+ ++ ++ D + + P + + + Sbjct: 419 VANRFRTCLSPTIPLARIGGDEFAIIVHNQT-EQQLLDLCETLFRITEEPFIVNQHSFYL 477 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712 + SIG A + I ++ +L++A++AMY AK +G N V + S + R+ +++DL Sbjct: 478 SLSIGIAVYPFGGINTTTLLQHADIAMYSAKKKGNNTVCMYDETLSQKITRRLRLEQDLP 537 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+EN+EL+L+Y P + +++G EALI+W HP+ G IS EF+ IAEE I +I Sbjct: 538 HAIENNELFLLYQPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGK 597 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 + L++ R + W + + IN+++ + + + + + I + + I L Sbjct: 598 WTLQKACRQLKEWHS-LGFSNLKMGINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLEL 656 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +E + M + + + L L+ G+ L++DDFGT S L+YL P D +K + Sbjct: 657 TERIAMVDEKETLSKLKALKSCGVHLSIDDFGTGYSSLAYLPLYPIDNLKIPREFVNRIG 716 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + I+++II +A + +IA+ + + + L R C IQ + + P+ ++ + Sbjct: 717 TSTDGDEIIQTIISLAHTLNMKVIAEGVETKGQLTVLQRNSCYLIQGYYYSRPINKDNFI 776 Query: 951 KLLK 954 + L Sbjct: 777 QFLS 780 >gi|134293314|ref|YP_001117050.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia vietnamiensis G4] gi|134136471|gb|ABO57585.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia vietnamiensis G4] Length = 749 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 131/572 (22%), Positives = 245/572 (42%), Gaps = 21/572 (3%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-- 453 ++ + E L V + + P ++ + + + + Sbjct: 182 IARQLVRSEEHHRLVVNSLNEGILVVSRDGVVTACNPSAHRMMRVKGDLVGRRLSTVILY 241 Query: 454 ------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-N 506 I +D + R ++ +L Y AD W+ P+ Sbjct: 242 KVHEDGTSIAPDDWPSRRALV-----TGASQLDYAAGFGLADGDIIWVRGNAVPIVKPGA 296 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLR 565 + +DI +++ + + A +D LTG+ NR+ +R+ + R Sbjct: 297 TQPESVLLSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGKRDPVAGPAR 356 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ ID+D +KK+ND G GD +L S+ R+ L R+ G+ F I++ + Sbjct: 357 VAVLFIDLDGFKKVNDTAGHDAGDALLRSVAARLVVCGSGRHALTRVGGDEFVILVEDCD 416 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + +A A + +IA P + E + SIG + ++ +++NA+ AMY AK Sbjct: 417 DPDALAALAREVIDAIAKPFEIANNEYWLGVSIGISVAPRDGDDAATLMRNADSAMYDAK 476 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 RG NH F + I++ L A+ + L L Y P++ VG EAL++ Sbjct: 477 QRGRNHFTFFTAQLNLRLQRRFAIEQSLRRAISSDALRLAYQPVVDARSGRTVGAEALLR 536 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W P+ G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ + Sbjct: 537 WTSPELGPLSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDMMLSVNLSPR 595 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L E + ++ T P ++L +E V+M + E +L L + + +++DDF Sbjct: 596 QF-HEGLVESVYRCLALTKLDPRALQLEITEGVLMNDTETVLPMLEALADLNVRISVDDF 654 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + + Sbjct: 655 GTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVETQ 714 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L ++GCD Q PL + L Sbjct: 715 AQSRFLQQIGCDMQQGYLFDRPLEAADYARRL 746 >gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium modesticaldum Ice1] gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium modesticaldum Ice1] Length = 853 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 143/557 (25%), Positives = 261/557 (46%), Gaps = 15/557 (2%) Query: 404 GERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN 459 ER LA + + + + D + P G + G R H Sbjct: 260 EERLLLAAKVIETTTEGIMITDAGGVIESVNPAFCRSTGYSESEAIGNSPRILKSGRH-- 317 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D + +R + + + G+ Q E R + + + I + +S+G +Y I +DI Sbjct: 318 DGEFYRKMWKALLE--TGQWQGEIWNRRKSGELYAAWLTISAIKDSHGRTTQYAAIFSDI 375 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE K++ E I A+ D LT +PNR F+DRLT + + + V+ +D+D++K+I Sbjct: 376 TEDKRNQERIKHQAYHDALTDLPNRLLFIDRLTQAIAQATRN-CYMLAVLFLDLDRFKQI 434 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G A+GD +L + R+ ++ D +ARL G+ F I+L + A A + Sbjct: 435 NDTYGHALGDLLLQGVAGRLRRAVRDSDTVARLGGDEFTILLPQIGSVEDAAKVAQKILA 494 Query: 640 SIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 S+ P + +T SIG A + + ++ NA+ AMY AK +G NH + + Sbjct: 495 SLRQPWSFEGIPSFCITTSIGIAVCPTDGEEAETLMHNADAAMYRAKAQGRNHYQLYTPE 554 Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ L A++ E L Y P + +EALI+W HP G +S +E Sbjct: 555 LNAWAFERLAMETRLRRALDQGEFVLYYQPKVEAATGNWCAVEALIRWQHPDLGLVSPTE 614 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I I + LE +W+D PP+ + +N++++ L ++ Sbjct: 615 FLRLAEDTGLIVPIGEWCLEEACVRNKAWQDAGL-PPVRMAVNLSARQFQHPNLLAAVEK 673 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + K+ P+ ++L SE V++ + + ++LG L+ +G+SLT+D +G + S ++ L + Sbjct: 674 ALQKSGLPPAWLELEISEEVILRFADLAPIVLGDLKSLGLSLTMDQYGKRDSRITLLQKL 733 Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D VK S + + ++++I +A++++ + A + LT GCD Sbjct: 734 PIDRVKIAASQVIDLSACHDARKSVKALIALARSLDLHVAADGVGTREQCDFLTAAGCDE 793 Query: 935 IQDSHVASPLGFNSILK 951 IQ + PL + + Sbjct: 794 IQGHLFSDPLSAEEMGR 810 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 10/154 (6%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ +L + + + + + S G+ + D P+ +LG + + Sbjct: 118 RVRRLLQAQHTEKALKARETQLSAVASALGEGLIVLDAEGRLTFMNPEAERLLGWSLPEL 177 Query: 446 HGPIRNWLPYIH---INDRDNFRT---ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 G + IH +L + R E+ D + + Sbjct: 178 LGKKIH--SIIHNRRPEGDPIAEADCLVLKTIGAGETYRSDEEY-FTRKDGALFPVSLVS 234 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 P+ N I + +DI+++KK E +L A Sbjct: 235 TPLR-VNDRITGAVTAFHDISDRKKVEERLLLAA 267 >gi|221212626|ref|ZP_03585603.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Burkholderia multivorans CGD1] gi|221167725|gb|EEE00195.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Burkholderia multivorans CGD1] Length = 749 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 142/640 (22%), Positives = 271/640 (42%), Gaps = 26/640 (4%) Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 ++ + A L W + F G+ + +P+ +L+ I + Sbjct: 116 LWDAYRSIALAFGLRACWSVPFEDDTGVVLGAFAVYYRAPRRPSHEETALLLDISNSVGL 175 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 H +Q + E L V + + + + P +L A G + Sbjct: 176 AVHQDR---IAQQLARSEEHHRLVVNSLNEGILVVSRDGVVIASNPSANRML-RAKGELV 231 Query: 447 GPIRNWLPY---------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + + I + + R ++ L Y AD W+ Sbjct: 232 GRRMSTVILRKLSEDGTPIAPDRWPSRRALISGA-----PVLDYTVGFGLADGDVIWVRG 286 Query: 498 RIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 P+ + + +DI +++ + + A +D LTG+ NR+ DR+ + Sbjct: 287 NAVPIVKPGDTQAASVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFG 346 Query: 557 -LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 R ++ +D+ +KK+ND G GD +L S+ R+ ++ L R+ G+ Sbjct: 347 GRDPAGGPARVAILFLDLVGFKKVNDTAGHDAGDALLRSVAARLAACMRGRHALTRVGGD 406 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I++ ++ +A A + +IA P + E + SIG + ++ +++ Sbjct: 407 EFVILVDDCDDPEALAALAREVIDAIAKPFAIANNEYWLGVSIGISIAPRDGDDAATLMR 466 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+ AMY AK RG NH F + I++ L A+ ++ L L Y P++ Sbjct: 467 NADSAMYDAKQRGRNHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARTG 526 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 VG EAL++W P+ G +S +EF+ +AE+ +I AI ++LE R WR P Sbjct: 527 RTVGAEALLRWTSPELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPD 585 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N++ + D L E + +++T P ++L +E V+M + +L L + Sbjct: 586 LMLAVNLSPRQFHD-GLVESVSRCLAQTRLDPGALELEITEGVLMNDTATVLPMLEALTE 644 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 + + +++DDFGT S L+YL P +K + S ++G +AI ++++ MA ++ Sbjct: 645 MNVRISVDDFGTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGM 704 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + A+ + E L ++GCD Q + PL + Sbjct: 705 KVTAEGVETEAQSWFLQQIGCDMQQGYLFSRPLDPVDYAR 744 >gi|284988703|ref|YP_003407257.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus DSM 43160] gi|284061948|gb|ADB72886.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Geodermatophilus obscurus DSM 43160] Length = 898 Score = 491 bits (1265), Expect = e-136, Method: Composition-based stats. Identities = 128/455 (28%), Positives = 227/455 (49%), Gaps = 10/455 (2%) Query: 508 DILRYIGI-ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 +++ IG + E++ + + +A D LTG+PNR LDRL L + Sbjct: 426 EVMGQIGTQLGRVVERELAQGRLTHHALHDPLTGLPNRVLLLDRLEVALAQRSRGG---V 482 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V +D+D +K IND LG A GD V+ + R+ +++ D +AR G+ F ++ S + Sbjct: 483 AVAFVDLDHFKLINDSLGHAAGDTVITAAATRLRAVVRPGDTVARFGGDEFVVLAESVVD 542 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + A + ++A P +L E+ VTASIG A + + + +L++A+ AMY AK Sbjct: 543 ERDVEGLAERLAGALAEPFDLAGDEVFVTASIGIAVSSGTGGDAHGLLRDADAAMYRAKE 602 Query: 687 RGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G E F ++ DL A+E ++ L + P I L ++G+EAL++W Sbjct: 603 AGRARHEVFDSVMRAGAIRRLEIVNDLHRALERNQFVLHFQPQIDLRTNSLIGVEALLRW 662 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASK 803 HP+ G I EF+ +AEE +I + ++L + +W D+ P+ + +N++ + Sbjct: 663 VHPERGLIPPLEFIPVAEETGLINDLGRWVLRAACQQGRTWLDRFPDREPLVMSVNLSGR 722 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L L E + A + + + ++ L +ESV+M + + L L+++G+ L +DDF Sbjct: 723 QLHQPRLAEEVAAALEDSGFPADQLVLEITESVLMNDTAATIHTLEALKELGVRLAIDDF 782 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYG 920 GT S L+YL P D +K + S + G A+ R+I+ +AK + +A+ + Sbjct: 783 GTGYSSLTYLQRFPIDILKIDKSFVDGLGSANIEESAVTRTIVALAKTLRLETVAEGVER 842 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++EL + CD Q A PL ++ L+ + Sbjct: 843 SEHVRELQSLHCDIGQGYFFARPLDAGALTTLMAQ 877 Score = 62.3 bits (150), Expect = 5e-07, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 72/244 (29%), Gaps = 26/244 (10%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 +T + + + + + Q V + + + Sbjct: 98 TATLTAVGHSSLTVDYVSSLVTHEDEPVAVFWFQDVAPRNQTESALHQLEMKYRAVTESA 157 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVG 473 D + D V+ + G A+ + G L + RD + F+ Sbjct: 158 SDAIVSADARGLIVSWNRGGEAMFGYAAEDVIGKP---LTILMPERYRDAHERGMGRFLL 214 Query: 474 YRRGRL----QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 R+ E + AD + + + + G+ + GI DITE+K++ + Sbjct: 215 TGEPRVIGSGAVEVHAQRADGTEFPVELSLS--HWAEGEGRFFTGILRDITERKRAEAAL 272 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 TG F+ L + S + R + + I + G VG Sbjct: 273 ARE------TG------FIRLLQRVSVASNETSSGREALE----TGLRMIAEHTGWPVGH 316 Query: 590 DVLV 593 LV Sbjct: 317 IYLV 320 >gi|326315437|ref|YP_004233109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372273|gb|ADX44542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 657 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 140/609 (22%), Positives = 263/609 (43%), Gaps = 19/609 (3%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG----YFSQGIFSDGERQSL 409 + A +++ AL VL G ++ A G ++G ERQ L Sbjct: 36 VAGAEALLPAGSVLRAALQAAFVLAPAGCGVWALRRWRARGREIAALARGALQADERQRL 95 Query: 410 A---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465 A V + + + D ++ ++G + G R + H R + Sbjct: 96 AATVVDNAAEGMVVTDAESRILSVNAAFTRLMGYGEAELLGRTPRLFKSGRH--GRAFYE 153 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + R G Q E R + + + + + N+ G++ Y+ + DI+++ + Sbjct: 154 AMWEEL--GRTGHWQGEIWNRRKNGEVFPERMSLSSVRNARGEVTHYVCLFTDISQEHEQ 211 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + A D LTG+PNR F +L + + V+++++D++K +ND G Sbjct: 212 RRRLEVMAHTDPLTGLPNRTFFAQQLEEAMADARARGEP-LAVLLVNLDRFKDVNDSYGH 270 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 AVGD VL + R+ + L+ D+ RL+G+ G+I + A A+ ++A P Sbjct: 271 AVGDQVLRHIAARVQDALRPGDLAGRLAGDEIGVIARRVEGAPGAVAAARALLAALAEPW 330 Query: 646 -NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRS 702 + E+ +AS+G + T+ +L+ A A+Y A+ G F S Sbjct: 331 RSPDGFEVVASASVGICLFPDHGDTADALLQGAHAAVYGAREHGQGAWHFFDESLTQAAR 390 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 +R+ ++ L A+ L L Y P + + IVG EAL++W P G I+ F+ +AE Sbjct: 391 ERLALEARLRSALAQGHLQLHYQPQVDIASGRIVGAEALVRWIDPVEGTIAPDRFIPVAE 450 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 MI + ++++ R WR+ P + + +N++ + +L ++ + Sbjct: 451 RTGMIGPLGEWVMQEACRQAQGWREAGL-PGVTMAVNVSPRQFHLTDLAGCAALALADSG 509 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + ++L +E + PE +R +L RLR +G+ L +DDFGT S L++L P D +K Sbjct: 510 LPSTLLELELTEGALAERPEEARQVLLRLRGLGLRLAIDDFGTGYSSLAHLKRFPIDVLK 569 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + +AI +II M ++ ++A+ + + L GCD Q Sbjct: 570 IDKGFIRDLPQSADDMAICAAIIAMGHSLGLAVLAEGVETPEQLAFLRSRGCDRYQGYLC 629 Query: 941 ASPLGFNSI 949 P+ Sbjct: 630 RRPVPAAEF 638 >gi|326941229|gb|AEA17125.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 909 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 165/755 (21%), Positives = 307/755 (40%), Gaps = 20/755 (2%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I + L F + ++L + + F + N S + ++ Sbjct: 162 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 217 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327 +L+ YL + + + + ++ P T+S + + +I Sbjct: 218 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPKNTSSKRNYFIVNPTFGEKLLVI 276 Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 Y + L I I + + + L L + + Sbjct: 277 FPYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKDLTEALKVFNNQLE 336 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 TVIQ S + + ER D + D + + +LG S Sbjct: 337 RTVIQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESA 396 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ G D+ + + LQ + + W + I P+ Sbjct: 397 ALIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 453 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G + DIT K+ + I AF D +T I NR F L + + + Sbjct: 454 -IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTQD 512 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F II+ + Sbjct: 513 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFAIIVHN 571 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++ D + + P + + ++ SIG A + I ++ +L++A++AMY Sbjct: 572 QT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 630 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I +++G EAL Sbjct: 631 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEAL 690 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP+ G IS EF+ IAEE I +I + L++ R + W + + IN++ Sbjct: 691 IRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWYSA-GYSNLKMGINLS 749 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + + + M + I + + I L +E + M + + + L L+ G+ L++D Sbjct: 750 AIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKVLKSYGVHLSID 809 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P DT+K + I+++II +A + +IA+ + Sbjct: 810 DFGTGYSSLAYLPLYPIDTLKIPKEFVNRIGTFTDGDEIIQTIISLAHTLNMKVIAEGVE 869 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + + L R C IQ + + P+ + + L Sbjct: 870 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFLS 904 >gi|91793928|ref|YP_563579.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91715930|gb|ABE55856.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella denitrificans OS217] Length = 1047 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 144/562 (25%), Positives = 246/562 (43%), Gaps = 16/562 (2%) Query: 400 IFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + E S+A S + + +D V T P + I G + + G L Sbjct: 474 LKRAEESLSIAASVYRNSSEAMCVFDYQGKIVNTNPAFSEITGFDADEVIGQHLAVLQK- 532 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 ++F L+ ++ +R Q E + + Q + + I + + + + Sbjct: 533 -EEQAEHFNLQLEQYLFEKR-YWQGELSFQRKNGQTYTAWVTINAIGELDTCDTLNVMLF 590 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D++E+K++ E I A D LTG+PNR+ L+ + + D+ ++ +D+D + Sbjct: 591 ADVSEKKQAEELIWLQANYDTLTGLPNRRMLLEYIKLQIANCTRDNQG-FALLFLDLDFF 649 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND LG +GD +LV ++RI ++ D++AR+ G+ F I+L + Sbjct: 650 KEVNDSLGHDMGDSLLVEASQRIKACIRDADLVARIGGDEFTIVLTDFTGPKGVERVTNK 709 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + K ++ P L ++ SIG + +T +LKNA+ AMY AK G N F Sbjct: 710 ILKQLSEPFMLGSEMAYISGSIGITLYPDDALTIDGLLKNADQAMYSAKAHGRNKFNYFT 769 Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM---DEEIVGLEALIQWDHPKWGN 751 + + +DL A++ E L Y PII + I EALI+W HPK G Sbjct: 770 PKMQETALRRMKLIQDLKTAIKMEEFELYYQPIIDFSANASDNITKAEALIRWHHPKLGF 829 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-EL 810 IS +F+ IAE+ MI I ++ + R W+ I I IN + D Sbjct: 830 ISPVDFIPIAEDTGMIVEIGNWVFRQACRQAAQWKQTYG-LDIQISINKSPVQFRDERSS 888 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 +S+ SP+ I + +E +++ L R G+ ++LDDFGT S L Sbjct: 889 VTSWTQYMSELNLSPASICVEITEGLLLETESGVGAKLAAFRDAGMQISLDDFGTGYSSL 948 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL D +K + S ++ +++ +II M+ + +IA+ I E+ L Sbjct: 949 SYLKKFDIDYLKIDKSFVSNLEDNTNDLSLCEAIIVMSHKLGIKVIAEGIETELQRAMLE 1008 Query: 929 RMGCDYIQDSHVASPLGFNSIL 950 GCDY Q + P+ Sbjct: 1009 CAGCDYGQGYLFSKPVKAEDFE 1030 Score = 107 bits (267), Expect = 1e-20, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 1/156 (0%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ + + + E+ +L + S +WDW I + V + A I+ Sbjct: 330 GSMLVIAGFLDITKLKQAEAALQNSKEQLALVLDSSDLGIWDWHINTNEVASNLRSAQII 389 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G ++ W I DR L + + + E+R+R+ + W++ Sbjct: 390 GCELALLNQKPSLWFKAIIAEDRKRLIKSLLAIRKGQSIHHKIEYRIRSLNGDIRWILDT 449 Query: 499 IRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNA 533 + + ++ G LR G DIT+ K++ E + A Sbjct: 450 GKVVEVADTGQPLRMCGTHTDITDLKRAEESLSIAA 485 Score = 85.4 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 33/344 (9%), Positives = 86/344 (25%), Gaps = 27/344 (7%) Query: 208 IFYMVNRSSMLIPTFAMAWVVL-------------GYISIDFGFLSKLVNLPSGELLIWR 254 + ++ A ++ I + F L+ + Sbjct: 9 FLFFFLGQVAIVMMLAYFLCLIPRNDQQKHAPSYQIVIGVLAAFGVMLLIEHGIMYGLGL 68 Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIA---ILFCMSFYYPMVTASIA 311 +E + + A I +L P V Sbjct: 69 PSNESVFQDLNQTYSSDSELTGLFFASSALIASLVGLYFGRYVLLVAALVLSPYVIYLTD 128 Query: 312 RITLASIVLYYTYFIIYHGMKGY--------ERAVLLIPAWILIFIWFIGLWMAITKRLD 363 ++ I+ ++ + Y + A L + ++ ++ + Sbjct: 129 FPIISLILALGLSGVLGALFRRYTVEHLGTIKLAKLYLFGLVVQIVFLSTSMLTADNWRH 188 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 + + +++L ++ + Q + + Sbjct: 189 VIHLNSLYLLVFFPLIMLAAANLMSKYIFFERNMQIRLQEDFLFKNQFDIGNIGIAITSK 248 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 + + P I +L + + W H D + + + + + + Sbjct: 249 AKYWLKVNPCICKMLKYSEKEL--TRMTWKELTHPEDLEKDLSYFNRMLKGEISEYEIDK 306 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 R A D + + + NG +L G DIT+ K++ Sbjct: 307 RFIAKDGAIVYTHLTVACRFYDNGSMLVIAG-FLDITKLKQAEA 349 >gi|120609349|ref|YP_969027.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120587813|gb|ABM31253.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax citrulli AAC00-1] Length = 657 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 141/609 (23%), Positives = 265/609 (43%), Gaps = 19/609 (3%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY----FSQGIFSDGERQSL 409 + A +++ AL VL G ++ A G ++G ERQ L Sbjct: 36 VAGAEALLPAGSVLRGALQAAFVLAPAGCGVWALRRWRARGREIAVLARGALQADERQRL 95 Query: 410 A---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465 A V + + + D ++ ++G + G R + H R + Sbjct: 96 AATVVDNAAEGMVVTDAESRILSVNAAFTRLMGYGEAELLGRTPRLFKSGRH--GRAFYE 153 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + R G Q E R + + + + + N+ G++ Y+ + DI+++ + Sbjct: 154 AMWEEL--GRTGHWQGEIWNRRKNGEVFPERMSLSSVRNARGEVTHYVCLFTDISQEHEQ 211 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + A D LTG+PNR F +L + + V+++++D++K +ND G Sbjct: 212 RRRLEVMAHTDPLTGLPNRTFFAQQLEEAMADARARGEP-LAVLLVNLDRFKDVNDSYGH 270 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 AVGD VL + R+ E L+ D+ RL+G+ G+I + + A A+ ++A P Sbjct: 271 AVGDQVLRHIAARVQEALRPGDLAGRLAGDEIGVIARRVDGAQGAVAAARALLGALAEPW 330 Query: 646 -NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRS 702 + E+ +AS+G + T+ +L+ A A+Y A+ G F S Sbjct: 331 RSPDGFEVVASASVGICLFPDHGDTADALLQGAHAAVYGAREHGQGAWHFFDESLTQAAR 390 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 +R+ ++ L A+ L L Y P + + IVG EAL++W P G+I+ F+ +AE Sbjct: 391 ERLALEARLRSALAQGHLQLHYQPQVDIASGRIVGAEALVRWIDPVEGSIAPDRFIPVAE 450 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 MI + ++++ R WR+ P + + +N++ + +L ++ + Sbjct: 451 RTGMIGPLGEWVMQEACRQAQGWREAGL-PEVTVAVNVSPRQFHLTDLAGCAALALADSG 509 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + ++L +E + PE +R +L RLR +G+ L +DDFGT S L++L P D +K Sbjct: 510 LPSTLLELELTEGALAERPEEARQVLLRLRGLGLRLAIDDFGTGYSSLAHLKRFPIDVLK 569 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + +AI +II M ++ ++A+ + + L GCD Q Sbjct: 570 IDKGFIRDLPQSADDMAICAAIIAMGHSLGLAVLAEGVETPEQLAFLRSRGCDRYQGYLC 629 Query: 941 ASPLGFNSI 949 P+ Sbjct: 630 RRPVPSAEF 638 >gi|170735854|ref|YP_001777114.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia cenocepacia MC0-3] gi|169818042|gb|ACA92624.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia cenocepacia MC0-3] Length = 749 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 130/568 (22%), Positives = 249/568 (43%), Gaps = 11/568 (1%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 ++ + E L V + + + + P ++ + + + + Sbjct: 181 RIARQLARSEEHHRLVVNSLSEGILVISREGIVIASNPSANRMMRVKGELVGRRLSTVIL 240 Query: 455 YIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDIL 510 D D + L Y AD W+ P+ Sbjct: 241 RKLREDGTPIDPHDWPSRRALETATPMLDYTVGFGLADGDIIWVRGNAVPIVRPGETQAD 300 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI-LDLSATDDNLRPTVM 569 + NDI +++ + + A +D LTG+ NR+ DR+ + A R ++ Sbjct: 301 SVLVSFNDIGPVREAQQQLRYMATRDALTGLYNRRWLGDRMRELFCVRDAAAGPARVAIL 360 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ID+ +KK+ND G GD +L S+ R+ + L R+ G+ F I++ ++ + Sbjct: 361 FIDLVGFKKVNDTAGHDAGDALLRSVAARLAACGEGRYALTRVGGDEFVILVDDCDDPDR 420 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 ++ A + ++IA P + E + SIG + ++ +++NA+ AMY AK RG Sbjct: 421 LSVLAREVIEAIAKPFAIANNEYWLGVSIGISVAPRDGDDAATLMRNADSAMYDAKQRGR 480 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 NH F + I++ L A+ + L L Y P++ VG EAL++W P Sbjct: 481 NHFTFFTAQLNLRLQRRFAIEQSLRRALASDLLRLAYQPVVDARSGRTVGAEALLRWTSP 540 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G +S +EF+ +AE+ +I AI ++LE R + WR P + + +N++ + Sbjct: 541 ELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQVAEWRR-TIAPDLMLAVNLSPRQF-H 598 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L E + +++T PS ++L +E V+M + + +L L + + +++DDFGT Sbjct: 599 EGLVESVGRCLAQTRLDPSALELEITEGVLMNDTDTVLPMLEALTDMNVRISVDDFGTGY 658 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + + Sbjct: 659 SSLAYLKRFPLHNLKVDRSFVSGVPDHHDSVAITQAVVAMAHSLGMKVTAEGVETQAQSW 718 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 L ++GCD Q + PL + + L Sbjct: 719 FLQQIGCDMQQGYLFSRPLDASDYARRL 746 >gi|94499806|ref|ZP_01306342.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanobacter sp. RED65] gi|94428007|gb|EAT12981.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanobacter sp. RED65] Length = 1215 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 126/604 (20%), Positives = 257/604 (42%), Gaps = 16/604 (2%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 R+D + +++ + + + + + + Sbjct: 596 QGRIDGTFAIYHDHIKAPTDNDIAIIEKASKLVSITMEKHDADNRLMQAANVFEHASEGI 655 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRR 476 DI + + I G + + G L ++ + L++ Sbjct: 656 LITDIDGEIIDVNKAFTQITGYSKEDVVGKNPRILSSGKYEQETYEDIFSTLENI----- 710 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 G+ + E + ++ I + + +G YI + NDIT K E + A D Sbjct: 711 GQWKGEIWNKDKKGNLFAVLESISTVYDDSGKPRNYIALFNDITNIKSHQEQLENLANYD 770 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +LT +PNR DR+ + L+ + +L V+ ID+D +K +ND G VGD +L++ + Sbjct: 771 SLTQLPNRTLLTDRMQQAMALAKREGHL-LVVIFIDLDGFKPVNDRYGHDVGDRLLIAFS 829 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 +R+ LL+ D L RL+G+ F +L + + ++ P + E ++ ++A Sbjct: 830 KRVSLLLRSTDTLGRLAGDEFVTLLPNVQQFENCEPLLERILSAVEKPFIIDEHQLKISA 889 Query: 657 SIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCL 713 S+G + ++ + ++L+ ++ AMY AK G N F + + R + + Sbjct: 890 SMGVTVYPQAEDLDADQLLRQSDQAMYLAKQDGKNRYHLFDATQHQLMRDHHENLVRIQE 949 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A++N E L Y P + L E++G+EALI+W H G + F+ + + + + Sbjct: 950 AIKNKEFILHYQPKVNLRSGEVIGVEALIRWQHRDKGLLPPGSFLPLLDNHPAMIQFGKW 1009 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSF 832 ++ I W+ Q + + INI L + +++ + +PS ++L Sbjct: 1010 VMHEALNQISVWQKQ--NLNLNVSINIDPMHLQSPDFISDLESALHNFPDVNPSFLELEI 1067 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 E+ + + + R +G+ +LDDFGT S L+YL +P +K + S + Sbjct: 1068 VETAAIEDINVVSDTINRCHDLGVHFSLDDFGTGYSSLTYLKRLPIHVLKIDQSFVRDIL 1127 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 +AI++ ++ +AK+ T IA+ + + + L ++GC+ Q ++ P+ +I Sbjct: 1128 SDPDDLAIVQGVLGLAKSFNRTAIAEGVETQKHGELLLQLGCELAQGYGISRPIEAKAIP 1187 Query: 951 KLLK 954 +K Sbjct: 1188 DWIK 1191 Score = 56.9 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 58/188 (30%), Gaps = 5/188 (2%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + + KR+ +I + + IL+ + + + + + R Sbjct: 297 LSISVGELPSRKRILFEISSEPFIAYVRAKSILMFAFLTILTVVAIFLTYYLTRPLRRIM 356 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTI 467 + D V D+ + + I G M G L + Sbjct: 357 QVASEATDGVIITDVKGNIEWINRALTKITGYTLAEMKGLKPGKLLQG--PDTDPEVVQR 414 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + ++ + H++ I P+ + NG++ ++ + D+T Q + E Sbjct: 415 ISEGLRNKQ-HFKEVILNYTKSGDPHYVEIICNPLRSDNGNLSGFMALQRDVTHQIQL-E 472 Query: 528 GILCNAFQ 535 + + Sbjct: 473 KLEAFSSH 480 >gi|16124346|ref|NP_418910.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] gi|221233028|ref|YP_002515464.1| MHYT/PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000] gi|48474944|sp|Q9ABX9|Y091_CAUCR RecName: Full=Uncharacterized signaling protein CC_0091 gi|13421194|gb|AAK22078.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15] gi|220962200|gb|ACL93556.1| MHYT/PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000] Length = 809 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 151/762 (19%), Positives = 303/762 (39%), Gaps = 43/762 (5%) Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273 R + + +V G F++ + P + + ++L + + + Sbjct: 49 RGVVRAAWLLLTGLVAGSSVWATHFIAMVAFTPGLKTGYSPTGTLLSLMIAALFMASGFA 108 Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSF------------YYPMVTASIARITLASIVLY 321 + + + + + + A + + Sbjct: 109 VASAQRSTTNDFAGGVLIGLGVAAMHYMGMSAFVTQGQLVWEHATVGMSAVLGVGGATAA 168 Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV--LIV 379 ++ ++ I++ + + I + L GG++ + Sbjct: 169 LLLAGTARTIRRQAVGGGMLCLGIVMLHFTGMSAITIVPDASLTVPDQLLSGGMLTLAVG 228 Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATIL 438 + ++ + A SQ S ER + + + + R+ ++ Sbjct: 229 SITSMIILGGLGAVAIESQTSRSALERIRRLANAAYEGLVV--VQSGRINDANAAFCDLV 286 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR-AADNQFHWMII 497 G + G + + D R ++ E R+R + + + Sbjct: 287 GAPLAELVGRPL-FGEIL----------TFDEA-DPSREDVRREGRLRPLVGGREIPVEV 334 Query: 498 RIRPMSNSNGDILR--YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 R M + + D+ E++ + E I A D LTG+ NR S RL + Sbjct: 335 FSRLMDDGARVETSGLTVLAVRDLRERRAAEEKIRYLAEHDGLTGLLNRNSLQMRLAAAI 394 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D V+ ID+D +K+ ND G GD +LV RR+ ++ P ARL G+ Sbjct: 395 DRVEASGE-SLAVICIDLDHFKEANDQHGHLAGDALLVETARRLQSAVQAPSFAARLGGD 453 Query: 616 RFGII-LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 F ++ + + A+ A + + +A P+ +E+ + +S+G + + T+ ++ Sbjct: 454 EFIVVQIAGGDQPAVAAELAGRLIEMLAAPVPFDGQELAMGSSLGVSLYPDDGRTAEALM 513 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 NA++A+Y AK G F+ +R + DL + ++EL + Y P+ R D Sbjct: 514 ANADMALYRAKESGRGVYRFFKREMDDTIRERRNLARDLRQGIADNELIVHYQPLARAAD 573 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 E+ G EAL++W HP G I +F+ +AEE +I+A+ ++L R D +W Sbjct: 574 GEVCGFEALVRWKHPTRGMIPPLDFIPVAEENGLIEALGDWVLRRACADAAAWEK----- 628 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 P+ I +N++ L + L + ++ T SPSR++L +ES + + +R+ L RL+ Sbjct: 629 PLRIAVNLSPIQLHNPALPTLVHEVLITTGLSPSRLELEITESALFKDYQRALDNLRRLK 688 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910 +G+ + +DDFGT S LS L PFD +K + S + AI+R+++ + +++E Sbjct: 689 ALGVRIAMDDFGTGFSSLSTLQSFPFDKIKIDKSFVENIHRHDRATAIVRAVLGLGRSLE 748 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++A+ + E I L C +Q + P +++ Sbjct: 749 IPVVAEGVETEEQILFLRGEDCAELQGYAIGRPAPVDALTMW 790 >gi|330943152|gb|EGH45569.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 675 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 150/580 (25%), Positives = 265/580 (45%), Gaps = 31/580 (5%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 114 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 170 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 171 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 230 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID + Sbjct: 231 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 287 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F +++ + + A Sbjct: 288 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQ 346 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 347 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 406 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 407 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 466 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 467 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 525 Query: 815 QALISKTLYSPSRIKLSFSESVVMGN---------PERSRLLLGRLRKIGISLTLDDFGT 865 A++ + P S++ E +R L L+K+G+SL +DDFGT Sbjct: 526 AAILKEEELDP---------SLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGT 576 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S SYL P D +K + S + E + I ++I MA N++ ++A+ I Sbjct: 577 GYSSFSYLKKFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQ 636 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 + L R CD Q P+ ++K LK R+P + Sbjct: 637 LAFLRRHRCDVGQGYLFDRPIPGEELIKKLK-RYPRRPSA 675 >gi|300864704|ref|ZP_07109560.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300337310|emb|CBN54708.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 870 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 118/435 (27%), Positives = 228/435 (52%), Gaps = 6/435 (1%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 Q++ + A D LTG+ NR F +RL+ L + + V+ +D+D +K IND Sbjct: 425 QRRVEGMVRHQASHDQLTGLANRLLFNERLSLALANANQRGEM-LAVVFLDLDGFKHIND 483 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG AVGD +L + R+ L+ DI+AR G+ F + ++ + S+ Sbjct: 484 TLGHAVGDQLLQCVAHRLITSLRTGDIIARWGGDEFTFLFSHIKSAEDTTKICQLILHSL 543 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699 P L +RE+ + AS+G A + +LKNA+ AMY AK +G N+ + + + Sbjct: 544 NTPFQLEDRELYIKASLGIALAPYDGEDADTLLKNADAAMYRAKQQGRNNYQLYSPAIGS 603 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 +R++++ +L A+E+ E L Y P I L ++G+EAL++W HP+ G I +EF+ Sbjct: 604 KAFERLILENNLYRALEHKEFLLYYQPQIDLNTGMMMGVEALLRWHHPERGLIPPNEFIP 663 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I I +++ +W+ A +PPI + +N++++ L + + ++ Sbjct: 664 LAEETGLICPIGEWVMRTACAQNKAWQ-LAGLPPIRMAVNLSARQFQQTSLVKTIPQILE 722 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 ++ P +++ +ES+ + + + + +L +LR++GI +++DDFGT S LS L ++P D Sbjct: 723 ESGLKPEYLEIEITESIAVRDVQFTIAILCQLRQMGIHISMDDFGTGYSSLSSLKHLPLD 782 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + AI++ ++ + ++ +IA+ + ++ L + CD Q Sbjct: 783 NLKIDQSFIKELMSDRNDAAIIKVVLALGHGLKLRVIAEGVETWDQLQFLRGIKCDGAQG 842 Query: 938 SHVASPLGFNSILKL 952 + PL ++ ++ Sbjct: 843 YFFSRPLPAKALTQM 857 >gi|251789553|ref|YP_003004274.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Dickeya zeae Ech1591] gi|247538174|gb|ACT06795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Dickeya zeae Ech1591] Length = 722 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 137/585 (23%), Positives = 248/585 (42%), Gaps = 22/585 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ L + R S D + + +L + Sbjct: 152 AALVMDKLEMRRLDLARRASQARFESIAESSPDAILCVNDKGTITFWNESAEKMLEYSRD 211 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIR 500 + G + I + F L + E RA + + Sbjct: 212 QIIGEH---ISSIVPD---MFVVQLHHLATDKTAIFKGSSIELETRALPGTMIPTELTVS 265 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + RY I D TE+++ E + A +D LTG+ NR L +L Sbjct: 266 --MWHDHNQTRYGIILRDTTERQRYEERLFLQAHRDPLTGLANRTLLTSTLDQVLK---- 319 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + +M+ID+D +K IND LG A GD++L S++RR+ + ++ D++AR+ G+ F I+ Sbjct: 320 -NGEPAAIMIIDLDGFKDINDSLGHASGDEILSSVSRRLQDNVQSGDLVARMGGDEFAIL 378 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L +N+ ++A A + I+ + + ++I +ASIG + + T ++L +A+LA Sbjct: 379 LPKQNDKERVAKLAEKIIHDISQAVLVDNKQINTSASIGLVMYPTHGTTVQDLLTSADLA 438 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N F + L A E E + Y P + L++ +IVG Sbjct: 439 LYQAKADGRNCYRFFTRELREVFQARHAFQLEFIRAYEQEEFEVFYQPQVSLVNSKIVGA 498 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP G + + FM E + I ++++ + W I I Sbjct: 499 EALLRWRHPYKGLLGPAAFMSALERGPWAERIGDWVVQSACQQASEWCRAGAR-NFRISI 557 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+ + L + ++ ++ +T P ++L +E++++ + E L LR GIS+ Sbjct: 558 NLFAAQFRSGRLAQKIKDVLMQTGLKPGALELEITENIILRHDESMMKPLNELRSSGISI 617 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 DD+GT + LS L + P +K + + + E AI+R+I+ + K+ +IA+ Sbjct: 618 AFDDYGTGYASLSMLKHYPVTRLKIDQTFVRAMCESAPDAAIVRAILYLGKSFGLDVIAE 677 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK-ERFPLV 960 + + + L GC+ Q P+ KLL+ E PL Sbjct: 678 GVETQEQCERLLNKGCEQAQGYLFGRPMPAAEFEKLLELENAPLA 722 >gi|326316390|ref|YP_004234062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373226|gb|ADX45495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 689 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 122/585 (20%), Positives = 239/585 (40%), Gaps = 16/585 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + + + + + + D + D+ +A + Sbjct: 105 EGMPLLVLGMLDRSEQASIQGELERLLSELRATLDSAADGMLVCDMGGRVRAFNQRMAWL 164 Query: 438 LGLASGSMHGPIRNWLPYIHIN---DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 + + + + D D +R L + +R Sbjct: 165 WNMPEDLLVQRDDAAVEAHMADQVIDADAYRARLLGIAQFPEEETLDILHLRT--GTV-- 220 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + R P S G + + D+T Q + + I A+ D LTG+PNR + + Sbjct: 221 IERRSVPQM-SQGRPMGRVYSFRDLTLQHAAQKRIEQLAYSDVLTGLPNRLLLSRCVASA 279 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L+ + ++ ID+D++K IND LG GD VL + +R+ L+ D+L RL G Sbjct: 280 LETARAQGGG-FAILFIDLDRFKIINDSLGHLFGDRVLQLVAQRLQGCLRQSDMLCRLGG 338 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F + L + A + + + P L ++ SIG A T +++ Sbjct: 339 DEFVLHL-DAGDESMAESVAHRILEDMRQPFMLDGMGFSIQCSIGIALHPRDGETLDDLI 397 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732 K A+ AMY K RG ++ R+ ++ + A++ + + Y P + + Sbjct: 398 KQADTAMYRVKERGRGSYGFYQPQMNADMLSRMQLEHAMRQALDRGDFAVHYQPQVAMAS 457 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +VG EAL++W+ P G +S F+ +AEE I + ++LE+ R+ W Sbjct: 458 GRVVGAEALLRWNDPGLGAVSPGVFIPLAEESGYIVTLGAWVLEQAIREAARWMQAG--T 515 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 P+ + +N+++ + + E + +L+ S ++L +E++++ + + L L Sbjct: 516 PLVVAVNVSALEFRQSGFVERLVSLLRSHGLPASLLELELTETILLQDAQEMAQRLAALA 575 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 ++G+ L++DDFGT S L+YL + +K + S + G E AI+ +I+ + + + Sbjct: 576 ELGVGLSIDDFGTGYSSLAYLKKLHIHKLKIDQSFVRGLPDDESDRAIIEAIVHIGRALR 635 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++A+ + + L M C Y Q VA L L+ Sbjct: 636 IQVVAEGVETPQQREALQAMQCHYFQGFLVAPGLPAEDFRALVAR 680 >gi|299134901|ref|ZP_07028093.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Afipia sp. 1NLS2] gi|298590711|gb|EFI50914.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Afipia sp. 1NLS2] Length = 806 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 148/755 (19%), Positives = 292/755 (38%), Gaps = 47/755 (6%) Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII-FLFMYLHWNRWH 279 T + + + G L+ + + S +++ F+ W Sbjct: 53 TAGLVGGCGVWATHFIGMLAYTPGVSISFDFLMTVASLGVAIVMMVVGFITATYGDRTWA 112 Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIA--RITLASIVLYYTYFIIYHGMKGYERA 337 +G + ++ + ++ + ++ E Sbjct: 113 PLIGGGILGAAISLMHYLGIASLRMPADIVWMPDLLAVSIACGVGFGALSLSVVRRGETV 172 Query: 338 VLLIPAWILIFIWFIG---LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 L+ + + + M+ + +D+ + GL I + +G + Sbjct: 173 WFGAIGAGLLMVAILTDHFIAMSAMGLI-SDVTATSENVGLSPIALSVGVASVMAAFVVA 231 Query: 395 YFSQGIFSDGERQSL---------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 I R+ + A+ + + + +A + Sbjct: 232 CLISAISDRRSRRDINERNIQLNAAIDNMRQGLCMFGPDNCLQLWNEKYVGMYKIAPEDI 291 Query: 446 HG--PIRNWLPYIHIN-----DRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMII 497 + + D D++ + L + V R R E D + + Sbjct: 292 RVGMTVDDMFAARKKAGTIVKDLDSYSSHLWNSVENREFTRWILEL----VDGRTISVSY 347 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + NG ++G DITEQ+KS I A D+LTG+ NR +F + + + + Sbjct: 348 QSM----ENG---GWVGTHEDITEQRKSEAQIQYLAQHDSLTGLFNRAAFNEHVHKVWEE 400 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + + T++ +DID++ +IND G + GD L RR+ +ARL G+ F Sbjct: 401 AMREQR-SFTILSLDIDRFSEINDTYGHSAGDTFLDEAARRLQAA-CGSAFIARLGGDEF 458 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+ + D + + M ++ I ++G + + ++ NA Sbjct: 459 MIVSSEGEQPARAGDICTRVLTAFEMTFHIEGHPIHSGCTVGVSIFPQDGADVETLITNA 518 Query: 678 ELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 ++A+Y AK RG + ++ + DL +A+ N +L L Y P D Sbjct: 519 DVALYRAKKEERGSVRFFEPAMDKQLREKRALLHDLGVAIGNGQLELHYQPQG-GPDGNP 577 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 G E L++W HP G I+ F+ +AEE I AI+ ++L R+ SW + P+ Sbjct: 578 FGFETLVRWRHPAKGLIAPGAFIPLAEETGSIVAIDAWILREACREAASWPN-----PLQ 632 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 I IN++ N+L + +++ +T +P R+++ +E V+M + R+ +L R++ +G Sbjct: 633 IAINVSPMSFQQNDLPGLIHSILLETGLNPKRLEIEITEGVLMQDFSRACSILRRIKNLG 692 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 + + +DDFGT S LSYL PFD +K + + + + AI+R+II + + + + Sbjct: 693 VRIAMDDFGTGYSSLSYLQSFPFDKIKIDQTFVAQIHKNVQSSAIIRAIISLGEALNLGV 752 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 IA+ + E L GC +Q + P ++ Sbjct: 753 IAEGVETEAQRDFLADAGCTEMQGYLLGRPQPISA 787 >gi|307720930|ref|YP_003892070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas autotrophica DSM 16294] gi|306979023|gb|ADN09058.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas autotrophica DSM 16294] Length = 592 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 135/580 (23%), Positives = 259/580 (44%), Gaps = 34/580 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIAT--ILGLASGSMHGPIRNWLPYI----HIN- 459 +L D++W D+ + I ++ + G + H Sbjct: 16 LNLLTQHLPDMLWVKDLEGKYIYANKAICNDLLMAKDTQEPIGKGDIFFALREREAHKEI 75 Query: 460 -DRDNFRTIL----DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D F + + + E+ + ++ + P + +G+I+ +G Sbjct: 76 ADWHTFGELCFNSDQLVIDSNKAMKFEEYGNVK--GKLMYLEVYKAPFYDKDGNIIGTVG 133 Query: 515 IANDITEQKKSL--------------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 DIT+ KK + + A D LTG+PNR F+DRLT + L+ Sbjct: 134 AGRDITQLKKIQFDLENSLEELDTKRDQLEFQANHDALTGLPNRVLFMDRLTQAIKLAKR 193 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + V+ +DID +KKIND LG VGD++L+ +T+R+ ++ D LARL G+ F II Sbjct: 194 -EKQHVAVLFLDIDDFKKINDSLGHHVGDEILIEVTQRMLLKMRKSDTLARLGGDEFCII 252 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + + + ++ + P E + ++ S+G + + + + +LKN++ A Sbjct: 253 INNIKDIDDVSKIIENGMEVFRDPFITQEHTLYISISVGVSLYPNDGKDAIALLKNSDAA 312 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK + + + ++ ++ A E E + + P + + + G+ Sbjct: 313 MYKAKQNTRDRYSFYDEEMTKKAYERIFLETEMRKAFEKDEFVVYFQPQVHAKTKILTGM 372 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP G I F+ +AE MI ++ ++++ W+ P + I Sbjct: 373 EALVRWQHPDMGFIYPDRFIPLAESTGMIIKLDRIVMKKAISQFSRWKKSGLEPK-KVSI 431 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+ L + + + ++ L+ S S ++ +E +MGNP+ S L +L ++GIS+ Sbjct: 432 NLTMTQLAEGDFYKFIKELLEYENVSASEVEFEITEREIMGNPDASIKALEKLNELGISV 491 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 +DDFGT S L+YL +P + +K + S + + AI+++II + +N+E +IA+ Sbjct: 492 AIDDFGTGYSSLTYLKRLPINKLKIDKSFIDNIPKDLSDSAIVKTIINLCENLELQVIAE 551 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E L C+ IQ + P+ + + +K+ Sbjct: 552 GVEEENQNDFLFENNCEDIQGFLFSHPINVKDMEEFIKKH 591 >gi|116748462|ref|YP_845149.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Syntrophobacter fumaroxidans MPOB] gi|116697526|gb|ABK16714.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Syntrophobacter fumaroxidans MPOB] Length = 702 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 133/477 (27%), Positives = 229/477 (48%), Gaps = 21/477 (4%) Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 R + N+ G+ + D+TE++K + +L A+ D LTG+ N+ S +R+ L+L Sbjct: 231 RILPNAEGEPT---VVMRDVTERRKMEKELLQLAYHDPLTGLLNQHSMRERIARALELPG 287 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI----------- 608 + ++ +DID K++N G +GD +L + R+ + D Sbjct: 288 QHGRMT-AILWVDIDHLKRVNATFGHELGDVLLQRVADRMLGCARRTDRKARLGSDQSIK 346 Query: 609 -LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +AR+ G+ F ++L ++ A+ A + ++ P L E+ VTASIG A Sbjct: 347 AVARMGGDDFVVLLTEISHVKGAANLAKRLLDDLSQPFVLDRHEVYVTASIGIAVHPHDG 406 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYH 725 + +LKNA+ AM+HAK G N+ + + S + + ++ DL +A+ EL++ Y Sbjct: 407 AEAGTLLKNADSAMHHAKAEGRNNFQFYTSSGKTAALRSLTLEGDLRMALARRELFVEYQ 466 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P I L E VGLE L++WDHP G I +F+ +AEE +I I ++L W Sbjct: 467 PEIDLKTGETVGLETLVRWDHPTLGLIPPLDFIPLAEETGLILPIGEWILSIACMQNAIW 526 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 PI + +N++ L + + ++ + P ++L +ES +M N + Sbjct: 527 HKSGL-EPIRVAVNLSGHQFRQRNLIKTIAKTLTNSRLDPQHLELEITESTLMENAASTI 585 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSII 903 + L+ +G+ L +DDFGT S LSYL P D +K + S + AI R+II Sbjct: 586 HTVKELKSMGVRLAVDDFGTGYSSLSYLRRFPLDVLKIDRSFIRDVTINADDAAITRAII 645 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 MA N+ +IA+ + E ++ L CD Q + PL + K L+++ + Sbjct: 646 AMAHNLNLEVIAEGVENEQQLQFLQENNCDMAQGYYYCRPLTPAKLTKHLEKQSSGL 702 >gi|256158917|ref|ZP_05456764.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti M490/95/1] gi|256254288|ref|ZP_05459824.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti B1/94] Length = 703 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPEY- 524 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 525 ----IKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|254515058|ref|ZP_05127119.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium NOR5-3] gi|219677301|gb|EED33666.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium NOR5-3] Length = 815 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 159/829 (19%), Positives = 312/829 (37%), Gaps = 32/829 (3%) Query: 132 PSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQ-IYLWEPNFYKDTVNSFTL 190 G R S F + V ++ +++ ++ + W + T Sbjct: 7 GGTGSRHFRE-QHGSASFGLLFA----VALLLTVASFSIFTRLMDWSWVAIEFHSALET- 60 Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250 +G L + ++ + + G G S Sbjct: 61 -----VGAVIALIPVTVALAINTQTPREALGIPVICGMAG-----MGVFSLAHAAVPPGN 110 Query: 251 LIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY--PMVTA 308 S F R+ A + L + P + Sbjct: 111 AFVWLHSLAIFFGGTCFFSNFIATTARFSGVQTLYLVITAASLISLSAIVQPDAVPQMII 170 Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD--NDI 366 S A ++ + + + RA + + + ++ L + I Sbjct: 171 SGQFSNFAVLLNLLGGALFLLSIPSFYRAYRSSHGEQHLLFASVAFCLGLSGVLFPFSQI 230 Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + + + +L G +D + + ++ D + + Sbjct: 231 WSDVWWYWHFVFFLGLLLMAGLFLLLLRRGFTGSQADAAMLAAITENANAAIYAKDPLGN 290 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 I GL+ ++ G + + + RRG +++E + Sbjct: 291 YRFVNKYWEQIFGLSIAAVVGRRDE--DLFPPSMARALSQRESNVMDQRRG-VEFEDSLS 347 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + + + ++ + P+ S+ ++ GI DI+++K E + A D+LTG+PNR Sbjct: 348 SPNGRRAFISAKF-PLLASDSTLMGLAGIYTDISDRKALEEQLEQLAHFDSLTGLPNRAL 406 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 DRL + S + R V+ +DID +K IND LG GD++L++++ R+ +L+ Sbjct: 407 ARDRLAQGIAQSKRQGS-RLAVLFLDIDNFKVINDSLGHHAGDELLLAMSGRLRNILRGG 465 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D L+RL G+ F +L+ + A + + L + + SIG A + Sbjct: 466 DTLSRLGGDEFLAVLLDVKSREDAVFAANKLLATTKERFEALGNSVHSSLSIGLALYPED 525 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVY 724 ++ E++++A+ AMY AK G V +++ + + + +L A+E+ + L + Sbjct: 526 GLSIDELIQHADTAMYQAKSAGRGRVATYQRQQTSDVTTELHLLSELRDAIEHEQFELHW 585 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P + L D + G EAL++W P G + F+ AE +I + ++L + I Sbjct: 586 QPQVNLRDGSLCGAEALLRWKRPGAGCVLPQFFIPFAESHGLIAELGDWVLAAALKQIGI 645 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W Q + IN+A DL D+ + + +PSR+ +E V+ + E Sbjct: 646 WAKQNSDATF--SINLAPADLADDGFMPKVLGYCEEHKVTPSRVVFEITEQDVLSSLELG 703 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSI 902 R + +LR+ G +L++DDFGT S L L PF +K + S + G E AI+++ Sbjct: 704 RENIMQLRQQGFTLSIDDFGTGNSSLLRLKKFPFHELKIDQSFVQGIPEDAESLAIVQAT 763 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + MAK ++ ++ + + E L +GC Q + P+ K Sbjct: 764 LSMAKALDMQVMTEGVETEQQAGFLLGIGCIKAQGFYFGRPVSAAEFEK 812 >gi|261221443|ref|ZP_05935724.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94] gi|265997405|ref|ZP_06109962.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1] gi|260920027|gb|EEX86680.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94] gi|262551873|gb|EEZ07863.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1] Length = 709 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPEY- 530 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 531 ----IKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694 >gi|291570749|dbj|BAI93021.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 1208 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 154/583 (26%), Positives = 288/583 (49%), Gaps = 16/583 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +V L+ +Q F + E+ + + ++ D+ ++ P +A I Sbjct: 622 LVKLVSSVAMQL---GSVFQRK--QAEEKYRDIFENALEGIFQIDLQGKYISANPALAKI 676 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G S + ++ D + + ++ + + +E +V D Q W+ Sbjct: 677 FGYESQQQLLVRGKQIKSVY-ADPETYNRFIN-LLQTKGSVSNFEAQVYRRDGQSIWIWQ 734 Query: 498 RIRPMS-NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 R + + + +L Y G +IT K++ + +A D+LT + NR FLD+L L Sbjct: 735 NARALYSDRHDRVLYYEGSIMEITHLKETEAKLRHSASHDSLTDLWNRAFFLDKLNDSLR 794 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 T DN + ++ +D+D ++ IND LG A+GD +L+ +++R+ + + ILARL G+ Sbjct: 795 KCKTLDNYQFAILFLDLDGFQFINDSLGHAIGDQLLIEISKRLTDCVDSH-ILARLGGDE 853 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLK 675 F I+L + + + D A +++++ +PI L + +I ASIG + + +S E+L+ Sbjct: 854 FTILLENITDIQEAIDVAERIQEALKLPIFLGDNQIFTGASIGIVEGNNSNYESSPEVLR 913 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDE 733 +A+ AMY AK +G F + + + + L LA++ + L Y PII L Sbjct: 914 DADTAMYRAKRQGKGCYVVFDSTMRTNALRRLYLQTQLRLALQEQQFELNYQPIIELSTG 973 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MP 792 I G EAL++WDHP+ G IS +EF+ IAEE +I I ++L + + W+D+ Sbjct: 974 TIAGFEALLRWDHPQEGLISPAEFIPIAEEAGLIVDIGEWVLRQACFQLSEWKDKFAVYS 1033 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +N++S+ + +L + ++ +T + S +KL +E+ +M +PE + L +L+ Sbjct: 1034 NLMMSVNLSSQQFTN-DLGRRISNILVETGVAGSELKLEITETAIMNDPELAIATLQQLK 1092 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 + I + +DDFGT L YL P D +K + S ++ E + I+R I+ +A++++ Sbjct: 1093 QQQIKICIDDFGTGYCSLGYLHKFPVDILKIDRSFVSQIPEGEDKREIVRVIVALAESLK 1152 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 IA+ I + L + C Y Q PL ++ LL Sbjct: 1153 MDAIAEGIETAEQLHHLQKFNCKYGQGYFFFRPLNRQAVEALL 1195 Score = 64.6 bits (156), Expect = 8e-08, Method: Composition-based stats. Identities = 24/199 (12%), Positives = 64/199 (32%), Gaps = 14/199 (7%) Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 +R + ++ + + + LVL + + + Q +L Sbjct: 294 KRNLYSPVYRQILLLSGTMMLFIMVG-----------TTCLVLTIRPLTNQISQEILERH 342 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + + D+ P + LG + G + Sbjct: 343 KAEAELIKEKNFTQTLLEANPAFFIVLDVEGKVKFMNPSMLHTLGYKQEEVEGMNYS-AT 401 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYI 513 ++ + + + + + RR ++ E + D++ + R + N + ++ Sbjct: 402 FVPKEEGKSAPWVFELMI-NRRLPIRTEETMITKDDREIIVEWYGRAVFNKETDEYEYFV 460 Query: 514 GIANDITEQKKSLEGILCN 532 G DIT++K++ E I Sbjct: 461 GAGLDITDRKRADEEIQLL 479 >gi|160896183|ref|YP_001561765.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160361767|gb|ABX33380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Delftia acidovorans SPH-1] Length = 881 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 135/561 (24%), Positives = 246/561 (43%), Gaps = 15/561 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH-IN 459 + + ++ S + D R P I G AS + G R +H Sbjct: 311 RELAQAAVVFDSSHQGIMVVDPGRRITRVNPAFTRITGYASEDVIGKTPRVLSSGLHGPE 370 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 F + + + R G E R + ++ I + G+I YIG+ DI Sbjct: 371 ----FYRQIWACIE-RDGFWHGEIWNRRKTGEIFAEMLSISAAQGAGGEIEHYIGVFTDI 425 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + K + D LTG+PNR+ +DRL + +A + V +D+D +K+I Sbjct: 426 SHIKAHEAELERVTHYDLLTGLPNRRLLIDRLNQAMLRTAREGR-SLAVCFLDLDGFKEI 484 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND+ G A GD +LV + + +L+ D LARL G+ F ++L ++ A + + Sbjct: 485 NDLHGAAAGDALLVGVAAHLKSVLRSEDTLARLGGDEFVLLLSHIGSAEHCATILDRVLE 544 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + + P+ + +R ++VTAS+G + + + +L++A+ AM AK G N + F + Sbjct: 545 AASRPVPVQDRVLSVTASLGVSLYPDDQADPDLLLRHADQAMCVAKQAGRNRYQLFDPEN 604 Query: 700 FRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R + L A+E E L Y P + L +VG EAL++W P+ G + EF Sbjct: 605 DRKAHARRLQLGWLRQALEKGEFLLHYQPKVELGGGRLVGAEALLRWHDPRQGLRAPGEF 664 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + + + + +++ W + + IN+++ LLD M + Sbjct: 665 LPFVAGSDLERPLGDWVIGEAVAQAARW--FGQGLDLCVSINVSANQLLDGGFHAKMAQV 722 Query: 818 ISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 +++ P I+L ES + + E++ ++G+ R++GI LDDFGT S L+YL + Sbjct: 723 LARHPDLPPHLIELEILESAAIADMEQAIQVMGQCRQLGIRFALDDFGTGYSSLTYLRKL 782 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P ++K + S + + I+ +I +A + +A+ + + L MGC Sbjct: 783 PVQSLKIDQSFVRDMLADPDDLGIVEGVIQLASTFQLESVAEGVETPKHARRLRDMGCHV 842 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q +A P+ + + Sbjct: 843 AQGYGIARPMPADQLPAWAAR 863 Score = 65.4 bits (158), Expect = 5e-08, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%) Query: 212 VNRSSMLIPTFAM-AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 R + + T + I D + + G L + + + + L+ F Sbjct: 5 ARRRFIGLITVSYGLLAFAWIILSDKLLFALAGSADIGWLSVGKGLFFVLATDFLLFFAL 64 Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330 + + G + F M A +A + + ++ Sbjct: 65 CSVPAAQDSGASAIAQEMGPRRFPVWASYLFSLAMSLAVLAASSTLASHFGERSLLLLFM 124 Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390 + A++ L+ F + T +D V + + + + +Q Sbjct: 125 LPVLVSALIGGLGPGLLATAFAAYSLDQTDGVDVRDWAQWGVVAVNGLAVSVLAETLQRS 184 Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-- 448 L + + + G+ D V+ D+ + A+++G + + G Sbjct: 185 LRKANMQRQLLDS------VISGTSDAVFVKDLRGRYLLVNRAAASLVGRQAEDIVGKDD 238 Query: 449 ----IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 I D+ R + + + +++ P+ N Sbjct: 239 FALFPFGIASAIRRKDQAVLRQEVATHEEQLTVEP----------GRTLDLLVTKGPVRN 288 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNA 533 + G I GI+ DITE+K+ E L A Sbjct: 289 TAGHIAGLFGISRDITERKR-FERELAQA 316 >gi|163842484|ref|YP_001626888.1| diguanylate cyclase [Brucella suis ATCC 23445] gi|163673207|gb|ABY37318.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445] Length = 703 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFPHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|326537956|gb|ADZ86171.1| diguanylate cyclase GGDEF domain-containing protein [Brucella melitensis M5-90] Length = 691 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 100 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 159 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 160 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 216 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 217 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 276 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 277 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 334 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 335 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 393 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 394 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 453 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 454 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 511 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 512 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 568 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 569 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 628 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 629 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 676 >gi|163781840|ref|ZP_02176840.1| sensory box/GGDEF family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883060|gb|EDP76564.1| sensory box/GGDEF family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 959 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 121/434 (27%), Positives = 220/434 (50%), Gaps = 8/434 (1%) Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 E + A+ D LTG+PNR DR+ + + + + + + ++ ID+D +K +ND LG Sbjct: 527 EELKKMAYFDPLTGLPNRTLLRDRIESAIHFANRNGS-KVAILFIDLDYFKTVNDTLGHD 585 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +LV + +R+ + + D +AR G+ F ++ + + A + + P Sbjct: 586 VGDRILVQVAKRLSSVFRETDTVARFGGDEFVAVIPDVRDLKDVVQVAERILSLFSTPFE 645 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDR 704 +I ++AS+G A + + +E++KNA++AMY AK G ++ F + Sbjct: 646 ANGEDIYLSASVGIAVYPDNGENPTELIKNADMAMYRAKEEGKSNFSFFTEEMNSKAVEI 705 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + +K L A+E E L Y PI L D IVGLEAL++W P G +S ++FM I EEL Sbjct: 706 LSVKNKLHKALERGEFLLYYQPIYSLGDNSIVGLEALLRWRDPDRGLVSPAKFMPILEEL 765 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 ++K + +++ + W D+ I++ +NI+ + +D + + + S T + Sbjct: 766 GLVKEVGRWVMGEAFKKSREWGDRYG---IYVSVNISPRQFMDRNFVKRVLQIASDTNAN 822 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + L +E+ +M NPE S +L RLR G + +DDFGT S L+YL +P D +K + Sbjct: 823 NEHVVLEITETSLMRNPEESVSILKRLRAKGFKVAVDDFGTGYSSLAYLKRLPIDIIKVD 882 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + +I+ ++I ++K++ +A+ + + L +GCD Q Sbjct: 883 MTFTQGMVKSNVDRSIVMAVIGLSKSLGLKSLAEGVETREQVNILRELGCDLAQGYLFGK 942 Query: 943 PLGFNSILKLLKER 956 P+ L+++ Sbjct: 943 PMKEEEAEALIRKE 956 >gi|307610217|emb|CBW99775.1| hypothetical protein LPW_15411 [Legionella pneumophila 130b] Length = 840 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 151/806 (18%), Positives = 325/806 (40%), Gaps = 63/806 (7%) Query: 193 GIIIGVASLLAIFLTIFYMVN----RSSMLIPTFAMAWVVLGY----ISIDFGFLSKLVN 244 I+ A + +SS+++ + LG+ + ++ G + Sbjct: 54 AIVYNTALCFIVLSLAILFSLNCYYKSSLILSIIVFVFSGLGFSQHILGVNLGVDEIFFH 113 Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK-----VGYITFSGIACIAILFCM 299 + + ++ + N + + + C+AILF Sbjct: 114 HYHAFKNAYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGALGFLVFCLAILFIS 173 Query: 300 SFY------------YPMVTASIARITLASIVLYYTYFIIYHGMKGYER-AVLLIPAWIL 346 ++ PM + + S Y+ + A+ + ++ + Sbjct: 174 GYFSEIQHAYQWGDKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCSFCI 233 Query: 347 IFIWFIGL--WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 I + + + RL+ V G + + L G + LA ++ Sbjct: 234 ILTFTLLSFEILEKENRLNLSFSVATFVIG-IFLSFLFGLVIRLWQLAKLSAIAAKYAFL 292 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLAS----------GSMHGPIRNW 452 E + + D + D + + G+ ++ + N Sbjct: 293 E-VEATLESTADGILVVDKESKVINYNQRFLDMWRQGINPPRIINYLDIKEEINKQLVNK 351 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 IH ++ + + + +E +++ ++ + + I+ Sbjct: 352 REVIH---------RINQTIKHPDHKNSFELKLK---GNLYYDCYTQPLKLDED--IIGR 397 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + DIT K+ + + D LT +PN+ +D L + + +D + V ++D Sbjct: 398 VWSFRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLGYAMKGAISDKKI-VGVYLLD 456 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++ +INDV G + GD+++ + +R+ + + IL R+SG++F I++ S + + Sbjct: 457 LDRFTQINDVFGHSKGDEIIKIIAKRLKDCVPVEHILGRISGDQF-IVIASLDEIREAVL 515 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 + + P+ + I ++ SIG + + T +L A++A+ K G N+ Sbjct: 516 GVTRLLAAFHEPVKMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKADIALSRTKIEGRNNF 575 Query: 693 ESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + ++++ +L A++ E L Y PI+ L + G EALI+W+HP+ G Sbjct: 576 QFYTRDMNTYTLEHILLENELRDAIKKREFVLYYQPILELRSLNVNGFEALIRWNHPRNG 635 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 + +F+ +AEE+ +I I ++L + + I +W+ Q + + +NI+ K L L Sbjct: 636 LLLPEKFIQLAEEIGIISEIGDWVLTTVCKQIKTWQKQGVN-NLKVAVNISPKHLRFRHL 694 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++S+ I+L +ES+++ L L++IGI +++DDFGT S L Sbjct: 695 PIRINEILSEFQVKSESIELELTESILIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCL 754 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL +P D +K + + + A++++II MAKN+ +IA+ I + ++ L Sbjct: 755 SYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIAEGIENKHQLEILQ 814 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954 +GC Y Q + P+ + L+ Sbjct: 815 NLGCHYGQGYYFYHPMPPEKCTQFLQ 840 >gi|332185589|ref|ZP_08387337.1| sensory box protein [Sphingomonas sp. S17] gi|332014567|gb|EGI56624.1| sensory box protein [Sphingomonas sp. S17] Length = 871 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 157/740 (21%), Positives = 308/740 (41%), Gaps = 20/740 (2%) Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284 +L + L+ S +L + +A + A+ + + F + Sbjct: 27 LLSILQNLVAIAIVLAISWRHDSRDLFLEKAAAGAAIHLATLAFGMVLWRGEARQWPFYR 86 Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 + + ++ + ++ A T + ++ M + + Sbjct: 87 LKQWLVVMGFVIAVATSPLLLIIAQAHDGTAGWASALTLFGAMWATMAMLYPVRGAMIGY 146 Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 F + + + A++ L IV+ +Q Sbjct: 147 SFGFAFLAPIAALAWG-AALPLTLAAVLSPLTFIVLNARRAGQMDYDLAAARAQAFGQGQ 205 Query: 405 ERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + + G+G W+ D + +A L G + L + + Sbjct: 206 QAVKMIAEFEEHGTG-WFWETDRHGRLTYLSNKVAQDLRAIGIDATGRLLTDLFQMDSS- 263 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAAD--NQFHWMIIRIRPMSNSNGDILRYIGIAND 518 L + R Y ++D Q W I RP+ + G + G +D Sbjct: 264 APGTERTLSFHMASRTSFSDYTVCAASSDPLAQERWWSISGRPIIDGIGRFRGFTGSGSD 323 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +TE+++S I A D LTG+ NRQ L L S + + ++D+D++K Sbjct: 324 LTEKRRSEAEITRLALFDGLTGLANRQRMKLSLDKTLKQSV-NPYRPTALFLMDLDRFKA 382 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG GD +L + RR+ + + ++ RL G+ F I+L + +++ A + Sbjct: 383 VNDTLGHQAGDLLLQQVARRLEQTVGDVGLVGRLGGDEFQILLPGIDQRERLSALATDII 442 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 +++ P ++ E+T+ SIG A S +++NA+L +Y AK G + + Sbjct: 443 ATLSRPYDIQGVEVTIGCSIGIAIAPHDGDDSQALIRNADLGLYAAKGDGRGVHRFYAEA 502 Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R ++EDL +A+ + +LVY P++ + IVG EAL++W HP G+I + Sbjct: 503 MLEGARSRKRMEEDLRIAIAQGQFHLVYQPVVSTREARIVGYEALLRWTHPTQGDIPPGQ 562 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I+ I +++ + SW P + +N++S L + Sbjct: 563 FVPVAEECGLIEQIGEWVMRTACLEAASWP-----IPARVAVNVSSVQFTKPNLTALVAQ 617 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++++ +PSR++L +ESV + + + S L+ +G+ L LDDFGT S L YL + Sbjct: 618 ALTQSGLAPSRLELEITESVFLRDNQESERKFAALKALGVRLALDDFGTGYSSLGYLRHA 677 Query: 877 PFDTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + G+ + AI+R+I+ +A + A+ + + +I+ + +GC Sbjct: 678 PFDKIKIDQSFVRGAVGTGSRNAAIIRAIVTLADTLGMETTAEGVELQDEIELIRELGCS 737 Query: 934 YIQDSHVASPLGFNSILKLL 953 +IQ P+ + + ++L Sbjct: 738 HIQGFVYGRPVPVDEVHQML 757 >gi|114563820|ref|YP_751333.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114335113|gb|ABI72495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 714 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 127/621 (20%), Positives = 264/621 (42%), Gaps = 29/621 (4%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVI---QHVLATGYFSQGIFSDGERQSLAVL 412 + + + + + + + V +I Q + + + + E + Sbjct: 88 VRLKHKSGHYVWVLSTGKAIAWDVEGKPTRMIGMHQEITFRKRQEELLATTTELLRESQE 147 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 W ++ + T + I + + Y+ + + F+ LD+ + Sbjct: 148 IGKLGGWQLNLHNGDLIWTDETYRIYETTPQEYIPTVEMGVSYLLPDSKKLFQEALDAAI 207 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL------ 526 E Q + +G + GI DIT++K + Sbjct: 208 -QLGEEYDLELETYTTKGQKIDVRTTCHVTY-VDGVAEKLSGIFQDITDEKNNQRKLEKS 265 Query: 527 --------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 E + A D LT +PNR DR+ L + + + + +D+D +K+ Sbjct: 266 NQVLKEVNEKLKFAANYDPLTHLPNRNLLADRMQQALIKAQRNSK-QIAIAFLDLDGFKE 324 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND G +GD+ L + R ++ D LAR G+ F +IL ++ + ++ + Sbjct: 325 VNDAYGHDIGDEFLCLIANRFKTAIREDDTLARFGGDEFVLILDDLDSHQEASEILQRIL 384 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 SI + + +++T SIG + + ++++A+ AMY AK +G N + F Sbjct: 385 SSITEIFIIENKRLSITVSIGVTFFPQDNSHADILIRHADQAMYRAKEQGKNCIHEFDFE 444 Query: 699 SFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + ++ ++ + N+E L Y P I + EI+GLEALI+W HP G +S Sbjct: 445 NDVAIKLQYRELEYII-NGFNNNEFLLFYQPKINMESNEIIGLEALIRWQHPTEGLLSPF 503 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ EE + + +++++ + WR + I I +N++ L + + + Sbjct: 504 RFLPYIEEEPLAIELGKWVIDQAIKQHNEWRRLGIV--IPISVNVSPLQLQHEDFIKQLN 561 Query: 816 ALI-SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ T + +++ ES ++ + + ++ + +++GI +LDDFGT S LSYL Sbjct: 562 EILFLNTSFQAGQLEFEILESSIIKDTQHIAEVISQCKQLGIRFSLDDFGTGFSSLSYLR 621 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 + D +K + S + AI++S+I ++K ++IA+ + + ++L +MGC Sbjct: 622 KLKTDVIKIDQSFVIDMLDDMDDQAIVKSVIELSKTFGRSVIAEGVETQEHGRQLLKMGC 681 Query: 933 DYIQDSHVASPLGFNSILKLL 953 Q +A P+ +SI + + Sbjct: 682 QLAQGFGIARPMPASSIPEWI 702 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466 L + + VWDW + D + A I+G + + WL +H +D Sbjct: 12 ELVLDATNVGVWDWRVENDGLVCNERWAEIIGYTLSELMPVDYQTWLDVLHPDDLPKAIK 71 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKS 525 D + + E R++ + W++ + + + G R IG+ +IT +K+ Sbjct: 72 NYDYHCQGQSELCELEVRLKHKSGHYVWVLSTGKAIAWDVEGKPTRMIGMHQEITFRKRQ 131 Query: 526 LE 527 E Sbjct: 132 EE 133 >gi|171319088|ref|ZP_02908211.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia ambifaria MEX-5] gi|171095686|gb|EDT40643.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia ambifaria MEX-5] Length = 749 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 127/573 (22%), Positives = 247/573 (43%), Gaps = 23/573 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 ++ + E L V + + + + P ++ + G + G + + Sbjct: 182 IARQLVHSEEHHRLVVNSLNEGILVVSPDGVVIASNPSANRMMRVK-GELVGRRLSSVIL 240 Query: 456 ---------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS- 505 I ++ + + L Y AD W+ P+ Sbjct: 241 YKLREDGTPIAPDEWPSRLA-----LTTATPLLDYSAGFGLADGDIIWVRGNAVPIVKPG 295 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNL 564 + +DI +++ + + A +D LTG+ NR+ +R+ + A Sbjct: 296 ETRPESVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGARDAAAGPA 355 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R ++ ID+ +KK+ND G GD +L S+ R+ L R+ G+ F I++ Sbjct: 356 RVAILFIDLVGFKKVNDTAGHDAGDALLRSVAARLAACAGGRHALTRVGGDEFVILVDQC 415 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ +++ A + +IA P + E + SIG + + +++NA+ AMY A Sbjct: 416 DDPDELSALAREVIDTIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDA 475 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG NH F + I++ L A+ + L L Y P++ VG EAL+ Sbjct: 476 KQRGRNHFTFFTAQLNLRLQRRFAIEQSLRRAIASDALRLAYQPVVDARSGRTVGAEALL 535 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W P+ G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ Sbjct: 536 RWTSPELGPMSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSP 594 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L E + +++T P ++L +E ++M + + +L L + + +++DD Sbjct: 595 RQF-HEGLVESVDRCLAQTQLDPGALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDD 653 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + Sbjct: 654 FGTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVET 713 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L ++GCD Q PL + L Sbjct: 714 QAQSRFLQQIGCDMQQGYLFGRPLDPTDYARRL 746 >gi|23501126|ref|NP_697253.1| sensory box protein [Brucella suis 1330] gi|161618200|ref|YP_001592087.1| diguanylate cyclase [Brucella canis ATCC 23365] gi|254705393|ref|ZP_05167221.1| diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|260567150|ref|ZP_05837620.1| PAS-associated domain-containing protein [Brucella suis bv. 4 str. 40] gi|23346999|gb|AAN29168.1| sensory box/GGDEF domain/EAL domain protein [Brucella suis 1330] gi|161335011|gb|ABX61316.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365] gi|260156668|gb|EEW91748.1| PAS-associated domain-containing protein [Brucella suis bv. 4 str. 40] Length = 703 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDFD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGFVEDITERREIEKRMVHIAMHDSLTGLPNRAYFPHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|172062985|ref|YP_001810636.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia ambifaria MC40-6] gi|171995502|gb|ACB66420.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia ambifaria MC40-6] Length = 749 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 127/567 (22%), Positives = 247/567 (43%), Gaps = 11/567 (1%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 ++ + E+ L V + + + + P ++ + + + + + Y Sbjct: 182 IARQLVHSEEQHRLVVNSLNEGILMLSPDGVVIASNPSANRMMRVKGELVGRRLSSVILY 241 Query: 456 IHINDRDNFR-TILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPMSNS-NGDILR 511 D S + + ++ V AD W+ P+ Sbjct: 242 KLREDGTPIAPDEWPSRLAFTTATPLLDYSVGFGLADGDIIWVRGNAVPIVKPGETRPES 301 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLRPTVMV 570 + +DI +++ + + A +D LTG+ NR+ +R+ + A R ++ Sbjct: 302 VLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGTHDAAAGPARVAILF 361 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+ +KK+ND G GD +L S+ R+ L R+ G+ F I++ ++ ++ Sbjct: 362 IDLVGFKKVNDTAGHDAGDALLRSVAARLAACAGGRHALTRVGGDEFVILVDQCDDPDEL 421 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + A + +IA P + E + SIG + + +++NA+ AMY AK RG N Sbjct: 422 SALAREVIDTIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDAKQRGRN 481 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 H F + I++ L A+ + L L Y P++ VG EAL++W P+ Sbjct: 482 HFTFFTAQLNLRLQRRFAIEQSLRRAISSDALRLAYQPVVDARSGRTVGAEALLRWTSPE 541 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ + Sbjct: 542 LGPMSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQF-HE 599 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 L E + +++T P ++L +E ++M + + +L L + + +++DDFGT S Sbjct: 600 GLVESVGRCLAQTQLDPGALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDDFGTGYS 659 Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL P +K + S ++G +AI ++++ MA ++ + A+ + E Sbjct: 660 SLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVETEAQSWF 719 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953 L ++GCD Q PL + L Sbjct: 720 LQQIGCDMQQGYLFGRPLDPADYARRL 746 >gi|118590505|ref|ZP_01547907.1| PAS:GGDEF protein [Stappia aggregata IAM 12614] gi|118436968|gb|EAV43607.1| PAS:GGDEF protein [Stappia aggregata IAM 12614] Length = 919 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 142/635 (22%), Positives = 262/635 (41%), Gaps = 25/635 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI----------VILIGFTVI 387 L P I +G + R+ + + L + L ++ F + Sbjct: 281 RLFTPFLFYTAILAVGAAFLV-NRITSAGLGRLLTYAMSLRQDKVVSPPPPGLIFEFNKL 339 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + + + + + GS V + + + G G Sbjct: 340 ATMFQ--AAFESVRNRDAQFKDMIDGSMHGVLVH-ANHRILYVNDALLKMCGYEPGDPKQ 396 Query: 448 PIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + + ++ + R+ + YE + D + W+ +R Sbjct: 397 LVDSPTLVLYAPEEHSRLRSYYNMRENGSGAPRAYEVKGIRKDGETLWLEQHVRLTEWR- 455 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G+ Y DI+E+K+ E NA D LTG+PNR+ F+DRL L L Sbjct: 456 GERAYY-ATITDISERKRQEELATKNANFDILTGLPNRRLFMDRLRQALQRGKHMGELT- 513 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 +M++D+D++K +N+ G GD V+ ++ R+ + L +AR+ G+ F IIL + + Sbjct: 514 ALMILDLDRFKTVNETYGPKAGDKVIEAVAARLTKTLGPDQTVARIGGDEFAIILSNPED 573 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTA-SIGFASWTSSKITSSEMLKNAELAMYHAK 685 +I A + ++ PI+L + V A S+G A +L A+ +M AK Sbjct: 574 RWQIEQTARDILTTVGDPIDLEDGSQAVLAGSLGIAVCPHDGTNDEALLMEADTSMLQAK 633 Query: 686 HRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G F ++ L A+E +L+L + PI+ +V E L++ Sbjct: 634 VDSGASYRFFATRMNEQTARASQVEIALRQAIEKGDLHLNFQPIVDYERNRVVSCETLVR 693 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W PK G + +EF+ +AE+ +I + +L S I +NI+ + Sbjct: 694 WTDPKLGVVPPAEFIKVAEDCGLIVPLGEQVLREACAFFQSCNRNGLQLDG-ISVNISPR 752 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS-RLLLGRLRKIGISLTLDD 862 D + ++ ++ +T PSR++L +ESV+ + + +L + K+GI ++LDD Sbjct: 753 QCRDADFLPRLEDILGETGMDPSRLQLEITESVMFDDQRINPVEILQAISKLGIKISLDD 812 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LS+L +P DT+K + S + G + A++R+II MA ++ ++ + Sbjct: 813 FGTGYSSLSHLKRLPIDTLKIDRSFIMGLERDQDGQALVRAIISMAASLHIDVVCEGAET 872 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + GC IQ + PL + L Sbjct: 873 HEQCELIHSFGCSLIQGYSFSRPLSGIDFQRYLAN 907 >gi|261756108|ref|ZP_05999817.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella suis bv. 3 str. 686] gi|261745861|gb|EEY33787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella suis bv. 3 str. 686] Length = 709 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 178 AASTASGQPIDEAIGSIDFD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG DITE+++ + ++ A D+LTG+PNR F + Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGFVEDITERREIEKRMVHIAMHDSLTGLPNRAYFPHHV 294 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694 >gi|294011509|ref|YP_003544969.1| putative signal transduction protein [Sphingobium japonicum UT26S] gi|292674839|dbj|BAI96357.1| putative signal transduction protein [Sphingobium japonicum UT26S] Length = 840 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 132/574 (22%), Positives = 252/574 (43%), Gaps = 10/574 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + ++ + A + + + ER LAV + +WD+D V T + + T+LGL+ Sbjct: 266 YGTLEDIHAQKLAQRELANSEERFRLAVQSARLGIWDFDAVAGTRTWSREFRTMLGLSDT 325 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAAD-NQFHWMIIRIRP 501 L +H DR +LD R + RV AD W+ Sbjct: 326 E-PATSELALRLVHPEDRPRLAEMLDVVASERMPPHFEATLRVYRADTGALRWIKSVGWS 384 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + +G LR I D+TE++ S E I A D +T +PNR + L + + + Sbjct: 385 SFSDSGKPLRVIVTFQDVTEERNSEERIRWAATHDPMTRMPNRALWQATLEEMTEQARRT 444 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++++DID K+ ND LG GD +L +R ++ RL G+ FG+I Sbjct: 445 GE-SFGLILVDIDDLKRTNDTLGHDAGDALLCGFAQRFASCAPADAMIGRLGGDEFGMIA 503 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 S +S ++ ++ + + +P R + S+G A + ++E+LK A+LA+ Sbjct: 504 PSLASSAALSAWSAELLGGVRVPYVHNGRSLDYGISMGGAVFGEHGEDAAELLKAADLAL 563 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y +K G + F+ + + A+ + + Y P + I+G E Sbjct: 564 YASKSTGRGRLTLFQSQLRADAQQRSSMIHMARQAIVDDLVVPYYQPKADMRTGRILGYE 623 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP+ G S + + + ML ++ RD+ W + P + IN Sbjct: 624 ALLRWEHPRTGVHSPDTIAAAFDNAELAVELTEKMLAKVVRDVDRWLRAGHDPG-RVAIN 682 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858 ++ D + ++ + + A +++ P + ++ +E+V +G E+ L RL G+ + Sbjct: 683 ASAADFIQHDFADYVLAHLARCAVPPQQFEIEVTETVFLGRGAEQVERALHRLSSAGVRI 742 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 LDDFGT + LS+L P D +K + S ++ + I+ +I+ + ++ ++A+ Sbjct: 743 ALDDFGTGYASLSHLKQYPVDVLKIDRSFISNIEQDAGDAVIVDAIVKLGSSLGMEVVAE 802 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + ++ L GC Q + P + ++ Sbjct: 803 GVETAGQVEMLIARGCTIGQGYLMGRPRPWAAVR 836 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 3/148 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 I +H L + + + +V S + W D P + G+ Sbjct: 137 TIEDIDERHDLDRHALAAALAESRQHYRWSVELSPQVPWTASASGDIEEVGPRWQELTGI 196 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 A G R W+ +H +D D + + + ++R+R +D + WM R Sbjct: 197 APARARG--RGWIDSLHPDDVDRTLAVWSEKLRT-GDPVDVDYRLRLSDGGYRWMRSRAS 253 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEG 528 ++ G I+R+ G DI QK + Sbjct: 254 ARRDAKGRIVRWYGTLEDIHAQKLAQRE 281 >gi|52841126|ref|YP_094925.1| sensory box protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296911|ref|YP_123280.1| hypothetical protein lpp0952 [Legionella pneumophila str. Paris] gi|52628237|gb|AAU26978.1| sensory box protein/GGDEF/EAL domains [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750696|emb|CAH12103.1| hypothetical protein lpp0952 [Legionella pneumophila str. Paris] Length = 771 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 137/576 (23%), Positives = 264/576 (45%), Gaps = 16/576 (2%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGL--ASG 443 + + + + A+ S V D+ ++ + I G Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQHA 255 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + + + + E + +F+W I + P+ Sbjct: 256 LGKGLLTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +S G + YI I ND+T+++ + +L A D+LT +PNR +DR+ + + + Sbjct: 311 DSFGYVKHYICILNDVTQRRDMEDQLLLQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D+D++K ND LG ++GD +L ++ R+ + + D +ARL G+ F I+L Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 +N L+ A + K I PI + + + +T S+G + + ++K+A+L+MYH Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489 Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + ++ + + + L A++N EL+LVY P+I L +VG EAL Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W G +S ++F+ +AEE MI + + +++ + W + I +N++ Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACIQVKEWHKA-GFKNLSIAVNLS 608 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L E + ++ + ++L +ES+++ + + + L+ +G L +D Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKDMGTKLVID 668 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P D +K + S +T + AI ++II + ++ ++A+ + Sbjct: 669 DFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLVHSLNLQVLAEGVE 728 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E +T GCDY Q +P +IL+ LK Sbjct: 729 NEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764 >gi|67924578|ref|ZP_00517994.1| PAS:GGDEF [Crocosphaera watsonii WH 8501] gi|67853577|gb|EAM48920.1| PAS:GGDEF [Crocosphaera watsonii WH 8501] Length = 860 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 130/567 (22%), Positives = 257/567 (45%), Gaps = 13/567 (2%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNW 452 + + +R S + + + V +LG +S + G Sbjct: 281 RKREIKLTTGKDRYRFFFEQSTEGILVINPDTKHIVEANQAYCKLLGYSSADIIGCNLYQ 340 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 L I +R++F IL+ ++ F R + + +I + ++L Sbjct: 341 LLEI---ERESFNQILEQITPDNPYIIRESFH-RHQNGSLLAVAGKINLTNYQRQEVLCL 396 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + DI ++K++ E + D LT +PNRQ F +L T L + ++L V+ ID Sbjct: 397 V--VRDIRDRKQAEEELQYQLLHDPLTNLPNRQLFKQQLATALAHAKRHEHL-MAVIFID 453 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 ID + IN+ LG ++GD VL S +R+ ++ D++ R + F ++L N+ Sbjct: 454 IDSFTHINNTLGHSLGDKVLQSFAKRLSSCIRAGDMVNRWGSDEFVVLLPQIKNTEDTVK 513 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + + P+ L + + + SIG A + + +LKNA+ A+Y K +G N+ Sbjct: 514 LAQRIFEILQRPLILGKHRLQIKCSIGIAIYPQDGDNAEGLLKNADTALYRTKEQGKNYY 573 Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + + + ++ L A+E + +L Y P + +IVG+EAL++W++P +G Sbjct: 574 QFYSPHLTAEAEILMRLESLLHQALEKKQFFLEYQPQLEYKTGKIVGMEALLRWENPAFG 633 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 I +F+ +A + +I ++ ++L+ +SW+ PPI + +N+++K+ L Sbjct: 634 VIMPQKFLPLAAKTNLILHLSKWVLKTACEQNLSWQKDNL-PPIPVTVNLSAKEFQQPHL 692 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + +++ +T P ++L +E + N +R L L+ +G+ + LDDFG S L Sbjct: 693 ATVVASILDETGLDPQWLELEITELTLRQNLNLARKTLQDLQNLGVRIALDDFGCGFSSL 752 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 YL F T+K + + ++ +I+ + K ++A+ + +K L Sbjct: 753 GYLKQFSFRTLKLHQDFVRDLRGTSEELGLISAILAIGKGFNMRVVAEGVETSEQLKILE 812 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955 + C IQ + PL +LL + Sbjct: 813 DLDCREIQGYWFSHPLPTKEATELLSK 839 >gi|152984740|ref|YP_001351543.1| hypothetical protein PSPA7_6232 [Pseudomonas aeruginosa PA7] gi|150959898|gb|ABR81923.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 951 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 134/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T + + + + + + + + + D + + + I G Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L + ++R I + G+ Q E + + +++ + Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + NG+ +G D++ ++ E + D LTG+ NR+ F +RL + ++ Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ID+D++K +ND LG V D +L + RR+ + LARL+G+ F I+L Sbjct: 556 G-ELALLLIDLDRFKLLNDSLGHEVADQLLREMARRLRRTAPEANTLARLAGDEFAILLD 614 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ A + + P+++L E+ + AS+G + ++ S ++ A LAM Sbjct: 615 GGTGAAALSRLAERLLAQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK GGN + FR + S R+ ++ L A+E +L + Y P + L EA Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLESRLRKAIEEGQLDVHYQPKLCLASGRPDSAEA 734 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G I + F+ +AEE +I I F+L R W + + + +N+ Sbjct: 735 LVRWHHPEDGMIPPATFVGLAEECGLIGEIGEFVLRRACLQAAEWNARG--LSVRVSVNL 792 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L E +++ ++ + ++++L +ES + + +LR++G+ L++ Sbjct: 793 SVHQLRQGDLLEVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSI 852 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P D +K + S + T+ AI+R+II MA +++ ++A+ + Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNGEDAAIIRAIIAMAHSLDLKVVAEGV 912 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD +Q + PL +++ + L++ Sbjct: 913 ETTEQRDFLVAQRCDELQGYLIGRPLPAHAVEEGLRQ 949 Score = 120 bits (300), Expect = 2e-24, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 3/148 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 G SQ + R ++A+ S +WDWD+ RV + + I +G G Sbjct: 260 ARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-HLEAIFS-DAGDGPG 317 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSN 506 R + IH D R L + R + E+RVR + + W+ R R M + Sbjct: 318 DYRRLIENIHPGDLPRIRRALAEHLKGRSELYRVEYRVRGREGGWRWLEDRGRAMARDPR 377 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534 G + R +G +DI+ +K+ E A Sbjct: 378 GRVTRMLGTRSDISARKRLEEQQQLAAT 405 >gi|95929024|ref|ZP_01311769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95134925|gb|EAT16579.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 774 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 162/758 (21%), Positives = 337/758 (44%), Gaps = 30/758 (3%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL----I 266 ++ R + + + + ++ I + + + + +L I + + S+L + Sbjct: 28 LITRVRWQLISAIVVFCLVAEIML-------VWSQSTFDLSILQYALLLGTLSTLNLYNL 80 Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326 I+ + YL R+ I + +L + + + L + + Sbjct: 81 IYHYYYLKIARFAFIDHLHILLDIFVVTVLIHFTGGGNSW---LWPLYLVTTIEAAFLLE 137 Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL----I 382 + G L AW LI + L + + L L V L I Sbjct: 138 NRRDVLGIGALNGLFYAWALIAGHYNLLPYIYQPLDGTPALSETFLLLLWLWVTLLNTAI 197 Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 F A + + R + + D++ + +IL + Sbjct: 198 AFICTFLTHALRRKTAEASTLARRLGNFLNHANDLIIQFRPDGTIDYANQASRSILNIDP 257 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRP 501 S I I DR ++ + + E +R +D Q + + Sbjct: 258 DSNEINIS---SLIDPTDRPRWQRQV-LLLENGTSFPATELLMRTNSDQQAIILDSNVTL 313 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + ++G + GI DIT ++++ + D LTG+ +R +F++R + ++ Sbjct: 314 LEENDGQWTLW-GIFRDITARRQAEARLDQLTNFDQLTGLAHRSNFMERAEQVTLMAKR- 371 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + ++I+ID++K IND LG A+GD+VL ++++R+ ++ D++ RL+G+ F I+L Sbjct: 372 ERKNTAFLIINIDRFKLINDALGSAIGDEVLKAVSQRLLNQVREVDVVGRLNGDEFVIML 431 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 ++ ++ + + A+ + +++ I + E+ +T S G A + T E+LK AE+A+ Sbjct: 432 VNVESADIVHNLAVKITQALTPMIAINSHELFLTTSTGIALYPQDGDTPEELLKQAEIAL 491 Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 K G N ++ F ++ R+ + L LA++ + L Y P + + +I +E Sbjct: 492 LSVKSTGRNGIQFFTDQIDLNQNSRLRLLNGLHLALQQQQFVLHYQPKVNIHTGQITSVE 551 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W+HP+ G + +EF+ +AEE +I I ++LE R + W+ Q PPI + +N Sbjct: 552 ALIRWNHPEMGWVMPTEFIPLAEESGLIGIIGRWVLEEACRQCLIWQQQGL-PPIRMAVN 610 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 + L L + + ++ KT + +++ +E+V+M NPE + +L ++K+G+ + Sbjct: 611 FSGHQLQQESLLKSITDVLKKTGLAAQWLEVEITETVIMQNPEVTINILQAIQKLGVHIA 670 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P +T+K + + + ++ AI+ +I+ M ++ I+A+ Sbjct: 671 IDDFGTGYSSLAYLKRFPVNTLKIDRAFVRDIEQSDTDAAIVGAILKMGATLKLNIVAEG 730 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + K L + C IQ + + I++++++ Sbjct: 731 VETHGQRKFLEQHNCHEIQGFLYSPAVPPERIVEMVRQ 768 >gi|307304385|ref|ZP_07584136.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sinorhizobium meliloti BL225C] gi|306902587|gb|EFN33181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sinorhizobium meliloti BL225C] Length = 1071 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 127/581 (21%), Positives = 248/581 (42%), Gaps = 32/581 (5%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + ++ S + + D V D + +L + ++ Sbjct: 509 AKRASDEISRAQRHAEAAADQLSSVLESTMDSVMLLDADWRVRYLNENARKLLQVGDEAL 568 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 R + + +F + R + ++ W+ P + Sbjct: 569 G---RVFWKLFPEEEEGSFAKHCREVMDRRVRSFFEDH--LSSLG--RWVEANASPTRD- 620 Query: 506 NGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 DITE++++ E + A D LTG+ NR F + L+ S Sbjct: 621 -----GISIFCRDITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNES 675 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ R V+ +D+D +K +ND LG GD +L ++ R+ + ++ + +ARL G+ F Sbjct: 676 ---NHARMAVLCLDLDGFKAVNDTLGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFA 732 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II + + A + +++ P ++ V SIG A ++ E++K A+ Sbjct: 733 IIQPLTESRDEAFRLAQRLIDTLSEPFSIEGASANVGTSIGIAFAPEDGTSADELIKAAD 792 Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +A+Y AK G + F + + +K + A+ E L Y P++ L + Sbjct: 793 IALYSAKSSGRGTYKLFDVAMHAQLQAHQQMKITMRDALAKGEFELHYQPLVSLESRCVS 852 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 EAL++W HP+ G I+ SEF+ IAEE +I I ++L R W ++ + + Sbjct: 853 CCEALLRWRHPERGMIAPSEFIPIAEETGLIVPIGEWILGEACRQAARWPER-----VSV 907 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L + +S T P+R++L +E+V++ E + LL LR++G+ Sbjct: 908 AVNLSPVQFKHRNLVRAVAKALSATRLDPARLQLEITETVLLDESEHNLELLQDLRRLGV 967 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914 + +DDFGT S L YL PFD +K + + + + AI++++ + +++ T Sbjct: 968 KIAMDDFGTGYSSLGYLRSFPFDKIKVDQAFVRDLPHGKESLAIVKAVAGLGQSLGMTTS 1027 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + E + + G + +Q + PL I KL+ Sbjct: 1028 VEGVETEDQLAVVDSEGFNEVQGYLFSRPLPAAEISKLIAA 1068 Score = 105 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 4/152 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + V++ + + + R + ++W D D G Sbjct: 248 YGVLEDIDERRRAADDLRESEARFRAIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEA 307 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G W+ IH +DR + + ++ E+R+R AD + W+I +P Sbjct: 308 EALG--FGWVDVIHPDDRQAVQETFFRATAGK-EPVRSEYRLRRADGSWAWVIDVGQPRF 364 Query: 504 NSNGDILRYIGIANDITEQKKSL-EGILCNAF 534 ++NG L Y+G DITE++ + AF Sbjct: 365 SANGSFLGYVGSVLDITERRAAEIAQQEAQAF 396 Score = 88.1 bits (217), Expect = 7e-15, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 3/149 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I + + + + E V + W D + + P + + GL Sbjct: 120 FVVVTIVDITNLRRTEETLRASEEHYRSLVDLHPQVPWTADTAGEVLEVGPRWSELTGLG 179 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G W +H D + + E+R+ + W R Sbjct: 180 EKETLGS--GWAKAVHPQDAGALQEEWRRSLA-SGAPFDCEYRLLTKTGDYRWFRARAAA 236 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++G I+R+ G+ DI E++++ + + Sbjct: 237 KRDADGKIVRWYGVLEDIDERRRAADDLR 265 Score = 72.3 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 103/320 (32%), Gaps = 34/320 (10%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 QP + + I A Q + S D V D+ Sbjct: 361 QPRFSANGSFLGYVGSVLDITERRAAEIAQQEAQA---FIRSIFDSSPDCVRVLDMEGRP 417 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + I GL G+ + W +D D +S + R E VR Sbjct: 418 LLMNEAGRRIFGLNEGAPV-TGQTWDSIGRASDADKVEAAWESVRRGKTARF--EISVRD 474 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 A + M + P+++ +G R + I DIT+ K++ + I ++ Sbjct: 475 AGGEERCMDVISAPITDHHGKPFRILSIWRDITDAKRASDEISRAQRH--------AEAA 526 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGI--AVGDDVLVSLTRRIGELLK 604 D+L+++L ++ +VM++D D + + +N+ VGD+ L + ++ + Sbjct: 527 ADQLSSVL------ESTMDSVMLLDADWRVRYLNENARKLLQVGDEALGRVFWKLFPEEE 580 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 F + ++ F S+ + SI T Sbjct: 581 EGS---------FAKHCREVMDR-RVRSFFEDHLSSLGRWVEANASPTRDGISIFCRDIT 630 Query: 665 SSKITSSE-MLKNAELAMYH 683 + + +L ++A Sbjct: 631 ERRRAEEDTLLAQKQMAHMA 650 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 5/136 (3%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + + G + V D V +LG + G + I ++ Sbjct: 12 RSHDLFQRLMDGIAEPVIIKDDASRFVFINDAACDLLGKDRNQLIGRTDHD---ILPGEQ 68 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDI 519 + LD V + E ++ D ++ + R +S G + DI Sbjct: 69 ADRIVSLDRIVLSTSEGHELEEQITTPDGTQRTLLTKKRCVSIPAGSTQEKFVVVTIVDI 128 Query: 520 TEQKKSLEGILCNAFQ 535 T +++ E + + Sbjct: 129 TNLRRTEETLRASEEH 144 >gi|186470691|ref|YP_001862009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] gi|184197000|gb|ACC74963.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] Length = 918 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 132/569 (23%), Positives = 246/569 (43%), Gaps = 22/569 (3%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWD---WDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + +S A+ S + V D I G ++ Sbjct: 349 AHEHAKESLRIRSRALDASRNAVIISRKIDGNSTITYVNAAFERITGRSATEAID--AEL 406 Query: 453 LPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 I + D + R + + R + R D +W+ + + P+ + Sbjct: 407 WNLIGCDISTPDARSVRMAMRAECEGARL-----LQCRKPDGSIYWIDLHVAPVLDEQDR 461 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 ++ + +D++E+ + E + A +D LT +PNR L + + + N + + Sbjct: 462 PTHFVTVFSDVSERVRYQEQLRIQAHEDALTRLPNRLGLKATLADMFGRAVAEGN-KLAL 520 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + +D+D +K++ND LG GD VL + RR+ + +I+ R +G+ F L + Sbjct: 521 VFLDLDNFKEVNDTLGHTAGDQVLCEVARRLSGAVSRDEIVVRYAGDEFVAALYGRGDID 580 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 + A AM++++ + + R I AS+G A + +L+ A+ AMY AK G Sbjct: 581 RFMAAATAMKETLTHALTVDNRLIVPQASVGVAVFPDHTQDPDTLLQYADAAMYRAKSAG 640 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N + F D + + L AV + L Y P + + G EAL++W Sbjct: 641 PNSILLFNHDIAIQDNRRATLAQALRHAVASEAFSLAYQPRVNPATGKASGFEALVRWHD 700 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G+IS S F+ IAEE +I I ++ E+ R +W + P I + +N++ Sbjct: 701 PEHGDISPSLFVPIAEETGLIVQIGQWVFEQACRQTRTW-AASLHPDIVVSVNVSPVQFE 759 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 ++L + + + +T S ++L +E V+M S L LR++G+S+ +DDFGT Sbjct: 760 RSDLPAMIASTLERTGVSARNVELEITEGVLM--APGSLATLRALREMGLSIAIDDFGTG 817 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L Y+ D +K + S + G + I+R+++ M + + ++A+ + + Sbjct: 818 YSSLGYIRSFLADRLKLDMSFVQGIGRSHADEVIVRAVLAMGRTLGMRVVAEGVETLGQL 877 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L GCD +Q A P+ N L Sbjct: 878 EFLIDNGCDEVQGYWFARPMDANWAHAYL 906 >gi|237745833|ref|ZP_04576313.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] gi|229377184|gb|EEO27275.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] Length = 969 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 145/584 (24%), Positives = 254/584 (43%), Gaps = 16/584 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 I ++ +QH + + + D++ D + + Sbjct: 389 IFFILRHRHMQHQTERLKMGLKQKALRQHYDYLSKFANDVIILMDGTGTVIEVNDRSEKM 448 Query: 438 LGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G + G IR +D F R L +E + A+ + Sbjct: 449 FGKVRSELIGKNIRTVFDL--KDDFA-FEEKWGELQQER--SLIFEAYGQHANGSIFPVE 503 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 I R + + G L I DI+E+KK+ E + +A D +TG+ NR+ F +RL Sbjct: 504 ISSRVI-EAEGR-LFIQFIIRDISEKKKAEETVWRHANFDQITGLANRRMFSERLFFETR 561 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + +M +D+D +K +ND LG GD +L R+ ++ D +ARL G+ Sbjct: 562 KAQRT-GASVALMFLDLDHFKDVNDTLGHGAGDTLLKEAGDRLTRCVRETDTVARLGGDE 620 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +IL + + A + ++ P L + + ++ASIG + + +++KN Sbjct: 621 FTVILTDLADFRDVERVAQNILDELSEPFTLEGQPVHISASIGITFFPEDAADTHDLMKN 680 Query: 677 AELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK GGN F S R+ + DL A+EN++ V+ PI+ L E Sbjct: 681 ADQAMYAAKSMGGNRYHYFTQSMQEAVQQRMHMINDLHGALENNQFETVFQPIVDLKTGE 740 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I EALI+W HP G I+ + F+ +AE+ +I+A ++ AR R +P Sbjct: 741 ICRAEALIRWHHPVHGVINPASFVPLAEDTGLIQAFGDWVFLEAARQAARCRK--YIPGF 798 Query: 795 FILINIASKDLLDNELCEGM-QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + +NI+ + + + A + P I + +E +++ E L LR Sbjct: 799 QVSVNISPVQFKNGGINTDVWFAHLKSLELPPQAIVIEITEGLLLEIDESIADQLLALRD 858 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 G+ + LDDFGT S L+YL + D VK + + TE+ + ++ MA ++ Sbjct: 859 AGMEVALDDFGTGYSSLAYLKKLDIDYVKIDQMFVKNLTITEEDRVLCEAMTLMAHKLDI 918 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + +K L+ GCD +Q +++ P+G +LL+ Sbjct: 919 AVIAEGVETLAQLKMLSSFGCDCVQGYYISGPVGDQEFEELLQA 962 >gi|170702261|ref|ZP_02893162.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia ambifaria IOP40-10] gi|170132837|gb|EDT01264.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia ambifaria IOP40-10] Length = 749 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 128/573 (22%), Positives = 246/573 (42%), Gaps = 23/573 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP------- 448 ++ + E L V + + + + P ++ + G + G Sbjct: 182 IARQLVHSEEHHRLVVNSLNEGILVLSPDGVVIASNPSANRMMRVK-GELVGRRLSSVIL 240 Query: 449 --IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS- 505 +R I ++ + + L Y AD W+ P+ Sbjct: 241 YKLREDGTRIAPDEWPSRLAFTTAA-----PLLDYSVGFGLADGDIIWVRGNAVPIVKPG 295 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNL 564 + +DI +++ + + A +D LTG+ NR+ +R+ + A Sbjct: 296 ETRPESVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGTRDAAAGPA 355 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R ++ ID+ +KK+ND G GD +L S+ R+ L R+ G+ F I++ Sbjct: 356 RVAILFIDLVGFKKVNDTAGHDAGDALLRSVAARLAACAGERHALTRVGGDEFVILVDQC 415 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 ++ +++ A + +IA P + E + SIG + + +++NA+ AMY A Sbjct: 416 DDPDELSTLAREVIDTIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDA 475 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG NH F + I++ L A+ + L L Y P++ VG EAL+ Sbjct: 476 KQRGRNHFTFFTAQLNLRLQRRFAIEQSLRRAISSDALRLAYQPVVDARSGRTVGAEALL 535 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W P+ G +S +EF+ +AE+ +I AI ++LE R WR P + + +N++ Sbjct: 536 RWTSPELGPMSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSP 594 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L E + +++T P ++L +E ++M + + +L L + + +++DD Sbjct: 595 RQF-HEGLVESVDRCLAQTQLDPGALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDD 653 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + Sbjct: 654 FGTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVET 713 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L ++GCD Q PL + L Sbjct: 714 QAQSWFLQQIGCDMQQGYLFGRPLDPTDYARRL 746 >gi|330825013|ref|YP_004388316.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|329310385|gb|AEB84800.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Alicycliphilus denitrificans K601] Length = 1054 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 130/593 (21%), Positives = 248/593 (41%), Gaps = 32/593 (5%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATILGL 440 V+Q + Q + + + V ++VR R I G Sbjct: 467 HLAVVQDIGERKQMEQALSDSEQHLLGILNHMPVGV---NLVRGRAIAFRNDRHVQICGY 523 Query: 441 ASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQ-----YEFRVRAADNQFH 493 + +W + + +R R + R E + + Sbjct: 524 GEQE-APDVDSWWRLVMPDAAERHQAREAWKAACMAARHAADGAIRPVECHITSKAGLLR 582 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + I + +S+ I D ++++++ E + A+ D LTG+PNR+ LDRL Sbjct: 583 TVEISGVMLEDSH------IVTMVDQSQRRQAEEEVRYLAYNDPLTGLPNRRLLLDRLQQ 636 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L +SA L V+++D+D +K IN+ G +GD +L ++ R+ + D LAR Sbjct: 637 ALAMSARHQ-LCGAVLMLDLDNFKHINETQGHDMGDRLLHAVALRLRACIPEDDTLARHG 695 Query: 614 GNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREI-TVTASIGFASWTSSK 667 G+ F ++L + + + + ++ P L E T S+G + Sbjct: 696 GDEFVVVLKDLGASPQEAATRAEAMGLQILDAMREPFALGGGEPRHTTLSVGIVIFQGLH 755 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725 ++ E+LK +++AMY AK G + + F ++ D+ +E E L Y Sbjct: 756 ESADELLKRSDMAMYEAKAAGRDALRFFDPQVQAQMTARVALEADMRSGLEAGEFELFYQ 815 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + I G EAL++W HP G I SEF+ +AE+ +I + ++L + W Sbjct: 816 PKMVH--GRITGAEALLRWKHPVKGYIPPSEFIPLAEQSGLILRMGQWVLRTACERLALW 873 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + + + +N++ + + + ++ T R++L +E +++ + E + Sbjct: 874 SSHPVLGQLSVAVNVSPRQFHEAGFVPEVLEALAGTGADARRLRLELTEGLLLQDVEDTV 933 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSII 903 + +LR G+ +LDDFGT S L+YL +P +K + S + + AI R+I+ Sbjct: 934 AKMVQLRGYGVGFSLDDFGTGYSSLAYLKRLPLHELKIDQSFVRDVLTDPNDAAIARTIV 993 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + ++ ++A+ + E L R GC Q ++ PL + L+ E Sbjct: 994 ALGTSLGLQVVAEGVETEAQRVFLERSGCHAWQGYLLSRPLPGLAFEDLVLEH 1046 Score = 80.8 bits (198), Expect = 1e-12, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 7/156 (4%) Query: 376 VLIVILIGFTVIQHVLATGYFSQG---IFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTT 431 L+ ++ V++ V A G Q + ER + + D+ DR V Sbjct: 330 ALLTAMVSMLVLRRVRALGDVQQAGVALRESEERFRAVFSQAAVGMAQVDLHSDRMVRVN 389 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 + +LG + + D D ++ + + E R D + Sbjct: 390 RKLCDLLGYTEAEL--QQLRFQDISDPRDLDADLAFMERMRSGKISEFRMEKRYCRKDGE 447 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 W + + + G ++ + DI E+K+ + Sbjct: 448 IVWAELMVSRLCLE-GRPESHLAVVQDIGERKQMEQ 482 >gi|73543375|gb|AAZ77792.1| PA5017-like protein [Pseudomonas aeruginosa] Length = 899 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 149/574 (25%), Positives = 266/574 (46%), Gaps = 12/574 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 I + + + + S AV S D P +I Sbjct: 319 IAFAGELADQYAQVLMNHERRNVSSALHLFQRAVEQSASAFLLIDRDGVVEYVNPSFTSI 378 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 ++ + + LP + + S + + Q EFR R +++ +W + Sbjct: 379 TQYSADEVRNRRLSELPAL--ENLSELLFDARSALTQQN-SWQGEFRSRRKNHEPYWGQL 435 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + + + G++ YIGI DIT+ K + + I A++DNLTG+ NR F+ L L+ Sbjct: 436 SLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANRHYFIGALEERLES 495 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 S + +++++DID +K+IND LG GD +LVSL RR+ L LAR + N F Sbjct: 496 S---GDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDGATLARFASNEF 552 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++L + K A + + P+ + + I +T SIG AS ++K A Sbjct: 553 AVLL-DDTAVEKGESIAAQVLHMLDKPLFVDNQLINITGSIGLASAPQHGCDPQTLMKYA 611 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEI 735 LA++ AK G + V+ F + + + +L A+ +EL + Y P + L ++ Sbjct: 612 GLALHKAKANGKHQVQVFTEALTAEASYKLFVESNLRRALAQNELAVHYQPKLCLRSGQL 671 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +GLEAL++W HP+ G I F+ +AEE +I I +++ R + + Sbjct: 672 LGLEALLRWQHPEKGMIRPDRFISVAEETGLIVPIGKWVIREACRQARELAEAGLGE-LQ 730 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 I IN++ K D +L + A++ + S+++L +ES+++ + +R L RL+ +G Sbjct: 731 IAINLSPKQFTDPDLVGSIAAILHEENIPASQLELELTESLLLDATDDTRQQLERLKSLG 790 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 ++L +DDFGT S LSYL P D +K + S + ++ + I ++I MA N++ + Sbjct: 791 LTLAMDDFGTGYSSLSYLKKFPIDVIKIDRSFIKDIPDSQDDMEITSAVIAMAHNLKLKV 850 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 +A+ + + L R CD Q P+ + Sbjct: 851 VAEGVESAEQLAFLRRNRCDIGQGYLFDRPIPSD 884 >gi|307720562|ref|YP_003891702.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas autotrophica DSM 16294] gi|306978655|gb|ADN08690.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas autotrophica DSM 16294] Length = 936 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 135/507 (26%), Positives = 245/507 (48%), Gaps = 13/507 (2%) Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D + + R +LQ E + + Q + P+ N + + +GI DI Sbjct: 429 DAKKYMNDDQEVIKERIAKLQIEEKQTDENGQTIILSTSKVPLVGINDENIGILGIYEDI 488 Query: 520 TEQKKSLEGI-------LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 T+ K + I A D LT +PNR F DRL +D + + ++ ID Sbjct: 489 TDTKNMQQQIVQQSKKLHFQATHDELTLLPNRALFQDRLALSIDNAKRNSQ-DCALLFID 547 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K+IND LG +GD VL + +R + ++ D LAR+ G+ F II+ N ++ Sbjct: 548 LDEFKEINDSLGHHMGDKVLKIIAQRFKQAIREKDTLARIGGDEFVIIVDDYKNIEALST 607 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 + + I++ E + ++AS+G + + + +LK A+ AMY AK G + Sbjct: 608 LTQKILDTTNKGIDIGEHVLYISASVGISVYPKDSTDAQNLLKCADAAMYKAKDEGKGNY 667 Query: 693 ESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + R+ ++ L A++N + + P I +EI+GLEAL++W Sbjct: 668 QFYSQEMTQKAMKRISMQSKLRNAIKNEVFDVYFQPQINAQTKEIIGLEALVRWIDENGN 727 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 I EF+ AEE MI ++ ++++ ++ WR++ + +N+A K L ++ Sbjct: 728 MIYPDEFIPFAEETGMIVELDRIVMKKALAQVMQWRNENIFTG-SLSLNLAMKQLQKDDF 786 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + LIS + P +I+L +ES +M PE S L RL+++GI +++DDFGT S L Sbjct: 787 ELSISNLISSSKCPPEKIELEITESGLMQKPEESIAKLNRLKELGIKISIDDFGTGYSSL 846 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SY+ +P +K + S + + I+I+++II +A ++ +A+ + ++ + Sbjct: 847 SYIKKLPISKIKIDKSFVVELPDNKDDISIVKAIIALASSLGLKTLAEGVETAQQLEFML 906 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955 GC IQ + A P+ + LK Sbjct: 907 ENGCHNIQGYYFAKPMSIEDTTRFLKN 933 Score = 58.4 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 42/352 (11%), Positives = 113/352 (32%), Gaps = 16/352 (4%) Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245 ++F + + + + L + T + NR + I L I ++ + Sbjct: 32 HTFIEFFSVFVSFSITLVTYYTYSFTKNRYLLFIGLGYFWIGFLDLFHIQTYPGMQIFMI 91 Query: 246 PSGELLIWRACSEIALSSSLII---FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 S + L + +++ F+ N + + T I +A + +S Y Sbjct: 92 DSPNNTLTFWVLTRTLGAVILLTAPFMRYRTFRNITVSSIFGATALIITYLATMHPLSLY 151 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362 + +I ++ +Y K + + + + + ++ Sbjct: 152 IQGQGLTDLKINFEYFIIAILAVTLYINKKHNQ--EFSKGIYSAVMLSIVFNILSELSFT 209 Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + + L ++ L + ++Q ++ T + F+ ++ + D Sbjct: 210 LYNDVYGFLNLVGHILKFLSFWVLLQAIIKTSL--KEPFTLMQKGASTYDAIPVAAAVVD 267 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQ 480 + L LA + G + H + + + + ++ + Sbjct: 268 ELGMVRQINHAACEFLSLAEIDIIGKSNH--ELFHPKNSQKSQCSICQAIEQKKYIEHYE 325 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 E + ++ + + P+S+S +I + I+ DITE+K + Sbjct: 326 SE---DTSSGKY--IEFSLSPISSSEKNIQGVVQISIDITERKNLQINVQNQ 372 >gi|296392305|ref|ZP_06881780.1| hypothetical protein PaerPAb_29317 [Pseudomonas aeruginosa PAb1] Length = 951 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 133/577 (23%), Positives = 267/577 (46%), Gaps = 10/577 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T + + + + + + + + + D + + + I G Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L + ++R I + G+ Q E + + +++ + Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + NG+ +G D++ ++ E + D LTG+ NR+ F +RL + ++ Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ID+D++K +ND LG V D +L + +R+ + LARL+G+ F I+L Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ A + + P+++L E+ + AS+G + ++ S ++ A LAM Sbjct: 615 GGTGAAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK GGN + FR + S R+ ++ L AVE +L + Y P + L +EA Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASGRPDSVEA 734 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G I S F+ +AEE +I I F+L R W + + + +N+ Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L + +++ ++ + +++L +ES + + +LR++G+ L++ Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAVQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P D +K + S + + AI+R+II MA +++ ++A+ + Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD +Q + PL +++ + L++ Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949 Score = 117 bits (294), Expect = 9e-24, Method: Composition-based stats. Identities = 63/400 (15%), Positives = 125/400 (31%), Gaps = 30/400 (7%) Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222 + + + + L+ + L + L + SS L+ + Sbjct: 8 LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67 Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 + V+L + + + + WR +S + F + A + Sbjct: 68 LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326 + G+ AIL Y + A + + + Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187 Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376 I+ ++G A L A+ ++L ++ Q LV + Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247 Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++ G SQ + R ++A+ S +WDW++ RV + + Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWNLESGRVQHS-YLE 306 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + +G R + IH D R L + R + E+RVR + + W+ Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R R M + G + R +G +DI+ +K+ E A Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405 >gi|296391862|ref|ZP_06881337.1| putative sensory box protein [Pseudomonas aeruginosa PAb1] Length = 899 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + +N + Q + + ++ H + +F Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 AV S D P +I ++ + + LP + + Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S + + Q EFR R +++ +W + + + + G++ YIGI DIT+ K + + Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A++DNLTG+ NR F+ L L+ S + +++++DID +K+IND LG Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LVSL RR+ L LAR + N F ++L + K A + + P+ + Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 + I +T SIG AS ++K A LA++ AK G + V+ F + + Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +L A+ +EL + Y P + L +++GLEAL++W HP+ G I F+ +AEE Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I +++ R + + I IN++ K D +L + A++ + Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S+++L +ES+++ + +R L RL+ +G++L +DDFGT S LSYL P D +K + Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + ++ + I ++I MA N++ ++A+ + + L R CD Q P Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880 Query: 944 LGFN 947 + + Sbjct: 881 IPSD 884 >gi|229033982|ref|ZP_04188934.1| Sensory box protein [Bacillus cereus AH1271] gi|228728335|gb|EEL79359.1| Sensory box protein [Bacillus cereus AH1271] Length = 450 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 135/449 (30%), Positives = 235/449 (52%), Gaps = 6/449 (1%) Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 GIA DIT + + + AF D LTG+PNR+ F L IL+ + T+ N VM + Sbjct: 1 MFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTNAN-DVAVMFL 59 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++KKIND LG VGD +L+ + +R+ L+ D++AR G+ F I+L + A Sbjct: 60 DLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAA 119 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + + P + E E+++T SIG A + +E++KNA++AMY AK G N Sbjct: 120 FIAEQILTILNKPFFIKEEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNR 179 Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 F +S+ ++ +L A++ +E +L Y P + ++I+G EALI+W HPK Sbjct: 180 FVFFSKEMSIAQSEIQFLEGELAKALQQNEFFLEYQPQVNTTTKQIIGFEALIRWKHPKL 239 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S ++F+ +AEE I + ++L + W +Q + + +N++ Sbjct: 240 GIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHAN 298 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S Sbjct: 299 LIPTISKVLEETELKPEALDIEITESIAINQNQSVISKLEQLQNLGIQISIDDFGTGYSS 358 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL P +T+K + G + AI+ SII ++K + +IA+ + E K L Sbjct: 359 LAYLTKYPINTLKIAREFICGISNSPLEEAIISSIITLSKELHLEVIAEGVETEEQWKFL 418 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956 CD+IQ ++ P+ + +LL ++ Sbjct: 419 HEQNCDHIQGFFISKPVSSKDVWRLLHKK 447 >gi|146337845|ref|YP_001202893.1| hypothetical protein BRADO0726 [Bradyrhizobium sp. ORS278] gi|146190651|emb|CAL74653.1| Conserved hypothetical protein; putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains [Bradyrhizobium sp. ORS278] Length = 717 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 140/563 (24%), Positives = 246/563 (43%), Gaps = 20/563 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457 + E L G+ + RV A G + + L Sbjct: 155 ELKQREESFRLLFDGNPVPMIVCARDDGRVLGVNEAAAQHYGYSRAAFEQLSIRNLQAYE 214 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + + R R AD + I R + +++ + Sbjct: 215 SE----TPWASEQSGEEQAARTWKHVR---ADGALIDLAIYSRHLVHNDQPA--VLLALM 265 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+K++ + A D LTG+P+R ++ L + + V+V+ +D +K Sbjct: 266 DITERKRAEARLAFLAQHDALTGLPSRNLLRQQIDDKLIQMRR-GSEKMAVLVLGLDNFK 324 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 IND LG A+GD +L + +R+ +L+ DI+ARL+ + F ++ A + Sbjct: 325 SINDTLGHAIGDRLLRGVGKRLRSILRQEDIVARLNSDEFAVVQGGLARPEDAAQLCRRL 384 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696 +++A P + +T+ A+IG A + + ++LKNA++A+ AK F Sbjct: 385 LQALADPYLIDGSSVTIGATIGIAMAPNDGDDAEKLLKNADMALSRAKTETRGTFSYFET 444 Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + R I+ +L A++ L Y P+I L I G EAL++W HP+ G I S Sbjct: 445 GMDARAQSRRKIEIELRDAIQRDLLQPHYQPLIDLSTGRITGFEALVRWPHPERGMIPPS 504 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ IAEE +I + ML + D W D+ + + +N++ + + Sbjct: 505 EFIPIAEETGLISGLGRSMLRQACSDAAKWPDE-----VRVAVNMSPLQFRVGNVLSLVM 559 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ SR++L +E++V+ + L LR +G+ +++DDFGT S LSYL Sbjct: 560 DALKQSGLPASRLELEITETLVLEKSGQVLATLHALRALGVRISMDDFGTGYSSLSYLRS 619 Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + R AI+RSI+ + K + TI A+ + E +++ L GC Sbjct: 620 FPFDKIKVDQSFIRDLAANREAQAIVRSIVSLGKGLGVTITAEGVETEAELRCLRAEGCH 679 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 Q + P I+ LL + Sbjct: 680 EAQGYLFSRPRPNAEIVGLLLAQ 702 >gi|152989344|ref|YP_001351073.1| hypothetical protein PSPA7_5754 [Pseudomonas aeruginosa PA7] gi|150964502|gb|ABR86527.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 899 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + +N + Q + + ++ H + +F Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 AV S D P +I ++ + + LP + + Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S + + Q EFR R +++ +W + + + + G++ YIGI DIT+ K + + Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A++DNLTG+ NR F+ L L+ S + +++++DID +K+IND LG Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LVSL RR+ L LAR + N F ++L + K A + + P+ + Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 + I +T SIG AS ++K A LA++ AK G + V+ F + + Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +L A+ +EL + Y P + L +++GLEAL++W HP+ G I F+ +AEE Sbjct: 642 FVESNLRRALTQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I +++ R + + I IN++ K D +L + A++ + Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S+++L +ES+++ + +R L RL+ +G++L +DDFGT S LSYL P D +K + Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + ++ + I ++I MA N++ ++A+ + + L R CD Q P Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880 Query: 944 LGFN 947 + + Sbjct: 881 IPSD 884 >gi|146309385|ref|YP_001189850.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp] gi|145577586|gb|ABP87118.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp] Length = 960 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 151/951 (15%), Positives = 322/951 (33%), Gaps = 39/951 (4%) Query: 24 WMVSPSFAIEPINISSSDRVLDLTS----ITRIYVNQGEDFQVFTAADIDGISRRI--EV 77 + + + + T + + + G G R Sbjct: 15 TCAVTARGGDALPLLQLSNEQLTTPVSIEHSLLLEDPGAQLTASEVLQRIGREGRPVQGT 74 Query: 78 SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFS 137 W L +L+ ++V L + + S Sbjct: 75 PRIGYSRSAWWLAVQLQTPPAERLQ--LIVGQTFLDDLEIWLFADQQPLGPLYSGSLRPF 132 Query: 138 LDRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIYLWEPNFYKDTVNSFTLYRGII 195 +R + + ++ + + + + L + + L G++ Sbjct: 133 NERGEPYPQFLISLPRLGEGPHNLLLRVQSHSAITLPLQLVGAQQGQQLIAHSWLQSGLL 192 Query: 196 IGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRA 255 +G LA+F + Y R L A V Y + L Sbjct: 193 VGALLALALFYLLKYSTLREPQLAYFSLTALCVALYNVSLYNLSGLLWPQWPLLPKWLVN 252 Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315 + + +FL L + + L ++ + ++ + L Sbjct: 253 LTTAGMLIFSSLFLASALRLELGRLRWLRDALFAAVLLVCLGGLAISHAYTYQTLNLLIL 312 Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375 + + + + A + W + + + ++ + AL L Sbjct: 313 CTGLYQLLVMCLGVYQRR-PYAPGYLLCWSAALVLMLLVPLSRVGLIPLPPGFYALYAYL 371 Query: 376 VLIVILIGFTVIQHVLATGYF-----SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + +L+ ++ L + E+ SG+ ++ D + Sbjct: 372 PALSMLLFGALLDKQLERVRRVLLSSQAQAIDNLEQYQALFRHSGEGIFRCDRDGRLLEA 431 Query: 431 TPDIATILG--LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 P +A +LG + + G L + L + + G + E ++ Sbjct: 432 NPSLARLLGGDTPATQLVGLPLQRLLG------EAQWRELLQELDTQAGTVSCECQLHDL 485 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 + W+ + + + GI D++E++ E + A D LTG+ NR+ Sbjct: 486 AQRPLWVYLSLHLRPQRD----CIEGIVVDLSERRALEERLQQLAAHDALTGLLNRRELE 541 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 L+ L +A ++ + +D++K++ND+ G + GD +L L ++G L Sbjct: 542 RLLSETLGGTAKRRFSH--LLHLSLDRFKQVNDLCGHSAGDQLLRQLATQLGHQLPRHAE 599 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 LAR+ G+ F ++L ++ + R R + SIG + S Sbjct: 600 LARVGGDEFAVLLREVDDEAALKQAEALRRAVEQFVFTWQGRPFRLHTSIGLLALGSGVR 659 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVY 724 L A A AKH+G N V F ++ L A E L + Sbjct: 660 DWETALTWASSASQLAKHQGRNRVCQFNPEDGALLEHQRQLQWITRLREACERGHFELFF 719 Query: 725 HPIIRLMDEEI-VGLEALIQWDHP-KWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 P+ L + E L+++ P +S ++F+ A + AI+ ++++ + + Sbjct: 720 QPVQALQSAASGLHYEVLLRYRDPASGEWVSPAQFLDAAARYDFLGAIDRWVIQHLCAWL 779 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + + +N+++ LLD+ + ++ +S+ P ++ + +E V +G Sbjct: 780 AANPRHLAQLA-QVNVNLSASSLLDSAFHQLLEQELSRHQLPPGKLCIEVTEMVALGELG 838 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 S + LR G+ + LDDFG+ + +YL ++P D +K +GS ++G A++ Sbjct: 839 VSAQWIDELRSKGLKVALDDFGSGFASYAYLRHLPLDILKIDGSFISGIESDPINQAMVG 898 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 S+ +A + +A+ + + + L R+G DY Q V P + Sbjct: 899 SMRQIASQLGLLTVAEFVETQASLDCLRRLGIDYAQGYFVGRPQPLRQLAD 949 >gi|326408241|gb|ADZ65306.1| diguanylate cyclase GGDEF domain-containing protein [Brucella melitensis M28] Length = 672 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 81 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 140 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 141 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 197 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 198 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 257 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 258 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 315 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 316 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 374 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 375 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 434 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 435 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 492 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 493 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 549 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 550 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 609 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 610 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 657 >gi|218894116|ref|YP_002442985.1| putative sensory box protein [Pseudomonas aeruginosa LESB58] gi|218774344|emb|CAW30161.1| putative sensory box protein [Pseudomonas aeruginosa LESB58] Length = 899 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + +N + Q + + ++ H + +F Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 AV S D P +I ++ + + LP + + Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S + + Q EFR R +++ +W + + + + G++ YIGI DIT+ K + + Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A++DNLTG+ NR F+ L L+ S + +++++DID +K+IND LG Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LVSL RR+ L LAR + N F ++L + K A + + P+ + Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 + I +T SIG AS ++K A LA++ AK G + V+ F + + Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +L A+ +EL + Y P + L +++GLEAL++W HP+ G I F+ +AEE Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I +++ R + + I IN++ K D +L + A++ + Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S+++L +ES+++ + +R L RL+ +G++L +DDFGT S LSYL P D +K + Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + ++ + I ++I MA N++ ++A+ + + L R CD Q P Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880 Query: 944 LGFN 947 + + Sbjct: 881 IPSD 884 >gi|319762933|ref|YP_004126870.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317117494|gb|ADU99982.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 1058 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 130/593 (21%), Positives = 248/593 (41%), Gaps = 32/593 (5%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATILGL 440 V+Q + Q + + + V ++VR R I G Sbjct: 467 HLAVVQDIGERKQMEQALSDSEQHLLGILNHMPVGV---NLVRGRAIAFRNDRHVQICGY 523 Query: 441 ASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQ-----YEFRVRAADNQFH 493 + +W + + +R R + R E + + Sbjct: 524 GEQE-APDVDSWWRLVMPDAAERHQAREAWKAACMAARHAADGAIRPVECHITSKAGLLR 582 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + I + +S+ I D ++++++ E + A+ D LTG+PNR+ LDRL Sbjct: 583 TVEISGVMLEDSH------IVTMVDQSQRRQAEEEVRYLAYNDPLTGLPNRRLLLDRLQQ 636 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L +SA L V+++D+D +K IN+ G +GD +L ++ R+ + D LAR Sbjct: 637 ALAMSARHQ-LCGAVLMLDLDNFKHINETQGHDMGDRLLHAVALRLRACIPEDDTLARHG 695 Query: 614 GNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREI-TVTASIGFASWTSSK 667 G+ F ++L + + + + ++ P L E T S+G + Sbjct: 696 GDEFVVVLKDLGASPQEAATRAEAMGLQILDAMREPFALGGGEPRHTTLSVGIVIFQGLH 755 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725 ++ E+LK +++AMY AK G + + F ++ D+ +E E L Y Sbjct: 756 ESADELLKRSDMAMYEAKAAGRDALRFFDPQVQAQMTARVALEADMRSGLEAGEFELFYQ 815 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + I G EAL++W HP G I SEF+ +AE+ +I + ++L + W Sbjct: 816 PKMVH--GRITGAEALLRWKHPVKGYIPPSEFIPLAEQSGLILRMGQWVLRTACERLALW 873 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 + + + +N++ + + + ++ T R++L +E +++ + E + Sbjct: 874 SSHPVLGQLSVAVNVSPRQFHEAGFVPEVLEALAGTGADARRLRLELTEGLLLQDVEDTV 933 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSII 903 + +LR G+ +LDDFGT S L+YL +P +K + S + + AI R+I+ Sbjct: 934 AKMVQLRGYGVGFSLDDFGTGYSSLAYLKRLPLHELKIDQSFVRDVLTDPNDAAIARTIV 993 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + ++ ++A+ + E L R GC Q ++ PL + L+ E Sbjct: 994 ALGTSLGLQVVAEGVETEAQRVFLERSGCHAWQGYLLSRPLPGLAFEDLVLEH 1046 Score = 80.8 bits (198), Expect = 1e-12, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 7/156 (4%) Query: 376 VLIVILIGFTVIQHVLATGYFSQG---IFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTT 431 L+ ++ V++ V A G Q + ER + + D+ DR V Sbjct: 330 ALLTAMVSMLVLRRVRALGDVQQAGVALRESEERFRAVFSQAAVGMAQVDLHSDRMVRVN 389 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 + +LG + + D D ++ + + E R D + Sbjct: 390 RKLCDLLGYTEAEL--QQLRFQDISDPRDLDADLAFMERMRSGKISEFRMEKRYCRKDGE 447 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 W + + + G ++ + DI E+K+ + Sbjct: 448 IVWAELMVSRLCLE-GRPESHLAVVQDIGERKQMEQ 482 >gi|170750801|ref|YP_001757061.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] gi|170657323|gb|ACB26378.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] Length = 574 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 133/550 (24%), Positives = 254/550 (46%), Gaps = 26/550 (4%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATIL-GLASGSMHGPIRNWLPYIHIND----RDNFR 465 + + + D V + +L L G L + R Sbjct: 34 LDAARQGLLMIDRAGTVVAASAPARRLLESLTVAPRIGAAALPLLRALRDGSAPARHATL 93 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L + R+ L +E R RA H + + + P+ + G ++ D++ +K + Sbjct: 94 RALRGALARRQPAL-FEVRRRA-----HTVQVELHPL--AEG---GWVVTLEDVSTRKAT 142 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 A D LTG+PNR +RL L+ A +++ID+D++K +ND LG Sbjct: 143 EARADAMARLDPLTGLPNRLLLRERLAAALERLAR-PGEGFALLLIDLDRFKPVNDTLGH 201 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +GD +L ++ R+ ++ D +AR+ G+ F I+ ++ A + I Sbjct: 202 PIGDALLATVADRLRSTVQATDTVARIGGDEFVILQAGIRDAAGTQALARRVVDLIGRTY 261 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 + +T+ AS+G A + + +LKNA+LA+Y AK G F + Sbjct: 262 MVEGHLLTIGASVGVALAPADGTDADRLLKNADLALYRAKLDGRGTYRFFEPEMDARMQA 321 Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 ++ D+ A+ E L Y P ++L ++G EALI+W HP G +S +F+ +AEE Sbjct: 322 RRKLELDMRQALARREFQLHYQPQMQLASGTLIGCEALIRWRHPDRGLVSPLDFIPLAEE 381 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 + +I I +++ + RD ++W D P+ + +N++ + L E + + ++ + Sbjct: 382 IGLIVPIGEWVVRQACRDAVTWPD-----PMSVAVNVSPAQFKSDRLVETIISALAGSGL 436 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 R+++ +E V++ +R+ L RLR++G+ +++DDFGT S LSYL PFD +K Sbjct: 437 PARRLEVEITEGVLLQENDRTLQTLHRLRELGVRVSMDDFGTGYSSLSYLRSFPFDKIKI 496 Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + T AI+R+I + +++ T +A+ + ++ + GC +Q ++ Sbjct: 497 DRSFVKDLTSKPDGEAIIRAIAGLGRSLGMTTVAEGVETSEQMQRIRFEGCTDVQGYLIS 556 Query: 942 SPLGFNSILK 951 P+ + + Sbjct: 557 KPVPAEDLRQ 566 >gi|75763729|ref|ZP_00743402.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488784|gb|EAO52327.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 912 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 161/760 (21%), Positives = 303/760 (39%), Gaps = 30/760 (3%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 I ++ L F + ++L + + F + N S + ++ Sbjct: 165 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 220 Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318 +L+ YL + + + + I L Sbjct: 221 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 280 Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 +I +K + LI + F++ + + + + L L + Sbjct: 281 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 334 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + TV Q S + + ER D + D + + +L Sbjct: 335 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 394 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G S + G D+ + LQ + + W + Sbjct: 395 GKDSAVLIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 451 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I P+ G + DIT K+ + I AF D +T I NR F L + Sbjct: 452 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 510 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G+ F Sbjct: 511 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 569 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II+ ++ ++ + + P + + ++ SIG A + I ++ +L++A+ Sbjct: 570 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 628 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I + +++ Sbjct: 629 IAMYSAKEKGNNAVCMYDEKLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 688 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G IS EF+ IAEE I +I + L++ R + W + + Sbjct: 689 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 747 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 IN+++ + + + + I + + I L +E + M + + + L L+ G+ Sbjct: 748 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 807 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 L++DDFGT S L+YL P DT+K + + I+++II +A + +I Sbjct: 808 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 867 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A+ + + + L R C IQ + + P+ + + L Sbjct: 868 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFIVFLS 907 >gi|300867490|ref|ZP_07112141.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300334484|emb|CBN57309.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 611 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 132/442 (29%), Positives = 232/442 (52%), Gaps = 5/442 (1%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +I E+K E +L A D LTG+PNR F++RL L+ S + V+ +D D++ Sbjct: 164 REIGERKLLEEQLLKMALHDALTGLPNRVLFMERLVQALNCSKEVKGYQFAVLFLDCDRF 223 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG VGD++L++L RR+ + L + LARL G+ F ++++ N A Sbjct: 224 KVINDSLGHPVGDELLIALARRLEKSLHPKNTLARLGGDEFAVLIVDIENITTATQSAER 283 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + +A+P L E+ + ASIG A + +L++A+ AMY AK+ G + F Sbjct: 284 ILQRLALPFQLKRYEVFINASIGIAVGNFNYEQPEHLLRDADTAMYRAKNLGKGQYQIFD 343 Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + ++ DL AV E + Y PI+ L I G EAL++W HP+ G +S Sbjct: 344 PAMHDAALKVLQLENDLRRAVNQQEFIVYYQPIVALNTGRIFGFEALVRWQHPQKGLVSP 403 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEG 813 + F+ AEE +I +I ++L R + W R++ P+ + +N++ + +L E Sbjct: 404 ALFIPAAEETGLINSIGKWVLGEACRQLRLWDREKVADYPLTMSVNLSVRQFAQPDLIEQ 463 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++++T +P +KL +ES +M N + + ++L +LR+ I L++DDFGT S LSYL Sbjct: 464 IDQILTQTQLNPKFLKLEITESAIMENAKSAAVILQKLRERHIQLSIDDFGTGYSSLSYL 523 Query: 874 GYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P D +K + S + K + + +I+ +++ + IA+ I + + +L + Sbjct: 524 HSFPVDNLKIDRSFVQRLDGKAENMGLISAIMSISQALGMNAIAEGIETQEQLAQLRSLN 583 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C + Q + PL + L+ Sbjct: 584 CPFGQGYLFSKPLEATAATNLI 605 >gi|86747317|ref|YP_483813.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gi|86570345|gb|ABD04902.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Rhodopseudomonas palustris HaA2] Length = 743 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 140/564 (24%), Positives = 256/564 (45%), Gaps = 23/564 (4%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 S+ + R A+ + +D R V + A I L + + Sbjct: 181 LRSMSRTLELSNLRLDAALNNFLHGLCMFDGDRKVVVSNARFAGIYSLRPDEIRCGVS-- 238 Query: 453 LPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 L I R+ F R E D +++R +P++ Sbjct: 239 LSAIQSACRERGTFVESWSERRLGRCSDDISEVSSL-QDG--RTILVRCQPVAGG----- 290 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + DITE+ +S + I A D LTG+ NR +F +R+ +V++ Sbjct: 291 GWMTVHEDITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGET-FSVIM 349 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LK 629 +D+D++K +ND LG GD +L ++ R+ ++ D+LARL G+ F ++ +S + Sbjct: 350 LDLDRFKLVNDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYNE 409 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 FA + + PI + ++ ++ S G A S E++KNA+LA+Y AK G Sbjct: 410 AVAFADRIVNCLIDPIEIDGHQLVISTSAGIALAPQHGTDSDELIKNADLALYRAKAAGR 469 Query: 690 NHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N +F + + R ++ +L A+ N E L Y P + ++G EAL++W HP Sbjct: 470 NGYVTFETAMKDRANARQQLEGELRQAILNREFDLYYQPQVEARSGRVIGAEALLRWRHP 529 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G + SEF+ +AEE +I+ + ++L+ A + I W PI + IN++ L Sbjct: 530 RRGFVPPSEFIPVAEETGLIEKLGEWVLKEAAAEAIRWPA-----PIKLAINLSPVQLSR 584 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L + + + + P R+++ +E+V + + + ++ +LR +G+S+ LDDFGT Sbjct: 585 GNLTDTVTQALRLSGLPPERLEVEITENVFLEDEVNNLAVIRQLRSLGVSVALDDFGTGY 644 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL PFD +K + I+ S+I +A+ + + +A+ + + Sbjct: 645 SSLSYLTRFPFDQIKIDKFFSMNLIERSDCATIVSSVITLARGLGISTVAEGVETVRQFE 704 Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949 L G DY Q P+ +++ Sbjct: 705 LLREAGVDYFQGYLFGHPVPASAL 728 >gi|307822843|ref|ZP_07653074.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307736447|gb|EFO07293.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 719 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 135/554 (24%), Positives = 264/554 (47%), Gaps = 20/554 (3%) Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL----P 454 + S+A G+ ++ D + ++ TI G ++G ++L Sbjct: 162 QSEGKLSMASVIFNNIGEGIFVTDKDKKIISVNEAFTTITGFTQQEVYGKNAHFLHSKKN 221 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 I I+D L + + Q E R + + + +S+G++ Y+ Sbjct: 222 SIKIDD------ELSN-LTGTVNSWQGEVWRRHKNTMDFPSWTTVSEVKDSSGEVAHYVH 274 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DIT KK+ + + A+ D LT +PNR DR+ L + + + V+ +D+D Sbjct: 275 VFMDITHFKKAQDHLGFLAYHDPLTRLPNRLLLKDRIDHSLQNALR-EGSQAAVLFLDLD 333 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K IND G AVGD +L + +RI L++ D ++R +G+ F + + + ++ A A Sbjct: 334 RFKGINDTYGHAVGDGLLREVAKRIKNLVRKEDTVSRYAGDEFVVFMENIPDAKNPAKLA 393 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P+ + + ++ S+G + + + ++KNA+ AMY AK G N+ + Sbjct: 394 QKLIETFNAPVYIKGYRLKISTSVGISLFPQDGRDTDTLIKNADAAMYRAKKEGRNNFQY 453 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + + +++ ++ L ++E EL L Y P + L ++VG+E+L++W HP+ G + Sbjct: 454 YSLELTTEAFEKMSMEYALRQSIERHELILYYQPQVCLKTGKLVGVESLVRWMHPELGLM 513 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S +F+ IAEE I A+ ++L+ + W D+ + +N+++ L ++ Sbjct: 514 SPKQFIYIAEESGFIVALGEWVLQNACMQMRRWLDEGLQVNKMV-VNVSAIQFLRSDFIA 572 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ ++ T PS ++L + + M N E++ L +L +GI LT+DDFG C + Sbjct: 573 TVERILRSTGLEPSSLELELTGNGFMDNSEQTIKALNQLVALGIDLTIDDFGVGCFSFNN 632 Query: 873 LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L IP +K N S + + I R++I + + +IA I + L + Sbjct: 633 LKRIPVKKLKINSSFVVDVLNNANDEDIARAVIALGHGLHLRVIAMGIESTAQQRRLMDL 692 Query: 931 GCDYIQDSHVASPL 944 GCD Q +SP+ Sbjct: 693 GCDEGQGHLYSSPV 706 >gi|270158764|ref|ZP_06187421.1| putative response regulator, PAS/GGDEF/EAL domain-containing protein [Legionella longbeachae D-4968] gi|289166434|ref|YP_003456572.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae NSW150] gi|269990789|gb|EEZ97043.1| putative response regulator, PAS/GGDEF/EAL domain-containing protein [Legionella longbeachae D-4968] gi|288859607|emb|CBJ13577.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae NSW150] Length = 752 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 135/557 (24%), Positives = 265/557 (47%), Gaps = 17/557 (3%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN---DRDNF 464 + S + + + V + + L+ + G + + + D + F Sbjct: 201 RATLESSINGIVVVNNENKVVDWNQNFIDMWSLSHELIDGKDYDKIQIYIQDKLLDANKF 260 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + ++ D +F +++ M N I+ + DI+E+ Sbjct: 261 HEQIQKIQLNPETTEITTLQL--KDGRFFECYSQLQKM---NKKIVGRVWSFQDISERIS 315 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + A D LT +PNR DR+ + + N V+ ID+D++K IND Sbjct: 316 LTAKLEFQATHDALTELPNRILLFDRIHHAITHAQR-INSLFAVIFIDLDRFKLINDSFS 374 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIA 642 A GD +L ++ R+ ++++ D +ARLSG+ F IL+SE+ I + +I Sbjct: 375 HAAGDSLLKEISSRLKKIMREEDTIARLSGDEFIFILLSESLKKPEDIMAICDKILAAIT 434 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 I + +REI +TAS+G + + E+++NA+LAMY+AK GGN + + + Sbjct: 435 KAITISKREILITASMGISIYPQDGSNVDELIRNADLAMYNAKALGGNQYQFYSAKLNQQ 494 Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + + L A+ ++ELYL Y P + E+++ +EALI+W HPK G + +F+ + Sbjct: 495 SLERLDKESALRKALLSNELYLEYQPQYDVKTEQLIAVEALIRWKHPKKGILLPMDFIPL 554 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I I ++L +W+D+ PP + +N+A+K + + + ++ ++++ Sbjct: 555 AEETGLIVPIGEWVLRTACIQNKAWQDK-GFPPFSVAVNVATKQFMQPDFVQMVKRVLNE 613 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + P +++ +E++++ N + L+ +GI + LDDFGT S LSYL +P D Sbjct: 614 SGLLPEYLEIEVTENILIRNI-AVTESIKELKNLGIRIVLDDFGTGNSCLSYLRALPIDQ 672 Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + E ++++II +A ++ ++A+ + + + L CD +Q Sbjct: 673 LKIDQSFIHDIEENNSDALVVKAIISLANSLSFDVVAEGVENLLQVDFLKNQHCDKLQGY 732 Query: 939 HVASPLGFNSILKLLKE 955 + + P+ + L+K Sbjct: 733 YFSQPVSAEELESLIKN 749 >gi|258406560|ref|YP_003199302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfohalobium retbaense DSM 5692] gi|257798787|gb|ACV69724.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfohalobium retbaense DSM 5692] Length = 650 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 162/639 (25%), Positives = 306/639 (47%), Gaps = 18/639 (2%) Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 + ++ A++++ ++ +W + + + + + L L + + G ++ +VL Sbjct: 8 RFFQPAMIVLIYVLVAGVWIVFSDSIVAQLAPSSHWRTTLQS-LKGLFFVAGTGILLYVL 66 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHGPI 449 +++ + L + WDWDI DR T D+++ L G + + Sbjct: 67 -IRGYAESLRQKERHNRLTQRAAKACSWDWDIEADRFTWAGDVSSFLTEGDGTSPLPRTY 125 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGD 508 ++ L +IH D NF + + R L EFR + N W + + Sbjct: 126 QDVLRHIHPEDIPNFERAVQESLL-RDQELHLEFRWQRGANT-RWFFAVGEVERDLTTNK 183 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 GI DIT++K++ + + + D LTG+ NR FL RL + + V Sbjct: 184 PQHLRGIIRDITQRKQAEQELAYKSEWDGLTGLLNRSFFLKRLEQLFQTQRRLGHCSFAV 243 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +++DID++ +IND LG VGD VL +RR+ L D LARLS + FGI+L + N+ Sbjct: 244 LLLDIDRFSRINDSLGHWVGDAVLQEASRRLANFLSPADSLARLSADEFGILLQASNDQD 303 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKH 686 ++ A + + + P++L +I +TASIG + + +L++A AM AK Sbjct: 304 QVLRSAHHILEVLKTPMHLSPHDINITASIGVVTCFDANPYNNPEYILRDAATAMRQAKL 363 Query: 687 RGGNHVESFRV--SSFRSDRVMIKEDLC---LAVENSELYLVYHPIIRLMDEEIVGLEAL 741 +GG+ + +F+ + + + ++ L EL+L + PI+ L EI G EAL Sbjct: 364 QGGDQIAAFKKALHTQAFEALSLENQLRKNLRDPAQQELFLAFQPIVDLGSGEIAGFEAL 423 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM--PPIFILIN 799 I+W I + F+ +AE+ +I+ + ++L+ + + R + + +N Sbjct: 424 IRWRLADGTVIPPNRFIPVAEQSGLIQPLGKWVLDSACAALAALRANDPNAVDHMHVNVN 483 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++++ L ++ + L+ ++L +E+V+M N + + LG+L++IGI + Sbjct: 484 VSARQLEQHDFVREINELLLIHNLPAQTLRLELTETVLMENAAQVQNFLGQLQEIGIGVA 543 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL +T+K + S + + E AI ++II MA+++ T++A+ Sbjct: 544 VDDFGTGYSSLSYLHRFSINTLKIDLSFVQSVLTNEHSKAITQAIIDMAQSLNKTVVAEG 603 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I + + MGC Y Q + PL ++ +LL ++ Sbjct: 604 IETQEQAALIAAMGCRYAQGFLFSYPLEKEALPQLLDQQ 642 >gi|253701124|ref|YP_003022313.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter sp. M21] gi|251775974|gb|ACT18555.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Geobacter sp. M21] Length = 869 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 132/445 (29%), Positives = 231/445 (51%), Gaps = 7/445 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 EQ+ + + I A D +T +PNR S + RL L+L+ + R V+ ID+D++K IN Sbjct: 424 EQELNEQRIEYLAHYDTVTKLPNRFSLMARLGQALELAKR-FSSRLAVIFIDLDRFKNIN 482 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L + R+ + ++ DI+ARL G+ F ++L N+++ A ++++ Sbjct: 483 DSLGHHIGDRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISAAHAVRKIQQT 542 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 ++ + E+ +T SIG + + + T E++KNA+LAMYHAK G N + F Sbjct: 543 LSQGYTVESHELNITPSIGISVYPTDGETVQELMKNADLAMYHAKSAGRNSYQFFTQEMN 602 Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + + + DL A+E E+ L Y P I L E+VG+EAL++W HP G ++ F+ Sbjct: 603 LTVQARLVLESDLRTALERDEMMLHYQPQIDLKSGEVVGVEALLRWRHPVRGAVAPDVFI 662 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AE+ +I +I F L+ + W Q P+ + +N++++ + L + ++ Sbjct: 663 PVAEDTGLILSIGEFALKSACEQLALWISQGL-SPLRMAVNLSARQFKQSNLPSLLADIL 721 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + T + ++L +ES M +P + + L LR++G+ L +DDFGT S LSYL P Sbjct: 722 AATGVAAHLLELEITESSAMDDPNTAIVHLRTLREMGVELAIDDFGTGYSSLSYLKLFPV 781 Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 + +K + S + G I + I +A N+ ++A+ + E + L CD +Q Sbjct: 782 NRLKIDRSFVRGIDTDSEDAEIAAATIALAHNLGKEVVAEGVETEAQCRFLRGQQCDILQ 841 Query: 937 DSHVASPLGFNSILKLL-KERFPLV 960 + PL I L R P Sbjct: 842 GYFFSEPLSAAGIASYLAANRRPPA 866 >gi|163849591|ref|YP_001637634.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163661196|gb|ABY28563.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 1428 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 150/577 (25%), Positives = 261/577 (45%), Gaps = 20/577 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ + + + + ER LA+ + W+ D+ T + + +LG+ S Sbjct: 852 VGALRDISEQRRANAALRASEERLRLALQAGRMVAWERDLKTGLATRSDNALQLLGIGS- 910 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 GPI L +H DR + + F Y EFR W+ +R + Sbjct: 911 ---GPISLLLDNVHPEDRAHV----ERFTAYGGALSTVEFRYLHPAGPQIWLTMRAERV- 962 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + R +GI DITE+K S E A D LTG+PNR+ F RL L + Sbjct: 963 ----EAGRIVGITFDITERKLSEEQAWRAANHDALTGLPNRRLFHQRLEQALAAAER-GG 1017 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 T++++D+D + +ND+ G GD VL ++ R+ E L+ D +ARL G+ F ++L Sbjct: 1018 TSVTLLLVDLDTLRDVNDIHGHDAGDAVLREVSSRLVEGLRASDTVARLGGDEFALLLTE 1077 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 A A + + + P+ +T TASIG A++ ++LK+A++A+Y Sbjct: 1078 PLRLEHAAKHAEVLLERLRQPLVYRGHRLTCTASIGLAAYPDHHRNPYDLLKDADIALYR 1137 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK +G N F I ++ AV ++ Y P I IVG EAL Sbjct: 1138 AKAQGRNSAVVFAAEMRSQTERRVLIAAEVRTAVAAGQIVPYYQPKICFTTGAIVGFEAL 1197 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 +W HP+ G ++ F E + AI ++ ++A D+ W P + +N + Sbjct: 1198 ARWQHPEKGLLTPGYFGSAFENPELATAIGSSLIRQVAADLGQWCRCGLDPG-RVAVNFS 1256 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTL 860 S + +L + +++S+ P+R ++ +E+V +G+ E L RL GI +TL Sbjct: 1257 SAEFRRPDLAGDILSVLSEHDVPPARFEVEVTETVFLGHGTEVVPATLRRLHDNGILITL 1316 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT + L++L P +K + S + + AI+ ++I + +++ + A+ + Sbjct: 1317 DDFGTGFASLTHLKQFPVGHIKVDQSFVRNVVQDQGDAAIITAVIGLGRSLGMQVTAEGV 1376 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L+ MGCDY Q P+ + + L+ Sbjct: 1377 ETVVQANRLSAMGCDYAQGYLYGKPMAGSRVPWFLRN 1413 Score = 259 bits (663), Expect = 1e-66, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 10/364 (2%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 G A +++ + + R+ L I++ L Sbjct: 104 GEPHIRFYAGAPLVLGAGIHLGSLCLIDRVPRSFSAEQQEQLRDLAQIVVAQ------LR 157 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + L S D++ D+ R +P ++ +LG + + G + Sbjct: 158 LSKAERKARESADDYRLLADNSSDLIIRSDLDGTRRYVSPAVSRLLGYEARELLGT--HP 215 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILR 511 L +H ++ ++ +L + + R R D+ F W+ I G Sbjct: 216 LASVHPDEASSYAQLLKQLEAGQISEAVTQQRYRRRDSSFVWVEISFSLTREEETGGPNG 275 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ I DI+++K + A D LTG+PNR F ++L + + + ++ + Sbjct: 276 YVAIIRDISQRKAVESEMARIARHDPLTGLPNRLHFREQLEQEIARTKRTSST-FALLCL 334 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND LG GD +L + +RI +L+ D LARL G+ F II + + + Sbjct: 335 DLDRFKLVNDTLGHQAGDRLLKVVAQRIKSVLRTEDTLARLGGDEFVIIQTNCARAEDAS 394 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + ++ P++L V SIG A + + A+ A+Y AK G N Sbjct: 395 RLAERVIAAMLPPVDLGGYPAGVGVSIGIALAPQDSLDHDHLYALADQALYRAKAAGRNT 454 Query: 692 VESF 695 F Sbjct: 455 FRLF 458 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 15/169 (8%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + S+ I ER LA+L + D +WDWD+ D + + G Sbjct: 731 ESRQASEAIRLQEERYRLAMLATQDAIWDWDLGADTAEWSDGAYRLFGYDDAERADTGAW 790 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W IH +DR+ T + + + R E+R AD + + + ++ G LR Sbjct: 791 WKSKIHPDDRERVTTSIKHIIESQEHRWSDEYRFARADGSYAEVTDCGFVIRDTEGQALR 850 Query: 512 YIGIANDITEQKKSL------EGILCNAF---------QDNLTGIPNRQ 545 +G DI+EQ+++ E L A +D TG+ R Sbjct: 851 MVGALRDISEQRRANAALRASEERLRLALQAGRMVAWERDLKTGLATRS 899 Score = 90.0 bits (222), Expect = 2e-15, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 14/191 (7%) Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 R + + V L LI + + V + + + R + S Sbjct: 571 HTAKGRPRWWDVALSPVKTLSGARGLI-LAISRDVTVQVELERDLQTTANRYKALIEASA 629 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 +VW V + T G + G WL +H +DR T + Sbjct: 630 TMVWRATPDGSLVE-SSGWGTYTGQPESAYIG--YGWLDTVHPDDRQRVTTTWREIFASQ 686 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-------- 527 +EFR D + W + R P+ +++G + ++G DI E +++ E Sbjct: 687 AAG-SFEFRALCRDGAYRWTLTRAVPLKDASGQVQEWVGTDGDIHESRQASEAIRLQEER 745 Query: 528 -GILCNAFQDN 537 + A QD Sbjct: 746 YRLAMLATQDA 756 Score = 39.2 bits (90), Expect = 3.2, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 5/130 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFR 465 + S D + D + + + ++ + G G +W+ + + Sbjct: 495 LRDILESSSDCMKLLDQEGNLLFLSAGGLKVMEIDDVGPFLGQ--SWVELWQGEHQVAAK 552 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + + R + A + W + + P+ +G + I+ D+T Q + Sbjct: 553 DAVSQASRGQEARFRGFC--HTAKGRPRWWDVALSPVKTLSGARGLILAISRDVTVQVEL 610 Query: 526 LEGILCNAFQ 535 + A + Sbjct: 611 ERDLQTTANR 620 >gi|192291678|ref|YP_001992283.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] gi|192285427|gb|ACF01808.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] Length = 883 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 143/608 (23%), Positives = 272/608 (44%), Gaps = 25/608 (4%) Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 + + ++ L + + V V + V+ L Q R S+AV Sbjct: 276 VVVSRSVNGVLSSW-WRELWVMVAVACASALAVAVVLFQLGRQIIRQETDLRK-RYSIAV 333 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW--LPYIHINDRDNFRTILD 469 + +D + + GL +G++ +R + + + D Sbjct: 334 DNMAQGLSLFDSTGRLLLFNQRYLDLYGLPAGALKPGMRTFEIVRQLQQAGHDPHLLESY 393 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + F V D ++I P+ ++ +ITE+K+S I Sbjct: 394 RAFALKNAGARSAFEVEFPDG--RTILITREPIPGG-----GWVTTDEEITERKRSDSRI 446 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D+LTG+PNR SF L L+L + + ++ IDID++K +ND LG VGD Sbjct: 447 HHLAHYDDLTGLPNRSSFRKHLGEALNLI--EPGDQLALLYIDIDEFKIVNDTLGHPVGD 504 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L +L R+ + D +ARL G+ F +++ ++ I +F ++ ++ I+ Sbjct: 505 QLLQALADRLRNCVGPDDYVARLGGDEFAVVM---ADASDIREFVAKLQATLRDSIDCAG 561 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707 + ++ ASIG A +++ A+LA+Y AK G F R + Sbjct: 562 QVLSPDASIGIALAPDHSCEVDDLIAKADLALYAAKAEGRRTYRFFMPEMDVKAKARHEL 621 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 +L AV + L + P++ L I G EAL++W HP G +S +EF+ +AE++ +I Sbjct: 622 ATELKRAVTEHDFRLHFQPLVDLNSGTIAGCEALLRWQHPVRGFVSPAEFIPLAEDIGLI 681 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 + + + L++ R + W + + +N++ + A +++T + R Sbjct: 682 EDLGEWALDQACRVAVGWPAS-----MTVAVNVSPIQFRRATFPLKVAAALARTGLAAHR 736 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +E++++ + E + +L +LR +G+ + LDDFGT S LSYL P D +K + S Sbjct: 737 LELEITEALLLQDNESTLAILNQLRDLGVKIALDDFGTGYSSLSYLHRFPIDKIKIDKSF 796 Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + TE+ I+R+I+ +A T +A+ + L R+GC +Q + L Sbjct: 797 VDTLTEEAGSATIVRAIVQIAAAGNKTTLAEGVETAAQRDLLRRLGCQQMQGYLFSPALP 856 Query: 946 FNSILKLL 953 +++ +L+ Sbjct: 857 EDALARLI 864 >gi|89091871|ref|ZP_01164826.1| hypothetical protein MED92_06886 [Oceanospirillum sp. MED92] gi|89083606|gb|EAR62823.1| hypothetical protein MED92_06886 [Oceanospirillum sp. MED92] Length = 992 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 133/599 (22%), Positives = 242/599 (40%), Gaps = 20/599 (3%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 + R I ++ + + + + + + +R + Sbjct: 402 TVITRDGTAIPVTVNGKAVLWNGQKARAASFRDITRRIEYQKRLMASEDRFRQLSDLVAE 461 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 + + + + + G + + L L + + Sbjct: 462 GLLIYS-ENKIIDVNQSLCELFGQRREDLLESDLSELFS---------EQSLTAINNHPD 511 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 E + AD I M +G L + DI+ K+ E IL A D Sbjct: 512 TAAALELSLERADGTLFPAEITTASMQFDDG--LFIVLSIRDISRYKEQEEHILYQAQFD 569 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LT IPNR DR + + D + +M ID+D +KK+ND +G VGD +L T Sbjct: 570 LLTHIPNRFLAKDRAEQAIRNADKHDG-KLALMFIDLDGFKKVNDSMGHEVGDQLLQQAT 628 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 RR ++ LAR G+ F II + A + + + P ++ +++ VTA Sbjct: 629 RRFVSCIEKQHTLARHGGDEFIIIQEDIADPTDSEIVAEKILQQFSNPFSIENKQLIVTA 688 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLA 714 SIG + + S++L+ A++ MY AKH G N + + D L A Sbjct: 689 SIGISIYPDDANNYSDLLRAADIGMYKAKHDGRNRFHYYTQEMNDIATRKLALDNSLREA 748 Query: 715 VENSELYLVYHPIIRLMDEE--IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 ++N E LV+ P+I + + + G EALI+W P G +S EF+ E+ +I I Sbjct: 749 LQNREFNLVFQPLICNVKGQPKVQGAEALIRWTSPVLGQVSPVEFIPHTEQSGLIIPIGR 808 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++LE+ + W D +FI +N++ + N+L + + + + P + + Sbjct: 809 WVLEQACQQAKRWVDD-GQEDVFISVNVSPRQFKGNDLLRDLTSALESSGLHPHHLNIEV 867 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +E +++ L + +GI+L++DDFGT S L+YL PF+ +K + S + Sbjct: 868 TEGLLIEASPELNNTLQLITDMGINLSMDDFGTGYSSLNYLKKFPFNNLKIDRSFIKELP 927 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 ++ + I MA + ++ A+ I L + CD +Q ++ P+ N Sbjct: 928 DNSDSAILVTATIAMAHQLGLSVTAEGIETAEQYNYLRGLRCDRLQGFYMGKPVPANEF 986 Score = 50.3 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 17/162 (10%), Positives = 46/162 (28%), Gaps = 18/162 (11%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 V + +++ + + + + R S + ++ + V + Sbjct: 304 AVKQLYSRLVETLRSNAQQQKDLERSEHRLQNFDKVSSEAIFIHNSEG-IVDVNKQAEKM 362 Query: 438 LGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 G + + +D ++ ++ Q V D Sbjct: 363 FGYTHTELLQ--------LKPDDFFSAESLPVAMEKVRTQSETPYQAT--VITRDGTAIP 412 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + + + + NG R DIT + + + + A +D Sbjct: 413 VTVNGKAVLW-NGQKARA-ASFRDITRRIEYQKRL--MASED 450 >gi|237746601|ref|ZP_04577081.1| GGEF/EAL/PAS/PAC-domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229377952|gb|EEO28043.1| GGEF/EAL/PAS/PAC-domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 588 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 131/554 (23%), Positives = 256/554 (46%), Gaps = 13/554 (2%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + + P A +LG + S + I+ + + + Sbjct: 31 RALLEKLPVGLMQIGEDERIRFVNPHFAGMLGYSPESF---PSSIKDLINPDTYFHSQHT 87 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSL 526 R R Q E R R + IR + + NG I ++ + K Sbjct: 88 WKDMWHTMR-RFQVEIRFRHKKGYYILTENIIRLILDENGLPDYAILVSRPADPDGKPVP 146 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + D LT +P R L L+ + V+ ++I+++K IN+ LG Sbjct: 147 DR--HLSLFDPLTSLPTRNYLDSFLDGALERT-RQGGKMLAVLELNINRFKIINESLGHD 203 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD +L +++R+ + D + RL G+ F ++L + A + K++ P+ Sbjct: 204 AGDALLKLVSKRLIHAVHENDTVVRLGGDEFVVVLEKIRKPADVVSIAARLMKTVTEPLQ 263 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 L ++++ SIG + + + +LK+A++A+ A+ + + V F + + Sbjct: 264 LSGHDLSIAVSIGGSLYPRDASDAGTLLKHADIALAEARRKRSSVVRFFNPDMNVTPKER 323 Query: 707 I--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + + +L A++ +E L Y P + L EI LEALI+W+HP G I+++ F+ +AEE+ Sbjct: 324 LITESELRRALDRNEFTLFYQPRLCLKTGEIASLEALIRWNHPGEGIITAARFIPLAEEI 383 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I+ I +LE IA ++ W+ + + + N+++++L + L ++ I++T S Sbjct: 384 GLIEKIGEHVLEAIAHQLVKWKTEN-TVRLPVAFNVSTRELYTDGLTASLKKTIAETGLS 442 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P +L +ES ++ + + R L +R++G+++++DDFGT S L YL +P D +K + Sbjct: 443 PHLFELEITESSLIEDMDEVRANLCDIRQLGVTVSIDDFGTGYSSLRYLSTLPIDLLKID 502 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + G +E +I+ S I MA ++ +IA+ + + + L GCD IQ + Sbjct: 503 SSFIAGLANSEGMKSIVESTIAMAHSLNMPVIAEGVSAKEQLDFLIAKGCDQIQGYLCSP 562 Query: 943 PLGFNSILKLLKER 956 PL + L++ Sbjct: 563 PLPPEELEMFLQKH 576 >gi|313110052|ref|ZP_07795955.1| putative sensory box protein [Pseudomonas aeruginosa 39016] gi|310882457|gb|EFQ41051.1| putative sensory box protein [Pseudomonas aeruginosa 39016] Length = 899 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + +N + Q + + ++ H + +F Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 AV S D P +I ++ + + LP + + Sbjct: 351 --AVEQSASAFLLIDRNGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S + + Q EFR R +++ +W + + + + G++ YIGI DIT+ K + + Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A++DNLTG+ NR F+ L L+ S + +++++DID +K+IND LG Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LVSL RR+ L LAR + N F ++L + K A + + P+ + Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 + I +T SIG AS ++K A LA++ AK G + V+ F + + Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +L A+ +EL + Y P + L +++GLEAL++W HP+ G I F+ +AEE Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I +++ R + + I IN++ K D +L + A++ + Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S+++L +ES+++ + +R L RL+ +G++L +DDFGT S LSYL P D +K + Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + ++ + I ++I MA N++ ++A+ + + L R CD Q P Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880 Query: 944 LGFN 947 + + Sbjct: 881 IPSD 884 >gi|307318092|ref|ZP_07597528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sinorhizobium meliloti AK83] gi|306896133|gb|EFN26883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sinorhizobium meliloti AK83] Length = 1071 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 128/581 (22%), Positives = 249/581 (42%), Gaps = 32/581 (5%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + ++ S + + D V +D + +L + ++ Sbjct: 509 AKRASDEISRAQRHAEAAADQLSSVLESTMDSVMLFDADWRVRYLNENARKLLQVGDEAL 568 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 R + + +F + R + ++ W+ P + Sbjct: 569 G---RVFWKLFPEEEEGSFAKHCREVMDRRVRSFFEDH--LSSLG--RWVEANASPTRD- 620 Query: 506 NGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 DITE++++ E + A D LTG+ NR F + L+ S Sbjct: 621 -----GISIFCRDITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNES 675 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ R V+ +D+D +K +ND LG GD +L ++ R+ + ++ + +ARL G+ F Sbjct: 676 ---NHARMAVLCLDLDGFKAVNDTLGHPAGDALLRQVSTRLIQSVRTTETVARLGGDEFA 732 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II + + A + +++ P ++ TV SIG A ++ E++K A+ Sbjct: 733 IIQPLTESRDEAFRLAQRLIDTLSEPFSIEGAAATVGTSIGIAFAPEDGTSADELIKAAD 792 Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +A+Y AK G + F + + +K + A+ E L Y P++ L + Sbjct: 793 IALYSAKSSGRGTYKLFDVAMHAQLQTHQQMKITMRDALARGEFELHYQPLVSLESRCVS 852 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 EAL++W HP G I+ SEF+ IAEE +I I ++L R W ++ + + Sbjct: 853 CCEALLRWRHPDRGMIAPSEFIPIAEETGLIVPIGEWILGEACRQAARWPER-----VSV 907 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L + +S T P+R++L +E+V++ E + LL LR++G+ Sbjct: 908 AVNLSPVQFKHRNLVRAVAKALSATRLDPARLQLEITETVLLDESEHNLELLQDLRRLGV 967 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914 + +DDFGT S L YL PFD +K + + + + AI++++ + +++ T Sbjct: 968 KIAMDDFGTGYSSLGYLRSFPFDKIKVDQAFVRDLPHGKESLAIVKAVAGLGQSLGMTTS 1027 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + E + + G + +Q + PL I KL+ Sbjct: 1028 VEGVETEDQLAVVDSEGFNEVQGYLFSRPLPAAEISKLIAA 1068 Score = 102 bits (255), Expect = 3e-19, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 4/152 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + V++ + + + R + ++W D D G Sbjct: 248 YGVLEDIDERRRAADDLRESEARFRAIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEA 307 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G W+ IH +DR + + ++ E+R+R AD + W+I +P Sbjct: 308 EALG--FGWVDVIHPDDRQAVQETFFRATAGK-EPVRSEYRLRRADGSWAWVIDVGQPRF 364 Query: 504 NSNGDILRYIGIANDITEQKKSL-EGILCNAF 534 ++NG L Y+G DIT ++ + AF Sbjct: 365 SANGTFLGYVGSVLDITGRRAAEIAQQEAQAF 396 Score = 90.0 bits (222), Expect = 2e-15, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 3/149 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I + + + + E V + W D + + P + + GL Sbjct: 120 FVVVTIVDITNLRRTEETLRASEEHYRSLVDLHPQVPWTADTAGEVLEVGPRWSELTGLG 179 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G W +H D + + + E+R+ + W R Sbjct: 180 EKETLGS--GWAKAVHPQDAEALQEEWRRSLA-SGAPFDCEYRLLTKTGDYRWFRARAAA 236 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++G I+R+ G+ DI E++++ + + Sbjct: 237 KRDADGKIVRWYGVLEDIDERRRAADDLR 265 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 102/320 (31%), Gaps = 34/320 (10%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 QP + + I A Q + S D V D+ Sbjct: 361 QPRFSANGTFLGYVGSVLDITGRRAAEIAQQEAQA---FIRSIFDSSPDCVRVLDMEGRP 417 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + I GL G+ + W +D D +S + R E VR Sbjct: 418 LLMNEAGRRIFGLNEGAPV-TGQTWDSIGRASDADKVEAAWESVRRGKTARF--EISVRD 474 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 A + M + P+++ +G R + I DIT+ K++ + I ++ Sbjct: 475 AGGEERCMDVISAPITDHHGKPFRILSIWRDITDAKRASDEISRAQRH--------AEAA 526 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGI--AVGDDVLVSLTRRIGELLK 604 D+L+++L ++ +VM+ D D + + +N+ VGD+ L + ++ + Sbjct: 527 ADQLSSVL------ESTMDSVMLFDADWRVRYLNENARKLLQVGDEALGRVFWKLFPEEE 580 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 F + ++ F S+ + SI T Sbjct: 581 EGS---------FAKHCREVMDR-RVRSFFEDHLSSLGRWVEANASPTRDGISIFCRDIT 630 Query: 665 SSKITSSE-MLKNAELAMYH 683 + + +L ++A Sbjct: 631 ERRRAEEDTLLAQKQMAHMA 650 Score = 51.5 bits (122), Expect = 8e-04, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 5/136 (3%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + + G + V D V +LG + G + I ++ Sbjct: 12 RSHDLFQRLMDGIAEPVIIKDDASRFVFINDAACDLLGKDRNQLIGRTDHD---ILPWEQ 68 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDI 519 + LD V + E ++ D ++ + R +S G + DI Sbjct: 69 ADRIVSLDRIVLSTGEGHELEEQITTPDGTQRTLLTKKRCVSIPAGSTQEKFVVVTIVDI 128 Query: 520 TEQKKSLEGILCNAFQ 535 T +++ E + + Sbjct: 129 TNLRRTEETLRASEEH 144 >gi|311693671|gb|ADP96544.1| sensory box/GGDEF family protein [marine bacterium HP15] Length = 916 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 143/613 (23%), Positives = 273/613 (44%), Gaps = 13/613 (2%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 W + +P +V G L++ + F + ++ + +Q R Sbjct: 306 WLLQTRSTPAFDFLASDPRPPIVLGSGLVISALLFLFVLALIRSRLMAQ---ISAGRYRA 362 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 G+ ++ D + +P ILG + N+ +H +D + D Sbjct: 363 ITEGAANVTLVMDRAGQPLYASPSSLDILGFEPDQV--QALNFEELVHGDDWPQLQRGFD 420 Query: 470 SFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 V ++ R+R A Q+ M M + G + + D+T+ K + Sbjct: 421 DSVQSPGKQMPVIRVRIRDAKGQWRDMEGTFTAMLSVPG-VNGVVLSLRDLTQLKAAQSE 479 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + AF D LTG+ NRQ F DRL ++ S +M +D+D +K+IND LG G Sbjct: 480 LHRLAFYDPLTGLANRQLFRDRLNHVVSRSRRSGEP-AALMFLDLDGFKRINDTLGHDSG 538 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D++L + + + ++ D +ARL G+ F ++L ++S A + +S+ I L Sbjct: 539 DELLCQVAQWLVGCVREEDSVARLGGDEFVVLLSRISDSDAAGKVAETILRSLCQRIRLN 598 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708 + E+ +T SIG + ++K A+LAMY AK G N + F + + Sbjct: 599 DHEVGITVSIGITMIPHDSEDAGTLMKYADLAMYRAKELGRNTFQFFTPAMNIKAARRLL 658 Query: 709 E--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 + +L A++ L Y P I L E ++G+EA ++W HP+ G +S+ +F+ +AEE + Sbjct: 659 QQEELATALDGDRFVLHYQPKIDLASERVIGVEAFLRWHHPEKGLVSAQQFIGLAEETGL 718 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + + L + + + + + +N++ + L D+ + ++ +I++T SP Sbjct: 719 IVRLGEWALRQACIQVQALERA-GFESLKMAVNLSVRQLTDSGFLDMIRQVITETGVSPE 777 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 R++L ++ +P R LL L +G+ L LDDFGT L L +P D +K + Sbjct: 778 RLELEMPAELLNEDPRMLRELLVSLHDLGVCLILDDFGTGSCSLVALQQLPLDVIKIDHR 837 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + ++I +A+ + T++A+ + + L GC Q + + PL Sbjct: 838 FIRDIPYNVSATDVASAVIALARKLHLTVVAEGVETPQQLSFLKTHGCAQCQGNLFSYPL 897 Query: 945 GFNSILKLLKERF 957 ++++ L ++ Sbjct: 898 DEDALIGFLIRQY 910 >gi|218247443|ref|YP_002372814.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|257061220|ref|YP_003139108.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802] gi|218167921|gb|ACK66658.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|256591386|gb|ACV02273.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802] Length = 696 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 137/558 (24%), Positives = 264/558 (47%), Gaps = 28/558 (5%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 D R + S + + + D + P + H Sbjct: 162 KDLIRLASFPELSPNPIIEMDFSGNLTYLNPAASIKF---------KSLEQDKLKHP--- 209 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 +L + L E V + + S+ ++R +IT+ Sbjct: 210 -VIAGLLSEASNIQGNLLLREITV----GEEIFEQY---VHYLSDSQLIR--SYLFNITD 259 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K++ + + +AF D LT +PNR F ++L L + +++L V+ +D+D +K IND Sbjct: 260 RKEAEKKLKYHAFYDTLTNLPNRTWFDEKLAIALTKAKRENHL-LAVLFLDLDSFKNIND 318 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG +GD +L +R+ ++ D++AR G+ F ++L ++ + A + + Sbjct: 319 TLGHPMGDQLLKQFAQRLNSCVRSGDMVARWGGDEFTLLLPQIHSPEDTVNLAQRILDEL 378 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699 P + ++ + SIG A + + +LKNA+ A+Y AK RG NH + ++S Sbjct: 379 KQPFEVSGHQLYIKTSIGIAIYPQDGHDTESLLKNADAALYRAKERGRNHYRFYSSTMTS 438 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 S + ++ L A+E +EL L Y P ++L + +I G+EAL++W HP+ G +S ++ + Sbjct: 439 KASMLLKLENLLYQAIEQNELSLHYQPQLKLKNHKISGMEALLRWYHPELGQVSPAKLIP 498 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 + E+ +I ++L++L + +W+ PP+ + +N ++K + E + ++ Sbjct: 499 LVEKTDLIVPVSLWVLRTACQQNKTWQKAGL-PPVTMGVNFSAKQFQQPNIVEMVSQVLG 557 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T P ++L +E+ +M N E S+ LG LR++G+ ++LDDFGT S LSYL P Sbjct: 558 ETNLDPQLLELEITETALMENIEFSQETLGELRQLGVKISLDDFGTGYSSLSYLQKFPVT 617 Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 T+K + S + T AI+ ++I + K+ +IA+ + ++ L ++ C+ IQ Sbjct: 618 TLKIDQSFIQSVQDTPPNTAIISAVIALGKSFNLRVIAEGVETLKQLELLQQLNCEEIQG 677 Query: 938 SHVASPLGFNSILKLLKE 955 + PL + + L Sbjct: 678 YWFSRPLTPENATQFLSR 695 >gi|15600210|ref|NP_253704.1| hypothetical protein PA5017 [Pseudomonas aeruginosa PAO1] gi|254238273|ref|ZP_04931596.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254244099|ref|ZP_04937421.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|9951304|gb|AAG08402.1|AE004914_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126170204|gb|EAZ55715.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126197477|gb|EAZ61540.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 899 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + +N + Q + + ++ H + +F Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 AV S D P +I ++ + + LP + + Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S + + Q EFR R +++ +W + + + + G++ YIGI DIT+ K + + Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A++DNLTG+ NR F+ L L+ S + +++++DID +K+IND LG Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LVSL RR+ L LAR + N F ++L + K A + + P+ + Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 + I +T SIG AS ++K A LA++ AK G + V+ F + + Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +L A+ +EL + Y P + L +++GLEAL++W HP+ G I F+ +AEE Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I +++ R + + I IN++ K D +L + A++ + Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S+++L +ES+++ + +R L RL+ +G++L +DDFGT S LSYL P D +K + Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + ++ + I ++I MA N++ ++A+ + + L R CD Q P Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880 Query: 944 LGFN 947 + + Sbjct: 881 IPSD 884 >gi|89901664|ref|YP_524135.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89346401|gb|ABD70604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 1114 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 140/577 (24%), Positives = 256/577 (44%), Gaps = 17/577 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +I + A + + R S D W+ D V T + L + Sbjct: 539 GLITDITARKQSEERLRESEARFRALTELSSDWYWEQDAQFRFVRLDGSSQTSMRLPEDN 598 Query: 445 MHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + R +L + +E A W+ I P+ Sbjct: 599 YLGVTRWETDAQGVSQAQWAAHRAVLQAH----ETFHDFEMLCTDAVGCLTWVAISGTPI 654 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G Y GI DI+E+K++ E I AF D LT +PNR+ +DRL L SA + Sbjct: 655 FDVQGQFKGYRGIGRDISERKRAEEKIERLAFYDVLTDLPNRRLLMDRLQQALVSSAREH 714 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 ++ ID+D +K +ND G VGD +L + +R+ ++ D +ARL G+ F ++L Sbjct: 715 GA-GALLFIDLDNFKDLNDTQGHDVGDALLQQVAKRLLASVRETDTVARLGGDEFVVMLQ 773 Query: 623 SENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 + + + + P L E T SIG + + + T ++LK A Sbjct: 774 GLERTQADAITQVEQVGRKIMAQLNQPYRLGSAEHHSTPSIGVTLFDNQQQTLDDLLKQA 833 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LAMY AK G N + F + ++ +L + EL L Y P++ D + Sbjct: 834 DLAMYEAKSAGRNTLRFFDPTMQALVTQRTALELELRHGLARDELVLFYQPVVD-QDARV 892 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG+EAL++W HP+ G ++ F+ +AE+ +I + ++L ++SW QA + Sbjct: 893 VGVEALVRWQHPQRGLVAPLAFIPMAEQTGLILPLGQWVLRVACLQLVSWSAQAATERLT 952 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++++ E + + ++ +T +P R+K+ +ES+++ + + + + LR +G Sbjct: 953 MAVNVSARQFRQPEFVQQVLTMLRQTGANPKRLKMELTESLLLTDTQDAIAKMSELRDVG 1012 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913 + +LDDFGT S LSYL +P +K + S + + AI R+++ + +++ + Sbjct: 1013 VRFSLDDFGTGYSSLSYLKLLPLQQLKIDQSFVRDVLTDPNDAAIARTVLALGQSLGLGV 1072 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 +A+ + L + GC Q P+ + Sbjct: 1073 VAEGVETVGQRDFLLQHGCTRFQGYLFGKPVPIAQLR 1109 Score = 79.2 bits (194), Expect = 4e-12, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 8/166 (4%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIATI 437 I F V+Q V + + +V+ + D + + I Sbjct: 404 IVFGVVQDVTHERAAALALQDRLGFIQNITSRVPGMVFQLRLKTDGRFQFGYVSDLVREI 463 Query: 438 L-GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G++ + L H +D F + + + ++E+R+R D + W++ Sbjct: 464 FRGVSPEQIMQDAAGILKLHHPDDVSEFIASIKASARELK-PWRHEYRLRFEDGEVRWLL 522 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNLTGI 541 + P ++G +L + G+ DIT +K+S E A LT + Sbjct: 523 GQATPEREADGTVL-WNGLITDITARKQSEERLRESEARFRALTEL 567 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 12/142 (8%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 ++ + + W + + + + GLA GS+ I Sbjct: 297 NERLNQQIHLFESMENLAAVGYWTSGADPATLRWSKGMYRLAGLAPGSVMHRSVG-RSRI 355 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 D++ F + E++ D + HW R++ S G+ + G+ Sbjct: 356 RAEDQEKFAQARRAV-----DGAIVEYQWEHPDGRMHWHRSRMQHGSGEGGEAI-VFGVV 409 Query: 517 NDITEQKKSLEGILCNAFQDNL 538 D+T ++ + A QD L Sbjct: 410 QDVTHERAAA-----LALQDRL 426 >gi|205373191|ref|ZP_03225995.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Bacillus coahuilensis m4-4] Length = 446 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 135/447 (30%), Positives = 233/447 (52%), Gaps = 7/447 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I E K + A D LT + NR F+D+ + + DD ++ ID+D++K Sbjct: 2 IVELLKVQTDLEYLAHFDPLTNVYNRNYFIDKFKDFVFYA--DDKDEMALLFIDLDRFKI 59 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND+LG GD VL + R+ + K +++ RL G+ F I++ + + A + Sbjct: 60 INDMLGHLEGDTVLKGVAERLMNVCKEENVIGRLGGDEFIILVPKIRHMDDVLILAQNII 119 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++++P L E +TAS+G + + ++KNA++AMY AK RG N+ + F + Sbjct: 120 NTLSLPYKLKGGEYYITASVGISVFPQDGDDIQTLIKNADIAMYSAKERGKNNYQFFDDA 179 Query: 699 SFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +V I+++L A+E +EL L Y P + + +I G+EALI+W P G +S + Sbjct: 180 IKEKIVSKVQIEQELRHAIERNELELHYQPQVNIQTGKIEGVEALIRWMSPTLGFVSPAT 239 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAE+ MI I ++LE A+ W D + + +NI+ ++ L + + Sbjct: 240 FIPIAEDSGMIMEIGNWILETAAKQAKVWHDM-GYSELTMSVNISMIQFMNPTLIQSVNH 298 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++K+ +PS +KL +E+V M PE R +L RL+++ I LDDFGT S L+YL + Sbjct: 299 ALNKSSLNPSFLKLEITETVAMSEPELVREILLRLKELNIEFALDDFGTGYSSLNYLKNL 358 Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + + I+R++I +A ++ +IA+ + + +L + CD Sbjct: 359 PVDILKIDRSFIQDIDIDKNDFTIVRALIEVAHSLGMLVIAEGVETTSQLSKLGEVNCDM 418 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVK 961 +Q + PL N LL +FP+V Sbjct: 419 LQGYVFSRPLPANEFETLLSSKFPIVS 445 >gi|116053165|ref|YP_793486.1| hypothetical protein PA14_66320 [Pseudomonas aeruginosa UCBPP-PA14] gi|115588386|gb|ABJ14401.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 899 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + +N + Q + + ++ H + +F Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 AV S D P +I ++ + + LP + + Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S + + Q EFR R +++ +W + + + + G++ YIGI DIT+ K + + Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A++DNLTG+ NR F+ L L+ S + +++++DID +K+IND LG Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LVSL RR+ L LAR + N F ++L + K A + + P+ + Sbjct: 523 GDKLLVSLARRLRSCLGDSATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 + I +T SIG AS ++K A LA++ AK G + V+ F + + Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +L A+ +EL + Y P + L +++GLEAL++W HP+ G I F+ +AEE Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I +++ R + + I IN++ K D +L + A++ + Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S+++L +ES+++ + +R L RL+ +G++L +DDFGT S LSYL P D +K + Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + ++ + I ++I MA N++ ++A+ + + L R CD Q P Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880 Query: 944 LGFN 947 + + Sbjct: 881 IPSD 884 >gi|316933824|ref|YP_004108806.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315601538|gb|ADU44073.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] Length = 861 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 138/576 (23%), Positives = 261/576 (45%), Gaps = 41/576 (7%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR--NWLPYIHINDRD 462 +R S+AV + +D + I L+ ++ +R + + + D Sbjct: 306 QRYSIAVDNMAQGLSLFDAAGRLLLYNRRYLEIYRLSPDAVKPGLRGSDIVELLEKAGHD 365 Query: 463 NFR----TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 R + EF +D ++I P+ ++ + Sbjct: 366 PHLIQQYHAFAMKNAGARSSFETEF----SDG--RTILITREPIQGG-----GWVMTHEE 414 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE+K++ I A D+LTG+PNR SF L L+L + + ++ IDID++K Sbjct: 415 ITERKRADSRIHHLAHYDDLTGLPNRSSFRKHLGDALELI--EPGDQLALLYIDIDEFKI 472 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG VGD +L + R+ L D +ARL G+ F +++ ++ + D ++ Sbjct: 473 VNDTLGHPVGDQLLKCIAERLQRCLAQADYVARLGGDEFAVVM---ADATTVRDLVATLQ 529 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++ + I+ ASIG A + +++ A+LA+Y AK G F Sbjct: 530 LALRETFDCAGHVISPDASIGIALAPENGREVDDLIAKADLALYAAKSEGRRTYRFFMPE 589 Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R + +L AV + +L + P++ L I G EAL++W HP G +S +E Sbjct: 590 MDIKAKARHELATELKRAVAEHDFHLHFQPLVDLNSGAIAGCEALLRWQHPLRGFVSPAE 649 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE++ +I+ + ++L+ + W + + +N++ + + A Sbjct: 650 FIPLAEDIGLIEELGEWVLDHACGVAVGWPAS-----MTVAVNVSPIQFRRSTFPLKVAA 704 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 +++T P R++L +E++++ + E + +L +LR +G+ + LDDFGT S LSYL Sbjct: 705 TLARTGLPPHRLELEITEALLLQDTESTLAILNQLRALGVKIALDDFGTGYSSLSYLHRF 764 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 PFD +K + S + T + AI+R+I+ +A T +A+ + L ++GC Sbjct: 765 PFDKIKIDKSFVDTLTAEAGSAAIVRAIVQIAAAGNKTTLAEGVETAAQRDLLRQLGCQQ 824 Query: 935 IQDSHVASPLGFNSILKLL----------KERFPLV 960 +Q + L +++ +L+ + R PL Sbjct: 825 MQGYLFSPALPADALARLIGLPSAEGQTAQRRAPLT 860 >gi|312112340|ref|YP_003990656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] gi|311217441|gb|ADP76045.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] Length = 824 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 133/593 (22%), Positives = 247/593 (41%), Gaps = 20/593 (3%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + LV + V ++G Q + +R + + + Sbjct: 239 MWISFLVFLVWEAVYILGVYAQIGRKLFAKHKQELEVSEKRFKRLSEMTAEGIIVH-AHG 297 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + + G + + N R + ++ Sbjct: 298 KVIEANKAACQLFGYVEKEIIHMPIQ--DLVIPESLKN---------AGRCQEGKCAIQL 346 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R D + ++ + + + DITE+K S E C A D+LTG+PN++ Sbjct: 347 RRKDGTIFNAEV-VQYEYDYGANKKVNVAAIRDITERKNSKEKRQCIAVHDDLTGLPNKE 405 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 + + + ++ VM+++I K IND G +VGD VL+ + + Sbjct: 406 ALHRAIAEKIQEASCR-REEVAVMLLEISGMKTINDFYGYSVGDQVLLRVVEEWKKRCDE 464 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 +L R SGN F +L K A + + P+ + E+ V IG + + Sbjct: 465 SILLGRWSGNEFIAVLSGST-KEKAKALANQLSEIADEPVVVDGLELYVMIKIGISQYPK 523 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLV 723 + +++ A++A Y + + F R + I +++L A+E E L Sbjct: 524 DGTNAKTLIRKADIARYKLRQNAASQFLFFEKPMTREIQEKIATEQELRRALEREEFVLY 583 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P I+L + G+EALI+W+HP+ G IS F+ +AE+ MI IN +++ + Sbjct: 584 YQPQIQLDTGMVTGMEALIRWNHPEKGLISPYAFISVAEQTGMIIPINEWVIRMACQQTK 643 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 P + + +N++ + + + L+ +T P + L +E + M + E+ Sbjct: 644 QLLKDF--PNLSVSVNLSPYEFENRRFVHKLVKLLEETGIPPHHLDLEITERMTM-DTEK 700 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903 + +L RL+ IG+++++DDFGT S LSYL +P D +K + S + K+ AIL +II Sbjct: 701 AIAILKRLKSIGVTISMDDFGTGYSSLSYLTALPIDRLKIDRSFVRNIHGKKEAILPAII 760 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + NI ++A+ + E ++ L CD Q + A PL + ++ L E Sbjct: 761 RLGHNIGVKVLAEGVETEEEVAYLKDKHCDEAQGYYFAPPLSYEELIVFLCEH 813 >gi|253698749|ref|YP_003019938.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Geobacter sp. M21] gi|251773599|gb|ACT16180.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Geobacter sp. M21] Length = 721 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 132/450 (29%), Positives = 237/450 (52%), Gaps = 10/450 (2%) Query: 511 RYIGIANDITEQ----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + + ++I E+ ++ + A D LT +PNR F DRL L+ + + Sbjct: 246 GFNEMLSEIEERNQILRQRQAHLQQLAHYDPLTRLPNRTLFYDRLAQALNQAERNRQA-L 304 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 +V+ ID+D +K IND LG GD +L+ + R+ +++ D +ARL G+ F + + N Sbjct: 305 SVIFIDLDHFKDINDTLGHRTGDLLLIDVANRLSTVVRSCDTVARLGGDEFTVFTQNVMN 364 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + A A + A P L E EI VTASIG + + T E+L NA++AMYHAK Sbjct: 365 ADNAAIVAAKLNALFAKPFQLGESEIYVTASIGVTLFPNDGKTVDELLMNADIAMYHAKA 424 Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F ++ ++RV + DL LA+E E L Y P + L+ + +EAL++W Sbjct: 425 CGKNVYKMFDRKMNEHANERVTLLSDLRLALEREEFVLHYQPKVDLLTGNVTSVEALVRW 484 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G ++ +F+ ++EE I + ++L W++Q + + +N++ Sbjct: 485 MHPRLGMLAPDKFIRLSEESGFIVELTDWVLRTACTQAKKWQEQNLG-SVRVAVNLSPYH 543 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 ++ E + +++ T P+ +++ +ES +M N E + L LR++G+++++DDFG Sbjct: 544 FQRQDVKEAIFSVLDATGLEPALLEIEITESALMQNDEYTCALFRELRELGMTISVDDFG 603 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL P +T+K + + + + + AI+ +II MAK++ I+A+ + Sbjct: 604 TGYSSLSYLHRFPINTLKIDRTFILNMMKSSEDQAIVTAIIAMAKSLNMQIVAEGVETVD 663 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952 +++L GC IQ V+ P+ S+ + Sbjct: 664 QLEKLKDQGCHEIQGFLVSRPVAAESVTQF 693 >gi|116053592|ref|YP_793919.1| hypothetical protein PA14_71850 [Pseudomonas aeruginosa UCBPP-PA14] gi|115588813|gb|ABJ14828.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 950 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 133/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T + + + + + + + + + D + + + I G Sbjct: 378 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 437 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L + ++R I + G+ Q E + + +++ + Sbjct: 438 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 494 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + NG+ +G D++ ++ E + D LTG+ NR+ F +RL + ++ Sbjct: 495 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 554 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ID+D++K +ND LG V D +L + +R+ + LARL+G+ F I+L Sbjct: 555 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 613 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ A + + P+++L E+ + AS+G + ++ S ++ A LAM Sbjct: 614 GGTGTAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 673 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK GGN + FR + S R+ ++ L AVE +L + Y P + L +EA Sbjct: 674 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASARPDSVEA 733 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G I S F+ +AEE +I I F+L R W + + + +N+ Sbjct: 734 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 791 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L + +++ ++ + ++++L +ES + + +LR++G+ L++ Sbjct: 792 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 851 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P D +K + S + + AI+R+II MA +++ ++A+ + Sbjct: 852 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 911 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD +Q + PL +++ + L++ Sbjct: 912 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 948 Score = 118 bits (296), Expect = 5e-24, Method: Composition-based stats. Identities = 63/400 (15%), Positives = 126/400 (31%), Gaps = 31/400 (7%) Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222 + + + + L+ + L + L + SS L+ + Sbjct: 8 LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67 Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 + V+L + + + + WR +S + F + A + Sbjct: 68 LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326 + G+ AIL Y + A + + + Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187 Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376 I+ ++G A L A+ ++L ++ Q LV + Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247 Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++ G SQ + R ++A+ S +WDW++ RV + + Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWNLESGRVQHS-YLE 306 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + ++G R + IH D R L + R + E+RVR + + W+ Sbjct: 307 AVF--SAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 364 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R R M + G + R +G +DI+ +K+ E A Sbjct: 365 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 404 >gi|330994533|ref|ZP_08318457.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1] gi|329758387|gb|EGG74907.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1] Length = 696 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 134/611 (21%), Positives = 255/611 (41%), Gaps = 31/611 (5%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-----------QSL 409 L I+ + + H +A+ Q D R Sbjct: 101 LLRGYIVTRGGRYLGTGSALDLITASHSHAVASAASLQEAAEDLRRANRKILRDKLFIDT 160 Query: 410 AVLGSGDIVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 V + + V + G + R+ ++ + + Sbjct: 161 IVENIPSALLVRSLRHGHLVLVNRAAEAMTGCRRDLLV--ERDVEDVFTPDEIGHLL--V 216 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 F G +G ++ + + R +++ G + +A+D+TEQ+ + Sbjct: 217 SRFAGGGQGVIEKV--LCDHTGAKRAISTRQVTIADERGAPRWELCVADDVTEQRNAQHQ 274 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LTG+ NR F RL T++ ID+D +K +NDV G A G Sbjct: 275 VELLAHYDPLTGLANRALFSSRLEAACAA-----GSTATLLCIDLDYFKTVNDVYGHAAG 329 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L ++ R+ + D++ARL G+ F II ++ A + ++++ P + Sbjct: 330 DSLLRLVSERLRACSRPGDLVARLGGDEFAIIWPDVPAQAELTTRAREIVETVSRPYIID 389 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVM 706 I + AS+G A + S +L+ A++A+Y AK G N + F R Sbjct: 390 GHHIVIGASVGSALYPRDAEASETLLQYADIALYRAKSLGRNGFQFFDQELRDEIQTRAR 449 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 + +L A+ + L L + P+ + + EAL++W HP G I +F+ +AEE + Sbjct: 450 LGSELRGAIAGNGLTLHFQPLYSMPGNRLSACEALVRWHHPTQGMIPPDQFVGLAEENGL 509 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + ++L + W Q + + +N++ L + ++ ++++ P Sbjct: 510 IHDLGEWVLRAACTEAACWPAQ-----VRVAVNVSPIQLRNPRFIRIVEDALAQSGLPPE 564 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 R+++ +E++ + N +R +L RL +IG S+ LDDFGT S L YL F +K + S Sbjct: 565 RLEIEITENIFVQNSATNREILQRLGRIGCSIVLDDFGTGYSSLGYLRSFQFQKIKIDRS 624 Query: 887 LMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + E+ A I+R+II +A++++ I A+ + + L +GC+ +Q + P Sbjct: 625 FVQELPERGAAGIIRAIISLAQSMDIPITAEGVETQDQWTHLNDLGCNQVQGFLLGRPQP 684 Query: 946 FNSILKLLKER 956 SI + + Sbjct: 685 AESIRQAILTH 695 >gi|254237873|ref|ZP_04931196.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126169804|gb|EAZ55315.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 951 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 133/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T + + + + + + + + + D + + + I G Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L + ++R I + G+ Q E + + +++ + Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + NG+ +G D++ ++ E + D LTG+ NR+ F +RL + ++ Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ID+D++K +ND LG V D +L + +R+ + LARL+G+ F I+L Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ A + + P+++L E+ + AS+G + ++ S ++ A LAM Sbjct: 615 GGTGTAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK GGN + FR + S R+ ++ L AVE +L + Y P + L +EA Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASARPDSVEA 734 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G I S F+ +AEE +I I F+L R W + + + +N+ Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L + +++ ++ + ++++L +ES + + +LR++G+ L++ Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P D +K + S + + AI+R+II MA +++ ++A+ + Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD +Q + PL +++ + L++ Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949 Score = 118 bits (297), Expect = 4e-24, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%) Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222 + + + + L+ + L + L + SS L+ + Sbjct: 8 LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67 Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 + V+L + + + + WR +S + F + A + Sbjct: 68 LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326 + G+ AIL Y + A + + + Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSRLQGWGMLGLIL 187 Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376 I+ ++G A L A+ ++L ++ Q LV + Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247 Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++ G SQ + R ++A+ S +WDWD+ RV + + Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + +G R + IH D R L + R + E+RVR + + W+ Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R R M + G + R +G +DI+ +K+ E A Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405 >gi|91974548|ref|YP_567207.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91681004|gb|ABE37306.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Rhodopseudomonas palustris BisB5] Length = 743 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 138/563 (24%), Positives = 257/563 (45%), Gaps = 21/563 (3%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH-GPIRN 451 S+ + R A+ + +D R V + + I L + G + Sbjct: 181 LLSMSRTLELSNLRLDAALNNFLHGLCMFDGDRKVVVSNARFSEIYSLEPDEIECGVPLS 240 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + R F R E D +++R +P++ Sbjct: 241 AIQSVCRE-RGTFVETWSERRLGRSSHEISEVSSLL-DG--RAILVRCQPVAGG-----G 291 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 ++ + DITE+ +S + I A D LTG+ NR +F +R+ +V+++ Sbjct: 292 WMTVHEDITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGET-FSVIML 350 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LKI 630 D+D++K +ND LG GD +L ++ R+ ++ D+LARL G+ F ++ +S + Sbjct: 351 DLDRFKLVNDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYEEA 410 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 FA + + PI + ++ ++ S G A S E++KNA+LA+Y AK G N Sbjct: 411 VAFADRIVNCLIDPIEIEGHQLVISTSAGIALAPQHGTDSDELIKNADLALYQAKAAGRN 470 Query: 691 HVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 +F + + R ++ +L A+ + E L Y P + ++G EAL++W HP+ Sbjct: 471 GYVTFETAMKDRANARQQLEGELRQAILHREFDLYYQPQVDARSGRVIGAEALLRWRHPR 530 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + SEF+ IAEE +I+ + ++L + I W PI + IN++ L Sbjct: 531 RGFVPPSEFIPIAEETGLIEKLGEWVLTEATTEAIRWPA-----PIKLAINLSPIQLTRG 585 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L + + + + P R+++ +E+V + + + ++ +LR +G+S+ LDDFGT S Sbjct: 586 KLVDTVTQALRFSGLPPGRLEVEITETVFLEDEVNNLAVIRQLRALGVSVALDDFGTGYS 645 Query: 869 LLSYLGYIPFDTVKFNGSLMTG-STEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL PFD +K + + AI+ S+I +A+ + + +A+ + + Sbjct: 646 SLSYLTRFPFDQIKIDKFFSMNLIDRRDCAAIVSSVITLARGLGISTVAEGVETVRQFEL 705 Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949 L G DY Q P+ +++ Sbjct: 706 LREAGVDYFQGYLFGHPVPASAL 728 >gi|217978836|ref|YP_002362983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylocella silvestris BL2] gi|217504212|gb|ACK51621.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Methylocella silvestris BL2] Length = 1248 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 145/536 (27%), Positives = 257/536 (47%), Gaps = 9/536 (1%) Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 + + ++ G M + H +D L + G EFR+R Sbjct: 700 MIYVSQNV-DQFGYDPAEMIESPELYKTLQHPDDTAKVLESLVAAATEGGGPASLEFRLR 758 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 +D + W+ P+ +S G +L G DITE+K++ E I A D+LTG+ NR + Sbjct: 759 RSDGVYRWVEGYSTPVRDSAGRLLEIEGTMTDITERKEAQEKIALLARTDSLTGLANRAT 818 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 FLDRL + V+ +D+D++K +ND LG +GD +L ++ R+ + Sbjct: 819 FLDRLQQSFAAAKR-GASPFAVLYLDLDRFKDVNDTLGHGMGDLLLKAVADRLTSGCREA 877 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D+ ARL G+ F I+ + A +R + P E E+ +T SIG AS+TS Sbjct: 878 DLPARLGGDEFAILQSELTDPSGATALAATIRDLLTAPYRFGESEMQITVSIGIASYTSE 937 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724 EML+ A+LA+Y AK G + +RV ++ DL A++ +EL L Y Sbjct: 938 SSGPKEMLEQADLALYRAKEEGRDQFRFHSEELDKEARERVALRADLARAIDRNELELYY 997 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P + L IVG+EALI+W+HP+ G + ++FM I E+ + A+ ++L+ + + Sbjct: 998 QPQLELATSRIVGMEALIRWNHPRRGVLKPADFMSIGEKAGVSIALGHWVLDHACEQMNA 1057 Query: 785 WRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 WR P + +N++ L + + + ++K P ++L +E+++ Sbjct: 1058 WRKAGIAPS-TLAVNLSLGQLKTGDKFVDDVMQTLAKWGLEPKELELDVTEAMLAHVTLM 1116 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901 +L RL+++G+ + +DDFGT+ S L YL +K S+M +T +A++R+ Sbjct: 1117 HNNVLDRLQQLGVQIAIDDFGTQYSSLCYLRTYHVSRLKIPRSVMEAATHDSGSLAMVRA 1176 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGC-DYIQDSHVASPLGFNSILKLLKER 956 II +A+ + ++A+ + E LT +Q + + P+ + +LL+ Sbjct: 1177 IIGIARELNIEVVAQGVETEKQRALLTSAPSPTKVQGFYYSEPVQADRAAELLRNE 1232 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 9/189 (4%) Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 A + + I + ++ A+ L ++ ++ L+ + Sbjct: 311 ARWTMVVTPIPGATFLAGHEPA-VLVAAMGLLLTAAIMTYVEITRRNNLSLRGLVTNLRE 369 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-R 461 R + D + D+ + P I G + G + + R Sbjct: 370 SEARFRRVTDNAHDAIIKADVEGNVNFWNPAAERIFGYKEKEILGRSVH--QLLTPERYR 427 Query: 462 DNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 L F G + E D + + + + GD I I D Sbjct: 428 TKAHAELTRFSQTGEGAVVGRTVELYGLRKDGSEFPIDLSVSAV--PRGDAWSSIAIVRD 485 Query: 519 ITEQKKSLE 527 +TE+ ++ + Sbjct: 486 VTERVRTAD 494 >gi|15600635|ref|NP_254129.1| hypothetical protein PA5442 [Pseudomonas aeruginosa PAO1] gi|313111619|ref|ZP_07797418.1| hypothetical protein PA39016_003370095 [Pseudomonas aeruginosa 39016] gi|9951772|gb|AAG08827.1|AE004957_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|310883920|gb|EFQ42514.1| hypothetical protein PA39016_003370095 [Pseudomonas aeruginosa 39016] Length = 951 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 133/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T + + + + + + + + + D + + + I G Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L + ++R I + G+ Q E + + +++ + Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + NG+ +G D++ ++ E + D LTG+ NR+ F +RL + ++ Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ID+D++K +ND LG V D +L + +R+ + LARL+G+ F I+L Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ A + + P+++L E+ + AS+G + ++ S ++ A LAM Sbjct: 615 GGTGTAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK GGN + FR + S R+ ++ L AVE +L + Y P + L +EA Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASARPDSVEA 734 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G I S F+ +AEE +I I F+L R W + + + +N+ Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L + +++ ++ + ++++L +ES + + +LR++G+ L++ Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P D +K + S + + AI+R+II MA +++ ++A+ + Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD +Q + PL +++ + L++ Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949 Score = 118 bits (297), Expect = 4e-24, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%) Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222 + + + + L+ + L + L + SS L+ + Sbjct: 8 LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67 Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 + V+L + + + + WR +S + F + A + Sbjct: 68 LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326 + G+ AIL Y + A + + + Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187 Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376 I+ ++G A L A+ ++L ++ Q LV + Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247 Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++ G SQ + R ++A+ S +WDWD+ RV + + Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + +G R + IH D R L + R + E+RVR + + W+ Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R R M + G + R +G +DI+ +K+ E A Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405 >gi|194014997|ref|ZP_03053614.1| ggdef domain/eal domain protein [Bacillus pumilus ATCC 7061] gi|194014023|gb|EDW23588.1| ggdef domain/eal domain protein [Bacillus pumilus ATCC 7061] Length = 807 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 154/775 (19%), Positives = 316/775 (40%), Gaps = 50/775 (6%) Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS---SLIIFLF 270 + + + A+ + + ++ +++ +G L+S SLI F Sbjct: 41 KKKVWLIVGALIMGMGIWSMHFISMMA--LHVRAGITYETPLLILSILASFVGSLIAFTI 98 Query: 271 MY---LHWNRWHA----KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 L R I + + +S Y V ++ A + Sbjct: 99 CIQEQLSTRRLLISSITMGSAICSMHYLGMESMANVSISYDPVLFFLSFFIAAIASFFSL 158 Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND------------------ 365 + G ++ L+ + + M T + Sbjct: 159 HLFFRLHRSGKKQEDHLLKIAGALVMGGAVSGMHYTGMAASTMFFHSDGQSPGGGSLELS 218 Query: 366 -IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 +G + LIV + + + + +R + + D + + Sbjct: 219 PFSLSIFIGLMTLIVQTLMIFGAYIDHRIMKQADKLKENEQRFQSLIKHNIDGIIVLSVN 278 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 R ++ IL + S G + Y+ D + + F+ + + E Sbjct: 279 RKVLSANDSGKQILKM-CNSWIG--DDVSQYVMPTD------MWEEFIYESKKAITREAE 329 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 ++AAD +F++ + P+ N + + D+T+Q+ + + I A D LT +PNR Sbjct: 330 LKAAD-RFYYYHVTYIPVH-VNNTLDSIYLVLKDLTQQRIAEKEIHVMAHYDALTELPNR 387 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + ++ L+ +L + + V+ +D++++K IND LG +GD +L + R+ + L Sbjct: 388 RHAINHLSDVLS-AQEETGTSTAVLFLDLNRFKIINDALGHNIGDLLLKAAANRLTQCLP 446 Query: 605 FPDILARLSGNRFGIILISE-NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 +ARL G+ F +I +++ KI + + + P + ++ + SIG A Sbjct: 447 DNGFIARLGGDEFLMIFPDMGHDTQKIEQLSQNIIRQFERPFFIQNHQLITSISIGIAIS 506 Query: 664 TSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELY 721 + E+++ A++AMY +K + + + DR+ + +L A++ + Sbjct: 507 PQNGKDGMELMRKADMAMYLSKKHEQSRYEFFTESMERSSEDRLNRELELRDAIQREQFV 566 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L Y P + ++ G+EAL++ P S F+ +AEE +I I ++++ R Sbjct: 567 LHYQPQVSAKTRQMTGVEALLRMKAPDGSLKSPEAFIELAEESGLIIDIGRWVIDTACRQ 626 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 +W D I + +N+++K +L + ++ + K +PS ++L +ES+ M N Sbjct: 627 AKTWYDNG--LKIPVAVNLSAKQFNSEDLIDLIKLTLKKYDMTPSLLELEVTESMTMDNI 684 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899 ++S+ +L L+ +G+ +++DDFGT S LSYL +P +K + S + K I Sbjct: 685 KQSKQVLTSLKHLGVRISIDDFGTGHSSLSYLKDLPIHRLKIDKSFIEDILNDSKSEQIT 744 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +II M + +IA+ + + L+ GCD +Q + A PL N I K + Sbjct: 745 GAIIAMGHQLSLEVIAEGVETFAQAQLLSAQGCDDLQGFYYAKPLPANDIEKFIA 799 >gi|107104546|ref|ZP_01368464.1| hypothetical protein PaerPA_01005624 [Pseudomonas aeruginosa PACS2] Length = 951 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 132/577 (22%), Positives = 267/577 (46%), Gaps = 10/577 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T + + + + + + + + + D + + + I G Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L + ++R I + G+ Q E + + +++ + Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + NG+ +G D++ ++ E + D LTG+ NR+ F +RL + ++ Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ID+D++K +ND LG V D +L + +R+ + LARL+G+ F I+L Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ A + + P+++ E+ + AS+G + ++ S ++ A LAM Sbjct: 615 GGTGTAALSRLAERLLVQLRQPVSVPGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK GGN + FR + S R+ ++ L AVE +L + Y P + L +EA Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASARADSVEA 734 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G I S F+ +AEE +I I F+L R W + + + +N+ Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L + +++ ++ + ++++L +ES + + +LR++G+ L++ Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P D +K + S + + AI+R+II MA +++ ++A+ + Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD +Q + PL +++ + L++ Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949 Score = 118 bits (297), Expect = 4e-24, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%) Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222 + + + + L+ + L + L + SS L+ + Sbjct: 8 LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67 Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 + V+L + + + + WR +S + F + A + Sbjct: 68 LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326 + G+ AIL Y + A + + + Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187 Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376 I+ ++G A L A+ ++L ++ Q LV + Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247 Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++ G SQ + R ++A+ S +WDWD+ RV + + Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + +G R + IH D R L + R + E+RVR + + W+ Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R R M + G + R +G +DI+ +K+ E A Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405 >gi|254242994|ref|ZP_04936316.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126196372|gb|EAZ60435.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 951 Score = 489 bits (1259), Expect = e-135, Method: Composition-based stats. Identities = 133/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T + + + + + + + + + D + + + I G Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L + ++R I + G+ Q E + + +++ + Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + NG+ +G D++ ++ E + D LTG+ NR+ F +RL + ++ Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ID+D++K +ND LG V D +L + +R+ + LARL+G+ F I+L Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ A + + P+++L E+ + AS+G + ++ S ++ A LAM Sbjct: 615 GGTGTAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK GGN + FR + S R+ ++ L AVE +L + Y P + L +EA Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASGCADSVEA 734 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G I S F+ +AEE +I I F+L R W + + + +N+ Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L + +++ ++ + ++++L +ES + + +LR++G+ L++ Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P D +K + S + + AI+R+II MA +++ ++A+ + Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD +Q + PL +++ + L++ Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949 Score = 118 bits (297), Expect = 4e-24, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%) Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222 + + + + L+ + L + L + SS L+ + Sbjct: 8 LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67 Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 + V+L + + + + WR +S + F + A + Sbjct: 68 LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326 + G+ AIL Y + A + + + Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187 Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376 I+ ++G A L A+ ++L ++ Q LV + Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247 Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++ G SQ + R ++A+ S +WDWD+ RV + + Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + +G R + IH D R L + R + E+RVR + + W+ Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R R M + G + R +G +DI+ +K+ E A Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405 >gi|221066375|ref|ZP_03542480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] gi|220711398|gb|EED66766.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] Length = 809 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 149/635 (23%), Positives = 273/635 (42%), Gaps = 15/635 (2%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 KG V + + + R AL + + V + Sbjct: 181 MALAKGDPLPVFMDVGSLPALVKQALQHQHARGRSQLHFHAQALAIPVSITVHSLQQPDG 240 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLG---SGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + + + + W + TP A ILG G Sbjct: 241 HAQPRLLITVEDLRKQEQLNRDLLNAQEVANIGTWLSYFDGKP-SLTPQAARILGWPVGQ 299 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + L +H DR + G +E R++ W+ + Sbjct: 300 -PFKYADLLGCVHAEDRAYADAQWKKGLA--TGHYAFEMRIQDGT-SVRWVDALGTIEHD 355 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G +R G DITE+K++ + AF D LTG+PNR +D +LD++ Sbjct: 356 VTGKPVRGYGTLLDITERKRTERRMEKLAFFDALTGLPNRFHGIDLAQRLLDIAGQRGQ- 414 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 + TV+ +D+D++K+IND G VGDD+L + RR L ++ARL G+ F + + + Sbjct: 415 QATVLFVDLDRFKEINDSQGHLVGDDLLAEVARRCERTLGGEGVVARLGGDEF-MFVRTL 473 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A + ++A P+ + + V AS+G A + + + E+L+ A++AMY A Sbjct: 474 AEGNDTMALAHEVCSTLASPMRVDDLCFEVGASVGVALYPTHGHSVDELLQRADIAMYQA 533 Query: 685 KHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K +GG + + + + I L A+ S L L + P I L + G+EAL Sbjct: 534 KTQGGGNCQLYDAQMGHRLQRRIALGVKLEEALAQSRLELHFQPKIALDSYALYGVEALA 593 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W +WG +S +EF+ +AEE +I A+ + L+ AR +W P I +N+++ Sbjct: 594 RWHDEEWGWVSPAEFISVAEERGLIIALGDWSLDAAARQWRAWSSAGIAQPPVIAVNVSA 653 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 ++ + E A++ SP I+L +ES +M +P +++ + +L + G +L++DD Sbjct: 654 AQMMSDSFSERALAIMRAHGVSPRCIELEITESALMHDPAKAKRVASQLVEQGFTLSIDD 713 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+ L P +K + S + G +AI+ ++I +A ++ +A+ + Sbjct: 714 FGTGYSSLARLQSFPVSRLKIDMSFVRGMLSEPGSLAIVTAVIGLAHALKLRTVAEGVET 773 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954 + + +L + CD +Q + + + + L Sbjct: 774 QSQLDKLRDLHCDEVQGYLFSKAVPAAELARDWLT 808 >gi|193782686|ref|NP_436089.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] gi|193073142|gb|AAK65501.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] Length = 1071 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 127/581 (21%), Positives = 248/581 (42%), Gaps = 32/581 (5%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + ++ S + + D V D + +L + ++ Sbjct: 509 AKRASDEISRAQRHAEAAADQLSSVLESTMDSVMLLDADWRVRYLNENARKLLQVGDEAL 568 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 R + + +F + R + ++ W+ P + Sbjct: 569 G---RVFWKLFPEEEEGSFAKHCREVMDRRVRSFFEDH--LSSLG--RWVEANASPTRD- 620 Query: 506 NGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 DITE++++ E + A D LTG+ NR F + L+ S Sbjct: 621 -----GISIFCRDITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNES 675 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ R V+ +D+D +K +ND LG GD +L ++ R+ + ++ + +ARL G+ F Sbjct: 676 ---NHARMAVLCLDLDGFKAVNDTLGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFA 732 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II + + A + +++ P ++ V SIG A ++ E++K A+ Sbjct: 733 IIQPLTESRDEAFRLAQRLIDTLSEPFSIEGAAANVGTSIGIAFAPEDGTSADELIKAAD 792 Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +A+Y AK G + F + + +K + A+ E L Y P++ L + Sbjct: 793 IALYSAKSSGRGTYKLFDVAMHAQLQAHQQMKITMRDALAKGEFELHYQPLVSLESRCVS 852 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 EAL++W HP+ G I+ SEF+ IAEE +I I ++L R W ++ + + Sbjct: 853 CCEALLRWRHPERGMIAPSEFIPIAEETGLIVPIGEWILGEACRQAARWPER-----VSV 907 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ L + +S T P+R++L +E+V++ E + LL LR++G+ Sbjct: 908 AVNLSPVQFKHRNLVRAVAKALSATRLDPARLQLEITETVLLDESEHNLELLQDLRRLGV 967 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914 + +DDFGT S L YL PFD +K + + + + AI++++ + +++ T Sbjct: 968 KIAMDDFGTGYSSLGYLRSFPFDKIKVDQAFVRDLPHGKESLAIVKAVAGLGQSLGMTTS 1027 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + E + + G + +Q + PL I KL+ Sbjct: 1028 VEGVETEDQLAVVDSEGFNEVQGYLFSRPLPAAEISKLIAA 1068 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 4/152 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + V++ + + + R + ++W D D G Sbjct: 248 YGVLEDIDERRRAADDLRESEARFRAIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEA 307 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G W+ IH +DR + + ++ E+R+R AD + W+I +P Sbjct: 308 EALG--FGWVDVIHPDDRQAVQETFFRATAGK-EPVRSEYRLRRADGSWAWVIDVGQPRF 364 Query: 504 NSNGDILRYIGIANDITEQKKSL-EGILCNAF 534 +++G L Y+G DITE++ + AF Sbjct: 365 SADGTFLGYVGSVLDITERRAAEIAQQEAQAF 396 Score = 88.1 bits (217), Expect = 7e-15, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 3/149 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I + + + + E V + W D + + P + + GL Sbjct: 120 FVVVTIVDITNLRRTEETLRASEEHYRSLVDLHPQVPWTADTAGEVLEVGPRWSELTGLG 179 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G W +H D + + E+R+ + W R Sbjct: 180 EKETLGS--GWAKAVHPQDAGALQEEWRRSLA-SGAPFDCEYRLLTKTGDYRWFRARAAA 236 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 +++G I+R+ G+ DI E++++ + + Sbjct: 237 KRDADGKIVRWYGVLEDIDERRRAADDLR 265 Score = 71.5 bits (174), Expect = 7e-10, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 103/320 (32%), Gaps = 34/320 (10%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 QP + + I A Q + S D V D+ Sbjct: 361 QPRFSADGTFLGYVGSVLDITERRAAEIAQQEAQA---FIRSIFDSSPDCVRVLDMEGRP 417 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + I GL G+ + W +D D +S + R E VR Sbjct: 418 LLMNEAGRRIFGLNEGAPV-TGQTWDSIGRASDADKVEAAWESVRRGKTARF--EISVRD 474 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 A + M + P+++ +G R + I DIT+ K++ + I ++ Sbjct: 475 AGGEERCMDVISAPITDHHGKPFRILSIWRDITDAKRASDEISRAQRH--------AEAA 526 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGI--AVGDDVLVSLTRRIGELLK 604 D+L+++L ++ +VM++D D + + +N+ VGD+ L + ++ + Sbjct: 527 ADQLSSVL------ESTMDSVMLLDADWRVRYLNENARKLLQVGDEALGRVFWKLFPEEE 580 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 F + ++ F S+ + SI T Sbjct: 581 EGS---------FAKHCREVMDR-RVRSFFEDHLSSLGRWVEANASPTRDGISIFCRDIT 630 Query: 665 SSKITSSE-MLKNAELAMYH 683 + + +L ++A Sbjct: 631 ERRRAEEDTLLAQKQMAHMA 650 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 5/136 (3%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + + G + V D V +LG + G + I ++ Sbjct: 12 RSHDLFQRLMDGIAEPVIIKDDASRFVFINDAACDLLGKDRNQLIGRTDHD---ILPGEQ 68 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDI 519 + LD V + E ++ D ++ + R +S G + DI Sbjct: 69 ADRIVSLDRIVLSTSEGHELEEQITTPDGTQRTLLTKKRCVSIPAGSTQEKFVVVTIVDI 128 Query: 520 TEQKKSLEGILCNAFQ 535 T +++ E + + Sbjct: 129 TNLRRTEETLRASEEH 144 >gi|170746830|ref|YP_001753090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170653352|gb|ACB22407.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 801 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 143/723 (19%), Positives = 271/723 (37%), Gaps = 19/723 (2%) Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 + L + ++I + + Sbjct: 57 FWGIVSHAYLSGLAVAVTALCAVAMIAMRRYRGRLGDRSIAREAFAVLHGLALGRGLAWA 116 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 ++ S+ + I + + G + L + A + Sbjct: 117 SMPAILLPSVDNAYRIVVGAVCAALISHAYVAGPIFS-LSLLAVAPVVAGIFVGLAGCES 175 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTV--IQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 + + + + V Q + + G G+ D + Sbjct: 176 PVGEYVAVLLSLYAAFVFVSARRMCRHSYQRLCDRVMVQAQSETIGFLLKDFAEGTSDWL 235 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRR 476 W+ D V +A +LG+ + + L + + + + + R Sbjct: 236 WETDTVGRLRQARAAVAALLGVEVAGLRHRTLSELLRAFADPDGDGADAQAVAAAIAARA 295 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 R+R A W+ + +P+ ++ G Y G+ +D TE +++ I A D Sbjct: 296 PFRDRTIRLRTAVGT-RWITLNGKPVFDAQGAFTGYRGVGSDTTESREAQARIAFLAGHD 354 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +LTG+PNR F D L L + + +D+D +K +ND G VGD +L ++T Sbjct: 355 SLTGLPNRSGFQDALG-TLCRAVRTAERPSALFYLDLDGFKAVNDSRGHLVGDRLLRAVT 413 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 R+ + + L RL G+ F +++ A + + P + E + V Sbjct: 414 ARLLAIGEPH-SLFRLGGDEFAMVVRDLGRP-AAEALAARVVAELRRPFQIDEARLEVGV 471 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA 714 S+G A + + +L A+LA+Y AK G +F + D+ A Sbjct: 472 SVGIAYMPDDAVEPASLLMRADLALYAAKADGKGCWRTFDPSLEERVVRQRQFDLDMRAA 531 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 + E+ L Y P++ + + G EAL++W+ P +G +S E + IAE I I + Sbjct: 532 LAAGEMELHYQPLVDMRSGRVAGFEALLRWNKPGYGWVSPGEIIPIAETTGFIVEIGRWA 591 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 L R D +W + I +NI+S + + A++ +T +P R+++ +E Sbjct: 592 LRRACTDARTW------SDLKIAVNISSIHVRMPGFHAEVAAVLRETGLAPDRLEIEITE 645 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892 SV++ + L RLR G+ + LDDFGT S LSYL PFD VK + S + Sbjct: 646 SVLLDHGPEVLENLKRLRATGVRIALDDFGTGYSSLSYLTEFPFDKVKVDRSFVRDLQGR 705 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 +++A++ +I MA+ + ++ + + + L CD Q + + + L Sbjct: 706 PEKVAVVEAIARMARALSMSVTVEGVETRQQLDVLRDKRCDIAQGFLYSPARPVHEVAAL 765 Query: 953 LKE 955 + Sbjct: 766 IAR 768 >gi|46201681|ref|ZP_00208207.1| COG2202: FOG: PAS/PAC domain [Magnetospirillum magnetotacticum MS-1] Length = 842 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 137/620 (22%), Positives = 270/620 (43%), Gaps = 13/620 (2%) Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + ++ + + L + + + + + Sbjct: 211 AGGIVGGGARELMGLRKDGSTFPLELSTTEVRLEGQRLFIGIGRDITERKLTEAALRESE 270 Query: 405 ERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 ER +V+ ++ D + ILGL + + +L I ++ Sbjct: 271 ERLRAIAANVPGMVFQRELRPDGSLSFSYVSEGCRAILGLGPEQLMDNPQLFLALIPEDE 330 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R +F L E V +D + W+ + RP + G+++ + G+ D+T Sbjct: 331 RQSFYAGLGRSARTM-EPFDEEMAVPGSDGRRRWLRGQSRPTLRAGGNVV-WDGVMLDVT 388 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + K + + + A+ D LT +PNR +FL+R + +A D V+ + +D+ IN Sbjct: 389 DSKLAEQRLSFLAYFDPLTRLPNRTAFLERFAAARETAARDQ-TMLAVVSVGLDRLGIIN 447 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 +G +GD VL++ + L D++AR SG+RF +++ + + D +R S Sbjct: 448 ATMGHGIGDQVLMAAGDLLRAALSPNDVIARTSGDRFLVLITGLGSKREAMDALDRLRGS 507 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699 + ++ V+A++G A + ++KNA+ A+ AK +G + F Sbjct: 508 AHATVAAAGQDFDVSAAMGAALYPRDGEDPETLIKNADAALQLAKAQGPASFQMFTKEIS 567 Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + ++ L A+E+ EL Y P + L +VG+EAL++W+ P G +S +F+ Sbjct: 568 ARAAKTLSLQTRLRRAIEHGELTAHYQPQVDLAGGNVVGMEALVRWNSPDLGMVSPVDFI 627 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQAL 817 +AEE +I I FML R W+ + I + +N++ + L + Sbjct: 628 PVAEESGLIDGICEFMLWECTRQNKQWQTEGL-SAIPVAVNVSGRQFQYARRLLSACERA 686 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +++ +ES M + + + +++ +L+++GI+ ++DDFGT S LS L P Sbjct: 687 LVDNHLDSRWLEVELTESSAMRDADNAIVVVNQLKEMGIACSIDDFGTGYSSLSVLKRFP 746 Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S + + AI+ +II MAK + ++A+ + + + L +GCD I Sbjct: 747 IAKLKIDRSFVLDVTTDPNDAAIVDAIIAMAKALRLKVVAEGVEHQAHLDFLRNLGCDQI 806 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + PL + LL E Sbjct: 807 QGYFFSRPLPAEGMRALLAE 826 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + I +LG A+ +M + L +H DRD + + EFR A Sbjct: 49 WFSASIRAVLGFAAEAMGVNSQGCLHAVHWADRDAHLAEIRRSAA-DLDTCREEFRAITA 107 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ--DNL 538 + W+ P +G +L + G+ D+T+ +++ + D+L Sbjct: 108 HGEVRWLKGAAEPRRQEDGSVL-WDGVMVDVTDGRRAELRLEMLMDHAGDSL 158 Score = 58.4 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHI 458 R + + +GD + + + + G + G N L +H Sbjct: 141 RRAELRLEMLMDHAGDSLIVVETDGTIDSVNAAAEALFGWTMAELAGRPFNTLLPQSLHH 200 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D + G G E D + + + + +IGI D Sbjct: 201 DD---LLESAEVSAGGIVGGGARELMGLRKDGSTFPLELSTTEVRLEGQRL--FIGIGRD 255 Query: 519 ITEQK 523 ITE+K Sbjct: 256 ITERK 260 >gi|126659446|ref|ZP_01730580.1| hypothetical protein CY0110_20780 [Cyanothece sp. CCY0110] gi|126619282|gb|EAZ90017.1| hypothetical protein CY0110_20780 [Cyanothece sp. CCY0110] Length = 721 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 128/552 (23%), Positives = 251/552 (45%), Gaps = 30/552 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFR 465 + V S + + + P + ++ R Sbjct: 183 LASVVELSPIPIIEINNQGVITYLNPSANLKF-------------------PDLEKAQVR 223 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L + + +R D + I ++ DIT++K++ Sbjct: 224 HPLLKGLIEKANYNNGSLVIREVDIKDQSFEQHIHYLTKEK----LIRSYIFDITQRKQA 279 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + +AF D+LTG+ NR F ++ + + L ++ IDID +K IND LG Sbjct: 280 EMQLKYHAFHDSLTGLANRAFFDQHISLTIKNCERYNKL-LAILFIDIDNFKNINDTLGH 338 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +GD +L +R+ ++ D++ R G+ F +IL + + A FA + K+ P+ Sbjct: 339 GIGDRILNCFAQRLTSQVRKSDLVCRWGGDEFVVILSEIQDPDQSAKFAKRLLKTFEHPL 398 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703 + +I + SIG A + + +LKNA+ A+ K G NH + + ++ Sbjct: 399 TIERNQIYLKCSIGIACYPEDGKNAEILLKNADAALSRTKESGRNHYQFYNPEMSLEIAE 458 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 ++ L A++N EL L Y P I + ++ GLEAL++W P G + ++F+ IAE+ Sbjct: 459 NFALETQLHQAIKNEELILHYQPQINIKTGQVYGLEALVRWKSPNLGLVGPNKFIPIAEK 518 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 +I + ++L+ + W+ Q +PP+ + +N++++ L +L + ++ ++ Sbjct: 519 TGLILPVGEWVLKTACQQNKKWQ-QMGLPPVRVAVNLSAQQLQQPDLIKTVEKILDLVGL 577 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P ++L +ES++M N + L LR +G+ +++DDFGT S L YL PFDT+K Sbjct: 578 EPQWLELEVTESILMKNTTLASQTLHELRNMGVYISMDDFGTGYSSLGYLKKFPFDTLKI 637 Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + + I+I+ +I+ +++ +IA+ + + + L ++ C+ +Q + Sbjct: 638 DQSFVRELNQNPEDISIISAIMTLSRGFNMRVIAEGVENQEQLNLLQQLDCEEMQGYFFS 697 Query: 942 SPLGFNSILKLL 953 PL +L L Sbjct: 698 HPLTQEEVLNYL 709 >gi|170742697|ref|YP_001771352.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] gi|168196971|gb|ACA18918.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] Length = 797 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 152/762 (19%), Positives = 291/762 (38%), Gaps = 47/762 (6%) Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWH 279 + + + L+ + G L S + + + H Sbjct: 51 AAAVLTTSSAIWATHFIAMLAFAPGMAFGFALAPTVASFAVAVMLVSLAALAIVGSRTRH 110 Query: 280 AKVGYITFSGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER-- 336 V G+A + M+ Y T + +A VL + Sbjct: 111 GAVAGGALIGLAIAGMHYTGMAAYRVQGTIAWDGQRVAVSVLAGIALSVLALRLSLAPQR 170 Query: 337 -------AVLLIPAWILIFIWFIGLWMAITKRLD---NDIIQPALVGGLVLIVILIGFTV 386 LL+ FI L + R+ + + LI Sbjct: 171 LARALAPLALLLAVCGAHFIGMGALSLRYDPRIALPDGSLDAAVVTILTANAAFLILGAA 230 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + + + ++ +R + + + D V I ILG + Sbjct: 231 LAALRLSILNHRRRVAERQRLRDLADIAVEGLLICD-DDAIVGVNRSIERILGRGREEVI 289 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G + R +R A + + + ++ Sbjct: 290 GRAL-------PDLLPGLSAAAIPLTHERDAT------LRDASGAEIPVRVIAQTIAIET 336 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL---SATDDN 563 + D ++ ++ I A D LTG+ NR F L +L + D Sbjct: 337 RP--HLVVAVRDQRDRLRAEAAITHLAHHDALTGLANRLRFNGVLAELLAERFAARRHDP 394 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++++D+D++K +ND LG +GDD+L + +R+ ++ D++ARL G+ F I+L Sbjct: 395 APFALLILDLDRFKAVNDTLGHGMGDDLLRRVAQRLLRVVGAADVVARLGGDEFAILLAG 454 Query: 624 ENNSLKIADFAIAM------RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++ D A + ++ P + + + ASIG A T ++L++A Sbjct: 455 AGDAAGAGDLAAIQAAAERAIEILSRPFVIDGHILDIGASIGIALAPQDGDTPEQLLRSA 514 Query: 678 ELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LA+Y AK G F +++ R ++ DL A+ E L + P + Sbjct: 515 DLALYGAKEEGRGRFRMFEGTMNARMQARRSLELDLRRALARQEFELYFQPQVDARTGRF 574 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 G EALI+W HP+ G +S EF+ +AEE +I + ++L + W P+ Sbjct: 575 DGAEALIRWHHPERGLVSPGEFIPLAEETGLIGPLGEWVLRTACAEARRWA-----TPLP 629 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ D L ++ ++++T SR+++ +E +M + R+ +L LR +G Sbjct: 630 VAVNLSPVQFRDPRLAATVRGILAETGLPGSRLEIEITEGTLMQDEHRTLAVLTELRGLG 689 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 I +++DDFGT S LSYL PFD +K + S + + +AI+R+I + +++ Sbjct: 690 IRISMDDFGTGYSSLSYLRRFPFDKIKIDQSFVRQTPQDRDSVAIVRAIAMLGRSLGIKT 749 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + + + GCD +Q + P+ SI +L + Sbjct: 750 TAEGVETDQQSVFIAGEGCDQLQGYLYSRPVPAESIAELFRA 791 >gi|83591951|ref|YP_425703.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] gi|83574865|gb|ABC21416.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 1061 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 148/596 (24%), Positives = 262/596 (43%), Gaps = 9/596 (1%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 + L G +++ + + + S AV S V D Sbjct: 467 SVALSRLFGHADALLLPTNPRASVITFVDITERKASEAALRKLSRAVEQSPASVIITDAR 526 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 P G S + G L HI + + + R + E Sbjct: 527 GTIEYVNPQFEKSTGYRSWEVIGANPRILKSGHIA--EATYAEMWKTLNEGRE-WRGELH 583 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 R D +W + P+ + G + + DIT +K++ ++ A D LT +PNR Sbjct: 584 NRRKDGTLYWEYASLSPVKDRRGRTTHLLAVKEDITARKETENRLIRQANFDELTDLPNR 643 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 RL + + ++ V+ ID+D +K +ND LG AVGD +L ++ +R+ E+ + Sbjct: 644 SLCYSRLKEAIVEAEATASI-VGVLFIDLDHFKNVNDSLGHAVGDKLLTAVAQRLREVAR 702 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D L+R G+ F ++L N S A A+ ++A P ++ REI + ASIG + Sbjct: 703 PGDTLSRQGGDEFLMLLPDLNGSEAGHGVAQAILTALAPPFSIDGREIYMAASIGITFFP 762 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYL 722 +++E+L+NA+ AMY AK G N + F + R+ I+ L A+ + EL + Sbjct: 763 RDGRSAAELLRNADSAMYTAKESGRNAICFFSPEMEIRAAQRLAIEGALRQALAHEELRV 822 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P++R D +G EAL++W P G +S +EF+ +AEE +I I ++L++ + Sbjct: 823 AYQPLVRTSDARPIGAEALLRWTSPTLGEVSPTEFIKVAEETGLIVPIGAWVLDQAVAEA 882 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 R + I +N++ + +L + + + + + ++L +ES+++ Sbjct: 883 ARLRAE-GYGAFQIAVNVSVRQFRGGDLAGLVSDTLKRHDFPAAGLELELTESLLLDVTP 941 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILR 900 L L +G+ L+LDDFGT S LSYL PFD +K + S + + A+ R Sbjct: 942 AITTTLQSLSALGVRLSLDDFGTGYSALSYLKTFPFDILKVDRSFIRDISSAPDSGALAR 1001 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +II MA+ + I + + E CD +Q + + ++L E+ Sbjct: 1002 AIIAMARGLGLATIVEGVETEEQCAFARAEDCDIMQGFLFGKAMTPADLRRMLDEK 1057 Score = 53.0 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 3/113 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + E G+ ++ D T+LG + + G + L + Sbjct: 321 RRALLREREDMRAITDTMGEGLYILDNEGLIAFVNRSAETMLGYSREDLLGAKAHSLFHS 380 Query: 457 HIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 H D +D + + RR + ++ + +R P++ + Sbjct: 381 HDGDGRPQDADACAILRAMRERRHFTSSDEAFIRSNGTRFPVEVRCAPLTADD 433 >gi|163848521|ref|YP_001636565.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|163669810|gb|ABY36176.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] Length = 1099 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 125/470 (26%), Positives = 226/470 (48%), Gaps = 11/470 (2%) Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D + M + +LR I + I + + + D LTG+PNR Sbjct: 617 DGALAIFHTQTDWMPERDQSLLRVITDLLNLIADHTRLNAQLHYQVRYDPLTGLPNRHLL 676 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +R+ L + + ++ ID+D +K++ND LG +GD L +++ ++ D Sbjct: 677 QERIELALRDARERRHT-VALLFIDLDGFKQVNDSLGHPIGDRFLKHVSQAFAACVRPQD 735 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 L R+ G+ F +++ ++ A + ++ P +E+ +TASIG + + Sbjct: 736 TLGRMGGDEFLLLMPDLPDARLADIAAQRLLDALQTPYIHEGQELRLTASIGISLFPRDG 795 Query: 668 ITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S +LKNA+ AM+ AK R G S R+ ++ L A+E +L + Y Sbjct: 796 VDSVTLLKNADSAMHRAKEFKRSGFLHYRPEHSRRAHTRLALEVQLRRAIERQQLIVYYQ 855 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P L+ E++ +EAL++W HP+ G I EF+ IAEE +I I ++L R ++W Sbjct: 856 PQYDLVTEQVASVEALVRWHHPQRGLIPPGEFVPIAEESDLIIEIGSWVLREACRQAMAW 915 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 P + I IN++++ LL E + A++ + + ++L +E V++ +P + Sbjct: 916 HKA-GYPLLRISINVSARQLLRPEFVSEVAAILHSSGLPANWLELEITEGVMLDDPIYAA 974 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE------KRIAIL 899 + +LR++GI + LDDFGT S L+YL + D +K + + + E A+L Sbjct: 975 RQIDQLRQLGIRIALDDFGTGYSSLAYLRQLRLDALKIDQAFVRAIDEQSNMVTNSRALL 1034 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 R+II +A ++ +IA+ + L MGCD +Q A PL + + Sbjct: 1035 RAIINLAHSLGLAVIAEGVETPEQRSALISMGCDILQGYLFAHPLPADEV 1084 Score = 59.6 bits (143), Expect = 3e-06, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 42/222 (18%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRD------RVTTTPDIATILGLASGSMHGPIRNW 452 ER L V+ + D V D + + G A+ + G Sbjct: 380 QVEERLRLLESVVIHTNDAVLILDAEPLYSPGPFIRYANAACSRLTGYATHELIGRS--- 436 Query: 453 LPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L +H L + R+ ++ E + W+ + + P+++ G Sbjct: 437 LRILHGPATDVMSLQTLWQAMEQRK-PIRLELLYYTRIGEPIWVDLSLSPVTDDYGQTTH 495 Query: 512 YIGIANDITEQKKS----LEGILCNAF---QDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +I + DI+ QK + + A +T + R L +++ Sbjct: 496 FIALHRDISAQKLAAFLEHDRSEILALLLQHSPVTTVLTR------LVELIERQRPHW-- 547 Query: 565 RPTVMVIDIDKYKKINDVLGIAVG-DDVLVSLTRRIGELLKF 605 ++ + ID G A + L+ R+ ++ Sbjct: 548 ---LVWVGID---------GHATASSERLLDEAERLEARIRQ 577 Score = 53.8 bits (128), Expect = 2e-04, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 3/110 (2%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + +I+ DI T+L ++ R++ +H ++ L Sbjct: 23 LECIAEIIVILDIDHTIRFVNQSFITLLDYEPIALLN--RHFCELVHPDESTAVEQHLSQ 80 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + R++ D + +R G I + DIT Sbjct: 81 LTVGQYQSQPLRVRLQHHDGSWRIFELRSCNRQQHPG-INGIVLSGYDIT 129 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 R L + + V D V A + G+ + + L Sbjct: 258 IEAERRLHLQVHVLSQINEAVIVTDRSGAIVYLNDMAAYLYGVNPAEVLDQPLSRLFVAE 317 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +T+ + + + G + E R D + + + I P+ + + + Sbjct: 318 PL---PAQTVEWNPLSHTPG-WRGELLHRLPDGRTIIVDVSIDPLHHDELANGGTLIVVR 373 Query: 518 DITEQKKSLEGILCN 532 DIT +K+ E + Sbjct: 374 DITSRKQVEERLRLL 388 Score = 38.4 bits (88), Expect = 5.6, Method: Composition-based stats. Identities = 11/144 (7%), Positives = 38/144 (26%), Gaps = 7/144 (4%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGL-ASGSMHGPIR 450 + S + + ++ + + P A I G+ + Sbjct: 131 LLAADYALRSHHVCYRQLLELAPMMIIISSLPDGIIRYCNPAGARIFGVNTPEELLNRPI 190 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 D + + + + A D+ + ++ + + G+ Sbjct: 191 TEFL---AADEHAIMWQRRQALRNGQPLPPMLYHIYARDHVVRAVEVQGVLIEGA-GEPQ 246 Query: 511 RYIGIANDITEQKKSLEGILCNAF 534 + D+T++ ++ + Sbjct: 247 -VLSFGYDVTDRIEAERRLHLQVH 269 >gi|254718428|ref|ZP_05180239.1| diguanylate cyclase GGDEF domain-containing protein [Brucella sp. 83/13] gi|306838854|ref|ZP_07471684.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] gi|306406052|gb|EFM62301.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] Length = 703 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 245/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V + ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREVILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAIVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + + A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMAHIAMHDSLTGLPNRAYFAHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L + D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLKQGSDCD--PFALFYLDIDHFKNVNDSISHQAGDQLLQEVVLRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFGQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|265983393|ref|ZP_06096128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella sp. 83/13] gi|264661985|gb|EEZ32246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella sp. 83/13] Length = 709 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 245/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V + ++Q ++ V V+ D+ V Sbjct: 118 VVFDGREVILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAIVFAQHDRMVMRRREVLSVERKVERKDGTS 234 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + + A D+LTG+PNR F + Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMAHIAMHDSLTGLPNRAYFAHHV 294 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L + D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 295 GSLLKQGSDCD--PFALFYLDIDHFKNVNDSISHQAGDQLLQEVVLRLRQITTADQFIAR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 530 ---DIKVSVNLSPVQFGQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694 >gi|226944938|ref|YP_002800011.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii DJ] gi|226719865|gb|ACO79036.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii DJ] Length = 834 Score = 489 bits (1258), Expect = e-135, Method: Composition-based stats. Identities = 146/769 (18%), Positives = 295/769 (38%), Gaps = 33/769 (4%) Query: 210 YMVNRSSMLIPTFAMAWVVL---GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266 + ++ + +++ V + + + + S E I L++ + Sbjct: 66 FRMHGNRVILMVSCTFLGVAISDFSHMLSYSGMPDFLGPNSPEKAIGFWLLARCLTALGV 125 Query: 267 IFLFMY---LHWNRWHAKV----GYITFSGIACIAILFCMSFYYPMVTA-------SIAR 312 + + L + A + + + + + + +P + + Sbjct: 126 LIIACLPWRLEVSGRSAAIDPDRWRVLLVTLCAMVSIHLVLLLFPEILPRTYQEGVGLTE 185 Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372 + R + L+ + + M + A Sbjct: 186 FKRGVEFSIIAIHAASIVLLSVRRRRDMGLEKGLLICSLLVMMMGEFFFTIYSDVTDAYN 245 Query: 373 GGLVLIVILIGFTVIQHVLATGYFS--QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + I+ + + + + + + + + + DI+ + + ++ Sbjct: 246 IFGHIYKIIAYLVLYRAIFVESILAPYKFLEDSRQHVEVLMGALPDIILEARLDGLLLSA 305 Query: 431 T-PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 P + G + D + + +G R R Sbjct: 306 HVPTDGKLFG---EKKPKAGDYLQDRLPSQAMDCLTGAMRAAESGGQGT---GLRFRTGK 359 Query: 490 N-QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 + + ++ + ++ + D+TEQ ++ I A D LTG+PNR F Sbjct: 360 GAEELVFDVSASLLAQRSDRSSHFVILIRDVTEQARNQSKIEQMAHFDALTGLPNRTLFN 419 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 ++ +D+D +K +ND LG VGD +LV L R+ ++L+ D+ Sbjct: 420 TCFDVEATRC-EKQRQPLALIFMDLDNFKNVNDSLGHKVGDALLVELAARLEKVLRPRDM 478 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 ++R G+ F +L E + +++S+ +PI + + + V+AS+G + Sbjct: 479 VSRQGGDEFMFLLP-EADVRTAEQMTECIKRSVEVPIQVGQYTLHVSASMGICMFPQDGR 537 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHP 726 + +A++AMY AK +H F + + L AV+ +L + Y P Sbjct: 538 DLETLSSHADIAMYRAKQERRSHYAFFSEEMQACAARSLLLEGALREAVQWGQLDVYYQP 597 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + ++ G EAL++W HP+ G IS +EF+ IAE I I +L R + + W Sbjct: 598 QFDITGRKLEGAEALVRWRHPELGFISPAEFIPIAEITGQIIKIGDLVLRRATQQMRHWL 657 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 D + I +NI+ D L E + ++++ P ++L +ESV M +PE+ Sbjct: 658 DAGLPGDMSIAVNISMAQFRDTALLEKIDTALAESQLPPWALELELTESVAMDDPEQVVD 717 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIP 904 ++ LR G+ L++DDFGT S LSYL + +K + S + + +I+++II Sbjct: 718 IVRSLRSRGVKLSIDDFGTGYSSLSYLKKLRVHKLKIDRSFIQAISSAGSDRSIVQAIIG 777 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +AK+++ IA+ I E + L +GCD Q PL + L L Sbjct: 778 LAKDLDMQTIAEGIETEEQRQLLEALGCDSGQGYLFCKPLPASEFLPAL 826 >gi|209523105|ref|ZP_03271661.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209496256|gb|EDZ96555.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 619 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 140/446 (31%), Positives = 245/446 (54%), Gaps = 6/446 (1%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +I +++ +L A D LTG+PNR F+D+L + + + + R V+ +D D++ Sbjct: 171 REILHHQQTQSKLLHMASHDALTGLPNRVFFMDKLMQAISQTKQNPDYRFAVLFLDCDRF 230 Query: 577 KKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 K +ND LG GD +L+SL RR+ L P LAR G+ F I+L + + + + A Sbjct: 231 KVVNDSLGHLTGDRLLISLARRLQLTLKMSPTNLARFGGDEFTILLENIESPQAVTNIAK 290 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 ++K++ P L ++++ + ASIG TS ++L++A++AMY AK +G F Sbjct: 291 RLQKALTWPFQLDDQDLFLEASIGIVIGTSEYTEPEQILRDADIAMYKAKSQGRGCYRVF 350 Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + R ++ +L LA+EN++ L Y PII L D ++G EAL++W HP+ G IS Sbjct: 351 DGTMHDDAHRRFQLENELRLAIENNQFVLNYQPIIELADGSVIGFEALLRWHHPEHGIIS 410 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCE 812 +EF+ IAE+ +I I L++L++ + + W+ + + +N++ K L E Sbjct: 411 PAEFIPIAEDTGLIIPIGLWVLDQAVKQLNEWQKKGLITHGFRMSVNLSVKQFTQPYLIE 470 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ K + +KL +E+ ++ NPE +R LL +L I L+LDDFGT S LSY Sbjct: 471 EIDRILVKNNFQSCYLKLEITETAIVENPEAARQLLQQLTHRNIHLSLDDFGTGYSSLSY 530 Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + S +T G+ + + I+ +II +A ++ +++A+ I + +L + Sbjct: 531 LHRFPVNTLKIDRSFITCIGTPNENLQIVDAIITLAHQLQISVVAEGIETAEQLAKLRSL 590 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GCD Q + + P+ LLK+R Sbjct: 591 GCDQGQGYYFSKPVESIIAENLLKQR 616 >gi|27383267|ref|NP_774796.1| hypothetical protein bll8156 [Bradyrhizobium japonicum USDA 110] gi|27356441|dbj|BAC53421.1| bll8156 [Bradyrhizobium japonicum USDA 110] Length = 828 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 140/568 (24%), Positives = 243/568 (42%), Gaps = 30/568 (5%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457 + L G+ + + +R+ G + Sbjct: 266 ELKQREASFRLLFDGNPVPMIVCALDDERILGVNDAAVAHYGYSRTEFEKL--------- 316 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512 + DS + R E R AD + I R ++ + Sbjct: 317 ---KIRSLQAFDSEPPWTTDRSSDEQAARTWKHVKADGALIDLAIYSRELTYAE-RPAVL 372 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + DITE+K++ + A D LTG+PNR ++ +L + + V+++ Sbjct: 373 LALM-DITERKRAEARLAFMAQHDGLTGLPNRNLLRQQVDEMLLHTRRSSE-KVAVLMLG 430 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K +N+ LG AVGD +L + +R+ L+ D LARL+ + F I+ Sbjct: 431 LDNFKAVNETLGHAVGDKLLRGVAKRLRSTLREEDALARLNSDEFAIVQSGLTRPEDAVM 490 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + ++IA P L + + ASIG A + S ++LK+A++A+ AK Sbjct: 491 LAKRLLEAIADPYLLDGHSVVIGASIGIAMAPADGDDSEKLLKSADMALSRAKLDARGTF 550 Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F + R I+ +L A++N L Y P+I L I G EAL++W H + G Sbjct: 551 AFFEAALHAKAQSRRKIEVELRDAIQNDVLRPYYQPLIDLSSGRITGFEALVRWPHAERG 610 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 +S +EF+ +AEE +I + ML R D +W D + + +N++ L Sbjct: 611 MVSPAEFIPVAEETGLINPLGGLMLRRACLDAATWPD-----DVRVAVNLSPLQFRSGNL 665 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + + P R++L +E++++ + L LR +G+ +++DDFGT S L Sbjct: 666 LSMVTDALKHSGLPPRRLELEITETLLLEKSAQVLATLHALRALGVRISMDDFGTGYSSL 725 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL PFD +K + S + R AI+RSI+ + K + TI A+ + E ++ L Sbjct: 726 SYLRSFPFDKIKIDQSFVRDLGANREAQAIIRSIVSLGKGLGVTITAEGVETEAELSCLR 785 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956 GCD Q + I+ LL + Sbjct: 786 AEGCDEGQGFLFSKARPNIEIISLLAAQ 813 Score = 42.2 bits (98), Expect = 0.42, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 37/157 (23%), Gaps = 21/157 (13%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++Q ER AV + D V + I + Sbjct: 132 LVQSRAEAEAAIIEARKSHERLRQAVDLLPQGIVILDPEGRYVLWNKQYSEIYSKTADLF 191 Query: 446 -HGPIRNWLPYI------HINDRDNFRTILDSFVG---YRRGRLQYEFRVRAADNQFHWM 495 G + + + + + R + +D + + Sbjct: 192 AEGARLEDTLRVGVARGDYPEAAGHEEEWIAQRLEKLYQPGARHEQTL----SDGRVILI 247 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R +G +G+ DITE K+ Sbjct: 248 EER----RTDDG---GVVGLRVDITELKQREASFRLL 277 >gi|126668294|ref|ZP_01739253.1| Two-component response regulator [Marinobacter sp. ELB17] gi|126627211|gb|EAZ97849.1| Two-component response regulator [Marinobacter sp. ELB17] Length = 848 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 135/564 (23%), Positives = 242/564 (42%), Gaps = 19/564 (3%) Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGP--IR 450 +R L + S + V D V P + G G + Sbjct: 287 ERKKAEDRMRLLERGIEASPNGVVMLDASVQDYPMVYVNPAFTEMSGYQPKEAIGKGYLV 346 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + R+ L+ L Y + W + I P+ + G+ Sbjct: 347 LFGKGTAPEALRLIRSALEHQEECEITLLSY-----RKNGSTFWKKLTITPVYDGRGECT 401 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 YI D+T Q KS E + A D +TG+PN + F L+ + + ++ Sbjct: 402 HYIAAQQDVTRQLKSEELLDYQARHDPVTGLPNHRLFEAHLSQVFVRA-RGKTSDMVLLY 460 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D +K +N+ LG VGD +L + R+ LL D+L RL+ + F I+ + ++ Sbjct: 461 VDLDDFKSLNESLGRQVGDLLLAVVADRLRNLLANDDVLTRLAADEFVIMRPALQAEAEV 520 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A M +A ++ + ++++ASIG AS S E+L NA LA+ AK +GGN Sbjct: 521 KMLASQMLTCLAEAYDIKGQRLSISASIGIASDDGSVEQPKELLDNAALAVREAKRQGGN 580 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 ++ + ++ +L A+E + + Y P++ + EAL++W+HP Sbjct: 581 TFCWNHGAASTAGTEQVIMRCELMEAIEARQFVVYYQPLVEAKTGRLRSAEALVRWNHPA 640 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + F+ +AE+ I AI ++L + D+ Q + I +NI+ Sbjct: 641 RGLLLPGAFISLAEQTGQIVAIGRWVLHQACMDMAQRWRQTGQ-AVSIAVNISPLQFRRP 699 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 E + + A++ + P ++L +E V++ +++ +L LR +G+ + +DDFGT S Sbjct: 700 EFIDDVLAVLEASGLPPELLELEVTEGVLLSGIDKAISMLESLRDLGVQVAIDDFGTGFS 759 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL +P VK + S + T R AI++ +I MA ++ ++A+ I Sbjct: 760 SLSYLRQLPITKVKLDRSFIIDVTTDRGSAAIVQGVITMAHHLGLLVVAEGIETVEQQNY 819 Query: 927 LTRMGCDYIQDSHVASPLGFNSIL 950 L CD +Q + P+ Sbjct: 820 LAASDCDLLQGFLYSRPVPLGQFA 843 Score = 68.4 bits (166), Expect = 6e-09, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 5/149 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + S +R D V++ + V P I G Sbjct: 155 AGLAALAIEHHAERDRRVSSEQRYRSLFSQHPDCVFEIGLDGRFVDCNPAAEVISGYGRD 214 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G ++ + D L + YE A + ++ + P+ Sbjct: 215 QLVG--EHFSKVLLPEFYDVANEAL--ILMAGGESHSYEIAGLNASGEAIFVDVINLPIV 270 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532 +GD+ GIA DI+E+KK+ + + Sbjct: 271 -VDGDVRGGYGIARDISERKKAEDRMRLL 298 >gi|91791445|ref|YP_561096.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91713447|gb|ABE53373.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Shewanella denitrificans OS217] Length = 941 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 150/569 (26%), Positives = 263/569 (46%), Gaps = 27/569 (4%) Query: 399 GIFSDGERQSLAVLGSGD--IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453 + + R V D I + DI + +P I ILG + + G +L Sbjct: 365 QLKNSENRYRGLVESLQDEYIFYQHDIQGEIQYVSPSITHILGHKALNFRGSYNKYLTSN 424 Query: 454 --PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 ++ + +E + +H + RPM N + + Sbjct: 425 KNNLAIPE-------LILRCIKGEHVP-PFEIEIMDIKGAYHTFEVLERPMYNEQNECIG 476 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 GIA+DITE+K+ + + D LT + NR F L + + + ++ + Sbjct: 477 CEGIAHDITERKQHQRKLYRLSHFDKLTNLANRYLFTLSLGQAITSAKALNQT-FALLFL 535 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+ ++K IND LG + GD +L R+ E L DILAR G++F I+L E++ + Sbjct: 536 DLTRFKIINDNLGHSAGDKLLQQAALRLTEQLNSQDILARFGGDKFCILLP-ESDEKQAE 594 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGN 690 A+ + K +A P + E+ + IG + + ++ +LK A+ A+Y AK R G Sbjct: 595 AVALTLIKILAQPFEVYEQSFILGCRIGISLFPTNGHDPETLLKQADAALYVAKKRPAGF 654 Query: 691 HVESFRVSSFRSDRVMIKEDLCLA------VENSELYLVYHPIIRLMDEEIVGLEALIQW 744 S + + R+ +++ L LA E+ EL VY + +L D + G EALI+W Sbjct: 655 AFCSEEQAVYNQRRLKLEQGLRLALSKSSFDESFELSAVYQSLNQLPDAGLAGFEALIRW 714 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G IS EF+ IAEE +I ++ +ML ++ R + W + +N+++ D Sbjct: 715 VHPELGPISPMEFIPIAEETGLIFELSRWMLTKVCRQLKEWHQLGFDFK-RVSVNLSALD 773 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L++ L E + LI + P +K+ +E+ +M PE+S L +L GI + +DDFG Sbjct: 774 LININLAEEIINLIEEAGAEPRWLKIEITETALMAAPEQSISTLQQLVGNGIHVAIDDFG 833 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL +P ++K + S + + + A+++++I MA ++ + A+ + + Sbjct: 834 TGYSSLAYLKSLPATSLKIDQSFIRNIMTSIEDQAVVKAVISMAHSLGKKVTAEGVETQE 893 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951 + L CD Q A PL +K Sbjct: 894 QLDFLITRHCDLAQGYLFAKPLIAQDCVK 922 >gi|330505758|ref|YP_004382627.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328920044|gb|AEB60875.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 949 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 137/604 (22%), Positives = 274/604 (45%), Gaps = 10/604 (1%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 + + + G V + + + + + Sbjct: 346 RVRHVDGHWVWVED-RGRAVERDAAGRVRRMLGTRRDVSARRQQEQQQRLAATVFEAASE 404 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 ++ D + +++ G +S + G R I + ++ + Sbjct: 405 GIFILDPYYRVLAVNRAFSSVTGYSSEEVVG--RTVTSLIGSREMRRQYQMIRQELD-SS 461 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 G Q E + + +++ + +++G +G D+T ++++ E + + D Sbjct: 462 GTWQGELIETRKSGELYPQWLQLNLVRDTSGRPSHIVGFFADLTARREAEERLRYLSHYD 521 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LTG+ NR F +RL + ++ ID+D++K +ND LG V D +L ++ Sbjct: 522 ELTGLANRSLFKERLHEASQRARQSGR-SIALVHIDLDRFKLLNDSLGHEVADQLLRQMS 580 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 RR+ + + D +ARLSG+ F +IL + + +A A + + +P+ + E+ V+A Sbjct: 581 RRLTQAVPEADCIARLSGDEFAVILDAYGSLSSLARVASRLLAKLRVPMTVGGHELVVSA 640 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLA 714 S+G + S ++ A +A+ HAKH GGN + F + R+ ++ L A Sbjct: 641 SLGISLLPDYAREISALISQANMAVQHAKHLGGNTFQFFTDNLQACTLERLQLENQLRKA 700 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 ++ +L + Y P + L D+++ EAL++W HP+ G ++ EF+ +AEE +I I F+ Sbjct: 701 IDEGQLEVFYQPKLNLADDQLNAAEALVRWRHPQQGMVAPGEFIGLAEETGLIAPIGEFV 760 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 L + + W+ Q I + +NI+ L L ++ ++ +T +P ++L +E Sbjct: 761 LRQACQQACEWQRQGLA-KIRVSVNISVYQLRQGNLTSLVRQVLDETGLAPHYLELELTE 819 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893 S ++ N + +LR++G+ L +DDFGT S LSYL P VK + + + + Sbjct: 820 SELLDNVDSVIATFRQLRELGVKLAIDDFGTGYSSLSYLKRFPVHYVKIDQTFIRDLSPG 879 Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + AI R+II MA ++E ++A+ + + + L CD IQ ++ P+ + +L Sbjct: 880 GEDAAITRAIIAMAHSLELKVVAEGVETQAQMDFLKSQNCDEIQGFLISRPVEAGAFAEL 939 Query: 953 LKER 956 L+ + Sbjct: 940 LRAQ 943 Score = 129 bits (324), Expect = 3e-27, Method: Composition-based stats. Identities = 55/391 (14%), Positives = 129/391 (32%), Gaps = 53/391 (13%) Query: 185 VNSFTLYRGIIIGVASLLAI---FLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241 + L++G + +L + + + + +L +++ ++ Sbjct: 19 ERTRLLFQGSRLPTLLMLLVGLACSLLLWSQQSAPLLAAWLGWVVLLVLLRLTQVNAFNE 78 Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301 + WR +S + F + G+ AIL Sbjct: 79 ALP-SRQAEPYWRRIFLFGAGASGLTLAFAVIVLVPADVFYQQALVYGLIAAAILSASVA 137 Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361 Y ++A ++ + + + ++ W L+ + + + + Sbjct: 138 YAVSLSAFLSFALPCLVPSAAFLLLADNSLQR---------GWGLLGVILFLALLIVAWQ 188 Query: 362 LDNDIIQPALVGGLVLIVIL-------------------------------------IGF 384 + N ++Q +L+ + ++ + Sbjct: 189 V-NRLVQRSLLQRFHNLALISNLEHAKQRAEGLNEELAREVEQRRRAERELRGAHGALEM 247 Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 V + L + + R +LA+ S +WDWD+ D+V + + + GL G Sbjct: 248 RVAERTLELDEATHALGKSQARLALALEASELGLWDWDLDSDQVHHS-HLRELFGLEPGQ 306 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-S 503 + +R+ P +H +D R L + R Q E+RVR D + W+ R R + Sbjct: 307 VQVMLRDLTPRLHPDDLPRLRRALVQHLKGRSEDYQIEYRVRHVDGHWVWVEDRGRAVER 366 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++ G + R +G D++ +++ + A Sbjct: 367 DAAGRVRRMLGTRRDVSARRQQEQQQRLAAT 397 >gi|91974641|ref|YP_567300.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91681097|gb|ABE37399.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 742 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 141/581 (24%), Positives = 241/581 (41%), Gaps = 38/581 (6%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + L + + + + G +S Sbjct: 180 ELKQREASFRLMFDSNPVPMIVCALRDERILAVNDAAVAHYGYSSVEFAQLTL------- 232 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512 +S + + E R AD + I R ++ NG+ Sbjct: 233 -----RRLQAFESDLPWAGDHTDDERAARTWKHVKADGSLIDLAIYSRQLT-YNGEPAVL 286 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + DITE+K++ + D LTG+PNR RL +L + + + V+ I Sbjct: 287 LALM-DITERKRAEMRLAFMTHHDGLTGLPNRNLLRKRLDELLVHTRRASD-KIAVLFIG 344 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 ID +K +ND LG A+GD +L + RR+ L+ D+LARL+ + F ++ +I Sbjct: 345 IDHFKAVNDTLGHAIGDKLLRGVARRLRSTLREEDLLARLNSDEFAVVQTGIRRPQEITL 404 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + +IA P L + ASIG A S ++L NA++A+ AK+ Sbjct: 405 LAKRLLNAIAEPYLLDGHSVVAGASIGIAVAPVDGDDSEKLLMNADMALSRAKNDSRGSF 464 Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F + + R I+ +L A+ N L Y P++ L I G EAL++W HP G Sbjct: 465 SFFEPGMDARAQARRKIETELRTALRNEVLRPYYQPLVELSSGRISGCEALVRWPHPDRG 524 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 IS +EF+ +AE+ +I AI +L + D W I + +N++ L Sbjct: 525 MISPAEFIPVAEDTGLINAIGAQVLRQACLDASRWP-----GDIRVAVNLSPLQFRVGNL 579 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + P R+++ +E++++ + L LR +G+ +++DDFGT S L Sbjct: 580 MATVMDALKYAGLPPHRLEIEITETLLLEKSSQVIATLHALRALGVRISMDDFGTGYSSL 639 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL PFD +K + S + + AI+R+II + + TI A+ + E ++ L Sbjct: 640 SYLRSFPFDKIKIDQSFVRDLCNNREAQAIVRAIISLGMGLGVTITAEGVETEAELSWLR 699 Query: 929 RMGCDYIQDSHVASPLGFNSILKLL--------KERFPLVK 961 GC Q ++ I LL ++FP + Sbjct: 700 AEGCHEAQGFLFSAARPNEEIKGLLDLQQSAAPDQQFPAAR 740 Score = 40.3 bits (93), Expect = 1.9, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 17/155 (10%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + A ER A+ + D + A I AS M Sbjct: 46 AAERERAVAQALAEARKSHERLREAIDLVPQGIVFLDSEGRYILWNKRYAEIY-KASADM 104 Query: 446 HGPIRNWLPYI--------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 P + + + + + ++ AD + + Sbjct: 105 FKPGARFQDTLRVGIARGDYPEAIGREDDWIAERMQRMFHPSHSHEQIL-ADGRCIQIEE 163 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 S+G IG+ DITE K+ Sbjct: 164 CTT----SDG---GVIGLRVDITELKQREASFRLM 191 >gi|170750741|ref|YP_001757001.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170657263|gb|ACB26318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 829 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 144/635 (22%), Positives = 255/635 (40%), Gaps = 33/635 (5%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ L A I + + R ++ +P GG + + + + Sbjct: 209 AALQWQRVGQLFPGAITARTIATLAAMVERGGRSAFELSRPRSDGGT--LYLKVEAGCVG 266 Query: 389 HVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDW-DIVRDRVTTTPDIATILGLASGSMH 446 +L+ G I + L + +W D + G + Sbjct: 267 DLLSVTMTDVGDIKAREASFRLLFENNPVPMWVVADARDRFLAVNDAAVAHYGYSREQFL 326 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ--FHWMIIRIRPMSN 504 D G L R AD + R P Sbjct: 327 SRA--------PADLAIAAEEATELGLPAAGSLH-----RRADGSAIEVSLFQRAMPFEG 373 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + A D+TE++++ I A D LTG+PNR F DRL + A D Sbjct: 374 RQ----AVLEAAIDMTERRRAEARIAHMAHHDALTGLPNRVLFRDRLGEAIARHARDGE- 428 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 ++ +D+DK+K +ND LG VGD +L RI L+ D++ARL G+ F I++ Sbjct: 429 EAVLLCLDLDKFKIVNDTLGHPVGDALLREAAERIAGCLRKDDLVARLGGDEFAILVRGM 488 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + + P L ++ + SIG A ++KNA+LA+Y A Sbjct: 489 DLPALADGLIARVIAELGRPFRLEGQDCHIGTSIGVACLPRDGTDPETLMKNADLALYRA 548 Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALI 742 K GG+ F + + + L A + LVY P++ + I+ EAL+ Sbjct: 549 KAEGGSTFRCFEPEMDAWVQARRRRENELREAFARGQFSLVYQPLMDARSDRILAFEALL 608 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G +S +EF+ +AEE +I I ++++ + +W + I + +N++ Sbjct: 609 RWHHPEHGPVSPAEFVPLAEETGLIVPIGAWVMQTAFAEAATWPET-----IRLAVNLSP 663 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L E ++ ++ T P R++L +ESV++ + + L LR +GI + +DD Sbjct: 664 IQFRNRTLVETVRGALAATGLDPRRLELEITESVLLADSAANLATLHALRDMGIRIAMDD 723 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL PFD +K + S ++ E AI+R++ + ++ A+ + Sbjct: 724 FGTGYSSLSYLRSFPFDKIKLDRSFVSQVGENTHCTAIVRAVASLGTSLGIATTAEGVET 783 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L G D +Q + + +L+ Sbjct: 784 PEQLAMLRAEGYDEVQGFLFSRAVPGPEARRLIDR 818 >gi|289672478|ref|ZP_06493368.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 561 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 151/570 (26%), Positives = 271/570 (47%), Gaps = 13/570 (2%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + AV S + + P I +S + G L + Sbjct: 1 RAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSELP 57 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 58 ALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIYE 117 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID +K Sbjct: 118 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNFK 174 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +IND LG GD +L+SL RR+ L D+LAR + N F +++ + + A + Sbjct: 175 RINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQV 233 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 234 LATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTE 293 Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 294 ALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRPD 353 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 354 QFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSIA 412 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 413 AILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLKK 472 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + S + E + I ++I MA N++ ++A+ I + L R CD Sbjct: 473 FPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRCD 532 Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963 Q P+ +++ LK R+P + Sbjct: 533 VGQGYLFDRPIPGEELIEKLK-RYPRRPSA 561 >gi|254496498|ref|ZP_05109372.1| hypothetical protein LDG_1047 [Legionella drancourtii LLAP12] gi|254354281|gb|EET12942.1| hypothetical protein LDG_1047 [Legionella drancourtii LLAP12] Length = 505 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 129/454 (28%), Positives = 238/454 (52%), Gaps = 6/454 (1%) Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 + I I DIT++ + + A D+LTG+PNR LDRL +LD + N Sbjct: 51 DKKITGRIWSFRDITQRVILEKQLKYQATHDSLTGLPNRVLMLDRLGHVLDKAKR-QNTL 109 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 V+ D+D++K IND +G GD++L ++ +R+ +L+ D LARL G+ F +I+ + Sbjct: 110 FAVIFFDLDRFKLINDSIGHDTGDELLKTVAKRLEFMLRGTDTLARLGGDEFIVIVDNIK 169 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 N A + +S + + ++V +S G + + T E+L+NA+ AMY AK Sbjct: 170 NEFDAGTVATHLLESFNSNFEIAGQSLSVCSSAGISIFPRDGKTIGELLRNADAAMYQAK 229 Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 + GGN + + + ++ +++ +L AV N+E + Y P + ++I +EALI+ Sbjct: 230 NSGGNQFQFYTAELGTQIKEKFVLENELHDAVLNNEFMIYYQPQFDITTQKISSVEALIR 289 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+HPK G + +F+ AEE +I I + L+ W+D P+ + +NI+ K Sbjct: 290 WNHPKRGILLPIDFIPAAEETGLIIPIGEWTLKTACEQNKKWQDA-GFLPMRVAVNISLK 348 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + + + ++ ++ T SP+ ++L +E+V++ E + L L +GI +TLDDF Sbjct: 349 QIKQFDFVQKIKGILDSTGLSPNWLELEITENVLLNAIELALSSLPELYAMGIHITLDDF 408 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S ++YL IP D +K + S ++ I++SII +AK + I+A+ + + Sbjct: 409 GTGTSSINYLRKIPLDRLKIDQSFISNINLNTSDEVIIQSIISLAKKLNLKIVAEGVETQ 468 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ L C+ +Q + + P+ + + +L+ Sbjct: 469 KQLEFLQSNHCEEVQGFYFSKPVAPSELELILQR 502 >gi|114776847|ref|ZP_01451890.1| hypothetical protein SPV1_11546 [Mariprofundus ferrooxydans PV-1] gi|114552933|gb|EAU55364.1| hypothetical protein SPV1_11546 [Mariprofundus ferrooxydans PV-1] Length = 529 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 129/543 (23%), Positives = 247/543 (45%), Gaps = 21/543 (3%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D + P T+ G ++ + G + + L + + ++ Sbjct: 3 TDHAHRIIRVNPAFTTLTGYSAERITGSLASELYLL-PEGMEREVLKKEAVWSGNVS--- 58 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 ++ + + + + +G + RYI I K + D T Sbjct: 59 ----IKKENGEILQGLQTTVSTTVEDGGLARYIHII-------KPADAATQEGSYDQNTN 107 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +P+R F L + + + + V+ IDID +K IND G G+ +L + R Sbjct: 108 LPDRNMFQHILAQEQENAKR-KHFQLGVLYIDIDHFKVINDSFGYLKGNLLLGQVAERFK 166 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 LL+ D++A L GNRF ++L + + + +++ + E+ +T S G Sbjct: 167 ALLRGNDLIASLGGNRFVVLLTGLAHPEDATIVTLKLMQALESGFCIDNHEVVMTISTGI 226 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENS 718 A + S +L++AE +MY K GGN+ + F+ S+ +R+ ++ ++ A+E Sbjct: 227 AIFPGDGDDSEALLQSAEQSMYSVKADGGNNYQFFKASTQSSAINRLNMESEMRKAIERG 286 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 E L Y P I +VG+EALI+W HP+ G I F+ +AEE MI I +++ Sbjct: 287 EFVLHYQPQINATSGHVVGMEALIRWQHPERGMIPPYHFISVAEETGMIVPIGEWVMYEA 346 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 R +W D + + +N++++ D +L + ++ + ++ +P+ ++L +ESV+M Sbjct: 347 CRQNKAWHDAGLAE-LKVAVNLSARQFSDRKLLDKVRHALKQSGLNPAFLELEITESVIM 405 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896 + E + LL + +G+SL +DDFGT S L+YL P D +K + S + S+E Sbjct: 406 KDIEATIALLEEIASMGLSLAIDDFGTGYSSLNYLKRFPIDKLKIDKSFIDDVISSEDDG 465 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I+ +II ++ N++ +I + + L C+ IQ + + PL + ++ R Sbjct: 466 KIVEAIIGLSHNLKLNVICEGVEDAEQFAWLQERQCNEIQGYYFSKPLPADEFEAFVRSR 525 Query: 957 FPL 959 + Sbjct: 526 NAI 528 >gi|291571153|dbj|BAI93425.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 619 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 144/446 (32%), Positives = 248/446 (55%), Gaps = 6/446 (1%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +I +++ +L A D LTG+PNR F+D+L + + + + R V+ +D D++ Sbjct: 171 REILHHQQTQSKLLHMASHDALTGLPNRVFFMDKLMQAISETKQNPDYRFAVLFLDCDRF 230 Query: 577 KKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 K +ND LG GD +L+SL RR+ L P LAR G+ F I+L + +++ + A Sbjct: 231 KVVNDSLGHLTGDRLLISLARRLQLTLKMSPTNLARFGGDEFTILLENIHSTQAVTVIAE 290 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 ++K++ P L E+++ + ASIG TS ++L++A++AMY AK +G F Sbjct: 291 RLQKALTWPFQLDEQDLFLEASIGIVIGTSEYTEPEQVLRDADIAMYKAKSQGRGCYRFF 350 Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + R ++ DL LA+EN+ L Y PII L D ++G EAL++W HP+ G IS Sbjct: 351 DGTMHNDAHRRFQLENDLRLAIENNHFLLNYQPIIELQDGSVMGFEALLRWHHPEHGIIS 410 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCE 812 +EF+ IAE+ +I I L++L++ + + W+ + + P + +N++ K L E Sbjct: 411 PAEFIPIAEDTGLIIPIGLWVLDQAVKQLNLWQKKGLITPQFRMSVNLSVKQFTQPYLIE 470 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ K + S +KL +E+ ++ NPE +R LL +L I L+LDDFGT S LSY Sbjct: 471 EIDRILVKNNFQSSYLKLEITETAIVENPEAARQLLQQLTHRNIHLSLDDFGTGYSSLSY 530 Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + S +T G+ + + I+ +II +A ++ ++A+ I + +L + Sbjct: 531 LHRFPVNTLKIDRSFITCIGTPNENLQIVDAIITLAHQLKINVVAEGIETAEQLAKLRSL 590 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GCD Q + + P+ LLK+R Sbjct: 591 GCDQGQGYYFSKPVESMMAEDLLKQR 616 >gi|330504863|ref|YP_004381732.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328919149|gb|AEB59980.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 715 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 141/647 (21%), Positives = 276/647 (42%), Gaps = 21/647 (3%) Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 + M+G R L +IF+ I R + ++ V+ Sbjct: 76 VARLMRGNPRTRLTP----IIFVSAIAQTHDAVLRGYSSGAVDFVLKPFDPSVLRHKIHS 131 Query: 387 IQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + Q + ER + + + + P +A +L Sbjct: 132 LLEHEHNRCELQALSQQLERARAFNASVLANAAEGILVVGEDGRIQFANPAMAQMLDGEV 191 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + G ++R + +E +R + + P+ Sbjct: 192 GDLEGVELLSFLKNPASERGWLESEFYLHFKREATYRVHEAMMRTFKGGCLPVALSCSPL 251 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + IA D++ + + A D+LTG+ NR+ F L + L Sbjct: 252 PLQQ---RAMVVIALDMSVVRNLHAQLESQAVTDSLTGLLNRRGFHQALESALARIERSG 308 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 R V+ +D+D +K+IND LG VGD +L + ++ L+ D LAR+ G+ F +L Sbjct: 309 Q-RVAVLYLDLDGFKRINDSLGHDVGDQLLRRVGEQLKACLRPYDSLARIGGDEFTALLD 367 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + A A + + +++ L + T+ AS+G A + + +L++A++AMY Sbjct: 368 NLGHPEDAAKVAEKLIELVSVRHTLDGVDFTLGASVGIACFPECGQSVEGLLRSADMAMY 427 Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G F R+M++E L A+EN + LVY P +L + G EA Sbjct: 428 EAKRAGRQQYRFFSPEMNGRARSRLMLEESLRHAIENDDFVLVYQPQFQLESGRLRGFEA 487 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W H G ++ + F+ + EE +I + ++ AR + ++ Q + + +N+ Sbjct: 488 LLRWQHRVAGTVAPNVFIPLLEETRLINRLGEWIFREGARQLADFKQQFG-EDMVLSLNV 546 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + +L +Q ++ PS++++ +ES +M + E ++ L LR++G+ + + Sbjct: 547 SPVQFGMPQLVTDLQRVLDAHGLKPSQLEVEVTESALMQDLELTQAQLRHLRELGVKIAI 606 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL + DT+K + ++ + + A++ +II + +++ +IA+ + Sbjct: 607 DDFGTGYSSLAYLRHFELDTLKIDRLFISNMLDSPRDAAVVSTIIDLGRHLGLEVIAEGV 666 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE----RFPLVK 961 + K LTR C+ +Q VA + S +++ + R PL + Sbjct: 667 ETQEQRKWLTRHNCNIMQGFLVAPGIPAGSAMQVPAQLDWNRLPLPR 713 >gi|160898227|ref|YP_001563809.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160363811|gb|ABX35424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Delftia acidovorans SPH-1] Length = 828 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 134/574 (23%), Positives = 265/574 (46%), Gaps = 11/574 (1%) Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + E + S D ++ D D T P +LG Sbjct: 236 FRDITAEAQTQAGLELAARVFESSLDGIFIADGYMDVARTNPACERLLGGMPVQGRTVES 295 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + + + L ++ G + + +R A + + P+ N+ GD++ Sbjct: 296 LFEAS---EGQADTLGDLARIQWHQGGFWEGDLWLRQAGGARCAVRLSWVPLRNAQGDVV 352 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + IG D+T+Q+ + + I A+ D LTG+PNR + +R+ ++ +A +++ Sbjct: 353 QSIGFMRDLTQQRVAQQRIEQLAYSDALTGLPNRLNLTERVDAAIE-AARAGGTVFSILF 411 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D++K IND LG GD VL + +R+ + ++ DIL RL G+ F + L N + Sbjct: 412 IDLDRFKIINDSLGHQFGDRVLKLVAQRLSDCMRPVDILCRLGGDEFVLYLQGCN-AELA 470 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + + + P L +V SIG A + + +T E+++ A+ AMY K RG Sbjct: 471 ASVARRILQEMERPFLLDGLGFSVQCSIGVAQYPADGLTLDELIRQADTAMYRVKERGRG 530 Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 H ++ R+ ++ + A+E+ + + + P + + + IV EAL++W P+ Sbjct: 531 HFSFYQPQMSAGLLSRMKLEHAMRQALEHGRMAVYFQPQVHIDSDRIVAAEALLRWTDPE 590 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 +G +S F+ +AEE I + +++E+ ++ W+ Q PI + +N+++ + + Sbjct: 591 FGVVSPGVFIPLAEESGYIVTLGAWVMEQAVQEAARWQQQG--MPIKVSVNVSALEFRQS 648 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 E + L+ +P ++L +ES+++ + + L + ++ +G+ + +DDFGT S Sbjct: 649 GFVERVTELLRSYGLTPQLLELELTESILLQDAQDMALRVCQIADLGVGMVIDDFGTGYS 708 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL +P +K + S + G E AI+ +II + + I+A+ + + Sbjct: 709 NLAYLKKLPISKIKIDQSFVRGLPSDEGDQAIVGAIISLGLALGVEIVAEGVETHEQLTA 768 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 + RM Y Q A L + L+ + + Sbjct: 769 IHRMQGHYFQGFLCAPGLPREQFGECLQAQRAGI 802 Score = 42.6 bits (99), Expect = 0.33, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 8/156 (5%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + S + + D + D AT+ G+ Sbjct: 104 VLLVSMLDRREQALHEAEFESLLGELRATLESAADAILVCDPDGRIRAFNHRFATLWGIP 163 Query: 442 SGSMHGPIR-NWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + L ++ D +++ L +R D + + R Sbjct: 164 EALLVRRNDVAILDHLASQVRDAESYARQLKLLSAQPLMEAADVLDLR--DGRI--LERR 219 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 P G + I DIT + ++ G+ A Sbjct: 220 AVPQL-RRGLPMGRIFSFRDITAEAQTQAGLELAAR 254 >gi|222526455|ref|YP_002570926.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Chloroflexus sp. Y-400-fl] gi|222450334|gb|ACM54600.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Chloroflexus sp. Y-400-fl] Length = 1099 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 125/470 (26%), Positives = 226/470 (48%), Gaps = 11/470 (2%) Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D + M + +LR I + I + + + D LTG+PNR Sbjct: 617 DGALAIFHTQTDWMPERDQSLLRVITDLLNLIADHTRLNAQLHYQVRYDPLTGLPNRHLL 676 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 +R+ L + + ++ ID+D +K++ND LG +GD L +++ ++ D Sbjct: 677 QERIELALRDARERRHT-VALLFIDLDGFKQVNDSLGHPIGDRFLKHVSQAFAACVRPQD 735 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 L R+ G+ F +++ ++ A + ++ P +E+ +TASIG + + Sbjct: 736 TLGRMGGDEFLLLMPDLPDARLADIAAQRLLDALQTPYIHEGQELRLTASIGISLFPRDG 795 Query: 668 ITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + S +LKNA+ AM+ AK R G S R+ ++ L A+E +L + Y Sbjct: 796 VDSVTLLKNADSAMHRAKEFKRSGFLHYRPEHSRRAHTRLALEVQLRRAIERQQLIVYYQ 855 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P L+ E++ +EAL++W HP+ G I EF+ IAEE +I I ++L R ++W Sbjct: 856 PQYDLVTEQVASVEALVRWHHPQRGLIPPGEFVPIAEESDLIIEIGSWVLREACRQAMAW 915 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 P + I IN++++ LL E + A++ + + ++L +E V++ +P + Sbjct: 916 HKA-GYPLLRISINVSARQLLRPEFVSEVAAILHSSGLPANWLELEITEGVMLDDPIYAA 974 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE------KRIAIL 899 + +LR++GI + LDDFGT S L+YL + D +K + + + E A+L Sbjct: 975 RQIDQLRQLGIRIALDDFGTGYSSLAYLRQLRLDALKIDQAFVRAIDEQSNMVTNSRALL 1034 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 R+II +A ++ +IA+ + L MGCD +Q A PL + + Sbjct: 1035 RAIINLAHSLGLAVIAEGVETPEQRSALISMGCDILQGYLFAHPLPADEV 1084 Score = 59.6 bits (143), Expect = 3e-06, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 42/222 (18%) Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRD------RVTTTPDIATILGLASGSMHGPIRNW 452 ER L V+ + D V D + + G A+ + G Sbjct: 380 QVEERLRLLESVVIHTNDAVLILDAEPLYSPGPFIRYANAACSRLTGYATHELIGRS--- 436 Query: 453 LPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L +H L + R+ ++ E + W+ + + P+++ G Sbjct: 437 LRILHGPATDVMSLQTLWQAMEQRK-PIRLELLYYTRIGEPIWVDLSLSPVTDDYGQTTH 495 Query: 512 YIGIANDITEQKKS----LEGILCNAF---QDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +I + DI+ QK + + A +T + R L +++ Sbjct: 496 FIALHRDISAQKLAAFLEHDRSEILALLLQHSPVTTVLTR------LVELIERQRPHW-- 547 Query: 565 RPTVMVIDIDKYKKINDVLGIAVG-DDVLVSLTRRIGELLKF 605 ++ + ID G A + L+ R+ ++ Sbjct: 548 ---LVWVGID---------GHATASSERLLDEAERLEARIRQ 577 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 3/110 (2%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + +I+ DI T+L ++ R++ +H ++ L Sbjct: 23 LECIAEIIVILDIDHTIRFVNQSFITLLDYEPIALLN--RHFCELVHPDESTAVEQHLSQ 80 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + R++ D + +R G I + DIT Sbjct: 81 LTVGQYQSQPLRVRLQHHDGSWRIFELRSCNRQQHPG-INGIVLSGYDIT 129 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 R L + + V D V A + G+ + + L Sbjct: 258 IEAERRLHLQVHVLSQINEAVIVTDRSGAIVYLNDMAAYLYGVNPAEVLDQPLSRLFVAE 317 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +T+ + + + G + E R D + + + I P+ + + + Sbjct: 318 PL---PAQTVEWNPLSHTPG-WRGELLHRLPDGRTIIVDVSIDPLHHDELANGGTLIVVR 373 Query: 518 DITEQKKSLEGILCN 532 DIT +K+ E + Sbjct: 374 DITSRKQVEERLRLL 388 Score = 43.4 bits (101), Expect = 0.22, Method: Composition-based stats. Identities = 12/144 (8%), Positives = 39/144 (27%), Gaps = 7/144 (4%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGL-ASGSMHGPIR 450 + S R + + ++ + + P A I G+ + Sbjct: 131 LLAADYALRSHHVRYRQLLELAPMMIIISSLPDGIIRYCNPAGARIFGVNTPEELLNRPI 190 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 D + + + + A D+ + ++ + + G+ Sbjct: 191 TEFL---AADEHAIMWQRRQALRNGQPLPPMLYHIYARDHVVRAVEVQGVLIEGA-GEPQ 246 Query: 511 RYIGIANDITEQKKSLEGILCNAF 534 + D+T++ ++ + Sbjct: 247 -VLSFGYDVTDRIEAERRLHLQVH 269 >gi|222054280|ref|YP_002536642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] gi|221563569|gb|ACM19541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. FRC-32] Length = 934 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 147/652 (22%), Positives = 277/652 (42%), Gaps = 17/652 (2%) Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 A+ +A + I G + + G + +++ Sbjct: 283 AKFYVALASFFGIILSILVVWLGMRYLTMPLLNMARHIRSMHGEPGKTS---PVEVLSED 339 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 +G L L + V + A ++ + V GD + D + Sbjct: 340 EIGELGLAFNDLLDRVGKEQEALREAVLTAKNERAKSEAIVAALGDGMSMVDTDFKVLYQ 399 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 T+ G G G +D + + + G + RV D Sbjct: 400 NKVHQTLAG---GEFIGSYCYQAF----EGKDAPCSGCPVAMSFADGLVHTAERVVERDG 452 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + ++ I P+ + +G I I + +I+ +K+ I AF D LTG+PNR+ F +R Sbjct: 453 EKLYLEITASPLFDYDGRINAGIEVVRNISRRKQMESAIEQMAFHDALTGLPNRRLFNER 512 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDIL 609 L + + +D VM +D+D +K IND LG +GD++L + R+ + D + Sbjct: 513 LAQAIAYAQRNDQF-LAVMFLDLDHFKDINDSLGHTIGDELLKEVATRLKRCGRRAEDTI 571 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 AR G+ F + L + A + + + P L E+ V+ SIG + + Sbjct: 572 ARQGGDEFLLFLSEIKDKEDAVHLAALLLQEMTAPFILSGYELFVSVSIGISIYPHDGRD 631 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPI 727 + NA++AMY AK +G N V + S +R + + L A+ ++L L Y P Sbjct: 632 VETLASNADIAMYRAKQQGRNSVNLYNHSMGEKNRQRLTVETSLRRAIGKNQLVLHYQPQ 691 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + + +I+G+EAL++W+HP+ G + + F+ AEE +I + ++LE A +W+D Sbjct: 692 VSVHSGKIIGMEALVRWNHPEQGLLLPTSFIPQAEETGLILDLGEWVLETAAAQNKAWQD 751 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 PP+ I +N + + L + E + + +T ++L E+V+ + Sbjct: 752 A-GYPPVKISVNYSQRQLRQQDFVEKLLKSLKQTGLEARWLELEIREAVMAEGIMDNLQA 810 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905 L LR +G+ + +D+FG S L LG P D +K + S ++ + + AI ++ + Sbjct: 811 LAALRDVGVRIAIDNFGAGYSCLKQLGDFPLDALKIDLSFVSQISSSEVKKAIAGTVASL 870 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 AK + ++IA+ + + ++ L +G +Q ++ ++PL LL Sbjct: 871 AKGLHLSVIAQGVETKEQMQLLCSLGYGEMQGNYFSNPLPAEEAGLLLSREN 922 >gi|115522120|ref|YP_779031.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] gi|115516067|gb|ABJ04051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 750 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 141/566 (24%), Positives = 245/566 (43%), Gaps = 26/566 (4%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457 + L + + + +R+ G + Sbjct: 187 ELKQREASFRLLFDANPVPMIVCALDSERIIDVNDAAVKHYGYSPADFRSLTIG------ 240 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRV---RAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D F D + R AD + + R ++ + G + Sbjct: 241 --DLQAFEA--DRPWTGDHSNDECTARTWKHVRADGTLIDLAVYSRQLTYA-GQPAALLA 295 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + DITE+K++ + D+LTG+PNR S +L +L S + + + ID Sbjct: 296 LM-DITERKRAEMRLAFMTQHDSLTGLPNRNSLRKKLDQMLVSSRRSTE-KIALHFLGID 353 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K +ND LG AVGD +L S++RR+ L+ D++ RL+ + F I+ N + A Sbjct: 354 NFKAVNDSLGHAVGDKLLRSISRRLRSTLREEDVIGRLNSDEFAILQSGVQNPEDVVLLA 413 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + +I P L + V+AS+G A + S ++ +A++A+ AK+ Sbjct: 414 KRLLHAIGEPFILEGHSLVVSASMGIAMVPTDGDDSEKLFMSADMALSKAKNEARGSYSF 473 Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + + R I+ +L A+++ L Y P+I L I G EAL++W HP+ G + Sbjct: 474 FEPGMDARAQTRRKIEFELRQAIQHDVLRPHYQPLIGLNSGRITGCEALVRWPHPERGLV 533 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S +EF+ +AEE +I + +L R D +W D + I IN++ L Sbjct: 534 SPAEFIPVAEETGLINPLGTQVLRRACLDAAAWPD-----DVRIAINLSPLQFRVGNLLS 588 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + + ++ SP R++L +E++++ + L LR +G +++DDFGT S LSY Sbjct: 589 VVMDALKQSGLSPKRLELEITETLLLEKSSQVIATLHALRALGARISMDDFGTGYSSLSY 648 Query: 873 LGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L PFD +K + S + G + R AI+RSII + + TI A+ + E ++ L Sbjct: 649 LRSFPFDKIKIDQSFVRGVCDNRELQAIVRSIISLGMGLGVTITAEGVETEAELNWLRAE 708 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GC Q + I+ LL + Sbjct: 709 GCHEAQGFLFSPARPDAEIVDLLAAQ 734 Score = 47.6 bits (112), Expect = 0.011, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 17/155 (10%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 V++ A ER A+ + D + A I ++ Sbjct: 53 VVRKRAAVDAAKAEARKSHERLREAIEVLPQGIVFLDAEGRYILWNKKYAEIYSRSADLF 112 Query: 446 HGPIR---NWLPYIHINDRDNFRTILDSFVGYRRGRL-----QYEFRVRAADNQFHWMII 497 +R + D ++++ R L + E R+ +D ++ + Sbjct: 113 KPGVRMADTLRVGVERGDYPEALGREEAWIAERIAELFHPGKRLEQRI--SDGRWIQIEE 170 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R+ ++G IG+ DITE K+ Sbjct: 171 RMT----ADG---GIIGLRIDITELKQREASFRLL 198 >gi|332529483|ref|ZP_08405441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hylemonella gracilis ATCC 19624] gi|332041003|gb|EGI77371.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hylemonella gracilis ATCC 19624] Length = 986 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 137/553 (24%), Positives = 237/553 (42%), Gaps = 16/553 (2%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFV 472 S D + D I G G + +H F L + + Sbjct: 426 SHDGMMIADANGVIERVNSAFTRISGYTPEEAIGKTPKLLQSGLHE---PAFYQALWTAL 482 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R G E R + + I ++++ G LRYIG DIT ++ + Sbjct: 483 K-REGHWHGEVVNRHRQGHLYTARLTITEVTDAGGRTLRYIGNLQDITAERDARALAERL 541 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 D LT +PNR DR+ + L + VM+ID+D ++K+ND LG +GD +L Sbjct: 542 RLFDPLTNLPNRLQIEDRMRSHLLDQDLESPTADAVMMIDLDLFQKVNDSLGHVIGDQLL 601 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGII-----LISENNSLKIADFAIAMRKSIAMPINL 647 + + RRI + + D + R SG+ F I+ + + + A ++R++I P+ L Sbjct: 602 IEMARRISLIAREGDTVGRFSGDSFVIVAQHLGPDRQETAQRAQALAESVRRTIEAPVML 661 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706 + TAS+G + + +L+ AELAMY K G N V F + Sbjct: 662 DGHRLVCTASVGITLSSGPRSDPGTLLRQAELAMYKCKKEGRNTVRFFEEAMQTEINRRR 721 Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 ++ +L A+E +L L Y + + +G EAL++W HP+ G + S+F+ +AEE Sbjct: 722 DLEHELREAIEREQLVLHYQLQVDAQ-GQPLGAEALVRWAHPRRGLVPPSDFIPLAEETG 780 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I+ I + L + W D+ + + +NI+ + + + + I + Sbjct: 781 LIEPIGQWALSTACHQLARWADRPETHHLTMAVNISPRQFKSPTFVDDVVSKIRRAGIPA 840 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++KL +ES + + S L LR G ++LDDFGT S L+YL +P +K + Sbjct: 841 DKLKLEVTESTAIDEFDVSMSKLQALRTCGFMISLDDFGTGNSSLNYLTKLPLTQLKIDK 900 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + + + + ++II M + + +IA+ + E L GC Q P Sbjct: 901 SFIDDLPASHRDAMVAQTIIAMGRGLGLDVIAEGVETEAQHHFLVEQGCQAFQGYLFGRP 960 Query: 944 LGFNSILK-LLKE 955 + LL + Sbjct: 961 QAVEAFEASLLAQ 973 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 14/193 (7%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387 + R L I ++ + +G + RL ++ + Sbjct: 230 WFSQPFQYRPYLRIAMMAVLLVLGLGAAGGLWIRLLRRSVKHRTAE------------IR 277 Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 +Q + + + S D + + +L L + G Sbjct: 278 YKHQQLEAAAQQLRVERALLRAIIESSPDAMMLKSPQGVYLDCNAGALELLKLGREELLG 337 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + D +F D V + LQYE +A D + + + ++ Sbjct: 338 KTDE--QLLDDPDFVHFIRGHDQEVLHGGKPLQYETTFKAQDGSTRNLEMVKVLVHDAQA 395 Query: 508 DILRYIGIANDIT 520 + I DIT Sbjct: 396 APAGILTIGRDIT 408 >gi|50121361|ref|YP_050528.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043] gi|49611887|emb|CAG75336.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043] Length = 722 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 132/580 (22%), Positives = 245/580 (42%), Gaps = 15/580 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ L + R S D + + +LG + Sbjct: 152 ASLVMDKLEMRRLELARKASQVRFENIANTSPDTILCVNEKGMITFWNTAAEHMLGYSDE 211 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + I + L + + E V+A + + + Sbjct: 212 DIIGRN---INTIVPDAFIVQLNHLVTDRDSLMKGVMLELNVQAKSGSLVPVELSVS--M 266 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + D + Y I DITE++++ E + A D LTG+ NR L T L + Sbjct: 267 WEDNDNVSYGAILRDITERRRNEERLFLLAHMDPLTGLANRTLLTSNLETALK-----NE 321 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +M++D+D +K +ND LG + GDD+LV + ++I ++ D++AR+ G+ F ++ Sbjct: 322 PAVCIMMVDLDGFKDVNDSLGHSSGDDILVHVAKKIKAAVRSGDVVARMGGDEFALLFPG 381 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ A + I+ + + + +I ++ASIG + +T ++L +A+LA+Y Sbjct: 382 LSDKKVAGKIAEQIIHEISQAMIIDDHQINISASIGAVLYPDYGLTVQDLLTSADLALYQ 441 Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N F + L A E E + Y P ++L EIVG EAL Sbjct: 442 AKSEGRNCYRFFTRELLEVFQAKHAFQLEFVRAYEQHEFEMFYQPQVKLATNEIVGAEAL 501 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G + + F+ E + I +++E + W Q + I IN+ Sbjct: 502 LRWRHPERGLLGPAAFLTALENGPWAERIGDWIVETACKQAAEWC-QTSDKYFRISINLF 560 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 S L + + +++T PS ++L +E++++ E L LR+ GI + D Sbjct: 561 SAQFRTGLLAQKIMDTLARTGLEPSSLELEITENIILRYDENMLQPLKMLREAGIGIAFD 620 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 D+GT + LS L P +K + + + + AI+R+I+ + K+ +IA+ + Sbjct: 621 DYGTGYASLSMLKNYPVTRLKIDQTFVRTMCESPPDAAIVRAILYLGKSFGLGVIAEGVE 680 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + L GC+ Q P+ +LLK P+ Sbjct: 681 TLEQSERLRGKGCEEAQGYLFGHPMPAEEFTQLLKLNKPI 720 >gi|312879196|ref|ZP_07738996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Aminomonas paucivorans DSM 12260] gi|310782487|gb|EFQ22885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Aminomonas paucivorans DSM 12260] Length = 948 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 127/588 (21%), Positives = 240/588 (40%), Gaps = 19/588 (3%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG----SGDIVWDWDIVRDRVTTTP 432 + L+ + + + + + Q + + +W D + P Sbjct: 369 MRSKLLSDGTVMSLFRDLSEREEAQARLQEQQSLLEALFANAPFELWVRDAKGRMLLQNP 428 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQ 491 G++ G + R +R + R + E R + + Sbjct: 429 LARK----GQGNLLGEAVEEHRGLSEETRRLWRETNRKVLAGDVIQREEMEIR----EGR 480 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + I P+ G + +G++ D+TE+K + I AF D LT +PN + F L Sbjct: 481 EICLYKVIAPIW-REGKVRGILGVSLDVTEEKVQAQQIERMAFYDALTDLPNLRLFNAHL 539 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 L + D ++ +D+D +K +ND LG A+GD LV + RI +L + AR Sbjct: 540 EERLA-AVRDGGEGGALLFLDLDDFKLVNDSLGHALGDQFLVEVAARIRTVLGPDRLAAR 598 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F ++ + A + P ++A++G A + + Sbjct: 599 LGGDEFLVLSAPGEGCRDVDILANELLGLFEAPFEQGGVRQFLSATLGVACFPEDGLYPE 658 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729 +L A++A++ AK G + ++ L A+E EL + + P + Sbjct: 659 ALLAQADMALHKAKREGKRSFRFYDAALQEEVVKSRELENHLRDALEAGELEVFFQPQVG 718 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 + + LEAL +W P G IS F+ +AE +I + +L R Q Sbjct: 719 VSSGRVEALEALARWHSPTLGQISPGRFIPVAERSGLIVPLGALVLREACRFAAGLEAQG 778 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P + + +N++++ LL + E ++ +T +PS +++ +E+ +M + +R L Sbjct: 779 L-PSLRVAVNVSARQLLQEDFAETTLRVLEETGLAPSLLEVEITETTLMESFDRVSETLR 837 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKN 908 LR+ G+ + LDDFG S L+YL +P DT+K + S + S E I R+++ + + Sbjct: 838 HLREKGVRVALDDFGMGYSSLTYLRRLPLDTLKIDRSFIVDSRREGNRVITRAMVRLGHD 897 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + ++A+ + E CD IQ + PL + L + Sbjct: 898 LGLEVVAEGVETEEHRAFADEAECDVIQGYWYSRPLPPEEVRAFLSRQ 945 Score = 73.8 bits (180), Expect = 2e-10, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 75/252 (29%), Gaps = 16/252 (6%) Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340 KV Y+ + +A + ++ ++ +L Sbjct: 164 KVSYVASLPEIRCVLGTGAYVLDLDRALRAHLRGVALTGSFILILGLFISLR-----ILS 218 Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400 + +A + + G ++L F + L + Sbjct: 219 PLLKSYSVLLEAMRGLARDPQKPPTLSLEGFREGSESWLLLSAFLDMDRRLRETGAQ--L 276 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 D ER + V + D + D V T ++G + + H +D Sbjct: 277 LQDEERLRILVEEAPDGFLELDGDSRVVRTNRRFCELMGASPEDLLSRPVE--ELFHPDD 334 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + + R G + E R+ + +R + + S+G ++ + D++ Sbjct: 335 LITTPLVYEEVL--RGGVVTRERRLLRPWGAPLRVEMRSKLL--SDGTVM---SLFRDLS 387 Query: 521 EQKKSLEGILCN 532 E++++ + Sbjct: 388 EREEAQARLQEQ 399 >gi|295400569|ref|ZP_06810547.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] gi|294977472|gb|EFG53072.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] Length = 824 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 132/593 (22%), Positives = 247/593 (41%), Gaps = 20/593 (3%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + LV + V ++G Q + +R + + + Sbjct: 239 MWISFLVFLVWEAVYILGVYAQIGRKLFAKHKQELEVSEKRFKRLSEMTAEGIIVH-AHG 297 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + + G + + N R + ++ Sbjct: 298 KVIEANKAACQLFGYVEKEIIHMPIQ--DLVIPESLKN---------AGRCQEGKCAIQL 346 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R D + ++ + + + DITE+K S E C A D+LTG+PN++ Sbjct: 347 RRKDGTIFNAEV-VQYEYDYGANKKVNVAAIRDITERKNSKEKRQCIAVHDDLTGLPNKE 405 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 + + + ++ VM+++I K IND G +VGD VL+ + + Sbjct: 406 ALHRAIAKKIQEASCL-REEVAVMLLEISGMKTINDFYGYSVGDQVLLRVVEEWKKRCDE 464 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 +L R +GN F +L K A + + P+ + E+ V IG + + Sbjct: 465 SILLGRWNGNEFIAVLSGST-KEKAKALANQLSEIADEPVVVDGLELYVMIKIGISQYPK 523 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLV 723 + +++ A++A Y + + F R + I +++L A+E E L Sbjct: 524 DGTDAKTLIRKADIARYKLRQNAASQFLFFEKPMTREIQEKIATEQELRRALEREEFVLY 583 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P I+L + G+EALI+W+HP+ G IS F+ +AE+ MI IN +++ + Sbjct: 584 YQPQIQLDTGMVTGMEALIRWNHPEKGLISPYAFISVAEQTGMIIPINEWVIRMACQQTK 643 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 P + + +N++ + + + L+ +T P + L +E + M + E+ Sbjct: 644 QLLKDF--PNLSVSVNLSPYEFENRRFVHKLVKLLEETGIPPHHLDLEITERMTM-DTEK 700 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903 + +L RL+ IG+++++DDFGT S LSYL +P D +K + S + K+ AIL +II Sbjct: 701 AIAILKRLKSIGVTISMDDFGTGYSSLSYLTALPIDRLKIDRSFVRNIHGKKEAILPAII 760 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + NI ++A+ + E ++ L CD Q + A PL + ++ L E Sbjct: 761 RLGHNIGVKVLAEGVETEEEVAYLKDKHCDEAQGYYFAPPLSYEELIVFLCEH 813 >gi|172039089|ref|YP_001805590.1| hypothetical protein cce_4176 [Cyanothece sp. ATCC 51142] gi|171700543|gb|ACB53524.1| hypothetical protein cce_4176 [Cyanothece sp. ATCC 51142] Length = 699 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 147/613 (23%), Positives = 273/613 (44%), Gaps = 28/613 (4%) Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 + + I + I D Q ++ ++ +++ + D R Sbjct: 110 VSYYIISTSLDIDLFNPLDPGQLQQEEEAMIETMMADDNNKSTLISDESLQERDHDDLIR 169 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + S + + + D + P + H Sbjct: 170 LASFPELSPNPIIEIDFSGNLTYLNPAASIKF---------KTIGQDKLKHP-----VLA 215 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L S V +G L + AD ++ S ++R DIT +K++ Sbjct: 216 GLLSEVQNIQGNLLLREVMIGADIFEQYVH------YLSEHQLIR--SYLFDITARKQAE 267 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LT +PNR F ++L L + +++L ++ +D+D +K +ND LG Sbjct: 268 KNLEYRAFYDTLTDLPNRNYFDEKLEIALVKAKQNNHL-MALLFLDLDSFKNVNDTLGHK 326 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 +GD +L S RR+ ++ D+++R G+ F ++L N + A + + P Sbjct: 327 IGDQLLKSFARRLSSCVRNNDVVSRWGGDEFTLLLPQINTPEDTINLAQRILDDLKQPFE 386 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDR 704 + ++ + SIG A + + +LKNA+ A+Y AK RG NH +R ++S S Sbjct: 387 VSGHQLYIKTSIGIAIYPQDGEDTETLLKNADAALYRAKERGKNHYRFYRSTMTSKASLL 446 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + ++ L A+E L Y P +RL + +I G+EAL++W HP+ G +S + +AE+ Sbjct: 447 LKLENLLYKALEEEAFSLDYQPQLRLTNNKISGMEALLRWYHPELGQVSPLRLIPLAEKT 506 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I I+L++L+ + +W+ Q P I I +N+++K L + ++ +T Sbjct: 507 DLIIPISLWVLKTACQQNKAWQKQGL-PAIPIAVNLSTKQFQQPNLVNIVTQVLEETELD 565 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + L +E+ +M N + S+ L +LR IG+ ++LDDFGT L+YL P T+K + Sbjct: 566 PHLLDLEITETAMMENIDFSQETLQKLRDIGVQISLDDFGTGYCSLAYLQKFPITTLKID 625 Query: 885 GSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + + AI+ +II + K+ + +IA+ + ++ L R+ C IQ + Sbjct: 626 QSFIQTLQNNPANTAIISAIIGLGKSFDLRVIAEGVETLQQLEFLQRLHCQEIQGFWFSR 685 Query: 943 PLGFNSILKLLKE 955 PL L + Sbjct: 686 PLKPADATTFLSQ 698 >gi|218246195|ref|YP_002371566.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218166673|gb|ACK65410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 840 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 138/564 (24%), Positives = 260/564 (46%), Gaps = 13/564 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + +R L V + + + + + +LG + + G + L Sbjct: 279 EAKLTTGKDRYRLFVEQATEGILLVNCETQYIIEANQAYCHLLGYTTAEIIGLSLHQLIA 338 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 I D+ L S V E R D + +I + +I + + Sbjct: 339 I---DKAIIDQEL-SCVTSETPYFIKESIHRHKDGSLISVSGKINRTTYQGQEI--FCLV 392 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI ++K++ E + A D LT +PNR+SF +L LD + +L VM +DID Sbjct: 393 IRDIRDRKQAEEQLQYQALHDPLTNLPNRESFNQKLVLALDHAQRYQHL-MAVMFVDIDS 451 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 + IN+ LG ++GD +L S +R+ ++ D +AR + F ++L N+ A Sbjct: 452 FTNINNTLGPSIGDRLLDSFGKRLSSCVRTGDTVARWGSDEFVLLLPQIKNTEDTVKLAQ 511 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ +P L + + V SIG A + +LKNA A+ K +G NH + + Sbjct: 512 RIFDNLQVPFILDDHRLPVKCSIGIAVYPQDGEAGETLLKNAGTALGRTKEQGRNHYQFY 571 Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + S + + ++ L +E + +L Y P I L +++VG+EAL++W+HP G I+ Sbjct: 572 NPNLSSEAALLLRLESLLHQGLEKKQFFLHYQPQINLKTKKVVGMEALLRWEHPSLGIIN 631 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +F+ +AE+ +I + ++L+ ISW+ PPI I +N++++++ L E Sbjct: 632 PQKFIPLAEKTDLILHLGKWVLQTACEQNISWQKDGL-PPISIGVNLSAREVQQPNLAEV 690 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + +++ T P ++L +E + + ++R L L+ +G+ + LDDFGT S L YL Sbjct: 691 VARVLNDTGLDPQWLELELTEMSLRQHLTQARKSLRDLKNLGVRIALDDFGTGFSSLGYL 750 Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 F T+K + + + I+ + + ++K I+A+ + E +K L+ + Sbjct: 751 QQFSFRTLKLHQAFIRDLRGTSEELGIISAALAISKGFNMRIVAEGVETEEQLKILSNLN 810 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C+ IQ + PL L+ Sbjct: 811 CEEIQGYCFSRPLPVKEATVFLQN 834 >gi|197116513|ref|YP_002136940.1| HAMP domain-containing protein diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem] gi|197085873|gb|ACH37144.1| diguanylate cyclase/phosphodiesterase, HAMP domain-containing protein [Geobacter bemidjiensis Bem] Length = 721 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 132/450 (29%), Positives = 236/450 (52%), Gaps = 10/450 (2%) Query: 511 RYIGIANDITEQ----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + + ++I E+ ++ + A D LT +PNR F DRL L + Sbjct: 246 GFNEMLSEIEERNQILRQRQAHLQQLAHYDPLTRLPNRTLFYDRLAQALYQAERSRQA-L 304 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 +V+ ID+D +K IND LG GD +L+ + R+ +++ D +ARL G+ F I + N Sbjct: 305 SVIFIDLDHFKDINDTLGHRTGDLLLIEVASRLSTVVRSCDTVARLGGDEFTIFTQNVVN 364 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + A A + A P +L E EI VTASIG + T E+L NA++AMYHAK Sbjct: 365 AENAAIVAAKLNGLFAKPFHLGESEIYVTASIGVTLFPHDGKTVDELLMNADIAMYHAKA 424 Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + F ++ ++RV + DL LA+E E L Y P + L+ + +EAL++W Sbjct: 425 CGKNVYKMFDRKMNEHATERVTLLSDLRLALERDEFVLHYQPKVDLLTGNVTSVEALVRW 484 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G ++ +F+ ++EE I + ++L W++Q + + +N++ Sbjct: 485 MHPRLGMLAPDKFIRLSEESGFIVELTDWVLRTACSQAKKWQEQNLG-SVRVAVNLSPYH 543 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 ++ E + +++ T P+ +++ +ES +M N E + L LR++G+++++DDFG Sbjct: 544 FQRQDVKEAILSVLEATGLEPALLEIEITESALMQNDEYTCALFRELRELGMTISVDDFG 603 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL P +T+K + + + + + AI+ +II MAK++ I+A+ + Sbjct: 604 TGYSSLSYLHRFPINTLKIDRTFILNMMKSTEDQAIVTAIIAMAKSLNMQIVAEGVETVD 663 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952 +++L GC IQ V+ P+ +++ + Sbjct: 664 QLEKLKDQGCHEIQGFLVSRPVAADAVTEF 693 >gi|218894545|ref|YP_002443415.1| hypothetical protein PLES_58371 [Pseudomonas aeruginosa LESB58] gi|218774774|emb|CAW30591.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 951 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 132/577 (22%), Positives = 268/577 (46%), Gaps = 10/577 (1%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 T + + + + + + + + + D + + + I G Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + L + ++R I + G+ Q E + + +++ + Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + NG+ +G D++ ++ E + D LTG+ NR+ F +RL + ++ Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ID+D++K +ND LG V D +L + +R+ + LARL+G+ F I+L Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ + + + P+++L E+ + AS+G + ++ S ++ A LAM Sbjct: 615 GGTGTAALSRLSERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674 Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 HAK GGN + FR + S R+ ++ L AVE +L + Y P + L +EA Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASGCADSVEA 734 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP+ G I S F+ +AEE +I I F+L R W + + + +N+ Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L +L + +++ ++ + ++++L +ES + + +LR++G+ L++ Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL +P D +K + S + + AI+R+II MA +++ ++A+ + Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L CD +Q + PL +++ + L++ Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949 Score = 118 bits (297), Expect = 4e-24, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%) Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222 + + + + L+ + L + L + SS L+ + Sbjct: 8 LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67 Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 + V+L + + + + WR +S + F + A + Sbjct: 68 LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326 + G+ AIL Y + A + + + Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187 Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376 I+ ++G A L A+ ++L ++ Q LV + Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247 Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 ++ G SQ + R ++A+ S +WDWD+ RV + + Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + +G R + IH D R L + R + E+RVR + + W+ Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365 Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 R R M + G + R +G +DI+ +K+ E A Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405 >gi|206563013|ref|YP_002233776.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia J2315] gi|198039053|emb|CAR55016.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia J2315] Length = 748 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 136/619 (21%), Positives = 260/619 (42%), Gaps = 15/619 (2%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 W + F+ G+ + + +P+ +L I + H ++ + Sbjct: 133 WSVPFLDDAGIVLGAFAVYHHWPCRPSDEETALLRDIGNSVGLAVHQDR---IARQLAHS 189 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--- 460 E L V + + + + P ++ + + + + D Sbjct: 190 EEHHRLVVNSLSEGILVISREGVVIASNPSANRMMRVKGELVGRRLSTVILRKLREDGTP 249 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDI 519 + + L Y AD W+ P+ + NDI Sbjct: 250 IEPRDWPSRRALETATPMLDYTVGFGLADGDIIWVRGNAVPIVRPGETRADSVLVSFNDI 309 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKK 578 +++ + + A +D LTG+ NR+ DR+ + A R ++ ID+ +KK Sbjct: 310 GPVREAQQQLRYMATRDALTGLYNRRWLGDRMRELFGVHDAATGPARVAILFIDLVGFKK 369 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND G GD +L S+ R+ L R+ G+ F I++ ++ ++A A + Sbjct: 370 VNDTAGHDAGDALLRSVAARLSACAGRYA-LTRVGGDEFVILVDDCDDPERLAVLAREVI 428 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 +IA P + E + SIG + + +++NA+ AMY AK RG NH F Sbjct: 429 DAIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDAKQRGRNHFTFFTAQ 488 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + I++ L A+ + L L Y P++ VG EAL++W P+ G +S +E Sbjct: 489 LNLRLQRRFAIEQSLRRALASDMLRLAYQPVVDARSGRTVGAEALLRWTSPELGPMSPAE 548 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I I ++LE R WR P + + +N++ + L E + Sbjct: 549 FIPVAEDTGLIVGIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQF-HEGLVESVGR 606 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 +++T PS ++L +E V+M + + +L L + + +++DDFGT S L+YL Sbjct: 607 CLAQTRLDPSALELEITEGVLMNDTDTVLPMLEALTDMNVRISVDDFGTGYSSLAYLKRF 666 Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S ++G +AI ++++ MA ++ + A+ + + L ++GCD Sbjct: 667 PLHNLKVDRSFVSGVPDHHDSVAITQAVVAMAHSLGMKVTAEGVETQAQSWFLQQIGCDM 726 Query: 935 IQDSHVASPLGFNSILKLL 953 Q + PL + + L Sbjct: 727 QQGYLFSRPLEASDYARRL 745 >gi|255318505|ref|ZP_05359738.1| two-component response regulator [Acinetobacter radioresistens SK82] gi|262378733|ref|ZP_06071890.1| two-component response regulator [Acinetobacter radioresistens SH164] gi|255304497|gb|EET83681.1| two-component response regulator [Acinetobacter radioresistens SK82] gi|262300018|gb|EEY87930.1| two-component response regulator [Acinetobacter radioresistens SH164] Length = 849 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 134/565 (23%), Positives = 251/565 (44%), Gaps = 16/565 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATILGLASGSMHGPI 449 ++ V S ++ D + V P +G + G Sbjct: 283 RDISVNRKNKESLRLLKRGVDASPSGMFITDASENMVISFVNPAFLKQVGYTEEEVIGRN 342 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 N+L + + V ++ +Q + D + W + + P+ + +G Sbjct: 343 YNFLQG--RDTNLEQLALFKQAVKEQKD-VQITLKNYCRDGSWFWNRLMLGPILDQDGKC 399 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++GI DIT+Q+ E I D LTG+ N+ +F L + T++ Sbjct: 400 THFLGIQEDITQQRIHEEYIEYQNTHDQLTGLLNQINFEKVLEQTFEKQK-----LLTLL 454 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ID+D + +ND LG VG+ V+ ++ R+ + LK ++L+R + + F +++ +++ K Sbjct: 455 YIDLDDFSSMNDSLGYYVGNKVIKNIASRLKDFLKPDEVLSRYAEDEFVLLIKGQHDHKK 514 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 I A + I+ P + + + ++ASIG S +SE+L + LAM AK +G Sbjct: 515 ITTRAANILDLISEPFQVDDHTLHLSASIGIVINNSFIQCASELLYRSTLAMREAKRQGR 574 Query: 690 NHVESFRVSSFRSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N + S+ S + ++ +L AV+ + L Y P+I+ + + G+EALI+W H Sbjct: 575 NTWHCYEESNKISPNLDYAHLRLELMEAVKKKQFTLFYQPLIKPLTGVVQGVEALIRWYH 634 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G I F+ +AE I I ++LE DI W + + + +NI+ Sbjct: 635 PERGYIFPDFFIPLAERTGQIVNIGQWVLETACLDIAKWNKA-HDSQLTVSVNISPLQFG 693 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 E +Q + + +K+ +E V++ +R+ +L +R +G+ + +DDFGT Sbjct: 694 RAGFLEELQKALKISQLPAELLKIEITEGVIISGADRAIEILKSIRALGVHVVIDDFGTG 753 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL +P +K + S + + + AI+RSII +A + ++A+ + Sbjct: 754 YSSLSYLRLLPITQIKLDRSFIVNLTISVQDAAIVRSIIFLAHQLNLEVVAEGVETLEQA 813 Query: 925 KELTRMGCDYIQDSHVASPLGFNSI 949 L + CD Q A P + + Sbjct: 814 SLLYQQDCDLFQGYFYARPAPISDL 838 Score = 47.6 bits (112), Expect = 0.011, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 14/158 (8%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLG--------SGDIVWDWDIVRDRVTTTPDI 434 +++ + + + D +Q +A+ D++ + D+ + T Sbjct: 147 NIRLLEQAASLVALAIEL-DDERQQKIAINEKYSSFYNYHPDVILELDLQGYVLNTNIAC 205 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 I G + + G ++ I + S + + E V + W Sbjct: 206 REITGFSQEQIQGK--HYWTLIPDEYHELVDAAFKSALLGKSQHY--EIPVYNVIEKIIW 261 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + I P+ N + IA DI+ +K+ E + Sbjct: 262 LDIINLPII-QNQKVTGVFTIARDISVNRKNKESLRLL 298 >gi|167622751|ref|YP_001673045.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis HAW-EB4] gi|167352773|gb|ABZ75386.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella halifaxensis HAW-EB4] Length = 819 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 148/568 (26%), Positives = 257/568 (45%), Gaps = 12/568 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450 + E S S + V D+ + I G + G R Sbjct: 252 RNISSHKAAKDQLELASRVFENSVEGVIITDVDGAVIDAHGAYKEITGYEKEELLGKNPR 311 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + H D+ F + + +G+ E R + ++ I + + I Sbjct: 312 VFNSGRH--DKVFFTKLWSDLLT--KGKWHGEIWNRRKNGAIFPQMLNISAVYDDEHQIR 367 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 ++ + NDI+ QK+S + AF D LT +PNR + L L ++ N R ++ Sbjct: 368 YFVAVFNDISAQKQSEAELARVAFHDPLTKLPNRMALNTGLEQELKQAS-HSNTRLGLVY 426 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K+IN+ G +GD+VL+ L+RR L +ARL + F +IL + +++ ++ Sbjct: 427 IDVDLFKQINESYGHPMGDEVLLELSRRFNFGLDNLATVARLGSDEFAVILPNIDSNDRL 486 Query: 631 ADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +RK P L E + +TAS+G A + SS +L NAE+AM+ K G Sbjct: 487 LLSINKLRKMFDQPFLLAEHGQARLTASMGVAIYPDDAQDSSGLLVNAEVAMHRVKQDGR 546 Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + S ++ ++ L A+E + +L Y P I ++VG EAL++W P Sbjct: 547 NSYAFYTESLTQESVAKLKLQSALHDALELNAFHLEYQPKISFRTGDVVGFEALLRWVDP 606 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G+IS F+ +AE++ +I+ I ++L+R WR Q I +N+A + + Sbjct: 607 VLGSISPDIFIPLAEKIGLIQDIGRWVLKRACEQGQRWRKQGVSFG-RIAVNVAGQQIQR 665 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + + + ++ +T S ++L +ES +M NPE L +L ++GI L++DDFGT Sbjct: 666 SSFVDEVAEILKQTGLPASSLELEVTESCMMSNPELVSQDLAKLGQMGIELSIDDFGTGY 725 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL +P +K + S + G AI ++II M + ++A+ + + Sbjct: 726 SSLSYLKKLPLHKLKIDQSFVAGLPFDTHNTAIAKAIIAMGHALNLQVVAEGVETQAQAD 785 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953 L CD+ Q + P + L Sbjct: 786 FLKDNHCDHAQGYFYSKPKLVEELTAFL 813 Score = 41.9 bits (97), Expect = 0.59, Method: Composition-based stats. Identities = 12/113 (10%), Positives = 33/113 (29%), Gaps = 2/113 (1%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 VW D + + + + + +F + Sbjct: 155 VWMKDTSGRYMMVNHSVELAWNRSREQILNFTDD--ELFEPRLAKHFIASDMESIRKGVE 212 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 E + W+ P+ + +G++ +GI+ +I+ K + + + Sbjct: 213 VSAGECEGLDIGDVDSWLETTKVPIMDDDGELTGVLGISRNISSHKAAKDQLE 265 >gi|156741489|ref|YP_001431618.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus castenholzii DSM 13941] gi|156232817|gb|ABU57600.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Roseiflexus castenholzii DSM 13941] Length = 794 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 132/577 (22%), Positives = 270/577 (46%), Gaps = 10/577 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +L + D A+ + D + D+ P + GL + Sbjct: 220 AILRGISRHHRLDVDLRLMMAAISSTSDGIVIADLDGVPHYQNPAFQKMTGLTLDDL--R 277 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + L ++ D R L + + + E R+ +++ I P+ +++ Sbjct: 278 MAGGLLRLYR-DVGTARAALSAVRSGQ--SYRGEMRLIDRQGAAISVLLHIDPVLDASNQ 334 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 ++ + + D+T++K + + + + D LTG+ NR LDRL L+ + Sbjct: 335 VIALVAVHTDVTQRKLTEDRLAYLSSHDPLTGLANRTLLLDRLQLALERRNRHGAALCGI 394 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +++D+D++K+IND LG VGD+VL+++ R+ + + D +ARL G+ F ++L S + Sbjct: 395 LLLDLDRFKQINDSLGHMVGDEVLIAVAGRLKHITRPGDTVARLGGDEFAVVLDSVGSLD 454 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 I A+ ++++++ PI + ++ + V S+G A +++ +L++A+ A++ AK RG Sbjct: 455 DIWRIALRIQQALSHPITVQDQSLMVGVSLGIAIDDGRTTSAAALLRDADTALHQAKARG 514 Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 + + F + + ++ ++ +L A+ L L Y PI+ L I G EAL++W Sbjct: 515 RSRIVLFEEAMHTAATTQLQLEIELRQALHRQALLLHYQPIVDLASGAIRGFEALMRWHR 574 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDL 805 P G + F+ +AEE MI A+ + + + R WRDQ + + +NI S+ L Sbjct: 575 PLSGLVLPDGFLPVAEEAGMIPAMGAWSIVEVCRQARRWRDQFGSAAELPVSVNIHSRQL 634 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 EL ++ + + + + + +E + + + L +L+++G+ + LDDFGT Sbjct: 635 EQTELPHQVRQALREFNLPGAALTIEITEKATLRDLDLVVTQLQQLKELGVQVVLDDFGT 694 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L +L +P + VK + S + I I+R++I +A+ + ++A+ + E Sbjct: 695 GYSSLGHLARLPINGVKIDRSFVQSMMHDPLSITIVRAVITLARELNLGVVAEGVETEEQ 754 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 L ++GC Q + + + + R L Sbjct: 755 RAALLQLGCTCAQGWLFGRAVDAEAAAEWIARRRELS 791 >gi|209542675|ref|YP_002274904.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Gluconacetobacter diazotrophicus PAl 5] gi|209530352|gb|ACI50289.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gluconacetobacter diazotrophicus PAl 5] Length = 710 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 134/622 (21%), Positives = 266/622 (42%), Gaps = 44/622 (7%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 ++ + + + A V + T ++ I D Sbjct: 111 VLRGYIVVAGGRYLGTGTALDLINASHSNAVASAANLHET----AEELRKANRKILRDKL 166 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWL--------PYI 456 V + + DR+ + G + + Sbjct: 167 FMDTIVENIPSALVVRSVRDDRLVLINRAAELMTGRERSELVEHTAADAFTETEIGHALV 226 Query: 457 HIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H R+ L +R + R +++ GD + Sbjct: 227 HPEGTRREGVSESL----------------LRNRAGDMRAVATRYVTIADERGDARWELC 270 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 +A+D+TE++++ + + A D LTG+ NR F RL + ++ ID+D Sbjct: 271 VADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGVCVA-----GHEAILLCIDLD 325 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K +ND+ G A GD +L + R+ + D++ARL G+ F II + ++A A Sbjct: 326 YFKTVNDLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAIIWPNVPEKEELAHRA 385 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++I+ P + + + + ASIG AS+ + +S + ++A++A+Y AK G N S Sbjct: 386 GEIVETISRPYVIDGQHVAIGASIGSASYPADAGSSDLLRQHADIALYKAKALGRNCFHS 445 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F S ++ + ++L A+ +S++ L + P+ + D +I EAL++W+HP G I Sbjct: 446 FDAGLSYEMRNKARLGDELRAAIGSSQICLHFQPLYTMPDNQIAACEALVRWNHPVRGMI 505 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I + ++L R+ + W P + + +N++ ++ Sbjct: 506 PPDQFIGLAEENGLIHELGEWVLRAACREAVCWP-----PHVKVAVNVSPVQFRNSRFMA 560 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 +Q+ + + P R+++ +E++ + N +R +L +L +G S+ LDDFGT S LSY Sbjct: 561 IVQSALMEAGLVPHRLEVEITENIFVQNSAVNRDILRQLADMGCSVVLDDFGTGYSALSY 620 Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 L F +K + S + EK + I+++I+ +A++++ A+ + + L MG Sbjct: 621 LRLFSFQKIKIDRSFVKELPEKSASGIIQAIVSLAQSMDIPTTAEGVETQEQWARLHAMG 680 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C Q + P +I + L Sbjct: 681 CSEAQGFLLGRPEPVAAIRERL 702 >gi|323487737|ref|ZP_08092995.1| signaling protein YkoW [Planococcus donghaensis MPA1U2] gi|323398471|gb|EGA91259.1| signaling protein YkoW [Planococcus donghaensis MPA1U2] Length = 814 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 159/789 (20%), Positives = 314/789 (39%), Gaps = 27/789 (3%) Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIF--YMVNRSSMLIPTFAMAWVVLGYISIDFG 237 + D + + G A T F M + +LI + + Y +I Sbjct: 31 DFVDKNKNKVRITSFMAGFVIYFAYLNTYFTGAMTPINLLLIVSIILFCSFAVYSAI--- 87 Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA--KVGYITFSGIACIAI 295 S + + A SL+ Y+ + + I+ + Sbjct: 88 --STICYKEVTFQRLLIGSMIFAFCISLV----NYIDLRKIMIENNLDMNLLLFISANIL 141 Query: 296 LFCMSFYYPMVTASIARITLASIV-LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 L + + +I + + Y I + F F Sbjct: 142 LLGNAIATFRFIRQLRKIEKIHVKWIIYGSVAIGLAFASIRYTLFSSITLFSNFDLFNNH 201 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + I L + L + +V L F L + + I+ + + Sbjct: 202 DIEIYDWLYFNNTLLPLTINIFGLVFLELFPSFISELYSEKQKELIYKNKHQYEALFENQ 261 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 ++ D + I G + ++ I + R F + L Sbjct: 262 AIAIFSVDDKGEINKVNEATKKITGFRPEELD-EYSSFSELIDEHQRAEFLSFLKIAFNG 320 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 E ++ + I + P ++ DITE ++ E + A+ Sbjct: 321 DSQMF--ETKLLTKFKNHIDVQITLVPNFLDE-ELTHINVFVKDITEIAEAREKMHHMAY 377 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D+LT +PNR+ F++ L + S V +D+D++K +ND+LG +GD +L Sbjct: 378 HDSLTLLPNRRYFVEELDRRITYSTAFSQ--MAVCFLDLDRFKLVNDILGHQIGDQLLQV 435 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL--EREI 652 L R L+ +++RL G+ F + ++ + I P L +E+ Sbjct: 436 LADRFRSLVDKDVVISRLGGDEFTFLFPDVSDYEVFQKQLEDILLQIQTPFLLGSQNQEL 495 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKED 710 +T SIG A + +++K A+ AMY AK +G N E + ++ ++ D Sbjct: 496 YITGSIGIALYPEDSRVGEDLMKFADAAMYSAKEKGKNMYEFYHNYLKEKNPKQLSLEAD 555 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 + AV+ + + Y P I ++ G+EAL++W+HPK G I +F+ + E+ +I + Sbjct: 556 VRKAVKEKQFEIYYQPQIDYATGKMFGVEALLRWNHPKEGLIKPEDFIALVEDSELIIEL 615 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L ++ + SW++Q +++ +N++ K + ++ + +T Y+ R+ L Sbjct: 616 GEWVLSESSKQVKSWQEQ-GCEDLYLSVNVSIKQFFHHNFIGKIEEIFEETGYNLERLDL 674 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ES+ + + E ++ + RLR +GIS+++DDFGT S L++L D +K +GSL+ Sbjct: 675 EITESMAIKDVEYAKDIFDRLRHLGISISMDDFGTGYSSLNHLKNFSIDRLKIDGSLVRD 734 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 EK I+ +II MA+N++ +A+ + L +GC+ +Q + PL ++ Sbjct: 735 IETDEKARTIIDTIIVMARNLKLLSLAEQVETVEQEAYLKSIGCNEVQGYLYSEPLTGDN 794 Query: 949 ILKLLKERF 957 + + L + Sbjct: 795 MGEFLTNNY 803 >gi|29831780|ref|NP_826414.1| sensory box/GGDEF family protein [Streptomyces avermitilis MA-4680] gi|29608897|dbj|BAC72949.1| putative sensory box/GGDEF family protein [Streptomyces avermitilis MA-4680] Length = 620 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 134/560 (23%), Positives = 264/560 (47%), Gaps = 32/560 (5%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D VT + T+LG + ++ G L + + + R+ RL+ Sbjct: 55 DREGLVVTANETLGTLLGTDADALAGKTAADLVDLSSD--PRAWHAYREVLRGRQARLRC 112 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 R++ D + W+ + + P+ IL + DI+ ++ + D +T + Sbjct: 113 TRRLKHPDGRSFWVQVTVSPLPEEERAILLSVA---DISAGRELQARLRHLQMHDPVTRL 169 Query: 542 PNRQSFLDRLTTILDLSAT--DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 PNR F +RL+ L+ A R + +D+D +K +ND LG +GD +L ++ R+ Sbjct: 170 PNRTLFFERLSAALEAEAYEESGTGRIGLCYLDLDGFKAVNDTLGHRIGDRLLAAVAERL 229 Query: 600 GELLKFPDI-------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + +ARL G+ F +++ + ++AD A ++ K++ P +L + + Sbjct: 230 TRCAEEAGYARPSAPLVARLGGDEFALLVEDSTGTDQLADLAESVLKALQAPFDLSGQRL 289 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710 +V+ASIG ++ T++ +++ A+ +Y AK G + F + Sbjct: 290 SVSASIGVVERHAAGTTATGLMQAADTTLYWAKADGKSRWTLFDPERNAHRMTRQALSSG 349 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A+E+ E L Y P++ + D + G+EAL++W+HP++G ++ + F+ +AEE I + Sbjct: 350 LRPAIEHGEFVLEYQPLVGMEDGRLRGVEALVRWNHPQFGMLTPNRFIGLAEEDGSIVQL 409 Query: 771 NLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 ++L R W+ + PP+F+ +N+A + + D++L + ++++T +P ++ Sbjct: 410 GRWVLATACRQARRWQLEHPDAPPLFVSVNVAVRQVWDSDLVTDVAEILAETGLAPHLLQ 469 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES VMG+ R L L +G+ + +DDFGT S L+YL +P +K +GS + Sbjct: 470 LELTESAVMGSAGRPLQALQALSDMGVHIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVR 529 Query: 890 G---------------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 G ++ ++I +A + T+ A+ + L +GCD Sbjct: 530 GFQYDTSEKHDGTDARPNPADEVVVEAMIQLAHRLGLTVTAECVETSAQASRLRGIGCDT 589 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q + P+ + I +LL+ Sbjct: 590 GQGWLYSRPVAPDRISELLR 609 >gi|317129891|ref|YP_004096173.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] gi|315474839|gb|ADU31442.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus cellulosilyticus DSM 2522] Length = 716 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 133/506 (26%), Positives = 244/506 (48%), Gaps = 22/506 (4%) Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D+D + ++ ++ + + I P+ + N +++ I NDI Sbjct: 222 DKDIITSRFKQAFEGQKVEFDFKH-------GYRILHASITPIIHCN-EVIEVIATINDI 273 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE K S + A+ D LTG+PNR+ + L L + T + +++++D+DK+K I Sbjct: 274 TELKNSELAVKNMAYHDALTGLPNRRILEEDLMYRLVDAKTQQK-KASLIIVDLDKFKYI 332 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDI----LARLSGNRFGIILISENNSLKIADFAI 635 ND LG VGD ++ R+ L + L L G+ F I+I + + Sbjct: 333 NDTLGHNVGDRFIMMAAERLQTLTFDNHVEYFRLYHLGGDEFAWIIIGPD--EHVCIVTR 390 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + P E ASIG + + E++K A++A+ AKH GGN F Sbjct: 391 QILTLFDEPFYYRNGEFHQKASIGVSVFPEHATNPEELMKAADMALLSAKHAGGNTFRKF 450 Query: 696 RVSSFRSD--RVMIKEDLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 +V++++DL A+ N++ L Y P++ + ++I EALI+W HPK G I Sbjct: 451 NSQMKNVFVSKVLMEDDLRQAIIANNQFELFYQPVMDVKQQKINSCEALIRWYHPKKGLI 510 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 + ++F+ IAEE +I + +++ + RD+ W + + I +NI++ L ++ E Sbjct: 511 NPADFIPIAEETGLIIPLGEWVIRQACRDLKRWEES--QIHLNISVNISAYQLKQSDFVE 568 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++S P+RI+L +E+ +M N S L +L++IG ++ +DDFG S LSY Sbjct: 569 RLTTIVSDERVLPNRIQLEITENGLMENTTDSINTLQKLKQIGFTIAIDDFGIGYSSLSY 628 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P + +K + S + AI+ S++ + K++ ++A+ + G+ L+ + Sbjct: 629 LKQFPVNCLKIDRSFVKDIPSDNSDSAIVSSVVKLGKDLGLLVVAEGVEGQEASDYLSSI 688 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 C Y+Q + + P+ F L+ E Sbjct: 689 ECPYLQGYYYSKPIKFEDFTDLMNEH 714 Score = 72.7 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 19/212 (8%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++Q +S + E A S +V D + + G + + Sbjct: 19 LMQEYENISDYSHSMLIQLEELLRAFDHSCILVL-TDSSGSIIEVNDTYCQVSGYSRDEL 77 Query: 446 HGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G +H + + + + + E + R D +W+ I P+ Sbjct: 78 VGNTH---RLVHSGYHTQEFYHKLWQTIMNG--DIWSGEIKNRKKDGSIYWVKATIYPIY 132 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 N G I ++ I DITE K E + +D T I N Q+F+ R+ L + D Sbjct: 133 NKEGKIDMFLSIRLDITEGKIYEEKLRQIIEKDYSTIIKNIQNFIIRV-----LPSNDKG 187 Query: 564 LRPTVM------VIDIDKYKKINDVLGIAVGD 589 +++ VI ID K N +G +G+ Sbjct: 188 PVVSLLEGHLAKVIGIDTEKAKNKPIGEVIGN 219 >gi|89901405|ref|YP_523876.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89346142|gb|ABD70345.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodoferax ferrireducens T118] Length = 802 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 131/576 (22%), Positives = 249/576 (43%), Gaps = 19/576 (3%) Query: 389 HVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 V + +Q + + R LA S D ++ D + P + + + Sbjct: 233 RVFSFRDITQSVDAQS-RLRLAAKVFESSVDAIFITDPDLTILAVNPVCERLTDTSQAQL 291 Query: 446 HGPIRN--WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + +L G + + + A + + + Sbjct: 292 LGESAKSLFQDPCDPELMVRVEQVLRD-----EGFWRGQVWLDRAGRSACAVHLSWVLLR 346 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + +G +L I D+TE+ + + I A+ D LTG+PN+ R+ L ++ + Sbjct: 347 DEDGAVLHTICFFKDLTEELAAQKRIEQLAYSDALTGLPNKLLLSQRVGFALRMAERHGS 406 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + V +D+D +K IND +G GD VLV + RI L+ D L RL G+ F I + Sbjct: 407 -QFGVFFLDLDHFKNINDSMGHVFGDRVLVEVAERIKRCLRDADTLCRLGGDDFVIFVQE 465 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ A + +A + E +V SIG A + + + E++K A+ AMY Sbjct: 466 I-DARGAEMLAQRILDLMAQAFLIEETSFSVGCSIGIALYPADGRSLDELIKCADTAMYL 524 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 K RG ++ R+ + + A+E L Y P I L + ++VG+EAL Sbjct: 525 VKERGRGSFRFYQPQMNVDLLSRMKMDHAMRRAMEQGMFRLHYQPQISLANGQLVGVEAL 584 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W + GN+S F+ +AEE I I ++L+ R + W++ P+ + +N++ Sbjct: 585 IRWLDGELGNVSPVLFIPLAEESGFIITIGTWVLKEAVRQAVLWQNAG--TPVTVSVNVS 642 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + + E + ++ + +P ++L +E++++ + + L L +G++L++D Sbjct: 643 ALQFQQTDFVEIVANVLKDSGLAPYLLELELTETILVRDANETLNRLHALAALGVALSID 702 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P +K + S + G E AI+ + I MA+ ++ ++A+ + Sbjct: 703 DFGTGYSSLAYLKKFPISKLKIDRSFVMGLPDDEGDRAIVSATIGMARGLKLKVVAEGVE 762 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L + C+ Q + L +L+ Sbjct: 763 TIAQRDYLAGLNCESFQGFLCSPGLPAEEFERLMAS 798 Score = 55.3 bits (132), Expect = 5e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 7/125 (5%) Query: 409 LAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 L + G + VW D V + A +LGL + + G L + D + Sbjct: 8 LLIDGLIEAVWLVDPVSLRILAVNHAAADLLGLKAEDLVGKPAIELT-VTPED----QFF 62 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + E +R AD + R+ + G + +GI D+ +Q+++ + Sbjct: 63 WEDIAAGLVDGIHSETLLRGADGMAVPVERRVSRVWPETGRAVYVVGI-RDLRQQRRTED 121 Query: 528 GILCN 532 + Sbjct: 122 ELESL 126 Score = 40.7 bits (94), Expect = 1.3, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 10/151 (6%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 I+ + + S + + D + D D A + + + Sbjct: 110 IRDLRQQRRTEDELESLVAELRATLESTADGILVTDRSGDIRNYNRHFAAMWDVPEELLL 169 Query: 447 GPIRNWLPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 P L H+ D + T L + + + RP Sbjct: 170 NPNDRALHG-HLASRVLDAAAYETRLRAIAESPLLETTDVLILITG----RLLERVSRPQ 224 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + G + DIT+ + + A Sbjct: 225 FSR-GQATGRVFSFRDITQSVDAQSRLRLAA 254 >gi|114778687|ref|ZP_01453499.1| hypothetical protein SPV1_13467 [Mariprofundus ferrooxydans PV-1] gi|114551049|gb|EAU53611.1| hypothetical protein SPV1_13467 [Mariprofundus ferrooxydans PV-1] Length = 696 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 146/583 (25%), Positives = 267/583 (45%), Gaps = 26/583 (4%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I + ++ L + + + ER SLA + D +WDW+IV +V + ++G++ Sbjct: 115 ILLSRVRMQLEMCRLYKDVKTSEERYSLAFAAANDGLWDWNIVTGKVFFSDHWYEMMGMS 174 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 I+ W +H +D R +D + ++ E+R D + WM+ R R Sbjct: 175 PDCAFDSIKQWFDRVHPDDIAALRQAVDDHLSDPLRIVKQEYRALHEDGSYRWMLCRARA 234 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + G LR G DI+ K D +TG+PN F+DRL + + Sbjct: 235 LFSDTGTPLRMTGAQADISASK----------TFDPITGLPNAAVFMDRLQRVHAHARRT 284 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL---------LKFPDILARL 612 + + + ++ +K+ LG A + + ++ RR+ E+ LK P ++ L Sbjct: 285 GSANLALFSLSLNHKEKVTSALGSAGYEKLTSAIARRVNEVAATESCLTQLKEPAFISLL 344 Query: 613 SGNRFGIILISE-NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 + NRF I+L S ++ +++S+ P + + + T SIG A + Sbjct: 345 ADNRFMILLEGIPQESAELLKIGTCIQRSLGQPFTIFDETVYCTTSIGIALPSKDNDAVD 404 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIR 729 E++++A A A+ G + + D + ++ +L A+ N EL Y P++ Sbjct: 405 EVIQDAIAAESIARQAGEDITHIYNPHLHGKALDHLRLENELRHAINNGELRAFYQPLVS 464 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 E+ G E+L++W HPK G ++ F+ +AE++ +I +I+L+M R W + Sbjct: 465 -SSGELAGSESLVRWQHPKHGLLAPYHFIPLAEDVGLIHSIDLWMFRESCRQYREWIENG 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P +FI +NI+ + L E + + + + + P I L +ES+ G+ E+ LL Sbjct: 524 GSPTMFISVNISVQGL-SIEWADQVLSAVKEFGIPPESIHLEITESIFAGDIEKIITLLE 582 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907 +L +GIS +DDFGT S SYL +P +K + + + +EK ++ +II MA Sbjct: 583 QLVDLGISFAIDDFGTGYSCFSYLRRLPASYLKIDKAFIDDVADSEKARLLVSNIIHMAH 642 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 ++ IIA+ + + L +G DY Q + P L Sbjct: 643 DLGMKIIAEGVETREQAEILEALGSDYFQGYYFGRPQAAAGFL 685 >gi|90422107|ref|YP_530477.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gi|90104121|gb|ABD86158.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 743 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 143/561 (25%), Positives = 246/561 (43%), Gaps = 20/561 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457 + L + + + +R+ G ++ L Sbjct: 180 ELKQREASFRLLFDSNPVPMIVCALADERILGVNDAAVEHYGYSAAEFSTLTIRNLQAFE 239 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 D R R ++ AD + + R + G+ + + Sbjct: 240 AE----RPWTGDQSTDERAAR---TWKHVKADGSLIDLAVYSRQLL-YGGEPAVLLALM- 290 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE+K++ + A D LTG+PNR S RL +L + N + V + ID +K Sbjct: 291 DITERKRAEMRLAFMAQHDGLTGLPNRNSLRKRLDEMLVHTRR-GNEKAAVHFLGIDNFK 349 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG AVGD +L + RR+ L+ D++ RL+ + F I+ + + A + Sbjct: 350 GVNDSLGHAVGDKLLRGIARRLRSTLREEDVIGRLNSDEFAILQSGVSRPEDVVLLAKRL 409 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696 +I P L + + ASIG A S ++L +A++A+ AK F Sbjct: 410 LHAIGEPFLLDGNSVVIGASIGIAMAPGDGDDSEKLLMSADMALARAKTETRGTFSFFEP 469 Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + R I+ +L A++N L Y P+I L + I G EAL++W HP+ G +S S Sbjct: 470 GMDARAQTRRKIESELRGAIQNDVLRPHYQPLIGLSNGRITGCEALVRWPHPERGMVSPS 529 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AE+ +I A+ +L+R D +W D + + +N++ L + Sbjct: 530 EFIPVAEDTGLINALGAQVLKRACEDAANWPD-----DVRVAVNLSPLQFRLGNLLSLVM 584 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + +T P R++L +E++++ + L LR +G+ +++DDFGT S LSYL Sbjct: 585 DALKQTGLPPKRLELEITETLLLEKSSQVIATLHALRALGVRISMDDFGTGYSSLSYLRS 644 Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + G R AI+RSII + + TI A+ + E ++ L GC Sbjct: 645 FPFDKIKIDQSFVRGLCTNRELQAIVRSIISLGMGLGVTITAEGVETESELSWLRAEGCH 704 Query: 934 YIQDSHVASPLGFNSILKLLK 954 Q ++ + I+ LL Sbjct: 705 EAQGFLFSAARPNSEIIDLLS 725 Score = 41.5 bits (96), Expect = 0.71, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 17/155 (10%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 V++ A ER A+ + D + A I + Sbjct: 46 VVRKRAAADAAIAEARKSHERLREAIDILPQGIVFLDAEGRYILWNKKYAEIYNRTADLF 105 Query: 446 HG---PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-----QYEFRVRAADNQFHWMII 497 I + D + ++ R +L ++E + +D + + Sbjct: 106 QPGVKMIDTLRVGVARGDYPEALGHEEEWMAERMAKLFQPGERHEQLI--SDGRCIQIEE 163 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R+ ++G IG+ DITE K+ Sbjct: 164 RMT----ADG---GIIGLRIDITELKQREASFRLL 191 >gi|312879090|ref|ZP_07738890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Aminomonas paucivorans DSM 12260] gi|310782381|gb|EFQ22779.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Aminomonas paucivorans DSM 12260] Length = 675 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 127/592 (21%), Positives = 248/592 (41%), Gaps = 21/592 (3%) Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429 A G +++V + T ++ + + + +L + D ++ Sbjct: 100 APFEGSLVLVKVRDLTEESRTRERLAATETLLEEMDECALVM----------DREGKVLS 149 Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489 P + G A + R I + + E R R D Sbjct: 150 MNPALLRCTGFARDELLD--RAGFDLIDP---KSVPAETIRCSLRENAFWEGEVRTRRKD 204 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 IRIR + + G Y+G+ D++ QK+ + + D LTG+PNR FLD Sbjct: 205 GSTFPQRIRIRALQDEEGTPQGYLGVGVDLSTQKEQEARLAWQVYHDGLTGLPNRHLFLD 264 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 RL L + +D V+++D+++++ IN +LG GD +L +TRRI E ++ D + Sbjct: 265 RLNLELQRARRNDR-SLGVLLLDLNRFRDINALLGHREGDRILTLVTRRIQEHVRSADTV 323 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 ARL GN F +++ +A A + S P+ + + V S+G A Sbjct: 324 ARLDGNTFALVVADATTPASLATLADRILASFREPLEYGTQGLVVGVSLGLALAPGDADG 383 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727 + E+L A A+ AK GG+ + ++ L A++ + L Y P+ Sbjct: 384 AEELLDKASQALRKAKADGGSRCVFYNKELHNRFARRILLENGLRRAIQERRMTLHYQPL 443 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + + +EAL++W K + ++F+ +AEE ++ + ++ + W Sbjct: 444 VNPETNRVQAVEALLRWPTGKGTFVPPADFLPVAEETGLMIPLGEWVFQEACAQAARW-A 502 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + P+ + +N++ +L + ++ ++ + SP + + E+ ++ E + L Sbjct: 503 SGPVGPLPVSVNLSGTELRHGQPLRTIREALASSGLSPELLVVEICENALLEEREAAESL 562 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPM 905 LR +G+ + +DDFGT S L+YL D +K + S +T + A++ +I+ M Sbjct: 563 FRELRALGVKVFIDDFGTGYSSLAYLRDFSLDGLKVDKSFVTRLPQDSRDLALVSAILEM 622 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 A+ + + + I + + +G IQ + P + LLK + Sbjct: 623 ARALGLETVVEGIETPEQRQAVQGVGYTCIQGFLYSRPQAPLQLEALLKAKN 674 >gi|162148059|ref|YP_001602520.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786636|emb|CAP56218.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] Length = 700 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 134/622 (21%), Positives = 266/622 (42%), Gaps = 44/622 (7%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 ++ + + + A V + T ++ I D Sbjct: 101 VLRGYIVVAGGRYLGTGTALDLINASHSNAVASAANLHET----AEELRKANRKILRDKL 156 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWL--------PYI 456 V + + DR+ + G + + Sbjct: 157 FMDTIVENIPSALVVRSVRDDRLVLINRAAELMTGRERSELVEHTAADAFTETEIGHALV 216 Query: 457 HIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H R+ L +R + R +++ GD + Sbjct: 217 HPEGTRREGVSESL----------------LRNRAGDMRAVATRYVTIADERGDARWELC 260 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 +A+D+TE++++ + + A D LTG+ NR F RL + ++ ID+D Sbjct: 261 VADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGVCVA-----GHEAILLCIDLD 315 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K +ND+ G A GD +L + R+ + D++ARL G+ F II + ++A A Sbjct: 316 YFKTVNDLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAIIWPNVPEKEELAHRA 375 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++I+ P + + + + ASIG AS+ + +S + ++A++A+Y AK G N S Sbjct: 376 GEIVETISRPYVIDGQHVAIGASIGSASYPADAGSSDLLRQHADIALYKAKALGRNCFHS 435 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F S ++ + ++L A+ +S++ L + P+ + D +I EAL++W+HP G I Sbjct: 436 FDAGLSYEMRNKARLGDELRAAIGSSQICLHFQPLYTMPDNQIAACEALVRWNHPVRGMI 495 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I + ++L R+ + W P + + +N++ ++ Sbjct: 496 PPDQFIGLAEENGLIHELGEWVLRAACREAVCWP-----PHVKVAVNVSPVQFRNSRFMA 550 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 +Q+ + + P R+++ +E++ + N +R +L +L +G S+ LDDFGT S LSY Sbjct: 551 IVQSALMEAGLVPHRLEVEITENIFVQNSAVNRDILRQLADMGCSVVLDDFGTGYSALSY 610 Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 L F +K + S + EK + I+++I+ +A++++ A+ + + L MG Sbjct: 611 LRLFSFQKIKIDRSFVKELPEKSASGIIQAIVSLAQSMDIPTTAEGVETQEQWARLHAMG 670 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C Q + P +I + L Sbjct: 671 CSEAQGFLLGRPEPVAAIRERL 692 >gi|85708868|ref|ZP_01039934.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1] gi|85690402|gb|EAQ30405.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1] Length = 730 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 143/544 (26%), Positives = 250/544 (45%), Gaps = 18/544 (3%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W+ D +P LGL + + G D + +R Sbjct: 46 WFWETDASGQLTYLSPKACKSLGLEAEELLGKELTEFM---ATDNSGATGSTSRPLKFRL 102 Query: 477 GRLQYEFRV---RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 R+ A N+ W I P ++ G+ G A D+T+ A Sbjct: 103 KSRSPISRLNVEITAANKEVWWEISAGPRLDAQGEFRGLHGTARDVTKALAEAREAEHAA 162 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D+LTG+ NR L + L +M++D+D++KK+ND LG GD++LV Sbjct: 163 QFDSLTGLANRARMTHMLDSTLTAFKQSKR-SVAIMLMDLDRFKKVNDTLGHPAGDELLV 221 Query: 594 SLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + R+G + + + RL G+ F +I+ ++ ++AD A M + ++ P + Sbjct: 222 QVAERLGRIYEQRGGEIGRLGGDEFQVIIPDMDDRGELADLANKMVQMVSQPYTIAGTRA 281 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKED 710 + SIG A I +SE++K+A+LA+Y AK G + + + R I++D Sbjct: 282 IIGCSIGIAVAPYDGIDASELIKSADLALYSAKDAGRGQFKFYSAELSAEADFRQRIEDD 341 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A+ N EL + Y PI+ ++ LEAL++W+HP G +S ++F+ +AEE MI I Sbjct: 342 LRDAIANDELAVHYQPIVDARTHKVSCLEALLRWEHPHRGFVSPTDFIPVAEEQGMIGEI 401 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L ++ D+ P I +N+++ ++ +I T PSRI+L Sbjct: 402 GEWVLRKVCDDLAHCP-----PEIRAAVNVSAIQFQGENFVGMVKEVIQDTGIKPSRIEL 456 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ESV +G+ E + +L++IGI L+LDDFGT S LSYL PFD +K + S + G Sbjct: 457 EITESVFVGDLEETIAQFKKLKRIGIRLSLDDFGTGYSSLSYLQNAPFDKLKIDQSFVRG 516 Query: 891 S---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 ++ +I+ MA + +A+ + + + + + G +Q + L F Sbjct: 517 CASEDANNGILVAAIVSMASAMGMETVAEGVEAKDEYNMVVQHGAGLLQGYLFSGALTFE 576 Query: 948 SILK 951 +++ Sbjct: 577 QLME 580 >gi|251772113|gb|EES52683.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Leptospirillum ferrodiazotrophum] Length = 855 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 135/576 (23%), Positives = 271/576 (47%), Gaps = 20/576 (3%) Query: 393 TGYFSQGIFSDG--ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 ++ I S+ R + + + D R V P G G Sbjct: 267 GRDVTERIRSEEVLRRYRHIFENAKEGILLMDESRKIVDVNPAFTATTGYTRDEAIGRNP 326 Query: 451 NWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 +H +D F + + + R G + E R + + + + + I Sbjct: 327 ---NMLHSGRQDLRFYESMWASID-RDGFWEGEIWNRRKSGEAYCEWLGVTAIKKEE-RI 381 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 YIGI +DIT++K++ + I+ AF D LTG+PNR++F +R+ +L+ + + +LR V Sbjct: 382 SGYIGIFSDITKRKEAEDRIVHMAFHDALTGLPNRRAFRERIGEVLERRSREPDLRFAVG 441 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++D+D +K++ND +G + GD++LV ++ RI E L+ L+RL G+ FG++L+ + Sbjct: 442 ILDLDGFKEVNDRMGHSAGDELLVLVSLRIKESLRSTGTLSRLGGDEFGLLLVGPDLED- 500 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + +++ P + + ++ S+G + +L +A+LA+Y K R G Sbjct: 501 --VTFDRIVSALSEPFEIGGERVEISGSLGVTFSPPDRGDVDPLLSHADLALYRVKTREG 558 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N F+ +R IK +L A+ EL L Y P + ++ + G+EAL++W+HP Sbjct: 559 NGWTPFQEEMEEALENRHRIKNELVRALSEKELVLHYQPQVDMVSGAVTGVEALVRWNHP 618 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 K G + F+ +AE+ +I ++ ++E W + + + +NI ++ L Sbjct: 619 KRGLLFPESFINVAEKSDLISSLGRSVMEEALAQQERW--KTGGLDLRVSVNIGARHFLS 676 Query: 808 NELCEGMQALISKT---LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + + A +S+ P +++ +E+ + + +++ ++ R + GI ++LDDFG Sbjct: 677 DNFLADLDAALSRHCRKGICPVTLEIEVTETEALKDLSKAQKIIKRCLETGIVVSLDDFG 736 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T + L+ L + +K + + ++K AI+ S++ + + + ++A+ I E Sbjct: 737 TGQASLTSLQRLSVGEIKIDKGFVGKIQDSDKDRAIVSSLVVVGRMMGIDVVAEGIETEA 796 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 D L MGC Q +A P+ ++ + + P Sbjct: 797 DGLLLIGMGCRVAQGYAIAKPMPAEAVPAWIADWTP 832 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 10/125 (8%), Positives = 34/125 (27%), Gaps = 6/125 (4%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR- 465 + V+ R + G + + G ++ ++++ + Sbjct: 30 LKALLDNVLAGVFLVTPNRGIRDVNRRGLFLFGYEAEELVGQS---TRLLYPDEKEFLQV 86 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L + + + + W + + G+ ++ D+TE+ Sbjct: 87 QNLYAKASGDTPTSLEDVPFVRKNGERIWADLSASRVR--VGEEDLFVVTVLDVTERHHL 144 Query: 526 LEGIL 530 + Sbjct: 145 QDEKQ 149 Score = 52.3 bits (124), Expect = 5e-04, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 12/154 (7%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L TV+ + + ER +L + D VW D P + GL Sbjct: 130 LFVVTVLDVTERHHLQDEKQLALDERNTLIM-ALPDGVWLKDGNGAWRIVNPAGLALFGL 188 Query: 441 A-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY------RRGRLQYEFRVRAADNQFH 493 + G L ++ + R V A D H Sbjct: 189 SGRTDWIGKTERELARMNP----PLAAAHLGCLTTDEEAWVRGSSTDATEPVVAPDGAIH 244 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + R P+ N +G + I D+TE+ +S E Sbjct: 245 LIESRKIPLFNEDGSRKSLVVIGRDVTERIRSEE 278 >gi|62289191|ref|YP_220984.1| sensory box protein [Brucella abortus bv. 1 str. 9-941] gi|82699128|ref|YP_413702.1| PAS domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023462|ref|YP_001934230.1| PAS-associated C-terminal domain protein [Brucella abortus S19] gi|254690514|ref|ZP_05153768.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 6 str. 870] gi|254696639|ref|ZP_05158467.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254731547|ref|ZP_05190125.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 4 str. 292] gi|260546486|ref|ZP_05822226.1| PAS-associated domain-containing protein [Brucella abortus NCTC 8038] gi|62195323|gb|AAX73623.1| sensory box/GGDEF domain/EAL domain protein [Brucella abortus bv. 1 str. 9-941] gi|82615229|emb|CAJ10176.1| PAS domain:GGDEF:PAS-associated C-terminal domain:PAC motif:EAL domain [Brucella melitensis biovar Abortus 2308] gi|189019034|gb|ACD71756.1| PAS-associated C-terminal domain protein [Brucella abortus S19] gi|260096593|gb|EEW80469.1| PAS-associated domain-containing protein [Brucella abortus NCTC 8038] Length = 703 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 139/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVEHKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EA I+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTCYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|256046006|ref|ZP_05448878.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1 str. Rev.1] gi|260563286|ref|ZP_05833772.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260153302|gb|EEW88394.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M] Length = 703 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTGDSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|295699665|ref|YP_003607558.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] gi|295438878|gb|ADG18047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] Length = 667 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 136/542 (25%), Positives = 245/542 (45%), Gaps = 11/542 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + GL + G W ++ +D + + + R + Sbjct: 129 DRHGRIQRFNRLAEELTGLKEEDIIGR-SVWTLFMSSDD-GSVSNQVSAHFFNRGEPYEI 186 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E R++ + ++ S S + I DITEQ+ + E ++ A D LTG+ Sbjct: 187 ERRIKTVHGERLFLFRNKFVRSGSGIEDQFLICSGTDITEQRLAQERLIEQATTDPLTGL 246 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 NR + +R+ ++ +A V+ +D+D +KK+ND G GD ++ ++ I Sbjct: 247 ANRNAIQERIQIAIEQAA--PGETVGVLFLDLDNFKKVNDHYGHVFGDRLICDVSDAIRN 304 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D LARL G+ F I+L ++ ++ + D A + + MP + E+ SIG A Sbjct: 305 CLNPGDSLARLGGDEF-IVLAAKGSAHGLEDIAQRILDRMRMPFAVGLVEVYTGCSIGIA 363 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 W T ++++A+ AMY AK G F R + + + +L +E + Sbjct: 364 RWPEHGETLESLIRSADTAMYVAKDEGKRTHRVFSPDMNRRVAEFMWLDTNLRRGLEEGQ 423 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y P + L + G EAL++W+ P+ G I +EF+ AEE +I + +++E A Sbjct: 424 FALHYQPKLNLATGAVQGAEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMETAA 483 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + W+ + + IN++++ L D + + P I L +ES ++ Sbjct: 484 KQAARWKAAGYD--LRVAINVSARQLTDTAVVRHFTEALQHASLDPCLIDLELTESCLIE 541 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897 N + L+ + R++G + LDDFGT S LS LG IP D +K + S A Sbjct: 542 NEAAAIELIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFTRSIHADMKAQA 601 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++RS++ +A+ ++ ++A+ I E + + +G DY+Q A P+ + L +R Sbjct: 602 LVRSMVAVAQELDFQVVAEGIETEAEEAFMKGLGVDYVQGFLYARPMPATDFERWLLDRR 661 Query: 958 PL 959 L Sbjct: 662 KL 663 >gi|237814680|ref|ZP_04593678.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|260756073|ref|ZP_05868421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella abortus bv. 6 str. 870] gi|260759297|ref|ZP_05871645.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella abortus bv. 4 str. 292] gi|260761019|ref|ZP_05873362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella abortus bv. 2 str. 86/8/59] gi|237789517|gb|EEP63727.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|260669615|gb|EEX56555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella abortus bv. 4 str. 292] gi|260671451|gb|EEX58272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella abortus bv. 2 str. 86/8/59] gi|260676181|gb|EEX63002.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella abortus bv. 6 str. 870] Length = 709 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 139/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVEHKDGTS 234 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EA I+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 472 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 587 DLRRLGVRIAMDDFGTCYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694 >gi|145593909|ref|YP_001158206.1| diguanylate cyclase [Salinispora tropica CNB-440] gi|145303246|gb|ABP53828.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Salinispora tropica CNB-440] Length = 731 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 133/582 (22%), Positives = 254/582 (43%), Gaps = 19/582 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A Q + R G+ + + + A +LG + RN Sbjct: 146 ARDEVEQALRDSEARFRAVFSGAAIGIGIGLVDGQIIDVNQVFADMLGYTIEEL--RQRN 203 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 H +D + V +R ++ E R D W + + + + +G Sbjct: 204 VSSLFHPDDAAGMWELYQQLVDGKRDSVRVEKRYYRKDGSAVWTDLAVSLVRHDDGHPRF 263 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + DIT++ + + + A D LTG+PNR F + L + D + V + Sbjct: 264 TVAVVEDITDRYELQQRLRFQALHDPLTGLPNRTLFFETLGVVFDNAGA--GRPVGVCFL 321 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKI 630 D+D +K +ND LG +GD +LV + R+ + + ++AR+ G+ F I++ + + Sbjct: 322 DLDGFKAVNDSLGHDLGDQLLVEIADRLSDCVAGSGHLVARMGGDEFVILVDDGESLDDV 381 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A ++A PI + + ++ V+AS+G + SE++K A+ +Y AK G Sbjct: 382 VSVAEAALAAVAAPIRIGDHQLMVSASVGIVECPVNTTDPSELMKAADTTLYWAKAEGRG 441 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + L A+E E L Y PI+ L+D + +EAL++W HPK Sbjct: 442 RWAVWDRERSAREIARSTLAAGLPTALERDEFVLDYQPIVSLLDGSMRAVEALVRWQHPK 501 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + ++F+ +AEE +I + ++L + RD +WR + + + +N+A++ + Sbjct: 502 LGLLGPAQFIGLAEETGLIVQLGEWVLRQACRDADAWRREFPEARLVVSVNLAARQVEHP 561 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + + ++ + ++L +ES VMG L RL +G+ L +DDFGT S Sbjct: 562 AIVDMVAGALTDSGLPAELLQLELTESAVMGTAGEPLRALHRLAGLGVGLAIDDFGTGYS 621 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS---------TEKRIAILRSIIPMAKNIETTIIAKDIY 919 L+YL +P +K G + G + + I+ +++ +A+ + + A+ + Sbjct: 622 NLAYLRRLPIRCLKLAGPFVEGLREGVTETATSHRDEQIVDALVRLARALGLLVTAEAVE 681 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK---ERFP 958 + + L + CD Q +P I L+ R P Sbjct: 682 TGVQAERLRVLRCDTGQGYWFGAPGPAGEITARLRGAAARNP 723 >gi|88703880|ref|ZP_01101595.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71] gi|88701707|gb|EAQ98811.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71] Length = 910 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 127/580 (21%), Positives = 268/580 (46%), Gaps = 8/580 (1%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q A + + + S+A +G W + + ++ +LGL Sbjct: 327 QQRQALESLNVELEEERSNLSVAQRMAGLGYWRCNPENGEFEASSELLHLLGLPPDHEFD 386 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 IH + RD F L S + ++ +R + + W+ IR S+ + Sbjct: 387 CSGFADTVIHPDSRDQFARDLASC-QRKDDSVENVYRAASPHHDEVWIRQFIRVESDPSI 445 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + D++ Q+ + + I A+ D+LTG+ R +RL ++ + Sbjct: 446 KGFHLVAAVQDVSRQRLAEQEIRRLAYFDSLTGLSQRGYLFERLHEMVRTARRRQEG-FA 504 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+DK+K+IND LG GD++LV++ R+ + D +ARL G+ F ++L + ++ Sbjct: 505 VLFIDLDKFKEINDSLGHDAGDELLVTVASRLRAAARESDFVARLGGDEFCMVLDNVSSE 564 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + +A+ A + ++ + + +T AS+G A + + ++ A+ AMY AK R Sbjct: 565 VDVAEVAQRLLDQLSAAVEIHGTTVTPMASVGIAIYPVDGEAAESIMNAADNAMYAAKRR 624 Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + +R+ + D+ AV+ E + Y P I L I G EAL++W Sbjct: 625 GDHSYLFHEHEISAEARERLRMSRDIRRAVKEDEFVVHYQPQISLESGAIEGWEALLRWQ 684 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G +S+ F+ E + ++ I ++++ ++ + W+ + P + INIA + + Sbjct: 685 HPERGLLSAYAFIDDIERIGLVSDIGRWVIDSVSSQLAQWQREE-RPHTRVSINIAPRHM 743 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + + ++ + + S S++++ +E + + E R +R +G+ + +DDFGT Sbjct: 744 SEGTVARDLREAMGRHGISASQLEIEITE-AGIQSGEEIREATLAVRALGVEIAIDDFGT 802 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 + L+ L + D++K + S + + +L SII + K+ ++A+ + + Sbjct: 803 GYASLASLRSLTIDSLKVDRSFIQFATTNAVDRRLLSSIIDLGKSFGYRLVAEGVETQEQ 862 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 ++ L MGC+ +Q + + ++++ +R +++ Sbjct: 863 LELLRTMGCELVQGYLFSQAVPAAEAVEMMDDRATGSQSS 902 >gi|302545149|ref|ZP_07297491.1| developmental regulator MorA [Streptomyces hygroscopicus ATCC 53653] gi|302462767|gb|EFL25860.1| developmental regulator MorA [Streptomyces himastatinicus ATCC 53653] Length = 547 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 132/544 (24%), Positives = 257/544 (47%), Gaps = 17/544 (3%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D + + P + +LG + L + + + R R+ Sbjct: 4 IDREGNVLDANPALGALLGADPAQLAARGAAALAELRED--ARAWNDYREVLLGHRERMT 61 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 R+ +D W I + +S + DI++++ + D +T Sbjct: 62 CTRRLHHSDGHALWAEITVEQAPDS----CSLLLSMADISDRRDLQGRLRHLQMHDPVTR 117 Query: 541 IPNRQSFLDRLTTILDLSA--TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 +PNR F +RL L+ A R + +D+D +K IND LG VGD +L ++ +R Sbjct: 118 LPNRNLFFERLAAALEAGAYDRAGTGRIGLCYLDLDGFKAINDTLGHRVGDRLLRAVAQR 177 Query: 599 IGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 + E D ++ARL G+ F +++ + + ++ + A ++ ++ P ++ + ++V+AS Sbjct: 178 LTECAAPGDHLVARLGGDEFALLVRESSGTEQVCELARSVLAALQRPFDVGGQRLSVSAS 237 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAV 715 IG ++ ++ +++ A+ +Y AK G F + L AV Sbjct: 238 IGVVERPAAGTHTTWLMQAADTTLYWAKEDGKARWTLFDPERNAHRMTRQALSSTLRPAV 297 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 E E L Y P++ L+D + G+EAL++WDHP++G +S + F+ +AEE I + ++L Sbjct: 298 EREEFVLDYQPLVGLVDGVVRGVEALVRWDHPQFGRLSPNRFVSLAEENGAIVPLGRWVL 357 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 R +W+ P+ + +N+A + + D++L + ++++T P ++L +ES Sbjct: 358 RTACRQARAWQQAHPRHPLVVSVNVAVRQVWDSDLVADVGTILAETGLPPRLLQLELTES 417 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG----- 890 VMG+ R L +L +G+++ +DDFGT S L+YL +P T+K +GS + G Sbjct: 418 AVMGSAGRPLQALQQLSDMGVAIAIDDFGTGYSNLAYLSRLPVSTLKLDGSFVQGFRAEE 477 Query: 891 -STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 I+R+++ +A + T++A+ + + L R+GCD Q + P+ + I Sbjct: 478 HPNPADETIVRALVELAHRLGLTVVAECVESAEQAERLGRIGCDTGQGWFYSRPVPPDRI 537 Query: 950 LKLL 953 +L Sbjct: 538 PPML 541 >gi|17988014|ref|NP_540648.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1 str. 16M] gi|265992417|ref|ZP_06104974.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella melitensis bv. 1 str. Rev.1] gi|17983758|gb|AAL52912.1| diguanylate cyclase/phosphodiesterase domain 2 (eal) [Brucella melitensis bv. 1 str. 16M] gi|263003483|gb|EEZ15776.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella melitensis bv. 1 str. Rev.1] Length = 709 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EALI+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 587 DLRRLGVRIAMDDFGTGDSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694 >gi|291566273|dbj|BAI88545.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 655 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 134/439 (30%), Positives = 229/439 (52%), Gaps = 5/439 (1%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +++ ++ + D LT + NR F+ L +++ + D + V+++D+D++K IND Sbjct: 174 RREEARLLIYKSTHDGLTDLYNRSYFMRELDEVVERAKEDPEYQFVVLLLDVDRFKIIND 233 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG VGD +L + R+ E + +ARL G+ F I+L NN +I+ A ++ + Sbjct: 234 SLGHQVGDRLLEGVGERLRECIPPWHTVARLGGDEFAILLDDLNNLNQISQTAQNIQSYL 293 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699 PI L E+E+ T SIG A S E+L++A+ A+ AK +G F + Sbjct: 294 QQPIVLGEQEVFSTVSIGIAISNVSYGNGKEILRDADTALSQAKSKGKACHVIFNPTMHR 353 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 DR+ ++ DL A+E EL L Y PII L E+VG EALI+W+HPK G +S S+F+ Sbjct: 354 QAWDRMQLENDLRHAIERQELQLHYQPIISLETLEVVGCEALIRWEHPKRGWVSPSQFIP 413 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALI 818 IAEE +I+ I ++L + + W+ P F+ +N+++ L + +L +Q+++ Sbjct: 414 IAEETGLIQPIGEWVLRSACQTLHRWQLMFPDGQPAFMSVNLSTYQLTNPQLVNKVQSIL 473 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T P R+KL +ES + E + L ++GI L +DDFGT S LS L + P Sbjct: 474 EETGCDPCRLKLELTESTIAEYAEIVVPQMRELSQLGIKLCIDDFGTGYSSLSRLYHFPI 533 Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 T+K + S + G E ++ I +I+ +A + +IA+ + + L GC Q Sbjct: 534 HTLKIDRSFIEGIDESHDQLKIAYAIVNLAHTLGLEVIAEGVETPEQMAVLQAWGCQLCQ 593 Query: 937 DSHVASPLGFNSILKLLKE 955 + + ++ K L + Sbjct: 594 GYLFSKAVDSQNMDKFLSQ 612 >gi|149374713|ref|ZP_01892487.1| Putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with PAS/PAC and Chase sensors [Marinobacter algicola DG893] gi|149361416|gb|EDM49866.1| Putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with PAS/PAC and Chase sensors [Marinobacter algicola DG893] Length = 908 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 143/602 (23%), Positives = 268/602 (44%), Gaps = 14/602 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L +D P ++G ++I +L+ V+ + G R G+ ++ Sbjct: 310 YLASDPRPPIVLGCGIVISLLMFLFVLTMIRGRIMAQIGAG----RYRAITEGAANVTLV 365 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D +P ILG ++G +H D ++ D V ++ Sbjct: 366 LDRDGTPRYASPSSQDILGFDPDKVYG--LELESLVHAEDWPQLKSGFDEAVKSPGKQMP 423 Query: 481 YEF-RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 R+R + Q+ M M G + + D+T+ K + + AF D LT Sbjct: 424 VIRGRIRDSQGQWRDMEGTFTAMLTVPG-VNGVVLSLRDLTQLKAAQTELHRLAFYDPLT 482 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+ NRQ F DRL ++ S + +M +D+D +K+IND LG GD++L +++ + Sbjct: 483 GLANRQLFRDRLNHVVRRSRRSEEP-AALMFLDLDGFKRINDTLGHDSGDELLKQVSQWL 541 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 ++ D +ARL G+ F ++L + A A+ + + I L + E+ +T SIG Sbjct: 542 TGCVREEDSVARLGGDEFVVLLSRISGPDAAGKVAEAILRRLCQRIRLNDHEVGITVSIG 601 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVEN 717 ++K A+LAMY AK G N + F + + + +L A+E Sbjct: 602 ITMIPHDSEDPGTLMKYADLAMYRAKELGRNTYQFFTPAMNIKAARRLLQQEELATALEG 661 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 L Y P + L E ++G+EA ++W HP+ G +S+ +F+ +AEE +I + L + Sbjct: 662 DRFVLHYQPKVDLESERVIGVEAFLRWHHPEKGLVSAQQFITLAEETGLIIRLGELALRQ 721 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 + + + + +N++ + L D+ + M+ +I++T SP R++L ++ Sbjct: 722 ACIQVQALERA-GFESLKMAVNLSVRQLTDSGFLDMMRQVITETGVSPERLELEMPAELL 780 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895 +P R LL L +G+ L LDDFGT L L +P D +K + + Sbjct: 781 NEDPRMLRELLVSLHDMGVCLILDDFGTGSCSLVALQQLPLDVIKIDHRFIRDIPYNVSA 840 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++I +A+ + T++A+ + + L GC Q + + PL ++++ L Sbjct: 841 TDVASAVIALARKLHLTVVAEGVETPQQLSFLRSAGCAQCQGNLFSYPLDEDALIGFLIR 900 Query: 956 RF 957 ++ Sbjct: 901 QY 902 >gi|295688296|ref|YP_003591989.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC 21756] gi|295430199|gb|ADG09371.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC 21756] Length = 610 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 115/435 (26%), Positives = 216/435 (49%), Gaps = 10/435 (2%) Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 ++ + I A D LT +PNR F LT L A + + V ID+D++K +ND Sbjct: 134 RRGVAQIARLAHYDPLTDLPNRVLFQKSLTEALARRARKGD-QLAVHFIDLDRFKTVNDT 192 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG +GD +L R+ ++ D +ARL G+ F ++ + A + ++A Sbjct: 193 LGHPLGDALLREAAERLRRCVREGDTVARLGGDEFAVVQTGLTDMAGATRLAARIVTAMA 252 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700 P +L ++ + AS+G ++ E+LK A++A+Y AK G F + Sbjct: 253 APFDLAGHQVVIGASVGVSAAPYDGEDVDELLKKADMALYRAKGDGRGAFHFFEQAMDEQ 312 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 R ++ DL A+++ E L Y P+ L DE + G EAL++W HP+ G +S ++F+ + Sbjct: 313 LQARRALELDLRRALQDGEFELFYQPLYHLGDERVTGCEALLRWRHPERGMVSPADFIPL 372 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE+ +I + ++L + W D + + +N++ D L + + ++ Sbjct: 373 AEEIGLIVPLGDWVLRAACAEAARWPDH-----VRLAVNLSPAQFRDRSLVATVVSALAT 427 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + R++L +ESV++ + + +L L+ +G+ +++DDFGT S LSYL PFD Sbjct: 428 SGLPAQRLELEITESVLLQDNAANMTMLHDLKALGVRISMDDFGTGYSSLSYLRSFPFDK 487 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + + + +AI+++++ + ++ T A+ + + + L GC IQ Sbjct: 488 IKIDQTFVRDILHDSDALAIIKAVLDLGASMGVTTTAEGVETQAQLDALRGQGCAEIQGY 547 Query: 939 HVASPLGFNSILKLL 953 ++ P + I K+L Sbjct: 548 FISRPAPADEIAKML 562 >gi|254502389|ref|ZP_05114540.1| hypothetical protein SADFL11_2428 [Labrenzia alexandrii DFL-11] gi|222438460|gb|EEE45139.1| hypothetical protein SADFL11_2428 [Labrenzia alexandrii DFL-11] Length = 729 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 126/536 (23%), Positives = 228/536 (42%), Gaps = 12/536 (2%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGR 478 D + + + G + + G + L H F + S Sbjct: 191 TDRAGRILDANDALVALSGYSRVELVGSPHSLLNSGHHPPEFWHAFWQQISS-----GQT 245 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + E R +W+ + P+ ++G I YI + DITE+K++ I A+ D L Sbjct: 246 WRGEICNRTKTGDLYWLDSIVAPLKGADGRIENYISVRFDITERKRAEARIHQLAYFDTL 305 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+ NR L + + L +D + + ID+D +K +ND G A GD VL +R Sbjct: 306 TGLANRDGTLAHIRSCLCGPGGEDRI-FALFYIDLDHFKAVNDKRGHATGDRVLAIAAQR 364 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + + L RL G+ F + + + ++ PI++ + + S+ Sbjct: 365 LQSVCPTDVFLGRLGGDEFAAFCP-VKTKQEAQAVSDLFQAALLEPIDVSGEQFALGLSV 423 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVEN 717 G A + +L A++AMY AK G G+ + ++ R + + LA+E Sbjct: 424 GIALAPYHAREADALLSRADMAMYQAKATGAGSVFYTQSLADALHRRQRVSDRFKLALEA 483 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 +LV+ P + L D G E LI+W + G + SEF+ IAEEL +I + ++L + Sbjct: 484 GLFHLVFQPQVHLEDGSFEGCEVLIRWRDEELGAVPPSEFIPIAEELGLITKLGEWVLAQ 543 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R + W + P + INI++++L+ + ++ ++ P+ +L +E + Sbjct: 544 TCRHMSDWAARGLSVPGRVAINISAQELMSSGYVANLKETVASFGCDPNAFELEITEHGL 603 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895 M + + L L +G + +DDFGT S LSY+ + D +K + S + Sbjct: 604 MRDIWAGKETLNELEDLGFRIAIDDFGTGYSSLSYVKHFSADELKIDLSFVRDMMVDAAS 663 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 AI+ + I MA+ + +A+ + + L M C Q + + PL Sbjct: 664 YAIVAATIAMAEKLGMQSVAEGVETKEQADALKAMKCPIAQGYYYSRPLEAQDFED 719 >gi|206601953|gb|EDZ38435.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum sp. Group II '5-way CG'] Length = 878 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 130/618 (21%), Positives = 269/618 (43%), Gaps = 14/618 (2%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 + + + ++ + + T I ++ D Sbjct: 266 FGVASASAFPIRKGEEIVALLVILSNRPNFFETESIGLLTRIAEAMSYALDDFERGQDLF 325 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-- 463 SL + ++ D+ + G + G + G + L + Sbjct: 326 LTSLVFDAVPEGIFITDVEGRITRVNEAFCRLSGFSFGELLGREADTLT----AGLEKGI 381 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + R G ++ F + D + + I + D + + D+T + Sbjct: 382 LCASIRDAIDQR-GTVEGIFELIRKDASSYMVEATITLVEEPGRDSRHVVLLLKDVTAKM 440 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + I A D+LTG+ NR + ++RL ++ S + ++ +D D +K IND L Sbjct: 441 ERERQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNQGA-MALLFLDFDDFKGINDTL 499 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G + GD L + R+ ++ DI+ARL G+ F +++ E++ KI FA + + Sbjct: 500 GHSAGDSFLKVIGHRLSGSVRPTDIVARLGGDEFVVVVSLESD-EKILSFAQKILDILGA 558 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P+++ + + + S+G A++ + ++L+ A++AMY AK++G N + F V Sbjct: 559 PVSIQSQTVQTSVSVGIATYPRDAESVEDLLRKADIAMYQAKNKGKNTWQFFNVEMEERI 618 Query: 704 RVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 R+ +++ L ++ +L + P I + +VG+EAL +W P G I + F+ +A Sbjct: 619 RLRFEQEQMLKTGLQEGAFFLHFQPQIDVFRRRLVGVEALARWPVPSGGTIGPASFIPLA 678 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE I A ++++ R I W P I + +N++S+ ++ ++S+ Sbjct: 679 EETGTILAFGEWVIQEAFRVIQFWSAS-GRPRIRVGVNVSSRQFWSPTFWTFLREILSRH 737 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + +E+V+M +PE + L L+++GI + +DDFGT S LSYL P D + Sbjct: 738 AELTRWLTFELTETVLMRDPETAGEQLSWLKELGIRIAIDDFGTGYSSLSYLSRFPVDEI 797 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + + + ++++II M K++ ++ + E +++ L +GC IQ Sbjct: 798 KVSQEFVMRMAKSPRDLKLVKTIIQMGKSLRLNLVGEGAETEEEVRMLEGLGCHVIQGFA 857 Query: 940 VASPLGFNSILKLLKERF 957 ++ PL + + + Sbjct: 858 LSRPLPVSEMESFWDQYL 875 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 3/111 (2%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 +G + D + V +LG + + H +D + Sbjct: 34 AGIGIVDAET-GRYVFVNARWCKMLGYEPQEL--SRLSIRDVTHPDDWPKTEACIREAQE 90 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R E R + W + +R + GI D ++K+ Sbjct: 91 GLRETYFVEKRFLRKNKTVFWGFLLVRSFRDPVTGNRLLNGIILDFDDKKR 141 >gi|145298007|ref|YP_001140848.1| GGDEF/EAL domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850779|gb|ABO89100.1| GGDEF/EAL domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 816 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 120/559 (21%), Positives = 251/559 (44%), Gaps = 10/559 (1%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ++ + + + D R ++ P + + G + +H Sbjct: 259 DKLRQANVVFDTTAEGIIIMDGQRQIISVNPAFCNMTQYEPDEIVGK--SLEAIMHPRRH 316 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + E D + + + +S + Y+ +DI+ Sbjct: 317 TDIDYPWHTLLPGSHA-WHGEMMCLRKDGDYFTSWQHVSAVYDSRHNTAHYVITFSDISA 375 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K+ + A+ D LT + NR +RL + + + + ++ ID+D +K IND Sbjct: 376 IRKAEAQLNHLAYHDPLTELGNRNLLQERLELEIKTAQLNRQ-QLALLFIDLDGFKLIND 434 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG GD +L L RI + L+ D+ RL G+ F +++ ++A A + + Sbjct: 435 NLGHRAGDQLLKLLAGRIRQSLRHNDVAIRLGGDEFLVLIPYFEQQDELAQLAEQLLARL 494 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699 P+ L ++ ++ASIG A + + ++ A+ AMY AK +G N + Sbjct: 495 REPVELEHEQVAISASIGIALYPEHARSPDALVSAADNAMYEAKSQGRNGYLFYSPDMAE 554 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 +R+ +++ L A++ +L ++Y P+ L + + GLEAL++W HP G I+ + F+ Sbjct: 555 QTRERMSLEQGLLKAIDQHQLCILYQPMTDLANNRLSGLEALLRWQHPSEGMIAPARFIP 614 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I+ I +++ + +W P + +N++ +++ E + A+++ Sbjct: 615 VAEECGLIEQIGEWVMRTACQQGQAWLAAGLAVP-RLSVNVSVREMRAIGYVERVAAILA 673 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + R+++ +ES ++ + S L RL+ +G+ + +DDFGT S LS L +P D Sbjct: 674 ETGFPAERLEIEVTES-IIQRVDHSLQLFTRLKALGVQIAIDDFGTGFSSLSLLKSLPID 732 Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + + + + + + R+II +A ++ + A+ I + + L + C Q Sbjct: 733 RIKIDQTFVQALPDDKHSRELCRTIINLADSLGMAVTAEGIETQAQRQFLQSLHCQEGQG 792 Query: 938 SHVASPLGFNSILKLLKER 956 + PL + L R Sbjct: 793 YLFSHPLTEPHLAAQLTPR 811 Score = 68.1 bits (165), Expect = 7e-09, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 6/130 (4%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 +R LA+ VW+W + DR+ + +LG A+ G + N++ + Sbjct: 142 QRLQLAMSAGQIGVWEWHVAEDRLQFDGQVERLLGTAANQFQGGMDNFIKRFDPVSGEQL 201 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 RT L+ L + W+ + ++ ++ R +G+ +D T++ Sbjct: 202 RTALN-----GTAPLHLTLSYLGPNQMRGWVDLHADHVAATDTQGRRIMGVIHDATDR-C 255 Query: 525 SLEGILCNAF 534 + E L A Sbjct: 256 NQEDKLRQAN 265 >gi|91776772|ref|YP_546528.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] gi|91710759|gb|ABE50687.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] Length = 617 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 129/442 (29%), Positives = 236/442 (53%), Gaps = 8/442 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT++K++ A D LT +PNR F+DRL L ++ N + ++ ID+DK+K Sbjct: 168 ITQRKQANL--FYLAHFDQLTKLPNRVLFMDRLAMTLAEASRT-NAQVGLLFIDLDKFKH 224 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 ND +G A GD +L++L + + D +ARLSG+ F II+ S + + + Sbjct: 225 FNDSMGHAFGDQLLIALAGILARCSREMDTVARLSGDEFTIIVDSISGQKDLDILCWRIL 284 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++ +P ++ REI ++ASIG A + ++ ++ A+ AMY AK G N + Sbjct: 285 DALKLPQQIMGREIFISASIGTAIYPLDDEDANNLMIKADAAMYEAKRNGRNTYRHYAAG 344 Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 DR+ ++ DL LA+E +E L Y P I L ++VG EALI+W HP+ G ++ Sbjct: 345 MQLYSLDRMSLETDLRLAIERNEFELYYQPQIALDSGQVVGKEALIRWHHPQRGLLTPIH 404 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE +I AI +++ R +W + P+ I +NI++ ++ C+ ++ Sbjct: 405 FIEIAEETGLIVAIGQWVISEACRQHQAWLQE-GFQPMRISVNISAMQFYQSDFCDMVEH 463 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T +P+ ++ +ES+ M + + L +L ++GI L +DDFGT S LSYL Sbjct: 464 ILKETRINPAYLEFELTESMFMQDADAVVRTLHQLSRLGIKLAIDDFGTGYSNLSYLRKF 523 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + G + I+++I+ +A+++ ++A+ + ++++ GC + Sbjct: 524 PIDRLKVDQSFIKGIEREPINVEIVKTIVALARSMSLELVAEGVETDVELHWAESSGCTF 583 Query: 935 IQDSHVASPLGFNSILKLLKER 956 +Q + PL + ++E Sbjct: 584 VQGYRFSQPLPAEKFTRWVREY 605 >gi|241766210|ref|ZP_04764110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] gi|241363709|gb|EER59086.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] Length = 589 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 133/597 (22%), Positives = 270/597 (45%), Gaps = 24/597 (4%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L+GG V ++ ++ +G D E + D++++ + Sbjct: 4 LLGGSVWLLATARERALRLARGMTSELRGTRDDLE---STLNAIPDLLFELGLDGRIHHL 60 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 A +L + + G + + L + +++R+ + Sbjct: 61 RHSRAALLPAPAQMLVGQ--RMQDIVAPDAAAGCLAALQAAHDT-GHSAGHQYRL-GSGG 116 Query: 491 QFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 W + I N+ G+ R+I ++ DITE+K S A+ D LTG+PNR+ LD Sbjct: 117 DERWFELSIARKENAAPGEAPRFIALSRDITERKLSEARTYHLAYFDALTGLPNRRMLLD 176 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 R+ LD + + ++ ID+D +K+IND G ++GD +LV + +R+ +LL DI+ Sbjct: 177 RMERSLDAARRAGQV-GALLFIDLDNFKQINDARGHSLGDLLLVQVAQRLVDLLAPGDIV 235 Query: 610 ARLSGNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 ARL G+ F +++ + A +R ++ P + + + TASIG + Sbjct: 236 ARLGGDEFVVLVHDLAGGMQDAGPAAMAVAETLRVALEAPYTIHQHLYSSTASIGITLFP 295 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722 ++L+ A+ AMY AK G N + + + +R+ +++DL A +L Sbjct: 296 KPDEGVEDLLREADTAMYRAKDLGRNRIRFYEAAMQADVQERLTLEQDLKNAAAEGQLAA 355 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 P + +VG E L++W+HP G++ + F+ +AE +I + +M+ + + Sbjct: 356 FVQPQVNAA-GVVVGGELLMRWNHPVRGSVPPARFIPVAEASGLILRMGDWMILQACETL 414 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + + I +N++ + ++ E M+ ++ T +P+ + L +ES+++ N + Sbjct: 415 ARLQAAQRD--LSISVNVSERQFRQDDFVERMRGVLVSTGANPAHLILEVTESLLIENLD 472 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 + + LR++G+ ++DDFGT S L+YL +P +K + S + + AI++ Sbjct: 473 DTIARMTELRRLGVRFSIDDFGTGYSSLAYLKRLPLYELKIDKSFVQDAPHDPNDTAIVQ 532 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 SII +A+++ ++A+ + L C+ +Q P + + L + Sbjct: 533 SIISVARHLNLHVVAEGVETRAQADFLVASQCNGLQGYLFGRPEP---LQQWLARQL 586 >gi|254456809|ref|ZP_05070237.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] gi|207085601|gb|EDZ62885.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium GD 1] Length = 671 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 136/436 (31%), Positives = 245/436 (56%), Gaps = 9/436 (2%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 +++K+ + A D+LTG+PNR +++D++T++++ + + ++ +D+D +K IN Sbjct: 235 KERKARYELEYFANHDSLTGLPNRHAYIDKITSMVNKNKNN----FALIFMDLDNFKTIN 290 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L + +R+ +K D+L+R G+ F + + + L I I + + Sbjct: 291 DSLGHTLGDMLLQKVAKRLKNEIKEYDMLSRFGGDEFVFLFSNVQSELTIEKTMIKIHEV 350 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P L E+ TASIG A + + +L+NA++AMY AK G + F Sbjct: 351 LKKPFILNTYEVYTTASIGIAIYPDDAQDAELLLRNADVAMYDAKQSGRSKYSFFNADML 410 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 S+R+M++ +L A+EN+EL+L++ P + L +E+IVG+EALI+W HP G IS +F+ Sbjct: 411 NLSSNRLMLESELHKALENNELFLLFQPQVSLWNEKIVGVEALIRWQHPTKGLISPLDFI 470 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAE +I I +++++ + W+D +M + IN+++K +L +L ++A I Sbjct: 471 PIAENSGLIMPIGEWIIDQACDQLALWKD-THMSEATLSINVSAKQVLHQDLYSYIEAAI 529 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T ++L +ESV+M N + +L RL+K+G+S+ +DDFGT S LSYL +P Sbjct: 530 ERTKIDGRFLELEITESVIMENINETVRILSRLKKLGVSIAIDDFGTGYSSLSYLKKLPI 589 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + + + IAI +II M+K++ I+A+ + I+ L CD Q Sbjct: 590 DKLKIDREFIKDIPNDKDDIAITNAIISMSKSLSLKIVAEGPETKEHIEFLQNSKCDIAQ 649 Query: 937 DSHVASPLGFNSILKL 952 + + P+ + KL Sbjct: 650 GFYYSKPITIVEVEKL 665 >gi|222112018|ref|YP_002554282.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] gi|221731462|gb|ACM34282.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax ebreus TPSY] Length = 630 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 131/552 (23%), Positives = 250/552 (45%), Gaps = 14/552 (2%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDR 461 ER A+ + D + D + + TI G + + G + L +H Sbjct: 70 LERA--AMDAAPDGIVLADRQGRILMVNAPMETISGYTNAQLCGQSIDLLVPVHARPE-H 126 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 R + + ++ D + I + S G + + D+++ Sbjct: 127 GQHMQRYHQSPSRRPMGMGRDLWLQRRDGSQVPVDIALGHSSAHGGTV---VAFVRDVSD 183 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 ++ + A D LTG+ NR F RL + A + ++++D+D +K IND Sbjct: 184 LRRLEARMHYQATHDTLTGLLNRWKFGQRLEQAIAEQAAAQSPPFALLLLDLDDFKAIND 243 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G A GD VL + RR+ L DILARL G+ F ++L + + A + +++ Sbjct: 244 GYGHAAGDQVLQEVARRLRGALGTGDILARLGGDEFTVLLPGVACATQAECVAARLMQAL 303 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 +P + E+ AS+G A ++ +L+ A++AMYHAKHRG + + S R Sbjct: 304 CVPCRVQGFELNFGASMGIALCPQDAGDAATLLRYADMAMYHAKHRGRANFAFYAPSMGR 363 Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + + L LA+ L L Y P + + +VG+EAL++W P+ G +S F+ Sbjct: 364 KMAEKIQLHDRLKLALAYGGLTLHYQPQVEVATNRMVGVEALLRWHDPQLGEVSPERFVP 423 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AE +I + +++ R I +W Q + + +N++++ L +L E + + Sbjct: 424 VAEATGLILELGAWVMAAACRQIAAWERQG--MRLRVAVNLSAQQLRQTDLVEQVARNLR 481 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 P ++L +ES + +PE++ +L LR +G+++ LDDFGT S L+YL +P Sbjct: 482 THHVPPELLELEVTESEALADPEQACQVLNELRALGVAVALDDFGTGHSSLAYLKRLPVS 541 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + M ++ ++R+++ +A + ++ + + ++ L M C Q Sbjct: 542 HIKVDREFMRNVPASGGDTTLVRAVVALAHTMGLRVVVEGVETREQLQFLREMQCACYQG 601 Query: 938 SHVASPLGFNSI 949 A L + + Sbjct: 602 WLFAKALSPDDV 613 >gi|330826273|ref|YP_004389576.1| diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] gi|329311645|gb|AEB86060.1| diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans K601] Length = 887 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 147/679 (21%), Positives = 271/679 (39%), Gaps = 40/679 (5%) Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF--IWFIGLWMA 357 + + +A L + + + L+ A L++ +W Sbjct: 218 APWDAPERQGLAAPPLQEMGARGRHTGFWQARARLSGQPALVAARPLLYPDLWITASLPR 277 Query: 358 ITKRLDNDIIQPALVGGLVLIVILI---GFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 T A+ GG +L + G ++ Q + AV Sbjct: 278 STALAAWKQDAAAVGGGALLFGACLVAAGILATVYLRRMHRARQSVAGAKATLDQAVGAM 337 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSM---HGPIRNWLPYIH--------INDRDN 463 D R V + +G++ R +H + R Sbjct: 338 VSGFVLLDPARRIVQWNRPFEEMFPWLAGTVAVGLPYRRVLETTVHYHLPGASAQDKRAW 397 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 L + Q + F + R P + + +D+T+ + Sbjct: 398 VERRLQQQRDPKGTHEQC-----LPNGHFIQITERATPE-------GGLVILFHDVTDLR 445 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + I AF D LTG+ NR+ LDRL + R V+ ID+D +K +ND L Sbjct: 446 LAAAEIEQLAFYDQLTGLSNRRLLLDRLGQACAAAQRAGE-RGAVLFIDLDYFKTLNDTL 504 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMR 638 G +GD +L + RR+ ++ D +ARL G+ F ++L A A + Sbjct: 505 GHEMGDQLLQQVARRLQGCVRAGDTVARLGGDEFVVLLAGLPADAAEAALLARGVADKIV 564 Query: 639 KSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + P + + + S+G + + T+ E+LK A++AMY AK + G+ + F Sbjct: 565 HLLGRPYQIAGQTYHGSFSVGATLFGELPQTTAGEVLKQADIAMYQAKAQRGSTLRFFEP 624 Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S+R ++ DL A+ + L P +VG E+L++W HP G + + Sbjct: 625 GMQAAISERAQLEADLQQAIGAGQFLLHLQPQYDGA-GAMVGAESLLRWQHPVHGLVPPA 683 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ +AE+ +I I ++L + WR ++ + + +N++++ ++ E + Sbjct: 684 RFIAVAEDSELIVPIGRWVLRSACELLARWRHAPHLRDLSLSVNVSARQFRQDDFAELVV 743 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 L+ T R++L +ES+V+ + E S + RLR G+ +DDFGT S LSYL Sbjct: 744 RLLQDTGAPAHRLELELTESLVLEDVEDSIAKMHRLRVKGVRFAVDDFGTGYSSLSYLTR 803 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P +K + S + + ++++I+ MA+N+E ++A+ + E L R GCD Sbjct: 804 LPLHRLKIDKSFVHHLGESHSDDVVVQTILGMARNLELEVVAEGVETEAQRAFLARHGCD 863 Query: 934 YIQDSHVASPLGFNSILKL 952 Q +A P+ + + Sbjct: 864 LYQGYLLARPMPVAQLEAM 882 >gi|317131843|ref|YP_004091157.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Ethanoligenens harbinense YUAN-3] gi|315469822|gb|ADU26426.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Ethanoligenens harbinense YUAN-3] Length = 865 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 132/479 (27%), Positives = 235/479 (49%), Gaps = 14/479 (2%) Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIG-IANDITEQKKSLEGILCNAFQDNLTGIP 542 R+ A R +++R + I D + ++ E I A+ DNLT +P Sbjct: 395 RLILASGTSGCEWDTGRV------NVIRALAQIIADGLAKVRAYEKIEFMAYYDNLTKLP 448 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR F T + +A + VM +D+D +K IND +G GD ++ + + + Sbjct: 449 NRSMFYKEAGTAI-RAAQQGARQVGVMFLDLDSFKSINDTMGHQTGDRLIRDVAQTLSRQ 507 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L +LAR G+ F ++ + +I A + P + E+ +TAS+G A Sbjct: 508 LSDMAVLARFGGDEFLVLCPAGQGEAEIRMIADRIMTVFKRPFLIKGNEVFITASMGIAL 567 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSEL 720 + ++K+A++AMY AK +G N R + V++ DL A++ +EL Sbjct: 568 FPQDGEDPESLIKHADIAMYQAKEKGKNQYAICSAEMKRVVQENVLLANDLYHALDRNEL 627 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 + Y P + + IVGLEAL++W HP G + S F+ +AE+ +I I ++LE R Sbjct: 628 EVYYQPQVDIRFGRIVGLEALLRWHHPSLGMVPPSVFVPLAEQTGLINPIGRWVLETACR 687 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 W + P+ + +NI+ LL+ ++ + + ++ +T P ++L +ESV + Sbjct: 688 QCRRWYE--GDQPVHMAVNISIVQLLNADVADQISRILRQTGLEPHALELEVTESVTLRE 745 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898 E + +L +L+ +GISL++DDFGTK S L+ L +P D +K + + G EK AI Sbjct: 746 TEATIYVLQQLKALGISLSIDDFGTKYSSLNRLKQLPIDKLKMDIQFVRGIGRGEKDRAI 805 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +R+II +AK+++ +IA+ + + + L C+ +Q + P+ +LK Sbjct: 806 VRAIINLAKSLDLRLIAEGVETQAEWDFLKENLCNEVQGYYYYKPMPAEQCGAILKHHN 864 >gi|95930028|ref|ZP_01312768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95133997|gb|EAT15656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 1092 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 125/438 (28%), Positives = 229/438 (52%), Gaps = 6/438 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + + + AF D LT +PNR F + L + + +++ ID+D++K IND L Sbjct: 644 EHRKQLSYLAFHDPLTQLPNRLRFTEVLEAAVGDAEGHGRY-LSLLFIDLDRFKNINDSL 702 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G ++GD +L ++ RR G L+ D+LARL G+ F I+L + + AD A + +++ Sbjct: 703 GHSIGDKLLQAVARRTGSLIDSADVLARLGGDEFAILLFNCVTPVVGADTAQRVIDALSQ 762 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P + + + V+ASIG E++K A++AM+ AK G N + + S Sbjct: 763 PFQIDDYSLHVSASIGITVAPVDAREPDELIKCADIAMFKAKDAGRNTYKFYERSMNLKT 822 Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++++ DL A+ +L L Y P + L IVG EAL++W+HP+ G +S EF+ +A Sbjct: 823 HELLLLENDLRHALSRDQLELYYQPQLDLQSNCIVGFEALLRWNHPERGLVSPLEFIPLA 882 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I ++ ++L R I +W ++ + + +NI+++ +L ++ ++ +T Sbjct: 883 EETGLIVSMGEWILRSACRQIRTWNEEHGRQ-LRVAVNISARQFHHYDLVHCVEKVLEQT 941 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 ++L +ES++M + + S + RL+K+G+ L +DDFGT S LSYL P ++ Sbjct: 942 GVPTEWLELEITESLLMYDIQSSIETMMRLKKLGVRLAIDDFGTGYSSLSYLKKFPICSL 1001 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + AI S + +A ++ ++A+ I + + L + GC + Q Sbjct: 1002 KIDKSFVDDLLTDASDAAIAESTLALASKMDLMVVAEGIEQQEQLDYLQQRGCQFGQGYL 1061 Query: 940 VASPLGFNSILKLLKERF 957 ++ PL + +ERF Sbjct: 1062 ISRPLPVAQCTQFCRERF 1079 Score = 46.5 bits (109), Expect = 0.020, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 27/160 (16%) Query: 385 TVIQHVLATGYFSQG----IFSDGERQSLAVLGSGDIVWDWDIV-----RDRVTTTPDIA 435 + QHV A G Q + + +R D V+ + + V + Sbjct: 337 ALAQHVRAMGRAIQERETELSRERDRFQALFDNVNDAVFMCSVDEEQRVGNFVEVNGVAS 396 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRT--ILDSFVGYRRGRLQY------EFRVRA 487 +LG + D D L +G E + Sbjct: 397 DLLGYSRAEFLQMT--------PMDIDTTIDSLSLRDHIGSISMESDQPIPGLIETTMVT 448 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + I ++P+ + +L + +A +IT++K++ Sbjct: 449 KQGRKMPFEINLQPLRLDDQQML--VCVARNITDRKQAQR 486 >gi|107104117|ref|ZP_01368035.1| hypothetical protein PaerPA_01005190 [Pseudomonas aeruginosa PACS2] Length = 899 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 150/604 (24%), Positives = 274/604 (45%), Gaps = 18/604 (2%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + +N + Q + + ++ H + +F Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 AV S D P +I ++ + + LP + + Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S + + Q EFR R +++ +W + + + + G++ YIGI DIT+ K + + Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A++DNLTG+ NR F+ L L+ S + +++++DID +K+IND LG Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LVSL RR+ L LAR + N F ++L + K A + + P+ + Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707 + I +T SIG AS ++K A LA++ AK G + V+ F + + Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641 Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +L A+ +EL + Y P + L +++GLEAL++W HP+ G I F+ +AEE Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I +++ R + + I IN++ K D +L + A++ + Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S+++L +ES+++ + +R L RL+ +G++L +DDFGT S LSYL P D +K + Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820 Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + ++ + I ++I M N++ ++A+ + + L R CD Q P Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMTHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880 Query: 944 LGFN 947 + + Sbjct: 881 IPSD 884 >gi|138894050|ref|YP_001124503.1| sensory box/GGDEF family protein [Geobacillus thermodenitrificans NG80-2] gi|134265563|gb|ABO65758.1| Sensory box/GGDEF family protein [Geobacillus thermodenitrificans NG80-2] Length = 802 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 140/584 (23%), Positives = 266/584 (45%), Gaps = 23/584 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 V I +L+ I + + + ++ +R + + V V Sbjct: 230 AVSIYLLVLHRQIGRKV-LAAHKKTLAANEQRLRQLAEMTMEGVIVC-ASGKIVEVNEAA 287 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + ++ IND ++ S R + E R D Sbjct: 288 CRLLGYRESELV--------HLPINDVVVDGSMRPSCSNNGVERFEIELR--RKDGAVFP 337 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 I ++ + G + + + D+T QK++ E + D LTG+ N+++ + Sbjct: 338 AEI-VQHCYDDEGQKVTVVAV-RDLTAQKQNEEPMHDIVSHDELTGLANKEAMYKVVERR 395 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L + + VM++++ K IND G AVGD+VL+ L RR E + + R SG Sbjct: 396 LADAKR-FHREAAVMLLEVTSIKTINDFYGYAVGDEVLLHLARRWSE--QEGITVGRWSG 452 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 N F +L +++ K + A + + PI + E+ VT ++G + + + ++ Sbjct: 453 NEFIAVLPD-SSNEKAEEAAKRLIEVADEPIAVNGLELYVTVNVGISVYPKDGEETKTLI 511 Query: 675 KNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 + A++A Y A+ + + ++ +++ ++ DL A+E E L Y P IRL D Sbjct: 512 RKADIARYEAREKVVSDFLFFNEPMADRLHEKMAMERDLRRALEREEFELYYQPQIRLYD 571 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +++G+EAL++W HP+ G I S F+ IAE+ MI IN +++ + DQ Sbjct: 572 RQVIGMEALVRWRHPEKGFIPPSLFIPIAEQTGMIIRINEWVIRTACQQTKQLIDQFPH- 630 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +N++ + + + L++ T P + L +E + M + E + +L +L+ Sbjct: 631 -LSVSVNLSPYEFESRRFVDKLARLLADTGLPPHHLDLEITERMTM-DTEHAFDILSKLK 688 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT 912 +G+++++DDFGT S LSYL +P D +K + S + K+ IL SII + NI Sbjct: 689 SLGVTISMDDFGTGYSSLSYLTDLPIDRLKIDRSFVQHIQGKKDVILPSIIRLGHNIGVK 748 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++A+ + E + L CD Q + + PL + ++ L E+ Sbjct: 749 VLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYGEFVRFLTEQ 792 >gi|254695003|ref|ZP_05156831.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 3 str. Tulya] Length = 703 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 139/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVEHKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRFLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EA I+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTCYSSLSYLHAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|95931192|ref|ZP_01313914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95132754|gb|EAT14431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 893 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 152/591 (25%), Positives = 275/591 (46%), Gaps = 37/591 (6%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT------------ 429 + A Q + +R + V + + V Sbjct: 316 FILESFIDIQARKLAEQALRESEQRYRSLYTAMREGV----AIGELVYDAHGVACDYILH 371 Query: 430 -TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + +LG+AS + G + + + ILD V Y + E+ + + Sbjct: 372 DVNRAFSEMLGVASEELVGHRASEFYHGAP----PYIHILDEVVKYGIPK---EYELPLS 424 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 D + + + RP + R+ I ND+T+ KK+ + I A+ D LTG+PNR Sbjct: 425 DLEKVFHVSVSRP------EKERFACIINDVTDSKKAQQEIERLAYYDTLTGLPNRVLIK 478 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 DRL + + V+ +D+D +KKIND LGI GD +L +++R+ L+ D Sbjct: 479 DRLQQAVAQAQRS-RALVGVLALDLDHFKKINDSLGIGCGDQMLKLVSQRLKGHLRQGDS 537 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 +AR+ G+ F I++ + I A + +A P+ + ++ T S+G + + + Sbjct: 538 VARMGGDEFVILITGIKSQNDIVTAAGKILDLLAEPVTIDGHDLVSTGSLGISVYPTDAD 597 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHP 726 +LK+A+ AMY AK G N + + ++ +R+ + DL A+ +EL L + P Sbjct: 598 EVDLLLKHADTAMYQAKETGRNLYQFYSPDMNERAFERLFLDSDLHRALARNELELYFQP 657 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I L +VG EAL++W+H G IS F+ +AEE +I I +++E R W Sbjct: 658 QIDLAQGHVVGAEALLRWNHATKGQISPVVFIPLAEESDLILDIGGWVIEEACRHARQWH 717 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 DQ + + +N++++ +L + + ++ +T ++L +ES++M PE +R Sbjct: 718 DQ-GYTDLRVAVNLSARQFRS-DLPDIVARVLHETGLPAHLLELELTESLLMERPELART 775 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 +L +LR +G L++DDFGT S LSYL + P D +K + S + I+ +II Sbjct: 776 ILNKLRYLGNHLSIDDFGTGYSSLSYLKHFPIDRLKIDRSFVKDLNVDPDDAIIVEAIIA 835 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +A + ++A+ + + + + GCD IQ VA P+ + L+ L++ Sbjct: 836 LAHGLRLNVVAEGVETSDQFEFMRQRGCDEIQGYVVARPMPADDFLRYLQK 886 Score = 46.5 bits (109), Expect = 0.022, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 11/145 (7%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + +G + + + P + + G L + Sbjct: 91 LVVARDELEAIFNATGAAIIVLNDELQLHSCNPMAVKRFSIDAEKALGCH---LEQAIPD 147 Query: 460 DRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 L+ R+GRL E + W + P+ NSN + Y I +D Sbjct: 148 CHSLLSQNFLNELANCRQGRLVIEIAFHDS-----WYSLVATPVRNSNDQVSFYALIFSD 202 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPN 543 ITE+K++ E L A LT I N Sbjct: 203 ITERKRT-EESLVEAET-RLTEILN 225 >gi|157960295|ref|YP_001500329.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC 700345] gi|157845295|gb|ABV85794.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella pealeana ATCC 700345] Length = 696 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 137/560 (24%), Positives = 261/560 (46%), Gaps = 16/560 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPY 455 + + ++ + + ++ D + P A +LG + + N Sbjct: 124 QEEMQTNDPLLKAVLESAAVAIYAIDDKGKCIFANPICAQLLGYTSPEQLLN--FNMHEL 181 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 I+ N + ++ + G ++ + AD + + +P+ + + Sbjct: 182 IYQN-----HSCTEATLPLSNGEVKEDI-FWRADGSSFPVDYKSQPLVLQHNR-NGAVIS 234 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D +E+ ++ I A D LT +PNR L RL +++ S + V+ +D+D Sbjct: 235 FYDNSERLEAEALIRHQAHYDTLTELPNRFLALKRLEQLVEASERSGQM-IAVIFLDLDD 293 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +KKIND LG GD +L+S ++R+ + D + RL G+ F I+L +++ A Sbjct: 294 FKKINDSLGHEAGDQLLISASKRLLNATRSEDTVGRLGGDEFIILLDGLSSASDAQPLAE 353 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + P + R++ +TASIG A + + TSSE+L+NA+ AMYH K G N F Sbjct: 354 NLIGGFRKPFYIDNRQLVLTASIGIAIYPNDGETSSELLRNADSAMYHTKSIGRNTYSYF 413 Query: 696 RVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + + +E + A+E EL + + + D I+G EAL++W++P GN+S Sbjct: 414 THAMNKEVSRRLAIEEQIHGALERGELQAHFQIQLDIRDGSIMGAEALLRWNNPTLGNVS 473 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +EF+ IAE+ +I+ + F+L+ +W+ N + IN++ + + L + Sbjct: 474 PAEFIPIAEQTGVIEPMGEFILKCALEAARTWQKLFND-KFRVAINLSPRQFRNPNLVQL 532 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + + K P ++L +E V++ + L +L G +++DDFGT S LSYL Sbjct: 533 ITDQVYKFGMRPDDLELEITEGVLLSGHAYTLDALKQLSNAGFCISMDDFGTGYSSLSYL 592 Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PF +K + S ++ + + ++ + I MA + +IA+ + + + EL+ M Sbjct: 593 RTYPFQILKIDRSFISDMNKDGKSNELIIATIEMAHALGIRVIAEGVETQEQLDELSFMM 652 Query: 932 CDYIQDSHVASPLGFNSILK 951 CDY Q ++ + +LK Sbjct: 653 CDYAQGFLISKAVPLTELLK 672 >gi|261215348|ref|ZP_05929629.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella abortus bv. 3 str. Tulya] gi|260916955|gb|EEX83816.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Brucella abortus bv. 3 str. Tulya] Length = 709 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 139/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I D V RR L E +V D Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVEHKDGTS 234 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 235 RTMRIIKSSIPPVEGNEPRFLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EA I+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 472 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 587 DLRRLGVRIAMDDFGTCYSSLSYLHAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694 >gi|126660202|ref|ZP_01731319.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110] gi|126618504|gb|EAZ89256.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110] Length = 964 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 128/484 (26%), Positives = 243/484 (50%), Gaps = 7/484 (1%) Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R W ++ P + + + + + DIT++K + E + A D LTG+PNR Sbjct: 480 RNPSIAPIWTLVNAFPSFDDQNCLTQVVVLLLDITDRKLAEEQLRYRALHDALTGLPNRT 539 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 +RL + + V+ ID+D++K IND LG VGD +L+ + + ++ Sbjct: 540 LLTERLDHAIQRVKRYPDKLFAVLFIDLDRFKVINDSLGHLVGDQLLIYIADTLKSHVRS 599 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D +ARL G+ F I+L ++ ++ + + I P+ ++ + + +ASIG A +S Sbjct: 600 CDTVARLGGDEFVILLEDLSSPHEVIQVIERIEEDIKKPVQVMNKTLFTSASIGIAMSSS 659 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723 T ++L++A+ AMY AK E F V + + ++ L A+E + L Sbjct: 660 EYATGEDILRDADNAMYRAKGNNLTSYELFNVEMRQTVQEIFELETSLRQALEEQQFILH 719 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI+ +++G EAL++W HP IS +F+ +AEE +I ++ ++ E + Sbjct: 720 YQPIVSTNSLQLLGFEALVRWVHPDKDLISPRKFIPLAEETGLIIPLSEWIFEEACGQMA 779 Query: 784 SWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W + + I +NIA+ + ++ ++KT +KL +ES+++ N + Sbjct: 780 QWCAHFPIANSLKISVNIAAYHFQSPQFLATIEQTLAKTKLLGKNLKLELTESLLIKNTD 839 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST----EKRIAI 898 R LL +L+K GI ++LDDFGT S L+YL P +T+K + S + G + ++I Sbjct: 840 RVLSLLPQLQKQGIEISLDDFGTGYSSLNYLKRFPINTLKIDKSFVDGLDYDSNQADVSI 899 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 +++II +A+++ ++A+ + + K+L ++ C+ IQ + PL + + Sbjct: 900 IKAIIYIAQSLGMNVVAEGVETDFQRKQLQKLQCEAIQGYLIFPPLTSQEATNFINSQLS 959 Query: 959 LVKN 962 ++ N Sbjct: 960 VISN 963 >gi|89900768|ref|YP_523239.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89345505|gb|ABD69708.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhodoferax ferrireducens T118] Length = 1353 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 122/576 (21%), Positives = 243/576 (42%), Gaps = 12/576 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 G I+ + + + + + + D + I G + Sbjct: 758 GLAAIRTAFRDISERKLAHDKLQLAANVFSHAREGIAITDARATIIDVNEAFCRITGYSR 817 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G L D+ + + +G E R + + + ++ I + Sbjct: 818 DEVLGQNPRVLGS-GRQDKAFYAAMWHDL--GEQGHWYGEIWNRRKNGELYPEMLTISAV 874 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G + Y+ + +DI+ K + A D LT +PNR DRL + + Sbjct: 875 RTDQGQVQNYVALFSDISAIKAHQHELEHIAHFDALTNLPNRVLLADRLQQAMAQAQRRG 934 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + + +D+D +K IND G GD +L+++ R+ + L+ D LAR+ G+ F +L+ Sbjct: 935 QM-LALAYLDLDGFKAINDRHGHEAGDLLLMTVATRMKQTLREGDTLARIGGDEFVAVLL 993 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAM 681 ++S A + + A P+ L + + V+AS+G + ++ + ++L+ A+ AM Sbjct: 994 DLSDSKASAPMLSRLLAAAAEPVRLGDLALQVSASLGVTFYPQVDEMEADQLLRQADQAM 1053 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F + RS R + + A++ E L Y P + + ++G E Sbjct: 1054 YQAKLAGKNRYHFFDAAQDRSARGHHESLERIRQALDRREFVLYYQPKVNMRTGAVIGAE 1113 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HP+ G ++ + F+ + E+ + I +++ W+ P I +N Sbjct: 1114 ALIRWQHPEKGLLAPALFLPVIEDHPLAVDIGEWVIATALIQNELWQADGLDMP--ISVN 1171 Query: 800 IASKDLLDNELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 + ++ L + ++ L++ P ++++ E+ + + + R++G+ Sbjct: 1172 VGARQLQQADFVPRLRELLAAQPGVKPFQLEIEVLETSALEDWVGVSQSIEECREMGVLF 1231 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 LDDFGT S L+YL + D +K + S + +AIL+ +I +A +IA+ Sbjct: 1232 ALDDFGTGYSSLTYLKRLQVDLLKIDQSFVRDMLDDPDDMAILQGVIGLAGAFRRNVIAE 1291 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + L ++GCD Q +A P+ + Sbjct: 1292 GVETIAHGTLLLQLGCDLGQGFGIARPMPADLFPAW 1327 Score = 73.8 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 59/176 (33%), Gaps = 3/176 (1%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGIFSDGERQS 408 W + +A ++ + + + I H++ + + Sbjct: 310 WMLRRQLAPLLATAETLVALPTAQTFPIALPVAHPDEIGHLIDGFNHLLAHLHQRETLLK 369 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 + S ++ D +A + G ++ G +++ +H +R+ + + Sbjct: 370 QILDTSSAAIFVIDSQGRITQANQRMAEMFGCPLDTLIGH--DYVSLVHPAERNVGQQNM 427 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + + E AD W + R +++ ++G+ DITE+ + Sbjct: 428 LALLANKVSSSDLERLYWRADESEFWGHLACRGFHDASTHQHCFVGVITDITERIQ 483 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 16/185 (8%), Positives = 46/185 (24%), Gaps = 6/185 (3%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 + + + + + + V+ ++ + ER Sbjct: 605 ILSSLGQVLGTFASYHHTTHTPTSAEIASVERFARIAAIVIEGQAAAKKMRDSEERFRTL 664 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + S + + P + G + + G L IH + + Sbjct: 665 IEESPAAILVH-RELRIIYLNPAAIAMFGARTAQELVGK--ALLDLIHPDSHQVATARVR 721 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + D + ++ + + DI+E+K + + + Sbjct: 722 HITNTGHAAPLIDEKYLRLDGTPIDVEVQSTSIIYEG--LAAIRTAFRDISERKLAHDKL 779 Query: 530 LCNAF 534 A Sbjct: 780 QLAAN 784 >gi|15889504|ref|NP_355185.1| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|15157378|gb|AAK87970.1| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 795 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 145/654 (22%), Positives = 269/654 (41%), Gaps = 24/654 (3%) Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 S + +I + I+ + G V+ + + T+RL + Sbjct: 140 LSRTELAFITIFILAVLTIVLAAIVGNRFMVIRPLMRL-------AAAIEATRRLGSRHH 192 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 + + F +Q L I + ER++ + +++ D Sbjct: 193 VDWRSKDEIGR-LAKSFNEMQTQLEKEEL--EIKNAHERKTEIYNRTPAMLFSLDRHDRI 249 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + G + G N+ IH +DR F+ + R Sbjct: 250 AAVSDYWVQATGYDRTRILG--LNFADLIHPDDRSLFQQRKTAHPSPDASHNGITVRFHC 307 Query: 488 ADNQFHWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 D +I +P+ + + + + D+TE +S + A D+LTG+ NRQ Sbjct: 308 MDGGVMDALILEKPLDSGDTTQQSTCLCVMTDVTELSQSEKRNRQQAISDHLTGLFNRQG 367 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F L + + + + + ID+D++K IND LG A GD VL T ++ LL Sbjct: 368 FEAILDLQIRDADRNGS-ELACLFIDLDRFKAINDNLGHAAGDAVLKQFTLKLEPLLTPL 426 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 D +RL G+ F I+L + + +F + + MP + I ++ASIG A + Sbjct: 427 DSASRLGGDEFAILLAGDKVEERALEFCERVCAMLDMPFEIENNSIRLSASIGMAVYPLH 486 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724 ++SE+L+NA++AMY K G N + F + + ++ D+ A+ + Sbjct: 487 ASSASELLQNADMAMYSRKRTGKNGSQVFDSSIMDRAREHAELERDIAQALSEDWFEAYF 546 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI L + G EAL++ +HP G +S + + +AEE I+ I +L++ ++ Sbjct: 547 QPIQDLATGQTAGFEALLRLNHPDKGLLSPAAIVSLAEENGTIQRIGNLILDQSIANLAR 606 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 M ++ +N + L + ++ + P+R+ + +E+V+M + + Sbjct: 607 LSRLPGMDQTYVAVNFSPLQFE-PGLPTRIAGVLHRHGILPARLVIEITEAVIMKDDPQI 665 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-------GSTEKRIA 897 R +L + ++G + LDDFGT S LSYL P D VK + S ++ Sbjct: 666 RAILNAIHQLGCRIALDDFGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVDIRQRSRM 725 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 ++ I ++ + T+IA+ + E LT MG D+ Q + A P ++ Sbjct: 726 LVEGIAAISHKMNCTVIAEGVETEEQKDLLTDMGADFGQGYYFARPQPVQRLIA 779 >gi|254253797|ref|ZP_04947114.1| hypothetical protein BDAG_03076 [Burkholderia dolosa AUO158] gi|124898442|gb|EAY70285.1| hypothetical protein BDAG_03076 [Burkholderia dolosa AUO158] Length = 731 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 134/569 (23%), Positives = 246/569 (43%), Gaps = 14/569 (2%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--W 452 + + E L V + + V + P +L + G + G + Sbjct: 164 RIASQLARSEEHHRLVVNSLNEGILVVSRDGIVVASNPSANRMLRVT-GELVGRRLSTVI 222 Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDI 509 L +H + + L Y AD W+ P+ Sbjct: 223 LRKLHEDGTPIRPDEWPSRRALATAAPLLGYTVGFGLADGDVIWVRGNAVPIVKPGETQA 282 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPTV 568 + NDI +++ + + A +D LTG+ NR+ DR+ + D + R + Sbjct: 283 ESVLVSFNDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFDGRGSAGGPARVAI 342 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + ID+ +KK+ND G GD +L S+ R+ L R+ G+ F I++ ++ Sbjct: 343 LFIDLVGFKKVNDTAGHDAGDALLRSVASRLAACAGGHA-LTRVGGDEFVILVDDCDDPE 401 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 +A A + +I P + E + SIG + + +++NA+ AMY AK RG Sbjct: 402 SLAVLAREVIDAIGKPFAIANNEYWLGVSIGISIAPRDGEDAVTLMRNADSAMYDAKQRG 461 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 +H F + I++ L A+ + L L Y P++ VG EAL++W Sbjct: 462 RHHFTFFTAQLNLRLQRRFAIEQSLRRALSSDMLRLAYQPVVDARSGRTVGAEALLRWTS 521 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G +S +EF+ +AE+ +I AI ++LE R + WR P + + +N++ + Sbjct: 522 PELGPLSPAEFIPVAEDTGLIVAIGQWVLETACRQVAEWRR-TIAPDLMLAVNLSPRQFH 580 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L E ++ +++T PS ++L +E V+M + +L L + + +++DDFGT Sbjct: 581 D-GLVESVRRCLAQTRLDPSALELEITEGVLMNDTATVLPMLEALTAMNVRISVDDFGTG 639 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L+YL P +K + S ++G +AI ++++ MA ++ + A+ + Sbjct: 640 YSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVETLAQS 699 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953 L ++GCD Q PL ++ L Sbjct: 700 SFLQQIGCDMQQGYLFGEPLEPADYVRRL 728 >gi|163781895|ref|ZP_02176895.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883115|gb|EDP76619.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein [Hydrogenivirga sp. 128-5-R1-1] Length = 570 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 144/552 (26%), Positives = 252/552 (45%), Gaps = 15/552 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 + + V D I GL ++G + L + +F + D Sbjct: 24 ILKHVSEGVLIVDKEGIIRGANEAFFKITGLGREGVYGKSLSELDF-KWEGYPSFNEVRD 82 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + G + E + + N YI I D T+++ + Sbjct: 83 ILLSE--GVWRGEVWGVSRGGSPFTAETTLVKADEEN-----YIAIFLDSTDKRSLEASL 135 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A+ D LTG+PNR D L+ L + ++N + V+ DID +K IND LG VGD Sbjct: 136 RSLAYYDALTGLPNRALLYDHLSQFLFQAK-NENKKLAVVFFDIDNFKLINDTLGHEVGD 194 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L + R+ ++AR + F ++L S + + S+ P + Sbjct: 195 SLLKAFAHRLTSHFPPNTMVARFGSDEFVVVLESIAGIDDVEEVVSGFINSVTTPFFIEG 254 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707 ++I VT + G + + +L+NA++AM+HAK G + + F S+R + Sbjct: 255 QKIYVTVTAGISLYPIDGGDPQTLLRNADIAMHHAKELGKSSFKFFTNELNLKVSERFTL 314 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + +L A+E E L Y P L IVG+EALI+W HP G I FM +AEE +I Sbjct: 315 QAELRDALEREEFVLYYQPQFELRTNTIVGVEALIRWHHPDRGVILPGRFMHVAEETDLI 374 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 + ++L R D + P+ + +NI++K + + + E ++ +++ T + P+ Sbjct: 375 VPLGYWVLRRACEDGRRLVENGF--PLKVAVNISAKQISEEDFLEKLRDILNATGFDPNL 432 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 +++ +ESV+M N +++ +L L+K+GIS+ +DDFGT S L+YL Y P D +K + S Sbjct: 433 LEVEITESVLMKNKQQAARVLRELKKMGISIAIDDFGTSYSSLNYLKYFPVDKLKIDRSF 492 Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + S +AI +II +A N+ A+ + E + L CD Q + + P+ Sbjct: 493 IGDVISDPNDVAIATTIIAIAHNLGLKATAEGVETEEQLIFLKLWQCDEAQGFYFSPPIT 552 Query: 946 FNSILKLLKERF 957 +S + +L+ Sbjct: 553 LDSFIDMLRNEN 564 >gi|227111556|ref|ZP_03825212.1| putative signaling protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 722 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 135/583 (23%), Positives = 249/583 (42%), Gaps = 21/583 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ L + R S D + + +L Sbjct: 152 ASLVMDKLEMRRLELARKASQVRFENIANTSPDTILCVNEKGVITFWNTAAEHMLEYTDE 211 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIR 500 + G + I + F L+ V R + E V+A + + + Sbjct: 212 EIIGRS---INTIVPD---AFVVQLNHLVTDRDSLMKGVTLELNVQAKSGSMVPVELSVS 265 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + D + Y I DITE++++ E + A D LTG+ NR L T L Sbjct: 266 --MWEDNDNVSYGAILRDITERRRNEERLFLLAHLDPLTGLANRTLLTSNLETALK---- 319 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + +M++D+D +K +ND LG + GD++LV + ++I ++ D++AR+ G+ F ++ Sbjct: 320 -NEPAVCIMMVDLDGFKDVNDSLGHSSGDNILVHVAKKIKATVRSGDVVARMGGDEFALL 378 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 ++ A + I+ + + + +I ++ASIG + +T ++L +A+LA Sbjct: 379 FPGLSDKKVAGKIAEQIIHEISQAMVIDDHQINISASIGAVLYPEYGLTVQDLLTSADLA 438 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N F + L A E E + Y P ++L EIVG Sbjct: 439 LYQAKSEGRNCYRFFTRELLEVFQAKHAFQLEFVRAYEQHEFEMFYQPQVKLATNEIVGA 498 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP+ G +S + F+ E + + +++E R W QA+ I I Sbjct: 499 EALLRWRHPERGLLSPAAFLTALENGPWAERVGDWIVETACRQAAEW-SQASDRYFRISI 557 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+ S L + + ++++T PS ++L +E++++ E L LR+ GI + Sbjct: 558 NLFSAQFRTGMLAQKIMDILARTGLQPSSLELEITENIILRYDESMLQPLNTLREAGIGI 617 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 DD+GT + LS L P +K + + + + AI+R+I+ + K+ +IA+ Sbjct: 618 AFDDYGTGYASLSMLKNYPVTRLKIDQTFVRTMCESPPDAAIVRAILYLGKSFGLGVIAE 677 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + + L GC+ Q P+ +LLK P+ Sbjct: 678 GVETLEQSERLRGKGCEEAQGYLFGHPMPAEEFTQLLKLNKPI 720 >gi|315125589|ref|YP_004067592.1| sensory box protein [Pseudoalteromonas sp. SM9913] gi|315014102|gb|ADT67440.1| sensory box protein [Pseudoalteromonas sp. SM9913] Length = 1008 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 146/559 (26%), Positives = 250/559 (44%), Gaps = 10/559 (1%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 SL S + + D P + + L +D Sbjct: 447 QESLHLASLVYNNSSEGMAITDENGVIYDVNPAFCETTLYSRKEVLNQTIGILSS-GKHD 505 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + + S + GR Q E R + + + + I + + N I I D+T Sbjct: 506 KQFYNYMWQSL--NKTGRWQGEITNRRKNGELYVEWLTIDTIYDKNKAPTSRIAIFTDLT 563 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ E I A D+LT +PNR +RL T+ + + +M++DID +K IN Sbjct: 564 EKKQADELIWRQAHFDHLTDLPNRLELKERLNLRFANL-TNADQKLVIMLLDIDHFKDIN 622 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG GD +L ++ RI + K D +AR+ G+ F ++ + S I A ++ S Sbjct: 623 DTLGHHYGDRLLKLVSERIVQTAKEADFVARIGGDEFVVVFSDLHGSDNIKQMAKSLLLS 682 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +A I + + ++ ++ASIG A ++LK A+ AMY AK+ G N E F Sbjct: 683 LASTIFIEDEKVYISASIGIACAPDDGQNPEQLLKAADQAMYKAKNSGRNGFEFFSHDMR 742 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + R+ + ++L A+E + L Y PI+ L D + E LI+W HP+ G IS ++F+ Sbjct: 743 EDANARMQLLKELRSAIELEQFELYYQPIVSLNDLHVHKAEGLIRWQHPEKGLISPADFI 802 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQAL 817 +AEE I A+ F+ + + + I IN++ L + + + Sbjct: 803 PLAEETRQINALGQFVFAEALQTLNDIKKHIQDE-FQISINVSPVQLATVDSGIDEWYDM 861 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++ S I +E +++ E ++ L L K G+ L LDDFGT S L+YL + Sbjct: 862 LATANIPASAIVAEITEGLMVNPEELTQSRLKALVKSGMQLALDDFGTGYSSLAYLQEMD 921 Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + A+ +II MA + +IA+ I ++ + L GCDY Sbjct: 922 TDYLKIDKRFVDNIQKGSQELALCEAIIMMAHQLGLKVIAEGIETKLQMDLLLEAGCDYG 981 Query: 936 QDSHVASPLGFNSILKLLK 954 Q + PL S ++L+ Sbjct: 982 QGYLFSKPLHKASFMQLIT 1000 >gi|121595818|ref|YP_987714.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] gi|120607898|gb|ABM43638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax sp. JS42] Length = 607 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 132/558 (23%), Positives = 252/558 (45%), Gaps = 14/558 (2%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDR 461 ER A+ + D + D + + TI G + + G + L H Sbjct: 47 LERA--AMDAAPDGIVLADRQGRILMVNAPMETISGYTNAQLCGQSIDLLVPAHARPE-H 103 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 R + + ++ D + I + S+ G + + D+++ Sbjct: 104 GQHMQRYHQSPSRRPMGMGRDLWLQRRDGSQVPVDIALGHSSSHGGTV---VAFVRDVSD 160 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 ++ + A D LTG+ NR +F RL + A + ++++D+D +K IND Sbjct: 161 LRRLEARMHYQATHDTLTGLLNRWTFGQRLEQAIAEQAGAQSPPFALLLLDLDDFKAIND 220 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G A GD VL + RR+ L DILARL G+ F ++L + + A + +++ Sbjct: 221 GYGHAAGDQVLQEVARRLRGALGTGDILARLGGDEFTVLLPGVACAAQAEGVAARLMQAL 280 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 +P + E+ AS+G A ++ +L+ A++AMYHAKHRG + + S R Sbjct: 281 CVPCRVQGFELNFGASMGIALCPQDAGDAATLLRYADMAMYHAKHRGRANFAFYAPSMGR 340 Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + + L LA+ L L Y P + + +VG+EAL++W P+ G +S F+ Sbjct: 341 KMAEKIQLHDRLKLALAYGGLTLHYQPQVEVATNRMVGVEALLRWHDPQLGEVSPERFVP 400 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AE +I + +++ R I +W Q + + +N++++ L +L E + + Sbjct: 401 VAEATGLILELGAWVMAAACRQIAAWERQG--MRLRVAVNLSAQQLRQTDLVEQVARNLR 458 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 P ++L +ES + +PE++ +L LR +G+++ LDDFGT S L+YL +P Sbjct: 459 THHVPPELLELEVTESEALADPEQACQVLNELRALGVAVALDDFGTGHSSLAYLKRLPVS 518 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + M ++ ++R+++ +A + ++ + + ++ L M C Q Sbjct: 519 HIKVDREFMRNVPASGGDTTLVRAVVALAHTMGLRVVVEGVATREQLQFLREMQCACYQG 578 Query: 938 SHVASPLGFNSILKLLKE 955 A L + + L Sbjct: 579 WLFAKALAPDDVALLYAA 596 >gi|148258048|ref|YP_001242633.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146410221|gb|ABQ38727.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 902 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 136/575 (23%), Positives = 258/575 (44%), Gaps = 21/575 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILGL 440 + SQ + S + L V ++ + + IL Sbjct: 319 FLIALFDDATERRSLSQELESTKKFLELIVDNIPVSLIVESAGDGRYLLANRSAEIILNR 378 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G + + D +RG L E + D ++ R Sbjct: 379 KREDATG--LTTADIFNPRE-ARLIMARDEAAIKKRGVLTEEHPISTKDGLRLFLTRRAT 435 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + G+ I D+T+++++ + A+ D LT +PNR +FL L+ +++ + Sbjct: 436 -VLGDGGEPQYLIKTYEDVTDRRQTESRMAHMAYHDGLTDLPNRAAFLQALSQMIE-ACA 493 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D V+ +D+ K +NDV G A+GD +L+ + RR+ + ++ARLSG+ FG+I Sbjct: 494 DTGEEFAVLNVDLKGLKDVNDVFGHAIGDKLLIEVARRV-HTVARGGVVARLSGDEFGLI 552 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + A + +IA+ + + I + G + + + + +L NA A Sbjct: 553 IDG-KQPETGRALAEQLAAAIAVEFQIEGKSIRTALTTGISVFPHNGPDPASLLANAGAA 611 Query: 681 MYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR----LMDEE 734 ++ AK RG + DR ++ ++L +A++N EL L + P + E Sbjct: 612 LFRAKARSRGSITFYEPEMDQQIRDRRVLHQELSVAIKNGELSLYFQPQASSGRTVDCSE 671 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I+G EAL +W HP G + S+F+ +AEE MI + ++L R+ SW P+ Sbjct: 672 IIGFEALARWHHPVRGFVPPSDFIPLAEESGMIVEMGEWILREACREAASWPK-----PL 726 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ + +L + +++ +T SP R++L +E V++ + +R LL RL+ + Sbjct: 727 QVAVNLSPAQFVHGDLVALVHSILLETGLSPGRLELEITEGVLIEDFDRGVALLRRLKAL 786 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ +++DDFG+ S LSYL PFD +K + + + + AI+R++I + + + Sbjct: 787 GVRVSMDDFGSGYSSLSYLQAFPFDKIKIDRAFVMNLGRNPQSAAIIRAVIGLGHGMNMS 846 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I+A+ + + L GCD +Q + PL + Sbjct: 847 IVAEGVETPEQLGFLAEQGCDSVQGYLLGKPLPID 881 Score = 39.9 bits (92), Expect = 2.4, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 34/138 (24%), Gaps = 4/138 (2%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNW 452 + S + V V +I + ++ + G Sbjct: 204 RRLEDELASTKQFLESVVDQVPACVVAKNIEDGRYIFANRAFERFARVSRDRIIGKRPG- 262 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 N + + + E V+ D + + N + Sbjct: 263 -DLFGEETAANITQADRAAMLAPGTTYRSELVVQRGD-EKRILESHRVVARNDKNEPQFL 320 Query: 513 IGIANDITEQKKSLEGIL 530 I + +D TE++ + + Sbjct: 321 IALFDDATERRSLSQELE 338 >gi|117925092|ref|YP_865709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117608848|gb|ABK44303.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 714 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 141/547 (25%), Positives = 269/547 (49%), Gaps = 12/547 (2%) Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + + V D I G + G + H + L + Sbjct: 162 DNTQEGVLLLDDQGTVQAVNNAYTIISGYHWEELLGKS---VCLCHGGLCEESNAELQTI 218 Query: 472 VGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + R G + +++ + +F+ IR+ + + NG Y+ + D++ Q S++G Sbjct: 219 LSHTRCDGSWEVQWQNSRRNGEFYLEQIRVTMIEDLNGTPQSYVVVVRDLSYQDSSIKGA 278 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 + +D LTG+PNR F DRL +L + + V+++ +D ++KIND LG +GD Sbjct: 279 RTASHEDALTGLPNRSLFADRLEQVLTHAKRSGE-KVAVILLGLDGFRKINDSLGHQIGD 337 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L + +R L+ D +AR+ + FG I ++ I ++++++ PI + + Sbjct: 338 QILTIMAQRFQTNLRGGDTVARMGSDEFGFIARDLISTQSILSVLGKIKRTLSAPIKIAD 397 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMI 707 E+ TA IG + + + +++ A+ A+ AK GGN F + ++ R+ + Sbjct: 398 SELVFTAGIGISVTPDDSLETDTLIRYADAALGRAKAGGGNIFTFFTQTMEQNASKRLHL 457 Query: 708 KEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 + L A+E EL L Y I D +I G EAL++W P+ IS +F+ IAEE + Sbjct: 458 EGRLRKAIEQEELTLFYQAKISCEDSPKISGFEALVRWITPEGDIISPGDFIPIAEETGL 517 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + ++++R RDI + PP+ + N++ + + + L + +Q + + P Sbjct: 518 IIPLGSWVIDRTCRDIAHLQA-LGFPPVVVSANLSPRQFVQDGLLQVVQQALVQHGIDPC 576 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +ES VMG+ +++ LL L +G+ + LDDFGT S L+YL PF T+K + + Sbjct: 577 WLELEITESSVMGSVDQATELLKSLVALGVHIALDDFGTGYSSLAYLKRFPFHTLKVDRA 636 Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + AIL++I+ +A+N+E ++A+ + E +T+ GC IQ + + PL Sbjct: 637 FVQTVEKDRADQAILQAIVSLARNLELQVVAEGVENEGQRDFITQAGCHSIQGFYYSKPL 696 Query: 945 GFNSILK 951 + +++ Sbjct: 697 PLSEVME 703 >gi|320352269|ref|YP_004193608.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfobulbus propionicus DSM 2032] gi|320120771|gb|ADW16317.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfobulbus propionicus DSM 2032] Length = 723 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 145/559 (25%), Positives = 255/559 (45%), Gaps = 16/559 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNF 464 + A+ + + D G A + G + I Sbjct: 34 LAQALDRTTAGIIITDADGVVQYANQRQCEQSGYALDEILGHNTSLFQSGNTPIE----V 89 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 L + + R Q + R + + +W I PM + G L Y + ++ + Sbjct: 90 YQHLWTTIKGGRE-WQGKLLNRRKNGELYWEFNYISPMLDDRGQPLGYFALKREVLHGQD 148 Query: 525 SLEGILCNAF-QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT---VMVIDIDKYKKIN 580 ++ G D LTG+ NR +F DR+ + T V +DID++ N Sbjct: 149 TVSGEDGLPRSIDPLTGLLNRPTFHDRVDQAIRRRLEGSGATNTTLIVAYLDIDRFHTFN 208 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 +V+G + D ++V + RIG+ ++ DILARL G+ F ++ + + + Sbjct: 209 EVIGHTLADSLMVEVANRIGQAVRRDDILARLGGDEFAVLFEHARDEASYTTLINRILQQ 268 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698 I P+ + E+ VTASIG A + + +L NA AM AK GG++ F+ Sbjct: 269 IRQPVVTPQCELVVTASIGIACYPRDGDDTVSLLNNARTAMRLAKQEGGDNYCFFQPLNK 328 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 D++ + L AVE +EL L Y P I L+ EIVG+EAL++W+ P G + F+ Sbjct: 329 PVTIDQLDMASQLRFAVERNELVLHYQPQISLISGEIVGVEALVRWNRPNSGMVPPGVFI 388 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAEE +I I ++L++ I++W+ + PP+ + +N+A+ + L + L+ Sbjct: 389 PIAEETGLIVGIGEWVLQQAIAQILAWQREGL-PPVKVAVNLAANHFHNPLLPGLIDRLL 447 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 ++ P ++L +ES +M N R + ++ +L+ G+ L+LDDFGT S L+YL P Sbjct: 448 DESGIEPHLLELELTESTMMRNVVRVKQIVDQLKIRGVCLSLDDFGTGHSSLAYLSQFPI 507 Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S +T + +I+ + + M + +IA+ + E + L R+ CD +Q Sbjct: 508 DLLKIDRSFVTDVTTNPTNASIVAATVAMTHKLGKNVIAEGVETEAQLAFLRRLHCDQMQ 567 Query: 937 DSHVASPLGFNSILKLLKE 955 + P I +L+E Sbjct: 568 GFLFSRPRPAEEIGVMLRE 586 >gi|120554257|ref|YP_958608.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] gi|120324106|gb|ABM18421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] Length = 575 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 124/549 (22%), Positives = 243/549 (44%), Gaps = 15/549 (2%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 +D R + + G + G L I R+ +++ + Sbjct: 36 YDRNRRVIYWNEASTRLYGYSRNEAQGKRLEDL-IIPKAMREAVIEAHTNWLDHNISIPA 94 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--EQKKSLEGILCNAFQDNL 538 E ++ D + + G+ + DI+ EQ ++ ++ A D+L Sbjct: 95 EELALKHKDGHLVPVYSSHVMIKQDTGECEMF---CIDISLEEQTQTKAELVRRASFDDL 151 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+PNR+ L + L + + V+ +D+D +K IND LG GD +L S+ Sbjct: 152 TGLPNRRLMESELESRLAEADRCNR-EVAVIFMDLDNFKLINDTLGHYQGDSLLKSVADT 210 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + + L+ D+L R G+ F ++L + I + + K++ + L V+AS Sbjct: 211 LKQELRHSDLLCRFGGDEFVLLLFDFHGPEGIHELLQRLVKALESKVQLHGDCYQVSASF 270 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVE 716 G + + + T++E++ NA+ AMY AK G N V + ++ I L A+ Sbjct: 271 GVSLYPHNGGTAAELMGNADAAMYRAKEIGKNTVCFYTSDINDRLVKYQQITALLRQALT 330 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 N L L Y P I L EAL++ +S + F+ +AE+ +I I ++++ Sbjct: 331 NGGLELYYQPQIDLRTGGATSCEALLRCFDKASNLVSPATFIPVAEKSGLINRIGDWVID 390 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 + + +W+ + I +N++ + L + L + + I P ++ + +E+ Sbjct: 391 AACKQLKAWQRTELA-GVRIDVNLSGRQLTNPHLADQILETIEHYGLKPEQLGVELTENE 449 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEK 894 V G+ E L RL+ G+ +++DDFGT S L YL +P ++K + S + E Sbjct: 450 VFGSEEDQTRQLERLKAAGLHISIDDFGTGYSSLVYLRKLPVCSIKIDRSFLHYAMENES 509 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +AI+++++ + +++ +I+ + + E K + +GCD+ Q A P+ + +K Sbjct: 510 DMAIMKAMVTVGQSLGLSILVEGVETEQQAKLIRDLGCDFAQGFLYAKPMPAKAAEAFMK 569 Query: 955 ERFPLVKNT 963 PL + Sbjct: 570 ---PLASRS 575 >gi|94263456|ref|ZP_01287269.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93456186|gb|EAT06325.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 730 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 136/607 (22%), Positives = 245/607 (40%), Gaps = 44/607 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQS-------LAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 ++ V Q I ER + GD V +T Sbjct: 124 IAALERVREKKQLRQNIREGEERLQRSEGFLHSVLESLGDAVVVIGRDLRIITANRGYRQ 183 Query: 437 ILGLASGSMHGPIRNWLPYIH------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 G + G + + + D ++ + R + R + Sbjct: 184 QSGRGEEEIIGQHCYRISHGYSRPCWLEEDC--VCAVIQAIKEGRPANSIHIHR--DKEG 239 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-------CNAFQDNLTGIPN 543 ++ P+ + NG I + DITE K+ + AF D LT +PN Sbjct: 240 VPLYVETNAYPLRDQNGHIYAAVETIRDITEIKELEQEKRAKEAEIERLAFYDFLTDLPN 299 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R+ DRL S V+ +D+D +K +ND G GD +L RR+ + + Sbjct: 300 RRLLQDRLEQAFAASERSGQY-GAVIFLDLDNFKNVNDTRGHRTGDLILQMTARRLRDTV 358 Query: 604 KFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPINL---------LE 649 + D +ARL G+ F I+L + E ++ A +R ++A P L Sbjct: 359 REDDTVARLGGDEFVILLSNLATQSETAISRVGRVAEKIRLALARPFQLTKPQQGSSLES 418 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMI 707 E + AS+G A + + ++ E+ K A+ AMY AK G N F + + + Sbjct: 419 GEFHLGASLGIALFRGHENSAEELFKYADTAMYRAKEAGRNTARFFDPAMQTALEENESL 478 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + DL AV + L Y P + ++G EAL++W H G +S F+ ++EE +I Sbjct: 479 ERDLRRAVVQEQFELYYQPQVDAA-GRLLGAEALLRWYHSARGPVSPLSFIPLSEENGLI 537 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I ++L+ R + +W + + IN++++ + +Q +I+ P + Sbjct: 538 LPIGRWVLQEACRQLATWSQSFPVGDFRLAINVSARQFHQPGFVDEVQEIIAAARVEPRQ 597 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 IKL +E++V+ + + + + +L+ G+ +DDFGT S L+ L +P + +K + + Sbjct: 598 IKLELTETLVLTDLDDTIKKMRQLQAAGLGFAMDDFGTGYSSLAKLKQLPLEQLKIDRAF 657 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI +II M + + I+A+ + ++ L GC Q + PL Sbjct: 658 VRDLETDPHDAAIAATIIAMGRTLGFEIVAEGVESAEQLQILQSQGCGIFQGYYFTPPLP 717 Query: 946 FNSILKL 952 +L Sbjct: 718 AAKFERL 724 >gi|260223173|emb|CBA33470.1| hypothetical protein Csp_B19220 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 842 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 133/570 (23%), Positives = 250/570 (43%), Gaps = 35/570 (6%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT-----------ILGLASGSMHGP 448 + R S D W+ D I +G+++ Sbjct: 285 LQESEARFRALTELSSDWYWEQDAEYRFTRFHGAIQAGRNKTGQHSIGKTRWENGALNMT 344 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 W + + R+ + E R + + + W+ P+ +S+G Sbjct: 345 EAAW-------------AAHRAVLDARQEFRELELRDKDEEGRVFWISTSGAPIFDSHGV 391 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 Y GI +ITE+K++ E I AF D LT +PNR+ +D L + A L + Sbjct: 392 FKGYRGIGRNITERKEAEEKIERLAFYDVLTDLPNRRLLMDHLQYAVASCAR-GRLHGAL 450 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS- 627 + ID+D +K +ND G VGD +L + +R+ ++ D +AR G+ F ++L + + Sbjct: 451 LFIDLDNFKDLNDTRGHDVGDGLLRVVAQRLKACVRESDTVARFGGDEFVVLLQDLDGTL 510 Query: 628 ----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ A + + + +P L T SIG + + E+LK A+LAMY Sbjct: 511 ADAGVQAELVARKILQQLNIPYELPGGSHHSTPSIGVVLIHGLRQSVDELLKQADLAMYE 570 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + F + +R ++ DL ++ EL L P++ D +VG EAL Sbjct: 571 AKSAGRNTLRFFDPAMQSMVAERTELESDLRAGLQRGELMLYSQPVVD-ADRRVVGAEAL 629 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP G +S +F+ +AE+ +I + ++L+ + +W + + + +N++ Sbjct: 630 LRWRHPVRGMVSPMQFVPLAEQTGLIIPLGEWVLQTACAQLAAWAHSPDSAHLTLAVNVS 689 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ E +Q I + P +KL +ES+++ + + + + + LR +G+ LD Sbjct: 690 ARQFRSPEFVVQVQNAIQQNGADPKLLKLELTESLLLTDSQEAIMKMTALRSLGVRFALD 749 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL +P +K + S + + AI +++ + +++ ++A+ + Sbjct: 750 DFGTGYSSLSYLKMLPLQQLKIDQSFVRDVLTDVNDAAIASTVLALGRSLGFDVVAEGVE 809 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 E + L GC + Q P+ Sbjct: 810 TEGQRQFLLNQGCVFFQGYLFGRPVPVAEF 839 Score = 75.0 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 3/118 (2%) Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + + I G+ N IH +D +++ EFR Sbjct: 183 GRFLFVSDACTAIFGVTPEEARAAPENVFRLIHPDDIVQTLKSMNAA-AVDGMTWAQEFR 241 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNLTGI 541 + D + + ++G Y G DITE K SL A LT + Sbjct: 242 IIGKDGHVRTLFGKAITYRETDGKYNAY-GSVTDITEHKASLAILQESEARFRALTEL 298 Score = 47.6 bits (112), Expect = 0.010, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 17/143 (11%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIAT-ILGLA 441 V + A + + E + +G + V P + + L Sbjct: 17 AVAESEQALQDANDELRGQLELFEETESLAQAGHWIV---PQGQTV---PRWSRGLFRLT 70 Query: 442 SGSMHGPIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + IH D++ + + R EFR D W+ R+ Sbjct: 71 QTPWTEKLTLEKSRVGIHPEDKEVYLAA-REAMDGRL----LEFRWIRRDGDVRWVRSRM 125 Query: 500 RPMSNSNGDILRYIGIANDITEQ 522 + + + G+ D TE+ Sbjct: 126 HRYHRQDDSYVDF-GVVQDFTEE 147 >gi|77359917|ref|YP_339492.1| hypothetical protein PSHAa0971 [Pseudoalteromonas haloplanktis TAC125] gi|76874828|emb|CAI86049.1| conserved protein of unknown function; putative membrane protein [Pseudoalteromonas haloplanktis TAC125] Length = 751 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 143/561 (25%), Positives = 261/561 (46%), Gaps = 17/561 (3%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + ER +L V D + +D V P T+ G N Sbjct: 182 QLKLTEERLNLFAKCVESLTDALAIYDKNFKLVDINPSFLTLFGGVREQYLKKDFNL--- 238 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 ++ + V R LQ E ++R + + + I I + N I Y+ + Sbjct: 239 --PGYDKSYINTIKKTVYQR-DSLQQEVKLRNSAHVLLPIEISIDEIRNDQNQITNYVVV 295 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D+TE+KK+ + + +D T +PNR F L + N ++V D+D Sbjct: 296 YSDLTERKKAESQLHNLSNRDRTTNLPNRNLFFTDLQKL-----GQLNSHHALLVFDLDN 350 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +KKIND LG +GD +L L R+ +L + D+ RL G+ F +++ N+ I A Sbjct: 351 FKKINDSLGHQLGDSLLAKLAMRLNKLTRENDVFYRLGGDEFALVMSDTNDIYTITRTAK 410 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VES 694 +IA P + E+ +T+S+G + T +LKNA+ AMYHAK +G ++ + Sbjct: 411 QFLAAIATPFKMAGHELAITSSVGIVLFPEDGNTPELLLKNADTAMYHAKKKGNSYLFFN 470 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ R+ I+ + ++ + + Y P + + ++VG+EAL+++ PK G IS Sbjct: 471 DTMNREAVKRLQIENLMRFGLKENHFAVYYQPKMNIHTGKLVGMEALVRFITPKKGIISP 530 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAEE I I +L + RD+ W D + +N+++K +L + Sbjct: 531 GVFIPIAEETGQIIEIGEVVLNKACRDVKEWLDAGLFNG-RVAVNLSAKQFSLPDLTTRI 589 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ K ++L +E VM +P+ + ++ L GI L +DDFGT S L+YL Sbjct: 590 DVILQKNALPSYFLELEITEGTVMDDPKDAIAIMCSLSARGIHLAMDDFGTGYSSLAYLK 649 Query: 875 YIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P +T+K + + + E+ ++ SI+ +A N++ ++A+ + I+ L ++ C+ Sbjct: 650 QFPLNTLKVDKAFIDDMKNERGRNMVDSIVTIAHNLDLHVVAEGVEQASQIEILKQLNCE 709 Query: 934 YIQDSHVASPLGFNSILKLLK 954 +Q + + PL + + LK Sbjct: 710 TVQGYYYSKPLSKDEFTEFLK 730 Score = 92.7 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 12/189 (6%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 ++ + I++L+ ++ + + +R V GSGD Sbjct: 21 LYALEATFNLNLNTVAVTASAIIVLVLCYMLTVIYKLKRSRYQLMLSEQRLKSTVEGSGD 80 Query: 417 IVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 +WDW+I +V L + IH +D +L + Sbjct: 81 TLWDWNIKTGKVLRINDKY-----LMDSILSTEFPPHKSLIHPSDITQVEYLLKKHFAQQ 135 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA- 533 + +R++ + W++ R + + ++N LR G DI++ K + E + A Sbjct: 136 TPFFEATYRIKDHFGGWLWVLDRGKIIEKDTNLSPLRMTGTVRDISQLKLTEERLNLFAK 195 Query: 534 ----FQDNL 538 D L Sbjct: 196 CVESLTDAL 204 >gi|88797137|ref|ZP_01112727.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Reinekea sp. MED297] gi|88780006|gb|EAR11191.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Reinekea sp. MED297] Length = 838 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 139/546 (25%), Positives = 261/546 (47%), Gaps = 14/546 (2%) Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 S D V+ D + T I G G + G I + + Sbjct: 289 NNSADGVFVLDQHQQFRTCNRVFCDIFGRQKGELLGLP--LFQVIRTDQTQRISQSM--- 343 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 GR + + + M + + + + + Y+GI D +E +++ + + Sbjct: 344 --ISNGRWSGDLFSQRRGGERFPMTMTLTTIRREDNSVSHYLGICRDQSESQRTEKELRY 401 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 D LTG+ NR F + + + V VI++D++K +N+ LG+ VGD + Sbjct: 402 LNNYDKLTGLYNRGYFHEIVGQFREHEPLLTE-HYAVCVINLDRFKSVNESLGLEVGDQL 460 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 L L R+ L + +ARLS + F +I+ E + + ++ I P + E E Sbjct: 461 LKDLAARLNNLQEPIRQVARLSSDEFAMIIEFEQDRDMLLSMLEHLQAEITRPFLVGEHE 520 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKE 709 + VTASIG T +T ++L +A AM A+++GGN+ + + + R+ +++ Sbjct: 521 LIVTASIGVCVVTEGNLT--QLLNHAIAAMNQARYQGGNNYQFYHQRLATTPLERLQLEK 578 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L AV N+E + Y P + L I +EAL++W HP G + +F+ +AEE +I A Sbjct: 579 ALRKAVINNEFSVDYQPKMNLHTGIIDSVEALVRWRHPHKGVLDPDDFIPLAEETGLISA 638 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 I +L + ++ +WR Q I I +N++S + N+L + + + + ++ Sbjct: 639 IGEQVLNKACQEAAAWR-QRGFGDISISVNLSSHQIRRNDLYDIIYNALQNSQLPAEYLE 697 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES++M + ++ L +LR +G+ L LDDFGT S LSYL +P DT+K + S + Sbjct: 698 LELTESMLMEDISHAQDFLNQLRSLGVRLALDDFGTGYSSLSYLKRLPIDTLKIDRSFVA 757 Query: 890 GSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + + + I+ +++ M++++ ++A+ + + L +GCDY Q ++ PL + Sbjct: 758 EARQGETSPIVEAVMAMSESLRLNVVAEGVETREQLHYLESLGCDYAQGYIISRPLPASE 817 Query: 949 ILKLLK 954 +L L++ Sbjct: 818 VLTLIR 823 Score = 85.4 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 83/259 (32%), Gaps = 23/259 (8%) Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL- 340 G SG C+ + + S R+ + I + + AVL Sbjct: 19 WGLTARSGGLCLTLAIAEAGIAGTFLYSHGRLVASVTAAISLIPIPFLFI--NNSAVLFQ 76 Query: 341 --IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS- 397 +P LI + + + N++ L L + + Q + Sbjct: 77 VHLPLMALISLGSFSGFRMALRNTRNELESQRLTQLLTDNQAQLQDKIKQRTSEIEQANK 136 Query: 398 -------------QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 Q + E+ +LA+ SG WDWDI +V + G + Sbjct: 137 RLNFEVELRKEVNQALIQSEEQLNLAMTASGIGFWDWDIPHRKVYHSDP-ERFFG-EQSA 194 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRP-M 502 + + + Y+ D R L + + Q ++V + Q W+ + Sbjct: 195 VDSETFSLVDYVAEPDVPQVRRALAKHLRGQSEYYQMRYQVFLPETAQPRWIEDIGKVTE 254 Query: 503 SNSNGDILRYIGIANDITE 521 ++ G +R IG D+T+ Sbjct: 255 RDARGRPIRMIGTRRDVTK 273 >gi|217970096|ref|YP_002355330.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] gi|217507423|gb|ACK54434.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera sp. MZ1T] Length = 1050 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 135/561 (24%), Positives = 248/561 (44%), Gaps = 18/561 (3%) Query: 402 SDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + ER LA S + + D+ V P I G + G L Sbjct: 478 ENEERLRLAASVFSSSYEAILITDVDNRIVDVNPAFCRITGYSREESLGRDPGMLAS-GR 536 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 R+ +R + + + Q E R D ++ I + ++ G ++ ++ + +D Sbjct: 537 QGREFYRAMWQAIEEH--DHWQGELWNRRKDGSEFAEVLSISRVRDARGRVIHHLAMFSD 594 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+ KK E + A+ D LTG PNR+ DRL + S V VID+D +K Sbjct: 595 ISRLKKHEEELNRIAYFDPLTGAPNRRLLDDRLRQAIAHSRRTGK-PLAVCVIDLDGFKP 653 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG GD VL+ + R+G +L+ D +ARL G+ F ++L + + Sbjct: 654 VNDQLGHEAGDQVLIGIVDRLGAILRASDTVARLGGDEFVLLLEDIEGERVLE----RVL 709 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++I PI L +++ V+ASIG + +L++A+ AMY AK RG N ++ F S Sbjct: 710 EAIRTPIALASQQVCVSASIGVTLFPEDDADPDTLLRHADQAMYRAKQRGRNCIQFFDAS 769 Query: 699 SFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 RV + L A+ E L + P + ++D +G+EAL++W HP+ G ++ E Sbjct: 770 VEEQQRVRKERLERLDQALRRQEFVLHFQPQVDMVDGRPLGMEALLRWQHPERGLLAPGE 829 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ E + + ++++ + R + +N+ L+ +++ Sbjct: 830 FLPDLEGTELETRLGQWVVDHALGALERCRAAGLDIG--VSVNVGPGPLMQAGFVASVRS 887 Query: 817 LISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + + P R++L ES + + + +L ++G+ + LDDFGT + L + Sbjct: 888 ALERHPDIPPERLELEILESTALDDMVLAMDVLEACHRLGVRIALDDFGTGYASLRHFRQ 947 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +PFD +K + S + + AI+ +++ +A+ +IA+ + L +GC Sbjct: 948 LPFDRLKIDRSFVLDMLEDGEARAIVGAVVQLARTFGREVIAEGVETPAHAAALLALGCR 1007 Query: 934 YIQDSHVASPLGFNSILKLLK 954 Q +A P+ I + Sbjct: 1008 LGQGFGIARPMPVEHIPGWVS 1028 Score = 101 bits (253), Expect = 5e-19, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 2/169 (1%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 + + L++ + + Q A + I D + + W+W++ Sbjct: 319 LATLAIVLLLVRLAQRNLALSQANAAARRLAAEIELDRHHLRNVIEATQAGSWEWNLETG 378 Query: 427 RVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 A +LGLA+ G R W +H D LD + +++ R+ Sbjct: 379 EWKMDARWAAMLGLAAEDCDGEGRACWRKRVHPADLAEAERELDRHIRGETAFYEHDLRL 438 Query: 486 RAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 R D ++ W+ R + +++G L G DI +K++ E + A Sbjct: 439 RHCDGRWIWVYDRALAVRRDADGRALLLTGAQIDIDRRKENEERLRLAA 487 >gi|332703411|ref|ZP_08423499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] gi|332553560|gb|EGJ50604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio africanus str. Walvis Bay] Length = 1040 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 132/581 (22%), Positives = 262/581 (45%), Gaps = 14/581 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V Q + + SG + + GL Sbjct: 450 LETFLDVTEHERTKQALAESELLYRTIFMNSGAASLLLNEQGLGSMANEGFFELTGLGPE 509 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ + +W + N + L VG L E + A + H + + + + Sbjct: 510 AVQAGL-HWEDLFPAEEVANIQA-LAGTVGTSGKALCLEATLAHASGKPHSVYLTLARVP 567 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 S+ R + D+TEQ++ + A+ D LTG+PNR F RL + + + Sbjct: 568 GSD----RGVLSMVDLTEQRRYQHELYNKAYFDQLTGLPNRTMFSMRLEAAIVRARREGG 623 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +M++D+D +K +ND +G GD++L +R+ + ++ D++ARL G+ F +++ Sbjct: 624 G-LAIMLLDLDDFKNVNDTMGHLAGDEMLRKAGKRVNQAVRKDDLVARLGGDEFVVLVER 682 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + A + ++ A P +L +REI + S+G A + + +LKNA+LAMY Sbjct: 683 PHDENLLQRMAARLVRAFAEPFHLGDREIFASTSVGVARFPQDGNDAEAVLKNADLAMYE 742 Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK+ G + F +V ++ +L ++ L Y PI+ + IVG+EAL Sbjct: 743 AKNSGKHAYRLFSGEMNARLLRKVNLEAELRKSIGQRRFVLRYQPIVDVASRSIVGMEAL 802 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W + S+FM AEE ++ ++ LE R+ + W + P+ + +N++ Sbjct: 803 LRWIDESGRVVPPSQFMPEAEECGLVVQMDRLALEIACRETLRWTN-GGEVPLKLSVNLS 861 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS-RLLLGRLRKIGISLTL 860 ++ + + +++ T + SR+ L +E+ ++ + + + +L L G+S++L Sbjct: 862 AQHFALGGVESMVTEVLAATGFPASRLGLEITETALIKDLKSATAPVLQALSVKGVSISL 921 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TEKRIAILRSIIPMAKNIETTIIAKD 917 DDFGT S L+YL ++P +K + ++ ++R +I +A+++ ++A+ Sbjct: 922 DDFGTGYSSLAYLKHLPISVLKIDRLFVSDIGTPGSDGSVLVRGMISLAESLGLAVVAEG 981 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + E + L GC Q A PL + + LL + P Sbjct: 982 VETEEQLAFLRNQGCALAQGFLFAPPLTAQAFMDLLSQGLP 1022 >gi|256830394|ref|YP_003159122.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum DSM 4028] gi|256579570|gb|ACU90706.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfomicrobium baculatum DSM 4028] Length = 1030 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 144/584 (24%), Positives = 266/584 (45%), Gaps = 14/584 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +L F I+ + T + ER L +G + + + Sbjct: 455 EYLLETFWDIREIERTRRL---LEESEERYRAIFLNTGTPGILINEDTSIDVANTEFLHL 511 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G+ M +W + H +D R YE R+ + + H + Sbjct: 512 AGVTQDDMRQSP-SWTRFFHTDDVQRMLRYHAQRRQDEAIAPRTYEARLMDSSGELHHVK 570 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + + + + I DIT+ K + + A+ D LTG+PNR S ++RL + Sbjct: 571 LTVAMIP----RTQQSIAFLLDITDIKNAEWKLHELAYTDALTGLPNRLSAMERLDRTV- 625 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + + + V ++D+D +K IND G AVGD VL+ +R+ +LK +++ RL G+ Sbjct: 626 QALSPETGSLAVFLLDLDDFKVINDSWGHAVGDVVLMEAGQRLVSILKTSELVGRLGGDE 685 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+ + N+ + A A + ++ P + E ++ S+G A + T+ ++++ Sbjct: 686 FIIVSDANNSKDEYAQLAQKLIDVLSAPFQFGDSETYLSVSVGVAIFPEDGNTAGQLIRC 745 Query: 677 AELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LAMY AK G N R+ I+ +L LA+++ E+ + P+I L ++ Sbjct: 746 ADLAMYQAKSLGKNIYRFHSPELTLKAQRRMEIERELRLALDSGEIVAFFQPVIDLETQK 805 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 IVG EAL +W IS +F+ +AE+ +I I+ +L + W + + Sbjct: 806 IVGAEALARWCKRDGTLISPVDFIPVAEQTSLITDIDFSVLSQACHQARGWDEAGLGR-L 864 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I NI+++ L ++ ++ + PS++ L +E+V M N E+ R +L + + Sbjct: 865 RISCNISARHFQRGNLPGEVKRVLEASKLPPSQLTLEVTETVYMENIEQVRSILESIDAM 924 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTI 913 G+S LDDFGT S LSY+ + FD +K + S + E+ A++R+++ +A ++E Sbjct: 925 GVSSALDDFGTGYSSLSYVRSLSFDVLKIDKSFVKNLPEESSLALIRAMLGIAISLEIIP 984 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +A+ I L +GC Q + P+ +LLK++ Sbjct: 985 LAEGIETREQFLLLKSLGCKLGQGYLFSPPVPAAQFQELLKKQN 1028 >gi|146282332|ref|YP_001172485.1| sensory box protein [Pseudomonas stutzeri A1501] gi|145570537|gb|ABP79643.1| sensory box protein/GGDEF domain protein [Pseudomonas stutzeri A1501] Length = 886 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 136/576 (23%), Positives = 269/576 (46%), Gaps = 21/576 (3%) Query: 393 TGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + + + ++ ER+ ++A S + D + + I G ++ G Sbjct: 309 SRDITDRVNTELERRIAAIAFE-SQQGMLITDAQNRILRVNGAFSRISGYSAAEAIGQTT 367 Query: 451 NWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L H + + + +++ G + E R + + I + N +G+ Sbjct: 368 ALLASGRHGPDFYRSMWSSIEA-----TGVWEGEIWNRRKSGEIFPEWLTISAVRNVHGE 422 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + Y+ DIT++K + E I AF D LTG+PNR+ LDRL + +S + L + Sbjct: 423 VTHYVAAFTDITDRKAAEERIHNLAFYDPLTGLPNRRLLLDRLHQAMAVSRRSNQL-GAL 481 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-- 626 M ID+D +K IND+ G GD VL R+ ++ D++ARL G+ F ++L + + Sbjct: 482 MFIDLDNFKNINDLHGHQTGDQVLRVAAERLHAEVRASDMVARLGGDEFVVMLENLGDDP 541 Query: 627 ---SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + + + S+ L E + +ASIG + +S E++K A+++MY Sbjct: 542 LRAAAQAEHIGMKLLNSLDRSYRLNELGLYSSASIGVVLFGGEACSSDELMKRADMSMYE 601 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + F +R+ ++ + ++N E L + P + ++G EAL Sbjct: 602 AKISGKNALRFFDPRMQLAVQERLRLEAGIRQGLKNGEFVLSFQPQLEQNAG-VIGAEAL 660 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G +S + F+ AE +I A++L +L++ + W + + +N++ Sbjct: 661 VRWQHPQRGLLSPAAFIAQAEHAGLIHALDLQVLQQACGQLARWAATPAFADLTLSVNLS 720 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L + E + L+ ++ +P+R+KL +E++++ N + + RL++ GI ++D Sbjct: 721 AHLLYQDHFVEKLLDLLERSGANPARLKLELTETLLLDNMPEAIARMTRLKQHGIRFSID 780 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919 DFGT S +SYL +P D +K + + + + + I+R+I +A + +IA+ + Sbjct: 781 DFGTGYSSMSYLQQLPLDELKIDQTFIRRLPDDASSLTIVRAICALASGLGLEVIAEGVE 840 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GC Q P+ + +++ Sbjct: 841 SGAQRSVLLGNGCHRFQGYLFGKPMPAMELEEMVSA 876 Score = 55.3 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 37/319 (11%), Positives = 90/319 (28%), Gaps = 28/319 (8%) Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIF----LFMYLHWNRWHAKVGYITFSGIACI 293 L+ L R+ A + + F +F L+ + + + + + Sbjct: 13 LLALCWLLAFTTRSWNRSGQRSAKLLAGLWFGSACIFGMLNTSIGQTGIILDARTAVLSM 72 Query: 294 AILF--CMSFYYPMVTASIARITLASIVLY------YTYFIIYHGMKGYERAVLLIPAWI 345 A LF + V A R+ + + + + R L+ A+ Sbjct: 73 AGLFGGPLVAGIAGVLAGGFRLWMGGPGVVPGLANVLLPIALGLAYRCASRRRLIGIAFW 132 Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF-----------TVIQHVLATG 394 + + + L + + + ++ L V + L ++ +L Sbjct: 133 QLLGFGVLLHLGVLGLIA-LLLPSPLGAEAVREIALPTLLILPLATATLGVLLNDLLERD 191 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q + R D++ D + ++L + G + Sbjct: 192 RIEQALRFSEARLRAITQAIPDLLLVLDEDGRYLEILCAERSLLYDEPSKLLGRRLH--D 249 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + + F + + +L E+ + R P+ G + Sbjct: 250 VMPEAEERRFLGFIQQTLNSDSPQL-IEYSLPTL-GGPKVFEGRALPLEQPPGQKRAVVW 307 Query: 515 IANDITEQKKSLEGILCNA 533 ++ DIT++ + A Sbjct: 308 LSRDITDRVNTELERRIAA 326 >gi|186684306|ref|YP_001867502.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor [Nostoc punctiforme PCC 73102] gi|186466758|gb|ACC82559.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor [Nostoc punctiforme PCC 73102] Length = 878 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 118/444 (26%), Positives = 236/444 (53%), Gaps = 6/444 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++++ E I A D LTG+PNR F + L+ L + + V+ +D+D++K IN Sbjct: 437 QRQQVEEKIRYQALHDMLTGLPNRLLFNELLSKTLPNATRNSE-SLAVIFLDLDRFKVIN 495 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L ++ +R+ +LL+ D +AR G+ F I+L + ++ A + ++ Sbjct: 496 DTLGHTLGDQLLKNVAQRLQDLLRGGDTIARWGGDEFTILLPRVTDIEEVTQVAYRILQT 555 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P L E+ VTAS+G A ++ + ++++A+ A+Y+AK +G N+ + + VS Sbjct: 556 LEDPFYLQGHELYVTASLGIALLDNNSPDAETLIQHADAALYYAKDKGRNNYQFYSVSLS 615 Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + +++ L A+E E + Y P + + EI G+EAL++W HP+ G ++ S F+ Sbjct: 616 AKNPELLTLEKSLRYALEREEFTVFYQPRVNIGTGEITGMEALLRWQHPEMGLVAPSVFI 675 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I AI ++L +W+D PPI + +N++ K +L E + ++ Sbjct: 676 PLAEESGLIIAIGEWVLRTACMQNKTWQDSGL-PPITMAVNLSLKQFRQPKLVEIITRVL 734 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T ++L E+ + + +R +L L+++G+++++DDFGT S LS L +P Sbjct: 735 EQTGLDAHFLELEIMETTAIEDLGFTRTVLEELKQMGVNISIDDFGTGHSSLSRLQLLPL 794 Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + S M I+++I+ + ++ + A+ + ++ L + C+ +Q Sbjct: 795 HNLKIDQSFMRDLQPDSKVAHIIQAIVTLGHSLGLKLTAEGVETAEQLEFLKSINCEEVQ 854 Query: 937 DSHVASPLGFNSILKLLKERFPLV 960 PL ++L+ + P++ Sbjct: 855 GYFFYRPLPEQKATEILESKRPII 878 >gi|256258771|ref|ZP_05464307.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 9 str. C68] gi|260885095|ref|ZP_05896709.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str. C68] gi|297247604|ref|ZP_06931322.1| PAS domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|260874623|gb|EEX81692.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str. C68] gi|297174773|gb|EFH34120.1| PAS domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 703 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 138/588 (23%), Positives = 242/588 (41%), Gaps = 18/588 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432 +V ++Q ++ V V+ D+ V Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +T G G I I V RR L E +V D Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHGRMVMRRREVLSVERKVEHKDGTS 228 Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 M I + G + IG+ DITE+++ + ++ A D+LTG+PNR F + Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 ++L D + +DID +K +ND + GD +L + R+ ++ +AR Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 L G+ F I+ S +IA FA + + P L VT S+G A Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 +++NA+LA+Y +K G ++ S + + DL A+ + L Y PI Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L I G EA I+W+HP+ G I EF+ +AEE +I I ++L+ R+ W + Sbjct: 466 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ + L + + + +P R++L +E+V + N + + LL Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 LR++G+ + +DDFGT S LSYL PFD +K + S ++G + +AI++++ + Sbjct: 581 DLRRLGVRIAMDDFGTCYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 A+ + ++ L +Q P+ + ++ Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688 >gi|297584694|ref|YP_003700474.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens MLS10] gi|297143151|gb|ADH99908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus selenitireducens MLS10] Length = 695 Score = 486 bits (1251), Expect = e-134, Method: Composition-based stats. Identities = 150/583 (25%), Positives = 260/583 (44%), Gaps = 16/583 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I V +++ Q + +R + +++ D ++ P ILG Sbjct: 105 ITHIIAVTRNITTIENQRQALLRSNQRYQSLFDYNKSGIFELDKNGRFISLNPSGTMILG 164 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + M ++ + + D + + Q + A+ + + Sbjct: 165 MDEKEMMQN--SFHSIVCMEDLPQVSEMFQRSLDGETVDYQTA--IIDANGDRKRLDVTH 220 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 PM + +++ GIA DIT + + + I A QD LTG+PNR + +L L Sbjct: 221 VPMI-VDYEVVGVYGIARDITSEHRQKKQIEDLANQDQLTGMPNRSAMKRKLKEKLRSHQ 279 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 D V+V+D+D +K IND +G GD++++ L++R+ + + R+ G+ F + Sbjct: 280 KDG--YVAVLVLDVDDFKLINDSVGHDQGDELILELSKRLDQAFSKRFDIGRIGGDEFMM 337 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT--SSEMLKNA 677 I + + D + + + P ++ R + +S G +++K A Sbjct: 338 IGHP-KSRGDLTDISGILDHLFSEPFHIENRNYYLKSSCGITVVNGHNHQRIPEDVMKQA 396 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEI 735 E+AMY +K RG + S + R M+ +++L L ++ L++ Y PI+ +I Sbjct: 397 EMAMYSSKKRGRGLTTFYDESMNEASRRMLFLEQELQLILQERGLFVHYQPILDARTGQI 456 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 EAL++W H + G IS SEF+ +AEE +I + F+L+ + WR I Sbjct: 457 KSFEALVRWHHRQEGAISPSEFIPVAEESGLIHQVGEFVLDESLSMLTKWRKA-GHQDIR 515 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 I INI+ K L D L +Q + P I+L +E+VVM N ++ R L L+ G Sbjct: 516 ISINISVKQLEDRSLLTMIQQKLDHYGLLPHDIELEITETVVMENIDKVRHTLDLLQDKG 575 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913 I L++DDFGT S +S L +PF T+K + S +T K AILRS+I +A + T Sbjct: 576 IYLSIDDFGTGYSSMSSLNRLPFHTIKIDRSFITDVMYVSKSRAILRSMIQLASEMGMTT 635 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKE 955 IA+ + + L G +Q + P+ K LK Sbjct: 636 IAEGVETKEQFDILRTEGVSEVQGFYFTKPVTACEAEEKWLKN 678 >gi|298490106|ref|YP_003720283.1| diguanylate cyclase/phosphodiesterase ['Nostoc azollae' 0708] gi|298232024|gb|ADI63160.1| diguanylate cyclase/phosphodiesterase ['Nostoc azollae' 0708] Length = 637 Score = 486 bits (1251), Expect = e-134, Method: Composition-based stats. Identities = 122/555 (21%), Positives = 246/555 (44%), Gaps = 12/555 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNFRTI 467 + + D + D + V + + + + + I D Sbjct: 79 TLESATDAILIVDSLDKIVGFNKKFLEMWDIPALMITSGNYKQALRTAIKKLDNPRHYLS 138 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + E + D + + + N + + I DIT +K + Sbjct: 139 ILRELDENPDIHIGEN-ILFKDGRIFNPFYQQQYKYKKN---IGQVWIFRDITAEKLASN 194 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I + D LT +PNR + L L + + + V +D+D++KKIND LG + Sbjct: 195 IINYESLHDILTNLPNRLLLKNLLIDALTKVSHNHS--LGVCFLDLDRFKKINDSLGHGI 252 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + + I + L+ DI+AR G+ F I+L + I + + + Sbjct: 253 GDKLLQMVAQCIKKSLRSDDIVARWGGDEFIILLPEISEMYNIDLIQERIFAAFKQGFKI 312 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705 + ++ SIG A + ++KNAE A+ K +G N+ + ++ ++S ++ Sbjct: 313 DNYHLNISPSIGIALYPQHGEDGETLIKNAEAALSFVKLQGRNNYKVYQAAINSQATELF 372 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 +++ L A+E E + Y P + EI +EAL++W HP+ G I + F+ IAEE Sbjct: 373 ILENSLYNALERQEFKVYYQPQVNSSTGEITKMEALLRWQHPELGLIPPATFIPIAEETG 432 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I I+ ++L+ +W+ N+ + + +N + + L ++ ++ +T + Sbjct: 433 LILPISEWVLKTACLQNKAWQQTLNLSSLSVAVNFSGRQFQQPNLVGIVEQVLCETKLAH 492 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 ++L +E+V M + E ++ +L +L ++G+++++DDFGT S LSYL +K + Sbjct: 493 RYLELEITETVAMQDVELTQKILRQLDEMGVTISIDDFGTGYSSLSYLKDFSIHALKIDQ 552 Query: 886 SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + K AI +II +A + +++A+ + + + L + C+ +Q + P Sbjct: 553 SFVQDLANKDHQTAITTAIISLAHGLNLSVVAEGVETQEQLNALRILQCEIMQGYFFSHP 612 Query: 944 LGFNSILKLLKERFP 958 L ++L P Sbjct: 613 LSAEEATRMLTAYQP 627 >gi|74317384|ref|YP_315124.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74056879|gb|AAZ97319.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Thiobacillus denitrificans ATCC 25259] Length = 738 Score = 486 bits (1251), Expect = e-134, Method: Composition-based stats. Identities = 138/687 (20%), Positives = 285/687 (41%), Gaps = 17/687 (2%) Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339 ++ + L + + ++ + + ++ A + Sbjct: 47 PLGWRLSLPTLRVETRLAVAMSHQSPILSTRPAPPRDAATACARSNYVEPTIRSIAGAFI 106 Query: 340 LIPAWILIFI-WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 L +++ + LW A + ++ Q V+ +L + S+ Sbjct: 107 LACGILVLIKPEWSVLWAATLCFVGFNLFQSGFTQFCVMEKLLKKLRFKSELDEIRTLSR 166 Query: 399 GIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATIL---GLASGSMHGPIRNWL 453 R + + ++V + + + +L G + G +L Sbjct: 167 SHAEAEARAAFYDTLGLLNEVVVELSREGELAFLSEHWTKLLAADGRRNADFLG--LAFL 224 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 ++ +DRD L + + + FR++ D HW+ + +G + Sbjct: 225 SFVKQHDRDTLEQRLSALLKGESDIVTLRFRMQREDRLEHWVEGKFARHH-KHGQVHGIR 283 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 G+ D+TE + I A D LTG+PNR R+ ++ S + ++ ID+ Sbjct: 284 GVLRDVTEAYMQEKRISHMAMHDALTGLPNRTYLDARINEAIEQS-RSSATKFALLFIDL 342 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K+IND+ G GD +LVS+ + L+ D+LAR G+ F ++L + Sbjct: 343 DNFKRINDLYGHKAGDQLLVSVGELLRASLRATDVLARWGGDEFVVLLPFPGEIDMVRRI 402 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + + + R+ VT SIG A + ++ +L A+ A+++AK +G N+++ Sbjct: 403 ASELLDGLRNDLEKQCRDTFVTVSIGVAIYPDDAESAETLLVQADKALFYAKSQGRNNIQ 462 Query: 694 SFRVSSFR---SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPKW 749 + R + + AV+ + L + Y P++ + V +EAL +W K+ Sbjct: 463 LYADLQTRAPGFEDAEMTARFVAAVKQNLLEVHYQPVMDAANPRCPVSVEALARWHDDKY 522 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G ++ ++F+ +AE + +I + +LE+ + + +N++ + L+ + Sbjct: 523 GWVNPADFIPLAENMGLIHEVGRQVLEQALDHFSK--RNNTCDALKLAVNVSKRQLMSPD 580 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + A + + P +IKL +ES+ + ER+R LL RL G +L+LDDFGT S Sbjct: 581 FYPTLLATVERFGVHPRQIKLEITESIALEGIERARALLQRLSDAGFTLSLDDFGTGFSS 640 Query: 870 LSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 LS++ +PFD +K + S + T + ++++I+ M + ++A+ + L Sbjct: 641 LSHVHELPFDEIKIDISFVRRIKTPEGRVLVKTIVDMGHAMRLALVAEGVEDSETAAILQ 700 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955 MG + +Q H + P+ + Sbjct: 701 GMGVEMLQGYHFSRPMPKEVCADFIAR 727 >gi|83592371|ref|YP_426123.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC 11170] gi|83575285|gb|ABC21836.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Rhodospirillum rubrum ATCC 11170] Length = 917 Score = 486 bits (1251), Expect = e-134, Method: Composition-based stats. Identities = 134/567 (23%), Positives = 244/567 (43%), Gaps = 11/567 (1%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + + A G + D+ + +P+ I GL G W I+ Sbjct: 341 RTLRESDNALAAACEVGGLSTFILDLSANLWMRSPEQEAIFGLD-GRHPRTRDAWHALIY 399 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIA 516 DR G ++R+ D W+ + + + R +G Sbjct: 400 PEDRGGVLDYFAERDALDTGEFDIQYRIIRPSDGAVRWIHGAGKLERAEDLSVRRLVGAI 459 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 D+TE K+ L+ A+ D+LT +PNR DR+ L L+ +L V +D+D + Sbjct: 460 KDVTEIKEDLDRTEFLAYHDSLTNLPNRLLLADRMGQALALAVRRQDL-LAVCYLDLDSF 518 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND G +VGD +L+ + RR+ + + D +ARL G+ F ++L ++ Sbjct: 519 KPINDTWGHSVGDALLIEVARRLQQNARAEDTVARLGGDEFVVLLCGFKAEAEVERVVRR 578 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESF 695 M SIA P ++ R++T+T S+G ++ + ++++A+ AMY AK +G N + F Sbjct: 579 MMDSIATPYSVGGRQVTLTVSMGITTFPRDAEQEADALIRHADQAMYEAKRQGRNRIHYF 638 Query: 696 RVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 R + + A+E +E L Y P I L+ G+EALI+W HP+ G + Sbjct: 639 DAEKDRLHKERQTYYNRMVAALEANEFQLHYQPTIDLVSGVFSGVEALIRWRHPERGLLL 698 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 F+ E+ + + ++L R W+D + + +N+ L + Sbjct: 699 PGAFLPDIEDTDLTVPLGEWILREALRQKERWQDMG--LSLTVGVNLFGYHLQQDSFVAR 756 Query: 814 MQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 A++++ P + L E+ M + + ++ G+ LDDFGT S L+Y Sbjct: 757 FAAILAEFPAVHPEEVTLEIVETTAMRDLAAISEKMWDCKRFGVDFALDDFGTGYSSLTY 816 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 +P +K + S +T + A+++SI+ M+ + ++A+ L R Sbjct: 817 FRRLPVTHLKIDRSFVTDILENAQDQAMVQSIVAMSHALGRKVVAEGAETLAHCAALGRY 876 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957 GCD+ Q +A P+ I ++ Sbjct: 877 GCDFAQGFGIARPMPGEDIFPWARQWN 903 >gi|320010638|gb|ADW05488.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces flavogriseus ATCC 33331] Length = 621 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 142/589 (24%), Positives = 269/589 (45%), Gaps = 33/589 (5%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 ++ A + + D+ VT + +LG S+ G L + + Sbjct: 33 LAELRDYRAAFGAAALPMAVVDLRGQIVTPNAALGGLLGADPASLTGRPAADLVGLSSD- 91 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + R RL+ R++ AD + W + + PM + G R + D++ Sbjct: 92 -GPTWRAYNEVLRGTRPRLRCTRRLKHADGRLLWAEVTVVPMGDPAGGAERVLLSVADVS 150 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL--------------DLSATDDNLRP 566 ++++ E + D +T +PNR F +RL L ++ R Sbjct: 151 DRRELRERLRHLRMHDPVTRLPNRTLFFERLAGALEAPAAAQAPDSPSAQDGSSAPPGRI 210 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL------KFPDILARLSGNRFGII 620 + +DID +K +ND LG GD +L ++ R+ + ++ARL G+ F I+ Sbjct: 211 GLCYLDIDGFKAVNDTLGHRTGDRLLAAVAGRLTDCAEADGHRTGGHLVARLGGDEFAIL 270 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + + + ++ + A A+ ++ P + ++V+ASIG +S+ +++ +++ A+ Sbjct: 271 VEDSSGTHQLTELARAVLAALQQPFEVAGHRLSVSASIGVVERSSADTSATALMQAADTT 330 Query: 681 MYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G F + L AVE E L Y P++ + D + G+ Sbjct: 331 LYWAKADGRARWTLFDPERNAHRMTRQALSSTLLPAVERGEFTLEYQPLVGMADGIVRGV 390 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFIL 797 EAL++W+HP++G ++ S F+ IAEE I + ++L W+ + P +FI Sbjct: 391 EALVRWNHPRFGLLAPSRFVPIAEEDGTIVQLGRWVLRSACLQARRWQLEHPEDPALFIS 450 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N+A + L D++L + ++++T P ++L +ES VMG+P R +L L +GI Sbjct: 451 VNVAVRQLWDSDLVADVAEILAETGLEPGLLQLELTESAVMGSPGRPLRVLQALSDMGIR 510 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPMAKNI 909 + +DDFGT S L+YL +P +K +GS + G S+ I+ +++ +A + Sbjct: 511 IAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFRYEDGAHSSPADETIVEAMVQLAHRL 570 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 T+ A+ + + L R+GCD Q + + I +L+ R P Sbjct: 571 GLTVTAECVETSGQAERLRRIGCDTGQGWLYSRAVAPERIAELIGARPP 619 >gi|257095254|ref|YP_003168895.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047778|gb|ACV36966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 640 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 138/587 (23%), Positives = 255/587 (43%), Gaps = 23/587 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + Q + ++ + + D P ILG + Sbjct: 20 VSRARKTAERRQADQALRRSEALKASILASLACGIVAADPQGVITACNPCAEAILGYRAD 79 Query: 444 SMHGPI-----RNWLPYIHINDR----------DNFRTILDSFVGYRRGRLQYEFRVRAA 488 + G + R+ NDR L + +R Sbjct: 80 ELIGKLTPVIFRDSGDPAGPNDRPSQPPHRTGDAGLDAQLARAGSGSTAGERDTTCLR-K 138 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 D Q + + PM + +G + Y+ DIT K++ +GI D LTG+ NR Sbjct: 139 DGQQIAVRLATIPMHDPDGLVSGYVHTLVDITRHKEAEDGIQRLVHADPLTGLANRILLD 198 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 R+ L + ++ +D+D++K +ND LG +GD++L+ + R+ +++ D Sbjct: 199 ARVRQDLSRAHRA-REPLALIFLDVDRFKNVNDTLGHRIGDELLIQVAARLDSIVRDEDT 257 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 L RL G+ F ++L + ++ A+ A + K A L + +T T S G A + + Sbjct: 258 LCRLGGDEFVLVLPN-TDADGAANVAEKLLKITAPSYRLEQHVLTCTVSAGIAMYPTDGD 316 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHP 726 + + + +A+ AMY AK RGGN F I+ +L A+ N EL+L Y P Sbjct: 317 SVASLSTSADAAMYRAKARGGNAYSFFTAEMQERLARTRQIRNELRRAIANGELHLQYQP 376 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + VG EAL++W H + G +S EF+ IAE + A+ ++L R + W+ Sbjct: 377 RFAMAARRPVGAEALLRWQHRQLGMVSPLEFVPIAEGSGLSLALGEWVLRTAIRHMRGWQ 436 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 +++ PP+ + +N+++ L E + ++ + P ++L +E++VM NP + Sbjct: 437 NRSL-PPMRVAVNLSAAQFRQTNLSERVARILDEEGLPPPFLELELTENLVMDNPLAAIA 495 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 + +LR +G+ ++LD+FGT S +S L + D +K + SL+TG AI+ + + Sbjct: 496 TVNKLRTLGVGVSLDNFGTGRSSMSDLRRLRVDRLKIDRSLVTGLPTDPDAAAIVAATLS 555 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 +A ++ +A + + L GCD Q + + P+ Sbjct: 556 LAHDLGLPTVAGGVESAAQMAFLRARGCDEAQGNLLGPPVVAEQFAA 602 >gi|322419612|ref|YP_004198835.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320125999|gb|ADW13559.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] Length = 538 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 118/437 (27%), Positives = 211/437 (48%), Gaps = 8/437 (1%) Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 +++ + A D LTG+PNR DRL+ + + + +M +D+D +K +ND LG Sbjct: 88 AIQQMWYMAEHDVLTGLPNRTLLADRLSQSIAFAQRHGK-KVALMYLDLDHFKHVNDSLG 146 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 +VGD +L S+ +R+ ++ D ++R G+ F ++L + + A + ++A P Sbjct: 147 HSVGDQLLQSVAKRLRASVRLSDTVSRQGGDEFVVLLNEIDEAQDAVLIAKKIIAAMAPP 206 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRS 702 + + ++ VT SIG + + +L+NA+ AMY K G NH ++ Sbjct: 207 HFVSDNQLHVTVSIGISIYPDDGRDVETLLRNADTAMYQTKKTGRNHCHLYQPEMNVQAV 266 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 R + + L LA+E L Y P + L I G EAL++ +S +F+ +AE Sbjct: 267 ARQSVVQALHLALEEGRFVLHYQPKVNLDTGAITGSEALVRVQESDDQMVSPEQFIAVAE 326 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I I ++L R +W I +N++S++ E + +++ T Sbjct: 327 ECGLILPIGRWVLHEACRQTQAWLQAGLDIG-QIAVNVSSREFHSKEFFNSVITILNATG 385 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 PS ++L +ES +M + E + +LL L+K+GI + +DDFGT S LSYL P DT+K Sbjct: 386 LDPSHLELEMTESGLMLDTEPTMVLLNALKKLGIQIAIDDFGTGYSSLSYLLRFPIDTLK 445 Query: 883 FNGSLMTGSTEK----RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 + S + AI+ ++I M +++ ++A+ I + L C Q Sbjct: 446 IDKSFVQDLVNDPGGSGEAIVSAVIGMGTSLKQRVVAEGIETREQLAFLQSHHCVEGQGY 505 Query: 939 HVASPLGFNSILKLLKE 955 + + P+ LLK+ Sbjct: 506 YFSRPVPAAEFAALLKK 522 >gi|54294439|ref|YP_126854.1| hypothetical protein lpl1508 [Legionella pneumophila str. Lens] gi|53754271|emb|CAH15748.1| hypothetical protein lpl1508 [Legionella pneumophila str. Lens] Length = 840 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 150/799 (18%), Positives = 322/799 (40%), Gaps = 49/799 (6%) Query: 193 GIIIGVASLLAIFLTIFYMVN----RSSMLIPTFAMAWVVLGY----ISIDFGFLSKLVN 244 ++ A + +SS+ + + LG+ + ++ G + Sbjct: 54 AVVYNTALCFIVLSLAILFSLNCYYKSSLTLSIIVFVFSGLGFSQHILGVNLGVDEFFFH 113 Query: 245 LPSGELLIW--RACSEIALSSSLIIFLFMYLHWN--RWHAKVGYITFSGIACIAILFCMS 300 + R + A +I + ++ R + + +S Sbjct: 114 HYHAFKNAYPGRMAANTAFCFLMISVALIMMNLKCYRSFNNSLAGALGFLVFCLAILFIS 173 Query: 301 FY-------------YPMVTASIARITLASIVLYYTYFIIYHGMKGYER-AVLLIPAWIL 346 Y PM + + S Y+ + A+ + ++ + Sbjct: 174 GYFSEIQHAYQWGDKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLFSFCI 233 Query: 347 IFIWFIGL--WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + + + RL+ V G + + L G + LA ++ Sbjct: 234 MLTFTLLSFEILEKENRLNLSFSIATFVIG-IFLSFLFGLVIRLWQLAKLSAIAAKYAFL 292 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 E + + D + D + + G+ I N+L ++ Sbjct: 293 E-VEATLESTADGILVVDKESKVINYNQRFLDM--WHQGTNPPRIINYLDIKEEINKQLV 349 Query: 465 RTI-----LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 ++ + + + +E +++ ++ + + I+ + DI Sbjct: 350 NKREVIHRINQTIKHPDHQNSFELKLK---GNLYYDCYTQPLKLDED--IIGRVWSFRDI 404 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T K+ + + D LT +PN+ +D L + + +D + V ++D+D++ +I Sbjct: 405 TIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLGYAMKGAISDKKI-VGVYLLDLDRFTQI 463 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 NDV G + GD+++ + +R+ + + IL R+SG++F I++ S + + + Sbjct: 464 NDVFGHSKGDEIIKIIAKRLKDCVPVEHILGRISGDQF-IVIASLDEIREAVFGVTRLLA 522 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P+ + I ++ SIG + + T +L A++A+ K G N+ + + Sbjct: 523 AFHEPVKMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKADIALSRTKIEGRNNFQFYTRDM 582 Query: 700 FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 ++++ +L A++ E L Y PI+ L I G EALI+W+HP+ G + +F Sbjct: 583 NTYTLEHILLENELRDAIKKREFVLYYQPILELRSLNISGFEALIRWNHPRNGLLLPEKF 642 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE+ +I I ++L + + I SW+ Q + + +NI+ K L L + + Sbjct: 643 IQLAEEIGIISEIGDWVLTTVCKQIKSWQKQGVN-NLKVAVNISPKHLKFRHLPIRINEI 701 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +S+ I+L +E++++ L L++IGI +++DDFGT S LSYL +P Sbjct: 702 LSEFQVKSESIELELTENILIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELP 761 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + A++++II MAKN+ +IA+ I + ++ L +GC Y Sbjct: 762 IDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIAEGIENKYQLEILQNLGCHYG 821 Query: 936 QDSHVASPLGFNSILKLLK 954 Q + P+ + L+ Sbjct: 822 QGYYFYHPMPPEKCTQFLQ 840 >gi|302541034|ref|ZP_07293376.1| sensory box/GGDEF family protein [Streptomyces hygroscopicus ATCC 53653] gi|302458652|gb|EFL21745.1| sensory box/GGDEF family protein [Streptomyces himastatinicus ATCC 53653] Length = 726 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 145/575 (25%), Positives = 259/575 (45%), Gaps = 14/575 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + A + + + + G+ V + + + +A + G S Sbjct: 150 AALTAREEAEKALHASEAKFQAVFEGAVIGVGIAGLDGEVLVVNDAMARMFG--GASFFR 207 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 P RN ++H +D + V R + E D W + + + +S+G Sbjct: 208 PGRNVTEFVHPDDAPGVHELYRELVTGERDLFRIEKPHYRDDGSVLWTNLTVTLLRDSHG 267 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + +A DITE + E + A D LTG+PNR FL+ L+A D R Sbjct: 268 APQYQLALAEDITEHRLLRERLRYEATHDELTGLPNRTLFLE--RLDQALAAAADAQRFG 325 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENN 626 V +D+D +K +ND LG GD +L ++ R+ + +++AR+ G+ F ++ Sbjct: 326 VCYLDLDGFKAVNDSLGHVAGDRMLRAVAERLQGCVASPHELVARVGGDEFLALVTGPAA 385 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A M ++A P+ + RE+ V ASIG + +I +E+L++A++ MY AK Sbjct: 386 QADGTAMARRMLAALADPVQVEGRELRVRASIGVVDGRAGEIGRAEVLRSADITMYRAKA 445 Query: 687 RGGNHVE--SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 GGN E ++ R + L A+EN E ++ Y P++RL D + G EAL++W Sbjct: 446 AGGNRYELADDDSNARVIARHSLSNGLPSALENGEFFIEYQPLVRLADGTVRGAEALVRW 505 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ--ANMPPIFILINIAS 802 HP G + +F+ +AE+ +I + ++LE+ AR +W+D + + +N++ Sbjct: 506 LHPVHGVLGPDQFIPLAEDTGLIVPLGRWVLEQAARQARAWQDAPEGEAERLRVNVNLSP 565 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L L A++ PS + L +E+ ++G E + L +L +G+ + LDD Sbjct: 566 CQLSHPTLVSDTVAVLENAGLCPSALCLEVTENDLIGADEDALRPLRQLADLGVDIALDD 625 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKD 917 FGT S LSYL +P T+K + S G + I+ I+ +A ++ + + Sbjct: 626 FGTGYSNLSYLRRLPVSTLKLDRSFTRGMQRAPADPVDVKIVEGIVSLAHTLDLAVTVEG 685 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + + + L +G D Q + A P + L Sbjct: 686 VETAVQAEHLRMLGFDTAQGWYYARPGPPERLHTL 720 >gi|300866894|ref|ZP_07111568.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506] gi|300335083|emb|CBN56730.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506] Length = 870 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 136/465 (29%), Positives = 234/465 (50%), Gaps = 28/465 (6%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +T + L NAF D+LTG+PNR F++R+ + V +D+D++K Sbjct: 402 VTSACVTAYKQLYNAFHDSLTGLPNRALFIERVARAAKNAKHRQYDFFAVFFLDLDRFKV 461 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG GD +L++L R+ ++ D++AR+ G F I++ + + A + Sbjct: 462 INDSLGHVAGDSLLIALVERLKCCVRISDLVARVGGGDFAILIENIKDVATATSVAERIH 521 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKIT--------SSEMLKNAELAMYHAK--HRG 688 +++ +P NL +EI +T SIG A S T +L++A AMY AK G Sbjct: 522 EALIIPFNLSGQEILMTVSIGIAVGGSQGETQTGEEDERPEHLLRDAHTAMYRAKALGMG 581 Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 V + + + +R+ ++ DL +AV+ E L Y P + L +I+G EALI+W HP Sbjct: 582 RYQVFNAAMHATAVERLQLETDLRMAVKRQEFLLHYQPFVHLATGKIIGFEALIRWQHPG 641 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLD 807 G +S +F+ +AEE +I I ++LE R + W+ Q PP+ + +N+++K Sbjct: 642 RGLVSPLKFIPVAEETGLILPIGQWVLEEAMRQLRLWQQQFQFDPPLTMSVNLSAKQFSQ 701 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 +L + ++ ++ +T P +KL +ESVVM E + +L +++ + + L +DDFGT Sbjct: 702 PDLVKQIKEILQRTGIEPECLKLEITESVVMDEVESAIAVLNQMKALNVKLGIDDFGTGY 761 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST-----------------EKRIAILRSIIPMAKNIE 910 S LSYL P DT+K + S + + AI+R+I+ +A + Sbjct: 762 SSLSYLSRFPTDTLKVDKSFVGRMEVGSEGMVEKIANPKSRGGENTAIVRTIVMLAHALG 821 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + + +L +GC+Y Q A PL + L+ Sbjct: 822 MDVIAEGVETAEQLAKLRSLGCEYGQGYFFARPLPSEAATALIAS 866 >gi|228911569|ref|ZP_04075358.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] gi|228848072|gb|EEM92937.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] Length = 834 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 165/766 (21%), Positives = 312/766 (40%), Gaps = 38/766 (4%) Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267 + L F + ++L + I F + N + + + Sbjct: 89 FLSLSIGDIFLSFVFPIIDLLLFLLGISLVFRLTIFN----AKNKLYIFIIVLIGLASTD 144 Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP----------MVTASIARITLAS 317 +L+ Y+ + + + +L ++ P ++ + L S Sbjct: 145 YLYFYVQ-DELSDRAVILLRCLYRVFLLLIAIAATIPKESFSKRNYFIINPVLGEKILVS 203 Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG--LWMAITKRLDNDIIQPALVGGL 375 +I K + LI + F++ + M + R L L Sbjct: 204 FPYLAVTILIGFTFKEQTHSSTLIMGNCITFVFVLIRHTIMQMQNRD--------LTKKL 255 Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 + + + Q S + E+ D + D + + Sbjct: 256 KVFNSQLEQKISQKTADLIKKSNDLLEKQEKFKSLYEYHPDPILTIDSNGIVLNINQAGS 315 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHW 494 +LG S + G + DR L R + RV+ + H+ Sbjct: 316 ILLGKKSVELIGKEC--ISIFLDEDRFGLEEALKQ--EGRCSSDSLQLRVKNNNVKDVHF 371 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + I P+ Y+ + DIT+ K+ + I AF D +T I NR F L Sbjct: 372 WSVTIVPIMIERQTFGSYV-MVKDITKMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRS 430 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + + + ++ ID++++K IND LG ++GD VL + +R L LAR+ G Sbjct: 431 TKRAQKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGG 489 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F II+ ++ ++ D + + P + + ++ SIG A + I ++ +L Sbjct: 490 DEFAIIVHNQT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLL 548 Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A++AMY AK +G N V + S + R+ +++DL A+EN+EL+L+Y P I Sbjct: 549 QHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNALENNELFLLYQPQIDSKA 608 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +++G EALI+W HP+ G IS EF+ IAEE I +I + L++ + Sbjct: 609 CKVIGAEALIRWQHPELGLISPFEFIPIAEETLQIISIGKWTLQKACHQLKECHSA-GFS 667 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + IN+++ + + + + + I + + I L +E + M + + + L L L+ Sbjct: 668 NLKMGINLSAIEFEQKDFVQTIISTIGEIGVPANSIDLELTERIAMVDEQETLLKLKALK 727 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910 GI L++DDFGT S L+YL P DT+K + + I+++II +A + Sbjct: 728 SYGIHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGNEIIQTIISLAHTLN 787 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +IA+ + + + L R C +IQ + + PL + + L + Sbjct: 788 MKVIAEGVETKEQLAVLQRNACYFIQGYYYSKPLNKDEFINFLNRK 833 >gi|313682319|ref|YP_004060057.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Sulfuricurvum kujiense DSM 16994] gi|313155179|gb|ADR33857.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfuricurvum kujiense DSM 16994] Length = 592 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 139/560 (24%), Positives = 252/560 (45%), Gaps = 14/560 (2%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I SL S D + D ++ P + G S + + N + +I Sbjct: 32 IPRSQNLHSLIYFHSNDCIVIADERGVILSVNPAFERLSGYDSSELVNVLPNKIDT-YIK 90 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + F L + + ++ + E + + ++ ++ I+ + +G +YI + +D Sbjct: 91 DGE-FYKALKNAIALKQ-SWEGEITYTDKEGKELYYKLLTIQRIIEEDGS-SKYIAVLSD 147 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +++ +++ + I D LT +PNR FL L L ++ R +M ID+D +K+ Sbjct: 148 MSKMEEANQKIWYETNFDALTDLPNRHMFLHHLEQQLSKIERNNFRRTALMYIDLDDFKE 207 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND+ G +GD +L +T RI ++ D+ R+ G+ F +IL N + A + Sbjct: 208 INDMYGHQIGDTLLKKVTTRIISCIRNTDLCFRIGGDEFTVILPDIENLYMVETIAQNIL 267 Query: 639 KSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 K ++ P L + + ++ASIG A S +LK A+ AMY +K G N F Sbjct: 268 KELSSPFELENSKNVFISASIGIAIAPDDAADSETILKYADQAMYQSKKSGKNTSNFFAQ 327 Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S R + +D+ +A + L Y PI + +I EALI+W HP I+ + Sbjct: 328 SMQDALIKRFQLIKDMHIACAEEQFVLYYQPIFEIKTGQIHKAEALIRWKHPDGYLINPA 387 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEG 813 +F+ IAEE MI I +++ + + WR I +NI+ + E Sbjct: 388 DFISIAEETGMILEIGEWIVHEAIKTVSQWRRMY-NERFQISVNISPVQFHQKNGSMPEW 446 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ +++ ++ + + +ESV++ + L L I ++LDDFGT S LSYL Sbjct: 447 IK-VLTSDAFAKDSVVVEITESVMLEDSAIVWERLKLLEDAKIEISLDDFGTGYSSLSYL 505 Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P+ +K + S + + + II +A + +IA+ + + L M Sbjct: 506 KNHPYQYLKIDQSFVKQLEINLSDQILCKMIIDIAHQLNMLVIAEGVETQYHRDILQEMK 565 Query: 932 CDYIQDSHVASPLGFNSILK 951 CDY+Q ++ PL + +K Sbjct: 566 CDYLQGYAISKPLPADEFVK 585 >gi|326943146|gb|AEA19042.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 675 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 144/562 (25%), Positives = 272/562 (48%), Gaps = 11/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R D V+ ++ + ++ + + + +I Sbjct: 118 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQHSNKACESLF--TAYYCEVASYSLVHFIDS 175 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + L R L E R + + ++++ I + P N +++ GIA D Sbjct: 176 KDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 232 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT + + + AF D LTG+PNR+ F L IL+ + T+ N V+ +D+D++KK Sbjct: 233 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKK 291 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L+ + +R+ L+ D++AR G+ F I+L + A + Sbjct: 292 INDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 351 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + E+++T SIG A + +E++KNA++AMY AK G N F Sbjct: 352 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 411 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +++ ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++ Sbjct: 412 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQ 471 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I + ++L + W +Q + + +N++ +L + Sbjct: 472 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLISTISK 530 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL Sbjct: 531 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 590 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + G + AI+ SII ++K + +IA+ + E + + L R CD+ Sbjct: 591 PINTLKIAREFICGITTSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 650 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ + LL ++ Sbjct: 651 IQGFFISKPVSSKDVWMLLHKK 672 >gi|254449440|ref|ZP_05062877.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Octadecabacter antarcticus 238] gi|198263846|gb|EDY88116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Octadecabacter antarcticus 238] Length = 529 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 139/513 (27%), Positives = 247/513 (48%), Gaps = 13/513 (2%) Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 RD+ +L + + +EF + + + +++ N++G+ + IG+ D+T Sbjct: 15 RDSVGKVLSDALNGK-ETANFEFPLFSKSGEQIDVLLNSTTRRNASGEAVGVIGVGQDVT 73 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 EQK++ + I A D LTG+PNR+ DRL + S L ++++DID++K++N Sbjct: 74 EQKRANDLIWKQAHYDILTGLPNRRMARDRLEETIKKSRRT-GLPFALLMLDIDRFKEVN 132 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG A GD +LV + RRI + ++ D ++RL G+ F IIL K A + ++ Sbjct: 133 DALGHAQGDLLLVEIGRRITKCVRESDTVSRLGGDEFAIILSDLEQIEKSGHVAQKIIEA 192 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +AMP L + V+AS+G + + S + NA+ AMY AK GGN V + + Sbjct: 193 LAMPFRLGDNTSFVSASMGITLSPNDAVDSDTLRVNADEAMYLAKKSGGNRVCHYTKALR 252 Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 +S+ R + DL A+ ++ + Y PI+ + +I EAL++W HP++G + F+ Sbjct: 253 KSNETRRRMLSDLRGALLKKQIKVQYQPIVEIATGKIFKAEALMRWQHPEFGVVEPKRFI 312 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG--MQA 816 +AEE +I + ++ + R++ WR+ P + +N++ N Sbjct: 313 PLAEESGLIHELGDWIFQEATREVARWRELF-DPKFQVSVNVSPVQFRQNGKSHEPLWIR 371 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + + S + + +E V++ + L LRK GI + LDDFGT S L+YL Sbjct: 372 HLRREDLSGRSLIVEITEGVLVKAEMSVKENLLLLRKAGIQVALDDFGTGYSSLAYLKTF 431 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + A+ II MA + +IA+ E + L GCDY Sbjct: 432 DIDYLKIDQSFVRNMGADTDDQALCEGIIVMAHKLGLKVIAEGGETEKQLSILESFGCDY 491 Query: 935 IQDSHVASPLGFNSILKLLKER----FPLVKNT 963 Q + + ++ +L+++ P+ Sbjct: 492 AQGWLYSKAVTAENLEIILQKQADAALPVSGRA 524 >gi|196250282|ref|ZP_03148975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. G11MC16] gi|196210171|gb|EDY04937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. G11MC16] Length = 802 Score = 485 bits (1250), Expect = e-134, Method: Composition-based stats. Identities = 141/584 (24%), Positives = 266/584 (45%), Gaps = 23/584 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 V I +L+ I + + + ++ +R + + V V Sbjct: 230 AVSIYLLVLHRQIGRKV-LAAHKKTLAANEQRLRQLAEMTMEGVIVC-ASGKIVEVNEAA 287 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 +LG + ++ IND ++ S R + E R D Sbjct: 288 CRLLGYRESELV--------HLPINDVVVDGSMRPSCSNNGVERFEIELR--RKDGAVFP 337 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 I ++ + G + + + D+T QK++ E + D LTG+ N+++ + Sbjct: 338 AEI-VQHCYDDEGQKVTVVAV-RDLTAQKQNEEPMHDIVSHDELTGLANKEAMYKVVERR 395 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L + + VM++++ K IND G AVGD+VL+ L RR E + + R SG Sbjct: 396 LADAKR-FHREAAVMLLEVTSIKTINDFYGYAVGDEVLLHLARRWSE--QEGITVGRWSG 452 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 N F +L +++ K + A + + PI + E+ VT ++G + + + ++ Sbjct: 453 NEFIAVLPD-SSNEKAEEAAKRLIEVADEPIAVNGLELYVTVNVGISVYPKDGEETKTLI 511 Query: 675 KNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 + A++A Y A+ + + ++ +++ ++ DL A+E E L Y P IRL D Sbjct: 512 RKADIARYEAREKVVSDFLFFNELMADRLHEKMAMERDLRRALEREEFELYYQPQIRLYD 571 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +++G+EALI+W HP+ G I S F+ IAE+ MI IN +++ + DQ Sbjct: 572 RQVIGMEALIRWRHPEKGFIPPSLFIPIAEQTGMIIRINEWVIRTACQQTKQLIDQFPH- 630 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +N++ + + + L++ T P + L +E + M + E + +L +L+ Sbjct: 631 -LSVSVNLSPYEFESRRFVDKLARLLADTGLPPHHLDLEITERMTM-DTEHAFDILSKLK 688 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT 912 +G+++++DDFGT S LSYL +P D +K + S + K+ IL SII + NI Sbjct: 689 SLGVTISMDDFGTGYSSLSYLTDLPIDRLKIDRSFVQHIQGKKDVILPSIIRLGHNIGVK 748 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 ++A+ + E + L CD Q + + PL + ++ L E+ Sbjct: 749 VLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYGEFVRFLTEQ 792 >gi|326779157|ref|ZP_08238422.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces cf. griseus XylebKG-1] gi|326659490|gb|EGE44336.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Streptomyces cf. griseus XylebKG-1] Length = 641 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 142/622 (22%), Positives = 275/622 (44%), Gaps = 29/622 (4%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + + + V I S+ A + + Sbjct: 18 VPPAPVTERHAAAMDPAVTDPPTGSPGGAPPPPDDGDPIASELRDHRAAFNAATLPMGVV 77 Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D V + +LG A+ + G + L + +DR + RR R + Sbjct: 78 DGRGHVVRANEALGGLLGTAAAVLAGRRASELLDLASDDRT--WHAYREVLLGRRSRFRC 135 Query: 482 EFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 R++ D + W I + PM+ + + R + D++++++ E + D +T Sbjct: 136 TRRLKHPDGRSLWAEITVVPMTGASAAEPARVLLTVADVSDRRELQERLRHLQMHDPVTR 195 Query: 541 IPNRQSFLDRLTTILDLSA-------TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 +PNR F +RL + L+ + R + +D+D +K IND LG GD +L Sbjct: 196 LPNRTLFFERLASALETPPYQDDSMPPRQHARIGLCYLDLDGFKAINDTLGHRTGDRLLA 255 Query: 594 SLTRRIGELLKFPD--------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 ++ R+ + + ++ARL G+ F I++ + ++A+ A ++ ++ P Sbjct: 256 AVAARLTDCAENDASRRPGGSRLVARLGGDEFAILVEDSAGTEELAELARSVLAALQQPF 315 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR- 704 +L + ++V+ASIG T++ + + +++ A+ +Y AK G F Sbjct: 316 DLAGQRLSVSASIGVVERTAAGTSPTGLMQAADTTLYWAKADGKARWTLFDPERNAHRMT 375 Query: 705 -VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + L AVE E L Y P++ + D + G+EAL++W+HP++G + + F+ IAEE Sbjct: 376 RQSLSSTLRPAVERGEFTLEYQPLVGMADGVLRGVEALVRWNHPQFGVLPPNRFVQIAEE 435 Query: 764 LCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 I + ++L R W D + PP+FI +N+A + + D++L + ++++T Sbjct: 436 DGSIVQLGRWILRTACRQARRWELDHPDEPPLFISVNVAVRQVWDSDLVADVAQILAETG 495 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 +P ++L +ES VMG+ R L L +G+ + +DDFGT S L+YL +P +K Sbjct: 496 LAPGLLQLELTESAVMGSGGRPLRALQALSDMGVRIAIDDFGTGYSNLAYLSRLPVSVLK 555 Query: 883 FNGSLMTG--------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 +G+ + G + I+ +++ +A + T+ A+ + + L R+GCD Sbjct: 556 LDGAFVKGFRYEDGTHPSPADETIVEAMVQLAHRLGLTVTAECVETAGQAERLRRIGCDT 615 Query: 935 IQDSHVASPLGFNSILKLLKER 956 Q + + I L+ R Sbjct: 616 GQGWLYSRAVAPEQIAGLIGSR 637 >gi|150395798|ref|YP_001326265.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae WSM419] gi|150027313|gb|ABR59430.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sinorhizobium medicae WSM419] Length = 772 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 130/443 (29%), Positives = 226/443 (51%), Gaps = 7/443 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ + I A D LTG+PNR F +++ +L+ D + +D+D +K IN Sbjct: 332 ERKRAEDRISFLAHHDALTGLPNRVLFEEQVDGMLEEIRERDQC-AVLAFLDLDNFKLIN 390 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639 D LG A GD++L ++ R+ ++ D + R+ G+ F I+L + +R Sbjct: 391 DSLGHAAGDELLKAVAGRMRASVRKADFVVRVGGDEFIILLNGLPKERDIVLSRLEDIRS 450 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +IAMP+ L R + V+ S+G A + + T+ E+L NA++AMY AK G ++++ F Sbjct: 451 AIAMPLQLQGRSLQVSCSMGVACFPNQGRTAGELLANADMAMYRAKELGRDNIQVFTEEM 510 Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 +R+ +E+L A+ E L + P + L I EAL++W+HP G IS S F Sbjct: 511 AARAHERLQWQEELREALAGEEFLLHFQPQMNLGTGRIFAAEALLRWNHPVRGIISPSVF 570 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I I + L R + +W+D PP+ I +N++++ + + + Sbjct: 571 IPLAEETGLIVPIGDWALRAACRQLKAWQDAGL-PPLIISVNVSARQFRERNWASRVAEI 629 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T ++L +ES++M + + + L IG+ L +DDFGT S LS L P Sbjct: 630 LKETGLEARYLELELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFP 689 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S +T +AI +II +A+ + +IA+ + E ++ L + GCD I Sbjct: 690 VRRLKIDRSFVTDIPLDADDMAITSAIISLAQKLGLRVIAEGVESEAQVEFLQKAGCDEI 749 Query: 936 QDSHVASPLGFNSILKLLKERFP 958 Q + PL + LL P Sbjct: 750 QGYFFSRPLSAEAFESLLSSARP 772 Score = 49.6 bits (117), Expect = 0.003, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 5/130 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFR 465 + D ++ D + GL S + G L H ++ Sbjct: 53 LEAMINHVPDYIYAKDTEGRFLIANEVTVADNGLESLQDLVGKTDFDL---HPHEFAQAV 109 Query: 466 T-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + E R + W++ P+ + +G I+ +GI+ DIT++K Sbjct: 110 AGTERRVLETGEPIFGIEERAIVTKGRDRWLMTSKVPLRSKSGKIIGIVGISRDITDRKS 169 Query: 525 SLEGILCNAF 534 + + A Sbjct: 170 AERLLEGQAR 179 >gi|300782315|ref|YP_003762606.1| signal transduction protein containing EAL, PAS and GGDEF domain [Amycolatopsis mediterranei U32] gi|299791829|gb|ADJ42204.1| signal transduction protein containing EAL, PAS and GGDEF domain [Amycolatopsis mediterranei U32] Length = 773 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 268/580 (46%), Gaps = 16/580 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 + + + + + E+ V + V P Sbjct: 199 LAVRVSAAEMNDGYVLVCADETARRRAEQNYRTVVASLDEGVLVMGPGGLIEAANPAACR 258 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHW 494 ILG+A + G + L + + + S R G R+R D + W Sbjct: 259 ILGVAEADLIGVPCHTLTLFTESGKWIPPEEMPSVQTRRTGVTHNGLVVRLRRPDGRDVW 318 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + R ++ + + + DITE + + +A D LT + NR + Sbjct: 319 VSLTSRLLAPDDPAAMAVVTSFTDITETRAISAQLAYDATHDPLTRLANRTL-------V 371 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L + TV+ +D+DK+K IND LG +VGD VL + R+ D++ RL G Sbjct: 372 LGGLDARERGAVTVLFLDLDKFKVINDSLGHSVGDQVLRIVGERLRRSSGRDDLVGRLGG 431 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEM 673 + F ++ + +++ A +R ++A PI +L R++ + ASIG + ++ ++ Sbjct: 432 DEFVVVTAEVTDPVEVHALAEHLRAALAEPIGVLGRQLHLDASIGVVLVGRDDRRSAEDL 491 Query: 674 LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 L++A++AMY AK G F V R+ +++DL AV + +L+ Y P++ L Sbjct: 492 LRDADVAMYQAKSLGRGRHHFFDVGLRERMQRRLRMEQDLRYAVHDGQLWPAYQPVVDLR 551 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 E+V +EAL++W HP+ G IS +EF+ +AEE +I I ML R++ + R Sbjct: 552 TGEMVAVEALLRWTHPRHGAISPAEFIPLAEESDLINVIGKEMLRATTRELAA-RRVQQG 610 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +N++++ L D L +Q ++ T + L +ES +M + E + +L L Sbjct: 611 LDLTLKVNLSARQLDDPHLVPAVQDALAATGLPAGALCLEVTESALMRDQEAAAEVLASL 670 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909 R +G+ L +DDFGT S L+ L + DT+K + S +TG E AI+ SII MA + Sbjct: 671 RSLGVLLAIDDFGTGYSSLAQLRRLTLDTLKIDRSFITGIAESRDAEAIVTSIIAMAHAV 730 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + T+IA+ + ++ L +GCD Q H+ P+ + Sbjct: 731 DLTVIAEGVESAEQLELLRALGCDQAQGYHLGRPVSAAEL 770 Score = 46.9 bits (110), Expect = 0.019, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 17/153 (11%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +++ +G Q V+ + Q+ V D + + P + Sbjct: 95 VLVRLGEAAYQVVMRDITAKKAAADALRYQAALVSHVSDALIATTGEGVVTSWNPAAEAV 154 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G + + LD R G + E R D + + Sbjct: 155 YGWTAAEAVGRRAS----------ELVGAPLDLPAIRRGGGV-AEAVHRHRDGAPLAVRV 203 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 M++ Y+ + D T ++++ + Sbjct: 204 SAAEMND------GYVLVCADETARRRAEQNYR 230 >gi|257059243|ref|YP_003137131.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256589409|gb|ACV00296.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 840 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 137/564 (24%), Positives = 259/564 (45%), Gaps = 13/564 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPY 455 + + +R L V + + + + + +LG + + G + L Sbjct: 279 EAKLTTGKDRYRLFVEQATEGILLVNCETQYIIEANQAYCHLLGYTTAEIIGLSLHQLIA 338 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 I D+ L S V E R D + +I + +I + + Sbjct: 339 I---DKAIIDQEL-SCVTSETPYFIKESIHRHKDGSLISVSGKINRTTYQGQEI--FCLV 392 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI ++K++ E + A D LT +PNR+SF +L LD + +L VM +DID Sbjct: 393 IRDIRDRKQAEEQLQYQALHDPLTNLPNRESFNQKLVLALDHAQRYQHL-MAVMFVDIDS 451 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 + IN+ LG ++GD +L S +R+ ++ D +AR + F ++L N+ A Sbjct: 452 FTNINNTLGPSIGDRLLDSFGKRLSSCVRTGDTVARWGSDEFVLLLPQIKNTEDTVKLAQ 511 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ +P L + + V SIG A + +LKNA A+ K +G NH + + Sbjct: 512 RIFDNLQVPFILDDHRLPVKCSIGIAVYPQDGEAGETLLKNAGTALGRTKEQGRNHYQFY 571 Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + S + + ++ L +E + +L Y P I L +++VG+EAL++W+HP G I+ Sbjct: 572 NPNLSSEAALLLRLESLLHQGLEKKQFFLHYQPQINLKTKKVVGMEALLRWEHPSLGIIN 631 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +F+ +AE+ +I + ++L+ ISW+ PPI I +N++++++ L E Sbjct: 632 PQKFIPLAEKTDLILHLGKWVLQTACEQNISWQKDGL-PPISIGVNLSAREVQQPNLAEV 690 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + +++ P ++L +E + + ++R L L+ +G+ + LDDFGT S L YL Sbjct: 691 VARVLNDIGLDPQWLELELTEMSLRQHLTQARKSLRDLKNLGVRIALDDFGTGFSSLGYL 750 Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 F T+K + + + I+ + + ++K I+A+ + E +K L+ + Sbjct: 751 QQFSFRTLKLHQAFIRDLRGTSEELGIISAALAISKGFNMRIVAEGVETEEQLKILSNLN 810 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C+ IQ + PL L+ Sbjct: 811 CEEIQGYCFSRPLPVKEATVFLQN 834 >gi|307824938|ref|ZP_07655160.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307733985|gb|EFO04840.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 1572 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 121/439 (27%), Positives = 208/439 (47%), Gaps = 6/439 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K+ + + A D LTG+PNR+ F +RL + + V+ ID+D++K++N Sbjct: 1134 ERKRIEQQMYRQASYDQLTGLPNRRLFGNRLREEIVKAER-GAYSLAVLFIDLDRFKEVN 1192 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG GDD+LV +RI ++ D +ARL G+ F +IL + + A + + Sbjct: 1193 DTLGHDAGDDLLVEAAQRIRLCVRESDTVARLGGDEFVVILPKVDEIVPQDRVAQCIVDA 1252 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699 + P L E+ V+ASIG A + + ++ A+ AMY AK G N F Sbjct: 1253 MVRPFLLGEQNAYVSASIGIAGYPQDADNAEVLIGCADQAMYVAKSMGRNCFSFFTHGML 1312 Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ + DL A++ +L + Y PII ++ + V EAL++W HP+ G + F+ Sbjct: 1313 EQARHRLELVNDLRGALDAGQLEVYYQPIIEVVSGKAVKAEALLRWHHPELGMVPPDRFI 1372 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQAL 817 IAEE +I+ I ++ A W + + I +N++ + + + Sbjct: 1373 PIAEETDLIQEIGAWVFREAADTAKRWHGLSEEDGVGQISVNMSPRQFTKDSGVQTFIDY 1432 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + PS + + +E +++ + L LR GI L+LDDFGT S ++YL Sbjct: 1433 LQEAAIDPSYLVVEITEGLLLDDCSAVTEKLELLRAAGIQLSLDDFGTGYSAMAYLKKFN 1492 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + AI +I+ MA + +IA+ + E L +GC+Y+ Sbjct: 1493 IDYLKIDRSFVRDLETDPGDRAIAEAIVVMAHRLGLKVIAEGVETEGQRALLMAVGCEYV 1552 Query: 936 QDSHVASPLGFNSILKLLK 954 Q A P+ + L + Sbjct: 1553 QGYLYAKPMPVEAFLAYVA 1571 Score = 84.2 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 62/187 (33%), Gaps = 3/187 (1%) Query: 342 PAWILIFIWFIGLWMAITKRL--DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 W + + + + I+ +V F +++ + Sbjct: 657 QHWGELISGMSTITLETRHQTKEGGIILLEVNANPIVYQGRYYNFALVRDITERKQMETE 716 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + V S D ++ +D R+ P + ++G + + + + + Sbjct: 717 LRQRELEFRVLVENSPDPIFRYDRDCRRIYANPAVEKLVGCPASQLINRMPSDASVVSAY 776 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + + + + + E A D Q H+ R P G++ I IA DI Sbjct: 777 EGEKLVQAIRQVLET-GLTAESEVEFIADDGQRHYFHNRYAPEFGPQGEVAGVISIARDI 835 Query: 520 TEQKKSL 526 TE+K++ Sbjct: 836 TERKQAE 842 Score = 78.1 bits (191), Expect = 7e-12, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 5/108 (4%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + I + GL+ + H D L+ G + + E R+ Sbjct: 499 FASAGIEALFGLSPEDIRDDAEVLRARYHPEDLPRVIAQLEKS-GRKLSPYRIEIRILHP 557 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 W+ IR P +G + G+ DITE+K S E A D Sbjct: 558 HKGLRWIEIRSTPQRQPDGS-TEWHGLMIDITERKASDEQ---LALLD 601 Score = 64.6 bits (156), Expect = 8e-08, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 10/138 (7%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + E+ +L A+ G+ V+ D + + + +LG + + Sbjct: 589 ERKASDEQLALLDYALDHVGEAVYLTDEDSRILQVNEEASRMLGYTRAELLEMRIVDIDL 648 Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + +R + + E R + + + + P+ G + Sbjct: 649 DLGPE---RWRQHWGELISGMS-TITLETRHQTKEGGIILLEVNANPIV-YQGRYYNF-A 702 Query: 515 IANDITEQKKSLEGILCN 532 + DITE+K+ + Sbjct: 703 LVRDITERKQMETELRQR 720 Score = 63.8 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 65/241 (26%), Gaps = 29/241 (12%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 V ++ + T L Q IF + + D V+ D + Sbjct: 313 AVTSMLQLVATSAAAELERRQSEQAIFESRQFLVRVIDAIADPVFVKDREHRWLLLNQAC 372 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 ++G + + G + D V E + Sbjct: 373 CELIGHSRAELLGKSDSDYF---PEHEARALQEGDDAVFDSGLENGSENEITDGQGVKRT 429 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + ++NG + +GI DITE+K+ +L A +L Sbjct: 430 ISTTKSCFLDNNGQPV-LVGIIRDITERKQYELNLLKRA----------------QLEEQ 472 Query: 555 LDLSATDDNLRPTVMVIDIDK-----YKK--INDVLGIAVGDDVLVSLTRRIGELLKFPD 607 L A + + +D + I + G++ D + + D Sbjct: 473 LSCLADSVPGFIYTIRLSLDGHASFPFASAGIEALFGLSPED--IRDDAEVLRARYHPED 530 Query: 608 I 608 + Sbjct: 531 L 531 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 70/203 (34%), Gaps = 23/203 (11%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + G I + ++ + ER V +V +D R+ P + I+G Sbjct: 825 VAGVISIARDITERKQAENLRHQRERELRTLVENLPTMVVRYDRNFQRIYVNPAYSQIIG 884 Query: 440 LASGSMHGPI--RNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 M G ++W I + + ++ + E+ D + + Sbjct: 885 RTEAEMFGSPLKKSWRATNISAESYQAILSGV--MRSGKKAEVSLEW--TDGDGRLISHV 940 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKS-------LEGILCNAFQDNLTGIPNRQSFLD 549 ++I P +++G I + + D++++++ A D N L+ Sbjct: 941 MKIVPECDADGKIDSVLALGFDLSDRRQQQVVEANRQRVFEKMAHGD------NINGILE 994 Query: 550 RLTTILDLSATDDNLRPTVMVID 572 ++ ++ S ++++D Sbjct: 995 QVALYVESSK--SGRYCAILLLD 1015 >gi|254502187|ref|ZP_05114338.1| hypothetical protein SADFL11_2225 [Labrenzia alexandrii DFL-11] gi|222438258|gb|EEE44937.1| hypothetical protein SADFL11_2225 [Labrenzia alexandrii DFL-11] Length = 1020 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 137/620 (22%), Positives = 249/620 (40%), Gaps = 18/620 (2%) Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 A + + I + + L + + +A Q Sbjct: 388 AMTEAAFTALLVGDGIDGFENRYVCACGAAKYLRWSARSDVDRQLIYAVAQNITEQK--K 445 Query: 403 DGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 LA S + + DI V I G + G + L + Sbjct: 446 AENALKLAANVFTHSDEGIIITDINGAIVDINEAFTDITGYERDEILGNNPSILSS-GKH 504 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D D ++T+ + G Q E + D + I + + +G+ YIG+ DI Sbjct: 505 DADFYQTMWSKLR--KDGVWQGEIWNKRKDGDVFAERLTISAIEDESGNTTNYIGLFVDI 562 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T+ K + A D LTG+PNR D + + + + + ID+D +K + Sbjct: 563 TKMKAHERQLEHLARYDRLTGLPNRVLLADNMQQAMARARRHGHT-LAIAFIDLDGFKAV 621 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G A GD++LVS+ R+ ++L+ D LAR+ G+ F I+ + + Sbjct: 622 NDTYGHAAGDELLVSVAHRLTKVLRTEDTLARIGGDEFVAIITDLPDEKSCVSTLNRILD 681 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + + L +V+ASIG + ++ ++ + A+ AMY AK G N + F Sbjct: 682 AASKEFKLGAATASVSASIGVTFYPQTEEIDGDQLERQADQAMYEAKISGRNQYKFFDPE 741 Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R + D A++ L Y P IRL +E++G EALI+W HP+ G + Sbjct: 742 QDRRLTEYYAQVADAKKALKTDAFRLHYQPKIRLATKEVIGYEALIRWQHPEKGLLMPGA 801 Query: 757 FMLIAEEL-CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ E + + ++L+ I W + + +N+++ L ++ E + Sbjct: 802 FLPPIERHPDVAIELGNWVLDNALEQIERWNEVGLDT--TVSVNVSALQLTSSDFEETLN 859 Query: 816 ALISKTLYS-PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + K + P ++++ E+ + + ER ++ R + LDDFGT S L+YL Sbjct: 860 KHLQKHPAAEPCQLEIEILETDALSDIERVSKIIRNCRLSSVRFALDDFGTGYSSLAYLK 919 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P DT+K + + S + +L+ II + + ++A+ + + L GC Sbjct: 920 QLPIDTLKIDQGFVHDSLNNAQDQELLKLIISLGRVYNIDVLAEGVETPAHAELLHTYGC 979 Query: 933 DYIQDSHVASPLGFNSILKL 952 Y Q A P+ + +L Sbjct: 980 RYAQGYAFARPMPADDVLDW 999 Score = 64.2 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 54/194 (27%), Gaps = 9/194 (4%) Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATGYFSQGI 400 + I +++ + + L LI + + V + Sbjct: 269 GMLAILATLTVVFLVWRYFTLSSFNNRLRLSKLQLINLNETLETRVRNRTRELSEEVEER 328 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 S + D + LG + ++ ++H D Sbjct: 329 KRSQRDLETFFNQSQSLNLIVDFKGRILRLNDSWEDFLGYELKEVAERP--FIEFVHPED 386 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R + + G +E R A ++ R S+ + ++ + +IT Sbjct: 387 RAMTEAAFTALLVGD-GIDGFENRYVCACGAAKYLRWSAR--SDVDRQLIYAVA--QNIT 441 Query: 521 EQKKSLEGILCNAF 534 EQKK+ + A Sbjct: 442 EQKKAENALKLAAN 455 >gi|242239488|ref|YP_002987669.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Dickeya dadantii Ech703] gi|242131545|gb|ACS85847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Dickeya dadantii Ech703] Length = 718 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 243/577 (42%), Gaps = 21/577 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 T++ L S S D V + L Sbjct: 152 ATLVMDRLEMRRLDLARKSSQACFESVSESSPDSVLCVNDKGIITYWNQAAEKCLEYTGE 211 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ---YEFRVRAADNQFHWMIIRIR 500 + G + I + F L + + E R + + + Sbjct: 212 QIIGEH---ISTIIPD---MFVVQLHHLATDKVSLFRKSAMELEARTLSGTLVPVELSVS 265 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 N + RY I D+T++K+ E + A +D LTG+ NR L +L Sbjct: 266 --MWQNDNQTRYGAILRDVTDRKRYEERLFLQAHRDPLTGLANRTLLASTLDHVLK---- 319 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 +L V++ID+D +K IND LG + GD++L S+ +R+ + D++AR+ G+ F ++ Sbjct: 320 -SDLAVAVLIIDLDGFKDINDSLGHSSGDEILTSVAKRLQANARPEDLVARMGGDEFAML 378 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L N +AD A + I+ + + ++I ++ASIG S +TS ++L +A+LA Sbjct: 379 LPGLNTEELVADLAERIINDISQAVQIDNQQINISASIGIVMSPSHGMTSQDLLTSADLA 438 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738 +Y A+ G N F + L A E E + Y P + L+ ++VG Sbjct: 439 LYKAQSDGRNCYRFFTRELREVFQARHAFQLEFIRAYEQKEFEVFYQPQVSLISNKVVGA 498 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP G ++ + F+ E + I +++E + W I I Sbjct: 499 EALLRWRHPYKGLLTPAVFLSALERGPWAERIGDWVVETACQQAAEWYK-GGAENFRISI 557 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+ + L + +Q++++K+ PS ++L +E++++ E L LR +G+ + Sbjct: 558 NLFAAQFRSGMLAQKIQSVLAKSGLKPSSLELEITENIILRYDENMLKPLNELRSLGVGI 617 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 DD+GT + LS L P +K + + + + AI+R+I+ + K+ +IA+ Sbjct: 618 AFDDYGTGYASLSMLKNYPVTRLKIDQTFVRTMCDSAPDAAIVRAILYLGKSFGLDVIAE 677 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + E + L GC+ Q P+ KLL Sbjct: 678 GVETEEQCERLRNKGCEQAQGYLFGHPMPSTEFEKLL 714 >gi|119715377|ref|YP_922342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nocardioides sp. JS614] gi|119536038|gb|ABL80655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nocardioides sp. JS614] Length = 883 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 132/574 (22%), Positives = 253/574 (44%), Gaps = 11/574 (1%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 L Q + R + V D V+ I + + G Sbjct: 121 LRRVRRAVEHARVRAALQESEAAVARLTGIVESVADAVFTTTIDGLVTSWNDGAEALYGF 180 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + M G + +H D R IL + + R R D + + I + Sbjct: 181 PAAEMLGAP---IATLHPPGSDEPRRILTMVRAGKAIQGLDTLR-RTRDGRMAQVSISVT 236 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + + + +A DI+++ + ++ D LTG+PNR RLT + Sbjct: 237 GLRDHRDGLSGMVVVARDISDRLELEAELVRQTMHDALTGLPNRSFLTYRLTQAIAEGRR 296 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ +D+D+++ NDV G GD VL + R+ L + D++AR+ G+ F ++ Sbjct: 297 RGRPVAALL-LDLDQFRAANDVHGHLTGDRVLTEVADRLRVLARPTDVVARIGGDEFVLV 355 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + A + +++ PI + R + V AS+G A + +LK+A+ A Sbjct: 356 CPD-TDVAAAGRLAEQVIEAVGAPIQVEHRALRVGASVGIAVAPPLDCDAEVLLKHADAA 414 Query: 681 MYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK RG + F + R ++ ++ DL A+++ L + + P++ L + +VG Sbjct: 415 MYEAKKRGRARSQVFDPALARLAGEQRLLAGDLRAALDDDRLEVHFQPVVDLTSDRMVGF 474 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFIL 797 EAL +W HP G + F+ IAE + ++ ++L+R R + P + + Sbjct: 475 EALTRWHHPTRGAVPPGTFVPIAEAHGFVADLDHWVLDRACRQTAAALATGELTPGVHVA 534 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++++ L + L + + ++ ++ P+ + L +E+ + +PE +R L LR +G+ Sbjct: 535 VNLSARSLDEPNLVDTVGEVLDRSGLPPAALVLEATETALPRDPEAARASLAGLRDLGVG 594 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915 ++LDDFGT S LS+L +P VK + S + + + +AI +I+ +AK + IA Sbjct: 595 ISLDDFGTGYSSLSFLRELPVTGVKIDRSFIRNAVERPEDLAITEAIVRLAKGLGLETIA 654 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + I + L +GC Q + + + Sbjct: 655 EGIETAEQRELLRDLGCARAQGFWWSPAVPMAEL 688 >gi|89093125|ref|ZP_01166076.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp. MED92] gi|89082775|gb|EAR61996.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp. MED92] Length = 923 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 140/558 (25%), Positives = 262/558 (46%), Gaps = 9/558 (1%) Query: 391 LATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 A + ++ +R++ A+ + + + D P I G + G Sbjct: 351 FARDVSDRKHAAERQRKAEAIFNSASEAILLSDAYSKVKMINPAFTKITGYEESEIIGQN 410 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 + L +D++ +RT+ + G Q E R + + + + + + NG++ Sbjct: 411 ASMLSS-GQHDKEFYRTMYAAL--ETEGLWQGEVHNRKKNGELYVQWQTVVALKDGNGNV 467 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 Y+ I +DITE+K++ E I A D LTG+PNR + L L S + + VM Sbjct: 468 DEYLAIFSDITEKKEAEEEIKYRANYDQLTGLPNRTLLHELLRQELQHSRRESK-KCAVM 526 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D +K+IND LG AVGD +L +++ + E ++ D++ARL G+ F +IL +N+ Sbjct: 527 FLDLDHFKRINDTLGHAVGDLLLQTVSELLQETIRESDVVARLGGDEFIVILSDVDNATD 586 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 I+ A + + P+++ + EI SIG A + E+L +A++AMY AK G Sbjct: 587 ISTVAEKIVSVLDTPLSIDDHEIRTCTSIGIAVYPDDAFEEGELLSHADMAMYKAKESGR 646 Query: 690 NHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 F + R I+ +L A+EN +L + + PI+ + D+ I+G E+L++W Sbjct: 647 GQYRFFNADMAKEIRSSRSIEIELRNAIENEDLAVAFQPIVSMGDKAILGFESLMRWPES 706 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 N S + + AEE +I+ + + E+ AR+ + + P ++ IN++S + + Sbjct: 707 ANHNTSIEQSIRNAEEFGLIQPLFEVVFEKAAREFSRLPLRNDNPQLYFSINVSSHQIPE 766 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 E ++ + + + L +E + + + + R R GI + LDDFGT Sbjct: 767 RLSLEWIEERLRYYGLANENLVLELTEGIFLSDSPENLRWFKRARDKGIRIALDDFGTGY 826 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL D +K + S + E ++++S++ ++ +IA+ + E Sbjct: 827 SSLAYLKRFTVDFLKIDRSFIADLDELGADYSLVKSVLALSDAFGLKVIAEGVETEKQAS 886 Query: 926 ELTRMGCDYIQDSHVASP 943 L +GC Q + P Sbjct: 887 ILAELGCKTAQGYYYGKP 904 Score = 48.8 bits (115), Expect = 0.005, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 30/232 (12%) Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365 T S+A + + ++ +Y + L A I +G + + + Sbjct: 158 QTVSLALFEVILVAIFSAVLGVYLTRQLNS----LTFASNKIRDGHLGFTLPVRGNDELA 213 Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + + + T+ + + + + +R + ++W + Sbjct: 214 DVVRSFN--------TMSTTLKKLEIKESQEKEQLEIAHQRMRSLLDNFPFLIWLKNTDG 265 Query: 426 DRVTTTPDIATILGL-ASGSMHGPIR------NWLPYIHINDRDNFRTILDSFVGYRRGR 478 + ++ A G + G + ++D + V + Sbjct: 266 EFLSVNKAFAEACGKKDPLEVEGLTDFDVWPVDLANDYRLDDLKVITSSQGKVVEEKVES 325 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 D + W+ P+ N +++ +G A D++++K + E Sbjct: 326 ----------DGERTWIETFKSPVL-HNNEVIGTVGFARDVSDRKHAAERQR 366 >gi|94265549|ref|ZP_01289296.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93453949|gb|EAT04299.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 730 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 136/607 (22%), Positives = 246/607 (40%), Gaps = 44/607 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQS-------LAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 ++ V Q I ER + GD V +T Sbjct: 124 IAALERVREKKQLRQNIREGEERLQRSEGFLHSVLETLGDAVVVIGRDLRIITANRGYRQ 183 Query: 437 ILGLASGSMHGPIRNWLPYIH------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 G + G + + + D ++ + R + R + Sbjct: 184 QSGRGEEEIIGQHCYRISHGYSRPCWLEEDC--VCAVIQAIKEGRPANSIHIHR--DKEG 239 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-------CNAFQDNLTGIPN 543 ++ P+ + NG I + DITE K+ + AF D LT +PN Sbjct: 240 VPLYVETNAYPLRDQNGHIYAAVETIRDITEIKELEQEKRAKEAEIERLAFYDFLTDLPN 299 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R+ DRL S V+ +D+D +K +ND G GD +L RR+ + + Sbjct: 300 RRLLQDRLEQAFAASERSGQY-GAVIFLDLDNFKNVNDTRGHRTGDLILQMTARRLRDTV 358 Query: 604 KFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPI---------NLLE 649 + D +ARL G+ F I+L + E ++ A +R ++A P +L Sbjct: 359 REDDTVARLGGDEFVILLSNLATQSETAISRVGRVAEKIRLALARPFKLIKPQQGSSLES 418 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMI 707 E + AS+G A + + ++ E+ K A+ AMY AK G N F + + + Sbjct: 419 GEFHLGASLGIALFRGHENSAEELFKYADTAMYRAKEAGRNTARFFDPAMQTALEENESL 478 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + DL AV + L Y P + ++G EAL++W H G +S F+ ++EE +I Sbjct: 479 ERDLRRAVVQEQFELYYQPQVDAA-GRLLGAEALLRWYHSARGPVSPLSFIPLSEENGLI 537 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 I ++L+ R + +W + + IN++++ + +Q +I+ P + Sbjct: 538 LPIGRWVLQEACRQLAAWSQSFPVGDFRLAINVSARQFHQPGFVDEVQEIIAAARVEPRQ 597 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 IKL +E++V+ + + + + +L+ G+ +DDFGT S L+ L +P + +K + + Sbjct: 598 IKLELTETLVLTDLDDTIKKMRQLQAAGLGFAMDDFGTGYSSLAKLKQLPLEQLKIDRAF 657 Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + AI +II M + + I+A+ + ++ L GC Q + PL Sbjct: 658 VRDLETDPHDAAIAATIIAMGRTLGFEIVAEGVESAEQLQILQSQGCGIFQGYYFTPPLP 717 Query: 946 FNSILKL 952 +L Sbjct: 718 AAKFERL 724 >gi|253688264|ref|YP_003017454.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754842|gb|ACT12918.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 722 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 134/583 (22%), Positives = 247/583 (42%), Gaps = 21/583 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ L + R S D + + +L Sbjct: 152 ASLVMDKLEMRRLELARRASQVRFENIANTSPDTILCVNEKGMITFWNTAAEHMLEYTDE 211 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIR 500 + G + I + F L+ V R + E V+A + + + Sbjct: 212 EIIGRS---INTIVPD---AFVVQLNHLVADRDSLMKGVTLELNVQAKSGSLVPVELSVS 265 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + D + Y I DITE++++ E + A D LTG+ NR L T L Sbjct: 266 --MWEDNDNISYGAILRDITERRRNEERLFLLAHLDPLTGLANRTLLTSNLETALK---- 319 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + +M++D+D +K +ND LG + GD++LV + ++I ++ D++AR+ G+ F ++ Sbjct: 320 -NEPAVCIMMVDLDGFKDVNDSLGHSSGDNILVHVAKKIKATVRSGDVVARMGGDEFALL 378 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 N+ A + I+ + + + +I ++ASIG + +T ++L +A+LA Sbjct: 379 FPGLNDKKVAGKIAEQIIHEISQAMIIDDHQINISASIGAVLYPEYGLTVQDLLTSADLA 438 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738 +Y AK G N F + L A E E + Y P ++L EIVG Sbjct: 439 LYQAKSEGRNCYRFFTRELLEVFQAKHAFQLEFVRAYEQHEFEMFYQPQVKLATNEIVGA 498 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W HP+ G +S + F+ E + + +++E R W + + I I Sbjct: 499 EALLRWRHPERGLLSPAAFLTALENGPWAERVGDWIVETACRQAAEWCRE-SDRYFRISI 557 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N+ S L + + ++++T PS ++L +E++++ E L LR GI + Sbjct: 558 NLFSAQFRTGMLAQKIMDILARTGLQPSSLELEITENIILRYDENMLQPLKALRDAGIGI 617 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 DD+GT + LS L P +K + + + + AI+R+I+ + K+ +IA+ Sbjct: 618 AFDDYGTGYASLSMLKNYPVTRLKIDQTFVRTMCESPPDAAIVRAILYLGKSFGLGVIAE 677 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + + L GC+ Q P+ +LLK P+ Sbjct: 678 GVETLEQSERLRGKGCEEAQGYLFGHPMPAEEFTQLLKLNKPI 720 >gi|299132359|ref|ZP_07025554.1| diguanylate cyclase/phosphodiesterase [Afipia sp. 1NLS2] gi|298592496|gb|EFI52696.1| diguanylate cyclase/phosphodiesterase [Afipia sp. 1NLS2] Length = 492 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 132/500 (26%), Positives = 249/500 (49%), Gaps = 21/500 (4%) Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + +R L S + + ++ + D++ + +PM + ++ + Sbjct: 7 PKELKQYRADLLSRLATAKNTIRI---IETTDDREISISN--QPMRDG-----GWVITHD 56 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITEQ+K+ + A D LTG+ NR + +++ + R ++ +D+D+++ Sbjct: 57 DITEQRKAEAKLSHMAMHDALTGLFNRAAIREQIESCFRNLR--HGERFAILFLDLDRFR 114 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND LG GD++L + R+ L+ D +ARL + F ++ +N + A + Sbjct: 115 SVNDTLGHEYGDELLRQVGDRLRGRLQKGDTVARLGDDEFVVLQCEADNPTNPSKLASKL 174 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 I+ P L + + V AS+G A ++ + E+LK A +A++ AK GGN F Sbjct: 175 VDCISAPFELGDHQAIVGASVGIAMASTDADGTDELLKKANIALHRAKEDGGNTCRFFEA 234 Query: 698 SSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 R I+ DL A+ N E L Y PI+ + E+I EAL++W HPK G IS + Sbjct: 235 EMDDMMRSRRSIEMDLRSALSNGEFELYYQPIVSIRSEQICAFEALLRWKHPKRGVISPA 294 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ IAEE +I I ++L + + W ++ I + +N++ ++L + + Sbjct: 295 EFIPIAEETGLIIPIGEWVLRKACIEAAKWPNE-----IRVAVNLSPVQFKTSDLHQVVF 349 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++++ R++L +ES ++ ER+ +L +LR++G+ +++DDFGT S LSYL Sbjct: 350 GALTQSDLKSKRLELEITESALLLENERTLSILHQLRELGVRISMDDFGTGYSSLSYLRS 409 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S + E +AI+R++ + ++ TI + + +I++ L + GC Sbjct: 410 FPFDKIKIDQSFVRDLSHNEDSMAIIRAVTTLGNSLGMTITGEGVETQIELDYLRQEGCT 469 Query: 934 YIQDSHVASPLGFNSILKLL 953 Q + P+ I ++L Sbjct: 470 EAQGYFFSKPVPPGEISRIL 489 >gi|70729284|ref|YP_259021.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens Pf-5] gi|68343583|gb|AAY91189.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5] Length = 572 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 134/563 (23%), Positives = 261/563 (46%), Gaps = 17/563 (3%) Query: 404 GERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDR 461 E+ AV + ++ + D+ + G + + G L +H Sbjct: 2 DEKYRRAVDAA--AIFSETDLGGSITYVNDLFCQVSGYSREELIGANHRMLSSGLHP--- 56 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIANDIT 520 F L + R + E RA D +W+ + P+ + +G ++RY+ I D++ Sbjct: 57 PEFFAELWQTITQGRV-WKGEICNRAKDGSLYWVDSTMVPLVDQRSGQVVRYVSIRFDVS 115 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+++ L + D LTG+PNR D L LD S ++ V ++D+D +K +N Sbjct: 116 EKRQLLHSLQWRVGHDVLTGLPNRAFLSDLLHQALDFS-RAQDIPLAVCMLDLDGFKAVN 174 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G A GD +LV + R+ +++ D++ARL+G+ F +IL + L++ + + Sbjct: 175 DGYGHACGDLLLVEVAARLRSIIRGEDVVARLAGDEFVLILRYVRDMLELRAALQRVLAT 234 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698 I+ P ++ ++I V ASIG + + + +L++A+ AMY AK G N F Sbjct: 235 ISQPYSIQGKDINVFASIGVTLYPTDNHDADTLLRHADQAMYVAKQSGRNRFHLFDVLRD 294 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 E + A+ EL L + P + + E+VG EA+++W HP+ G + + EF+ Sbjct: 295 REVMVTYQTVEQVRQALLAGELRLYFQPKVNMRTGEVVGFEAMLRWQHPQRGMLGAQEFL 354 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 EE +I I ++++++ + W+ + +N+A++ + E ++ ++ Sbjct: 355 QQVEETDLIVEIGEWVMDQVMTRLQGWQQAGLG--WPVSLNVAARHFQRPDFVERLKDML 412 Query: 819 SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + P+ + L ESV + N +R L + G+ +L DFGT S LSYL + Sbjct: 413 DRYPDVLPALLDLEIVESVAIDNIQRVSDCLDACQGFGVQFSLGDFGTGHSSLSYLKRLR 472 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 T+K + + A++++++ +A+ ++A+ + + L +GCD Sbjct: 473 TQTIKIDRLFVRDMLHDADDQALIQALVGLAQAFGRRVVAEGLESLAHGERLMALGCDVA 532 Query: 936 QDSHVASPLGFNSILKLLKERFP 958 Q +A P+ ++L ++ P Sbjct: 533 QGDFIAPPMPAEAVLDWVRSFEP 555 >gi|188583682|ref|YP_001927127.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] gi|179347180|gb|ACB82592.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium populi BJ001] Length = 833 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 151/768 (19%), Positives = 279/768 (36%), Gaps = 50/768 (6%) Query: 220 PTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWNR 277 W + + F ++ L I A + ++ + L Sbjct: 56 VFGCSVWSLHFVAMLAFRPSAQAAYGLLPTAASIGIAVTGALIALLIWCRADHHPLKLAA 115 Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 + + A + +L T + G R Sbjct: 116 AGMVMAAAIAGMHYAGVGAMAANSLLLFDGAYVHASLGLCAILAVTALARAGDLTGLGRR 175 Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDII--------QPALVGGLVLIVILIGFTVIQH 389 + + L M + L + L+ +++ + Sbjct: 176 IEVSLWLALAICGLHFTGMTALTVAPAAPLEEGGAVLGSTQLGLAVGLVSLVVLAAGLAA 235 Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 +L + + + R L + +++ V + + G Sbjct: 236 LLMQRHLMRRRMDELSRMRLLGNLAHEVLL-IHRDGRVVEINQAGLRLFETTLQEIVGRP 294 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 L D +L EF +R A + + R + G Sbjct: 295 --LLDLFADADAP---ALLRRSRCRPEELRPEEFEIRTAAGLAVPVELSCRAI-EYLGRP 348 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + D++++++ I A D LT +PNR +RL+ L+ +A + ++ Sbjct: 349 ATAVA-LRDLSQRRRDEARIRHLALHDALTDLPNRTLLEERLSLALETAAEN-GASVALV 406 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K +ND G A GD +LV +R+ L+ D LAR+ G+ F I+L + Sbjct: 407 YLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRTLAQ 466 Query: 630 IADFAIAMRKSIAMPINLLER----------------------EITVTASIGFASWTSSK 667 IA+ A + ++ P +L + I + AS G A + S Sbjct: 467 IAETAARLVAALGRPFHLEGQNEGEGKSEGKGEGTSEGKSEGLRIEIGASAGIAVYPSDG 526 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 T+ + + A+ A+Y K G V F + R I+ +L A+ EL L Y Sbjct: 527 STAETLKRAADTALYRVKDEGRGTVRFFEAAMDEQLQARRRIEHELSGAIPRGELQLYYQ 586 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI+ EI EALI+W HP+ G + ++F+ +AE+ I I ++L+ +W Sbjct: 587 PIVNGRTGEIETFEALIRWHHPERGCVPPADFIPLAEQTDQIGRIGAWVLDTACAAAAAW 646 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 P + +N++ K G+ A++ + P R+ L +E V + + + Sbjct: 647 P-----HPWRVSVNVSPKQFRQPGFAAGVAAVLGRYGLPPGRLVLEITEGVFIQDATMAV 701 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSII 903 +L LR +G+ L LDDFGT S LSYL FD +K + S + G + I+R+I Sbjct: 702 EVLTALRTLGVRLALDDFGTGYSSLSYLQRFKFDKIKVDQSFVRRLGRHADTLTIVRAIT 761 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + N+ + + + + + L +GCD +Q A P + + Sbjct: 762 HLGHNLGLQVTVEGVETQEQLAMLRELGCDQMQGYLFARPAPMTELSQ 809 >gi|258405277|ref|YP_003198019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfohalobium retbaense DSM 5692] gi|257797504|gb|ACV68441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfohalobium retbaense DSM 5692] Length = 936 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 144/576 (25%), Positives = 265/576 (46%), Gaps = 11/576 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440 + ++ + + ++ + R + + ++ + A +LG Sbjct: 324 VLIGTVEDITSEMETAKNLEKSEARYRNLFANALEGMYLIGTDDSVICVNQAFADLLGYA 383 Query: 441 ASGSMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + R I+ + + + + E +VR + + W+ Sbjct: 384 SPKDFETSNRGKKFSRIYET--PTVNKNKFNALWTKGKIMHLETQVRRKNGELIWISENT 441 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + + + +IL G DITE+KKS E +L A D+ T +PNR F++++ L Sbjct: 442 KIVKDDHKNILYLQGTIIDITERKKSEERLLHQALYDHRTNLPNRSYFVEKIEKGLKRVG 501 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + ++ D+D + IND G VGD +L+ ++ RI + D LAR S + F + Sbjct: 502 QEPGFSFGLLYFDLDGFGTINDSFGYFVGDRLLLEVSHRIRTAIDETDTLARFSSDEFCV 561 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 + + ++ I D A +R+ + L +EIT+T SIG + + + +ML++ EL Sbjct: 562 MSENRTSAQ-IQDLAENIRQKLEQVFFLDGQEITLTTSIGILEYNVTYTRAEDMLRDIEL 620 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AM AK RG N F ++ +++DL A++ EL L Y PII+L E+ Sbjct: 621 AMLQAKKRGKNRWVIFSSDMYQRKSERTLMEKDLRRALDREELVLNYQPIIKLDSGELNS 680 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 LEALI+W HP+ G IS +F+ +AE+ +I+ I ++L+ R + WR+ + + Sbjct: 681 LEALIRWKHPEHGFISPGKFIPLAEQTGLIEPIGKWVLKEACRQVKIWRES--NKSLIMN 738 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++SK L L + ++ P+ + L +ES M E + L RL+ +GI Sbjct: 739 VNLSSKQLEKAGLERNIYQILQDINLDPACLNLEVTESAAMSKLESNVRTLKRLKFMGIR 798 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIA 915 L++DDFGT S L++L P D +K + S + + I+ +I+ +A ++ ++A Sbjct: 799 LSIDDFGTGYSSLAHLQRFPLDELKIDRSFIISLKAGKACHRIVHAIVELALGLKLKMVA 858 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + I + + C Y Q + + N I K Sbjct: 859 EGIETNSQLNMVKTFNCHYGQGFLFSKAMAANEIEK 894 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 13/192 (6%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + + GLV +++ + ++ + + R A+ S V + Sbjct: 179 VQTTFVPMRNSSGLVDKILI----TFEDSTERKRLNELTYQEKARLRAALANSRQGVCEI 234 Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + + + + +++ IH +DR + + G+L+ Sbjct: 235 DPEANAIYLDLHNVWDHAVKPSAKTKYRKSFDNLIHPDDRQGLLELGKNHTPQADGQLRS 294 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTG 540 FR ++ ++ W+ R + + + + IG DIT E + + A Sbjct: 295 CFRFQSQSKEWRWLQFRGKTLPHYSSGYPVLIGTVEDITSEMETAKNLEKSEARY----- 349 Query: 541 IPNRQSFLDRLT 552 R F + L Sbjct: 350 ---RNLFANALE 358 >gi|160897131|ref|YP_001562713.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160362715|gb|ABX34328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Delftia acidovorans SPH-1] Length = 585 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 121/574 (21%), Positives = 256/574 (44%), Gaps = 22/574 (3%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + D +R +A+ + D + D + P + + G + + G L Sbjct: 14 AAPGEALDEDLKR--VAMEAAPDGILLVDRSGRILLANPAMQAMSGYGAAELLGHSLQML 71 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + + L S+ R + + D + + I + + +G Sbjct: 72 --LPAEAQAAHGPQLQSYFAQPARRPMGQGRDLWLLRKDGKRLSVDIALGHSPHGSGV-- 127 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-----DNLR 565 + D+++ ++ + +A D LTG+ NR F ++ + + Sbjct: 128 -AVAFVRDLSQLRQMEACMHYHATHDTLTGLLNRWQFGLQVEQAISQAQAQSESGAGPAS 186 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 ++++D+D +K IND G VGD VL + RR+ L LAR+ G+ F +L N Sbjct: 187 FALLLLDLDNFKAINDGYGHDVGDQVLKEVARRLQAALGGSATLARMGGDEFTALLQPCN 246 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + A+ + P + + AS+G A + ++ +++ A++AMY AK Sbjct: 247 EPD-LRQRIDALLHELCRPCTIGHYALNFGASVGAAFYPQDAGDAATLMRYADMAMYDAK 305 Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 R + + + +++V++ E L A++ L L + P ++++ ++ G+EAL++ Sbjct: 306 QRSRSSYARYASAMGEAMAEKVLLHERLKRALDRGLLSLHFQPQVQVLGGQVQGVEALLR 365 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+ + G +S F+ +AE +I A+ ++++ R W P+ + +N++++ Sbjct: 366 WNDEQMGWVSPERFVPVAESTGLILALGEWVIDAACRQAGDWLRAG--MPLRVAVNLSAQ 423 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 L +L + + A +++ P ++L +ES M +P ++R LLG L G+ + LDDF Sbjct: 424 QLRQADLQQRLMASLARHGVPPHLLELEVTESAAMTDPLQARELLGSLLAAGVCVVLDDF 483 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L++L +P VK + + + + I++++I +A+ + ++A+ + Sbjct: 484 GTGYSSLAHLRDLPVSRVKIDRTFIGPMLDSPADAKIVKAVIALARTLGLQVVAEGVETA 543 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ L + CD Q A + I LL+ Sbjct: 544 EQLRLLRILDCDAYQGWLFARAMPAEQIPPLLQR 577 >gi|71278464|ref|YP_271624.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71144204|gb|AAZ24677.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 1534 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 148/562 (26%), Positives = 270/562 (48%), Gaps = 15/562 (2%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 ++ ER A + D V+ D R+T + + + L Sbjct: 968 ESRANEERAQYYGDAFQQTQDWVFIIDEKISRITANQSMRAVFDWPEEEF--DFSDKLLG 1025 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + R +R ++ S + E + A+ + +II + +S + L Y+ + Sbjct: 1026 VSQKRRSFYRKLMLSLKEGE--HWRGEELIVTANKDEYHVIINVTVGFSSVTNALHYLFV 1083 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI+ QK + + A D+LTG+PNR L+R+ +D S D V ID+D+ Sbjct: 1084 LTDISAQKSAESELRLLANYDHLTGLPNRTLLLERIKHAIDFSNRRD-TSIAVFFIDLDR 1142 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K++ND LG GD +L +T R+ L+ D +AR+ G+ F ++L S N ++ A Sbjct: 1143 FKQVNDSLGHDFGDLLLREITNRLQSTLRIDDTVARIGGDEFVVLLESFANENQLGRIAE 1202 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + +I ++L ++V AS+G A + + I S E+L++A++AMYHAK G ++ + + Sbjct: 1203 KVIDTIGQSVDLDGNLVSVGASVGIALYPNDGINSDELLRHADVAMYHAKQAGKSNFKFY 1262 Query: 696 RVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + L LAV+N+E Y PII + VG+E L++W G + Sbjct: 1263 TAQMNVEAMERLSQESALKLAVKNNEFINHYQPIINAYTGKAVGVEMLMRWQTST-GLVP 1321 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 S+F+ ++EEL +I + LER+ +D+ W P ++ IN++ + ++ ++ Sbjct: 1322 PSDFIPLSEELNLIITMTEMALERVCKDLKEWH--TIRPEFYVSINLSVQHFVEADIVSF 1379 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + L+++ + +++ +ES ++ PE + + +L +G++L LDDFGT S LSYL Sbjct: 1380 ISELLARYQLPAAILRVEVTESSLILQPENAITTMRKLSSLGLTLALDDFGTGFSSLSYL 1439 Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + S + G E AI+ + + +AK + IA+ + L Sbjct: 1440 KKLPLDIIKIDRSFVAGIGINEADEAIVDTTLVLAKRLNMHCIAEGVETVEQFNYLVAKQ 1499 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C Y+Q + P I+K L Sbjct: 1500 CHYLQGYLYSKPSSAEKIMKNL 1521 Score = 96.6 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 6/177 (3%) Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF--SQGIFSDGERQSLAVLGSGDI 417 L+ + L+++++ + + + + R LA+ GS Sbjct: 803 GFAPWRSPLAILLYSIALMLMMVTWYRYRKTQQQLLLDVHEQVKYRENRLQLALTGSNSE 862 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YR 475 VWDW D + I+ LG ++ + + IH D DNF F+ Sbjct: 863 VWDWQADEDLIF-GKRISLDLGYREKALFYSLEEHVALIHPEDHDNFIHCWQLFISSANL 921 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILC 531 + +R++ +D Q+ W + + ++N +R G +ITE + + E Sbjct: 922 KDNFSCTYRLKTSDGQWFWYKDLGKIVAVDANNHPVRVTGSYTNITESRANEERAQY 978 >gi|95928959|ref|ZP_01311704.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans DSM 684] gi|95134860|gb|EAT16514.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans DSM 684] Length = 777 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 163/744 (21%), Positives = 323/744 (43%), Gaps = 33/744 (4%) Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285 W++L + ++ + + +L L ++ +R + +I Sbjct: 33 WLLLIFAAVGSALIIAAIPF-GADLNATHVAVLCLGLIVLTLYNCGLHLLSRTNRHPLWI 91 Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345 + +L ++ S I L T+ + + R V++I + Sbjct: 92 DRGQLTADTVLVSTLIFFSGAEHSWLWPLYVVIALEATFLL------RHPREVVVISSLG 145 Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI----------GFTVIQHVL--AT 393 I + ++ +G I ++ T+I A Sbjct: 146 AALFAAILCAGSYGNVPQFNLHLLDNIGPQHTIDRVLLWLWACFLGCSATLIGSSFNSAL 205 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 SQ S + + + D+++ +D L + + GP + Sbjct: 206 TNESQETLSRENQLQRFMESAQDLIFAFDADNRIHYLNGAARQRLDV---DISGPALHVD 262 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + ++ + + + + + FR+R+A + RI ++ G IL + Sbjct: 263 QILDESELPRWNS--KTCLLTVGTPFEPTSFRLRSAAGHELPVDCRISTAADG-GTILHW 319 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + D++ Q ++ + + + D LTG+ NRQ F ++ T + L+ + V +I Sbjct: 320 V-VCRDLSTQLENEKRLYNLSNFDQLTGLTNRQEFSEQATNAMRLTKRLQQ-QMAVALIS 377 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 ID K IN+ L VGD +L + R+ + ++ D++ RLSGN+F + + ++ I Sbjct: 378 IDHLKVINETLTSEVGDSLLREFSVRLSQGVRETDLVGRLSGNQFAVAFTNIDDIQSIEQ 437 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 +RK ++ P+ + ++E+ VT+S G + + ++ +LK A A Y+ + GGN Sbjct: 438 VMTKLRKKLSQPMTIGDQEMFVTSSAGLSIYPGDALSVEALLKKANSARYYVRAHGGNKH 497 Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + + ++ L A+ EL L Y P + L + E +E L++W HP G Sbjct: 498 QFYAPEMDEDIKNRLEMINGLHNALVRDELQLSYQPKVNLAEGEFHSVEVLLRWSHPTLG 557 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 +S S+F+ +AEE MI + L++L + + +W+ Q PPI + +N++ L ++ Sbjct: 558 QVSPSDFIPMAEESGMIGELTLWVLRQACLQVHAWQKQGL-PPIRVAVNVSGHQLQSSDF 616 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + L+++T P +++ +ESV+M +P + L +LRK+GI L +DDFGT S L Sbjct: 617 ITALTDLLNETGLDPQWLEIEITESVLMQSPTAAIATLNKLRKLGIHLAIDDFGTGYSSL 676 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 +YL P ++K + S + +E+ I SII M K++ T+IA+ + + L Sbjct: 677 AYLKRFPVHSLKIDRSFIKDIEQSERYATITSSIIEMGKSLHLTVIAEGVETLGQMAFLK 736 Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952 CD IQ + P+ + I++L Sbjct: 737 EQNCDEIQGFLYSMPVNADEIVRL 760 >gi|288555262|ref|YP_003427197.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Bacillus pseudofirmus OF4] gi|288546422|gb|ADC50305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus pseudofirmus OF4] Length = 656 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 127/560 (22%), Positives = 246/560 (43%), Gaps = 17/560 (3%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 E+ V + D ++ + A + G + + I D Sbjct: 105 EEQLEQLVNTRFEGTLIHD-QGKIISVDEESAVLFGYTRKELIH--LSVFELISPEDWIK 161 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + + + +E R D + ++ RP + +ITE+K Sbjct: 162 AQDAIVNGLIEP-----FELRALHKDGTTIHIEVQGRPYPYKKKKVRLV--SIRNITERK 214 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 K E I A+ D +TG+ NR++F +R+ L+ +D++ V I +++ K +ND + Sbjct: 215 KQEEQITYLAYHDEVTGLLNRRAFQERMKEQLNALKSDES--VVVATIGLNRLKTVNDAM 272 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 GI G+ ++ ++ + E LARL + F + I N + F + + Sbjct: 273 GIEAGNRLVKEVSHLLNEKCLPRIHLARLGSDEFILSFIESNPQDAVIPFINNILECFNE 332 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P+ L E V S+G + +++ I +E+++ AE+A++ K ++ + Sbjct: 333 PLQLDEFYFHVNLSVGLSISSNALIDVNELIRQAEVALHTIKDSTHGSIQFYEKEMSTGS 392 Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + + +L A+ +E LV+HP L ++ G+EAL++W G +S EF+ +A Sbjct: 393 IREMIIENELRHAIAKNEFTLVFHPQACLESGDLSGVEALLRWKSSALGMVSPFEFIEVA 452 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I +++E+ + + P+ + +N++ + L E + + + Sbjct: 453 EKTGLIIPIGKWVIEQACHYALQLERELGR-PVKMAVNLSPVQFVQPNLVEIITNALEEA 511 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + S ++L +ESV M + L LR++G+ +++DDFGT S L YL P D + Sbjct: 512 GLNASSLELEITESVAMEDEAHVMEKLTALRELGVHVSIDDFGTGYSSLQYLSQYPIDKL 571 Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 K + S + T I++SI+ M N+ +IA+ + + L + CD +Q Sbjct: 572 KIDKSFLRVQTNTNQTIIKSIVSMGHNMGMKVIAEGVESYDHVALLRSLDCDEMQGFVWT 631 Query: 942 SPLGFNSILKLLKE--RFPL 959 PL F ++ L RFPL Sbjct: 632 KPLPFTELITKLTSEGRFPL 651 >gi|56479052|ref|YP_160641.1| complex sensory protein [Aromatoleum aromaticum EbN1] gi|56315095|emb|CAI09740.1| Complex sensory protein with histidine kinase domain [Aromatoleum aromaticum EbN1] Length = 1246 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 153/577 (26%), Positives = 280/577 (48%), Gaps = 11/577 (1%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGS--GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 L + ++ + ++ A+ S G +++ + V+ P + +LG+ + Sbjct: 537 ALRRRTAQEKAEAEVQLRNRAIEASHNGLVIYRYAPPAGIVSANPALLRLLGMDEEQLIA 596 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L + +N LD V R+ + + A W+ + + + Sbjct: 597 MDLPTLARQGFD--ENGWEQLDGLVTARQAG-EVPLSLVRASGDVCWLDTSVTLVGDDVA 653 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 I + D+TE+ + E + A D+LTG+PNR DRL L L+A + +LR Sbjct: 654 GIDHAVIEFRDVTERHRYQEQLAYQANHDSLTGLPNRNLLGDRLQQSLALAACNSSLRF- 712 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ +DID+++ ++D G + + LV L++R+ I+AR++ + F +I + Sbjct: 713 VLWVDIDRFQVVHDSFGNEIANATLVVLSQRLAGAATGCSIVARVASDEFVLITEELPSQ 772 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + ++ PI+ E+ +T SIG A+ + + +L+NA +A++ AK Sbjct: 773 QAVVSLATRLLDALRAPISAGGEELWLTGSIGVAAMGGADLDVDTLLRNANVALFRAKEM 832 Query: 688 GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + + + + R+ ++ L A+E EL+L Y P + L+ E+VG EAL +W Sbjct: 833 GRDTFCFYETGLNVRTAPRLRLELALRRAIEQDELFLAYQPKVDLLTGEVVGSEALCRWR 892 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G +S EF+ IAEE +I I ++LE W D + +N++ Sbjct: 893 HPELGLVSPGEFIPIAEESGLILPIGRWVLETACAQARRWIDDGIDYR-RVAVNVSPLQF 951 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 ++L + AL+S+ P+ + L +ES +MGNP R+ +++ +L+ IG+ L +DDFGT Sbjct: 952 FRDDLVADVAALLSRYRLEPASLMLEITESAIMGNPARAIVMMQQLKAIGVKLAIDDFGT 1011 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LS L P D +K + + +T T AI SII +A ++ +IA+ + E Sbjct: 1012 GYSSLSALKRFPIDYLKIDRAFVTDITTNASDAAIAVSIISLAHSLNLRVIAEGVETEGQ 1071 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 + L GCD +Q H + P+ ++ L+++R LV Sbjct: 1072 VLYLRGRGCDEMQGYHFSPPVAPEALATLIRDRQQLV 1108 >gi|159036957|ref|YP_001536210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Salinispora arenicola CNS-205] gi|157915792|gb|ABV97219.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Salinispora arenicola CNS-205] Length = 720 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 138/577 (23%), Positives = 255/577 (44%), Gaps = 16/577 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A Q + R G+ + + + A +LG + + N Sbjct: 146 ARDEVEQALRDSEARFRAVFSGAAIGIGIGLVDGQIIDVNQAFADMLGYSIEEL--RQIN 203 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 H +D + V + + E R D W + + + + +G Sbjct: 204 VASLFHPDDAAGMWELYQELVEGKHESARLEKRYYRKDGSAVWTDLAVSLVRHDDGRPRF 263 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + DITE+ + + + A D LTG+PNR F + L I D + D R V + Sbjct: 264 TVAVVEDITERYELQQRLRFEALHDPLTGLPNRTLFFETLGVIFDNA--DAGRRIGVCFL 321 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKI 630 D+D +K +ND LG +GD +LV + R+ + + ++AR+ G+ F I++ + + Sbjct: 322 DLDGFKAVNDSLGHDLGDQLLVVIADRLADCVAGFGHLVARMGGDEFVILVDEGESLDDV 381 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A +++ PI + + ++ V+ASIG + I SE++K A+ +Y AK G Sbjct: 382 VGVADAALAAVSAPIRIGDHQLVVSASIGIVECPADTIDPSELMKAADTTLYWAKAEGRG 441 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + L A+E E L Y PI+ L D +V +EAL++W HP+ Sbjct: 442 RWAVWDRERSAQEIARSALAAGLPAALERGEFVLHYQPIVSLRDGSMVAVEALVRWQHPE 501 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S F+ +AEE +I + ++L + RD +WR + + + +N+A++ + D Sbjct: 502 LGLLSPVRFIGLAEETGLIVQLGAWVLRQACRDAGAWRREFPDTRLVVSVNLAARQVDDP 561 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + + ++ + ++L +ES VMG L RL +G+ L +DDFGT S Sbjct: 562 IIVDTVADTLADSGLPADLLQLELTESAVMGTAGEPLRSLHRLAGLGVRLAIDDFGTGYS 621 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTE---------KRIAILRSIIPMAKNIETTIIAKDIY 919 L+YL +P +K G + G E + I+ +++ +A+ +E ++ A+ + Sbjct: 622 NLAYLRRLPIRCLKLAGPFVEGLREGTPEMTTCHRDEQIVDALVRLARALELSVTAEAVE 681 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + + L + CD Q P I L+ + Sbjct: 682 TGVQAERLRALRCDTGQGYWFGVPGPVGEITARLRRQ 718 >gi|209525497|ref|ZP_03274036.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209493996|gb|EDZ94312.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 598 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 133/439 (30%), Positives = 229/439 (52%), Gaps = 5/439 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E + + + AF+D LT +PNR FL+RL +D+ N + V+++D D++K IN Sbjct: 155 ELEIANSKLRDMAFRDELTNLPNRALFLERLADGIDIKQQYPNYQFVVLLLDCDRFKMIN 214 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 + LG +VGD +LV++++R+ LLK D LARL G+ F I++ + + A + S Sbjct: 215 ESLGHSVGDQLLVAISKRLKSLLKPEDTLARLGGDEFAIMVNKIEDMAEAKTIAQKVIDS 274 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P L +E+ + SIG + +L++A+ AMY AK G F S Sbjct: 275 FSHPFVLPNQEVFINVSIGISLSHLDYQKPEHILRDADTAMYRAKDLGKGQYHIFDPSMH 334 Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 +++ ++ DL A+ N+E + Y PII L +I G EALI+W HP I F+ Sbjct: 335 HHVSEKLQLENDLRRAITNNEFLVYYQPIIHLKTGKIAGFEALIRWQHPTKKLIPPVLFI 394 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQAL 817 IAEE +I AI +L+ SW++ + +FI +N++++ + EL + +Q + Sbjct: 395 PIAEETGLINAIGYLVLKSACEQFRSWQENKLINDSMFISVNVSARQFANMELSQQIQQI 454 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + T P +KL +ES +M NP+ + +L + + L++DDFGT S LSYL Sbjct: 455 LEATKLDPHCLKLEITESAIMDNPKTAVAILEGFKSQNVRLSIDDFGTGYSSLSYLHNFQ 514 Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S + + ++ I+ +AK ++ +IA+ + + L + C++ Sbjct: 515 VDTLKIDKSFVQRMDNNGSSCGLVPVIVNIAKTMKMGVIAEGVETPEQLSLLRSLECEFA 574 Query: 936 QDSHVASPLGFNSILKLLK 954 Q + PL +S+L L+ Sbjct: 575 QGYLFSPPLPESSLLDLIS 593 >gi|332305295|ref|YP_004433146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172624|gb|AEE21878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Glaciecola agarilytica 4H-3-7+YE-5] Length = 684 Score = 485 bits (1248), Expect = e-134, Method: Composition-based stats. Identities = 135/575 (23%), Positives = 262/575 (45%), Gaps = 19/575 (3%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHG 447 ++ + D+ D + D + Sbjct: 122 NLAEVRQAQAQAQFKDNMLEAVFEATPDVFLLIDENGTIIDYHAGDNEDFYVFPKDCIGQ 181 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + + T+ ++ + G +E+ V A + R+ ++ Sbjct: 182 SVSSLF----PEPVARKFTVHNAIAFTKGGISTFEYEVELASGT-RYFEARLSHLNAYK- 235 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + + I DITEQ K+ E I +A+ D+LT +PNR LDRL+ +L + + Sbjct: 236 ---QVVVIIRDITEQHKAAESIRQHAYFDSLTSLPNRFLSLDRLSQMLKEAQRS-KEKVA 291 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +D+D +KK+ND LG VGD +L + ++ L+ D + RL G+ F ++L S Sbjct: 292 LLFLDLDDFKKVNDSLGHEVGDKLLKEVANKLTLALRKADTVGRLGGDEFIVLLRSLTGD 351 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 D A + + P + +E+ +T SIG ++T + ++S++L++A+ AMY +K Sbjct: 352 SDAIDIAENLLEIFREPFEIDGKELVLTLSIGIVTYTKNGDSASDLLRHADAAMYQSKLS 411 Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N F + +E L A++ E + Y P + ++++G EAL++W Sbjct: 412 GRNTYSFFTKEMSDVMLRRLEIEEQLNHALQREEFEVYYQPKFDVKSKKMIGAEALLRWR 471 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 +P GN++ EF+ IAE MI I +++++ + +W + I +N++ + Sbjct: 472 NPLLGNVTPDEFIPIAEHTGMIVPIGKYVVKQSLAFLNNWN-TTHQQTYTIAVNLSPRQF 530 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D L ++ + +P ++ +E V+M L L ++G+ L++DDFGT Sbjct: 531 RDKTLIGFIEQTLHDENIAPKSLEFEITEGVLMAGNSYIDDALQNLHQLGVKLSMDDFGT 590 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL FD +K + S ++G TEK+ ++++ I MA +++ +++A+ + Sbjct: 591 GYSSLSYLRQYSFDVLKIDRSFISGITEKKEDLDLVKATIAMAHSLDLSVVAEGVETHEQ 650 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + L +GCD +Q + + P+ + L R+P Sbjct: 651 LFLLDGLGCDLVQGYYFSKPIPAENALDF---RYP 682 Score = 40.7 bits (94), Expect = 1.3, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 30/112 (26%), Gaps = 4/112 (3%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRL 479 +D R+ + + G G I + R+ ++ Sbjct: 27 YDEERNVIYWNLGSELLYGYTEEEALGQKLE--DLIFPDFMREPVIAAHSDWINKGIKIP 84 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 E +R + + +N + Y I ++ E +++ Sbjct: 85 AEELTLRHKNGSDVSVFSSHVLFTNEHNKHEMY-CIDINLAEVRQAQAQAQF 135 >gi|17228670|ref|NP_485218.1| hypothetical protein all1175 [Nostoc sp. PCC 7120] gi|17130522|dbj|BAB73132.1| all1175 [Nostoc sp. PCC 7120] Length = 880 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 119/438 (27%), Positives = 233/438 (53%), Gaps = 6/438 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++++ E I A D LTG+PNR F + L L ++ VM +D+D++K IN Sbjct: 437 QRQQVEEKIRYQALHDLLTGLPNRLLFNELLAKALANASRSQE-SLAVMFLDLDRFKVIN 495 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L S+ +R+ + L+ D ++R G+ F I+L + ++ A + K+ Sbjct: 496 DTLGHTLGDRLLQSVAQRLRDCLRSGDTVSRWGGDEFTILLPHISYIEEVTQAACRILKA 555 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698 + +L E+ V+AS+G A + ++K+A+ A+YHAK G N+ + + S Sbjct: 556 LEEVFHLDGHELYVSASLGIALLDHHSPDAEALIKHADAALYHAKDEGRNNYQFYTTSLS 615 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + +++ L A+E EL + Y P + ++ +I G+EAL++W HP+ G ++ S F+ Sbjct: 616 GKTPELLTLEKSLRYALEKQELKVYYQPRVNILTGQITGMEALLRWQHPEMGIVAPSIFI 675 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAEE +I I ++L +W++ PP+ + +N++ K L E + A++ Sbjct: 676 PIAEETGLIIPIGEWVLRTACMQNRAWQEAGL-PPVQMAVNLSPKQFRQPTLLELVSAIL 734 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 ++T +P ++L +ES + + + +R +L L+++G+ + +DDFGT S LS L +P Sbjct: 735 AETGLAPEFLELEITESTAIEDIDFTRSVLENLQQMGVDIAIDDFGTGHSSLSRLQLLPL 794 Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K +GS + T I+++I+ + +++ + A+ + + ++ L + C +Q Sbjct: 795 HNLKIDGSFIKALTTDSKVAHIVKAIVTLGRSLGLRLTAEGVEKQEELDFLKSINCQDVQ 854 Query: 937 DSHVASPLGFNSILKLLK 954 PL ++L+ Sbjct: 855 GFLFHKPLSAEKATEILQ 872 >gi|254785359|ref|YP_003072788.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901] gi|237685923|gb|ACR13187.1| GGDEF domain protein [Teredinibacter turnerae T7901] Length = 811 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 130/592 (21%), Positives = 267/592 (45%), Gaps = 13/592 (2%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 LV + V + + E + V + + + Sbjct: 218 LVNSGNQLLDAVDLALAKRRAVEVVLRKSEEHVRQIIDSLPVWVGARNKDGHYIFANKAL 277 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 A L + +M G + + D + + + R +E + A + H Sbjct: 278 ADFLNTSPEAMRGSHISDFASYFLTDPAEVIALDNEVISTRLSAQIWEEKWLNAGGEEHS 337 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 M + PM + + + +DITE KK+ + A+ D LT +PNR ++RL Sbjct: 338 MHTHVMPMEFYDEVVALVVS--SDITELKKAQAQMEHMAYHDALTDLPNRSYLVERLEEE 395 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + S N ++ ID+D++K IND LG GD VL + +R+ + D++ RL G Sbjct: 396 IRKSDR-QNFFGALLFIDLDQFKYINDSLGHPAGDGVLKHVAQRLMAIASENDVVVRLGG 454 Query: 615 NRFGIILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 + F ++L + LK + A +R ++ P + E+ VT S+G + + Sbjct: 455 DEFVVVLTNLGEDISGAILKAEEIAERIRSHVSEPHYYHDLELHVTCSVGIVIYPDEEAG 514 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727 E+L+ A+ AMY K +G + ++ F ++ + ++++ DL A+E L + P Sbjct: 515 VHELLRFADTAMYQVKEQGRDAIQFFNKYMADKARNVLVMEGDLHRALEMEAFSLQFQPR 574 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + ++ EIVG EAL++W+HP+ G +S + F+ + E +I + ++++ER + + W+ Sbjct: 575 VNVLTGEIVGAEALLRWNHPERGAVSPAVFIPVLETSGLIVDVGMWVIERSLQQVKEWQR 634 Query: 788 QAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 + + +NI+ + ++ + ++ + +S +++ +E +V+ N E + Sbjct: 635 MGLWTRNMRLGVNISPRQFRSSQFVDDVKRALRDIEFSAEMLEMEITEGIVIHNLEETIN 694 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 + L+ GI+ LDDFGT S +SYL +P +K + S + ++ +I Sbjct: 695 TMTTLQTQGINFALDDFGTGYSSISYLKKLPVSILKIDQSFVRDITVDRNDRVLVETISA 754 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 M + ++A+ + + ++ +++ GC Y Q + P+ N+ +L+++ Sbjct: 755 MGNMLGLEVVAEGVETQDQLELISQYGCRYYQGYLASRPVDPNAFELMLEKK 806 >gi|148259976|ref|YP_001234103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidiphilium cryptum JF-5] gi|326403069|ref|YP_004283150.1| putative signaling protein [Acidiphilium multivorum AIU301] gi|146401657|gb|ABQ30184.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5] gi|325049930|dbj|BAJ80268.1| putative signaling protein [Acidiphilium multivorum AIU301] Length = 627 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 130/553 (23%), Positives = 251/553 (45%), Gaps = 13/553 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 E + W + + + D+ + G + DR Sbjct: 65 EALEDLRTIHRIARIGNWRVRLDDHLTSWSEDMHELFGTDPDRFVPLFDVLTGQMDETDR 124 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 F + + E R+R A+ W I +RP ++ G I+ GI +IT Sbjct: 125 TAFLATFRTVAETGQAA-AAEIRIRGAEEGARRWFWIDMRPETDDTGAIVAVRGICQEIT 183 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++K +LE I + D LT + NR L+RL IL + ++ DID +K IN Sbjct: 184 DRKVALERIRYMSSHDPLTNLINRTHLLERLDQILGEARRR-RENVALLTFDIDDFKGIN 242 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D+ G AV D VL + RI ++ D++AR+ G+ F ++ + A + ++ Sbjct: 243 DLFGHAVADSVLREIAGRIARQVRESDLVARIGGDEFVVVQAGCEQPELVETLARRLLRT 302 Query: 641 IAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 IA PI L REI ++AS+G A +T +L ++ A++ K N + + S Sbjct: 303 IADPIVLADGREIGISASVGIALHPFDGMTPGALLAHSSQALHVIKKERPNTLGFYDASV 362 Query: 700 FRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + +++DL LA+++ EL LVY P+ + G EAL++W+ P G ++ F Sbjct: 363 QSEWQKRRALEQDLRLALQHRELSLVYQPMFCMRSSLCSGFEALLRWNSPTHGPVAPDLF 422 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE + +++ + ++L + W P+ + +N++ + +L + Sbjct: 423 IGLAESIGLMEEVGTWVLREACAEAARWA-----VPLTVAVNVSPIQIQQGDLASVITET 477 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++ T +R+++ +ES+++ N +R+ L R++ +G+ +++DDFGT S L+ L P Sbjct: 478 LNTTGLPANRLEIEVTESMLIRNFDRAVDTLQRIKALGVGISIDDFGTGYSSLATLRAFP 537 Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 F+ +K + S + E+ AI+ +++ + + + ++ + + E L G D I Sbjct: 538 FNKLKIDRSFVRDLAEESESLAIVNAVLGLGRGLRLPVVVEGVETERQADILRDCGADAI 597 Query: 936 QDSHVASPLGFNS 948 Q P ++ Sbjct: 598 QGYLFGRPSPISA 610 >gi|302186419|ref|ZP_07263092.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 897 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 151/571 (26%), Positives = 271/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F +++ + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ LK R+P + Sbjct: 868 DVGQGYLFDRPIPGEELIEKLK-RYPRRPSA 897 >gi|330809082|ref|YP_004353544.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377190|gb|AEA68540.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1007 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 125/439 (28%), Positives = 234/439 (53%), Gaps = 7/439 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E++ + + I D LTG+PNR DRL + + + L TV+ +D+DK+K +N Sbjct: 538 ERQLTEKRIRFMGDHDALTGLPNRTLLEDRLKQAMLYAQRYNRL-VTVVFLDLDKFKLVN 596 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639 D LG + GD++L ++ +R+ ++ D + RL G+ F IIL + ++ + +++ Sbjct: 597 DSLGHSAGDELLKTVAQRLLGCVRRTDTVVRLGGDEFVIILFDQPSDLDGVTPVLHKIQE 656 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697 +I PI L + VT S+G A++ + + +L NA+ AMY AK G N + + + Sbjct: 657 AILRPIQLGGHTLHVTCSMGLATYPADGSDTDTLLSNADAAMYRAKELGRNSFQFYTSEM 716 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 ++ ++ +++ L A+ N E L+Y P + L +I+G+EALI+W HP+ G +S +F Sbjct: 717 NNKVQGKLAMQDGLRSALYNDEFLLLYQPQVDLQSGQIIGVEALIRWQHPELGMVSPIKF 776 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + AEE +I I +++ R +W++ PPI + +NI+++ ++ +L + + Sbjct: 777 IPQAEETGLIVPIGDWVIHTACRQNKAWQNA-GWPPITMSVNISARQFIERDLIDRVMHA 835 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T P ++L +ES++M + +++ + L+ +GISL++DDFGT S L+ L P Sbjct: 836 LQETGLDPMYLELELTESLIMQDLQQAISKMKALQAMGISLSIDDFGTGYSSLAALKSFP 895 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S + E AI ++I + + +IA+ + E L GCD I Sbjct: 896 IARLKIDQSFVRDLPDNENDKAIATAVISLGHKLNLKVIAEGVETEEQQTFLRDNGCDEI 955 Query: 936 QDSHVASPLGFNSILKLLK 954 Q + + I +LL+ Sbjct: 956 QGHFFSKAVSAEEISRLLR 974 >gi|117620983|ref|YP_856226.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562390|gb|ABK39338.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 992 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 143/637 (22%), Positives = 283/637 (44%), Gaps = 22/637 (3%) Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI--VILIGFTVIQHVLAT 393 + +L + + + + + I Q L+ L + L+ QH A Sbjct: 365 PLRYPQASQLLALNSPVYVGIPLHGQHGAPIGQLTLLLDTPLADPMPLLDALSSQHERAA 424 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + R + + D + D + I G A M G L Sbjct: 425 VELQRLAADEALRLAEVAFNTHDGLLVMDHKGIILKVNNSFTRITGFADDEMIGQHIVRL 484 Query: 454 PYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + D + R + + + E R D + + + + + +G+I Sbjct: 485 RPTYYGDHLKQDVRQAVAA-----QEFWMGEERCLHKDGHLFPVRLMVSGVQDEHGEISH 539 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ DI+++K++ I A+ D+L G+ NR+S D + L + ++++ Sbjct: 540 YVCSFYDISKEKEAARHIEQLAYYDDLCGLYNRRSLNDIMQRTLQEA---SGQWGALLLV 596 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-----SENN 626 D+D +K IND LG A GD +L ++ R+ L + +LAR+SG+ F ++ Sbjct: 597 DLDNFKSINDSLGHACGDLLLQAVVERLKGLPQDNLVLARISGDEFALLFSALGQGYVTA 656 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + FA + +P ++ + ++ +AS+G + ++S +++ A+ A + AK Sbjct: 657 KILAEHFARELMGLFRIPFDIEDHKLHCSASVGISLFSSEDKDHLVLMQQADTATHMAKR 716 Query: 687 RGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G + F + ++ + + L A+ + EL L Y P R+ + + G+EAL++W Sbjct: 717 SGQGNYVFFSEAMAEKEKSKLALNNQLRDALRHHELQLHYQPQYRVDNGALSGIEALLRW 776 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 + +EF+ IAEE +I+ I ++++ W ++ P + +N++++ Sbjct: 777 QRSDGSMVPPAEFIPIAEETSLIQDIGYWVMKTACAQYSFWLNRGLAIP-HLSVNVSARQ 835 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + ++ ++ T PSR+ L +ESVV+ N S + +L+++GI L++DDFG Sbjct: 836 FHTVGFVQQVEYILRDTGVPPSRLLLEVTESVVLENRLESIARMRQLKELGILLSIDDFG 895 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL +P D VK + S + +E+ AI+++I+ +AK T+ A+ + E Sbjct: 896 TGYSSLAYLRDLPADEVKLDRSFIQTLVHSEQDKAIVKAILELAKVFRFTVTAEGVEDEE 955 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + L +GC + Q + PL ++ LL P Sbjct: 956 QLAILKSLGCQHYQGFLTSRPLTAKALESLLGAAVPG 992 >gi|158426282|ref|YP_001527574.1| hypothetical protein AZC_4658 [Azorhizobium caulinodans ORS 571] gi|158333171|dbj|BAF90656.1| conserved putative membrane protein [Azorhizobium caulinodans ORS 571] Length = 861 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 133/599 (22%), Positives = 258/599 (43%), Gaps = 25/599 (4%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-------GIFSDGERQSLAVLGSGDIVW 419 A G LVL LI S+ + R + D +W Sbjct: 268 WLLACGGTLVLFTWLILARASASARQMEAASRVMQESRAALQLSEARFRDVAEAATDWIW 327 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + D + + G + + G + +H + + RR Sbjct: 328 ETDAALRITYLSERYEALTGRSGAELMGQPLD--TVLHS--IEGPLESWTARAAERRVT- 382 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 R A+D + + + +++G ++ + G A+DIT + ++ + A D LT Sbjct: 383 PLSCRYLASDGTLRLCRVAAKAVRDADGHLIGFRGTASDITAEVEAHRKMEHLALYDPLT 442 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 +PNR F++ L+ L L + I + ++I + G+A GD VL R+ Sbjct: 443 SLPNRTLFMEFLSGALSSIGDSQRLVAAL-RIGLANTRQITESYGLAAGDAVLAECALRL 501 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASI 658 +++ D++ARL F ++ + N L + D ++ ++ PI L I ++ +I Sbjct: 502 KQVITDSDLVARLGAEDFALVATAPGNVLAVKDLCARVQAALNAPIRLPEGDLIDLSCAI 561 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVE 716 G A + + +L++AE A+ HA+ + F + ++ DL V Sbjct: 562 GVALAPNDCMEGELLLRSAEFALQHAQGEEPPGIAFFSADMTEQVQAKRTLEHDLRRTVG 621 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 + + ++Y P +E V +EAL++W HP +G +S F+ +AE +I + ++L Sbjct: 622 SEDFVVLYQPRFSAATQEPVAVEALVRWLHPGFGLLSPDRFIPLAEASGLIVPLGEWVLR 681 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSES 835 R I W P + + +N++ +L E ++A + + P R++L +E+ Sbjct: 682 RACATIAKW------PDLVVSVNVSPVQFRQGEQLLETVRAALKDSGLPPERLELEITEN 735 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895 V++ N E++ +L ++ +G+ L +DDFGT S L+YL PFD +K + + + R Sbjct: 736 VLLENTEKALDVLVGIKTLGVRLAMDDFGTGYSSLNYLRNFPFDRIKIDRRFVGDLEQSR 795 Query: 896 IA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 A I+ +II + + + + A+ + L + GC+ +Q H A P+ ++ L Sbjct: 796 DAQGIVEAIIGLGRALNLQVTAEGVETAGQFAWLRKAGCEELQGFHFARPMSEADLIAL 854 >gi|258654169|ref|YP_003203325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nakamurella multipartita DSM 44233] gi|258557394|gb|ACV80336.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nakamurella multipartita DSM 44233] Length = 702 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 255/568 (44%), Gaps = 13/568 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A + R G+ + D+ + P + +LG M RN Sbjct: 131 AQDEAERAARELQARFRAVFSGAAVGIGVGDVDGRILDVNPALQKMLGYTVEEM--RRRN 188 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 +IH D + + + + R D W + + + ++ G Sbjct: 189 VGEFIHPADTADVWQLYQQLITGTIDTFRTAKRFVRQDGDTVWTQLAVSLIRDNRGRPEF 248 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 I + D+T+ ++ + A D LTG+ NR F RL + + TD R + ++ Sbjct: 249 QIAVMEDVTDLRRLQIRLEHQAHHDALTGLANRALFQQRLGEL--AATTDPTERIGLCLL 306 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKI 630 D+D +K IND +G VGD VLV + R+ + ++ARL G+ F I++ +++ + Sbjct: 307 DLDGFKAINDSVGHGVGDRVLVEIAARLGQTVDGDRQLVARLGGDEFVILVAGTSDAQDM 366 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A ++A P+++ VTAS G T++ +E+++ A++ +Y AK G Sbjct: 367 VAVAEAALAAVARPVSVAGGVFNVTASAGLVERTAAGADPAELVRAADITLYWAKAEGKA 426 Query: 691 HVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F D+ + + L A++ E L Y P+I L D G EAL++W+HP+ Sbjct: 427 RWAIFDPERSLREVDQYTLAQLLPTALDRGEFRLHYQPLIALADGRFTGFEALLRWEHPR 486 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G + F+ AEE +I I ++L+ R W + + P + +N+A + L D Sbjct: 487 LGRLRPDRFIAAAEESGIIVPIGQWVLQESCRQARRWYEITGIRPC-VSVNVALRQLSDG 545 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 L + + +I +P +++L +E V+G+ L L +G+ + +DDFGT S Sbjct: 546 GLLDDVLRVIEAEQLTPDQLQLELTERAVIGSDHEPLAELQALAALGVGIAIDDFGTGYS 605 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK-----RIAILRSIIPMAKNIETTIIAKDIYGEID 923 ++YL +P +K + S ++ I+RSI+ +A ++ T+ A+ + Sbjct: 606 NMTYLRRLPITALKLDQSFVSELRPDAADQTDAKIVRSILTLAHDLGLTVTAEGVETAAQ 665 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951 + L +GCD Q + +P+ +++L+ Sbjct: 666 ARALRELGCDQAQGMYFGAPVPADALLR 693 >gi|114321830|ref|YP_743513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114228224|gb|ABI58023.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 1023 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 134/554 (24%), Positives = 247/554 (44%), Gaps = 16/554 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH-INDRDNFRTI 467 + + + D + I G + G + H + Sbjct: 470 VFTSANEGILITDPQARILMVNQAFTRITGYHQDEVEGRDPKLLASGRHGPEFFQELWRV 529 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 LD Q E R + + +I I + + +G ++ Y+G+ +DIT+ K Sbjct: 530 LDEH-----DHWQGELWNRRKSGELYLQLITISAVRDESGRLINYVGLLSDITDMKAYQR 584 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + D LT +PNR LDRL + L+ + R V +D+D +K INDV G V Sbjct: 585 KLEFLTHYDPLTELPNRVLLLDRLRKAMQLAQREQR-RVCVAYVDLDDFKTINDVHGHRV 643 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD VL+ L R+ + D +RLSG+ F ++ ++ + + A + ++A PI + Sbjct: 644 GDQVLLELASRLSAARREGDTASRLSGDEFAMVFVNLGSVAECHRMAARVLDAVARPITI 703 Query: 648 LEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 + +ASIG A + + + ++L+ A+ AMY AK +G N F V+ R R Sbjct: 704 EGVALQTSASIGVAHYPQDEEVDAEQLLRQADQAMYQAKLQGKNRHHVFDVAGDRQLRDQ 763 Query: 707 IKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + L LA+ E L Y P + L E+VG EALI+W HP+ G + + F+ Sbjct: 764 HESLTRLELALARGEFVLHYQPKVNLRTREVVGAEALIRWQHPERGLLPPAAFLDDLNGQ 823 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LY 823 + A++ +++ R + +W +Q + + +N+ + L + + ++ L+++ Sbjct: 824 PLEVAVSRWVMARALEQVETWSEQG--VHLPVSVNVPALHLQQADFVDQIRELLARHPGL 881 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 + ++L ES + + + ++ +G+ +LDDFGT + LSYL IP VK Sbjct: 882 PRNSLELEILESSALASLDHVSRVIQGCAALGVDFSLDDFGTGYASLSYLKRIPVRIVKI 941 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + +A+L I+ + + + +IA+ + + L +GC+ Q + Sbjct: 942 DRSFVRDMLEDADDLALLEGIVRLTQVFDLQLIAEGVETPEQGERLLELGCEQAQGYGIG 1001 Query: 942 SPLGFNSILKLLKE 955 P+ S+L+ L Sbjct: 1002 RPMPAGSLLEWLSA 1015 Score = 61.5 bits (148), Expect = 8e-07, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 10/226 (4%) Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI------WFIGLWMA 357 P +A + I+ + I G W + + + ++ Sbjct: 233 PPPSAEVLAISDKLGGMRGVRATIDAGAADVVPLDFAGQTWAAVLLPIHDPAGELVAYVV 292 Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417 + L+ L+ V+ +L + + + + Q D Sbjct: 293 SFAPDPFSRMFRWDFIRAALVATLLLGAVLMLLLRVLHSREVLRGERAYQQAITDTMADG 352 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--RDNFRTILDSFVGYR 475 ++ D P +LG + G + L + H +D + + L+ V Sbjct: 353 LYAQDKKGRLTFINPVGRDLLGYREEDVLGRRAHALFHQHDDDGLAGSGQCPLERRVAAG 412 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 R + E R D + + RP+ G + + DITE Sbjct: 413 R-YFEGEETFRRRDGSEIPVEVSSRPLY-QGGHWAGSVTLFRDITE 456 >gi|148359051|ref|YP_001250258.1| GGDEF/EAL domain-containing sensory box protein [Legionella pneumophila str. Corby] gi|296107100|ref|YP_003618800.1| sensory box protein/GGDEF domain protein/EAL domain protein [Legionella pneumophila 2300/99 Alcoy] gi|148280824|gb|ABQ54912.1| sensory box protein/GGDEF domain protein/EAL domain protein [Legionella pneumophila str. Corby] gi|295649001|gb|ADG24848.1| sensory box protein/GGDEF domain protein/EAL domain protein [Legionella pneumophila 2300/99 Alcoy] Length = 840 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 148/809 (18%), Positives = 320/809 (39%), Gaps = 69/809 (8%) Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252 I+ A + ++ + ++ GF ++++ G I Sbjct: 54 AIVYNTALCFIVLSLAILFSLNC---YYKSSLILGITVFVFSGLGFSQHILDVNLGIDEI 110 Query: 253 WRACSEI--------ALSSSLIIFLFMY-------LHWNRWHAKVGYITFSGIACIAILF 297 + +++ FL + L R + + Sbjct: 111 FFHHYHAFKNAYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGALGFLVFCLAIL 170 Query: 298 CMSFY-------------YPMVTASIARITLASIVLYYTYFIIYHGMKGYER-AVLLIPA 343 +S Y PM + + S Y+ + A+ + + Sbjct: 171 FISGYFSEIQHAYQWGVKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCS 230 Query: 344 WILIFIWFIGL--WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 + ++ + + + RL+ V G + + L G + LA + Sbjct: 231 FCIMLTFTLLSFEILEKENRLNLSFSIATFVIG-IFLSFLFGLVIRLWQLAKLSAIAAKY 289 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS------------GSMHGPI 449 + E + + D + D + + + ++ + Sbjct: 290 AFLE-VEATLESTADAILVVDKEGNVINYNQRFLDMWRQRINPPRIINYLDIKEEINKQL 348 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 N IH ++ + + + +E R++ ++ + + I Sbjct: 349 VNKREVIH---------RINQTIKHPDHQNSFELRLK---GNLYYDCYTQPLKLDED--I 394 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + + DIT K+ + + D LT +PN+ +D L + + +D + V Sbjct: 395 IGRVWSFRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLRYAMKGAISDKKI-VGVY 453 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++D+D++ +INDV G + GD+++ + +R+ + + IL R+SG++F I++ S + + Sbjct: 454 LLDLDRFTQINDVFGHSKGDEIIKIIAKRLKDCVPVEHILGRISGDQF-IVIASLDEIRE 512 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + + P+ + I ++ SIG + + T +L A++A+ K G Sbjct: 513 AVLGVTRLLAAFHEPVIMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKADIALSRTKIEGR 572 Query: 690 NHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N+ + + ++++ +L A+ E L Y PI+ L + G EALI+W+HP Sbjct: 573 NNFQFYTRDMNTYTLEHILLENELRNAIRKREFVLYYQPILELRSLNLNGFEALIRWNHP 632 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G + +F+ +AEE+ +I I ++L + + I +W+ Q + + +NI+ K L Sbjct: 633 RNGLLLPEKFIQLAEEIGIISEIGDWVLTTVCKQIKTWQKQGVN-NLKVAVNISPKHLKF 691 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L + ++S+ I+L +E++++ L L++IGI +++DDFGT Sbjct: 692 RHLPIRINEILSEFQVKSESIELELTENILIDKSSGIIDTLNELKEIGIKISIDDFGTGY 751 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL +P D +K + + + A++++II MAKN+ +IA+ I + ++ Sbjct: 752 SCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIAEGIENKYQLE 811 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLK 954 L +GC Y Q + P+ + ++ L+ Sbjct: 812 ILQNLGCHYGQGYYFYHPMPPDKCMQFLQ 840 >gi|296102518|ref|YP_003612664.1| hypothetical protein ECL_02167 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056977|gb|ADF61715.1| hypothetical protein ECL_02167 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 860 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 125/569 (21%), Positives = 270/569 (47%), Gaps = 21/569 (3%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 +++ + + +R + D W+ D+ + T+ G G Sbjct: 297 ENIFLLEQARLNLITSEKRFRDVSETTSDWFWETDLSLTITWLSGRFTTVTGYDESQWLG 356 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR---VRAADNQFHWMIIRIRPMSN 504 + L + +L++ V R ++EF+ A + + + + Sbjct: 357 RKLDALF-------PSTNGLLNTCVRRRELSGRFEFKNCPYTNAQRSTSYCTLLAKFSAQ 409 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G ++ G A+D++ + ++ + + + D LTG+PNR + LT L N Sbjct: 410 PDGTVV-LRGAASDVSLEVEATKRVEFLSRHDELTGLPNRYHIKEFLTGQLAKEDIH-NS 467 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 ++ +D+DK+K +ND+ G + GD +L + R+ + ++ D +AR G+ F ++L + Sbjct: 468 PFAMICLDLDKFKPVNDIFGHSTGDALLGEVALRLKQCVRRGDFVARQGGDEFMLLLDNT 527 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + I + + + + P + ++T+ S+G A +++++L+ A++A+Y A Sbjct: 528 RHLDHIEEVCHRIVQELNRPFTIDGNDVTIGVSMGIALAPQDSTSANDLLRYADIALYQA 587 Query: 685 KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N +R ++R ++ L A+ +LYLVY P L I +EAL+ Sbjct: 588 KQSGRNRWVYYRQDMSEKLTERRKLELALKTAIREDQLYLVYQPRYNLRHSRIDAVEALV 647 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ GN+ +F+ +AEE +I ++ +++ + + +P + + +NI++ Sbjct: 648 RWQHPERGNMMPDQFIPLAEETGLIINLSNWVIRKACTE-----THEKLPGLSVSVNISA 702 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++L E ++A++ +T P+R+++ +E+V + NPE++ + L+K+G+ + +DD Sbjct: 703 IEFQASDLAERIKAILDETGLEPTRLEIEVTENVTLSNPEKTLQTMMALKKMGVRILIDD 762 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT + LSYL FD +K + S + G + + +++ II + K + A+ + Sbjct: 763 FGTGYASLSYLRKFQFDGLKLDKSFIFSLGDSTQNQSVVEKIIDLGKAYSMEVTAEGVET 822 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + L + CD +Q + P + Sbjct: 823 VEQLSFLKKNKCDEVQGYLLGKPAAIADL 851 >gi|90425430|ref|YP_533800.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gi|90107444|gb|ABD89481.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 895 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 140/581 (24%), Positives = 262/581 (45%), Gaps = 21/581 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGL 440 + + + SQ + + + L V + + IL Sbjct: 313 FLIALFEDITERRSLSQELVNTKKFLELVVDNIPISLTVQSTQDGRYLFANRGAEAILNR 372 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G L + + D+ RR + E + D + R Sbjct: 373 CREDAVGLSA--LDIFNPKE-AKLIAERDANAIRRRDLMTEEHPISTKDG-LRLFLTRRV 428 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + G I DIT+++++ + A+ D LT +PNR +FL L +++ + Sbjct: 429 TVVDGEGAPQYLIKTHEDITDRRQTEAQMAHMAYHDGLTDLPNRLAFLQALAQMIE-ACR 487 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D V+ +D+D K+INDV G AVGD +LV + R I L +++RLSG+ FG+I Sbjct: 488 DTTEEFAVLSVDLDGLKEINDVFGHAVGDKLLVEVARCIQ-LSSRGGVVSRLSGDEFGLI 546 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + A + K++A + +++ + + G A + ++ ++ +L NA A Sbjct: 547 IDGPQ-PAAAMHLAAEVAKAVAGGFLIDGKQVRIGVTTGVAVFPANGADAASLLANAGAA 605 Query: 681 MYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE----E 734 ++ AK RG + + DR ++ +DL A++N E+ L Y P + Sbjct: 606 LFRAKARMRGSVSLYEPEMDRQIRDRRILHQDLSAAIKNGEMSLHYQPQANGCTRIGGDD 665 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 VG EAL +W HP G + S+F+ +AEE +I + ++L R+ SW P+ Sbjct: 666 FVGFEALARWFHPTRGFVPPSDFIPLAEESGLIVEMGEWILREACREAASWSK-----PL 720 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N++ L+++L + ++ +T PSR++L +E V++ + +R LL RL + Sbjct: 721 QIAVNLSPAQFLNSDLVSAVHTILLETGLKPSRLELEITEGVLIEDFDRGLSLLRRLTAL 780 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ +++DDFG+ S L+YL PFD +K + + + + AI+R++I + + + Sbjct: 781 GVRISMDDFGSGYSSLTYLQAFPFDKIKIDRAFVMNLGHNPQSAAIVRAVIGLGHGLGVS 840 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I+A+ + + + L GCD +Q + P +L+ Sbjct: 841 IVAEGVETQQQLDFLVAEGCDAVQGYFIGKPAPIEQYSRLV 881 Score = 39.9 bits (92), Expect = 2.1, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 48/206 (23%), Gaps = 29/206 (14%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNW 452 S+ + + + + V I + GL + G Sbjct: 198 RELSRQLATAKQFLESVIDNIPVCVAAKAIEDGRYILANRAFERFCGLPRDRILGRRTA- 256 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + L+ E V + + Sbjct: 257 -ELFSAATAATIGEADRMAIDSPHDPLRGELTV-DVGGGDRVIDNNCVVACDDKNRPEFL 314 Query: 513 IGIANDITEQKKSLEGILC------------------NAFQDNLTGIPNRQSFLDR-LTT 553 I + DITE++ + ++ + QD R F +R Sbjct: 315 IALFEDITERRSLSQELVNTKKFLELVVDNIPISLTVQSTQDG------RYLFANRGAEA 368 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKI 579 IL+ D + + + + K I Sbjct: 369 ILNRCREDAVGLSALDIFNPKEAKLI 394 >gi|330980029|gb|EGH78295.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 897 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 151/571 (26%), Positives = 271/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F +++ + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ LK R+P + Sbjct: 868 DVGQGYLFDRPIPGEELIEKLK-RYPRRPSA 897 >gi|254387213|ref|ZP_05002479.1| sensory box/GGDEF protein [Streptomyces sp. Mg1] gi|194346024|gb|EDX26990.1| sensory box/GGDEF protein [Streptomyces sp. Mg1] Length = 635 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 135/611 (22%), Positives = 264/611 (43%), Gaps = 27/611 (4%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVR 425 + G + T +H R A + + D Sbjct: 13 VSGTSEGTGSAADSIRSATTERHPAVPATAPSSRAESERRDYRAAFNAAHLAMAVVDRGG 72 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 V +A +LG ++ L + + R+ RL+ R+ Sbjct: 73 HVVAANDALAALLGTEPHALVEQHAADLVDLAAE--ARTWQAYQEVLRGRQARLRCTRRL 130 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 + D W + + P+ + + DI++++ + D +T +PNR Sbjct: 131 KHPDGHSLWTEVTLGPVPGT----SEVLLSVADISDRRDLQARLRHLQMHDPVTRLPNRT 186 Query: 546 SFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 F +RL+ L+ S R + +D+D +K +ND LG VGD +L ++ R+ + Sbjct: 187 LFFERLSAALEHSSYEQGGTGRIGLCYLDLDGFKAVNDTLGHRVGDRLLTAVAARLTQCA 246 Query: 604 KFPDI-------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 +ARL G+ F +++ + ++AD A + ++ P +L + ++V+A Sbjct: 247 DQSGYGRTGGHLVARLGGDEFALLVEDSTGTEQLADLARSALAAVQEPFDLAGQRLSVSA 306 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLA 714 SIG S+ +++ +++ A+ +Y AK G F + L A Sbjct: 307 SIGVVERASADTSATALMQAADTTLYWAKADGKARWTLFDPERNAHRMTRQALSSTLRPA 366 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 VE E L Y P++ L + G+EAL++W+HP++G ++ + F+ IAEE I + ++ Sbjct: 367 VERGEFALEYQPLVDLESGAVRGVEALVRWNHPQFGTLTPNRFIGIAEEDGSIVQLGRWV 426 Query: 775 LERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 L R W+ +Q + P+F+ +N+A + + D++L + ++++T +P ++L + Sbjct: 427 LRTACRQARRWQIEQPSDAPVFVSVNVAVRQVWDSDLVGDVAEILAETGLAPQLLQLELT 486 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--- 890 ES VMG+ R L L +G+ + +DDFGT S L+YL +P +K +GS + G Sbjct: 487 ESAVMGSAGRPLQALQALSDMGVRIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFRY 546 Query: 891 -----STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 I+ +++ +A + T+ A+ + L R+GCD Q + + Sbjct: 547 DDGAHPNPADETIVEALVQLAHRLGLTVTAECVETVGQAARLRRVGCDTGQGWLYSRAVA 606 Query: 946 FNSILKLLKER 956 + I +++ + Sbjct: 607 PDVIARMIGRQ 617 >gi|289523843|ref|ZP_06440697.1| sensory box protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502499|gb|EFD23663.1| sensory box protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 568 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 132/555 (23%), Positives = 243/555 (43%), Gaps = 14/555 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465 L V + V D + P TI G ++ G R H D ++ Sbjct: 17 LELIVNNIKEGVVVTDTGGTILWVNPAFTTITGYSAEEAIGQNPRILKSDYH--DHSFYK 74 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + DS + G + E R + + ++ I + + ++ I D+T+ K Sbjct: 75 NLWDSILT--DGFWEQEIWNRRKSGEVYPELLSIYALKDHRNITRYFVSIFTDLTDVKAK 132 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + + D LTG+ NR FL L + + + + + + ++D+D++K IN G Sbjct: 133 DRQLHNYLYVDPLTGLYNRNYFLKDLKSKVGDA-LNSTKQVGIFLMDLDRFKLINSTFGY 191 Query: 586 AVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD +L ++ RI D L RL + F ++ + + L+ + K + Sbjct: 192 LYGDHILQLVSERISSNKKHRNDTLYRLGEDEFA-LIATLEDPLEARRIGRDLIKVMQDY 250 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRS 702 + I V S+G SE+++ AE+A+ AK RGGN + Sbjct: 251 FASDKGPIYVRLSMGIVIAPVDGTKESELMRKAEIALNKAKSRGGNSFAFYDNYFEKQYR 310 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 R+ ++ L A+E E + + P I + + G EAL++W H +IS + F+ +AE Sbjct: 311 SRLSLENALLSALERKEFRMAFQPQIDVSTGRVFGAEALLRWRH-NGEDISPALFLPVAE 369 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E+ + I ++L+ + + W +Q + IN+++ D E + +IS Sbjct: 370 EISIAPDIGFWVLKECCQRMSEWTNQGIELE-KLSINVSASQCHDETFLERVFKIISDAD 428 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 +P RI L +ESV+M + + + L RL+ +GI + +DDFGT S LSYL P D +K Sbjct: 429 VNPERIMLEITESVLMEDRNKIKELFKRLKTLGIGVAIDDFGTGYSSLSYLKDFPVDILK 488 Query: 883 FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + + E+ I+R I + + + +IA+ + + ++ L +G Y+Q Sbjct: 489 IDKSFIDNVETDERDRVIVRGIAKVGEVMGMEVIAEGVERKEQLEILRNLGIRYVQGYLY 548 Query: 941 ASPLGFNSILKLLKE 955 + PL + ++ Sbjct: 549 SPPLEKDELIAFCTS 563 >gi|114319701|ref|YP_741384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114226095|gb|ABI55894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 693 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 131/587 (22%), Positives = 256/587 (43%), Gaps = 14/587 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 L +++ + + + Q E S + + + D + ++ Sbjct: 114 CLFSVLLSREQALRRERESLILQLQDELHAHEIASAVFNATSEGIMVTDAEQRIISVNRA 173 Query: 434 IATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 G G + L H D + + + + G + E R + + Sbjct: 174 FVNTTGYEPREALGQSPSILSSGRHSAD--FYADMWEQLREH--GTWEGEIWNRRKNGEV 229 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 + + + + + G I Y+G+ +DIT+ K+ + + A D+LTG+PNR FLDRL Sbjct: 230 YPEWLHVDAIRDEAGRITNYVGVFSDITKHKELHDRLHALANYDSLTGLPNRTLFLDRLR 289 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 I+ L+ +++ + +D++K+IND GD VLV + +R+ L+ D LAR+ Sbjct: 290 QIIALA-EHRGFSFSLLYLGLDRFKEINDTYSHTAGDQVLVEVGQRLQTCLREKDDLARM 348 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F I++ E L + A + +++ PI + + V+ASIG + + Sbjct: 349 GGDEFVILVEGE--ELNVHTVAQRLLRTLENPILIDQEPFFVSASIGICHYPDDGADTDT 406 Query: 673 MLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 ++ A+ A+Y AK +GG + S RV + DL A+E++ L L + P L Sbjct: 407 LMATAQSALYQAKAAGQGGFSLYSPDAHERARQRVRLVSDLREALEHNRLELAWQPQFGL 466 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 + + G EAL +W IS +EF+ +AE+ +I + ++++ + + Sbjct: 467 DNRRVTGFEALARWQRDDGRPISPAEFIPLAEQSGLIAQLGRWVIDTATAEAKALLQARP 526 Query: 791 MP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 +N++ L D+ L + + ++ +++ +ES + + ER L Sbjct: 527 ELEQARFALNLSPYQL-DDSLPKILTDGLAAAGLPAGALEVEITESALFADQERVTETLN 585 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 + G+ L +DDFGT S ++ L +P +K + SL+T I+R+++ MA+ Sbjct: 586 AIGSTGVRLAVDDFGTGYSNIARLKLLPIHRLKLDRSLITDLEHDHSDREIVRALLAMAE 645 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + ++A+ + + L + GC Q A P +L L+ Sbjct: 646 ALGLDVVAEGVETQAQATFLAQAGCPQAQGYLYARPQPLEPLLTWLR 692 >gi|311279469|ref|YP_003941700.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Enterobacter cloacae SCF1] gi|308748664|gb|ADO48416.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Enterobacter cloacae SCF1] Length = 570 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 128/559 (22%), Positives = 247/559 (44%), Gaps = 28/559 (5%) Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSF 471 + IV + + I + + G + H F + Sbjct: 16 NAHAIVAITNQKGVIIQVNDRFCEISQYSRDELCGNTHKLINSGYHP---PRFFKEFWNT 72 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + + R Q E RA D +W+ I P NG +YI I DIT+ K + Sbjct: 73 IAHGR-IWQGEVCNRAKDGSIYWVYSTIVPFLGDNGRPDKYIAIRADITKLKHVEQEAQR 131 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 + QD+LTG+ NR+ F +R + +M ID+D +K ND G GD + Sbjct: 132 LSRQDDLTGLYNRRMFAERFLEA-QRDSALSGQFCALMSIDLDGFKGFNDHFGHGHGDKL 190 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPIN 646 L+ L RR+ E + D +AR+ G+ F +IL + A + K++A P Sbjct: 191 LIELARRLTECTRKRDTVARMGGDEFLMILTDLGDNADTAIENAAKIGKRILKAMAAPYF 250 Query: 647 LLER---------EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 L + ++++ SIG + + IT E+L + A+Y AK+ G N + + Sbjct: 251 LPDSAHSPSRKQSRLSISGSIGGRIFFGNHITMDELLVQVDQALYQAKNNGKNQLVFYET 310 Query: 698 SSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + + ++ L A++ E+++ Y PI+ + I+G+EAL +W P+ G IS Sbjct: 311 DRAQHEAIRKNIALEISLRSALDRGEMFMQYQPIVD-RQQNILGMEALSRWRSPEHGLIS 369 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 ++F+ +AE +I +I ++ LE + + +W A + +N+++ + Sbjct: 370 PAQFIPLAERAGLIGSIGMWALETGCKQLAAWTQDAEKAAWTLSVNVSALQFNAPSFFDD 429 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++++T P ++ L +E++ + + + RL G+ + LDDFGT S ++Y Sbjct: 430 VLNILTRTRIPPHKLILEVTENIFLNAQGSPLQEGIRRLMAHGVGIALDDFGTGYSSMNY 489 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P +K + + ++ ++K I+ +++ +AK ++ ++A+ + L Sbjct: 490 LRNLPITRIKIDRTFISDIAHSKKDQGIVSAMLTLAKALDLQVVAEGVETTAQFDYLKEA 549 Query: 931 GCDYIQDSHVASPLGFNSI 949 GC Q A P ++ Sbjct: 550 GCCAFQGYLFAKPQDISAF 568 >gi|86739716|ref|YP_480116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Frankia sp. CcI3] gi|86566578|gb|ABD10387.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Frankia sp. CcI3] Length = 725 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 135/632 (21%), Positives = 257/632 (40%), Gaps = 22/632 (3%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 L D + A + G + + + R Sbjct: 86 ICGTRLLTDLRLGTADGYGARLAALQGGLAQGYAHALRERILAGQDSIHRAALHASDARF 145 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + GS + D + +LG+ G + G + H D R Sbjct: 146 RMIFTGSAIGILINDGGGRIIDANDAFLRMLGVGPGQVQGRSIDEFA--HPEDARELREA 203 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + ++ E+R W + + + +G + + D+T++ Sbjct: 204 YAAQRTAGPEHIRMEWRFTGIGGSVVWAELTTSCLRDDDGRCRAQLSMIVDVTDRHLLQN 263 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A D LTG+PNR ++R+ ++ T + ID+D +K +ND LG V Sbjct: 264 QLRRQARHDPLTGLPNRTVLIERVHELMA---TGPERCIGLCFIDLDGFKMVNDSLGHDV 320 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LV++T R+ +L +L R+ G+ F I++ + A + ++A P+ + Sbjct: 321 GDRLLVAVTDRLRRVLSPEQLLVRMGGDEFVILVADTAGTADAVAVAETVLAALASPLRV 380 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRV 705 + +++ ASIG + +++L+ A++ +Y AK G F + R Sbjct: 381 GDHALSIGASIGIVERPVAGGDYADLLRAADITLYRAKAEGKGRWALFEAERGARQVTRH 440 Query: 706 MIKEDLCLAVENSELYLVYHPIIR--------LMDEEIVGLEALIQWDHPKWGNISSSEF 757 + L A+E + + Y PII + +VG+EAL++W HP G + F Sbjct: 441 TLSTMLPRALEQDQFVVEYQPIIALGDGAGARMAAGAMVGVEALVRWRHPGLGLLPPDLF 500 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE I + +LE R W++ +F+ +N+A++ + L E ++ + Sbjct: 501 IGMAEETGQIVPLGRRVLELACRQARQWQECHPH-ALFVSVNLAARQTREAGLVEQVRRI 559 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T SP ++L +ES MG + +L L ++G+ + +DDFGT S L+YL +P Sbjct: 560 LDETGLSPDLLQLELTESAFMGTADEPLRVLRGLAEMGVRIAIDDFGTGYSNLAYLRRLP 619 Query: 878 FDTVKFNGSLM------TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 T+K G + + I+++++ +A + T+ A+ + + + L Sbjct: 620 VHTLKLAGPFVEGFHSARDADPGDEEIVQTLVTLAHTLRLTVTAEGVETPMQAERLRAAA 679 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 CD Q A PL I + + R T Sbjct: 680 CDSAQGFLFAPPLTAEEITQRILTRSAGSDRT 711 >gi|74317498|ref|YP_315238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74056993|gb|AAZ97433.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Thiobacillus denitrificans ATCC 25259] Length = 1012 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 132/570 (23%), Positives = 248/570 (43%), Gaps = 22/570 (3%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 E+ +L A+ + D + LG + + Sbjct: 451 ERQRASEQLALVNFALNHVKEAALLADENAQFHYVNDEACRSLGWTPEELLRLKVTDIDR 510 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + R +R + + ++ + + + + + + G + + Sbjct: 511 -DLTGRGQWRALWEQIKVLNSMTIEGHY--KTRSGRTFPVEVSVNYFV--YGGREYVLSL 565 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D+TE+K+ I A+ D+LTG+PNR+ LDRL LS+ +M++D+D+ Sbjct: 566 VRDVTERKEVEAQIRSLAYFDSLTGLPNRRLLLDRLNQA-RLSSERTREYGALMILDLDR 624 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----I 630 +K +ND G VGD +L+ + RR+ ++ D + RL G+ F ++L + Sbjct: 625 FKTLNDTQGHDVGDRLLIDVARRLTASVRQNDTVCRLGGDEFVVVLEGFGSDEDQAVTQA 684 Query: 631 ADFAIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A +R ++ P +L T S+G + T+ +LK A++A+Y AK G Sbjct: 685 EAIAEKVRAALNQPYSLSGNGSRFHSTTSVGLTLFCGHDATADMLLKQADVALYQAKDAG 744 Query: 689 GNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N V F + R+ ++ L A+E E ++ Y P + E ++G EAL++W Sbjct: 745 RNLVRFFNPAMQAAIDTRMAMEAALRQALERDEFHVYYQPQVDQR-ERVIGAEALLRWRP 803 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 IS EF+ +AEE +I I ++L+ + +W + I +N++++ Sbjct: 804 QGNEAISPLEFIPLAEETGLILPIGKWVLDVACAQLKAWESDPRAAHLKIAVNVSARQFH 863 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 + + +Q ++++ P+R++L +ESVV+ E + L +G+S LDDFGT Sbjct: 864 EPDFVATVQDSLARSGVDPTRLQLELTESVVLEKIETVVSRMEELNALGVSFCLDDFGTG 923 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LSYL +P D VK + S + AI+++I+ M++++ +IA+ + Sbjct: 924 YSSLSYLKRLPLDQVKIDQSFVRDVVDDSNDAAIVQAIMAMSRSLGLNVIAEGVETHAQR 983 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954 L C Q P+ ++LK Sbjct: 984 DFLAG-KCLGYQGFLFCEPIPIEQWERVLK 1012 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 34/287 (11%), Positives = 89/287 (31%), Gaps = 20/287 (6%) Query: 257 SEIALSSSLIIFLFMYLHWN-RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315 + + ++S+ + L W + ++ G A + +++ A+I + Sbjct: 177 ASLIAAASIGLVAEPTLRLRFSWSYWLFLLSLVGSATVWMIWNTWALRGETVANIRVDAV 236 Query: 316 ASIVLYYTYFIIYHGMKGYERAVLL------IPAWILIFIWFIGLWMAITKRLDNDIIQP 369 S+ + G + I + + + + D+ Sbjct: 237 FSLTALGMGVATLYWQVGASPNLHWERWSQAIVRVLPLATVVLAGSAVVLLGDRTDVSAT 296 Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQ------GIFSDGERQSLAVLGSGDIVWDWDI 423 + + + +I +++ + +Q + +++L + D+VW D Sbjct: 297 SRTAVTIASLTVIVLAMLRQGMLLREHAQLKIVTRNLEESERQKNLILHTLPDLVWLKDA 356 Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQY 481 P G M G + FR + + Sbjct: 357 DGVYQMCNPAFERFTGRTEAEMRGKTD--FDIVGPELARKFRNEDAQAMLADHPLTSMHA 414 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 ++A D + + + + + +L +GIA D+TE++++ E Sbjct: 415 ---LQAVDGRDVQIESVKTTLRDRDRRVLGILGIARDVTERQRASEQ 458 >gi|330955000|gb|EGH55260.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 897 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 151/571 (26%), Positives = 271/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F +++ + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ LK R+P + Sbjct: 868 DVGQGYLFDRPIPGEELIEKLK-RYPRRPSA 897 >gi|209523402|ref|ZP_03271957.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209496144|gb|EDZ96444.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 655 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 143/558 (25%), Positives = 243/558 (43%), Gaps = 45/558 (8%) Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYI-------HINDRDNFRT----ILDSFVGY 474 P G + + + H + D + Sbjct: 72 RITFVNPLFTGNTGYTADEFFSKNPSLMQITKTLREGSHQENPALVNRFKDVSEDQHLPG 131 Query: 475 RR------------GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 G Q E R + ++ RP+ +++ R I Sbjct: 132 GSSLNTSDNEGELSGIWQCE-PSRHKE-----IVKSQRPVLDADKKRRRREEARLLI--- 182 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + D LT + NR F+ L +++ + D + V+++D+D++K IND Sbjct: 183 --------YKSTHDGLTDLYNRSYFMRELDEVVERAKEDPEYQFVVLLLDVDRFKIINDS 234 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD +L + R+ E + +ARL G+ F I+ NN +I+ A ++ + Sbjct: 235 LGHQVGDRLLEGVGERLRECIPPWHTVARLGGDEFAILFDDLNNLTQISQTAQNIQYHLQ 294 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700 PI L E+E+ T SIG A S E+L++A+ A+ AK +G F + Sbjct: 295 QPIILGEQEVFSTVSIGIAISNVSYSNGKEILRDADTALSQAKSKGKACHVIFNPTMHRE 354 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 DR+ ++ DL A+E EL L Y PII L EI+G EALI+W+HPK G +S S+F+ I Sbjct: 355 AWDRMQLENDLRHAIERQELQLHYQPIISLETLEIIGCEALIRWEHPKRGWVSPSQFIPI 414 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALIS 819 AEE +I+ I ++L + W+ F+ +N+++ L + +L +Q ++ Sbjct: 415 AEETGLIQPIGEWVLRSACETLHRWQLMFPQGKQPFMSVNLSTYQLTNPQLVNKVQTILE 474 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T P R+KL +ES + E + L ++GI L +DDFGT S LS L + P Sbjct: 475 ETGCDPCRLKLELTESTIAEYAEVVVPQMRELSELGIKLCIDDFGTGYSSLSRLYHFPIH 534 Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 T+K + S + G E ++ I +I+ +A + +IA+ + + L GC Q Sbjct: 535 TLKIDRSFIEGIDESQDQLKIAYAIVNLAHTLGLEVIAEGVETPEQMAVLQAWGCQLCQG 594 Query: 938 SHVASPLGFNSILKLLKE 955 + + + + L + Sbjct: 595 YLFSKAVDDQKMEQFLSQ 612 >gi|146305401|ref|YP_001185866.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] gi|145573602|gb|ABP83134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] Length = 1254 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 135/572 (23%), Positives = 254/572 (44%), Gaps = 21/572 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 R V + + + + V + +L + G + Sbjct: 690 ARREAEARYHTLVEHAPEAILLFSPEGGIVECNENALQLLRYRREDLLGKTIQSISPPRQ 749 Query: 459 NDRDN----FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D R L + ++ R + + +R+ M G+ L Sbjct: 750 ADGSLSSRTGREHLQRAIAGDTPVFEWTHR--DSAGRQLPCEVRLVRMP---GEELLIRA 804 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 DI+E+++ I A+ D LTG+PNR+ LDRL +D + +L ++ ID+D Sbjct: 805 SVLDISERQRYQREIERLAYSDELTGLPNRRLLLDRLQHAMDRENREGSL-GALLFIDLD 863 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LK 629 +K +ND LG +GD +L +T R+ L+ D LARL G+ F ++L + + Sbjct: 864 HFKTVNDSLGHLIGDALLCEVTTRLARELRTEDTLARLGGDEFVVLLEALGSEPQAVAEH 923 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A + + + + E+ ++ASIG A ++++LK A+ AMY AKH G Sbjct: 924 AAAVGEKLLRGLQGSCLIEGHELAISASIGIALHPLGLQRAADILKQADTAMYRAKHAGR 983 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N + F R+ ++ +L A+ +L LV+ P + L D+ + G E L++W HP Sbjct: 984 NALHFFAPEMQAAIDQRLQLQGELRQAIARQQLQLVFQPQLVLADDTVAGAEVLLRWLHP 1043 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G IS +F+ +AEE +I+ I ++LE+ + W+ Q P + + +N++ ++L Sbjct: 1044 ERGEISPDQFIPLAEETGLIQDIGQWVLEQSCATLARWQAQ--WPQLVLAVNLSPRELRQ 1101 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ + + ++L +E V++ + +R + +L+ G+ +DDFGT Sbjct: 1102 AGCVARVEDCLRRHGVPAQALELEITEGVLLEDVDRCIGNMQQLKAQGVRFAIDDFGTGY 1161 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL +P D +K + S + ++++I+ +A+N++ +A+ I + Sbjct: 1162 SSLTYLKRLPLDRLKIDRSFVADLDGDASGRMLVQTILMIARNLDLECVAEGIEQPSQLA 1221 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L GC Q P+ L L+ R Sbjct: 1222 LLREQGCALGQGYLFGKPMVEAEFLAWLQARQ 1253 Score = 100 bits (250), Expect = 1e-18, Method: Composition-based stats. Identities = 48/335 (14%), Positives = 104/335 (31%), Gaps = 16/335 (4%) Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266 + ++ +L P +A + + + L + S + + A + +AL++ L+ Sbjct: 113 LLRFLAFG--VLAPAALVALGLQANLWLTGLQLGEHWAQASLAVWLNDAINLLALATPLL 170 Query: 267 IFLFMYLHWNRWHAKV----GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322 +F L W + + L + ++ + L ++ Sbjct: 171 VFGSPLLRARGWLPESTAADAQALSISRSWRGWLLAFGIFLALMALVGSLPLLVALPFLG 230 Query: 323 TYFIIYHGMKGYERAVL-LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381 + + A+ + + + LD Q L L++ L Sbjct: 231 IGMLALALRYAFAGALYGAVLVFAATLPLPLLRGDPGFAMLDLPRSQLQLAVLLLMGAAL 290 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR---DRVTTTPDIATIL 438 + + + S + R +LA+ S V D + V I Sbjct: 291 LVGRALGDLRQALSRSARMQQQLARANLAMEASPLGVTIADARQPDLPLVYCNAAFTQIT 350 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G ++ G +L +D L S + R R D + W + Sbjct: 351 GYSADETLGRNCRFLV---ADDHAQLELQPLRSALREGRSG-HAVVRNYRKDGRPFWNEV 406 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + PM + G I ++G+ D+TE+ + + Sbjct: 407 VLAPMRDERG-ISHFVGLQQDVTERVELAAQVEQQ 440 Score = 74.6 bits (182), Expect = 7e-11, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 2/156 (1%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 ++ + V+Q + + ER L + + +ILG Sbjct: 551 LVRVYGVVQDISERKRTESQLRERDERLRLFFEAPLIGMALTTQSFGWEEVNQKLCSILG 610 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + + +W H +D + L+ + + + R AD Q + + + Sbjct: 611 RSRDELMAS--SWHQLSHPDDLAGEQARLEEVLLGSSDGFEMDKRFLRADGQVVFTRLSL 668 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 R + G ++ + D + ++++ Sbjct: 669 RAVRGGAGRQTLFLLLVEDTSARREAEARYHTLVEH 704 Score = 54.2 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 39/371 (10%), Positives = 99/371 (26%), Gaps = 31/371 (8%) Query: 189 TLYRGIIIGVASLLAIFLTIFYM-VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPS 247 L GI + + +L+ + + ML A+ Y ++ + + L Sbjct: 204 LLAFGIFLALMALVGSLPLLVALPFLGIGMLALALRYAFAGALYGAVLVFAATLPLPLLR 263 Query: 248 GELLIWRACSE--------IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299 G+ + L + ++ + ++ + + Sbjct: 264 GDPGFAMLDLPRSQLQLAVLLLMGAALLVGRALGDLRQALSRSARMQQQLARANLAMEAS 323 Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF-------- 351 + A + L +T Y + R + A + Sbjct: 324 PLGVTIADARQPDLPLVYCNAAFTQITGYSADETLGRNCRFLVADDHAQLELQPLRSALR 383 Query: 352 -------IGLWMAITKRLDNDIIQPALV----GGLVLIVILIGFTVIQHVLATGYFSQG- 399 + R + + A + G + + T + A + Sbjct: 384 EGRSGHAVVRNYRKDGRPFWNEVVLAPMRDERGISHFVGLQQDVTERVELAAQVEQQRAQ 443 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + S + W +++ + + I+ L Y Sbjct: 444 LLRQNHLFSQTEDIANLGGWVFELGDSSMFWSDGCYRIVERDIHLGPPSFEQALHYYDAP 503 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + L + + + E R+ A + +R + +G ++R G+ DI Sbjct: 504 SQTLIIETLQAAL-GGLDEVDVELRLAARLGG-RLVRVRGMAERDDDGSLVRVYGVVQDI 561 Query: 520 TEQKKSLEGIL 530 +E+K++ + Sbjct: 562 SERKRTESQLR 572 >gi|284055164|ref|ZP_06385374.1| D-tyrosyl-tRNA(Tyr) deacylase [Arthrospira platensis str. Paraca] Length = 510 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 144/446 (32%), Positives = 248/446 (55%), Gaps = 6/446 (1%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +I +++ +L A D LTG+PNR F+D+L + + + + R V+ +D D++ Sbjct: 62 REILHHQQTQSKLLHMASHDALTGLPNRVFFMDKLMQAISETKQNPDYRFAVLFLDCDRF 121 Query: 577 KKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 K +ND LG GD +L+SL RR+ L P LAR G+ F I+L + +++ + A Sbjct: 122 KVVNDSLGHLTGDRLLISLARRLQLTLKMSPTNLARFGGDEFTILLENIHSTQAVTVIAE 181 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 ++K++ P L E+++ + ASIG TS ++L++A++AMY AK +G F Sbjct: 182 RLQKALTWPFQLDEQDLFLEASIGIVIGTSEYTEPEQVLRDADIAMYKAKSQGRGCYRFF 241 Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + R ++ DL LA+EN+ L Y PII L D ++G EAL++W HP+ G IS Sbjct: 242 DGTMHNDAHRRFQLENDLRLAIENNHFLLNYQPIIELQDGSVMGFEALLRWHHPEHGIIS 301 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCE 812 +EF+ IAE+ +I I L++L++ + + W+ + + P + +N++ K L E Sbjct: 302 PAEFIPIAEDTGLIIPIGLWVLDQAVKQLNLWQKKGLITPQFRMSVNLSVKQFTQPYLIE 361 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ K + S +KL +E+ ++ NPE +R LL +L I L+LDDFGT S LSY Sbjct: 362 EIDRILVKNNFQSSYLKLEITETAIVENPEAARQLLQQLTHRNIHLSLDDFGTGYSSLSY 421 Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P +T+K + S +T G+ + + I+ +II +A ++ ++A+ I + +L + Sbjct: 422 LHRFPVNTLKIDRSFITCIGTPNENLQIVDAIITLAHQLKINVVAEGIETAEQLAKLRSL 481 Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956 GCD Q + + P+ LLK+R Sbjct: 482 GCDQGQGYYFSKPVESMMAEDLLKQR 507 >gi|308270640|emb|CBX27252.1| Uncharacterized signaling protein PA1727 [uncultured Desulfobacterium sp.] Length = 785 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 126/449 (28%), Positives = 230/449 (51%), Gaps = 16/449 (3%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+KK+ + I A+ DNLT +PNR F + + ++ + + V++ID+D + +IN Sbjct: 339 EKKKAEDRIHFLAYYDNLTNLPNRYFFKELVNKTIEYANRYKHT-FAVVIIDLDDFNRIN 397 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARL----------SGNRFGIILISENNSLKI 630 D LG VGD L ++ R+ L+ D +AR+ G+ F ++L +N Sbjct: 398 DTLGHNVGDKFLKIVSSRLLNTLRSSDFVARIFDEEEPIARMGGDEFIVLLHELDNDGNC 457 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + ++ L E+ +TASIG A + ++KNA+ A+++AK RG N Sbjct: 458 VHVAHRILNELSQAYELDGSEVFITASIGIAVYPDDGRDVENLIKNADTALHYAKKRGKN 517 Query: 691 HVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + ++ + + ++ +L A+E E L Y P + L +I+G+EALI+W P+ Sbjct: 518 NFQFYLKSMNETALELLTLETNLRRALERQEFLLYYQPKVDLTTRKIIGMEALIRWKTPE 577 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 IS ++F+ +AE +I I F+L+ W++ + I + IN++ + Sbjct: 578 GILISPAKFIPLAEANGLIVPIGKFVLQTGCLQNKKWQEACSKR-ISVAINVSGRQFGQK 636 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + + +I T P ++L +E+++M +P+R+ L +L+++GI + LDDFGT S Sbjct: 637 DFVQEVLTVIEDTKLDPQYLELEITETIIMTDPKRAVRDLEKLKEMGIQIALDDFGTGYS 696 Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+YL +P D +K + S + + I+++II MA N+ +IA+ + E ++ Sbjct: 697 SLNYLQRLPLDAMKIDISFIRNVVTDPNDAVIVKTIIAMAHNLNLKVIAEGVEDEHQLEF 756 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GCD IQ + P+ LL Sbjct: 757 LREHGCDIIQGYLFSPPVPAEEFFDLLTR 785 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 47/169 (27%), Gaps = 6/169 (3%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 L L++ ++ ++ + + + +R S D + D + Sbjct: 23 TLLLSILSALMIYILVVRPMKTLSEFAHVETDLRESEKRYRRLFETSDDGIMILDFETGQ 82 Query: 428 VT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 V P + + G G + + D L R + Sbjct: 83 VKDVNPFLLNLFGAEREEFIGKEFPQIRCFNDFDIKGIE--LRELREKGRVHHDGMA-LE 139 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 D + + G +IT++KK+ + ++ A Q Sbjct: 140 TIDGRHVITEFIGNV--DQEGFQKVIQFNFRNITDRKKAEDELIDRARQ 186 >gi|253998882|ref|YP_003050945.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4] gi|253985561|gb|ACT50418.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. SIP3-4] Length = 776 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 153/772 (19%), Positives = 289/772 (37%), Gaps = 49/772 (6%) Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV----NLPSGELLIW 253 + + Y+ ++ +AW+ I V + + W Sbjct: 38 FVFAAIVASLLVYVQLD--VVPLAVCLAWMTFFLIVYGLRKALVWVYKRTPVHAYPPGFW 95 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 I + + H + + Y + A Sbjct: 96 LNWFRALSGLCGIAWGLSGIFLFYPHDTAHQAFLTLALAGVCGGAVMAYATDKPTAYAF- 154 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 + G ++L+ +L ++ + RL +I+ Sbjct: 155 ----AGGLILLGLPRFFWGGNHFSMLMAVNLLLFILYVTIASFKLANRLRENIV------ 204 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++ H + I + +RQ L + + V +WD+ + Sbjct: 205 ----------LRIMAH-----ESQEAINAMAQRQKLHIDHTPLAVIEWDVNFRVTSWNAA 249 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 I G G ++ I D + S + + G ++ D + Sbjct: 250 AEHIFGYPPSEAMGRHMSF---IVPPDGQMMAQDIMSKLTHEAGGQHWQHDNVRRDGRVI 306 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + N I+ + + D T KK+ + I A+ D LT +PNR+ ++RL+ Sbjct: 307 HCEWFNTAIKNDQNRIIGFASLIQDETAYKKAQDEIERLAYFDALTNLPNRRLLMERLSQ 366 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L+ S + + +M ID+D +K +ND G A GD +L + R+ ++ D +AR+ Sbjct: 367 ALNNSRSSHRI-GGLMFIDLDNFKTLNDSRGHAFGDLLLKEVAARLLRAVRNHDTVARIG 425 Query: 614 GNRFGIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 G+ F ++L A A + I++P +L + +ASIG + + Sbjct: 426 GDEFVLLLEDIGRDESAAIQTASQIAEKILADISLPFDLGNYKHQCSASIGICMFYRQGM 485 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726 E+LK A+ AMY K G N+ F S +K DL A+ + L Y P Sbjct: 486 HVEEVLKRADAAMYETKRAGRNNYRFFDESMLPVIDSRASLKNDLRFALSLGQFELYYQP 545 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + G E L++W HP+ G + EF+ +AEE MI I ++L++ + W Sbjct: 546 QVDGEL-RTTGAEVLLRWHHPERGMVPPGEFIPLAEESGMIIPIGNWVLQQACMQLGKWS 604 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 A + + +N+++ + E ++ + ++ + + L +ES+V+ N + Sbjct: 605 HHAKTSQLRLSVNVSAMQFGQADFVEQVRHALLESGCNEKLLVLELTESLVIQNIDDIVS 664 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-----KRIAILRS 901 + L+ IG+SL++DDFG S LS L +P D++K + S + + I+++ Sbjct: 665 KMQALKSIGVSLSMDDFGLGYSSLSLLLRLPLDSLKIDQSFVREIQDNAPKNDSAVIVQT 724 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I+ M KN+ +IA+ I L ++GC Q P + L Sbjct: 725 IVAMGKNLGLDVIAEGIEEPYQQAFLEQVGCHAYQGYLYGRPSELSVFEHTL 776 >gi|120555164|ref|YP_959515.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Marinobacter aquaeolei VT8] gi|120325013|gb|ABM19328.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8] Length = 908 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 140/613 (22%), Positives = 270/613 (44%), Gaps = 13/613 (2%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 W + +P +V G L + L+ + + ++ + +Q R Sbjct: 298 WLLQTRSTPAFDYLAADPRPPIVLGSGLAISLLLWLFVLALIRSRLIAQ---VSAGRYRA 354 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 G+ ++ D + +P ILG + + +H++D + + + Sbjct: 355 ITEGAANVTLVMDRRGRPLYASPSSRDILGFDPDKVE--ALEFEKLVHMDDWSHLQRGFE 412 Query: 470 SFVGYRRGRLQYEF-RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + ++ RVR AD Q+ M M + G + + D+T+ K + Sbjct: 413 ESMASPGKQMPVVRARVRDADGQWRDMEGTFTAMLSVPG-VNGVVLSLRDLTQLKAAQSE 471 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + AF D LTG+ NRQ F DRL ++ S +M +D+D +K+IND LG G Sbjct: 472 LHRLAFYDPLTGLANRQLFRDRLNHVVRRSRRSGEA-AALMFLDLDGFKRINDTLGHDAG 530 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D++L + + + ++ D +ARL G+ F ++L + S A + + + I L Sbjct: 531 DELLRQVAQWLEGCVREEDSVARLGGDEFVVLLSRISGSEAAGKVAENILRRLCQRIRLN 590 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708 + E+ VT SIG + ++K A+LAMY AK G N + F + + Sbjct: 591 DHEVGVTVSIGITMIPHDSEDAGALMKYADLAMYRAKELGRNTYQFFTPAMNIQAARRLL 650 Query: 709 E--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 + +L A++ L Y P + L + ++G+EA ++W HP+ G +S+ +F+ +AEE + Sbjct: 651 QQEELATALDGDRFVLHYQPKVDLATQRVIGVEAFLRWHHPEKGLVSAQQFITLAEETGL 710 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + L + + + + + +N + + L D+ + ++ +I++T SP Sbjct: 711 IIRLGELALRQACIQVQALERA-GFESLKMAVNFSVRQLTDSGFLDMIRRVITETGVSPE 769 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 R++L ++ +P R LL L +G+ L LDDFGT L L +P D +K + Sbjct: 770 RLELEMPAELLNEDPRMLRELLVSLNDLGVCLILDDFGTGSCSLVALQQLPLDVIKIDHR 829 Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + ++I +A + T++A+ + + L GC Q + + PL Sbjct: 830 FIRDIPYNVSATDVASAVIALAHKLHLTVVAEGVETLQQLTFLKSAGCAQCQGNLFSYPL 889 Query: 945 GFNSILKLLKERF 957 ++++ L ++ Sbjct: 890 DEDALIGFLIRQY 902 >gi|221067708|ref|ZP_03543813.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] gi|220712731|gb|EED68099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] Length = 827 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 122/577 (21%), Positives = 259/577 (44%), Gaps = 23/577 (3%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL------GLAS 442 + ++ + S D ++ D V P +L GLA+ Sbjct: 237 YSYRDITAESSSATELRLAARVFESSLDGIFIADAAGAIVQINPAGVQLLHGRSVLGLAA 296 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++ + + + D + ++ +D Q + + + Sbjct: 297 WALFESEGGPVSDL----LELASARWDV-----GSFWEGNLWLKQSDGQRCAVWLSWVAL 347 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G +++ IG D+T Q+ + + I A+ D LTG+PNR S + + +A Sbjct: 348 RDGYGRLVQSIGFMRDMTMQRSAQKQIEQLAYSDALTGLPNRLSLSRHVQAAI-TAARFT 406 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ +D+D++K IND LG GD VL + +R+G LL+ D+L R G+ F + L Sbjct: 407 QQPFSILFLDLDRFKIINDSLGHDFGDRVLKLVAQRLGGLLRPADVLCRQGGDEFVLYLH 466 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + A + + + P L +V SIG A + + +T E+++ A++AMY Sbjct: 467 DCTG-EGASAVAARILEEMRQPFMLDGLGFSVQCSIGAAQFPTDGLTLDELIRQADIAMY 525 Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 K RG + ++ R+ ++ + A++ + + + P + + IV EA Sbjct: 526 RVKERGRGNFSFYQPQMSAGLLSRMKLEHAMRQALDKGHMAVHFQPQVHIRTGRIVAAEA 585 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W P+ G IS + F+ +AEE + A++ ++LE+ ++ W P+ + +N+ Sbjct: 586 LLRWTDPELGVISPAAFIPLAEESGYVVALDAWVLEQSVQEAARWLAMG--KPVKVSVNV 643 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + + + ++ ++ + ++L +ES+++ + L + ++ ++G+ L + Sbjct: 644 SALEFRQPDFVDRLKRVLEASGLPAQWLELELTESILLQEAQEMALRVHQIAELGVGLVI 703 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL +P +K + S + G AI+ +II M + + ++A+ + Sbjct: 704 DDFGTGYSSLAYLKKLPISKIKIDQSFVRGLPHDAGDKAIVGAIISMGQALGVELVAEGV 763 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + ++ DY Q + L K L++ Sbjct: 764 ETQEQCQAIEQLQGDYFQGYLCSPALPAEQFRKRLEQ 800 >gi|209521190|ref|ZP_03269914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. H160] gi|209498362|gb|EDZ98493.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. H160] Length = 667 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 245/542 (45%), Gaps = 11/542 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + GL + G R+ ++ D + + R + Sbjct: 129 DRHGRIQRFNRLAEELTGLREEDIIG--RSVRTLFMSSNGDAVSNQVSADFFNRGEPYEI 186 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E R++ + ++ S + + I DITEQ+ + + ++ A D LTG+ Sbjct: 187 ERRIKTVHGERLFLFRNKFVRSGNGIEDQFLICSGTDITEQRLAQDRLIEQATTDPLTGL 246 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 NR + +R+ ++ +A V+ +D+D +K +ND G GD ++ ++ I Sbjct: 247 ANRNAIQERIQIAIEQAA--PGETVGVLFLDLDNFKTVNDHYGHVFGDRLICDVSDAIRN 304 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D LARL G+ F I+L ++ ++ + + A + + MP + E+ SIG A Sbjct: 305 CLNPGDSLARLGGDEF-IVLATKGSADALENTAQRILDRMRMPFAVGLVEVYTGCSIGIA 363 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 W + ++++A+ AMY AK G F R + + + +L +E + Sbjct: 364 RWPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPDMNRRVAEFMWLDTNLRRGLEEGQ 423 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y P + L + G EAL++W+ P+ G I +EF+ AEE +I + +++E A Sbjct: 424 FALHYQPKLNLATGAVQGAEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMETAA 483 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + W+ + + IN++++ L D + + P + L +ES ++ Sbjct: 484 KQAARWKAAGYG--LRVAINLSARQLTDTAVVRHFTEALQHAGLDPCLVDLELTESCLIE 541 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897 N + L+ + R++G + LDDFGT S LS LG IP D +K + S + A Sbjct: 542 NEAAAIELIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDMIKLDRSFVRSIEADMKAQA 601 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++RS++ +A+ ++ ++A+ I E + + R+G DY+Q A P+ + L +R Sbjct: 602 LVRSMVAVAQELDFQVVAEGIETEAEEAFMKRLGVDYVQGFLYAKPMPATEFERWLLDRR 661 Query: 958 PL 959 L Sbjct: 662 KL 663 >gi|302534564|ref|ZP_07286906.1| sensory box/GGDEF protein [Streptomyces sp. C] gi|302443459|gb|EFL15275.1| sensory box/GGDEF protein [Streptomyces sp. C] Length = 623 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 132/589 (22%), Positives = 267/589 (45%), Gaps = 26/589 (4%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 I+ L + + + + A + + + + +A +LG ++ Sbjct: 26 SIRPALTERHPAVSVVPEPRDYRAAFDAAHLAMAVVGRSGEVIAANRALAALLGAEPHAL 85 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G L + + R+ RL+ R++ D W + + P++ + Sbjct: 86 AGQCAADLVDLAAE--ARTWQAYQEVLRGRQARLRCTRRLKHPDGHSLWTEVTLGPVTGT 143 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA--TDDN 563 + DI++++ + D +T +PNR F +RL+ L+ SA T Sbjct: 144 PD----VLLSVADISDRRDLQARLRHLQMHDPVTRLPNRALFFERLSAALEASAYGTGGT 199 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-------LARLSGNR 616 R + +D+D +K +ND LG VGD +L ++ R+ + +ARL G+ Sbjct: 200 GRIGLCYLDLDGFKAVNDTLGHRVGDRLLTAVAARLTQCADQSGYGRSGGHLVARLGGDE 259 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F +++ + ++A+ A ++ ++ P +L + ++V+ASIG ++ +++ +++ Sbjct: 260 FALLVEDSTGTEQLAELARSVLAAVQEPFDLAGQRLSVSASIGVVERDAAGTSATGLMQA 319 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ +Y AK G F + L AVE E L Y P++ L Sbjct: 320 ADTTLYWAKADGKARWTLFDPERNAHRMTRQALSSSLRPAVERGEFELEYQPLVDLESGV 379 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPP 793 + G+EAL++W+HP++G ++ + F+ IAEE I + ++L R W+ +Q + P Sbjct: 380 VRGVEALVRWNHPQFGMLTPNRFIGIAEEDGSIVQLGQWVLRTACRQARRWQVEQPSDSP 439 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 +F+ +N+A + + D++L + ++++T +P ++L +ES VMG+ R L L Sbjct: 440 VFVSVNVAVRQVWDSDLVGDVAEILAETGLAPQLLQLELTESAVMGSAGRPLQALQALSD 499 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPM 905 +G+ + +DDFGT S L+YL +P +K +GS + G I+ +++ + Sbjct: 500 MGVRIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFRYEEGTHPNPADETIVEALVQL 559 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 A + T+ A+ + L R+GCD Q + + I +++ Sbjct: 560 AHRLGLTVTAECVETAGQAARLRRVGCDTGQGWLYSRAVAPERIAEMIA 608 >gi|83311792|ref|YP_422056.1| signal transduction protein [Magnetospirillum magneticum AMB-1] gi|82946633|dbj|BAE51497.1| Predicted signal transduction protein containing a membrane domain [Magnetospirillum magneticum AMB-1] Length = 548 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 130/550 (23%), Positives = 251/550 (45%), Gaps = 22/550 (4%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + D V D + + + P T++G S R I+ + Sbjct: 12 LDSINDAVIIADGDGNPLRSNPAFETLMGFTSKGGAEVSRLAAGMIY-----------RA 60 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 GR + V D + + ++ S RY+ + ++ G Sbjct: 61 INPGAGGRWRG--LVTCPDGRERPFEVTAAAINPSTDSADRYLCVVRPAIAEEAGAAGGS 118 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 D LTG+PNR F DR+ + + +M + +D++ +ND LG GD Sbjct: 119 FG--YDTLTGLPNRDLFGDRIGQAVLQANRT-GASVALMTMGLDRFTLVNDALGHGAGDR 175 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L+ + RR+ ++ D RL G++F ++++ ++ A ++ P L + Sbjct: 176 LLMEVARRLKMCVRETDTAVRLDGDKFA-LVMAIADTDDSVIVAEKALNAVKEPFALDGQ 234 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIK 708 E+ VT SIG + + +S++++K+AE A+++AK G N + F ++ R+ ++ Sbjct: 235 EVVVTFSIGISVYPLDADSSAQLVKHAENALHYAKVSGRNQYQFFSKDMNRKAKSRLELE 294 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 + A+ N E + Y P + + IVG EALI+W P+ G + EF+ +AEE I+ Sbjct: 295 GRMRRALANQEFVVFYQPKVSADRDAIVGAEALIRWMDPERGMVPPGEFIPVAEESGQIE 354 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++L + W++ PI + +N++++ L + + ++ T P + Sbjct: 355 PIGTWVLRQSCIQNRLWQEAGFN-PIKVSVNVSARQFRSPSLLQTVTEVLDSTGLDPKWL 413 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +ES++M + + + + LR +GI L++DDFGT S LSYLG P T+K + + + Sbjct: 414 ELEITESMLMNDVDTAVRKMKALRDLGIGLSIDDFGTGYSSLSYLGRFPITTLKIDRAFI 473 Query: 889 TGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 K I R+II +++ + ++A+ I L GCD +Q + + P+ Sbjct: 474 ADVDTNPKTAEIARAIIGLSRGLNLEVVAEGAEIAEHIMFLRNNGCDTVQGFYYSRPVPA 533 Query: 947 NSILKLLKER 956 + +++ +R Sbjct: 534 DEFERMMGQR 543 >gi|91775260|ref|YP_545016.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] gi|91775404|ref|YP_545160.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] gi|91709247|gb|ABE49175.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] gi|91709391|gb|ABE49319.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus KT] Length = 633 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 117/434 (26%), Positives = 222/434 (51%), Gaps = 7/434 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 K+ E A D +T +PNR +F +L+ + + ++V D+D +K IND L Sbjct: 188 KAEERAGFLANYDTVTDLPNRHAFSRHFHLLLEGARHRRGV-LALLVFDLDDFKVINDTL 246 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L + +R+ + + R+ G+ F ++L + + A +++A Sbjct: 247 GHDVGDKLLHLVAQRLMVAAGKKNTVYRVGGDEFAMMLDQPADVENVEAVANRFIRALAP 306 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701 PI L +R + SIG + + ++ +L++A+ AMY+AK RG N+ + F + Sbjct: 307 PIVLNDRNFYIGVSIGASIYPYDGEDAAHLLRDADAAMYYAKSRGKNNFQMFSAEMHHKS 366 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 S R++++ +L +A+E + L Y P L D ++VG+EALI+W HP+ G + S F+ +A Sbjct: 367 STRLLLETELRVALEEKQFELYYQPQFSLPDCKLVGVEALIRWHHPQRGLLCPSSFIPVA 426 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I I ++L R + W+ P+ + +N++ + L + M +I +T Sbjct: 427 EETGLIVRIGEWVLREACRQAMEWKALG--VPLRMSVNLSGRQFRQENLVQTMTKIIERT 484 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 S ++L +E+V+M + E + L L+ +G+ L +DDFGT S ++YL P + Sbjct: 485 GMDSSLLELEITETVLMEDAEATTTRLADLKAMGMHLAIDDFGTGYSSMAYLKRFPVSRL 544 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + +AI + I MA +++ ++A+ + + ++ L G D +Q Sbjct: 545 KIDRSFIRDIPNDPDDVAITTATIQMAHSLKLEVVAEGVETKAQLQFLREQGSDMVQGYL 604 Query: 940 VASPLGFNSILKLL 953 + P+ + +L+ Sbjct: 605 FSRPVSAREMAELV 618 >gi|228968479|ref|ZP_04129467.1| Sensory box protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228791185|gb|EEM38799.1| Sensory box protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 586 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 145/562 (25%), Positives = 271/562 (48%), Gaps = 11/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R D V+ ++ + ++ + + + +I Sbjct: 29 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 86 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + L + L E R + + ++++ I + P N +++ GIA D Sbjct: 87 KDHELLKKALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 143 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT + + + AF D LTG+PNR+ F L IL+ + T+ N VM +D+D++KK Sbjct: 144 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKVILNTAQTNAN-DVAVMFLDLDRFKK 202 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L+ + R+ L+ D++AR G+ F I+L + A + Sbjct: 203 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 262 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + E+++T SIG A + +E++KNA++AMY AK G N F Sbjct: 263 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 322 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +++ ++ +L A++ +E +L Y P + +EI+G EALI+W HPK G +S ++ Sbjct: 323 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKEIIGFEALIRWKHPKLGIVSPAQ 382 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I + ++L + W +Q + + +N++ +L + Sbjct: 383 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISM 441 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL Sbjct: 442 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 501 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + G + AI+ SII ++K + +IA+ + E + + L R CD+ Sbjct: 502 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 561 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ + LL ++ Sbjct: 562 IQGFFISKPVSSKDVWMLLHKK 583 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300074811|gb|ADJ64210.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 125/441 (28%), Positives = 228/441 (51%), Gaps = 6/441 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E +++ E I A D LTG+PNR ++ + + + + V+++D+D++K IN Sbjct: 658 ESRRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGM-VAVILMDLDRFKNIN 716 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G G+ VL + +R L+ DILAR+ G+ F +++ ++ +++ + A + Sbjct: 717 DTFGHETGEAVLQEIAQRFRNSLRELDILARVGGDEFIVLVDDFDDPVQLGEIAQKLLTE 776 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 P + +E ++ SIG A++ + ++KNA++AMY AKH G + F Sbjct: 777 ARKPFIIDGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEIN 836 Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + R+ ++ +L A+E +E + Y P I L + IVG EAL++W HP G + EF+ Sbjct: 837 TNTVERIALEAELRRAIERAEFVVHYQPKIELAEGRIVGAEALVRWQHPLRGLLPPGEFI 896 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I I L +L+ RDI R Q M I IN+ D L + ++ ++ Sbjct: 897 TLAEETRLIDQIGLLVLDVACRDIGLMRQQQ-MTCGRISINLTGSQFGDERLLDDIKEVV 955 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + PS ++ +ES+VM N ER+ ++ +R G ++++DDFGT S L+YL P Sbjct: 956 DRHGTPPSCLEFEITESMVMHNRERAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPV 1015 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +T+K + S + AI+++II M+ + ++ + + E ++ L G D Q Sbjct: 1016 NTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEKQLQALREFGSDEYQ 1075 Query: 937 DSHVASPLGFNSILKLLKERF 957 + + P+ + ++LL + Sbjct: 1076 GYYFSKPVPYAQFVQLLAGQQ 1096 Score = 39.5 bits (91), Expect = 2.8, Method: Composition-based stats. Identities = 14/187 (7%), Positives = 50/187 (26%), Gaps = 10/187 (5%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 W L+ ++ + + + L G++ +++ + + + + + Sbjct: 317 WSLVAVYARRMNDVLAPWRSRTENRILLTTGILGFILIALISFLVYYRYQRRLDHALSAS 376 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPY---IHIN 459 R D + + G+ + G H Sbjct: 377 EYRYRKLYEEGNDPIVLISAELRYLDCNAAALRFFGVPDKERIIGRKVGLFSRQKSRH-M 435 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 ++ + ++ + + + ++ R + + I DI Sbjct: 436 EQPDIDELVARVLSGQPQQFEWVTVRRNK-----IIHTDVTLNRAEFERGYAIFAILRDI 490 Query: 520 TEQKKSL 526 + +K++ Sbjct: 491 SARKRAE 497 >gi|226303624|ref|YP_002763582.1| hypothetical protein RER_01350 [Rhodococcus erythropolis PR4] gi|226182739|dbj|BAH30843.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 796 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 157/756 (20%), Positives = 320/756 (42%), Gaps = 25/756 (3%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 + +R + T A V + S + LIW A + + +S+ ++L Sbjct: 43 LFSRQVRQVTTVAPLANVANFFSACALLAYVVPPAHEEFRLIWGAAALAVILNSVRVWLP 102 Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA--SIVLYYTYFIIY 328 + R+ K + ++ Y + + I + +++ ++ Sbjct: 103 RAIQGERYSPKHTTRYDYWALMLEVVLLGVLYTILAAEMLPVIDGSRKLVLIATIAGVVG 162 Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 G L AW ++ L++ + + + + I+ + + Sbjct: 163 AGAVALSTVRSLGLAW-ILVHGLGLLFVMLAGATAEYFVLSFQLVVYISILCVGVVYLWA 221 Query: 389 HVLATGYFSQGIFSDGERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + ++ + SL + GS D +W+ D T+ ++ I G++ Sbjct: 222 SFRSRCLAEFEAAAERQTVSLLLDDFEGGSRDWLWEADTTGTLSHTSARLSQISGVSVSD 281 Query: 445 MHG-PIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRP 501 + +R L + + + R + + R + W + P Sbjct: 282 LRTLSLRGLLDRLDVGSTKSGRAAVHVIGDHLDRLMPFREVVIPVRVGGVDRWWSLSGHP 341 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + + + G+ +DITE+ IL A D LTG+PNR++F L+ L T Sbjct: 342 RLSEAMEFVGWRGVGSDITEKYNYERRILWLAATDGLTGLPNRRTFGTELSDALGAVRTG 401 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 + + ++ D+D +K +ND LG VGD +L+S+ R+ ++ + AR+ G+ FG++L Sbjct: 402 EQVLVGIL--DLDNFKSVNDTLGHPVGDKLLISVAARLNRVV-DGAMCARIGGDEFGVVL 458 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + ++ ++ P + I V ASIG+AS + + ++ +A+LA+ Sbjct: 459 RGTGDGGEVFA---RYLGALREPFFVRGNRIEVRASIGYASSPADSEDADTLVMSADLAL 515 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N V + + R ++L LA+E+ + L Y P +R + G E Sbjct: 516 YAAKSAGKNRVGKYSPALRARARERASALQELGLAIESRQFELYYQPQVRADTGRVEGFE 575 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W+HP G ++ F+ +AEE +I + L +L + ++W D ++ +N Sbjct: 576 ALLRWNHPVRGVLAPRIFIDVAEETGLIVPLGLQVLHMACAEAMTWPD-----DTYVTVN 630 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ L+ + + + + S R++L +E+ + E + L RLR GI++ Sbjct: 631 VSPVQLMSSGFGSAVNDALEASGLSSKRLQLEITETGAVE--ELAVAELDRLRATGIAIA 688 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919 LDDFGT S L +P D +K + S +T +E A++ S++ +AK + +A+ + Sbjct: 689 LDDFGTGYSSFESLKKLPLDILKIDRSFITELSEGDSAVVTSVVEVAKALGMQSLAEGVE 748 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ L GC+ +Q +++ P+ + + L Sbjct: 749 TADQLRLLLTAGCELVQGYYISRPMPATEVAEYLSA 784 >gi|241764427|ref|ZP_04762451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax delafieldii 2AN] gi|241366169|gb|EER60746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax delafieldii 2AN] Length = 1051 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 129/588 (21%), Positives = 252/588 (42%), Gaps = 25/588 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 V+Q + A + + RQ + V I G + Sbjct: 465 HIAVVQDISARKQMEASLRGNELRQRSILQRLPVGVCLVQDDGRMTFRNARFVEICGYSQ 524 Query: 443 GSMHGPIRNWLPYIHIN------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + +W ++ + R + S E+ +R + Q + Sbjct: 525 DDL-PTSEDWWRAVYPDPEYRERTRAAWAAACASAREGSGTIASGEYTIRCKNGQQRVVE 583 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 I M + ++ D++++K E I AF D LT +PNR+ +DRL L Sbjct: 584 IAGVTMDD------GHLVTMVDLSQRKADEEEIRYLAFYDPLTRLPNRRLLMDRLQQALA 637 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 SA ++++D+D +K +N+ G GD +L + +R+ + + D +AR G+ Sbjct: 638 TSARHQR-SGALLLLDLDNFKTLNETRGHERGDLLLQQVAQRLRQCVHEDDTVARPGGDE 696 Query: 617 FGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 F ++L + + + + + ++ P L + S+G ++ + T Sbjct: 697 FVVVLEDLGDNPEEAAARSEEIGQKILAALREPYQLDAEVHHSSLSMGITIFSGMRETVD 756 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729 E+LK A+LAMY AK G + + + + ++ D+ + + + L Y P I Sbjct: 757 ELLKRADLAMYQAKGAGRDTLRFYDPRMQAAVSARAAMELDMRVGLAQGQFELYYQPQI- 815 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 I G EAL++W HP+ G IS ++F+ +AEE +I + ++L+ R + W Q Sbjct: 816 -EHGRITGAEALLRWRHPQQGFISPAQFIPMAEESGLILPLGEWVLQAACRRLAQWSQQP 874 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 + + + +N++ + + A ++ + R+KL +E +++ + E + +G Sbjct: 875 GLAELDLAVNVSPRQFHQGGFVPQVLAALAGSGADGHRLKLELTEGLLLEDVEDTIEKMG 934 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907 +LR G+ +LDDFGT S L+YL +P D +K + S + + AI R+++ +A Sbjct: 935 QLRGYGVGFSLDDFGTGYSSLAYLKRLPLDQLKIDQSFVRDVLTDPNDAAIARTVVALAT 994 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ +IA+ + E + L R C Q ++ PL L++ Sbjct: 995 SLGLRVIAEGVETEAQREFLARSHCHAWQGFLLSPPLAVAEFEALVRR 1042 Score = 75.8 bits (185), Expect = 4e-11, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 35/133 (26%), Gaps = 3/133 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIH 457 ER + V D R V I+G M ++ H Sbjct: 353 ARRQSEERFRAVFNQAAVGVAQIDTQTGRFVRVNQKYGDIVGYTVEQMGQ--LSFQAISH 410 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 D ++ E R D W+ + + M +I + Sbjct: 411 PADLVEDLARMERLKAGEITEYHMEKRYFHRDGHTLWVDLAVSAMWAPGAQPDYHIAVVQ 470 Query: 518 DITEQKKSLEGIL 530 DI+ +K+ + Sbjct: 471 DISARKQMEASLR 483 >gi|225872418|ref|YP_002753873.1| cyclic diguanylate phosphodiesterase/diguanylate cyclase [Acidobacterium capsulatum ATCC 51196] gi|225794342|gb|ACO34432.1| cyclic diguanylate phosphodiesterase/diguanylate cyclase [Acidobacterium capsulatum ATCC 51196] Length = 806 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 155/804 (19%), Positives = 325/804 (40%), Gaps = 34/804 (4%) Query: 169 NLPQIYLWEPN------FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222 ++P+I W + + + ++GV++LL + + + ++ P Sbjct: 26 SMPRIRYWTLGWIFVLLHFTAQIAVQDVAWQSVLGVSALLLAGCSFL-IASSDAIHDPGE 84 Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282 AM L + + + + +L+ A Y+ W A Sbjct: 85 AMIAASLLGVPPIAYLCLTVYGVSTVPVLVAVALVGQLCMI--------YVSLRYWGADR 136 Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP 342 G + + + + I+ + + A A + + + + + + RA + Sbjct: 137 GIVRGNMVIALLIML---WIVYEIRAGQAILGVYGTLTEIFAINAWFYWRDFRRASAGVL 193 Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 +L + + ++ A + + F +I +L Q Sbjct: 194 TAVLGLLAWALVFPAALVVAAWWPHLHVSSELWNIPKYFVEFGMILTLLEEEI--QAANR 251 Query: 403 DGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 E + + +W +D+ + + G + + + Sbjct: 252 TSEDYRVLFENNPSPMWIYDLETLRFLRVNDAAQHVYGYSEEEF--RQMTLMDIRPQEEV 309 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 D + + D + + + + NG + R+ + ++TE Sbjct: 310 PRMLE--DVGLEREEMVFSGPWTHVYKDGRQSKVEVAAHTIHF-NGRMARFCLVV-NVTE 365 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +++ + +L A D LTG+PNR DR+ L ++ D R + ID+D++K+IND Sbjct: 366 REELHQQLLYQAHHDLLTGLPNRLLLKDRMQQTLTRASRQDR-RVAFVCIDLDRFKQIND 424 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G VGD L + R+ L+ D +AR G F +L + A + Sbjct: 425 NYGHLVGDQCLKLVAERLRRRLRGEDTIARSGGEEFVAVLGELKSRQDAYRVAEDLLYVF 484 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVSS 699 P + + + ASIG A + +S++ +NA++AMY +K G S +SS Sbjct: 485 HEPFLVEGYRLELPASIGVALYPDDGTDASDLWRNADIAMYRSKKSGGNRFTFVSDEISS 544 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ ++ + A++ + Y P L D + G+EAL++ HP+ G I F+ Sbjct: 545 AAAEANDLELMMRTALKEGGFEVYYQPQY-LEDGTLCGMEALLRLHHPRSGMILPDRFIP 603 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AE+ +I I ++LE +AR ++W QA +P + I +N++ + ++ +Q +++ Sbjct: 604 VAEDSGLIMPIGNWVLEEVARQFMAW-SQAGLPQVRIAVNVSPLQFMHSDFLGHVQRVLA 662 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 ++ ++L +E+ VM N E + L +G+ ++DDFGT S L +L +P Sbjct: 663 RSGMPAELLELEVTETTVMRNIEEIARQMRELAALGVHFSVDDFGTGYSSLRHLHQLPIK 722 Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 T+K + S + TE +I+++I+ +A ++ ++A+ + + + L + CD Q Sbjct: 723 TLKVDRSFVERITETNGTYSIVQAILSLAHSLGMQVVAEGVERKDQFEVLKALQCDVFQG 782 Query: 938 SHVASPLGFNSILKLLKERFPLVK 961 + PL +I LL+ + ++ Sbjct: 783 YLFSYPLEAGAIPPLLETQTAGIR 806 >gi|254785192|ref|YP_003072620.1| eal and ggdef domain containing protein [Teredinibacter turnerae T7901] gi|237685815|gb|ACR13079.1| eal and ggdef domain containing protein [Teredinibacter turnerae T7901] Length = 709 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 144/611 (23%), Positives = 264/611 (43%), Gaps = 27/611 (4%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 D I G V V+L+ I + + + + R + S D +W Sbjct: 98 WFSVDKIPTLNKLGEVTGVMLV----INDISESVVKERALEESDARYKAFIANSADAIWC 153 Query: 421 WDI-VRDRVTTTPD--IATILGLAS-GSMHGPIRNWLPYIHINDRDNF----------RT 466 +++ T +P + IL A + + + H D Sbjct: 154 YEVYPPVDTTLSPQLQVEQILKRAILVECNETLARFFGVTHTRDVIGLPLSRSGSLSSYQ 213 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + +F+ EF +M + NG ++R GI DIT+Q+ Sbjct: 214 DVRAFIDNGYRLENKEFSRVDRTGMCGYMQSSAIGVV-ENGLLMRAWGITRDITDQRTHT 272 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + A D+LT +PNR + + + D +M+ID+D++K+IND LG Sbjct: 273 DRMEYLANHDSLTLLPNRTLLYSTMEQTIANAKNDQ--LMALMIIDLDRFKEINDTLGHR 330 Query: 587 VGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD VL + R+ + ++ARL G+ F + L N+ + S+ P Sbjct: 331 AGDSVLQQVGPRLEGEMVELEGLVARLGGDEFAVFLPRVRNAHQALVLGHRFIDSLGEPF 390 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDR 704 + VTASIG + + S +++ A++AMYHAK G V R Sbjct: 391 EIETFRTEVTASIGISMFPDQGRDVSTLMRYADVAMYHAKRALKGVAVYDPEFDPHSPTR 450 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + I L A+ S+L L + P I L+ + G E L++W HP+ G + +F+ I E+ Sbjct: 451 LEIMGALRRAIRESQLELYFQPKIDLLTHRVTGFEGLLRWHHPEIGTVPPVDFIPIVEKS 510 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + +++ R WR + + I + +N+++ ++ D L ++ L+++ Sbjct: 511 NLIYPLTCWVMAESIRQCAIWRREGHD--ITVAMNLSASNVTDERLLAELRQLLTQYDLP 568 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 +++ +ES +M +PER+ L ++ +G+ L++DDFGT S L+YL +P T+K + Sbjct: 569 GHCLEMELTESTIMNDPERALTALKKIAALGVHLSIDDFGTGYSSLAYLKRLPVGTLKID 628 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + E+ I+ S I +A N+ +++A+ + + + L CD Q +A Sbjct: 629 KSFVMDMLIDEQDEIIVNSTINLAHNLGLSVVAEGVESQEIYQRLQDHKCDSAQGFLIAR 688 Query: 943 PLGFNSILKLL 953 P+ + L Sbjct: 689 PMPAADATRWL 699 >gi|303249428|ref|ZP_07335649.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio fructosovorans JJ] gi|302489170|gb|EFL49141.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio fructosovorans JJ] Length = 728 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 147/585 (25%), Positives = 255/585 (43%), Gaps = 29/585 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQS----------LAVLGSG-DIVWDWDIVRDRVTTTPD 433 T ++ + Q + +R L + S D D + P Sbjct: 146 TAVEVAIFKHRTEQKLKRSEQRYRHLFSGMLNAFLLLELSPCDACADGRGALRILEANPS 205 Query: 434 IATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 + GL + P I LD+ R F AD Sbjct: 206 FERMTGLCRSEVIDRALTEVFPGIEP-------FWLDTLGETARSGRSVRFENSLADCDM 258 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 ++ P S + D+TE+K E + +F D LTG+PNR LDR+ Sbjct: 259 FFLAQAYSPQSGQ------VAVVLEDVTERKSGEERLRYQSFHDALTGLPNRALCLDRIA 312 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 ++ + N ++ +DID+++ +ND LG GD++L + R+ + D +AR+ Sbjct: 313 RAIERARRRSNYLYALLFLDIDRFRLVNDSLGHLFGDELLKRVGERLRHEVPQLDTVARV 372 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F +++ S A+R+ P + +R+ VTAS+G + E Sbjct: 373 GGDEFVLLVEEIAASADALHIVKAVRERFRTPFVIAKRQFYVTASMGVVLGPADYERPEE 432 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL 730 +++NA +AM A+ G V F S + + ++ +L LA+++ E L Y PI L Sbjct: 433 LMQNAAIAMNEARKSGWGRVRVFEWSMRQRAERVMDLETNLRLALDHREFILHYQPIFDL 492 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 G+EAL++W P + EF+ AE+ +I + +L R + R Sbjct: 493 KTLAPCGVEALVRWRRPTGELVPPDEFIPAAEQSGLIIPLGAMVLAEACRAMGRLRRGGL 552 Query: 791 MP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 P F+ +N++++ EL + + + +P +KL +ESV+M +PE + L L Sbjct: 553 GGNPFFMSVNLSARQFTQPELVKQVVRTLRDERMAPGDLKLEITESVLMEHPESAMLKLR 612 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKN 908 LR+ G+ + +DDFGT S L+YL P DT+K + ++G E I+RSII +A + Sbjct: 613 GLREFGVGIGIDDFGTGYSSLAYLQRFPIDTLKVDRGFVSGMDEYGNRVIVRSIIGLAHS 672 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + ++A+ I E +++L +GCD Q A P+ ++ L Sbjct: 673 LGCDVVAEGIETESQLRDLAGLGCDLGQGFFYARPMDEAALTSFL 717 >gi|95930120|ref|ZP_01312859.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans DSM 684] gi|95133814|gb|EAT15474.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans DSM 684] Length = 814 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 133/442 (30%), Positives = 230/442 (52%), Gaps = 5/442 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 +S + + A D LTG+ NR LDRL ++ + V++ID+D+++ IND L Sbjct: 367 QSEQRLEHLATHDELTGLANRTLLLDRLDHAIEEGMRQHHA-VAVLLIDLDRFQVINDSL 425 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + +R+ + ++ D ++RL G+ F ++L NN + + K I+ Sbjct: 426 GHDQGDRLLCQIGKRLCQHVRSTDTVSRLGGDEFALVLGDLNNEESLIPLMQDLLKEISS 485 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRS 702 P ++ I VTASIG + + + S +L+NA+LAMY +K G S ++ Sbjct: 486 PCHIDNHHIVVTASIGISLFPNDGNDSITLLRNADLAMYQSKRHKGDFTFYSSDMNQHAV 545 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + +++DL A+E EL L Y P + L +IVG EALI+W HP G +S ++F+ +AE Sbjct: 546 KILELEKDLRQALERGELLLHYQPKVSLQSGKIVGCEALIRWQHPLRGLVSPADFIPLAE 605 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I I ++LE+ + IS Q +P I + +N++S+ LC+ + ++ T Sbjct: 606 ETGLIVPIGTWVLEQACQQAIS-WQQQQLPTITMAVNLSSRQFRHGNLCDVVDTILETTT 664 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P + L +ES++M +PE + + L++ G+ L+LDDFGT S L+YL P D +K Sbjct: 665 LHPDLLDLEITESMIMDDPEGAVQTMIALKERGVLLSLDDFGTGYSSLNYLRRFPVDCLK 724 Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + + A+ SI+ +A ++ T +A+ + + L + CD +Q Sbjct: 725 IDASFIRDVAQDSSSAAVAVSIVDIAHHLGLTTVAEGVETVEQLDFLEKCHCDILQGYLY 784 Query: 941 ASPLGFNSILKLLKERFPLVKN 962 + PL LL+ L + Sbjct: 785 SRPLPAEDFTSLLRSNLDLKQT 806 >gi|115524460|ref|YP_781371.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] gi|115518407|gb|ABJ06391.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] Length = 779 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 151/629 (24%), Positives = 287/629 (45%), Gaps = 20/629 (3%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 A + GL M + ++ ++ + + + + A +Q + Sbjct: 142 LARETGLVALFGLLMGGVTYVAFRLLPLRIIDRTLKDLKTASRLIQRKNEALETQNQALQ 201 Query: 402 SDGERQ---------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + + + G GD W + I + + ++ +L S + Sbjct: 202 ATKDALKNRSDQLIEAQLLGGIGD--WSYRIGESTIDWSAELFALLRFDRESYSCDRDDI 259 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + + V R + + + R D ++ + +S+G ++ + Sbjct: 260 ISRYVGDSAKRVLQAQADIVRTREVQ-TIDVKFRRGDGTVGDFVVVSKAAIDSDGALIGF 318 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 G DITE+K++ E + A+ D LTG+PNR F + L+ VM++D Sbjct: 319 KGTIQDITERKQAEEQLQKLAYYDPLTGLPNRSLFRRKAEDALERY-LHGGGEAAVMLLD 377 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K++ND LG A GD++L + I +L +LARL G+ FGII+ +I Sbjct: 378 LDRFKEVNDSLGHAAGDELLDKVAHVISRVLGNRHLLARLGGDEFGIIVTDALGRAEIEA 437 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + +++ PI L E+ + S+G A T S++L+NA+LA+Y AK G Sbjct: 438 LARDIITAVSEPIALSRGEVAIGTSVGIAGIPRDGDTISDLLRNADLALYRAKEAGRGRF 497 Query: 693 ESFRVSS--FRSDRVMIKEDLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F ++M+ DL A+ ENS L + + P + ++ ++VG EAL++W HP Sbjct: 498 QFFEEDMSTTVQHKLMLGRDLRRAITENSGLSVHFQPQVDILSNKVVGFEALMRWTHPSL 557 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 GN+S EF+ IAE +I + L++L A+ +W D P + +N+++ + + Sbjct: 558 GNVSPDEFIPIAESSHLICDLGLWILRESAKQAKAWIDA-GETPRQVAVNVSASQIWHTD 616 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCS 868 + ++ +T P + L +ES+++ + E R R +L L++ G+ L LDDFGT S Sbjct: 617 FVNDVIGVLRETALPPHLLCLELTESLLVDHAEGRVRKVLMELKRAGVVLALDDFGTDYS 676 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L YL +PFD +K + + G + +L+ I+ + + + ++ + + ++ Sbjct: 677 SLGYLVQLPFDKLKIDRIFINGIADSDRVRNLLQGIVALGRGLRMQVVMEGVERAEELDI 736 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +GCD +Q A P L + +E Sbjct: 737 IRTLGCDVVQGYIFARPSSAAGALAIARE 765 >gi|253574406|ref|ZP_04851747.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon 786 str. D14] gi|251846111|gb|EES74118.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon 786 str. D14] Length = 575 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 120/560 (21%), Positives = 249/560 (44%), Gaps = 17/560 (3%) Query: 407 QSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 A+ G + + V I G + +L Sbjct: 21 LLQAIDRMGVGLAITNPNLPDNPLVYVNQGFEKITGYKREEVLNRNLRFLQG--KETNKE 78 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--- 520 ++ + G + D W I P+ ++ G +L +IG+ D+T Sbjct: 79 HLAVIRKAIKE-IGAATVTIKNYKKDGSTFWNQFVISPILDAEGHLLYFIGLQFDVTREV 137 Query: 521 -EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 +Q+ S E + + D T + + F + + L LSA ++ V+ I++++++ I Sbjct: 138 EKQQASTEQLRQLSHFDPATHLMSSNYFKELMYAEL-LSAQAEHTTAAVICINLNRFRLI 196 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 N+ G + G+++L + R+ + R + F +++ + + L I A+ + + Sbjct: 197 NESHGESKGNELLRQVAERLRRSFPDGTPMCRNFADEFFVLVSNITDPLYIHTLALDLNQ 256 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRV 697 ++ P L V +G + + ++L++AE+AM AK G H + Sbjct: 257 ALREPYTLSGEAFQVGFGMGISLYPDDGSDIHQLLQHAEMAMKEAKKEALEGPHYYDQYL 316 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 ++ +++ + A+ E L + P + +E+ G EALI+W P G I + F Sbjct: 317 MDRLKTQITLEKKMIRALAEGEFELHFQPKVNASTKELTGFEALIRWKDPVQGYIPPNSF 376 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + IAEE I + ++L + W+D P + + +N+++ + ++ + Sbjct: 377 IPIAEENGFIVELGEWVLREACKANKRWQDA-GHPKLPVSVNVSAVQFRHPQFLRTVEQV 435 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +++T +P ++L +ES ++ + + L L++ GISL++DDFGT S + YL +P Sbjct: 436 LNETGLAPQYLELEVTES-LLNDHVMIKDTLTALQQKGISLSVDDFGTGYSSIHYLKSLP 494 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + + + + +E+ ++LRSII + K++ T++A+ + + + L + GCD I Sbjct: 495 VQVLKIDRTFVQETPCSERDNSLLRSIIQLGKSLGMTVLAEGVETKAQFEFLQQNGCDQI 554 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + + PL +I LLK Sbjct: 555 QGYYYSRPLNAEAIEGLLKS 574 >gi|218438864|ref|YP_002377193.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece sp. PCC 7424] gi|218171592|gb|ACK70325.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece sp. PCC 7424] Length = 865 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 138/431 (32%), Positives = 230/431 (53%), Gaps = 9/431 (2%) Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 + D+LT +PNR+ F+ +L + D++ V +DID++K IN+ LG GD VL+ Sbjct: 426 YYDSLTYLPNRRFFVSQLQKMNKHQKADNSELTAVYFLDIDRFKVINEGLGHEAGDFVLL 485 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 +R+ L LAR+ G+ F I L S + + + A +++ + P +EI Sbjct: 486 ETAQRLQGQLNNKAQLARVGGDEFAIWLNSLVSIDEATEIANYLQQILNQPFFWKGQEIY 545 Query: 654 VTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKED 710 + SIG A + S E+L++A +AMY AK+ G H E F + +R+ I+ D Sbjct: 546 TSVSIGIAFNRTGAKFNSEELLRDANIAMYQAKNSGKVHYEMFASGMREQVINRLQIETD 605 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L +++ E L Y PII L +I G+EAL++W K G IS EF+ IAEE +I + Sbjct: 606 LRRSIKQQEFQLFYQPIISLKTGKIAGVEALVRWKSVKRGFISPGEFIPIAEETGLIIPL 665 Query: 771 NLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 ++L+ + W Q + PP+FI +N++ + L + +Q ++ + +K Sbjct: 666 GEWILQEACSQMRQWHQQFSQNPPLFISVNLSGRQFSQPNLVQQVQYILETINLERNTLK 725 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES++M + E + LL RL+ +G+ L++DDFGT S LSYL P DT+K + S + Sbjct: 726 LEITESMMMNDVEAAIDLLRRLKDLGLRLSIDDFGTGYSNLSYLHRFPIDTLKIDQSFVR 785 Query: 890 GST-----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 ++ I+R++I + N+E +IA+ I E + L +GC+Y Q + A PL Sbjct: 786 RMNSQESQDRYAQIVRTVIMLGHNLELDVIAEGIETEEQMHILKSLGCEYGQGYYFAKPL 845 Query: 945 GFNSILKLLKE 955 + +LLK+ Sbjct: 846 PSPEVTELLKK 856 >gi|153938294|ref|YP_001389725.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum F str. Langeland] gi|152934190|gb|ABS39688.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum F str. Langeland] Length = 892 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 241/452 (53%), Gaps = 11/452 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + ++ + +N + Sbjct: 447 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTIN---SYENEKFA 503 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R LL + + RL G+ F II+ + + Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKNKIGRLGGDEF-IIVQNITSI 562 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ I E ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 563 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 622 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E +EL + + PI L +I+ +E+L++W Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 682 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 IS ++F+ +A+ + I I+ ++L + W+ Q P+++ +NI+ K + Sbjct: 683 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 740 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L++ GI ++LDDFGT Sbjct: 741 KDKNFVDNVLNILRTTKLEPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 800 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ I+A+ + Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIVAEGVETIEQ 860 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954 ++ L +GCD+IQ +++ PL + K ++ Sbjct: 861 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 892 >gi|307322047|ref|ZP_07601425.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83] gi|306892336|gb|EFN23144.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83] Length = 712 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 132/583 (22%), Positives = 259/583 (44%), Gaps = 35/583 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ L + + + + + G V +D + + + A + GL Sbjct: 117 LARVKGRLDLQQAQKQLDQRNMQFATTLENIGQGVCFFDADQRLILSNRRYAEVYGLPPE 176 Query: 444 SMHG--PIRNWLPY--------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 + + + +D + + ++ + + Sbjct: 177 MIKPGMTLSEITELRYAVGACPVVPHDE---YLAWCDAINSKSSP--QDWSMELKSGKAI 231 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + S+G ++ DITE + + I A D LT +PNR + +L T Sbjct: 232 RVHHE----RTSDG---GWVSTHEDITEHRNAERQIARLALHDPLTDLPNRAALKQKLDT 284 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +L+ + V+ +D+D++K++ND+ G VGD VL +R+ +ARL Sbjct: 285 LLEQHQK-QGTQFAVLCLDLDRFKEVNDLFGHHVGDQVLCLAAKRLCATAV-GAFVARLG 342 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F ++ +E ++ A A + ++ + I + S+G A + + ++E+ Sbjct: 343 GDEFMVL--AEADASYAAQLADLIITILSEDAEIEGTRIRMGTSLGVAIFPADGDNAAEL 400 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 + NA+ A+Y AK G F + +R ++ DL A+ +L +VY P + Sbjct: 401 MGNADAALYRAKADGRGTARFFEPQMDKWLRERRALQRDLQAAISQQQLSIVYQPQADI- 459 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 +++G EAL++W+HP GNI S F+ IAEE ++ I ++L R+ +W Sbjct: 460 GGDVIGFEALLRWNHPTRGNIPPSVFIPIAEESSLMIEIGEWVLREACREAAAWPR---- 515 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +N++ +L +++++ +T P R++L +E V++ + ER+ LG L Sbjct: 516 -KLSVAVNLSPVQFKHGDLDRLVKSVLIETGLEPERLELEITEGVLIDDLERAISTLGHL 574 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIE 910 + +G+ + +DDFGT S LSYL PFD +K + S + + AI+R++I + + ++ Sbjct: 575 KALGVRIAMDDFGTGYSSLSYLQSFPFDKIKIDQSFVRNIGLSQSSAIIRAVIGLGRGLD 634 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 IIA+ + + LTR CD +Q V P + K + Sbjct: 635 LPIIAEGVESTDQLAFLTRESCDQVQGYLVGRPRPISDYAKYV 677 >gi|325293586|ref|YP_004279450.1| GGDEF/EAL transmembrane sensory box protein [Agrobacterium sp. H13-3] gi|325061439|gb|ADY65130.1| putative GGDEF/EAL transmembrane sensory box protein [Agrobacterium sp. H13-3] Length = 794 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 144/665 (21%), Positives = 268/665 (40%), Gaps = 23/665 (3%) Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 S + +I + + + G V+ + + T+R+ + Sbjct: 140 LSRTELAFITIFILAILTTVLAAIAGNRFMVIRPLMRL-------AAAIEATRRVGSRHH 192 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 + + F +Q L I ER++ + +++ D Sbjct: 193 VDWRSKDEIGR-LAKSFNEMQTQLEKEEL--EIKHAHERKTEIYNRTPAMLFSLDRYDRI 249 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + G + G N+ IH +DR F + R Sbjct: 250 AAVSDYWVQATGYDRARILG--LNFADLIHPDDRSLFLQRKAAQHSPDAAHAGITVRFHC 307 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D +I + + + N Y+ + D+TE ++S + A D+LTG+ NRQ F Sbjct: 308 MDGSVMDALILEKALDSGNAHQGTYLCVMTDVTELRQSEKRNRQQAISDHLTGLFNRQGF 367 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 L + + + + + ID+D++K IND LG A GD VL T +I LL D Sbjct: 368 EAILDVQIRDADRNGS-ELACLFIDLDRFKAINDNLGHAAGDAVLREFTLKIEPLLTPLD 426 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 +RL G+ F I+L + + F + + P + I ++ASIG A + Sbjct: 427 SASRLGGDEFAILLAGDKVEERAQLFCERICTMLDTPFEIEGNSIRLSASIGMAIYPLHA 486 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 ++SE+L+NA++AMY K G N + F + + ++ D+ A+ ++ + Sbjct: 487 ASASELLQNADMAMYTRKRTGKNGSQIFDSSIMDRAREHAELERDIAQALSDNWFEAYFQ 546 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 PI L + G EAL++ +HP+ G +S + + +AEE I I +L++ ++ Sbjct: 547 PIQDLATGQTAGFEALLRLNHPEKGLLSPATIISLAEENGTIHRIGNVILDQSIANLARL 606 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 M ++ +N + L + ++ + P R+ + +E+V+M + + R Sbjct: 607 SHLPGMEQSYVAVNFSPLQFE-PGLPTRIAGVLHRYGILPKRLIIEITEAVIMKDDPQIR 665 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-------RIAI 898 +L + ++G + LDDFGT S LSYL P D VK + S + + Sbjct: 666 AILNAIHQLGCRIALDDFGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVEIRQRSRML 725 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + I ++ + ++IA+ + E + LT +G DY Q + A P ++ L Sbjct: 726 VEGIAAISHKMNCSVIAEGVETEEQKELLTVIGADYGQGYYFARPQPIERLIAALNADNG 785 Query: 959 LVKNT 963 + Sbjct: 786 ADRAA 790 >gi|91201200|emb|CAJ74260.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 1069 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 132/576 (22%), Positives = 244/576 (42%), Gaps = 15/576 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 I + + + R S V S + D P +A + Sbjct: 502 AIFFEVVDNLALQLGRLIERKRADERIRKLSQVVEQSPASILITDKEGIIEYVNPKLAEL 561 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 G + G L + +R + ++ + + Q E + + +W + Sbjct: 562 TGYTGDEIIGRTPRMLKS-GKTSNETYRNLWNTIISGK--EWQGELLNKKKTGELYWEHV 618 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 I P+ N G + Y+ I DITE KK +L A +D LT + NR+ F + L + Sbjct: 619 HISPIRNHKGHVTNYLAIKEDITEHKKFETQLLNMATRDPLTNLFNRRRFQEELQYWIAQ 678 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + ++ +D+D +K +ND LG GD++L+ L + L+ DI AR G+ F Sbjct: 679 TLRY-GATGALLFLDLDNFKYVNDTLGHQAGDELLIRLAEMLRSRLRDTDIFARFGGDEF 737 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I+L + K A + + + + VT SIG + + +L NA Sbjct: 738 AILLPY-TDREKAGLIANEILE-LTREHTFEHSK--VTFSIGIVIFPEHGRDAETLLVNA 793 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LAMY AK G N F ++ + A++N L P+I L ++ I Sbjct: 794 DLAMYRAKESGRNRFCVFSQEQKTHIEAQINWEKRIRNALDNDRFVLHLQPVIDLSNKNI 853 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 +G EAL++ K I +EF+ IAE +I+ I+ +++ R Q + IF Sbjct: 854 IGYEALLRMLGEKDELIFPAEFLSIAERFGLIRDIDRWVVCSAIRLAAE--QQFSDRGIF 911 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + IN++ K D EL ++ + + P I +E+ +M N ++ L L+ + Sbjct: 912 LDINLSGKAFADTELLGIIKHQFNTSGTKPGSIVFEMTETAMMENMIAAQDFLAALKHMD 971 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913 +LDDFG+ S +YL ++ D +K +GS + ++++I+ +A ++ Sbjct: 972 CRFSLDDFGSGFSSFNYLRHLTVDYLKIDGSFINDLPNNPVDQHMVKAIVELAHGLKKRT 1031 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 +A+ ++ L ++G +Y Q +++ P + + Sbjct: 1032 VAEFADSGDTLQLLRKLGVNYAQGNYIGKPRSVSEV 1067 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 35/137 (25%), Gaps = 11/137 (8%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + +L + + G+ + + + D + + P I G + M G Sbjct: 207 RQLLDSEGENIGLEENELKFANLASVINDGIVVLNENGHVTHWNPAAEKIFGYSEEEMKG 266 Query: 448 ----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + R ++ E + + + Sbjct: 267 KNILNVIGGAEHTEPEMR-----FFNNIKAGCIINETIEITGVKKNKSEFPLEASFSTL- 320 Query: 504 NSNGDILRYIGIANDIT 520 G + I I DI+ Sbjct: 321 -QIGRQIHIIAIFRDIS 336 >gi|54293281|ref|YP_125696.1| hypothetical protein lpl0329 [Legionella pneumophila str. Lens] gi|53753113|emb|CAH14560.1| hypothetical protein lpl0329 [Legionella pneumophila str. Lens] Length = 740 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 143/568 (25%), Positives = 267/568 (47%), Gaps = 22/568 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453 ++ + + S D + D+ V + + M + L Sbjct: 180 TESLQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIMKKTSESQLIQY 239 Query: 454 ---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 ++ + ++ Y FR + + + +P + Sbjct: 240 MSTQLLNSEQHAQHVKEFSIHIDDSSIQI-YHFR----NGKV--VECCSKPHR-VGPQTV 291 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + DITEQ + E + A D LT +PNR +DR+ + A ++ ++ Sbjct: 292 GRVWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISSYARH-KMKFAILF 350 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 D+D++K IND L GD +L ++ +R+ L++ D LARL G+ F ++ S N+ +I Sbjct: 351 FDLDRFKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQI 410 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + KS P ++ ER+I + SIG + + + T + +L NA++AMY AK RGGN Sbjct: 411 AGVAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGN 470 Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + + ++ DL A+ + E +L+Y P + EI +EALI+W+HP+ Sbjct: 471 QFSFYTEKLNKKTNQQFQLELDLQKAIIHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQ 530 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G I +F+ AE +I I ++L + I +WR +P I + N+ASK L Sbjct: 531 KGIILPLDFIPTAESSGLIVPIGEWVLRETCKQIGTWR-TMGLPEIRVACNVASKQLRQR 589 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + ++ L+ + P ++L +E+V++ + + + +L+ +G+ + LDDFGT S Sbjct: 590 DFPAMVKDLLKEYSVEPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNS 647 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+ L + D++K + S + + AI+ +II +A+++ IIA+ + + +K Sbjct: 648 SLNLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKF 707 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954 L + C+ IQ ++ P+ I KLL+ Sbjct: 708 LKKRRCNDIQGFLMSKPIPPEEIEKLLQ 735 >gi|218888167|ref|YP_002437488.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759121|gb|ACL10020.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1076 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 144/624 (23%), Positives = 275/624 (44%), Gaps = 30/624 (4%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 ++P ++ L+ V + A + + R + + + + D Sbjct: 455 VRPGFSAEDRRLLELVSGHVADALAARRDLGRRALDEV-RYRASFMDAVAGMALLDAGGR 513 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV-------------G 473 + G G + G + + + Sbjct: 514 LLAVNRAFEAAFGYPDGVLAGT--DLRDLLPPDVAGQALREFGGLWLSVSAIRAAAGMGE 571 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI---------TEQKK 524 G ++ + AD + WM +R + G + + + Sbjct: 572 AAGGMVETSWPFLRADGEKRWMQQSLRILPGEAGHPPCALLQVTPLEGGNGRAGRDPATR 631 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 E + AF D LTG+PNR LDR+ + L + D+ R V+ +DID++K +N+ LG Sbjct: 632 DEERMTQTAFHDVLTGLPNRVLLLDRVESALKRARRHDHYRFAVLFLDIDRFKVVNESLG 691 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD++L + R+ L+ D LAR G+ F ++L ++ ++ ++ ++ P Sbjct: 692 HRAGDELLRLFSDRVLPCLREVDTLARCGGDEFAVLLDDVEDTAEVGTIVERIQDALRTP 751 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRS 702 + + E+ + ASIG ++ ++L++A+LAM+ AK G E F Sbjct: 752 FPVHDTEVYMAASIGVVVRARQYASAEDILRDADLAMFRAKESGKGRYELFDEDVPSAAP 811 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 D++ + +L A+E E+ L + P++ L I GLEAL++W+HP G +S SEF+ +AE Sbjct: 812 DKLRRENELRRAMERGEIELYFQPVVSLRTARITGLEALVRWNHPDLGLLSPSEFIPLAE 871 Query: 763 ELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E +I ++ +LE + + R + +NI+++ + E ++I ++ Sbjct: 872 ESGLIYHLDRHVLELGCASVRALRERAGPAAEFALNLNISARSFRRWNMVESYSSVILES 931 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 +P ++L +ES+++ + L + +++G+SL LDDFGT S L+YL P D + Sbjct: 932 GCNPLDVRLEITESLLLTGVDAVTDKLWKFKELGVSLVLDDFGTGYSSLNYLRQFPMDMI 991 Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + E++ A I++SI+ + + + ++A+ I + L +GC Y Q Sbjct: 992 KIDKSFTSRVHEEKAAYGIVQSIVSLGRGLGLGVVAEGIERPEQAEVLLELGCLYGQGFL 1051 Query: 940 VASPLGFNSILKLLKERFPLVKNT 963 + PL F+ KLL+ R PL + Sbjct: 1052 YSRPLPFDRTAKLLERRCPLPLSA 1075 Score = 48.4 bits (114), Expect = 0.006, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 40/139 (28%), Gaps = 15/139 (10%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 +G V +D + +A +LG + + + + + Sbjct: 137 AGIGVCVFDPAGQLLYMNGRMADLLGCGPEGIPSLFCA--RLVGLEGTADVLALFLRVAS 194 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI--TEQ-KKSLEGIL 530 + R D + + + ++ G L + + + TE+ ++ + Sbjct: 195 GQDEGGSVRKRFLRGDGGTMLASVTLYAVHDALGLPLHVVHLVRPLERTERSERGGDRSE 254 Query: 531 CNAFQDNLTGIPNRQSFLD 549 A R+ F D Sbjct: 255 ALA----------RRRFDD 263 >gi|54302402|ref|YP_132395.1| putative signal transduction protein [Photobacterium profundum SS9] gi|46915824|emb|CAG22595.1| putative signal transduction protein [Photobacterium profundum SS9] Length = 722 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 116/434 (26%), Positives = 218/434 (50%), Gaps = 6/434 (1%) Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T K+ + A D LTG+ NR+ + L ++ + N ++ D+D +K+I Sbjct: 283 TIVKQKTHELEKFALYDYLTGLANRRLLNEHLERVIQQTEYCGN-SAALLSFDLDDFKRI 341 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G VGD VL ++ R+ ++ DI+AR+ G+ F ++L + +++ A + Sbjct: 342 NDSQGHEVGDGVLQQISHRLNSVVNKSDIVARIGGDEFTVLLSTSDSAFDAGRIAERLIN 401 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 I+ PI L +E++V+AS+G S S +L+NA++AMY AK G + F + Sbjct: 402 VISEPIFLNNKELSVSASVGITMIPSDGNDVSTLLRNADMAMYSAKKSGKRNYHFFNKAL 461 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + ++ I+E L A+ + L Y PI ++ EALI+W+HP+ G + F Sbjct: 462 QKKALYKMSIEEGLDTAISKKQFVLHYQPIFSFDSNKLCCYEALIRWNHPREGLLYPERF 521 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + IAEE IK I ++++ + I + + +N++ + D +L E ++ + Sbjct: 522 IGIAEESGKIKDIGYWVIQEVCDVIKMHQLHTGD-SYRVAVNLSPRQFNDPDLLENIRRI 580 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 I +++ +ES +M N E + L + +++GI++ +DDFGT S L+ L +P Sbjct: 581 ILNVGIDARSLEIEITESTLMENVESAIHTLHQFKELGITVAIDDFGTGYSSLAMLKRLP 640 Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + + I++++I MA ++ ++IA+ I + L + GCD+ Sbjct: 641 VDKLKIDRSFVKDLSSNNSDQKIVQALISMAHTLQISVIAEGIETQEQFNLLQQYGCDFG 700 Query: 936 QDSHVASPLGFNSI 949 Q + P+ + Sbjct: 701 QGYLFSKPVPITEL 714 >gi|114319993|ref|YP_741676.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] gi|114226387|gb|ABI56186.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alkalilimnicola ehrlichii MLHE-1] Length = 1023 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 141/600 (23%), Positives = 261/600 (43%), Gaps = 18/600 (3%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT---GYFSQGIFSDGE-RQSLAVLGSGD 416 + D + +V + Q++ A ++ ++ E R + A + Sbjct: 429 QYDYTLTLGGTERTFTTVVRPVRGADNQYLGALAQVRDITEARTTEAELRIAAAAFETHL 488 Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 + D I G + G L ++R ++ + + Sbjct: 489 GMMITDAEGRIQRVNDTFCRITGYQQAEVLGQTPRLLSSGRHDER-FYQRMWAQVREH-- 545 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 G + E R + + I + + +G+I Y+ +DI+++K++ + AF D Sbjct: 546 GSWEGEIWNRRKNGEIFPEWQTITAVRDDSGEITHYVATLHDISDRKEAERQVHRLAFYD 605 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 LTG+PNR+ L+RL L + ++ +D+D +K +ND G GD +L +L+ Sbjct: 606 TLTGLPNRRLLLERLAHCL-RGNHRSRRQGALLYLDLDHFKAVNDAHGHGTGDRLLQALS 664 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA-----MRKSIAMPINLLERE 651 R+ ++ D LARL+ + F ++L + A + K + P+ + Sbjct: 665 GRLSNSIRESDTLARLNADDFLVLLTDLAEETQAAARGAEAAAEALIKQLEAPLVMDGEP 724 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709 I + ASIG + + + ++ AE AM+ AK G N + F ++ Sbjct: 725 IHLHASIGITLFRNHETKPEVAVQEAEQAMHQAKQSGRNAICFFDPLMQADMLRRVHLER 784 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L AV + L L + P + D +I+G EAL++W HP+ G I F+ IAE+ +I Sbjct: 785 GLRRAVHDGGLTLHFQPQV-GPDGDILGYEALLRWPHPEQGPIGPGVFIPIAEQSRLIIP 843 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 + ++L+ AR + +W + + +NI+S ++L ++ + T R+K Sbjct: 844 LGRWLLQAAARQLAAWARDPATRALTLSVNISSVQFRHDDLVAAVREALETTGAPAERLK 903 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES++M P++ + RLR +G+ +LDDFGT S L+YL +P D +K + S + Sbjct: 904 LEVTESLLMEEPDQVCATMERLRALGVHFSLDDFGTGFSSLAYLQRLPLDELKIDQSFVQ 963 Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 AI+ SII +A+++ +IA+ + E L GC Q +P Sbjct: 964 SLEQAPAADAIVGSIIGLARSLSLHVIAEGVETETQRTRLAAHGCHRYQGYLFGAPAPLA 1023 >gi|258655313|ref|YP_003204469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nakamurella multipartita DSM 44233] gi|258558538|gb|ACV81480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nakamurella multipartita DSM 44233] Length = 1039 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 139/616 (22%), Positives = 250/616 (40%), Gaps = 29/616 (4%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + + + + + V +I T + A Q F D + Sbjct: 427 GKPLWAQHTAAVFRTVEGAPIQMGVQVIDVTEARMA-ARRQAHQARFLDA-----ILENI 480 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLAS---------GSMHGPIRNWLPYIHINDRDNFR 465 G V D + L + + I ++R Sbjct: 481 GSAVVACDAQGQVNLINLCTREMFNLPPAPWMPPPGIEQPPVYHADGITPIPPDERP--- 537 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L + R E ++ + + +G +L + + +D+TE+++ Sbjct: 538 --LSRSLRGELVR-DVETVFGEPGADRRIVLSSAHRLQDEDGAVLGAVLVMHDVTERRRV 594 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 ++ A D LT + NR DRL + ++++D+D +K +ND LG Sbjct: 595 ESALIRQALHDPLTDLANRALLGDRLDQAIARQQRQPEP-FALLLLDLDGFKLVNDSLGH 653 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD VL+++ R+ L D +ARL G+ F ++L +S +A A + + P+ Sbjct: 654 QAGDQVLITVATRLRTSLWAEDTVARLGGDEFAVLLERTCDSQALA-IAEQLLGVLRRPV 712 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 + IT AS+G A T T+ ML+NA+LAMY AK G V+ +R S S Sbjct: 713 QVHAHTITPDASVGVALSTGD-DTAESMLRNADLAMYAAKDAGKGVVQVYRASMHESVLQ 771 Query: 706 MIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + +L LA++ + + Y PII L+ ++ G EAL++W HP G+I S F+ +AE Sbjct: 772 RLIMDAELRLAIDEQQFSVHYQPIISLISGQLRGFEALLRWQHPVRGDIPPSSFIPLAES 831 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTL 822 +I + ++L WR + + +N++ + + + L + ++ Sbjct: 832 SGLIVPLGGWVLREACSQAARWRRLFPPTRSLTMSVNLSVRQIQEPTLVATVLEALTDAG 891 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P ++L +ES + +L L GI L +DDFGT S LS L +P D VK Sbjct: 892 LEPGDLQLEITESTL-DQRNLILGVLHELHDKGIKLAIDDFGTGYSSLSRLHTLPVDRVK 950 Query: 883 FNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + A ++ + + MA ++ A+ I + L GCD Q ++ Sbjct: 951 IDRSFIELLAGSNPAPLVAATVAMAHSLGMQTTAEGIESADQLPMLRMYGCDDGQGYYLG 1010 Query: 942 SPLGFNSILKLLKERF 957 P+ + L+ + Sbjct: 1011 RPMSAEAATALIHTQL 1026 Score = 70.0 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 38/152 (25%), Gaps = 10/152 (6%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + +A Q + ++ G +W I P +LG Sbjct: 330 RDLTRSMAELDDVQSLLQRA--FEDSLTG---GLW-TSIDGRIHRANPAYCRMLGRPESD 383 Query: 445 MHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + W + + L E R R D + W Sbjct: 384 LVGTRLPTW---VDPASAARAEEMFTRVGTIDGAGLPVELRYRKPDGKPLWAQHTAAVFR 440 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 G ++ D+TE + + A Sbjct: 441 TVEGAPIQMGVQVIDVTEARMAARRQAHQARF 472 >gi|170754902|ref|YP_001780010.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum B1 str. Okra] gi|169120114|gb|ACA43950.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum B1 str. Okra] Length = 892 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 130/452 (28%), Positives = 241/452 (53%), Gaps = 11/452 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + ++ + +N + Sbjct: 447 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTIN---SYENEKFA 503 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R LL + + RL G+ F II+ + + Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKNKIGRLGGDEF-IIVQNITSI 562 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ I E ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 563 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 622 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E +EL + + PI L +I+ +E+L++W Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 682 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 IS ++F+ +A+ + I I+ ++L + W+ Q P+++ +NI+ K + Sbjct: 683 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 740 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L++ GI ++LDDFGT Sbjct: 741 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 800 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ IIA+ + Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 860 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954 ++ L +GCD+IQ +++ PL + K ++ Sbjct: 861 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 892 >gi|27377700|ref|NP_769229.1| hypothetical protein blr2589 [Bradyrhizobium japonicum USDA 110] gi|27350845|dbj|BAC47854.1| blr2589 [Bradyrhizobium japonicum USDA 110] Length = 618 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 139/554 (25%), Positives = 247/554 (44%), Gaps = 18/554 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 Q + E V V+ + GL M G Sbjct: 56 EQDLLRTREFLDTIVENIPIAVFAKCAKDSRYILLNRAGEDYYGLPREQMLGRTP---EE 112 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPMSNSNGDILRYI 513 I D D V + E + + + R + + NG + Sbjct: 113 IFPADVARVVNEQDRRVVDTGEPMFLEGHLLEVGVNGHDRVVNSRKLLIRDGNGTPQYVV 172 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 G+ D+TEQ S I A D LT +PNR +F L L+L+ V+ +D+ Sbjct: 173 GVIEDVTEQLASQARISHLAHHDALTDLPNRSAFNAELDERLELAQEA-LTSFAVLSLDL 231 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K++NDV G VGD +L+ +AR+ G+ F I++ + Sbjct: 232 DRFKEVNDVFGHPVGD-MLMRAAADRLAAEADGAFVARIGGDEFMILMPDNARREDMLTL 290 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + + I + + + V S+G A + + ++ +L NA+ A+Y AK G V Sbjct: 291 AERLVEVIGKELEIDDYLSQVGVSVGIAVYPDDGVDAATLLANADSALYRAKREGRARVR 350 Query: 694 SFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + + DR +++ DL A+E ++ + + P R+ D E++G EAL++W+HP G Sbjct: 351 FFESETDQELRDRRLLQHDLRQALEQNQFLVHFQPQARM-DGEVIGFEALLRWNHPTRGF 409 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + F+ +AEE +I I ++L R+ SW P+ + +N++ + +L Sbjct: 410 VPPDRFIPLAEENGLIVQIGEWVLREACREAASWPR-----PLQVAVNLSPVQVQAGDLE 464 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + ++ +T +P+R+++ +E V++G+ R+ LL RL+ +GI + +DDFGT S LS Sbjct: 465 RSIHQILLETGLAPTRLEVEITEGVLIGDFTRALNLLRRLKALGIRIAMDDFGTGYSSLS 524 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL PFD +K + S ++ T + I+R+++ +A + +IA+ + E L R Sbjct: 525 YLQSFPFDKIKIDRSFISNLEATPQSAEIVRAVLSLAHALNIPVIAEGVETEAQRAFLAR 584 Query: 930 MGCDYIQDSHVASP 943 C+ +Q V P Sbjct: 585 EACEEMQGYLVGRP 598 >gi|254491242|ref|ZP_05104423.1| hypothetical protein MDMS009_1574 [Methylophaga thiooxidans DMS010] gi|224463755|gb|EEF80023.1| hypothetical protein MDMS009_1574 [Methylophaga thiooxydans DMS010] Length = 1085 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 135/738 (18%), Positives = 279/738 (37%), Gaps = 17/738 (2%) Query: 230 GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSG 289 +S + + I + L L +F+ + + K ++ Sbjct: 215 WILSAAPLGGWSDMPRDVWQKRILIYGVAMTLFLLLALFIRFIFAASMANQKFRHLIEGS 274 Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349 +L + A + + Sbjct: 275 PIPYLLLNANREVSFINQAFSDNYGYQLEHVQGGESWWKITAHPQRYRDEFKAYLAHLHH 334 Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 + + N + +L + T +L Y E+ Sbjct: 335 GDKTQPPSSMELEINTL--HGQTKVALLSTSFLQDTFDSELLLVVYDITVRKEAEEQLRF 392 Query: 410 ---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + + D P I G + + G + L + + F Sbjct: 393 SSRVFNQAQEGIIITDTSGTITDVNPAFCEITGFSREEVLGKGPDILNS-GKHSPEFFSK 451 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + S + + G Q E R + + + ++ I +++ +G ++G+ +DIT+ K+ Sbjct: 452 MWQSIIEH--GYWQGEVWNRRKNGELYAELLTISAITDDDGQSRHFVGLFSDITQTKQQQ 509 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 E + A D LT +PNR F DR + + S + + +D+D +K +ND G Sbjct: 510 ETLEMMAHYDVLTKLPNRVLFADRFSQAMAHSNRTE-TMLAICFLDLDNFKPVNDTYGHE 568 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + R+ + ++ D ++R G+ F I+ + + + +S+A P N Sbjct: 569 VGDQLLIEVAVRLRKNVRDEDTISRFGGDEFAILFRDIESQSECEFMLRRIHESLAQPYN 628 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + + I ++AS G + +L++A+ MY AK G N + F + ++ Sbjct: 629 VNDTRIDISASSGVTFYPQENADLDTLLRHADQTMYQAKLAGRNTYKLFNPAKNRQNIEK 688 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + + L +E + L Y P + + E+ G+EALI+W HPK G +S F+ + E Sbjct: 689 QQWLQQIRLGLEQDQFRLFYQPKVNMRTGEVFGMEALIRWVHPKKGLLSPIHFLPLIEGS 748 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LY 823 + + +++ + + W D+ I + +N+AS L + ++A ++ Sbjct: 749 EIEIDVGNWVMRSAMQQLQVWHDEGKE--IEVSVNVASLHLQSAHFIDDVEAALATHADI 806 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRK-IGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 ++L E+ +G+ ++ R +G+S+ LDDFGT S L++L ++ T+K Sbjct: 807 DSRYLQLEIVETSALGDIGAISKVIKLCRDLLGVSIALDDFGTGYSSLTHLRHLTASTIK 866 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + + I+ + +A+ +IA+ + L GC+ Q + Sbjct: 867 IDQTFVRDMLDDPQDYTIVDGVSGLAEAFNRQVIAEGVETTESGLMLLMSGCERAQGYGI 926 Query: 941 ASPLGFNSILKLLKERFP 958 A P+ +L L P Sbjct: 927 AKPMPAEEVLIWLNAYKP 944 >gi|66047994|ref|YP_237835.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63258701|gb|AAY39797.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|330970974|gb|EGH71040.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 897 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 152/571 (26%), Positives = 271/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L DILAR + N F +++ + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDILARFASNEFAVLIDN-TDQEAGHATATQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ LK R+P + Sbjct: 868 DVGQGYLFDRPIPGQELIEKLK-RYPRRPSA 897 >gi|330829142|ref|YP_004392094.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565] gi|328804278|gb|AEB49477.1| PAS:GGDEF domain protein [Aeromonas veronii B565] Length = 978 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 142/636 (22%), Positives = 280/636 (44%), Gaps = 22/636 (3%) Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV--ILIGFTVIQHVLAT 393 +L + + + + I Q L+ L L+ QH A Sbjct: 351 PVRYPKATRLLALNASAYIGIPLHGQSGAPIGQITLLLDTPLEEPEQLLDLLSSQHERAA 410 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + D R + + D + D + + I G + G L Sbjct: 411 IELKRLATDDALRLAEVAFNTHDGLIVMDHNGIILKVNHSFSRITGFGEVEVIGHSIRKL 470 Query: 454 PYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + D ++ ++ + E R D + + + + + G++ Sbjct: 471 RPTYYGDHLKEDVSRTVNE-----QEFWLGEERCLHKDGHLFPVRLMVNGVKDEQGELSH 525 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 +I DIT++K++ I A+ D+L G+ NR+S L L S + ++++ Sbjct: 526 FICSFYDITQEKEAARHIEQLAYYDDLCGLHNRRSLNHILQQTLSAS---NGQWGALLLV 582 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-- 629 D+D +K IND LG A GD +L ++ +R EL + + AR+SG+ F ++ Sbjct: 583 DLDNFKSINDSLGHACGDLLLQAVVQRFRELPQDNLVQARISGDEFALLFTQLGQGEVTA 642 Query: 630 ---IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 FA + P ++ + ++ +AS+G + ++ ++ +++ A+ A + AK Sbjct: 643 KILAEHFARELMGLFRTPFDIGDHKLHCSASVGISLFSGNETDHLVLMQQADTATHMAKR 702 Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G H F + + +R+ + +L A+ + EL L Y P R+ + + G+EAL++W Sbjct: 703 AGQGHYVFFSEAMAQHEKNRLTLTNELRDALRHHELQLHYQPQYRVDNGSLSGIEALLRW 762 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 + EF+ IAEE +I I ++++ W ++ P + +N++++ Sbjct: 763 QRSDGTMVPPGEFIPIAEETSLILEIGYWVMKTACAQYSFWLNRGLQIP-HLSVNVSARQ 821 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + ++ ++ T PSR+ L +ESVV+ N + S + +L+++GI +++DDFG Sbjct: 822 FHTQGFVQQVEYILRDTGVPPSRLLLEVTESVVLENRQESIARMRQLKELGILISIDDFG 881 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL +P D VK + S + +E+ AI+++I+ +A+ T+ A+ + E Sbjct: 882 TGYSSLAYLRDLPADEVKLDRSFIQTLVHSEQDRAIVKAILDLAQVFRFTVTAEGVEEEA 941 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + L +GC + Q + PL + +LL R P Sbjct: 942 QLAILKALGCQHYQGFLTSRPLTVKGLEQLLGSRAP 977 >gi|261821440|ref|YP_003259546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pectobacterium wasabiae WPP163] gi|261605453|gb|ACX87939.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pectobacterium wasabiae WPP163] Length = 722 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 131/580 (22%), Positives = 242/580 (41%), Gaps = 15/580 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ L + R S D + + +L Sbjct: 152 ASLVMDKLEMRRLELARKASQVRFENIANTSPDTILCVNEKGMITFWNAAAEKMLEYRDD 211 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G + I + L + + E V+A + + + Sbjct: 212 EIIGQN---INRIVPDAFIVQLNHLVTDRDSLMKGVTLELNVQAKSGSLVPVELSVS--M 266 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + D + Y I DITE++++ E + A D LTG+ NR L T L + Sbjct: 267 WEDNDNVSYGAILRDITERRRNEERLFLLAHMDPLTGLANRTLLTSNLETALK-----NE 321 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +M++D+D +K +ND LG + GDD+LV + ++I ++ D++AR+ G+ F ++ Sbjct: 322 PAVCIMMVDLDGFKDVNDSLGHSSGDDILVHVAKKIKATVRSGDVVARMGGDEFALLFPG 381 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ A + I+ + + + +I ++ASIG + +T ++L +A+LA+Y Sbjct: 382 LSDKKVAGKIAEQIIHEISQAMIIDDHQINISASIGAVLYPEYGVTVQDLLTSADLALYQ 441 Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N F + L A E E + Y P ++L EIVG EAL Sbjct: 442 AKSEGRNCYRFFTRELLEVFQAKHAFQLEFVRAYEQHEFEMFYQPQVKLATNEIVGAEAL 501 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G + + F+ E + + +++E R W Q + I IN+ Sbjct: 502 LRWRHPERGLLGPAAFLTALENGPWAERVGDWIVETACRQAAEWC-QVSNSYFRISINLF 560 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 S L + + +++T PS ++L +E++++ E L LR GI + D Sbjct: 561 SAQFRTGMLAQKIMGALARTGLQPSSLELEITENIILRYDENMLQPLKTLRDAGIGIAFD 620 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 D+GT + LS L P +K + + + + AI+R+I+ + K+ +IA+ + Sbjct: 621 DYGTGYASLSMLKNYPVTRLKIDQTFVRTMCESPPDAAIVRAILYLGKSFGLGVIAEGVE 680 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + L GC+ Q P+ +LLK P+ Sbjct: 681 TLEQSERLRGKGCEEAQGYLFGHPMPAEEFTQLLKLNKPI 720 >gi|307821994|ref|ZP_07652226.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum SV96] gi|307736560|gb|EFO07405.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum SV96] Length = 662 Score = 482 bits (1242), Expect = e-133, Method: Composition-based stats. Identities = 148/719 (20%), Positives = 287/719 (39%), Gaps = 79/719 (10%) Query: 254 RACSEIALSSSLI--IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM-VTASI 310 I + ++ +F + R H + + AC+A V I Sbjct: 3 FDLLTILTAYLIVDAVFAIAFAVTVRRHPNLAGPGWWLAACMAFFTGFLGICLRDVIPDI 62 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 I +A+ ++ ++ G++G+ W L ++ + + ++ A Sbjct: 63 VSIVIANSLILTGGVCVWIGIRGFFGLR---QHWSLFALFVLPAATLLNLFMEVWPSVSA 119 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + +ILIG I+ + + + VT Sbjct: 120 RQITMSTFIILIGLFTIRDI--------------------------------VRQRSVTL 147 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 + + ++G + + I R + Sbjct: 148 SMETNLLIGFLGAETVIHVIRLITLIM---RPTAISSYILSPEQPDRVF----------- 193 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 W+ I R + + ++ + + + A QD+LT +PNR+ L+R Sbjct: 194 -LMWLFITGTA---------RLLIMVTLVSAR--LQDELNQLATQDSLTQLPNRRFLLER 241 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L +D+ D + ++++D+D++K +ND LG + GD++L + RI L+ D++A Sbjct: 242 LKHGIDVERRDGK-QLALLMLDLDRFKAVNDSLGHSAGDELLQQVADRIQSRLRDVDMVA 300 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL---------EREITVTASIGFA 661 RL G+ F ++L + A A + ++ P L E+ + ASIG + Sbjct: 301 RLGGDEFIVLLEDIAHPEDAARVAEEIVADLSRPFQLPRSNETDHEPGHEVQIGASIGIS 360 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSE 719 + +++ A++AMY AK G F R+ ++ L +E E Sbjct: 361 LYPQHGDNPELLMEQADIAMYEAKQAGRGCFAYFSEELTIAVRKRIALEGRLRRGIEQQE 420 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L + Y P I + IVG EAL++W P G I+ F+ IAEE +I AI ++L Sbjct: 421 LRVFYQPQIDIASGRIVGAEALVRWQSPTEGLIAPINFIPIAEETGLILAIGEWVLRETC 480 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 R W P+ + +N++ + ++ + ++++T + +++L +ES +M Sbjct: 481 RQGQCWLAD-GFLPLTLAVNVSPQQFRRCDINALVAEVLAETGFPAGQLELEMTESGLMD 539 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897 N +++ +L LR GI L +DDFGT S L+YL P D +K + S + + + Sbjct: 540 NQDKAVEVLNNLRAQGIRLAIDDFGTGYSSLAYLKRFPLDVLKIDKSFIDDIPHLQDDME 599 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I +II M + ++A+ + + + L + GCD Q + P+ +LL+ + Sbjct: 600 ITATIIAMGHILGFKVLAEGVETQEQLDFLRKKGCDAYQGYFTSKPVPAEDFAELLRRQ 658 >gi|222084396|ref|YP_002542925.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] gi|221721844|gb|ACM25000.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] Length = 778 Score = 482 bits (1242), Expect = e-133, Method: Composition-based stats. Identities = 146/763 (19%), Positives = 283/763 (37%), Gaps = 39/763 (5%) Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254 +IG + + +F ++ A + + F + + Sbjct: 25 LIGSLATMLLFSRAQECRSQQRSYWVVAAAFASGVSIWATHFIAMLAYDGGLPISYGLSL 84 Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPM 305 + + F W + + + + I Sbjct: 85 TILSVVFAILGSWFAIAV--AFEWDNTISFAIGGMLMALGIASMHFTGMQAIQAPAILAH 142 Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365 + A L F+ + M G+ R L +L M+ + Sbjct: 143 DPSRTLAAIAAGAALGALSFVAFFRMGGHRRIALGTLLLVLAICALHFTAMSGVTLTPDP 202 Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 ++ A + +++ I ++ + + S + + Sbjct: 203 TVEAATLSIDRIVLAGIIMAASTGLVLIALGAAFVDRHLTDLRGFANASLEGMLIVR-DG 261 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFR 484 + I G + + G + R L++ + GR + E Sbjct: 262 RVIDANERFVAISGWSLQRLIGKSPGDFLTLDAAMRPEEAASLETALLSESGRSIPVEVV 321 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 +R +I R + + D+TE++++ + I A D LT +PNR Sbjct: 322 IRT-------IIYRGHECR---------VLVVRDLTERRQAQQMIEHLAHHDTLTDLPNR 365 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 F +R+ L ++ V +D+D++K INDV G A GD +L + + + Sbjct: 366 AFFDERIRQALQMA-EHKGTEAAVFCLDLDRFKAINDVFGHAEGDRILCKVADILRRSAE 424 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D +ARL G+ F II ++ A + A ++ V S+G A + Sbjct: 425 DSDTVARLGGDEFAIIQPGQSQPEGARRLAERILAEFAAEMDTARDPTAVGVSLGIAIYP 484 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722 ++ ++ NA++A+Y KH F + R I+ DL A+ +L++ Sbjct: 485 RDGHSAEQLYCNADIALYRVKHTSRGFACFFDAGMDETVRTRRQIESDLRQAILRRQLHV 544 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y PI+ + +I G EAL++WDHP G I F+ IAEE I + ++LE+ + Sbjct: 545 DYQPILDAQNGQISGYEALLRWDHPVRGVIEPDTFIPIAEESGSIVQLGEWVLEQACIEA 604 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W D+A I +N++ + L + + ++++T P R++L +E+ +M + Sbjct: 605 ARWHDKA-----SIAVNVSPVQFMIPTLYDQVAQILARTGLDPHRLELEITEAALMRDRV 659 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILR 900 L RL ++G+ + +DDFGT S LS L PFD +K + S +I+R Sbjct: 660 VVLSTLQRLHRLGVRVVMDDFGTGYSSLSNLRAFPFDKIKVDRSFTGALEHDPAARSIVR 719 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 +II + ++ ++ + + E + + GC +Q + P Sbjct: 720 AIIGLGHSLNMPVVTEGVETESQRRIVVEEGCAQLQGFLLGKP 762 >gi|83644835|ref|YP_433270.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83632878|gb|ABC28845.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 999 Score = 482 bits (1242), Expect = e-133, Method: Composition-based stats. Identities = 144/593 (24%), Positives = 252/593 (42%), Gaps = 33/593 (5%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGER------QSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 + A I +R S AV S V + V Sbjct: 403 VEERTEALAQANQELKLEIAEREQRELSLRLLSKAVESSRSGVIITNADGIIVYVNNAFL 462 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQF 492 + G + + L + R +F ++ E A Sbjct: 463 AMTGYDRMQVFDKHISSLE-------ERVCFPRLDQINFRELPEPMIRDELHCYDASRNQ 515 Query: 493 HWMIIRIRPMSNSNGD-----------ILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 HW I I P+ + Y+ DIT KKS + + AF D+LTG+ Sbjct: 516 HWAQISIFPIYEQAARNYGVFRPAPEKVSHYVVTCEDITLLKKSKDEMEQLAFYDHLTGL 575 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 +R F RL + + D ++ +M IDID +K+IND G GD+VL ++ RI + Sbjct: 576 ESRLLFKLRLENAITRAVRDKSM-IALMFIDIDHFKEINDNYGHDAGDEVLKTVAARIKQ 634 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 ++ D +AR+SG+ F +IL + A +R+++ P +E V ASIG + Sbjct: 635 NVRKNDTVARISGDEFTVILSDIRGHVDARRVAQGIRRTLNRPFKFAGKEYIVGASIGIS 694 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSE 719 + E+LKNA+ AMY AK G N ++ F S + ++ ++ + + Sbjct: 695 IAPDDGVELDELLKNADTAMYQAKRNGRNDIQFFSHSMNEEAKKKQTLEAEMIQGLSKKQ 754 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y P+I L +++VGLEAL++W+HP G I F+ +AEE +I + +++ + Sbjct: 755 FRLDYQPVIDLETKKLVGLEALLRWNHPSQGVIYPDHFIPLAEETGLIVELGKWVINEVI 814 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 R + + IN++++ L D L + +++ P I+L +E+ ++ Sbjct: 815 SATRELRKM-GFSDVGVAINVSARQLRDKGLIADIGRIVAANRNEPCNIQLELTEATIIE 873 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897 E+S + L K+G +T+DDFG S +S L +P D +K + S + Sbjct: 874 ELEQSNRSINDLNKLGFGITVDDFGAGYSSMSNLKQLPIDCIKIDKSFVHNMLRKGDDAE 933 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 I++++I MA N++ ++A + +K L C Q + + + I+ Sbjct: 934 IVKAMISMAHNLKLNVVAVGVEDAEQVKFLKENKCFLAQGFYFSKAGDLHEII 986 >gi|313683553|ref|YP_004061291.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] gi|313156413|gb|ADR35091.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Sulfuricurvum kujiense DSM 16994] Length = 693 Score = 482 bits (1242), Expect = e-133, Method: Composition-based stats. Identities = 122/445 (27%), Positives = 228/445 (51%), Gaps = 6/445 (1%) Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 I + + + + A D LTG+ NR F +RL ++ S N R ++ +D Sbjct: 247 IALLEQHNQLRAQKNALQYQATHDALTGLANRVLFSERLEYAIEKSKIR-NTRMALLFVD 305 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K+IND LG GD VL +T+R+ + + LAR G+ F +I+ N +++ Sbjct: 306 LDHFKEINDSLGHEAGDKVLTIVTQRLKHTIDKEESLARFGGDEFTVIIEELQNLEEVSL 365 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + PI + E+ V SIG + + + T+ ++LK A+ AMY AK+ G N+V Sbjct: 366 LADKILNVLLAPIAVDHHELYVGCSIGISLYPDNGDTTQDLLKYADAAMYAAKNEGRNNV 425 Query: 693 ESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + +RV+++ L ++N E + + P + + + G+EAL++W+ P G Sbjct: 426 RYYSSEMTTRALERVVMETSLRAGLKNGEFIVYFQPQVNGKENRLFGMEALVRWNSPTVG 485 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 +S + F+ IAE +I ++ ++++ I W + P I + +N+ K L + Sbjct: 486 LVSPAVFIPIAESTGLIVELDRYVMKHAMTQIAQWYKEGLNPGI-LSMNLTMKQLQQKDF 544 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 E ++ L+++T S ++L +E +M +P+ + +L + +IG+ + +DDFGT S L Sbjct: 545 IEYLKTLLAETGCSIEWVELEVTEDQIMIHPDEAIDILREISRIGVKIAVDDFGTGYSSL 604 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL +P + +K + S + E+ +AI ++II MA+++ +IA+ + L Sbjct: 605 SYLKKLPINKLKIDQSFVRELPDDEEDVAITKAIIAMAQSLNLDVIAEGVETAEQKDFLV 664 Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953 + GC IQ + P + I +L Sbjct: 665 QNGCINIQGYFYSKPKPADEIRTIL 689 >gi|302878539|ref|YP_003847103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581328|gb|ADL55339.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 927 Score = 482 bits (1242), Expect = e-133, Method: Composition-based stats. Identities = 139/573 (24%), Positives = 254/573 (44%), Gaps = 32/573 (5%) Query: 397 SQGIFSDGERQSLAVL--GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 ++ + R S ++ D + V A G M + Sbjct: 365 TRELQISEARFRQMFEHHASPMMLID-PLGGAVVDVNQAAAEFYGYRIAEMQAMNIAQIN 423 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D + + ++ A + + + P+ + L + Sbjct: 424 LQTEED--------CRPQQTKGNCFFFSHQL--ASGEVRLVEVHSSPV-EVDSRPLLFF- 471 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +DITE++ E + AF D LT +PNR+ LDRL L LS T +M +D+D Sbjct: 472 IVHDITERRHLEEKMHDLAFYDLLTKLPNRRLLLDRLEKAL-LSGTRSRHHSALMFLDLD 530 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLK 629 +K +ND+ G +GD +LV + RI ++ D AR G+ F +++ + + Sbjct: 531 HFKVLNDLHGHDIGDQLLVEVANRILGCIREQDSAARFGGDEFVVMIEDLSENLSDAVNQ 590 Query: 630 IADFAIAMRKSIAMPINLLERE----ITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 A +R ++A P L E ++SIG + + ++LK ++AMYHAK Sbjct: 591 ADSVAEKIRCALAAPYLLKRGEEVISHHCSSSIGVTLFRDHEENLEQLLKWTDMAMYHAK 650 Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + F +R ++ DL A+E + L Y + D G E L++ Sbjct: 651 DAGRNVIRFFDPVMQTAIENRAALENDLHTALEERQFELFYQIQVD-RDGRAEGAEVLLR 709 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP+ G +S ++F+ +AE+ +I I ++L+ + I W+ + I +N+++K Sbjct: 710 WRHPQRGLVSPAQFIPLAEDTGLIVPIGEWVLDTVCAQIAKWQ--GEQRNLVIAVNVSAK 767 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + E +Q +I + SP+ +KL +ES+V+ N + + + L+ G+S ++DDF Sbjct: 768 QFRQSNFVELVQQIIQRHQVSPALLKLELTESLVLDNIQDTIDKMKVLKAFGVSFSMDDF 827 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S LSYL +P D +K + S + + ++++I+ + N E +IA+ + E Sbjct: 828 GTGYSSLSYLKQLPLDQIKIDQSFVRDIATDKTDLVMVKTIVDLGVNFEMDVIAEGVESE 887 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + + L + GC Q + P+ + L+K Sbjct: 888 VQLGLLKQCGCSRFQGYLFSKPVPVEAFELLIK 920 >gi|237748749|ref|ZP_04579229.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes OXCC13] gi|229380111|gb|EEO30202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes OXCC13] Length = 870 Score = 482 bits (1242), Expect = e-133, Method: Composition-based stats. Identities = 145/568 (25%), Positives = 262/568 (46%), Gaps = 43/568 (7%) Query: 408 SLAVLGS-----GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--------- 453 +LA+ S D ++ D + GL+ + G + +L Sbjct: 319 ALAIASSLFENNRDGIFIADQTGRITVVNYQFTRMTGLSQEQIMGNHQWYLQPGISDSSC 378 Query: 454 -----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 I D + + +F R R++ + + I+ + + + Sbjct: 379 YSQLCDVIICTDHE----EMATFEKNREQRIEPTY-------------LTIKIVRDMDEK 421 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I+ YIG+ DI++ + D LTG+PNR LDRL L + + R V Sbjct: 422 IISYIGVLLDISQNDFLEDHTRYMIEHDFLTGLPNRILLLDRLGQTLIAAERNHR-RAAV 480 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 M +D+DK+K IND LG A+GD +L + +R+ + ++ D ++R G+ F I+L + Sbjct: 481 MFLDLDKFKHINDTLGHAIGDRLLQQVAQRLTQCVRKNDTVSRQGGDEFVILLSDIGEAD 540 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A A + +++ + E+++T+SIG A + +LKNA+ AMYHAK G Sbjct: 541 DAAMVANNIMHTLSQNYQIENYEMSITSSIGIALFPEDGKEIDTLLKNADTAMYHAKENG 600 Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N + F +R ++EDL A++N + +L Y PII + ++ + G+EA ++W+H Sbjct: 601 RNAYQFFNAEMNLHLIERSQLEEDLKTALKNGDFFLEYQPIIDMHNQHMTGVEAFLRWNH 660 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P++G + S F+ IAE +I I +++ + W+DQ + +N++S L Sbjct: 661 PQFGILMPSRFLSIAENTGLIGPIGEWVINTACKQAKKWKDQGFSK--TVSVNLSSIQLK 718 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 +L ++ + + +P ++L +E + N LL LR +G+ + LD+FG Sbjct: 719 QKDLLGTIKNALEENDLTPDFLELQITEGSITENIRTVIDLLNELRNMGVKIALDNFGNG 778 Query: 867 CSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 CS +S+L +P + +K + S + G+ + +II MAKN+ + A + Sbjct: 779 CSSISHLKRVPIEKIKIDPSFIRALGTQSSDADVAGAIIAMAKNLNLKVSAGGVETTDQA 838 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952 L +GCD Q ++ L I +L Sbjct: 839 NRLKEIGCDEYQGYVISPTLPAKEINRL 866 Score = 63.0 bits (152), Expect = 3e-07, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 8/144 (5%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR------VTTTPDIATILG 439 + + +Q + D + +AV S +W + + + + I G Sbjct: 173 EKKKLGREEARAQQLQEDSQLYRMAVERSEIGLWKASLSKKQAMEEMHFHFSDKGGDIFG 232 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 S + G ++ IH + + R L S + + G E R+ + F W+ + Sbjct: 233 FVSFADIG-FTQFMDTIHSDSVEKIRGALRSAINSKIG-FDIEIRINKPNGDFAWVNWKC 290 Query: 500 RPMSNSNGDILRYIGIANDITEQK 523 + + + GIA DIT K Sbjct: 291 FLIEENQTGAILLEGIALDITSHK 314 >gi|309779911|ref|ZP_07674665.1| sensory box protein/GGDEF domain protein [Ralstonia sp. 5_7_47FAA] gi|308921270|gb|EFP66913.1| sensory box protein/GGDEF domain protein [Ralstonia sp. 5_7_47FAA] Length = 1056 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 137/580 (23%), Positives = 264/580 (45%), Gaps = 13/580 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +I V + I E SL + + + + D +LG ++ Sbjct: 481 TLALISDVTYRSALTHTIREQKEFFSLLMGSTVEAICGLDQNGCCTFANAACERLLGYSA 540 Query: 443 GSMHGPI-RNWLPYIHINDRDNFRTIL---DSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G + + H + +S + E +D + Sbjct: 541 QELAGKPMHALIHHTHEDGSPYELAACQIQNSIASGAHVHVDNEV-FWRSDGTSLPVEYW 599 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 P+ +G + I + +E+++ + + A D+LTG+ NR SF+ L T L + Sbjct: 600 AYPIV-RDGQVAGSIVTFIETSERRRQQDELRRRATFDDLTGLLNRPSFVTALETRLQQA 658 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + P V ++D+D +K+IND LG A GD +L + R+ + L + RL G+ F Sbjct: 659 DASER-HPVVAILDLDGFKEINDSLGHATGDQLLRGVAERLTDQLGPHADVGRLGGDEFA 717 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++ A+ +SI P ++ ++ + S+G A + + + +L++A+ Sbjct: 718 FVVDESYGPPIATRI-EAVMESIRRPFSIAGLDLAINGSVGAARYPGAGLDVDTLLRSAD 776 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +AMY AK G + RV + + +L A++ E L + P I L G Sbjct: 777 VAMYVAKREGHGFTFTDRVDAGTPRPF-LLSELRRALQEDEFILHFQPTIPLQGLPHFGF 835 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W+HP+ G + EFM + E +I + +++ + + F+ + Sbjct: 836 EALIRWNHPRLGIVGPGEFMPMVEVSDLIHPLTEWVIASAVSRFKTIIESWPNA--FVAV 893 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ ++L++ + +Q L+ + + + +K+ +ES VM +P+R+ L L +G+ + Sbjct: 894 NVSMRNLINQKFTSSVQYLVEQNRFPVNCLKIEVTESAVMADPDRTLRALNELHGLGVRI 953 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 +DDFGT S L+YL +P D +K + S ++G + AI+ SII +A ++ ++ A+ Sbjct: 954 AVDDFGTGYSSLAYLQKLPVDDLKIDRSFVSGLSGSQPSKAIVHSIISLAHSLGLSVTAE 1013 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I E D++ L GCD+ Q ++ P+ F+++ LK R Sbjct: 1014 GIESEADMRILRAAGCDFGQGYYIGHPMPFDAVHDWLKSR 1053 >gi|222111077|ref|YP_002553341.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY] gi|221730521|gb|ACM33341.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax ebreus TPSY] Length = 900 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 123/604 (20%), Positives = 251/604 (41%), Gaps = 23/604 (3%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 ++ A V + + ++ + + + D++++ D Sbjct: 304 LLGAAFSLLAGWFVGQQVNARQRAMALAREMTRELRRTRDELEATLNAVPDLLFEVDAQG 363 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 A ++G + ++ G R + LD Y G + Sbjct: 364 GIHHYRSARADLIGTRAQALVG--RTLGDVLPPAAAAECMAALDEAAEY--GYSEGRQYS 419 Query: 486 RAADNQFHWMIIR------IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 HW + P + + +I ++ D+T + ++ + A+ D LT Sbjct: 420 LDIGGSQHWFELSVACKQGGAPQTGAGPGQRHFIALSRDVTRRHEAEAAMYRLAYFDALT 479 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR+ L RL L + + + ID+D +K+IND G VGD +LV + R+ Sbjct: 480 GLPNRRLLLQRLQDALVTAQQQGGM-GALFYIDLDNFKEINDARGHGVGDGLLVQVAARL 538 Query: 600 GELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITV 654 + + +ARL + F +++ + + A +R+ + P +L Sbjct: 539 QDAAGPQETVARLGSDEFVMLVPRLGDGPSVAREQACRRAQQLRECLDAPYDLGGVHYGS 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712 T SIG + + ++L+ A+ AM+ AK RG N V F +R+ + +DL Sbjct: 599 TGSIGVTLFPKNGEAVEDLLREADTAMFCAKDRGRNQVCFFEQDMHAAAQERLALLQDLK 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 AV+N L P + +++G E L++W HP+ G + ++F+ +AE+ +I + Sbjct: 659 SAVDNDALLTYAQPQVDAA-GQLIGAELLLRWPHPQRGFVPPAQFIPVAEQAGLIVRMGA 717 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++++ + Q + I +N++ + + E ++A + T + + L Sbjct: 718 RVIQQACATLAELHQQGR--ALSISVNVSPRQFRQADFVEQVRAALHSTGAPAALLTLEV 775 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890 +ES+++ N + + + L +G+ ++DDFGT S L+YL +P +K + S + Sbjct: 776 TESLLVENWQDTARRMHELVALGVRFSIDDFGTGYSSLAYLKRLPLYELKIDRSFVQDAP 835 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 S AI+++I+ +A+++ ++A+ + L C +Q P L Sbjct: 836 SDANDAAIVQAILSVARHLRLRVVAEGVETRQQADFLIAHHCHGLQGYLFGLPQPLRDWL 895 Query: 951 KLLK 954 LK Sbjct: 896 AGLK 899 >gi|85373779|ref|YP_457841.1| hypothetical protein ELI_04760 [Erythrobacter litoralis HTCC2594] gi|84786862|gb|ABC63044.1| hypothetical protein ELI_04760 [Erythrobacter litoralis HTCC2594] Length = 737 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 134/557 (24%), Positives = 250/557 (44%), Gaps = 18/557 (3%) Query: 411 VLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT--- 466 + SG +W D + T L + G L +D D + Sbjct: 41 IEQSGIGWIWASDADGRLIYLTEGACQHLDRGPEELLGTPLVELFETDPDDPDGGTSRPL 100 Query: 467 --ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 L + + +++ R A+D + W + P + +G+ Y G A DIT + + Sbjct: 101 NFQLKAHNKLKDLTVRFALRKSASDVKQTWWSLTAHPKFDGSGNFCGYRGNAKDITVEYE 160 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 A D+LTG+ NR RL IL + +M++D+DK+K++ND +G Sbjct: 161 RKLVDTKLAEYDSLTGLANRHYMNKRLENILA-AYKTAKRSCALMMLDLDKFKQVNDTMG 219 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD VLV + R+ ++ + RL G+ F +IL ++ + + A + K ++ P Sbjct: 220 HPAGDAVLVQASERLRAIIGDRGEIGRLGGDEFQVILPDIDDRGTLGEIAEKIIKIVSQP 279 Query: 645 INL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701 + ++ + S+G A + E++K ++LA+Y AK+ G + Sbjct: 280 YPVEDDKRAIIGTSVGIAIAPYDGVEKEELVKGSDLALYAAKNGGRGQFRFYHADLKDEE 339 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +R + +DL A+ EL L Y P++R D ++V LEAL++W H + G++S F+ +A Sbjct: 340 QERQALLDDLRQALAAGELQLNYQPVVRADDNQVVCLEALMRWHHEERGSVSPDVFIPVA 399 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I + + L + D + W + + +N+++ E + +++ T Sbjct: 400 EESDLIIQMGEWALRQACEDALQWPKS-----VRVAVNVSAVQFASKSFPETVANVLAHT 454 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 R++L +ESV +G+ + + L+ +G+ L LDDFGT S LSYL PFD + Sbjct: 455 GIDADRLELELTESVFLGDTDATEETFKMLKSLGVRLALDDFGTGYSSLSYLRSAPFDKI 514 Query: 882 KFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 K + S + TE I+ +I+ ++ + + + ++ + G IQ Sbjct: 515 KVDRSFVDSCTEQEKNSAKIIAAIVGLSNALGMETTVEGVEAFDQLEIVRSKGAKLIQGW 574 Query: 939 HVASPLGFNSILKLLKE 955 A + +IL+++ Sbjct: 575 LYARAMAQETILQMMAS 591 >gi|134291167|ref|YP_001114936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia vietnamiensis G4] gi|134134356|gb|ABO58681.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Burkholderia vietnamiensis G4] Length = 913 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 129/556 (23%), Positives = 249/556 (44%), Gaps = 22/556 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRV---TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 +S A+ G+ V + P TI G S + G L Sbjct: 366 RSRALDAIGNGVLITRVEAGEEIVEYANPAFETITGYTSAQVVGRDHAGLARAGQQGL-L 424 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 F + + G R R AD W + + P+ + + +I + +D+TE Sbjct: 425 FEQMAQALAAGSAG--ARLLRSRRADGSAFWGQLYVAPVRDD---LTYHICVISDLTELI 479 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 S + ++ A +D LTG+PNR + + + + ++ +D+D+ K IND L Sbjct: 480 DSRDQLVRQARRDALTGLPNRATLRELIEQAVAERRA-----FALLFMDVDRLKDINDSL 534 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + +R+ + + R G+ F +L ++ ++A + +++ Sbjct: 535 GHGAGDRLLREVAQRLSGCVGEDGTVTRYGGDEFVAMLGRPDDGDRLAALLRRIARALER 594 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P+ + + + V SIG A + + + + +LK+A+LAMY AK RG N VE F+ S + Sbjct: 595 PVQIGDAQSRVQLSIGVACYPADGLDAETLLKHADLAMYQAKARGRNTVELFKPSFAEAA 654 Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I L A+E+ L Y P I + + G+EAL++W + G +S + F+ +A Sbjct: 655 ERRIALSHRLRAALEHDGFELAYQPQIDVRTSRVSGVEALLRWHDAEMGTVSPAIFIPLA 714 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E++ +I + ++L + W D P + + +N++ + L + C ++ ++ + Sbjct: 715 EDIGLIGQLGEWVLRSVCGQAKRWADTL--PALRVSVNVSPRQLASGDFCSVVRRVLDAS 772 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 +++L +E ++ + L L +IG+ + +DDFGT S LSYL D + Sbjct: 773 GLPAHQLELEITEGALV--APGALPALRALNEIGVLIAIDDFGTGYSSLSYLRTFHADRL 830 Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + G AI+R+I+ +A+++ ++A+ + + L GC +Q H Sbjct: 831 KIDMSFVRGIGTHCADEAIIRAILALARSLHFEVVAEGVERPDQLSFLVAEGCPIVQGYH 890 Query: 940 VASPLGFNSILKLLKE 955 + I ++ Sbjct: 891 FCRAVPAAEIPAYVRS 906 >gi|90414349|ref|ZP_01222327.1| putative signal transduction protein [Photobacterium profundum 3TCK] gi|90324573|gb|EAS41125.1| putative signal transduction protein [Photobacterium profundum 3TCK] Length = 725 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 118/431 (27%), Positives = 218/431 (50%), Gaps = 6/431 (1%) Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K+ + AF D LTG+ NR+ + L ++ + N ++ D+D +K+IND Sbjct: 289 KQKTHELEKFAFYDYLTGLANRRLLNEHLEQVIQQTECCGN-SAALLCFDLDDFKRINDS 347 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G +GD VL ++ R+ ++ DI+ARL G+ F ++L + ++ A + + I+ Sbjct: 348 QGHDIGDCVLQQISHRLNSVVNKNDIVARLGGDEFTVLLSASYSASDAGRIAGQLIEVIS 407 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 PI L +E++V+AS+G S S +L+NA++AMY AK G + F + + Sbjct: 408 EPIFLNNKELSVSASVGITMIPSDGNDVSTLLRNADMAMYSAKKSGKRNYHFFNKALQKK 467 Query: 703 --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 D+V I+E L A+ + L Y P+ ++ EALI+W+HP+ G + F+ I Sbjct: 468 ALDKVSIEESLDTAISKKQFVLHYQPVFNFYSNKLCCYEALIRWNHPREGLLYPERFIGI 527 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE IK I ++++ + I + I +N++ + D +L E ++ +I Sbjct: 528 AEESGKIKNIGYWVIQEVCNVIKMHQLHIGKRH-RIAVNLSPRQFNDPDLLENIRRIIRN 586 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 +++ +ES +M N E + L + +++GI++ +DDFGT S L+ L +P D Sbjct: 587 VGIDARFLEIEITESTLMENVESAIYTLRQFKELGITVAIDDFGTGYSSLAMLKRLPVDK 646 Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + I++++I MA ++ ++IA+ I + L + GCD+ Q Sbjct: 647 LKIDRSFVKDLDSNNSDQKIVQALISMAHTLQISVIAEGIETQEQFNLLQQYGCDFGQGY 706 Query: 939 HVASPLGFNSI 949 + P+ + Sbjct: 707 LFSRPVPITEL 717 >gi|319761875|ref|YP_004125812.1| diguanylate cyclase [Alicycliphilus denitrificans BC] gi|317116436|gb|ADU98924.1| diguanylate cyclase [Alicycliphilus denitrificans BC] Length = 887 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 148/679 (21%), Positives = 271/679 (39%), Gaps = 40/679 (5%) Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF--IWFIGLWMA 357 + + +A L + + + L+ A L++ +W Sbjct: 218 APWDAPERQGLAAPPLQEMGARGRHTGFWQARARLSGQPALVAARPLLYPDLWITASLPR 277 Query: 358 ITKRLDNDIIQPALVGGLVLIVILI---GFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 T A+ GG +L + G ++ Q + AV Sbjct: 278 STALAAWKQDAAAVGGGALLFGACLVAAGILATVYLRRMHRARQSVAGAKATLDQAVGAM 337 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSM---HGPIRNWLPYIH--------INDRDN 463 D R V + +G++ R +H + R Sbjct: 338 VSGFVLLDPARRIVQWNRPFEEMFPWLAGTVAVGLPYRRVLETTVHYHLPGASAQDKRAW 397 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 L + Q + F + R P + + +D+T+ + Sbjct: 398 VERRLQQQRDPKGTHEQC-----LPNGHFIQITERATPE-------GGLVILFHDVTDLR 445 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + I AF D LTG+ NR+ LDRL + R V+ ID+D +K +ND L Sbjct: 446 LAAAEIEQLAFYDQLTGLSNRRLLLDRLGQACAAAQRAGE-RGAVLFIDLDYFKTLNDTL 504 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMR 638 G +GD +L + RR+ ++ D +ARL G+ F ++L A A + Sbjct: 505 GHEMGDQLLQQVARRLQGCVRAGDTVARLGGDEFVVLLAGLPADAAEAALLARGVADKIV 564 Query: 639 KSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + P + + + S+G + + T+ E+LK A++AMY AK + G+ + F Sbjct: 565 HLLGRPYQIAGQTYHGSFSVGATLFGELPQTTAGEVLKQADIAMYQAKAQRGSTLRFFEP 624 Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S S+R ++ DL A+ + L P +VG E+L++W HP G + + Sbjct: 625 SMQAAISERAQLEADLQQAIGMGQFLLHLQPQYDGA-GAMVGAESLLRWQHPVHGLVPPA 683 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ +AE+ +I I ++L + WR ++ + + +N++++ + E + Sbjct: 684 RFIAVAEDSELIVPIGSWVLRGACELLARWRHAPHLRDLSLSVNVSARQFRQDGFAELVV 743 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 L+ T R++L +ES+V+ + E S + RLR G+ +DDFGT S LSYL Sbjct: 744 RLLQDTGAPAHRLELELTESLVLEDVEDSIAKMHRLRVKGVRFAVDDFGTGYSSLSYLTR 803 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P +K + S + + ++++I+ MA+N+E ++A+ + E L R GCD Sbjct: 804 LPLHRLKIDKSFVHHLGESHSDDVVVQTILGMARNLELEVVAEGVETEAQRAFLARHGCD 863 Query: 934 YIQDSHVASPLGFNSILKL 952 Q +A P+ + + Sbjct: 864 LYQGYLLARPMPVAQLEAM 882 >gi|253996596|ref|YP_003048660.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253983275|gb|ACT48133.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] Length = 623 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 122/448 (27%), Positives = 217/448 (48%), Gaps = 11/448 (2%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI +K++ + I A+ D LT +PNR +DRL L +SA N ++ ID+D + Sbjct: 169 QDIARRKEAEDKIQHLAYYDLLTNLPNRLLLIDRLQHTLAMSARHQN-HGALLFIDLDHF 227 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIA 631 K +ND G +VGD +LV + +R+ ++ D LARL G+ F +IL + + Sbjct: 228 KTLNDTKGHSVGDLLLVEVAKRLQTCMREGDTLARLGGDEFVVILQDLSEDSSQAAVQAE 287 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + +I +P L + S+G + + + T E+LK A++AMY AK G N Sbjct: 288 TVCAKIISAINLPYYLDSYLYHSSTSVGVCLFRNQEFTVDELLKRADIAMYQAKSAGRNT 347 Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + + DL LA++ ++ L Y + + G EALI+W HP+ Sbjct: 348 QRFYDPTMQAALEARAALESDLRLAIKKNQFRLYYQMQVDH-SGNVHGAEALIRWQHPQK 406 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + +F+ + EE +I I +++E I W + + +N+++ D Sbjct: 407 GLVPPLQFIPLTEETGLIIPIGHWVMETACAQIKRWESDPLTRNLQVAVNVSACQFHDPS 466 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 E ++S+ P +KL +ES+V+ N E + + + L+ G+ ++DDFGT S Sbjct: 467 FVERAIEMLSRHKIKPGNLKLELTESLVLDNVEEAIMKMQALKSYGVLFSMDDFGTGFSS 526 Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL +P D +K + S + + ++++II MA N+ +IA+ + E + L Sbjct: 527 LSYLTKLPLDQLKIDQSFIRNMCMNNRDAVVVQTIIGMANNLGIEVIAEGVESETQREFL 586 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 + C+ Q + PL ++ L++ Sbjct: 587 EQNKCNLCQGYLFSQPLPIDAFENKLRQ 614 >gi|121594417|ref|YP_986313.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42] gi|120606497|gb|ABM42237.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax sp. JS42] Length = 900 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 123/604 (20%), Positives = 251/604 (41%), Gaps = 23/604 (3%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 ++ A V + + ++ + + + D++++ D Sbjct: 304 LLGAAFSLLAGWFVGQQVNARQRAMALAREMTRELRRTRDELEATLNAVPDLLFEVDAQG 363 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 A ++G + ++ G R + LD Y G + Sbjct: 364 GIHHYRSARADLIGTRAQALVG--RTLGDVLPPAAAAECMAALDEAAEY--GYSEGRQYS 419 Query: 486 RAADNQFHWMIIR------IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 HW + P + + +I ++ D+T + ++ + A+ D LT Sbjct: 420 LDIGGSQHWFELSVACKQGGAPQTGAGPGQRHFIALSRDVTRRHEAEAAMYRLAYFDALT 479 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR+ L RL L + + + ID+D +K+IND G VGD +LV + R+ Sbjct: 480 GLPNRRLLLQRLQDALVTAQQQGGM-GALFYIDLDNFKEINDARGHGVGDGLLVQVAARL 538 Query: 600 GELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITV 654 + + +ARL + F +++ + + A +R+ + P +L Sbjct: 539 QDAAGPQETVARLGSDEFVLLVPRLGDGPSVAREQACRRAQQLRECLDAPYDLGGVHYGS 598 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712 T SIG + + ++L+ A+ AM+ AK RG N V F +R+ + +DL Sbjct: 599 TGSIGVTLFPKNGEGVEDLLREADTAMFCAKDRGRNQVCFFEQDMHAAAQERLALLQDLK 658 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 AV+N L P + +++G E L++W HP+ G + ++F+ +AE+ +I + Sbjct: 659 SAVDNDALLTYAQPQVDAA-GQLIGAELLLRWPHPQRGFVPPAQFIPVAEQAGLIVRMGA 717 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++++ + Q + I +N++ + + E ++A + T + + L Sbjct: 718 RVIQQACATLAELHQQGR--ALSISVNVSPRQFRQADFVEQVRAALQSTGAPAALLTLEV 775 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890 +ES+++ N + + + L +G+ ++DDFGT S L+YL +P +K + S + Sbjct: 776 TESLLVENWQDTARRMHELVALGVRFSIDDFGTGYSSLAYLKRLPLYELKIDRSFVQDAP 835 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 S AI+++I+ +A+++ ++A+ + L C +Q P L Sbjct: 836 SDANDAAIVQAILSVARHLRLRVVAEGVETRQQADFLIAHHCHGLQGYLFGLPQPLRDWL 895 Query: 951 KLLK 954 LK Sbjct: 896 AGLK 899 >gi|296446280|ref|ZP_06888226.1| diguanylate cyclase/phosphodiesterase [Methylosinus trichosporium OB3b] gi|296256181|gb|EFH03262.1| diguanylate cyclase/phosphodiesterase [Methylosinus trichosporium OB3b] Length = 704 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 145/694 (20%), Positives = 268/694 (38%), Gaps = 42/694 (6%) Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 +W + + + + + FY ++ + Sbjct: 29 QWEFRYALGGIGFMTAVGVTAAVLFYKHHDEMTVYYGIVIMTACAGAL----AARNSGSP 84 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI---QHVLAT 393 ++ A +A+T + L LVL + + T ++ A Sbjct: 85 RIVFGQAI------GTLAPLAVTCLFYYNSWYWGLTAILVLFFVSVKSTTKFLHANLEAA 138 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + R A+ + + + + GL + +R Sbjct: 139 LRNGRDANIQRRRFKSALNSMSHGLCMGNADQSLTVVNHRLVEFFGLGADEPPQQLRALA 198 Query: 454 PYIHI------NDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 I +DR F +S + E R D R N Sbjct: 199 ARIAEATDMPQDDRRAFVEQWESHAALPKTSVFSRELGDRIYD---------FRCEPADN 249 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G ++ + D+TEQ+++ I A D LT + NR F RL L L Sbjct: 250 G---AFVTVVEDVTEQRRAAREIERIAHFDTLTNLANRFQFQQRLERDLRHIHKR-GLCL 305 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ ID+D++K++ND LG ++GD +L ++ R+ + ++ D++AR G+ F +++ Sbjct: 306 ALLSIDLDQFKEVNDTLGHSIGDLLLRAVADRLRDCVRTVDMVARFGGDEFCVLMHPTAE 365 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A + +++ P + I + AS+G T +LK +LAMYH+K Sbjct: 366 MPPAEALAHRVIETLGRPYTVEGHTIVIGASVGLTVAPRDAATVEGLLKCGDLAMYHSKA 425 Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G + F + + + I+ DL A+ L + Y PI D+ + EAL +W Sbjct: 426 SGRRRAQWFDTAMEDALLRKRRIERDLREALRTDALDIHYQPIFDARDQSVSSCEALARW 485 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G +S + F+ IAEE +I + ++L RD W + + + +N + K Sbjct: 486 RHPQLGAVSPATFIPIAEETGIIVELGEWVLRHACRDARRWPEL-----VRVAVNFSCKQ 540 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 +L ++A + P R+++ +ES +M + E + + LR +G+ L+LDDFG Sbjct: 541 FQQPDLVARVEAALCAASLDPGRLEVEITESTLMQDTEDAAAKIAGLRALGVRLSLDDFG 600 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+YL P D VK + S + + K +AI+ ++ + + ++A+ + Sbjct: 601 TGFSSLAYLNSFPVDKVKLDRSFILQLSQSPKALAIVGAVAQLTDELGIELVAEGVETGE 660 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + L IQ + P I L R Sbjct: 661 QLALLRGKNVHLIQGFLFSKPKPREEIDLLFAGR 694 >gi|239941499|ref|ZP_04693436.1| hypothetical protein SrosN15_10918 [Streptomyces roseosporus NRRL 15998] gi|239987963|ref|ZP_04708627.1| hypothetical protein SrosN1_11697 [Streptomyces roseosporus NRRL 11379] gi|291444943|ref|ZP_06584333.1| sensory box/GGDEF family protein [Streptomyces roseosporus NRRL 15998] gi|291347890|gb|EFE74794.1| sensory box/GGDEF family protein [Streptomyces roseosporus NRRL 15998] Length = 639 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 140/585 (23%), Positives = 270/585 (46%), Gaps = 29/585 (4%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 I S+ A + + D V + +LG + + G L + Sbjct: 53 SIASELRDYRAAFNAATLPMGVVDGRGHVVRANEALGGLLGTPAAVLAGRQACELLDLAT 112 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIAN 517 +DR + RR R + R++ D + W I + PM+ + + R + Sbjct: 113 DDRT--WHAYREVLLGRRSRFRCTRRLKHPDGRSLWAEITVVPMTGASAAESARVLLTVA 170 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-------TDDNLRPTVMV 570 D++++++ E + D +T +PNR F +RL + L+ + + R + Sbjct: 171 DVSDRRELQERLRHLQMHDPVTRLPNRTLFFERLASTLETPPYQDDSLPSRQHARIGLCY 230 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD--------ILARLSGNRFGIILI 622 +D+D +K IND LG GD +L ++ R+ + + ++ARL G+ F I++ Sbjct: 231 LDLDGFKAINDTLGHRTGDRLLAAVAARLTDCAENDASRNAGGSRLVARLGGDEFAILVE 290 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + ++ D A ++ ++ P +L + ++V+ASIG T++ + + +++ A+ +Y Sbjct: 291 DSAGTQELTDLARSVLAALQQPFDLAGQRLSVSASIGVVERTAAGTSPTGLMQAADTTLY 350 Query: 683 HAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G F + L AVE E L Y P++ + D + G+EA Sbjct: 351 WAKADGRARWTLFDPERNAHRMTRQSLSSTLRPAVERGEFTLEYQPLVGMADGVLRGVEA 410 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILIN 799 L++W+HP++G + + F+ IAEE I + ++L R W+ D + PP+FI +N Sbjct: 411 LVRWNHPQFGVLPPNRFVQIAEEDGSIVQLGRWVLRTACRQARRWQLDHPDEPPLFISVN 470 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +A + + D++L + ++++T +P ++L +ES VMG+ R L L +G+ + Sbjct: 471 VAVRQVWDSDLVADVAQILAETELAPGLLQLELTESAVMGSGGRPLRALQALSDMGVRIA 530 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPMAKNIET 911 +DDFGT S L+YL +P +K +G+ + G + I+ +++ +A + Sbjct: 531 IDDFGTGYSNLAYLSRLPVSVLKLDGAFVKGFRYEDGTHPSPADETIVEAMVQLAHRLGL 590 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 T+ A+ + + L R+GCD Q + + I L+ R Sbjct: 591 TVTAECVETAGQAERLRRIGCDTGQGWLYSRAVAPEQIAGLIGSR 635 >gi|182701591|ref|ZP_02612364.2| putative diguanylate cyclase [Clostridium botulinum NCTC 2916] gi|182670760|gb|EDT82734.1| putative diguanylate cyclase [Clostridium botulinum NCTC 2916] Length = 843 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 130/452 (28%), Positives = 240/452 (53%), Gaps = 11/452 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + ++ + +N + Sbjct: 398 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTIN---SYENEKFA 454 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R LL + RL G+ F II+ + + Sbjct: 455 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 513 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ I E ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 514 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 573 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E +EL + + PI L +I+ +E+L++W Sbjct: 574 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 633 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 IS ++F+ +A+ + I I+ ++L + W+ Q P+++ +NI+ K + Sbjct: 634 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 691 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L++ GI ++LDDFGT Sbjct: 692 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 751 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ IIA+ + Sbjct: 752 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 811 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954 ++ L +GCD+IQ +++ PL + K ++ Sbjct: 812 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 843 >gi|218245687|ref|YP_002371058.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|257058734|ref|YP_003136622.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802] gi|218166165|gb|ACK64902.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|256588900|gb|ACU99786.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802] Length = 593 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 135/436 (30%), Positives = 235/436 (53%), Gaps = 5/436 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 +K+ + + +A D LTG+PNR FL+R+ L + + + V+ +D+D++K +N Sbjct: 154 ALEKAQQKLSYDALHDPLTGLPNRSLFLERVGRSLQRAQEEKDYSFAVLSLDLDRFKVVN 213 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 + G VGD +LV+++R + L+ D +ARL G+ F I+L + + ++K Sbjct: 214 ESDGHRVGDRLLVAISRTLETLVGSTDTVARLGGDEFAILLEKIADVNEAIRTTQTIKKQ 273 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 P L EREI + SIG + E+L++A++AM AK +G E F Sbjct: 274 FVSPFQLTEREIFTSPSIGLTFSSPKYKHPEEILRDADIAMARAKQKGRGRYEVFDEEMH 333 Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++ DL A+EN E + Y PI+ L +IVG EALI+W HPK G IS EF+ Sbjct: 334 TQALKLLNLETDLRRAIENQEFLVYYQPIMALEKTKIVGFEALIRWQHPKKGFISPGEFI 393 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817 IAEE +I I +L+ + + +W+++ + I +N++S+ L + E+ + + Sbjct: 394 PIAEETGLIIPIGQIVLKEACQQLKTWQEKLPKAKNLTISVNLSSQQLKEPEILQHIDHS 453 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++ T P +KL +ES++M N + + LL +L++ I ++LDDFGT S LSYL P Sbjct: 454 LNVTGLQPESLKLEITESLLMENADVATTLLRQLKERKIQISLDDFGTGYSSLSYLHRFP 513 Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S + E+ + I++SI+ +A N++ ++A+ I E + L + C++ Sbjct: 514 VDTLKIDRSFVNCIGKPEENLTIIQSIMALAHNLDMDVVAEGIETEKQLTFLKFLECEFG 573 Query: 936 QDSHVASPLGFNSILK 951 Q + PL + + Sbjct: 574 QGYFFSKPLPSHEVEN 589 >gi|322804630|emb|CBZ02182.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Clostridium botulinum H04402 065] Length = 447 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 130/452 (28%), Positives = 239/452 (52%), Gaps = 11/452 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + ++ +N + Sbjct: 2 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTINN---YENEKFA 58 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R LL + RL G+ F II+ + + Sbjct: 59 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 117 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ I E ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 118 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 177 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E +EL + + PI L +I+ +E+L++W Sbjct: 178 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 237 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 IS ++F+ +A+ + I I+ ++L + W+ Q P+++ +NI+ K + Sbjct: 238 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 295 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L++ GI ++LDDFGT Sbjct: 296 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 355 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ IIA+ + Sbjct: 356 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 415 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954 ++ L +GCD+IQ +++ PL + K ++ Sbjct: 416 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 447 >gi|153933976|ref|YP_001382759.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC 19397] gi|153934947|ref|YP_001386310.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall] gi|152930020|gb|ABS35520.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC 19397] gi|152930861|gb|ABS36360.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall] Length = 892 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 130/452 (28%), Positives = 239/452 (52%), Gaps = 11/452 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + ++ +N + Sbjct: 447 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTINN---YENEKFA 503 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R LL + RL G+ F II+ + + Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 562 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ I E ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 563 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 622 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E +EL + + PI L +I+ +E+L++W Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 682 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 IS ++F+ +A+ + I I+ ++L + W+ Q P+++ +NI+ K + Sbjct: 683 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 740 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L++ GI ++LDDFGT Sbjct: 741 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 800 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ IIA+ + Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 860 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954 ++ L +GCD+IQ +++ PL + K ++ Sbjct: 861 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 892 >gi|148378360|ref|YP_001252901.1| signaling protein [Clostridium botulinum A str. ATCC 3502] gi|148287844|emb|CAL81910.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502] Length = 895 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 130/452 (28%), Positives = 239/452 (52%), Gaps = 11/452 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + ++ +N + Sbjct: 450 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTINN---YENEKFA 506 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R LL + RL G+ F II+ + + Sbjct: 507 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 565 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ I E ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 566 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 625 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E +EL + + PI L +I+ +E+L++W Sbjct: 626 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 685 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 IS ++F+ +A+ + I I+ ++L + W+ Q P+++ +NI+ K + Sbjct: 686 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 743 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L++ GI ++LDDFGT Sbjct: 744 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 803 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ IIA+ + Sbjct: 804 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 863 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954 ++ L +GCD+IQ +++ PL + K ++ Sbjct: 864 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 895 >gi|120611161|ref|YP_970839.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120589625|gb|ABM33065.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] Length = 962 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 139/598 (23%), Positives = 260/598 (43%), Gaps = 24/598 (4%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGY-FSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 AL L I + T Q LA + + + + + D++ + D Sbjct: 362 WLGALFSVLAGWFIAMQATGHQRALALAQSMTSELRTARDNLEGILQAVPDLLVELDAGG 421 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + + S + G R + F L + L ++ Sbjct: 422 RIHYHRSARSDLSAEPSQAFEG--RMLAEVLPPGVASEFMQALREA-ESQGVSLGRQYHQ 478 Query: 486 RAADNQFHWMIIRIRPMSNSN------GDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 A Q W + + + G RY+ +A DIT ++ + + A+ D LT Sbjct: 479 DTAMGQ-RWFELSVARRLGVDSAAGQGGGASRYVALARDITARRDAEAAMHRMAYYDALT 537 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR+ ++L LD + + ID+D +K++ND G A GD +LV + RR+ Sbjct: 538 GLPNRRLLFEQLQDALDQA-RSGGRIGALFFIDLDNFKQLNDARGHAAGDRLLVQVARRL 596 Query: 600 GELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITV 654 LL+ + R+ G+ F +++ N A +R+ + P +L +V Sbjct: 597 ERLLQGFGSVVRIGGDEFVVLIPRIANGMQAGVDAAGAMAARLREGMEAPYDLGSTYYSV 656 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712 TAS G + + T ++L+ A+ AMY AK G + V F +R+ +++DL Sbjct: 657 TASTGVTLFPKAGETVEDLLREADTAMYRAKSSGAHRVRFFEADMQAAAQERLSLEQDLA 716 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+ + L + HP + D + G E L++W HP GN+S + F+ IAEE +I + Sbjct: 717 QAIADDALEIHIHPQVD-RDGAVCGGELLLRWRHPAHGNVSPARFVAIAEESGLILRLGA 775 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++ R + + I +N++++ + ++ ++ + SR+ L Sbjct: 776 RVIRRACDALAQLHAAGLD--MTISVNVSARQFRQEDFVAYVRDALAYSGAPASRLILEV 833 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +E++++ N + + + L + G+ ++DDFGT S L+YL +P +K + S + + Sbjct: 834 TETLLVENWQDTARRMAELVRFGVRFSIDDFGTGYSSLAYLKRLPLYELKIDRSFVQDAP 893 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 AI+R+I+ MA+++ ++A+ + E + L R GCD +Q A PL Sbjct: 894 VNPNDAAIVRAILSMAQHLRLRVVAEGVETETQAEFLARHGCDAMQGYLYAHPLPLKE 951 >gi|75910622|ref|YP_324918.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor [Anabaena variabilis ATCC 29413] gi|75704347|gb|ABA24023.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor [Anabaena variabilis ATCC 29413] Length = 880 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 119/440 (27%), Positives = 234/440 (53%), Gaps = 6/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++++ E I A D LTG+PNR F + L L ++ VM +D+D++K IN Sbjct: 437 QRQQVEEKIRYQALHDLLTGLPNRLLFNELLAKALANASRSQQ-SLAVMFLDLDRFKVIN 495 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG ++GD +L S+ +R+ + L+ D ++R G+ F I+L + ++ A + K+ Sbjct: 496 DTLGHSLGDRLLKSVAQRLCDCLRSGDTVSRWGGDEFTILLPHISYIEEVTQAAYRILKA 555 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698 + +L E+ V+AS+G A + ++K+A+ A+YHAK G N+ + + S Sbjct: 556 LEEVFHLDGHELYVSASLGIALLDHHSPDAEALIKHADAALYHAKDEGRNNYQFYTTSLS 615 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + +++ L A+E EL + Y P + ++ +I G+EAL++W HP+ G ++ S F+ Sbjct: 616 GKTPELLTLEKSLRYALEKQELTVYYQPRVNILTGQITGMEALLRWQHPEMGIVAPSIFI 675 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAEE +I I ++L +W++ PP+ + +N++ K L E + A++ Sbjct: 676 PIAEETGLIIPIGEWVLRTACMQNRAWQEAGL-PPLQMAVNLSPKQFRQPNLLEIVSAIL 734 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 ++T +P ++L +ES + + + +R +L L+++G+ + +DDFGT S LS L +P Sbjct: 735 AETSLAPEFLELEITESTAIEDIDFTRSVLENLQQMGVDIAIDDFGTGHSSLSRLQLLPL 794 Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K +GS + T I+++I+ + +++ + A+ + + ++ L + C +Q Sbjct: 795 HNLKIDGSFIKALTTDSKVAHIVKAIVTLGRSLGLRLTAEGVEKQEELDFLKSINCQDVQ 854 Query: 937 DSHVASPLGFNSILKLLKER 956 PL ++L+ Sbjct: 855 GFLFYKPLSAEKATEILQSE 874 >gi|307609096|emb|CBW98536.1| hypothetical protein LPW_03661 [Legionella pneumophila 130b] Length = 740 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 143/568 (25%), Positives = 267/568 (47%), Gaps = 22/568 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453 ++ + + S D + D+ V + + M + L Sbjct: 180 TESLQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIMKKTSESQLIQY 239 Query: 454 ---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 ++ + ++ Y FR + + + +P + Sbjct: 240 MSTQLLNSEQHAQHVKEFSIHIDDSSIQI-YHFR----NGKV--VECCSKPHR-VGPQTV 291 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + DITEQ + E + A D LT +PNR +DR+ + A ++ ++ Sbjct: 292 GRVWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISSYARH-KMKFAILF 350 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 D+D++K IND L GD +L ++ +R+ L++ D LARL G+ F ++ S N+ +I Sbjct: 351 FDLDRFKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQI 410 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + KS P ++ ER+I + SIG + + + T + +L NA++AMY AK RGGN Sbjct: 411 AGVAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGN 470 Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + + ++ DL A+ + E +L+Y P + EI +EALI+W+HP+ Sbjct: 471 QFSFYTEKLNKKTNQQFQLELDLQKAIIHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQ 530 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G I +F+ AE +I I ++L + I +WR +P I + N+ASK L Sbjct: 531 KGIILPLDFIPTAESSGLIVPIGEWVLRETCKQIGTWR-TMGLPEIRVACNVASKQLRQR 589 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + ++ L+ + P ++L +E+V++ + + + +L+ +G+ + LDDFGT S Sbjct: 590 DFPAMVEDLLKEYSVEPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNS 647 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+ L + D++K + S + + AI+ +II +A+++ IIA+ + + +K Sbjct: 648 SLNLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKF 707 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954 L + C+ IQ ++ P+ I KLL+ Sbjct: 708 LKKRRCNDIQGFLMSKPIPPEEIEKLLQ 735 >gi|226947588|ref|YP_002802679.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum A2 str. Kyoto] gi|226842632|gb|ACO85298.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium botulinum A2 str. Kyoto] Length = 843 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 130/452 (28%), Positives = 239/452 (52%), Gaps = 11/452 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + ++ +N + Sbjct: 398 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTINN---YENEKFA 454 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R LL + RL G+ F II+ + + Sbjct: 455 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 513 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ I E ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 514 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 573 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E +EL + + PI L +I+ +E+L++W Sbjct: 574 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 633 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 IS ++F+ +A+ + I I+ ++L + W+ Q P+++ +NI+ K + Sbjct: 634 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 691 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L++ GI ++LDDFGT Sbjct: 692 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 751 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ IIA+ + Sbjct: 752 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 811 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954 ++ L +GCD+IQ +++ PL + K ++ Sbjct: 812 LEILQELGCDFIQGFYISEPLPIKNFASKFIR 843 >gi|209964794|ref|YP_002297709.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] gi|209958260|gb|ACI98896.1| diguanylate cyclase, putative [Rhodospirillum centenum SW] Length = 609 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 156/502 (31%), Positives = 266/502 (52%), Gaps = 12/502 (2%) Query: 463 NFRTILDSFVGYRRGRL------QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +R L V ++EFR+ A WM++R + + NG LR G Sbjct: 104 KYRAALHDHVSRAPEPFGALHQLEHEFRMLHASGAECWMLVRGAAIRDGNGTALRMAGSM 163 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT +K + +L +AF D LTG+ NR LDR+ +D + + +++ D+D++ Sbjct: 164 SDITARKHAEAQLLFDAFHDGLTGLSNRHLLLDRIGQAIDRRRHPTDGQFALILFDLDQF 223 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND LG A+GD+VL + RR+GE + D +AR S + FG+++ + A Sbjct: 224 KAINDSLGTALGDEVLRIVARRLGEARRSGDTVARTSVDEFGVLMDGVADVKAAMSGAER 283 Query: 637 MRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ PI L REI +T S G A + +++ML++A LAM+ AK G + +E F Sbjct: 284 LAAAVCRPITLPDGREIVLTCSAGLAMSNTGYAAATDMLRDASLAMFRAKAAGRSRIEVF 343 Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 R+ + DL +A+++ +L+LVY PIIR+ + I G EAL++W HP+ G I Sbjct: 344 DDALRERALSRLRTESDLRVALDSDQLFLVYQPIIRMQNGSIAGFEALVRWSHPERGTIL 403 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ +AEE +I + + L+ A I WR + +F+ +N++ + L+D+++ Sbjct: 404 PGEFIALAEETGLILRLGRWALKEAALQIKDWRRRTGR-DLFVSVNVSGRQLMDDDMAAA 462 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++ +T P +KL +ES+++ + R +L +RK+G+ L LDDFGT S LSYL Sbjct: 463 VAQVLGETGVEPRALKLEITESLLLDDTARCVQMLHDIRKLGVRLCLDDFGTGFSNLSYL 522 Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P DT+K + S + +T ++R I R I +A ++ ++A+ + + + L + Sbjct: 523 HSYPVDTLKIDRSFVRAATAGDRRAEIARIITMLAAALDLEVVAEGVERDAEAAFLRDLH 582 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C Y Q A P+ + L Sbjct: 583 CQYAQGYFFARPMPPEEAERHL 604 >gi|152997984|ref|YP_001342819.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] gi|150838908|gb|ABR72884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Marinomonas sp. MWYL1] Length = 1018 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 166/789 (21%), Positives = 319/789 (40%), Gaps = 41/789 (5%) Query: 202 LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261 + I T + + + + G ++ LV + + ++ S I Sbjct: 227 MIILNTFISAAWGALIAAGINYFRDGYIEVGFVLNGTIAGLVGITASCHVVSPGASVIIG 286 Query: 262 SSSLIIFLFMYLHWNRW-----HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA 316 S S ++ F L RW V F+GI + + L Sbjct: 287 SVSGVVVYFGSLLMERWRLDDALDVVPAHLFAGIWGTLSVALFGQTDKIDNGLGFLGQLG 346 Query: 317 SIVLYYTYFIIYHGMKGYERAVLL-------------------IPAWILIFIWFIGLWMA 357 L Y + GY LL ++ + M Sbjct: 347 VQALGIVVIGFYCFVVGYSCMWLLNRFMPLRASKEQEEQGLNVAEHRATTELFDLLTSMQ 406 Query: 358 ITKRLDNDIIQPALVGGLVLIVIL------IGFTVIQHVLATGYFSQGIFSDGERQSLAV 411 + + D +P + + + V + R+S + Sbjct: 407 YQ-QNNADFSKPVPEEPFTEVGQIARKYNQVIDRVSTEIAQRDDALMRFQESEMRKSAIL 465 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 S D + + + P G + G L +I DR L+S Sbjct: 466 NSSMDCIVTINRFGSVIEFNPAAERTFGCLKKQVEGKSFIGL-FIREEDRKKIFESLNSG 524 Query: 472 VGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 G + + FR++ + N I I + + Y D+T K E Sbjct: 525 FSTSNGLILNRRNPFRLQRSPNNDFPAEIAITKANADSSQESEYTLHIRDMTRHVKLQER 584 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A+ D LT + NR +D L + L + T ++ +D+D +K IND LG G Sbjct: 585 LKFLAYSDPLTSLYNRTYLMDSLISALLFA-TKQKTSVGLLFLDLDNFKIINDTLGHKAG 643 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D++L + RR+ + D++AR G+ F ++ + N ++A A + +++ P+NL Sbjct: 644 DELLCEVARRLIAVSDQFDVIARWGGDEFVFMMTKDVNESRLAKRAQQILEAMRAPVNLN 703 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI- 707 E+ T+ SIG A + + +++ A++AMY AK +G ++ + F Sbjct: 704 EQYFTIPTSIGIAYTGEQSLDADRLIQQADIAMYWAKEKGRDNAQFFTPEMSNIVTKKFG 763 Query: 708 -KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++++ A+ + + LV+ P + + E I+GLEALI+W+HP G I ++F+ +AEE + Sbjct: 764 FEKEINDALASEQFSLVFQPKVFMEKENILGLEALIRWNHPTKGLIPPADFIPMAEESNL 823 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I+ +++++ +WRDQ + I +N++ + L+ + L + ++ Sbjct: 824 ISRIDEWVIDQALLQQKAWRDQGLRI-VPIAVNLSGRHLVSDSLVSYISQKLNAYGIEGC 882 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 +++ +E V++ + +R ++ L+++ I +++DDFGT S LSYL +P D +K + S Sbjct: 883 LLEIEITEGVLLQDIQRCIEVMAELKELDIRISVDDFGTGYSSLSYLKRLPLDILKIDQS 942 Query: 887 LMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + + I +I+ +A+N+E I+A+ + L +GC+ Q + P+ Sbjct: 943 FVEECDRHIEDAKICETIVHLARNLELVIVAEGVETAPQADTLKSLGCEIFQGYYFHKPM 1002 Query: 945 GFNSILKLL 953 I KLL Sbjct: 1003 VSADIAKLL 1011 >gi|34497763|ref|NP_901978.1| hypothetical protein CV_2308 [Chromobacterium violaceum ATCC 12472] gi|34103619|gb|AAQ59980.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 679 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 124/435 (28%), Positives = 224/435 (51%), Gaps = 5/435 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I E++++ E + A D LTG+PNR F RL+ L + + ++ ID+D++K Sbjct: 232 IQERRRAEERLDHLAHHDPLTGLPNRLLFQKRLSRALSVPDL-PPYKLAMLFIDLDRFKD 290 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG +GD +L ++ R+ + ++ D+LARL G+ F +L S N AD A + Sbjct: 291 VNDTLGHYIGDQLLNAVAARLADSIRAEDMLARLGGDEFICVLESIENRDMAADVAGKLL 350 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 P + ++ ++ASIG + + +L++A++AMY AK+ G N + + Sbjct: 351 ALFRQPFCINGNDLYLSASIGISFAGNDGADVDTLLRHADIAMYSAKNAGRNRCQHYSPQ 410 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ L A++N E+ + Y P + + ++VG EAL +W HP G + + Sbjct: 411 MSEDAEQRVVLERQLRQALDNDEITVHYQPQVDAVTGKLVGAEALARWRHPILGMVPPAR 470 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE +I A+ +LE+ R + SW + P + +N++++ L + + + Sbjct: 471 FIPVAEECGLIVALGEQILEKSLRQLASWHEAGFPLP-SVSVNLSARQLERQDFPQHVAR 529 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + P ++L +ESV+M E + +L LR GI L++DDFGT S LSYL + Sbjct: 530 LLKRYRLEPRHLELEITESVIMA-TEDAVNILAELRAQGIRLSIDDFGTGYSSLSYLRQL 588 Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 P +K + S + G + AI+ +I+ ++ ++ +A+ + ++ L GC IQ Sbjct: 589 PVQVLKVDRSFILGIGKGGEAIVHAIMALSSSLGLETVAEGVEEASQLEFLRSAGCHIIQ 648 Query: 937 DSHVASPLGFNSILK 951 A+PL S Sbjct: 649 GFLYAAPLPAESFAD 663 >gi|157376349|ref|YP_001474949.1| signal transduction protein [Shewanella sediminis HAW-EB3] gi|157318723|gb|ABV37821.1| signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein [Shewanella sediminis HAW-EB3] Length = 951 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 125/556 (22%), Positives = 249/556 (44%), Gaps = 15/556 (2%) Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH-INDR 461 + + + + D + + I G A + G R H Sbjct: 387 LKHAASVFTHTNQGITITDTSGVIIEVNDAFSAITGYARDEVIGQNPRVLQSGRHSPEFY 446 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 L + G E + +++ + ++ I + ++ G + Y+ + NDIT Sbjct: 447 REMWATLQA-----DGHWTGEIWNKRKNDEIYPEMLTISAVLDATGKVQNYVALFNDITA 501 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 K+ E + A D LT +PNR DRLT + V+ +D+DK+K +ND Sbjct: 502 IKEHQEQLERIAHYDTLTNLPNRTLLADRLTQSMVQVRRR-KSSLAVVFLDLDKFKDVND 560 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G VGD +L+ ++RR+ E L+ D LAR+ G+ F +L+ + ++ Sbjct: 561 AYGHDVGDKLLIVISRRLKEALRDIDTLARIGGDEFVAVLMDIEKGEDCEPVLERLLEAA 620 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 + + + + V+AS+G A + I + ++L++A+ AMY AKH G N F + Sbjct: 621 SGSVTVEGIMLKVSASMGVAIYPQDGIDADQLLRHADQAMYVAKHEGKNCYHLFDTAQNI 680 Query: 702 SDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + ++ + + A++ SE L Y P + + I+G EALI+W P+ G + +EF+ Sbjct: 681 AMQIRHDDLQSMRKALDQSEFVLYYQPKVNMRTGAIIGAEALIRWLSPERGLVGPNEFLP 740 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 E + + ++++ I +W++ I + +N+++ L + + AL+ Sbjct: 741 AIENHVISIEVGEWVIDTALGQIAAWQELGLD--IPVSVNVSALQLQHDGFVTCLAALLE 798 Query: 820 KTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +PS +++ E+ ++ + + + ++G++ LDDFGT S L+YL +P Sbjct: 799 AHPEVAPSSLEIEVLETSLIDDVMQVSATMLACIELGVTFALDDFGTGYSSLTYLRRLPA 858 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + + + T +AI+ ++ +AK+ + +IA+ + L + GC+ Q Sbjct: 859 SLIKIDQTFVLDMLTTPDDLAIVEGVVSLAKSFKHKVIAEGVETIAHGTTLLQTGCELAQ 918 Query: 937 DSHVASPLGFNSILKL 952 +A P+ I + Sbjct: 919 GYGIARPMMAKDIPEW 934 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 86/282 (30%), Gaps = 32/282 (11%) Query: 261 LSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL 320 + ++L + + + + + I+ + + +V + + S+ Sbjct: 14 VLATLWVVIIGVYLLKLRQLRAEGAVSRTVTVLLIILAIDAFRTIVESVYFGLYFNSLYG 73 Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380 I + A+L+IP I IF + + + I + + DI Sbjct: 74 LIPKSIADLLSQ---PALLIIPKLINIFAGVLVILLLIKRWVPRDI-------------- 116 Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + +LA ++ + G D D R+ V+ ++G Sbjct: 117 ---HERKEALLALHAAKSASVNNENLFNSIFNGVTDACIFADSNRNIVSINQGFELMMGY 173 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRT---ILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 + G I+ +D + R + + + +R D Sbjct: 174 GIDELEGKTA---SIIYESDEEYERQGRIHFNLAAKEKVTPYEANYR--HKDGSIIVGET 228 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKS----LEGILCNAFQ 535 + + IL Y+G D+T++KK+ E + Sbjct: 229 SRIVIRTLDDQILGYVGFIRDVTDRKKATTALQESTAMLSHH 270 Score = 67.7 bits (164), Expect = 9e-09, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 4/148 (2%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 I+ V + + S V + WD + + I G + + Sbjct: 247 IRDVTDRKKATTALQESTAMLSHHVQNTPLGCISWDSNLNCIEWNKSAEKIFGYSPDEVI 306 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + + RD+ I + R E D + P+ Sbjct: 307 GHALLEI-LVSEEIRDDINNIGKILFKGNKCTRSSNE--NITKDGRTIICEWYSTPIVGV 363 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNA 533 NG+++ + DITE K++ + A Sbjct: 364 NGEVIGVTSLILDITESKQAELKLKHAA 391 >gi|34498408|ref|NP_902623.1| hypothetical protein CV_2953 [Chromobacterium violaceum ATCC 12472] gi|34104262|gb|AAQ60621.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 1390 Score = 482 bits (1241), Expect = e-133, Method: Composition-based stats. Identities = 138/566 (24%), Positives = 261/566 (46%), Gaps = 15/566 (2%) Query: 397 SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-P 454 + +F ++++ AV S + + + + I G ++ G + L Sbjct: 818 ERKVFEQTQKEAAAVFDSSYEGILMVNPDGVITKVNNAFSRITGYSAEEAIGQKPSLLAS 877 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + + +S G+ + E R + + ++ I + + G + YIG Sbjct: 878 GKQP--ISFYEELWNSVKGH--DFWRGELWNRRKSGELYAELLSISVVRDEQGQVQHYIG 933 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +DIT+ K+ + A D LTG+PNR+ DRL + + V +D+D Sbjct: 934 IFSDITQLKQHEAELDRVAHYDPLTGVPNRRLLSDRLRQAIVRANRSGR-SCAVCFLDLD 992 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K +ND G AVGD +LV+++ + +L+ D LARL G+ F ++L + + Sbjct: 993 GFKAVNDKYGHAVGDQLLVTVSNNLKSILRGDDTLARLGGDEFVVLLSEVGSPEECMLVL 1052 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + + P+ + + E+ VTASIG + + + +L++A+ AMY AK G N + Sbjct: 1053 DRVLATASRPMPVGDAEVGVTASIGVSLYPQDNVDPDTLLRHADQAMYLAKDAGKNRYQL 1112 Query: 695 FRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + R + E L A+ + E L Y P++ L EI+ +EALI+W HP+ G + Sbjct: 1113 FDPENDRKAQEHRQFLELLRQALVHDEFALFYQPVVDLQSGEIISVEALIRWRHPRRGLL 1172 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 + +EF+ + A L++L+ + W + I I N+++ LL + + Sbjct: 1173 APAEFLPHLSGNELEAAFGLWVLDAALSQVSRWAEAGFH--IKISTNVSTNYLLRTDFSQ 1230 Query: 813 GMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + ++ + P ++L ES G+ E++ +L R R++G+ LDDFGT + L+ Sbjct: 1231 QLSTVLGRYPNVPPWHLELEIVESAS-GDVEQTIRVLQRCRELGVHFALDDFGTGHASLT 1289 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 +L +P DT+K + S + ++ I+ +I +A IA+ + L Sbjct: 1290 HLRRLPVDTLKIDNSFVHDMIGSQDDRRIVEGVIELASIFARKAIAEGVETMEHAALLRS 1349 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 +GC Y Q +A P+ + ++ + Sbjct: 1350 LGCHYAQGFGIARPMEADKVMDWCQR 1375 Score = 135 bits (341), Expect = 3e-29, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 2/152 (1%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 + + Q + + + + GS WDW++ +R +P ++LG G MH Sbjct: 684 RDLTEQHRAEQELRDRERQLARVIAGSDQGFWDWNLETNRFQVSPRWESMLGYGPGEMHI 743 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSN 506 +W ++H D + R + + + E R R + W++ R R + N Sbjct: 744 TADSWYEHVHPEDVERTRDSIQRNLSGEMKSHEVEIRCRTRGGDWRWILSRGRVVERNDR 803 Query: 507 GDILRYIGIANDITEQKKSLE-GILCNAFQDN 537 G+ L G DITE+K + A D+ Sbjct: 804 GEPLSMSGTHTDITERKVFEQTQKEAAAVFDS 835 Score = 123 bits (309), Expect = 2e-25, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 I+ + +Q + + + + R L + D WDWD+ +V + + Sbjct: 432 AIVSLYGTMQDITERKRMAMQVKASESRLQLVAEATSDGFWDWDLRSGKVYRSSRYYEVT 491 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G G R + +H D +++ + R++ +FR+ D W+ R Sbjct: 492 GTQPEDDSGDFRFFRQMVHPADLPYVLQAIEAHRRGKTPRIEIDFRLARQDEGVRWLQAR 551 Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530 R + + G +R +G +DITE+K++ E + Sbjct: 552 GRAVEWDERGAAVRLVGNLSDITERKRADEDLR 584 Score = 88.5 bits (218), Expect = 5e-15, Method: Composition-based stats. Identities = 47/334 (14%), Positives = 97/334 (29%), Gaps = 12/334 (3%) Query: 203 AIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALS 262 + L + ++ + M + VL +++D L + + Sbjct: 123 MLILFMLPIILGACMGGIGPGLLATVLSVLAVDLMVEPHLHAAQTPWHSKVQLLFLALNG 182 Query: 263 SSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322 + + L L + + + + LA + Sbjct: 183 LA-VSLLCEMLRQALERVALHRALLDAVVSSTSDAVFVKDVQGRYLLVNQAALAFVGKTS 241 Query: 323 TYFIIYHGMKGYE--RAVLLIPAWILIFIWFIG------LWMAITKRLDNDIIQPALVGG 374 I ++ A LI LI L + +R+ + + + Sbjct: 242 GEVIGKDDRDVFDEETARELIIQDRLIMQSGRVQTHEEHLALQNGERMVFLVTKGPVYNH 301 Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 L+ L G + + + + A +G W WD+V DR + +P+ Sbjct: 302 EGLLGGLFGIS--RDITRQKQAENQLRDSEAMLQQAQQLAGIGSWSWDLVDDRQSWSPEA 359 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 + GL S Y + ++ G + + + AD + W Sbjct: 360 YRLFGLTEKSGPPGYPAMRRYFDADGWAQLSEAVERCKLVGMG-YECDVELLRADGESRW 418 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + +R + G I+ G DITE+K+ Sbjct: 419 LTMRGEARRDEEGAIVSLYGTMQDITERKRMAMQ 452 Score = 69.6 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 42/329 (12%), Positives = 98/329 (29%), Gaps = 20/329 (6%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF-- 268 + + FA+AW+ + S++V L + + + + I L +L Sbjct: 9 FILLAVSSYALFALAWIFFSDQLLAGLDASRVVPLSIAKGVFFVLVTSILLLLALRAVPS 68 Query: 269 -----LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 +L + T + + +++ + Sbjct: 69 REGGAQLAWLGNLANGMRSERWTNWLAYPAVLALVAGALALRQFLMGPELGAHPMLILFM 128 Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 II G LL ++ + + + L L + + + Sbjct: 129 LPIILGACMGGIGPGLLATVLSVLAVDLMVEPHLHAAQTPWHSKVQLLFLALNGLAVSLL 188 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +++ L + + V + D V+ D+ + +G SG Sbjct: 189 CEMLRQALERVALHRALLDA------VVSSTSDAVFVKDVQGRYLLVNQAALAFVGKTSG 242 Query: 444 SMHGPIRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G + D + R ++ D + +E + + + ++ P Sbjct: 243 EVIGKDDRDVF-----DEETARELIIQDRLIMQSGRVQTHEEHLALQNGERMVFLVTKGP 297 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 + N G + GI+ DIT QK++ + Sbjct: 298 VYNHEGLLGGLFGISRDITRQKQAENQLR 326 Score = 58.8 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 9/134 (6%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 E L + +GD +W D+ + P + G + + + + Sbjct: 575 ERKRADEDLRLVLNEAGDAIWVTDVDGYFIFANPAACRLTGHSLDDLREMHIH--DLVAP 632 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 L L+ E+++R + + + M + RYI D Sbjct: 633 ECLGLLAEHLAKI--NNGAFLRSEWKLRLKKSGTVSVDLTSGKMKDG-----RYIAFGRD 685 Query: 519 ITEQKKSLEGILCN 532 +TEQ ++ + + Sbjct: 686 LTEQHRAEQELRDR 699 >gi|186471840|ref|YP_001863158.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum STM815] gi|184198149|gb|ACC76112.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum STM815] Length = 694 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 143/691 (20%), Positives = 269/691 (38%), Gaps = 53/691 (7%) Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 + S + + + SI + + F ++ + Sbjct: 41 RLWLTGGAFAMGLGIWSMHFIGMLAFSLPIRLGYDPLVTLLSLSIAVASSAFALWLVCQQ 100 Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 A L+ + + M T ++P +V + L + I V +A Sbjct: 101 TLPAGRLVGG--AVLMGLGVAGMHYTGMAALR-MEPGIVYDVPLFALSIVIAVAASGVAL 157 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-----HGP 448 + + R G+ ++ + + G +GS+ G Sbjct: 158 KTAF-SLRHNSRRMRPLRAGAAIVMGLAIVGMHYTGMSAA-----GFPAGSLCTAATEGV 211 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 WL + L L + R+ N Sbjct: 212 NGTWLALL------IIVVTLAVTAVALTISLLEDLRLET-----------------ENAA 248 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + R + ++ + + A D LT +PNR RL L + +D + Sbjct: 249 LTRSLA---------EANQELGYLALHDALTKLPNRVLLEGRLEEALARARSDGG-EFAL 298 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 M +D+D +K +ND G VGD +LV + R+ ++ D LAR+ G+ F +++ E Sbjct: 299 MFMDLDGFKVVNDAYGHQVGDRLLVQVAERLASAVRGNDTLARVGGDEFVLLVPDEG-RA 357 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A + +I P ++ ++ ++ SIG A + + L +A+ AMYHAK G Sbjct: 358 GATIIAGRLLAAIGAPFDVDGHDLRISTSIGIAMCPADGALVHDALMHADAAMYHAKSMG 417 Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N F ++ ++ + +DL A+E +EL L Y P D I G+EAL++W H Sbjct: 418 RNAHCFFDASMNENMQCQLQLTQDLRAALERNELVLHYQPQFAAPDGPITGVEALVRWAH 477 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 PK G I EF+ +AE+ +I I ++L+ R + W D + +N++ Sbjct: 478 PKRGMIGPDEFIPLAEKTGLIVPIGEWVLDEACRQVREWLD-TGACDWNVAVNLSPVQFS 536 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 +L ++ +++ P + + +ES M + E S +L L ++G+ +++DDFGT Sbjct: 537 HPQLTALVRDTLARHRVDPRHLTIEVTESAAMRDVEASLRILQALHEMGVRISIDDFGTG 596 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L YL +P +K + + AI+ S++ + + I+A+ + Sbjct: 597 YSSLMYLKRLPASELKIDRGFVRELAHDAEDAAIVSSVVALGHTLGIDIVAEGVETATQK 656 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + LTR+GC+ +Q + P+ + L +E Sbjct: 657 EFLTRLGCNSLQGYLLGRPVPAADLGALSRE 687 >gi|237748732|ref|ZP_04579212.1| signal transduction protein [Oxalobacter formigenes OXCC13] gi|229380094|gb|EEO30185.1| signal transduction protein [Oxalobacter formigenes OXCC13] Length = 587 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 128/557 (22%), Positives = 257/557 (46%), Gaps = 11/557 (1%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R + V + +LG G + I+ N + + Sbjct: 29 RHKTILDNLPVGVLQISEDEQILFANSRFEEMLGYDPGKF---PKTVKDLINPNTYFHTQ 85 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 +R + Q E + R + + ++ + + + + ++ +T+ + Sbjct: 86 HTWKDMWHTQR-QFQVEIKFRNKNGLYMQTENIVKLILDEDNKPDFALIVSR-LTDPEGK 143 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + D LT +P R L ++ + + ++ +I+++K IN+ LG Sbjct: 144 PFPDQHISLFDPLTSLPTRNYLDSFLDGAIERTRQSGKMLGILIF-NINRFKIINESLGH 202 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD +L ++R+ + D + RL G+ F +IL + + I A + K ++ P Sbjct: 203 DAGDALLKLFSKRLIHGIDERDTVVRLGGDEFVVILEKIDKASDIVAIATRLLKMVSEPS 262 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 L +I++ SIG + + ++ +LK A +A+ A+ R + + + Sbjct: 263 QLSGHDISIAVSIGGSIYPRDSTDANTLLKYAGVALTEARKRRSSVARFYNPDMIITPMQ 322 Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + + +L A++ +E L Y P + L +IVGLEALI+W HP G IS++ F+ AEE Sbjct: 323 RLMHESELRRALDKNEFILYYQPRLSLATGKIVGLEALIRWKHPSEGIISAANFIPTAEE 382 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 + +I+ I F L + R ++ W+ + +P + + +N++SKDL +L + + ++++ Sbjct: 383 IGLIEKITEFTLTAVTRQLLDWQSRK-VPVVPVALNVSSKDLYTPDLTQSILHIVTEMGL 441 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 P+ +L +ES ++ + ++ + L +R +G+++++DDFGT S L YL +P D +K Sbjct: 442 PPTLYELEITESSLIEDMDKVKTNLMEIRDLGVTISIDDFGTGYSSLRYLSSLPIDLLKI 501 Query: 884 NGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 +GS ++G TE +I+ S I +A ++ +IA+ + + L GCD IQ + Sbjct: 502 DGSFISGLTESDGIQSIIESTIDLAHSLGMPVIAEGVATHEQLAFLCTKGCDQIQGYLCS 561 Query: 942 SPLGFNSILKLLKERFP 958 PL + L + P Sbjct: 562 PPLPPEKVEIFLAKHQP 578 >gi|313200980|ref|YP_004039638.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gi|312440296|gb|ADQ84402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 748 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 153/772 (19%), Positives = 289/772 (37%), Gaps = 49/772 (6%) Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV----NLPSGELLIW 253 + + Y+ ++ +AW+ I V + + W Sbjct: 10 FVFAAIVASLLVYVQLD--VVPLAVCLAWMTFFLIVYGLRKALVWVYKRTPVHAYPPGFW 67 Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313 I + + H + + Y + A Sbjct: 68 LNWFRALSGLCGIAWGLSGIFLFYPHDTAHQAFLTLALAGVCGGAVMAYATDKPTAYAF- 126 Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373 + G ++L+ +L ++ + RL +I+ Sbjct: 127 ----AGGLILLGLPRFFWGGNHFSMLMAVNLLLFILYVTIASFKLANRLRENIV------ 176 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++ H + I + +RQ L + + V +WD+ + Sbjct: 177 ----------LRIMAH-----ESQEAINAMAQRQKLHIDHTPLAVIEWDVNFRVTSWNAA 221 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 I G G ++ I D + S + + G ++ D + Sbjct: 222 AEHIFGYPPSEALGRHMSF---IVPPDGQMMAQDIMSKLAHEAGGQHWQHDNVRRDGRVI 278 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + N I+ + + D T KK+ + I A+ D LT +PNR+ ++RL+ Sbjct: 279 HCEWFNTAIKNDQNRIIGFASLIQDETAYKKAQDEIERLAYFDALTNLPNRRLLMERLSQ 338 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L+ S + + +M ID+D +K +ND G A GD +L + R+ ++ D +AR+ Sbjct: 339 ALNNSRSSHRI-GGLMFIDLDNFKTLNDSRGHAFGDLLLKEVAARLLRAVRNHDTVARIG 397 Query: 614 GNRFGIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 G+ F ++L A A + I++P +L + +ASIG + + Sbjct: 398 GDEFVLLLEDIGRDEGAAIQTASQIAEKILADISLPFDLGNYKHQCSASIGICMFYRQGM 457 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726 E+LK A+ AMY K G N+ F S +K DL A+ + L Y P Sbjct: 458 HVEEVLKRADAAMYETKRAGRNNYRFFDESMLPVIDSRASLKNDLRFALSLGQFELYYQP 517 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + G E L++W HP+ G + EF+ +AEE MI I ++L++ + W Sbjct: 518 QVDGE-LRTTGAEVLLRWHHPERGMVPPGEFIPLAEESGMIIPIGNWVLQQACMQLGKWS 576 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 A + + +N+++ + E ++ + ++ + + L +ES+V+ N + Sbjct: 577 HHAKTSQLRLSVNVSAMQFGQADFVEQVRHALLESGCNEKLLVLELTESLVIQNIDDIVS 636 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-----KRIAILRS 901 + L+ IG+SL++DDFG S LS L +P D++K + S + + I+++ Sbjct: 637 KMQALKSIGVSLSMDDFGLGYSSLSLLLRLPLDSLKIDQSFVREIQDNAPKNDSAVIVQT 696 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I+ M KN+ +IA+ I L ++GC Q P + L Sbjct: 697 IVAMGKNLGLDVIAEGIEEPYQQAFLEQVGCHAYQGYLYGRPSELSVFEHTL 748 >gi|297537576|ref|YP_003673345.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297256923|gb|ADI28768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera sp. 301] Length = 828 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 139/596 (23%), Positives = 278/596 (46%), Gaps = 11/596 (1%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVR 425 +V+ +IG + + Q + ++ + + + +D+ Sbjct: 237 WAETFKSCVVVNDEVIGTVGFARDITKEQYLQAQVAKRQQDYMTLVKNLPITIVRYDLDC 296 Query: 426 DRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 RV + G++ P W PYI F L + ++ + +E Sbjct: 297 KRVFVSAHCDEQYGVSDKVYLFKTPEEEWSPYILNLSAKEFTQRLQKVMQTQKKQ-SFEI 355 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 + F +++ P + + ++ + IA DITE + + I AF D LT +PN Sbjct: 356 HAKHG-GAFSVNQVKLIPEYDEHHNVTGALTIATDITENAEYRQTIEHLAFHDVLTDLPN 414 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R+ F L ++ + V+++D+D +K IND +G AVGD +L+ + RI + + Sbjct: 415 RRFFNQALNKAIERAEQHQ-AAFAVLIMDLDHFKTINDTMGHAVGDKLLIGVADRIKQNV 473 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 AR+ G+ F I++ ++ + + ++ + + P + V+ASIG A + Sbjct: 474 DDSYFFARMGGDEFAILIHGYESTEALIAKSASLLEQVVQPYYIAGAGYFVSASIGVACY 533 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELY 721 +++K A+ AMY AK +G N+ + + ++ ++ I+ L A+ N ELY Sbjct: 534 PKDSRDVDDLIKYADSAMYSAKQKGRNNCQFYSPTLTADMRYQLEIETALRYALSNDELY 593 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L + PII + + ++G+EAL +W G +S + F+ +AEE +I I +++++ Sbjct: 594 LEFQPIIEMQTKRVIGVEALCRWVSAALGEVSPASFIQVAEESGLIVEIGQWIIKQGFIA 653 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 + + I I IN++S+ ++ + ++AL+ +T PS IK +E +++ + Sbjct: 654 AKIINEASTEL-ISISINLSSRQFVELNFLQRIKALLDETKCEPSWIKFEITEGLLLQDA 712 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAIL 899 +L +IGI +++DDFGT S L+YL P VK + S + T R ++ Sbjct: 713 YEVHRVLDAFDEIGIRISIDDFGTGYSALAYLNKFPIHQVKVDRSFINEITTNRSHALLV 772 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++I+ M +++ ++A+ + E L GC Y Q + +G ++++ +LK+ Sbjct: 773 KAIVAMVQSLGKELVAEGVETEAQASLLQSYGCQYAQGFLFSKSVGLDNLMLMLKK 828 >gi|229159634|ref|ZP_04287646.1| Sensory box/GGDEF [Bacillus cereus R309803] gi|228623838|gb|EEK80652.1| Sensory box/GGDEF [Bacillus cereus R309803] Length = 689 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 122/549 (22%), Positives = 250/549 (45%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G + +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGKITYANPATYEIFGYRYEELSNKFI--FKFINKEYEKDFQM 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKEALQGRATQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + A+ D LTG+ NR S ++L L ++N+ ++ ID+D++ IND G Sbjct: 265 KRTEYLAYYDQLTGLMNRISCTNKLNVFL-----NENINFALVFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A + K+I+ Sbjct: 320 EGDKVLQKVTECLSNLQIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKNILKNISNYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCNGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S S+F+ +AE Sbjct: 439 FIIENQLYRAIEKNEFFLYYQPQVNIETKKIASMEALIRWENKELGFVSPSQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + I W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVNQVCKQIREWLNKDYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 PHLLGIEVTEGALI-HKDLSKRVLLQLKEQNVKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A + +IA+ + ++ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLGLNVIAEGVEKVEQVQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + + Sbjct: 677 PLSKHDVEN 685 >gi|332531933|ref|ZP_08407817.1| hypothetical protein PH505_ab00560 [Pseudoalteromonas haloplanktis ANT/505] gi|332038560|gb|EGI75003.1| hypothetical protein PH505_ab00560 [Pseudoalteromonas haloplanktis ANT/505] Length = 1034 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 152/576 (26%), Positives = 262/576 (45%), Gaps = 12/576 (2%) Query: 388 QHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++V+ +Q ++ SL S + + D P + + Sbjct: 458 EYVVVLRDITQRKINEEALHLASLVYNNSSEGMAITDPAGIIFDVNPAFCKTTLYSKEEV 517 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G + L +D++ + + + GR Q E R + Q + + I + ++ Sbjct: 518 IGRSSSILSS-GKHDKNFYNKMWSEL--QQTGRWQGEVINRKKNGQLYSEWLTIDTVYDT 574 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 N +R I I D+TE+K++ E I A D+LT +PNR +RL S + + Sbjct: 575 NNAPIRRIAIFTDLTEKKQADETIWRQAHYDHLTDLPNRLELKERLNQRFS-SIVTPDNQ 633 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 VM++DID +K IND LG GD++L +++RI + K + +AR+ G+ F I+ Sbjct: 634 LVVMLLDIDHFKDINDTLGHHYGDNLLKLVSQRIVQSAKNAEFVARIGGDEFVIVFNRIK 693 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ I A + S++ ++L E+ ++AS+G A + + ++LK A+ AMY AK Sbjct: 694 STRHINQIASNILLSLSSALHLENEELFISASMGIACAPNDGENTEQLLKAADQAMYKAK 753 Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N E F + +DL A+E + L Y PI+ L D I EALI+ Sbjct: 754 SNGRNCFEFFSADMREYAHARMVLLKDLRSAIELEQFELFYQPIVALNDLHIHKAEALIR 813 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP+ G IS F+ +AEE I AI F+ + + + + + I +N++ Sbjct: 814 WQHPEKGLISPVAFIPLAEETRQINAIGQFVFAQTLQTLNDIKTLTDDT-FQISVNVSPV 872 Query: 804 DLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L E + ++ S I +E +++ ++ L + K G+ L LDD Sbjct: 873 QLSTPESGIDEWYDMLKAAKLPASSIVAEITEGLMINPEALTQRRLKEIVKSGMQLALDD 932 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL + D +K + + A+ +II MA + +IA+ I Sbjct: 933 FGTGYSSLAYLQEMDTDYLKIDKRFVDNIQVGSQELALCEAIIVMAHQLGLKVIAEGIET 992 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E+ ++ L GCDY Q + PL +S + LL ++ Sbjct: 993 ELQMQLLLEAGCDYGQGYLFSRPLNKSSFMALLADK 1028 >gi|228961612|ref|ZP_04123221.1| Sensory box protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798094|gb|EEM45098.1| Sensory box protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 735 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 145/562 (25%), Positives = 272/562 (48%), Gaps = 11/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R D V+ ++ + ++ + + + +I Sbjct: 178 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 235 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + L R L E R + + ++++ I + P N +++ GIA D Sbjct: 236 KDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 292 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT + + + AF D LTG+PNR+ F L IL+ + T+ N VM +D+D++KK Sbjct: 293 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVMFLDLDRFKK 351 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L + A + Sbjct: 352 INDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQIL 411 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + E+++T SIG A + +E++KNA++AMY AK G N F Sbjct: 412 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKGNGKNRFVFFSKE 471 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +++ ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++ Sbjct: 472 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQ 531 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I + ++L + W +Q + + +N++ +L + Sbjct: 532 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHTDLIPTISK 590 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL Sbjct: 591 VLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 650 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + G + AI+ SII ++K + +IA+ + E + + L + CD+ Sbjct: 651 PINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLKVIAEGVETEEEWEFLHKQNCDH 710 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ + LL ++ Sbjct: 711 IQGFFISKPVSSKDVWMLLHKK 732 >gi|254489795|ref|ZP_05102990.1| hypothetical protein MDMS009_126 [Methylophaga thiooxidans DMS010] gi|224464880|gb|EEF81134.1| hypothetical protein MDMS009_126 [Methylophaga thiooxydans DMS010] Length = 763 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 134/579 (23%), Positives = 261/579 (45%), Gaps = 10/579 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + Q +F E ++ + + V D P I G + Sbjct: 180 LMTMVDISHEKQVEQNLFQQNEYLNIILSSVDEGVIATDTRGLVTFINPKAELITGWKTS 239 Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G I + + N + + +R R+ ++ + D + + P Sbjct: 240 EVLGHSIEEVVQLRDPETKVNTENPIRVCLRQHRITRMPLNTQLVSKDGRLSQIEQTAAP 299 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + +G + + + +DI++ + D LT +PNR ++L D + Sbjct: 300 LRDVDGKLSGAVAVIHDISQSISLSLLRSQASSYDQLTNVPNRIFIREKLQLACD-AVKA 358 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++R + VID+D +K ND G GD VL SL RR+ E + + + RL + F +I Sbjct: 359 SDMRMAMAVIDVDYFKSFNDAHGNGTGDAVLKSLARRLFENYEPGNSIGRLGADEFMVIF 418 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 +++ I A+ + P + + +++ SIG + + ++++ A+ A+ Sbjct: 419 RDIDDNDGIDTTLHALLDLLRTPFRVEDTSYSLSVSIGVSVIDAYCNEPDQVMQQADAAL 478 Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGL 738 Y AK GG+ F S R +E L ++ N+E L + Y P + L +++G+ Sbjct: 479 YRAKFEGGDVYRVFTKELEVSLLQRRSTEELLRRSLINTEKLEVFYQPKVDLATSQVIGV 538 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL + +S EF+ IAEE +I + +LER +D W + + I + + Sbjct: 539 EALARLRDDSGKIVSPIEFIPIAEETGLIIQLGNLVLERACQDCYEWNQKGH--KIPVSV 596 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI++ L N+L ++ + + P+ ++L +E+ + + E + +L++IGIS+ Sbjct: 597 NISAVQCLHNDLVNTIETSMQTSGLEPALLELEVTETAFIRDFEDTLEKFHQLKQIGISI 656 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFG S L+YL + D +K + S + G + I+++II + +++ IIA+ Sbjct: 657 SIDDFGKGYSNLTYLRRLEVDKLKLDMSYVRGMLENPRDYEIVKTIINLGQSMNLDIIAE 716 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I E L ++GC Y Q + A PL +++L L + Sbjct: 717 GIETEFHRDALLKLGCQYGQGYYYAKPLPHDALLDYLNK 755 >gi|288959829|ref|YP_003450169.1| signal transduction protein [Azospirillum sp. B510] gi|288912137|dbj|BAI73625.1| signal transduction protein [Azospirillum sp. B510] Length = 624 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 150/575 (26%), Positives = 264/575 (45%), Gaps = 33/575 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG----LASGSMHGPIRNWLPYIHINDRD 462 L + + V VT P + G +A + G + Sbjct: 40 LRLVLDNMAEGVCVAGCDGRIVTANPAAEAVFGPLGGVAFDARFGSRLRLADGVSP--CP 97 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQF------------HWMIIRIRPMSNSNGDIL 510 + + + + A W+ + RP+ +G + Sbjct: 98 EALWPMGRAIRGETMDRESLYLAPAMSGGPQTDGVGAGIGAGVWLRVNARPLV-QDGRSV 156 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + + DIT+ K + I A D LTG+ NR F RL + + D + R VM+ Sbjct: 157 GGVLVFRDITQVKAVEDRIAWLAHFDPLTGLSNRVEFRRRLEMAIASARQDGS-RLAVML 215 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D D +K+IND G AVGD++LV++ R+ + L ++ARL G+ F I++ + + + Sbjct: 216 LDFDGFKEINDQFGHAVGDELLVAVAGRLRDALGSGAVIARLGGDEFTILVEEDGD-GTL 274 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 D + + +++A P L +TASIG + + T ++L+ A++AMY AK RGG+ Sbjct: 275 TDASHTLIRALAEPFPLTSGRHRLTASIGAVRYPAEADTIDDLLRMADMAMYRAKERGGS 334 Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 V + + + +R ++ L A+E E +LVY P++ VG+EAL++W P Sbjct: 335 AVCRYDPAMMAAAAERTRLRGLLAGALERGEFHLVYQPLVEAAGGRPVGVEALLRWR-PS 393 Query: 749 WG--NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 + S F+ + E +I I ++LE R I +W D P + I +N++ + L Sbjct: 394 GAAAPVPPSAFIPLCEASGLILDIGRWVLETACRQIRTWAD-GGGPSLEIAVNVSPRQLR 452 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L E ++ +++ T P+ + L +E +++ + E SR +L L+++G+ L LDDFGT Sbjct: 453 DPTLLEDVRRVLAATGIDPALLVLEVTEGLLIEDMEYSRHVLTGLKRLGVRLALDDFGTG 512 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS------TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 S LSYL +PFD +K +GS A+ R+II +A+++ T++A+ + Sbjct: 513 YSSLSYLNSLPFDVLKMDGSFTRNLAAAELDNAGGQAVARAIIGLARSLSMTLVAEGVET 572 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L GC IQ + P + +L+ Sbjct: 573 PAQHAWLAANGCSLIQGYLIGRPEPAPAAAELIDR 607 >gi|300863750|ref|ZP_07108681.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] gi|300338257|emb|CBN53827.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506] Length = 1074 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 133/593 (22%), Positives = 263/593 (44%), Gaps = 17/593 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++ I + Q ER L + D P I Sbjct: 478 LLEITAERCAMAILNAQLYQQTKELQERLQLQIERMPIGYIFTDPESRIQEWNPAAEQIF 537 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + + G + + R I + Q + + Sbjct: 538 GFSKEEVLGRHYDI--IVPPEVRSEIGDIFQQLF-HSEHTKQNVNENLTKTGEIITCDWQ 594 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + +G ++ + + +IT Q+++ + + AF D +T +PN+ F+ L S Sbjct: 595 NTTIKKEDGAVIGVLSMVQNITLQQRAEKQLWKYAFYDQITDLPNQTFFIAWLKQFAVRS 654 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD---------IL 609 ++ V+ +D+ +++ + +G V +++L+++ R+ D + Sbjct: 655 LCEETTLFAVLYLDLSRFQLVKYSMGQKVANELLMAVAERLQTCRPKNDEFEQLPKINSI 714 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669 A + + F I+L + A +++ ++ P L E+ +SIG + + Sbjct: 715 AHVGPDEFAILLENIQEESDAIAIAEHIQQQLSAPFKLDGCELFTDSSIGIVLSSINYQQ 774 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPI 727 ++L+ AE AM AK G + F S + + DL A+EN E + Y PI Sbjct: 775 PEQLLQAAETAMNQAKGLGKSRYAVFNTSMQERAVRPLHLDADLRRALENREFQVYYQPI 834 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 + L++ +I+G EAL++W HP+ G +S +EF+ +AEE +I + ++L I++W+ Sbjct: 835 LSLVNHQIIGFEALVRWLHPERGLVSPAEFIPLAEESSLIIPLGAWVLCEATSQIMAWQQ 894 Query: 788 QAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 + PP+ I +N+++ L+ + E + L+ +T +P +KL +E+ VM N + Sbjct: 895 KFPTNPPLSISVNVSAVQLVQSCFIERIDRLLKETGINPLSLKLEITETAVMENAKSVTN 954 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIP 904 +L L+ GI L++DDFGT S LSYL PFDT+K + + ++ K + I+R+II Sbjct: 955 ILEYLKDRGIHLSIDDFGTGYSSLSYLHTFPFDTLKIDRAFVSRMSIDPKNLEIIRTIII 1014 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +A N+ ++A+ I + +L ++ C++ Q + P+ + +LL+ + Sbjct: 1015 LAHNLGMDLVAEGIETREQLNQLQQLQCEHGQGYLFSRPVDREAAERLLEMQL 1067 Score = 71.5 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 4/149 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + + ++ + E+ V + ++ D P ILG Sbjct: 183 IGISRDITEIKQATEVLQKTKEKLQAVVSAAPLAIFVTDRQNYVKMWNPAAEKILGWRET 242 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + LP I ++ + D + E + + + + + P+ Sbjct: 243 EVLNSP---LPIIPPQKQEECEVVRDRVFQGDS-LVNLEAKAVKRNGSEIDISLSLAPLY 298 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532 + +G I + + DI+++K++ E Sbjct: 299 DIDGQINSILSVIADISDRKRAEEERDRL 327 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 14/200 (7%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 + WIL+ +G + N IQ VL+ + + +I+ Sbjct: 11 LAYRTVFIYAFFSSLWILLSDTVLGSLTQTSGFFTN--IQTLKGWVFVLVTSGLIYALIR 68 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + + G+ D ++ DI + A +LG + G Sbjct: 69 RNF------HSLQESYNLLEAIIEGTTDAIFVKDIEGRYLMVNSTTAQLLGRPKSEILGK 122 Query: 449 -IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 RN+ ++ + + EF + +N I + +G Sbjct: 123 DDRNFFSL---ETASQYQENDRAIFASGETQTIEEFGII--NNIKRVYIATKYLCRDKSG 177 Query: 508 DILRYIGIANDITEQKKSLE 527 + IGI+ DITE K++ E Sbjct: 178 KTIGLIGISRDITEIKQATE 197 >gi|53802317|ref|YP_112991.1| CBS/GGDEF/EAL domain-containing protein [Methylococcus capsulatus str. Bath] gi|53756078|gb|AAU90369.1| CBS/GGDEF/EAL domain protein [Methylococcus capsulatus str. Bath] Length = 594 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 134/526 (25%), Positives = 241/526 (45%), Gaps = 13/526 (2%) Query: 440 LASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + + ++H RD + + + +F+ ++ + + +R Sbjct: 68 MRPVGLIDRYSLVEQFLHPYSRDLYHKHSIAAFMDPEPVIVEADSSIDDLSRIIIDAGMR 127 Query: 499 IRP---MSNSNGDILRYIGIANDITEQKKSLEGIL--CNAFQDNLTGIPNRQSFLDRLTT 553 + +G L IG +D+ E+ + + A D LT +PNR DRL Sbjct: 128 HMVSGFIVTEDGLYLG-IGSGHDLFEEVANRKQNHLYHLAHYDPLTSLPNRLLLNDRLKR 186 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 R ++ ID+D++K +ND LG A GD +L + R ++ D +ARL Sbjct: 187 ACLRGQR-GGYRIALLFIDLDRFKLVNDTLGHAAGDQLLQGVAGRFAACVRKVDTVARLG 245 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F ++L + A + +S+ P + EIT +ASIG + T + Sbjct: 246 GDEFTVLLEPVQGPDEALAVAAKLAQSLERPFLIQNHEITTSASIGVVLFPEHDATVEGL 305 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 ++ A+ AMY AK G N F + +RV ++ L A+E E + P + Sbjct: 306 MRKADAAMYCAKREGRNRFALFTEEMNSTVVERVTLESYLNAALEKGEFCCHFQPQMATA 365 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 D+ IVG+EAL++W +P G + +F+ +AE+ +I + L+ LE + W Q Sbjct: 366 DDRIVGVEALLRWTNPVLGRVPPLKFIPVAEDTGLILPLGLWALETACAQQVRWLSQGL- 424 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 PP+ + +NI+ + E C+ ++A++ +T ++L +ES VM + E S +L L Sbjct: 425 PPLRMAVNISPLQFRNREFCDQVRAIVQRTGIRAEHLELELTESAVMADAESSVGILREL 484 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNI 909 R GI L +DDFGT S LSYL P D +K + S ++G I+++I+ + ++ Sbjct: 485 RDSGIRLAIDDFGTGYSSLSYLRKFPLDRLKIDRSFVSGIDRIPANELIVKAIVALGGSL 544 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ + +++ + R GC Q ++ PL ++ Sbjct: 545 GLDVIAEGVETPEELECIERCGCSEYQGFRLSEPLTAEDFAHWFED 590 >gi|118581086|ref|YP_902336.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] gi|118503796|gb|ABL00279.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM 2379] Length = 1023 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 152/650 (23%), Positives = 284/650 (43%), Gaps = 27/650 (4%) Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI---IQPALVGGLVLIVILIGF 384 + + + +L + LW+ I++ + + I GL+ + I Sbjct: 6 FRAFRLPPLSRPSPLTIVLFYALTGMLWIGISEMITEALAGEIHTFPRPGLLKGTLFILL 65 Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI----VRDRVTTTPDIATILGL 440 T I L +F + + + G A S D + +I + G Sbjct: 66 TSILLHLLIRFFVRELRTTGNILQAAFQASPDAI---NIKRLKDGVFLKINSGFTRTFGY 122 Query: 441 ASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G + L DR LDS + R + R + + + Sbjct: 123 SEAETIGRTASALELWESSADRLR----LDSCLEQSRDVRDFHALFRTREGKLFRGSLTA 178 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 R ++ + L + I D T + ++ E A D TG+PN F+DRL + A Sbjct: 179 RRVNLEGDECL--VTIVRDRTAELEAREEAEKLANYDPETGLPNHSLFMDRLERTIGQDA 236 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 D N ++ I + YK I DV G ++ L+R+I ++ D +AR+ + F + Sbjct: 237 RDRNKTV-IIYISLTGYKAIVDVFGHDGESRIIKPLSRQIVAAVRQHDSVARIRHDEFAV 295 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L N + +++ A+P+ + E + A +G A + + +T++ +++NA + Sbjct: 296 MLGGVTNDGDVTTILNRLQQIFAVPLPTSQGECAIPACMGVACFPTDGLTANIIMQNAHI 355 Query: 680 AMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 AM A+ G S ++ +R I+ + A++ E +L Y P + + D ++ G+ Sbjct: 356 AMNQARQAGIPLQFYSESMNRKAMERFAIETCMLRAIDAGEFFLCYQPKVEIHDMKLTGV 415 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W P G I F+ +AEE MI + ++L R +W+D P + + Sbjct: 416 EALVRWQRPGEGVIPPDRFIALAEENGMIVRLGGWILGEACRQNRAWQDAGL-PRTVVSV 474 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI+++ L +N E ++ ++ +T P + L +ESVVM N + L RL+++G+ + Sbjct: 475 NISARQLRENSFVEQVERILEETGLEPCYLDLELTESVVMANSDEIVQKLTRLKQLGVGI 534 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 ++DDFGT S LSYL ++P DT+K + S + AI+ ++I M + T+IA+ Sbjct: 535 SVDDFGTGYSSLSYLKHLPVDTIKVDRSFVRDIVHDPDDKAIVEAVIAMGHALGLTVIAE 594 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER-----FPLVK 961 + ++ L C+ Q + + PL + + L + FP K Sbjct: 595 GVETLEQLEFLRSQNCNQAQGYYFSKPLDSGHLARFLSKHCQEMSFPPAK 644 Score = 65.7 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 7/99 (7%) Query: 537 NLTGIP-NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 LTG+P N + + ++ + + ID+D +K ND G GD V+ L Sbjct: 821 PLTGMPGN-----ESIQREINNRLASGH-PFDIAYIDVDNFKPYNDYYGFQRGDTVIKVL 874 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 I + G+ F +I + + Sbjct: 875 GEIITTATDTTGFCGHIGGDDFIVITEPHQSPGVASRII 913 >gi|254483132|ref|ZP_05096366.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma proteobacterium HTCC2148] gi|214036654|gb|EEB77327.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma proteobacterium HTCC2148] Length = 570 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 124/458 (27%), Positives = 227/458 (49%), Gaps = 24/458 (5%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 K+ + + A+ D LT +PNR+SF ++L IL ++ ID+D +K+IND Sbjct: 108 LKRQEDRLRYLAYYDPLTSLPNRRSFNEQLNRILKRCRRH-KTNAALLFIDLDHFKRIND 166 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDIL-------------------ARLSGNRFGIILI 622 +G GD +LV + +R+ L+ D + ARL G+ F ++L Sbjct: 167 SIGHGRGDRLLVEIAKRLTVELREDDAINYYSDNSAEDDSNNSNTEIARLGGDEFTVVLS 226 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 N+ ++ A + +++ PI L VT S+G A + +++NA+ AMY Sbjct: 227 DIPNAGQVERVAQRILAALSEPIALQSHNPVVTPSVGIALFPQDGEDPDTLVRNADTAMY 286 Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G + +++ ++E+L A++N+EL L Y P + ++V +EA Sbjct: 287 AAKAQGRACFRFYDEEMNAKAVEQLKMEEELRDAMQNNELELRYQPQVDTATGDVVSMEA 346 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W H G +S +F+ +AE I + ++++ +AR W D +PP + +NI Sbjct: 347 LVRWKHSTRGMVSPLDFIPVAERTGQIIELGEWVMKEVARHCNYW-DSMGLPPFRVCVNI 405 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + ++L + + ++ SR++L +ES +M + + + L +L+ +G+ L + Sbjct: 406 SPLQFNQSDLPRSIGEFLRESGMQASRLELELTESAIMTDAQTNIEKLQQLKALGLELAV 465 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DDFGT S LSYL P DT+K + S + T AI+ +II ++K + +IA+ I Sbjct: 466 DDFGTGYSSLSYLKRFPIDTLKIDQSFVADLGTTDGAAIVDAIIALSKTLNLRVIAEGIE 525 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + + L G D +Q A P+ + +L++ F Sbjct: 526 EKEQLDYLVARGADLLQGYFFARPIYPEDVPDMLRQNF 563 >gi|332535508|ref|ZP_08411286.1| putative sensory box protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035085|gb|EGI71601.1| putative sensory box protein [Pseudoalteromonas haloplanktis ANT/505] Length = 1500 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 122/551 (22%), Positives = 237/551 (43%), Gaps = 15/551 (2%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-LPYIHINDRDNFRTIL 468 A + D V+ D + + + T ++ S+ N + + D L Sbjct: 953 AFEQTRDWVFILDKNLNIRASNKSLQTAFNFSAESLSSRTLNLGISRSNRFDYLRIMQKL 1012 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 E V A+ + ++++I ++++ + Y+ I DI QK + Sbjct: 1013 SV-----GEHFSCEDSVVLANGESRHVLVKISAVADNEQRLNSYVIILTDINAQKSAENE 1067 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A D LTG+PNR F DR+ L+ + + ++ I+I ++K ND LG Sbjct: 1068 LHLLANYDALTGLPNRTLFNDRVEHALEQAKLH-GCKVALLHINIKRFKYFNDSLGHEAA 1126 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D+++ + R+ L+ D +AR G+ F +++ + ++ + + I + Sbjct: 1127 DELIKEVAERLKCSLRPSDSVARFGGDEFVVLVEDIHQIEQVLIICTKLMDCVNQNIAIN 1186 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVM 706 + + V SIG + +LK A +A+YHAK G ++ + Sbjct: 1187 GQVVNVNLSIGVSISPDDAEQGPALLKAASIALYHAKDSLEGRYQFYKQEMNQHVQRALH 1246 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A E Y PII ++ G E L++W P+ + + EF L AE + + Sbjct: 1247 LESQLTRAYREEEFCNYYQPIINAKSQKTEGFEVLLRW--PENKLVQTQEFSLAAEGIGL 1304 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I I L R ++ WR P +++ IN+++ D EL ++ ++ + S Sbjct: 1305 ITKIMLQTFARALLELKEWRKA--SPNLYLSINLSALDFEFKELVPEIKKALNNSGVSSE 1362 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 I +ES++M + + + + +L+K+G L +DDFGT + L+YL P D +K + S Sbjct: 1363 AIVFEITESILMRDSKEALHSMEQLKKLGCRLYMDDFGTGYASLTYLKRFPIDVLKIDRS 1422 Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + AI++S + +A ++ +A+ + + L GC + Q + P+ Sbjct: 1423 FVQDIGIDSDDEAIIQSTLALADSLGKECVAEGVESSHQLAFLKARGCKHFQGYLFSKPV 1482 Query: 945 GFNSILKLLKE 955 +L L+ Sbjct: 1483 PNTEVLALINR 1493 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 10/165 (6%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIF-------SDGERQSLAVLGSGDIVWDWDIVR 425 +VL +L V V+ + + R LA+ GS VWDW+ Sbjct: 787 YFMVLYAMLFIGFVAMWVMRRNKIQRILLAANKESKESEARLKLALEGSESGVWDWESSN 846 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + P +A+ LG + ++ + +L IH D+ FR F+ +G +R+ Sbjct: 847 PSIYQ-PRLASELGYENETV--SLDEYLSKIHPQDKQLFRLEWLEFLSTDKGYFNCTYRL 903 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 R A + W + + + + G ++T + E L Sbjct: 904 RHAKGYWRWYKDFGKVVEWDDKTPQKVAGTYTNMTREMVFEEHAL 948 >gi|77361433|ref|YP_341008.1| sensory box protein [Pseudoalteromonas haloplanktis TAC125] gi|76876344|emb|CAI87566.1| conserved protein of unknown function ; putative sensory box protein [Pseudoalteromonas haloplanktis TAC125] Length = 1007 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 139/561 (24%), Positives = 248/561 (44%), Gaps = 14/561 (2%) Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + E LA S + + D P + + + + L Sbjct: 445 QNEEALHLAALVYGNSSEGMAITDENGIIFDVNPAFSKTTLFSKEEVINKTISVLSS-GK 503 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D+ ++ + GR Q E R + + + + I + + N +R I I D Sbjct: 504 HDKTFYQALWAEL--TSTGRWQGEIINRRKNGELYVEWLTIDTVYDDNNIPVRRIAIFTD 561 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +TE+K++ I A D+LT +PNR RL ++ + +M++DID +K Sbjct: 562 LTEKKQADALIWKQAHFDHLTDLPNRLELKKRLNECFMRV-ENNAEQLVIMLLDIDHFKD 620 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG GD +L +++RI E K + +AR+ G+ F I+ I A + Sbjct: 621 VNDTLGHHYGDALLKFVSQRILESAKNAEFVARIGGDEFVIVFSKIK-EQHIKQIAENIL 679 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 S++ I + E+ ++ASIG AS + + ++LK A+ AMY AK G N E F Sbjct: 680 LSLSSAIYIENEELFISASIGIASAPNDGENTEQLLKAADQAMYKAKVNGRNGFEFFSHD 739 Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ + ++L A+E + L Y PI+ L D + E LI+W HP+ G IS ++ Sbjct: 740 MREKAQMRMLLLKELRTAIELEQFELFYQPIVCLKDLHVHKAEGLIRWRHPEKGLISPAD 799 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQ 815 F+ +AEE I + F+ + + + + + +N++ L + + Sbjct: 800 FIPLAEETRQINILGQFVFSQALQTLNDIKAHITN-DFQLSVNVSPIQLSTPDSGIDEWG 858 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 A+++ S I +E +++ ++ L L + G+ L LDDFGT S L+YL Sbjct: 859 AMLNAANLPASSIVAEITEGLMVNPEALTQSRLKALVQSGMQLALDDFGTGYSSLAYLQE 918 Query: 876 IPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 + D +K + + + ++ +II MA + +IA+ I + ++ L GCD Sbjct: 919 MDTDYLKIDKRFVDNINKGSQELVLCETIIVMAHQLGLKVIAEGIETKQQMQLLLEAGCD 978 Query: 934 YIQDSHVASPLGFNSILKLLK 954 Y Q + PL + LL Sbjct: 979 YGQGYLFSKPLPKEQFMSLLT 999 >gi|160900822|ref|YP_001566404.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160366406|gb|ABX38019.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] Length = 916 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 133/638 (20%), Positives = 269/638 (42%), Gaps = 33/638 (5%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A L + + + + R+ ++ A++ VL+ ++G+TV +++ Sbjct: 273 AHPLPKGHLWVTASLPMSSVLASWRVAAWLMVLAVMIFGVLLA-VLGWTVHRYMDRLHAA 331 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454 + + A+ D + + + + + P+++ L Sbjct: 332 RRQAQRSEQWLDQALDSMVSGFLLLDSQQRVLRWNRCYEEMFPWHADQLEPGRPLQSLLD 391 Query: 455 YIHIN--------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + + V + + ++ + R ++ + Sbjct: 392 SCPSAVGLAAAPAQAYEAKDLHRQLVLRPGVPFEQQL----PSG--RFVQMTAR-LAAED 444 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G + ND+T+ + + I AF D LT +PNR+ LDRL L+A + Sbjct: 445 G----VVITYNDVTDIRLATAEIESLAFYDPLTSLPNRRLLLDRLAQATVLAAR-EGWTG 499 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ +D+D++K +ND LG VGD +L + R+ ++ D +ARL G+ F ++L ++ Sbjct: 500 ALLFLDLDQFKMLNDTLGHEVGDQLLQQVAHRLRSAVRSSDTVARLGGDEFVVMLCELSH 559 Query: 627 SLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + L SIG + +++E+LK A++AM Sbjct: 560 EPAEAATLAQRIGEKILARLNQSYVLGAHLHRSACSIGATLFGRQPQSAAELLKQADIAM 619 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y K R G+ + F ++ DL A+ S+ L Y P L E++G E Sbjct: 620 YQIKARNGSGLCFFDPQMQVEIHQRVRMEGDLRQALAQSQFELHYQPQFTLA-GEVIGAE 678 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W HP+ G + F+ +AEE +I + ++++ + W+ A + + + +N Sbjct: 679 ALLRWRHPERGLVPPGMFIAVAEESEIIVPLGMWVIRTACEQLAIWQKDARLRHLQVAVN 738 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++++ + + +P +KL +ES+V+ N + S + +LR G+ + Sbjct: 739 VSARQFRHQNFASQVIEQVRNAGIAPHLLKLELTESLVIENVQESIDKMKQLRSHGVCFS 798 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL +P + +K + S + G I+++II MA+N+ +IA+ Sbjct: 799 MDDFGTGHSSLTYLTQLPLNQLKIDQSFVRHLGLRHTDDVIVQTIIGMARNLNLDVIAEG 858 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L GC+Y Q + P+ + +LL + Sbjct: 859 VETLEQRALLAHYGCEYFQGYLFSPPVPIRAFEQLLAK 896 >gi|330965054|gb|EGH65314.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 897 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 150/571 (26%), Positives = 268/571 (46%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGNK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFGRDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F ++L + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDN-TGQEAGQATASQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLHVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILKEEQLDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ L R+P + Sbjct: 868 DVGQGYLFDRPIPGEELIEKLT-RYPRRPSA 897 >gi|291568365|dbj|BAI90637.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 598 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 133/440 (30%), Positives = 233/440 (52%), Gaps = 5/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E + + + AF+D+LT +PNR FL+RL +D+ N V+++D D++K IN Sbjct: 155 ELEIANSKLRDMAFRDDLTNLPNRALFLERLADGIDVKQEHHNYNFVVLLLDCDRFKMIN 214 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 + LG +VGD +L+++++R+ LLK D LARL G+ F I++ + + A + +S Sbjct: 215 ESLGHSVGDQLLIAISKRLKSLLKPEDTLARLGGDEFAIMVNKIEDMAEAKAMAQKVLES 274 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P L +E+ + SIG + ML++A+ AMY AK G F S Sbjct: 275 FSHPFVLPNQEVFINVSIGISGSHLDYQKPEHMLRDADTAMYRAKDLGKGQYHIFDPSMH 334 Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + +++ I+ DL A+ N E + Y PII L +I G EAL++W HP+ I F+ Sbjct: 335 HNVSEKLQIENDLRRAINNDEFLVYYQPIIHLTTGKIAGFEALVRWQHPQKQLIHPVLFI 394 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQAL 817 IAEE +I AI +LE+ + SW+ + +FI +N++++ + +L + +Q L Sbjct: 395 PIAEETGLINAIGNLVLEKACKQFRSWQKSKLINDSMFISVNVSARQFANMDLSQQIQQL 454 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + T P +KL +ES +M NP+ + +L +K + L++DDFGT S LSYL Sbjct: 455 LEVTQLDPHCLKLEITESAIMDNPKTAVAILEGFKKQNVRLSIDDFGTGYSSLSYLHNFQ 514 Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S + + ++ I+ +AK ++ +IA+ + + L + C++ Sbjct: 515 VDTLKIDKSFVQRMDNNGSSCGLVPVIVNIAKTMKMGVIAEGVETSEQLSLLRGLECEFA 574 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + PL + +++L+ Sbjct: 575 QGYLFSQPLPESLLMELIAA 594 >gi|218529510|ref|YP_002420326.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] gi|218521813|gb|ACK82398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium chloromethanicum CM4] Length = 811 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 140/681 (20%), Positives = 272/681 (39%), Gaps = 17/681 (2%) Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339 + I+ + + + +AS L + Y + L Sbjct: 125 GRGYRISAGFALALGLAWATMPVVLFCSASSDERLLVVSIAAGLISDAYVVGPLLSVSYL 184 Query: 340 L-IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL-VLIVILIGFTVIQHVLATGYFS 397 IP + FI I + ++ A G+ V + + I + S Sbjct: 185 FAIPVIVGSFIGLARSGEPIALSIAVLLLVYATFVGVSVHRMSRLSRQRILDRVRVEDQS 244 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + I + D +W+ + +P +A LG + L Sbjct: 245 ETIGLLLNEFE---ENTSDWLWETNETGRFQHVSPRMADALGCPIERLQRSSFRDLLRAG 301 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + ++ T L + + + + W+ + +P ++ G + + G+ + Sbjct: 302 EDRDEDRTTDLLGHLRQGKAFHECLVAIETPTG-LRWLALSGKPFADQRGTLAGFRGVGS 360 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+T+++++ I A +D LTG+ NR F D S R ++ +D+D +K Sbjct: 361 DVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEACTASMR-GGPRVHLLYLDLDGFK 419 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 K+ND G GDD+L + R+ + + RL G+ F IL S + A A+ Sbjct: 420 KVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFA-ILHRSRESAEAEILAEAV 478 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 S+ P + + + SIG A ++++ A+LA+Y AK G F Sbjct: 479 IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCFEA 538 Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + + N E+ L Y P++ L D E+VG EAL++W P G +S + Sbjct: 539 DLERRVQRWRELDSAMRAGLTNGEMELHYQPLVSLQDGEVVGCEALLRWTRPGLGPVSPA 598 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 E + IAE + I + L + ++W P+ + +NI+S + + ++ Sbjct: 599 ELIPIAESTGFVITIGRWALRTACAEALTWP-----VPMRVAVNISSTHFRLPDFFQEVE 653 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 A++ T +P R+++ +ES+ + N L LR G+ + LDDFGT S LSYL Sbjct: 654 AVLDATGLAPERLEIEITESIFLANTPHVLENLQALRAKGVRIALDDFGTGYSSLSYLTQ 713 Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + + + + + +A++++I+ +A ++ + + + E + L C+ Sbjct: 714 YPVDKIKIDRAFVRDLSSRPECLAVIKAIMVIAGDLRIDVTVEGVETEQQAELLRLRRCN 773 Query: 934 YIQDSHVASPLGFNSILKLLK 954 Q + + L++ Sbjct: 774 SAQGFLYSPARPSGEVTGLIE 794 >gi|307313923|ref|ZP_07593538.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti BL225C] gi|306899197|gb|EFN29835.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti BL225C] Length = 601 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 132/583 (22%), Positives = 259/583 (44%), Gaps = 35/583 (6%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++ L + + + + + G V +D + + + A + GL Sbjct: 6 LARVKGRLDLQQAQKQLDQRNMQFATTLENIGQGVCFFDADQRLILSNRRYAEVYGLPPE 65 Query: 444 SMHG--PIRNWLPY--------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 + + + +D + + ++ + + Sbjct: 66 MIKPGMTLSEITELRYAVGACPVVPHDE---YLAWCDAINSKSSP--QDWSMELKSGKVI 120 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 + S+G ++ DITE + + I A D LT +PNR + +L T Sbjct: 121 RVHHE----RTSDG---GWVSTHEDITEHRNAERQIARLALHDPLTDLPNRAALKQKLDT 173 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 +L+ + V+ +D+D++K++ND+ G VGD VL +R+ +ARL Sbjct: 174 LLEQHQK-QGTQFAVLCLDLDRFKEVNDLFGHHVGDQVLCLAAKRVCATAV-GAFVARLG 231 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F ++ +E ++ A A + ++ + I + S+G A + + ++E+ Sbjct: 232 GDEFMVL--AEADASYAAQLADLIITILSEDAEIEGTRIRMGTSLGVAIFPADGDNAAEL 289 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731 + NA+ A+Y AK G F + +R ++ DL A+ +L +VY P + Sbjct: 290 MGNADAALYRAKADGRGTARFFEPQMDKWLRERRALQRDLQAAISQQQLSIVYQPQADI- 348 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 +++G EAL++W+HP GNI S F+ IAEE ++ I ++L R+ +W Sbjct: 349 GGDVIGFEALLRWNHPTRGNIPPSVFIPIAEESSLMIEIGEWVLREACREAAAWPR---- 404 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +N++ +L +++++ +T P R++L +E V++ + ER+ LG L Sbjct: 405 -KLSVAVNLSPVQFKHGDLDRLVKSVLIETGLEPERLELEITEGVLIDDLERAISTLGHL 463 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIE 910 + +G+ + +DDFGT S LSYL PFD +K + S + + AI+R++I + + ++ Sbjct: 464 KALGVRIAMDDFGTGYSSLSYLQSFPFDKIKIDQSFVRNIGLSQSSAIIRAVIGLGRGLD 523 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 IIA+ + + LTR CD +Q V P + K + Sbjct: 524 LPIIAEGVESTDQLAFLTRESCDQVQGYLVGRPRPISDYAKYV 566 >gi|52840532|ref|YP_094331.1| sensory box protein, GGDEF family protein, LssE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627643|gb|AAU26384.1| sensory box protein, GGDEF family protein, LssE [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 740 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 143/568 (25%), Positives = 267/568 (47%), Gaps = 22/568 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453 ++ + + S D + D+ V + + M + L Sbjct: 180 TESLQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIMKKTSESQLIQY 239 Query: 454 ---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 ++ + ++ Y FR + + + +P + Sbjct: 240 MSTQLLNSEQHAQHVKEFSIHIDDSSIQI-YHFR----NGKV--VECCSKPHR-VGPQTV 291 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + DITEQ + E + A D LT +PNR +DR+ + A ++ ++ Sbjct: 292 GRVWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISSYARH-KMKFAILF 350 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 D+D++K IND L GD +L ++ +R+ L++ D LARL G+ F ++ S N+ +I Sbjct: 351 FDLDRFKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQI 410 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A A + KS P ++ ER+I + SIG + + + T + +L NA++AMY AK RGGN Sbjct: 411 AGVAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGN 470 Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + + + ++ DL A+ + E +L+Y P + EI +EALI+W+HP+ Sbjct: 471 QFSFYTEKLNKKTNQQFQLELDLQKAIIHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQ 530 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G I +F+ AE +I I ++L + I +WR +P I + N+ASK L Sbjct: 531 KGIILPLDFIPTAESSGLIVPIGEWVLRETCKQIGTWR-TMGLPEIRVACNVASKQLRQR 589 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + ++ L+ + P ++L +E+V++ + + + +L+ +G+ + LDDFGT S Sbjct: 590 DFPAMVEDLLKEYSVKPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNS 647 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+ L + D++K + S + + AI+ +II +A+++ IIA+ + + +K Sbjct: 648 SLNLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKF 707 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954 L + C+ IQ ++ P+ I KLL+ Sbjct: 708 LKKRRCNDIQGFLMSKPIPSEEIEKLLQ 735 >gi|95930082|ref|ZP_01312821.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95133776|gb|EAT15436.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 954 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 149/581 (25%), Positives = 263/581 (45%), Gaps = 20/581 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LA 441 F +I + A Q I + E + D V D R + L Sbjct: 373 FLIIHDITAQKNARQQIQKEHEFFQTVIDNMVDPVLVLDTSRHIKKANRAALALADGKLD 432 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + D + + + + + E D++ I+ P Sbjct: 433 DPEEVCCYEAFQRGSLPCDCRSKSCPMHTVLKTGKPASIIE----HIDSKNKIYEIQAAP 488 Query: 502 MSNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + +G++L I DIT++ + I DNLTG+PNR LDR+ Sbjct: 489 YFDESGNMLGVIESFRDITKRLEVENSLIEQERKIYDLTHYDNLTGLPNRSVLLDRVNQA 548 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + + N ++ + +D++KKIN+ LG VGD +L + +R+ L+ +A+ SG Sbjct: 549 IYHALI-KNTHLALISLTLDRFKKINETLGHHVGDCLLQEVAQRLNTLVPQGQTVAKDSG 607 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F I+L + D A + K I + E+ + S+G A + S+E+L Sbjct: 608 SQFFILLEEVPQQEDVVDLADVVLKGIKQSFHANGHELIPSCSLGIAFYPEQAENSTELL 667 Query: 675 KNAELAMYHAKHR---GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 A++AM +K G V + + ++ DL A+EN +L++ Y P L Sbjct: 668 ARADVAMRTSKDDMGGGAVTVYDPKYGEIAPQSLRMEADLKHAIENDKLHIHYQPQFNLE 727 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 ++ +VG EAL++W+HP G +S EF+ +AEE +I ++ ++L ++ + I SW Sbjct: 728 NDVLVGFEALVRWNHPAEGPVSPGEFIPLAEETGLIHSLGRWVLRQVCQQIHSWEQAGIS 787 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +N++S + N ++ +++ + I+L +ES VM E+S LL + Sbjct: 788 V-VPVAVNVSSLQMKKNNFVHILEECLNEFQITAQLIELEITESAVMDRLEKSMELLSAI 846 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 R +G+ L +DDFGT S LSYL PF +K + S + E AI+ +II MAK++ Sbjct: 847 RGLGVKLAIDDFGTGYSSLSYLKSFPFSKLKIDRSFVMDLENDENDAAIITAIISMAKSL 906 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 IA+ + E+ + L + GCD +Q ++ PL +I Sbjct: 907 GLKTIAEGVETELQKQFLIKHGCDEVQGFLMSRPLPVEAIE 947 Score = 47.3 bits (111), Expect = 0.015, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 60/173 (34%), Gaps = 11/173 (6%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 D I+ V+ F +++ + + + ++ I+ Sbjct: 228 QGDYDQAILTYRENAQNEFDVLANAFYEMKNAVKGR--EERLRQKRQQIYSMFHVHQSIM 285 Query: 419 WDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 + D+ + G+++ ++ +H DR +L + R+ Sbjct: 286 FLVDVENYHVLDANVAAERFYGMSAQALKAKC---FYGLHGLDRQELAELLTVCLNGRQE 342 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 ++ ++ + + +R+ P+ + + ++ I +DIT QK + + I Sbjct: 343 FIELPYQDV---GELRCLEVRLSPV-DVDQKACLFL-IIHDITAQKNARQQIQ 390 >gi|120603292|ref|YP_967692.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris DP4] gi|120563521|gb|ABM29265.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Desulfovibrio vulgaris DP4] Length = 951 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 143/585 (24%), Positives = 257/585 (43%), Gaps = 10/585 (1%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + IG + + + + + + L + D + + + A + Sbjct: 356 EIAAIGHAINRLIRDREQAAHTLQENEAFFRLLYEQAPDAMLLL-LDESIASANDAAARL 414 Query: 438 LGLAS--GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHW 494 LG+A + P+ + P + G ++E+ + Sbjct: 415 LGVADRKDLLSHPLIEFFPPAQEGGIPSVEGFARQVENTTPLGNRRFEWIFMRSGGSEVP 474 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + P+ +L A DI+E+K++ I AF D+LTG+ NR FLDRL Sbjct: 475 CEVTLSPVMQRGRRMLHL--TARDISERKRNEAQITHLAFHDSLTGLANRVLFLDRLAHA 532 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + + V+ ID+D++K IND LG A GD +L + I ++ D +AR+SG Sbjct: 533 IATCRRAPDRNFAVLFIDLDRFKVINDSLGHAAGDGLLSIIASAIAANIRETDTVARISG 592 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F +++ + A + + I P+ + E+ ++AS+G S ++L Sbjct: 593 DEFTVLVHEPPSPRFAIKMARRILERIKQPLTIEGFELVISASMGIVIGNSGYTDPHQVL 652 Query: 675 KNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732 ++A++AMY AK G + + F R+ + ++ DL A++N +L Y PI+ L Sbjct: 653 RDADIAMYKAKRAGKDKLRVFGSRMHEQALHAMRLENDLRQAIDNGDLSCHYQPIVNLES 712 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + G EAL +W HP GNI S F+ IAE+ I + ML + S R Sbjct: 713 GALEGFEALARWQHPTLGNIPPSTFIPIAEDTGRIIPLGRAMLHKACAFAASIRGTLPQG 772 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I +N++ + L +L ++A + T P + L +ES++M NP ++ ++ L+ Sbjct: 773 DPVIHVNLSPRQFLSRQLLREVEAALDATGLPPELLVLEITESLLMENPRVAKSIMAGLK 832 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIE 910 +IG+ L+LDDFGT S L L P D+VK + S + + I+R+I+ + ++ Sbjct: 833 EIGVRLSLDDFGTGYSSLGSLQDYPLDSVKIDRSFIRAMNDGRDAEHIVRAILKLVSHLR 892 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I + + + L G +Q A P+ LL+ Sbjct: 893 LEAICEGVETTMQAANLMAFGATRMQGFLFAKPMPSEKARSLLER 937 >gi|229193601|ref|ZP_04320545.1| Sensory box protein [Bacillus cereus ATCC 10876] gi|228589906|gb|EEK47781.1| Sensory box protein [Bacillus cereus ATCC 10876] Length = 835 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 170/794 (21%), Positives = 336/794 (42%), Gaps = 35/794 (4%) Query: 191 YRGIIIGVASLLAIFLTI-FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV--NLPS 247 + I + + I Y + + ++ Y ++ F Sbjct: 46 FFIIQYVLLFVGFAIKFIKIYSIKGLAQFSFDSIFIVIMNIYFTLTFILDLSSFRMLTKE 105 Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + A + T + LF ++F Sbjct: 106 TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSP 165 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351 I ASI+L I+Y K ++ ++P + +I + Sbjct: 166 EFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDYVRFILPYFSIIITFSFIIIQ 225 Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 L + + + Q + +++ Q + + +R Sbjct: 226 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLTTQLEDEVEEGAFALSKSEQR 285 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + + +I D + + Sbjct: 286 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 343 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++++ I + P N +++ GIA DIT + Sbjct: 344 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 400 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L IL+ + T+ N V+ +D+D++KKIND LG Sbjct: 401 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 459 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ DI+AR G+ F I+L + A + + P Sbjct: 460 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 519 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + E+++T SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 520 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 579 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 580 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 639 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 640 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 698 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 699 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 758 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E + + L + CD+IQ ++ Sbjct: 759 REFICGITTSPLEEAIVSSIITLSKELNLKVIAEGVETEEEWEFLHKQNCDHIQGFFISK 818 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 819 PVSSKDVWMLLHKK 832 >gi|21221267|ref|NP_627046.1| hypothetical protein SCO2817 [Streptomyces coelicolor A3(2)] gi|289771443|ref|ZP_06530821.1| sensory box/GGDEF family protein [Streptomyces lividans TK24] gi|14799963|emb|CAC44280.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289701642|gb|EFD69071.1| sensory box/GGDEF family protein [Streptomyces lividans TK24] Length = 634 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 136/595 (22%), Positives = 263/595 (44%), Gaps = 37/595 (6%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 G + + ++ + + D V+ + T+LG ++ G + L Sbjct: 24 GLAPRAVRTEPPAYRSVFTTAPLAMAVVDAEGLVVSANDTLGTLLGTDPDALAGSVAADL 83 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--- 510 + + + R RL+ R++ AD W + + P++ G Sbjct: 84 VDLASD--AGTWHAYREVLRGHRPRLRCTRRLKRADGHSLWAQVTVEPLAGPGGSGGSGD 141 Query: 511 ----RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNL 564 + D++ +++ + D +T +PNR F +RLT L+ Sbjct: 142 GDAPGLLLSVADVSARRELQARLRHLQMHDPVTRLPNRALFFERLTAALEAESYEHGGTG 201 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRF 617 R V +D+D +K +ND G VGD +L ++ R+ + ++ARL G+ F Sbjct: 202 RIGVCYLDLDGFKAVNDTHGHRVGDRLLAAVAERLTRCAEEAAHARSGAPLVARLGGDEF 261 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 +++ + ++AD A A+ ++ P L +R ++VTAS+G ++ T + +++ A Sbjct: 262 ALLVEDSTGTDQLADLAGAVLAALQPPFELSDRRLSVTASVGVVERHTAGTTPTALMQAA 321 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + +Y AK G F + + L A+E E L Y P++ + D + Sbjct: 322 DTTLYWAKADGRARWTLFDPERNANRMTRQALAATLRPAIERGEFALEYQPLVGMEDGRV 381 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPI 794 G+EALI+W+HP++G ++ + F+ +AEE I + ++L W+ PPI Sbjct: 382 RGVEALIRWNHPQFGVLAPNRFIALAEEDGSIVPLGRWILRTACHQARRWQLAHPDEPPI 441 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 F+ +N+A + + D++L + + +T +P ++L +ES VMG+ R +L L + Sbjct: 442 FVSVNVAVRQVWDSDLVADVARTLEETGLAPELLQLELTESAVMGSAGRPLQVLKALSDM 501 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG----------------STEKRIAI 898 G+ + +DDFGT S L+YL +P +K +G+ + G + I Sbjct: 502 GVHIAIDDFGTGYSNLAYLSRLPVSVLKLDGAFVRGFQYDAVSDAAACGAGGANPADEVI 561 Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + +++ +A + T+ A+ + L R+GCD Q + P+ + I LL Sbjct: 562 VEAMVQLAHRLGLTVTAECVETSAQATRLRRIGCDTGQGWLYSRPVAPDRISALL 616 >gi|46580837|ref|YP_011645.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough] gi|46450257|gb|AAS96905.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234538|gb|ADP87392.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris RCH1] Length = 1413 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 122/438 (27%), Positives = 223/438 (50%), Gaps = 7/438 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ E + A D+LTG+PNR L+R+ S VM+ID+D++K IN Sbjct: 957 ERKQNEEQLTYLALHDSLTGLPNRTLLLERIEQARLRSLRGKGRSFAVMMIDLDRFKIIN 1016 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G AVGD +L ++ + +L+ D +ARL G+ F I+L ++ A + K+ Sbjct: 1017 DSHGHAVGDRLLQMVSAAVRPVLRPADTVARLGGDEFAILLEDVATPREVVHVARRVIKA 1076 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698 + P + + + +AS+G T ++ E+L++A++AMY AK +G F + Sbjct: 1077 VERPARVANKLLRTSASVGIVLRTDGYGSADELLRDADIAMYQAKEQGRGRFRVFNRTMH 1136 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 D + ++ DL A+ + L Y P+ ++G EAL++W HP G I + F+ Sbjct: 1137 QQAMDAMNLENDLGAALRWGQFELDYQPVFDTRSRALLGFEALVRWRHPLRGLIPPTAFI 1196 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817 +AEE +I + ++LE + WR Q +++ +N+++ L ++ Sbjct: 1197 PVAEETGIITRLGHWVLETALTALARWRLQIPGIDDLYVAVNMSALQFAQPTLPGSVRDA 1256 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + KT S +K+ +E+ +M +P + + LR +G+ + +DDFGT S L+YL P Sbjct: 1257 LQKTGLPASCLKVEITETAIMQDPTTALQRISALRDLGVGIGIDDFGTGYSSLAYLQRFP 1316 Query: 878 FDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 DT+K + S ++ ST E I+R+++ +A ++ ++A+ + E L +GCD Sbjct: 1317 VDTLKVDRSFVSQSTTPEGEGNREIVRAVVVLAHSLSLAVVAEGVETEEQFAFLAGLGCD 1376 Query: 934 YIQDSHVASPLGFNSILK 951 +Q ++ P+ I Sbjct: 1377 AVQGYLLSRPVPEADIPA 1394 Score = 120 bits (300), Expect = 2e-24, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 1/142 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 VI+ V + + ER +A+ + + +W+WD+ + +P ILG Sbjct: 659 IQVIRDVTERRIELEALAKSRERYQMAIEATNEGIWEWDVTTGELYHSPRCVEILGRGGA 718 Query: 444 SMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 S + L +H +DR T+ S + R E R+R + W++ Sbjct: 719 SAPDTLLRDLSLQVHPDDRLRMVTLTQSLMTEPVERFSLECRMRHPVQGWRWVLCHGVVQ 778 Query: 503 SNSNGDILRYIGIANDITEQKK 524 N +G R G DITE+K+ Sbjct: 779 RNGSGGPRRITGSIADITERKQ 800 Score = 53.0 bits (126), Expect = 3e-04, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 1/135 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + + R + + ++ V ++A + G +S I Sbjct: 403 RQRVEAIHHRYMSILDNAPVGIFRIMPDGSMVGANREMARLWGFSSPEELLASEEARRLI 462 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + G + E R D + ++ R + + G Sbjct: 463 LCDDPKACPLSFAR-IAASGGLVNEEVLCRTRDGRSFTGLVSARAVPQDDDVQSYVDGFL 521 Query: 517 NDITEQKKSLEGILC 531 DI++ K++ + + Sbjct: 522 LDISQLKEARDKLRQ 536 Score = 49.2 bits (116), Expect = 0.004, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 16/155 (10%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + + + + D D V + + G+A+ M Sbjct: 521 LLDISQLKEARDKLRQTSRNLADIIDFYPDATLVVDAAGRLVAWNRAMEELTGIAAADMI 580 Query: 447 GPIRN------WLPYIHI-----NDRDNFRTILDSFVGYRRGRLQYEFRV---RAADNQF 492 G + I I D S + R+ E + R F Sbjct: 581 GKGDYEYALPFYGERIPILCDLLRDPAIIPAARYSLLEQTEHRIVVELPLPFFRKGRGLF 640 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 W +++ +G + I + D+TE++ LE Sbjct: 641 VW--TAASALTDEHGKVTAVIQVIRDVTERRIELE 673 >gi|163850760|ref|YP_001638803.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163662365|gb|ABY29732.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 811 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 137/681 (20%), Positives = 273/681 (40%), Gaps = 17/681 (2%) Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339 + I+ + + + +AS L + Y + L Sbjct: 125 GRGYRISAGFALALGLAWATMPVVLFCSASSDERLLVVSIAAGLISDAYVVGPLLSVSYL 184 Query: 340 L-IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL-VLIVILIGFTVIQHVLATGYFS 397 IP + FI I + ++ A G+ V + + I + S Sbjct: 185 FAIPVIVGSFIGLARSGEPIALSIAVLLLVYATFVGVSVHRMSRLSRQRILDRVRVEDQS 244 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + I + D +W+ + +P +A LG + L Sbjct: 245 ETIGLLLNEFE---ENTSDWLWETNETGRFQHVSPRMADALGCPIERLQRSSFRDLLRAG 301 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + ++ T L + + + + W+ + +P ++ G + + G+ + Sbjct: 302 EDRDEDRTTDLLGHLRQGKAFHECLVAIETPTG-LRWLALSGKPFADQRGTLAGFRGVGS 360 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+T+++++ I A +D LTG+ NR F D ++ R ++ +D+D +K Sbjct: 361 DVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEAC-TASMSGGPRVHLLYLDLDGFK 419 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 K+ND G GDD+L + R+ + + RL G+ F I+ ++ A A+ Sbjct: 420 KVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAE-AEILAEAV 478 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 S+ P + + + SIG A ++++ A+LA+Y AK G F Sbjct: 479 IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCFEA 538 Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + + N E+ L Y P++ L D E+VG EAL++W P G +S + Sbjct: 539 DLERRVQRWRELDSAMRAGLTNGEMELHYQPLVSLQDGEVVGCEALLRWTRPGLGPVSPA 598 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 E + IAE + I + L + ++W P+ + +NI+S + + ++ Sbjct: 599 ELIPIAESTGFVITIGRWALRTACAEALTWP-----VPMRVAVNISSTHFRLPDFFQEVE 653 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 A++ T +P R+++ +ES+ + N L LR G+ + LDDFGT S LSYL Sbjct: 654 AVLDATGLAPERLEIEITESIFLANTPHVLENLQALRAKGVRIALDDFGTGYSSLSYLTQ 713 Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + + + + + +A++++I+ +A ++ + + + E + L C+ Sbjct: 714 YPVDKIKIDRAFVRDLSSRPECLAVIKAIMVIAGDLRIDVTVEGVETEQQAELLRLRRCN 773 Query: 934 YIQDSHVASPLGFNSILKLLK 954 Q + + L++ Sbjct: 774 SAQGFLYSPARPSGEVTGLIE 794 >gi|103487670|ref|YP_617231.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] gi|98977747|gb|ABF53898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingopyxis alaskensis RB2256] Length = 729 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 146/578 (25%), Positives = 270/578 (46%), Gaps = 18/578 (3%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAV-----LGSGDIVWDWDIVRDRVTTTPDIATI 437 GF AT + R++L + W D T +A Sbjct: 23 GFFGRIGSRATRRRGDAAANLQTREALLLLQNYEESGRGWFWSTDADGRLTYITDVVART 82 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 +G ++ ++ G L ++ + + L + + R A + W I Sbjct: 83 MGRSAAALLGTPLTDL-FLPADSHGERQRTLRFLLTRQSAFDDLPLRG-AFEGGDRWWAI 140 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 RP +++G Y G DIT Q++S E A D+LTG+ NR + +L L Sbjct: 141 SGRPQYDADGQFTGYRGSGTDITAQRRSAEDASRLALYDSLTGLANRFNISKKLDATLAA 200 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 A +M++D+D++K++ND LG GD +L + R+ + + ++++RL G+ F Sbjct: 201 FAQQQR-SCAIMLLDLDRFKQVNDTLGHPAGDALLKQVAERLLKFVGDKEMVSRLGGDEF 259 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 IIL ++ K+ D A + S++ P ++ + AS+G A +S ++++NA Sbjct: 260 QIILPDIDDRGKLGDMAADIIASLSQPYSVEGSRCIIGASVGVAIAPFDGQSSDDLVRNA 319 Query: 678 ELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LA+Y AK G S + DR ++EDL A+ E+ L Y P++ + Sbjct: 320 DLALYAAKGNGCGRFAFYSSDLHQAAEDRRALEEDLRDALARGEIALAYQPVVNARSNMV 379 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 G+EALI+W H G IS + F+ IAEE +I + ++L + D W + + Sbjct: 380 TGVEALIRWTHRDRGAISPALFIPIAEEANLIWPLGEWVLRKACEDAAGWPGE-----MR 434 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N++ + EL + + ++ + SP R++L +ESV +G+ + + L+ +G Sbjct: 435 VAVNVSPIQFANPELPKVVAKALAASGLSPDRLELEITESVFLGDTAEANRMFKALKGLG 494 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETT 912 + L LDDFGT S L+YL PFD +K + S + G+TE + AI+ +I+ +A+ ++ Sbjct: 495 VRLALDDFGTGYSSLAYLQSAPFDKIKIDQSFVRGATEPGSRNSAIIAAIVALAEALDME 554 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 A+ I + + ++ ++Q + P+ ++ Sbjct: 555 TTAEGIESLDQLDLVRKLNVSHVQGYVYSRPVPCADLV 592 >gi|325982380|ref|YP_004294782.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] gi|325531899|gb|ADZ26620.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosomonas sp. AL212] Length = 813 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 136/579 (23%), Positives = 268/579 (46%), Gaps = 15/579 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 ++Q + + S + + + + ++ Sbjct: 238 VGILQETTENRLAKDRLAQA----ATVFECSTEGIIILNKNKLVDCANNAFYSMTQYQER 293 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 ++ +L H + N L V G + E + + + ++ + I + Sbjct: 294 NLKNKELPFLT--HRSLNGNIYEDLWHSVET-HGCWRGEIKAFKRNKEIMYIWLTIGLIP 350 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G +++ + +DIT+ +++ E + A+ D+LT +PNR +DRL + +A D + Sbjct: 351 VETGMEKQFVVMISDITKIRETQEQLAHFAYYDSLTNLPNRILIMDRLNQAIAKAARDSS 410 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 L ++ ID+D +K+IND LG GD +L +++RI +L+ D L RLSG+ + + + Sbjct: 411 L-LGILFIDLDNFKRINDTLGHKHGDSMLCLISQRILSVLRQSDTLGRLSGDEYIAVAGN 469 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + I+ P+ L EI + SIG + + +++ A+ AMY Sbjct: 470 VESYDALIRIAGKILDCISKPVVLSNMEIIPSCSIGISVYPHHSENPDHLVQMADTAMYE 529 Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + + + + + +L A+ N E L + P L+++EI+G+EAL Sbjct: 530 AKKNGRNNYAFYHPGLTQRAAHHLTRERELHHALINDEFLLYFQPQFSLINKEIIGVEAL 589 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HPK G + +E + +AE +I I ++L+ + + WR + + +N++ Sbjct: 590 IRWKHPKRGLLLPAEIIPVAETSRLIIDIGNWVLKEACKQLHQWRTDGLD-NLRMSVNVS 648 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L DN L + + L+ + ++L +ES + N L +L+K+GI +++D Sbjct: 649 IRQLADNNLQKFIAKLLHQYSLPAHSLELEITESCL-QNELIYISCLEQLKKLGILISID 707 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LS L +P +K + S + G + AI +++ +A+ + + A+ I Sbjct: 708 DFGTGYSCLSSLKNLPIHRLKIDQSFVKGIPLDKNDCAIATAVLALAQKLNLQVTAEGIE 767 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I L GC+ +Q ++ P+ I L+++ FP Sbjct: 768 TYDQITFLLGHGCNELQGYWLSKPVSPKHIPDLIRD-FP 805 Score = 58.0 bits (139), Expect = 9e-06, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 9/137 (6%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIH 457 + + LA+ + W+ +V G + ++ I Sbjct: 130 LKKSEQHLRLALEAARMGTWEVTKASQKVFMGKS-------PRGDLEPITDWESFFLTID 182 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +D+ +D + + EFRV + + W + + N + + +GI Sbjct: 183 NSDKSKVCDFIDKLCAKKGYAAEIEFRVTTSAGKICWYKLYGKSFENGSSAQYQVVGILQ 242 Query: 518 DITEQKKSLEGILCNAF 534 + TE + + + + A Sbjct: 243 ETTENRLAKDRLAQAAT 259 >gi|256822113|ref|YP_003146076.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256795652|gb|ACV26308.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kangiella koreensis DSM 16069] Length = 1012 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 122/584 (20%), Positives = 250/584 (42%), Gaps = 16/584 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 LI I + + + + E V + D + +D + + +LG Sbjct: 419 LIEVGTISDITHRKVMERELINKEEYYRALVENAFDGIVLYDEKGRVQFLSKSVEKLLGY 478 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRI 499 + + + + +I +D + R + + + ++R+ D W+ + Sbjct: 479 KAEDV--TNKTGIDFIFPSDLELVRKAWHWAMAHPNQIYRIPDYRLVKKDGGLIWVENTL 536 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + + + I DI+ +K + + I + D LT +PNR ++ + Sbjct: 537 INLLD-DPVVSGIISNFRDISHKKSAEQSIYKISNYDALTELPNRHFLRQQIERQIKRYQ 595 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + +++ DI + IN+ +G VGD VL + R I E L D++AR + F + Sbjct: 596 KEPQ-SISLVYFDIVQLNGINNAMGHWVGDQVLHYVARVIRENLDEFDLIARSGNDEFAV 654 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L E +++ + S I + E ++ V+ G A + ++ ++L AE+ Sbjct: 655 VLT-EQEPFEVSQLVERILSSFENIIRIGELDLKVSIRAGIARFPEDADSAEDLLSRAEI 713 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 A+ K+ + S ++ +L A+++ L L Y P + L I + Sbjct: 714 AVGRVKNLSTQYTFFQPQDSESISYRINLERELVQAIDDQSLELFYQPKVCLRTGVIESV 773 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP+ G IS + IAE +I + ++++ + I W ++ I + Sbjct: 774 EALLRWNHPESGYISPQTIVNIAEANSLIYKLTSWVVDNAIKQIKDWSEKGLNT--RIAV 831 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++++D+ ++ + K + + + +ES M + E S L +L +GI + Sbjct: 832 NLSARDIQRAGFEADIRQSLEKYQVDSTLLDIEITESAAMADMEHSVQTLRQLSDLGIGI 891 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-------KRIAILRSIIPMAKNIET 911 +LDDFGT S +SYL +P D VK + + + G + I+++II +A++ + Sbjct: 892 SLDDFGTGYSSISYLASLPVDLVKIDQTFIQGLKQASEQAVKDNQLIIKNIIRLAESFKL 951 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + I + L + CD Q + P I LL++ Sbjct: 952 VSLVEGIETVEQCRLLQKYNCDLGQGFLFSRPKSAKDIEPLLRK 995 Score = 67.7 bits (164), Expect = 9e-09, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 4/148 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT-PDIATILGLAS 442 V + V + + + S D+++ +D + + A LG Sbjct: 291 IAVARDVSKRQKVMDELDTSKRFMQDIINTSPDVIYVFDFEKGLIIDGADRFARYLGYGG 350 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRP 501 + L IH +D D + + ++ E R + A ++ W+ + Sbjct: 351 DEFE-SWDSVLKIIHPDDSDILKERGAKIMNSNSDEVIKSEGRFKNAKGEWVWLKNHCKI 409 Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEG 528 + S G+ L +G +DIT +K Sbjct: 410 VKRTSQGEPLIEVGTISDITHRKVMERE 437 >gi|320332728|ref|YP_004169439.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Deinococcus maricopensis DSM 21211] gi|319754017|gb|ADV65774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Deinococcus maricopensis DSM 21211] Length = 756 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 133/660 (20%), Positives = 266/660 (40%), Gaps = 50/660 (7%) Query: 333 GYERAVLLIPAWILIFIWFIGLWMAIT-KRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 G A +L + + R +D+ L+ L + + + + Sbjct: 105 GDPHIRFYAGAPLLTPDGLAIGSLCVLDTRARHDVSAEQLLTLQDLAAMTMEALETRLTV 164 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR------DRVTTTPDIATILGLASGSM 445 ++ E A+ + D V G A+ + Sbjct: 165 EARAAAESQLHLME---AALANATDAVLILSADATSGSGLRVAYVNAAFERQSGYAATDV 221 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G L H R L + + + +W + P+ ++ Sbjct: 222 EGRDPAVLWRAHRETTARLRGALSRAAAD-----VLDMQFDHRNGNVYWAETSVSPLRDA 276 Query: 506 NGDILRYIGIANDITEQKKSLE-------------------------GILCNAFQDNLTG 540 G + + + D T++++ E +A D LTG Sbjct: 277 GGQVSHLLLLKRDNTDRRREEEHLRTTGMELAQRVLERTREVQHLTVQREHDALHDTLTG 336 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PN F RL IL + + V+ +D D++K +N+ LG +VGD +LV+ RR+ Sbjct: 337 LPNWTLFNLRLQAILRSA----DPTFAVLYLDCDRFKVVNETLGHSVGDALLVAFARRLE 392 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 L++ D +ARL G+ F ++L S + + A ++ P + + ASIG Sbjct: 393 ALVRPTDTIARLGGDEFVVLLESLDEPDIASLVAERFARAFTAPFQVGPHTLYFGASIGV 452 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS 718 + + +++++A++AMY AK G +F + ++ +L A+ Sbjct: 453 VVGGAHYQHADDVMRDADIAMYSAKRAGRGAFVTFHEQMRPNTNTQLLLEAELRAALAAD 512 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 +L + + PI+ + + G EAL++W G +S +EF+ IAEE +I ++ ++L Sbjct: 513 QLTVHFQPIVHIPTSRVHGFEALVRWPR-GGGMMSPAEFLPIAEETGLIVDVDRWVLREA 571 Query: 779 ARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R + +WR + + +N++S+ +L + ++ + + + +K+ +E +V Sbjct: 572 CRHMAAWRTTLPNTDQLTLSVNLSSQQFTRPDLVDAVRTALHASGFPAELLKVEITEGLV 631 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KR 895 M + + L+ +G+ L +DDFGT S L YL +K + S M G + Sbjct: 632 MERSDVVTTNIAGLKALGVGLHIDDFGTGYSSLGYLQRFDAQALKIDRSFMGGVEDRADS 691 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++R+I MA N+ +++A+ + + L +GC+Y Q ++ P+ + LL+ Sbjct: 692 AELVRTITAMAHNLGLSVVAEGVETRAQLALLRSLGCEYAQGFLLSRPIPVQDVPALLER 751 >gi|120601850|ref|YP_966250.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris DP4] gi|120562079|gb|ABM27823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio vulgaris DP4] Length = 1413 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 122/438 (27%), Positives = 223/438 (50%), Gaps = 7/438 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ E + A D+LTG+PNR L+R+ S VM+ID+D++K IN Sbjct: 957 ERKQNEEQLTYLALHDSLTGLPNRTLLLERIEQARLRSLRGKGRSFAVMMIDLDRFKIIN 1016 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G AVGD +L ++ + +L+ D +ARL G+ F I+L ++ A + K+ Sbjct: 1017 DSHGHAVGDRLLQMVSAAVRPVLRPADTVARLGGDEFAILLEDVATPREVVHVARRVIKA 1076 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698 + P + + + +AS+G T ++ E+L++A++AMY AK +G F + Sbjct: 1077 VERPARVANKLLRTSASVGIVLRTDGYGSADELLRDADIAMYQAKEQGRGRFRVFNRTMH 1136 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 D + ++ DL A+ + L Y P+ ++G EAL++W HP G I + F+ Sbjct: 1137 QQAMDAMNLENDLGAALRWGQFELDYQPVFDTRSRALLGFEALVRWRHPLRGLIPPTAFI 1196 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817 +AEE +I + ++LE + WR Q +++ +N+++ L ++ Sbjct: 1197 PVAEETGIITRLGHWVLETALTALARWRLQIPGIDDLYVAVNMSALQFAQPTLPGSVRDA 1256 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + KT S +K+ +E+ +M +P + + LR +G+ + +DDFGT S L+YL P Sbjct: 1257 LQKTGLPASCLKVEITETAIMQDPTTALQRISALRDLGVGIGIDDFGTGYSSLAYLQRFP 1316 Query: 878 FDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 DT+K + S ++ ST E I+R+++ +A ++ ++A+ + E L +GCD Sbjct: 1317 VDTLKVDRSFVSQSTTPEGEGNREIVRAVVVLAHSLSLAVVAEGVETEEQFAFLAGLGCD 1376 Query: 934 YIQDSHVASPLGFNSILK 951 +Q ++ P+ I Sbjct: 1377 AVQGYLLSRPVPEADIPA 1394 Score = 120 bits (300), Expect = 2e-24, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 1/142 (0%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 VI+ V + + ER +A+ + + +W+WD+ + +P ILG Sbjct: 659 IQVIRDVTERRIELEALAKSRERYQMAIEATNEGIWEWDVTTGELYHSPRCVEILGRGGA 718 Query: 444 SMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 S + L +H +DR T+ S + R E R+R + W++ Sbjct: 719 SAPDTLLRDLSLQVHPDDRLRMVTLTQSLMTEPVERFSLECRMRHPVQGWRWVLCHGVVQ 778 Query: 503 SNSNGDILRYIGIANDITEQKK 524 N +G R G DITE+K+ Sbjct: 779 RNGSGGPRRITGSIADITERKQ 800 Score = 53.0 bits (126), Expect = 3e-04, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 1/135 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + + R + + ++ V ++A + G +S I Sbjct: 403 RQRVEAIHHRYMSILDNAPVGIFRIMPDGSMVGANREMARLWGFSSPEELLASEEARRLI 462 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +D + G + E R D + ++ R + + G Sbjct: 463 LCDDPKACPLSFAR-IAASGGLVNEEVLCRTRDGRSFTGLVSARAVPQDDDVQSYVDGFL 521 Query: 517 NDITEQKKSLEGILC 531 DI++ K++ + + Sbjct: 522 LDISQLKEARDKLRQ 536 Score = 47.6 bits (112), Expect = 0.010, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 20/157 (12%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 + + + + + D D V + + G+A+ M Sbjct: 521 LLDISQLKEARDKLRQTSRNLADIIDFYPDATLVVDAAGRLVAWNRAMEELTGIAAADMI 580 Query: 447 GPIRNWLPYIHINDRDNFR-------------TILDSFVGYRRGRLQYEFRV---RAADN 490 G + S + R+ E + R Sbjct: 581 GKGDYEYAL--PFYGERIPILCDLLRNPAIIPAARYSLLEQTEHRIVVELPLPFFRKGRG 638 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 F W +++ +G + I + D+TE++ LE Sbjct: 639 LFVW--TAASALTDEHGKVTAVIQVIRDVTERRIELE 673 >gi|237802331|ref|ZP_04590792.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025188|gb|EGI05244.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 897 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 149/564 (26%), Positives = 266/564 (47%), Gaps = 12/564 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + AV S + + P I +S + G L + Sbjct: 336 RRAATIALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGRK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F ++L + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLL-DDTDQEAGQAIASQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPIHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFGH-LQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 ASILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 D Q P+ +++ LK Sbjct: 868 DVGQGYLFDRPIPGEELVEKLKRY 891 >gi|332529366|ref|ZP_08405327.1| hypothetical protein HGR_05631 [Hylemonella gracilis ATCC 19624] gi|332041164|gb|EGI77529.1| hypothetical protein HGR_05631 [Hylemonella gracilis ATCC 19624] Length = 811 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 150/568 (26%), Positives = 249/568 (43%), Gaps = 18/568 (3%) Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454 E A +GD + D + I G + G ++L Sbjct: 251 ERVQAEEHLRQAAVVFETTGDGILILDREQRVCMGNKAFERITGWRVQEVLGQRPDDFLH 310 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 DR + +Q E R DN + P+ + G + Y+ Sbjct: 311 ASRSGDRRRVVAT------DDQDSIQVEITCRRRDNSLFPAWEGLSPVIDRVGKLTHYVL 364 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-DNLRPTVMVIDI 573 DI+ + + A D LTG+ NR L + +A+ D+ ++ ID+ Sbjct: 365 TFCDISALRSVESRLTHVALHDALTGLGNRHQLDICLRHNIARAASRVDDGGFGLLFIDL 424 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K IND LG +VGD++LV + RR L+ D+ R+ G+ F I+L ++ Sbjct: 425 DGFKNINDSLGHSVGDEMLVEIARRFRTTLRQNDVAVRMGGDEFLILLDQLRSTEDAMAL 484 Query: 634 AIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 + I+ PI + ++ TASIG A + ++ E++K A+ AMY AK G N Sbjct: 485 CRKLLALISEPIRTSVGQTVSTTASIGIALFPEHADSADELVKAADTAMYAAKAAGRNRG 544 Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F + +R+ +++ L A+ EL L + P+I L D I+G EAL++W+H G Sbjct: 545 AVFSQGLARRALERLQLEQGLRQAIVRGELELQWQPVIDLRDGRIIGAEALLRWNHGDSG 604 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 IS F+ +AEE +I I ++LE+ R+ W+ Q P + IN+++ L Sbjct: 605 RISPERFIPLAEETGLILPIGDWVLEQACRNAADWKAQGLEPG-RLAINVSALQLQQEGY 663 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 E + +S+ SP ++L +ES + + E ++ L +LR +G+ L LDDFGT S L Sbjct: 664 AERVGEALSRHGLSPEMLELELTESSL-QHGEAVQMALHKLRALGVYLALDDFGTGFSSL 722 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 S L ++P +K + S + +AI R+I MA + + A+ + EI L Sbjct: 723 SMLKFLPLTRLKIDRSFIRDLATDPNDMAIARTIAVMAMTMGLEVTAEGVETEIQRTILL 782 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956 + +Q L +LL R Sbjct: 783 GLNVREVQGWLYHPALPVGKFTELLVAR 810 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 8/181 (4%) Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412 A L I L I I+ I+ LA + R LA+ Sbjct: 91 LTAYAGDDILQRAIEAAPYGYVLKPIQIVELNATIRAALARVEEERKTRRAERRFRLAME 150 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 V ++D R + + +IL S S +L +I ++ R +DS + Sbjct: 151 AGRFGVMEFDAARRQFELDGFMESILAQPSQSFTVGHDAFLRHIEESE---VRQSIDSLL 207 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 R R D + W+ I + R +GI D++E+ ++ E + Sbjct: 208 LAGRMVQVCTAW-RRDDGERIWLEIHASYFPEED----RVVGILRDVSERVQAEEHLRQA 262 Query: 533 A 533 A Sbjct: 263 A 263 >gi|293602985|ref|ZP_06685423.1| sensory box protein [Achromobacter piechaudii ATCC 43553] gi|292818605|gb|EFF77648.1| sensory box protein [Achromobacter piechaudii ATCC 43553] Length = 694 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 142/588 (24%), Positives = 264/588 (44%), Gaps = 30/588 (5%) Query: 381 LIGFT-VIQHVLATGYFSQGIFSDGER--------------QSLAVLGSGDIVWDWD-IV 424 LIGF V + V Q + E V V D + Sbjct: 111 LIGFAKVTRDVTERREREQQLLRAKELAEHYNSELTSLSSFLDAVVSHIPSCVLVLDAVS 170 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 R+ + G M G + + F + + + + E + Sbjct: 171 RNILLANRQAEATFGATRAQMLGKTAQ--QCLPAPVFEFFDRLTNDALRSDGALREAEEK 228 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 + A + R +++ + I++D+T++ + + A D LTG+PNR Sbjct: 229 LATARG-MRTLRTRSLVFHSNDPRSRYALLISDDVTDENAAHAQVRYMAHHDTLTGMPNR 287 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + F ++L L+ A D V+ +D+D +K +ND LG GD++L RR+ ++L+ Sbjct: 288 RLFREQLLRALNHCADDRRT--AVLCLDLDNFKSVNDTLGHPCGDELLRLFARRLPKVLR 345 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 D LARL G+ F ++L + + A + ++ P + + ++ SIG A Sbjct: 346 EQDTLARLGGDEFAVVLPNIGQQDDVRKMAERIIDAVRQPFEVEGHTVPMSVSIGIALAE 405 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722 + T+ +L+ A++A+Y AK G N + F+ + R ++ DL A+ +L L Sbjct: 406 TPDHTADHLLRYADMALYEAKRNGRNCMAFFKPEMEAAALKRHEVEMDLRQAIMGQQLQL 465 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y PI+ + +VG EAL++W HP G I S+F+ IAEE +I + F L + Sbjct: 466 YYQPILDVSHVRVVGREALMRWQHPVKGLIMPSDFIPIAEETGLIHELGAFTLHEACHEA 525 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 + W D + +N+++ ++ L +++ +S + R++L +ESV++ N Sbjct: 526 MRWDDHE-----TVAVNLSASQFTNSALVSLVESALSTSGLPARRLELEITESVLLANSA 580 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900 + L RL+ +G+ + LDDFGT S L YL FD +K + S S+++ +AI+R Sbjct: 581 TNLNTLNRLKALGVKVALDDFGTGYSSLGYLRSFDFDKIKIDKSFTQDVESSKEALAIIR 640 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 +I + ++++ A+ + + LT+ GC + Q + P+ ++ Sbjct: 641 AINGIGRSLDIPTTAEGVETAAQLDRLTQEGCSHFQGYLLGRPVSHDA 688 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 5/122 (4%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 ++ G + G N+ + D+ + Sbjct: 21 AIYMLHPDGTVANWNAGAQRAKGYTQEEIVGK--NFACFYSAEDQAAGLPQRGLATAREQ 78 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE---GILCNA 533 GR + E D W + I P+ + GD++ + + D+TE+++ + A Sbjct: 79 GRFEAEGWRVRKDGTLFWANVVIDPIRDDAGDLIGFAKVTRDVTERREREQQLLRAKELA 138 Query: 534 FQ 535 Sbjct: 139 EH 140 >gi|229112762|ref|ZP_04242294.1| Sensory box protein [Bacillus cereus Rock1-15] gi|228670596|gb|EEL25908.1| Sensory box protein [Bacillus cereus Rock1-15] Length = 735 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 165/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + A + T + LF ++F Sbjct: 6 TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSA 65 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351 I ASI+L I+Y K ++ ++P + +I + Sbjct: 66 EFNYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125 Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 L + + + Q + ++ Q + + +R Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + + +I D + + Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++++ I + P N +++ GIA DIT + Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L IL+ + T+ N V+ +D+D++KKIND LG Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ DI+AR G+ F I+L + A + + P Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + E+++T SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E + + L + CD+IQ ++ Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKELNLKVIAEGVETEEEWEFLHKQNCDHIQGFFISK 718 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 719 PVSSKDVWMLLHKK 732 >gi|307153627|ref|YP_003889011.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306983855|gb|ADN15736.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 834 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 125/573 (21%), Positives = 254/573 (44%), Gaps = 13/573 (2%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWL 453 + ++ ER + V + ++ +I ++ + +LG + + Sbjct: 270 RLESQLTNNLERYNFLVEQISEGIFLVNIKTKKIIDANLGVCELLGYQYDEIIQLNLYQI 329 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + DR+ T L + E R D + +I N + Sbjct: 330 IAL---DRNIIDTELQKISENYPYLID-ESLYRCQDGTLISVKAKIS--RNQYNGQEIFS 383 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DI+E+K++ E + AF D+LT +PNR+ F +L L + + + V+ +DI Sbjct: 384 FSVQDISERKRTEEKMQYEAFHDSLTNLPNRKLFYQQLYLTLTNAKKNQTI-FGVIFLDI 442 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K IN+ LG +VGD +L S +R+ + D +AR + F I+L N + Sbjct: 443 DSFKNINNSLGHSVGDQLLESFAQRLISCTRTGDTVARWGSDDFTILLPRLKNPEENIKI 502 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + + + P + + ++ V SIG A + +LKNA +A+ K +G N + Sbjct: 503 SQKILDDLKQPFVIGKHQLQVKVSIGIAIYPQDGEDEETLLKNAAVALTKTKEQGKNSYQ 562 Query: 694 SF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + +SS + + ++ + +E E + Y P I+ E+ +EAL++W+ P+ G Sbjct: 563 FYTPIMSSEAALLLKLENAIHKGLERREFSVYYQPQIKWSSGEVTAMEALLRWEVPEIGL 622 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I S+ A + +I I ++L+ ++W++ PP+ I +N+++++ + L Sbjct: 623 IPPSKLFAKASKTDLILQITQWILQTACEQNLAWQEAGL-PPVPIAVNLSAREFQNPYLV 681 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + ++ KT P ++L +E ++ N + + +GI L LDDFG S + Sbjct: 682 ETVARILQKTRLDPHWLELELTEKILRQNLRAAPGIFQDFHNLGIRLALDDFGIGFSSIG 741 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL F T+K + S + T + A++ +++ + + ++A+ + ++ L Sbjct: 742 YLKQFRFRTLKIHQSFIRDLRGTSQEAALISALVTLGRGFNLRVVAEGVETPSQLELLKT 801 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 + C+ +Q ++ PL + L +R + Sbjct: 802 LECEEVQGYLLSRPLRASEATPFLTQRAAQLNR 834 >gi|95930951|ref|ZP_01313680.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] gi|95132960|gb|EAT14630.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfuromonas acetoxidans DSM 684] Length = 956 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 141/583 (24%), Positives = 260/583 (44%), Gaps = 21/583 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F ++ + A Q + + E + + D V D R + Sbjct: 373 FLIVHDITAQQKARQQLRKEYEFFQMVIDNMVDPVLVMDTSRHIKKANRAAMFLADGKID 432 Query: 444 SMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + D + + + + + ++ D + I+ P Sbjct: 433 ETAEVCCYEAFHRGSLPCDYQSQSCPMHTVLKTGKPASV----IKHLDEKNKTYEIQAAP 488 Query: 502 MSNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + G+IL I DIT++ + I D+ TG+PNR +DRL Sbjct: 489 YFDDMGNILGVIESFRDITKRLEVENSLVEHERKIYDLTHYDSATGLPNRSVLIDRLNQA 548 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 + + +++ + + +D++KKIN+ +G VGD +L + +R+ +L LA+ SG Sbjct: 549 IYRALFNNSSLAL-LSLTLDRFKKINETMGHHVGDCLLQEIAQRLKKLTCDHSSLAKDSG 607 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 ++F +++ + + DFA + + +E+ + SIG A + ++E+L Sbjct: 608 SQFFLLIEGDP-KEVVFDFADEVLTEVKQSFFANGQELIPSGSIGIAFYPDHAENATELL 666 Query: 675 KNAELAMYHAKHR---GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 A++AM +K G V + + ++ DL A+EN++L+L Y P L Sbjct: 667 ARADVAMRLSKDDMGGGAVMVYDPKYGEVAPQSLRMEADLKHALENNQLHLHYQPQFDLK 726 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + +VG+EALI+W+HP G +S EF+ +AEE +I + ++L R W++ Sbjct: 727 NAGLVGVEALIRWNHPTEGPVSPGEFIPLAEETGLIHPLGRWVLREACRQAKFWQNNFAR 786 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +N++S L N ++ +++ P I+L +ES VM E+S LL + Sbjct: 787 I-VPVAVNVSSLQLKKNNFVHVLEECLNEFQIDPQLIELEITESAVMDRLEKSMELLNAI 845 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909 + +G +L +DDFGT S LSYL PF +K + S + E AI+ +II MA ++ Sbjct: 846 KGLGFNLAIDDFGTGYSSLSYLKKFPFSKLKIDRSFVMDLETDENDAAIITAIISMATSL 905 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 IA+ + LT GCD +Q ++ PL ++I ++ Sbjct: 906 GLKTIAEGVETVEQKHFLTDHGCDEVQGFLLSRPLSADAIEEM 948 >gi|187927389|ref|YP_001897876.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J] gi|187724279|gb|ACD25444.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Ralstonia pickettii 12J] Length = 1221 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 137/580 (23%), Positives = 264/580 (45%), Gaps = 13/580 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 +I V + I E SL + + + + D +LG ++ Sbjct: 646 TLALISDVTYRSALTHTIREQKEFFSLLMGSTVEAICGLDQNGCCTFANAACERLLGYSA 705 Query: 443 GSMHGPI-RNWLPYIHINDRDNFRTIL---DSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G + + H + +S + E +D + Sbjct: 706 QELAGKPMHALIHHTHEDGSPYELAACQIQNSIASGAHVHVDNEV-FWRSDGTSLPVEYW 764 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 P+ +G + I + +E+++ + + A D+LTG+ NR SF+ L T L + Sbjct: 765 AYPIV-RDGQVAGSIVTFIETSERRRQQDELRRRATFDDLTGLLNRPSFVTALETRLQQA 823 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + P V ++D+D +K+IND LG A GD +L + R+ + L + RL G+ F Sbjct: 824 DASER-HPVVAILDLDGFKEINDSLGHATGDQLLRGVAERLTDQLGPHADVGRLGGDEFA 882 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++ A+ +SI P ++ ++ + S+G A + + + +L++A+ Sbjct: 883 FVVDESYGPPIATRI-EAVMESIRRPFSIAGLDLAINGSVGAARYPGAGLDVDTLLRSAD 941 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +AMY AK G + RV + + +L A++ E L + P I L G Sbjct: 942 VAMYVAKREGHGFTFTDRVDAGTPRPF-LLSELRRALQEDEFILHFQPTIPLQGLPHFGF 1000 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W+HP+ G + EFM + E +I + +++ + + F+ + Sbjct: 1001 EALIRWNHPRLGIVGPGEFMPMVEVSDLIHPLTEWVIASAVSRFKTIIESWPNA--FVAV 1058 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ ++L++ + +Q L+ + + + +K+ +ES VM +P+R+ L L +G+ + Sbjct: 1059 NVSMRNLINQKFTSSVQYLVEQNRFPVNCLKIEVTESAVMADPDRTLRALNELHGLGVRI 1118 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 +DDFGT S L+YL +P D +K + S ++G + AI+ SII +A ++ ++ A+ Sbjct: 1119 AVDDFGTGYSSLAYLQKLPVDDLKIDRSFVSGLSGSQPSKAIVHSIISLAHSLGLSVTAE 1178 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I E D++ L GCD+ Q ++ P+ F+++ LK R Sbjct: 1179 GIESEADMRILRAAGCDFGQGYYIGHPMPFDAVHDWLKSR 1218 >gi|218234510|ref|YP_002370125.1| sensory box/GGDEF family protein [Bacillus cereus B4264] gi|218162467|gb|ACK62459.1| sensory box/GGDEF family protein [Bacillus cereus B4264] Length = 814 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 176/818 (21%), Positives = 335/818 (40%), Gaps = 70/818 (8%) Query: 202 LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261 + I L + + + A+ + ++ YI + GF K + S + L + I + Sbjct: 1 MEITLFLSSLSIHDQSIFSYKALPFFIIQYILLFVGFAIKFIKNYSIKGLSQFSFDSIFI 60 Query: 262 SSSLIIFLFMY---LHWNRWHAKVGYITFSGIACIAILFCMS-------FYYPMVTASIA 311 I F + L R K +I +++ Y A I Sbjct: 61 IIMNIYFTLTFILDLSSFRMLTKDTWILIGYFIAQSLVIYAVISLYRREQYSSSRIALII 120 Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371 T+ + Y F + GMK LI ++ I + + K + ++ Sbjct: 121 GFTIILVYGYIHLFQLNFGMKTSAEINYLIHTASILLIGLSSILYILDKPMQHETKTKYY 180 Query: 372 VGGLVLIVI-------------------------------------------------LI 382 V ++ Sbjct: 181 RFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTY 240 Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 Q + + +R D V+ ++ + ++ + Sbjct: 241 EQLTTQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TA 298 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + + +I D + + L R L E R + + ++++ I + P Sbjct: 299 YYCEVASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPT 356 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 N +++ GIA DIT + + + AF D LTG+PNR+ F L IL+ + T+ Sbjct: 357 F-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNA 415 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 N V+ +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L Sbjct: 416 N-DVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLP 474 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + A + + P + E+++T SIG A + +E++KNA++AMY Sbjct: 475 EMYSEKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMY 534 Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N F +++ ++ +L A++ +E +L Y P + ++I+G EA Sbjct: 535 RAKANGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEA 594 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HPK G +S ++F+ +AEE I + ++L + W +Q + + +N+ Sbjct: 595 LIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNL 653 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + +L + ++ +T P + + +ES+ + + L +L+ +GI +++ Sbjct: 654 SVVQFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISI 713 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL P +T+K + G + AI+ SII ++K + +IA+ + Sbjct: 714 DDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLKVIAEGV 773 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 E + + L + CD+IQ ++ P+ + LL ++ Sbjct: 774 ETEEEWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 811 >gi|114563962|ref|YP_751476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] gi|114335255|gb|ABI72637.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella frigidimarina NCIMB 400] Length = 1020 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 144/562 (25%), Positives = 253/562 (45%), Gaps = 12/562 (2%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + S + + + + + P + I G + + + + Sbjct: 461 ASVYQNSSEAMSVFTAKGIIIDSNPAFSFITGFSQQDIQDQHLRMFET---DLQPQHFYQ 517 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 S ++G E +R + + + +++ I + + R++ + +DITE+K++ E Sbjct: 518 QLSQQLSQQGHWHGEVWMRRKNGENYLILLTINSIIRTKSQGARFVALFSDITEKKQTEE 577 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A D LTG+PNR+ L L + S N +M +D+D +K+IND LG + Sbjct: 578 LIWRQANYDALTGLPNRRMLLTFLNQEVFHSDRQHN-HFALMFLDLDYFKEINDTLGHDM 636 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L+ R+ ++ D++ARL G+ F I+L + ++ + A + K ++ P L Sbjct: 637 GDVLLIETAERLKNCVRETDVVARLGGDEFTIVLTNLEDTHGVERVAQQILKRLSEPYLL 696 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705 ++ ++ SIG + T+ +LKNA+ AMY AK G N F + R+ Sbjct: 697 GDQTAYISGSIGITLFPDDAKTTEALLKNADQAMYSAKSHGRNRFNYFTSAMQDNAQKRM 756 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +DL +A+ + L Y PI+ L ++I+ +EALI+W+HP G I ++F+ IAEE Sbjct: 757 SLIQDLKVAIIQQQFELYYQPIVDLSRQQIIKVEALIRWNHPTMGLIPPADFISIAEETG 816 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALISKTLYS 824 MI I + + W+ Q N I I IN++ D E +S Sbjct: 817 MIIDIGNWAFYQACEQAAKWKTQFNHH-IQISINMSPVQFKDESTDVENWFKQMSLLALP 875 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + I + +ES++ L G+ L+LDDFGT S L YL D +K + Sbjct: 876 TNSICIEITESLLHDIEPNVEAKLQAYGNAGMQLSLDDFGTGYSSLPYLTKYNVDYLKID 935 Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + + + +II MA + +IA+ I E + L GCDY Q + Sbjct: 936 KSFVGRLAAKNNDMCLCEAIIAMAHKLGIKVIAEGIETESQRRLLAFAGCDYGQGYLFSH 995 Query: 943 PLGFNSILK--LLKERFPLVKN 962 L + + L+++ PL + Sbjct: 996 ALCRDDFEQKYLVEKAIPLQAS 1017 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 1/140 (0%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q + E+ +L + S VWDWD+ +R++T A ILG + ++ + W+ Sbjct: 322 QAEQDLLQSNEQLALVLDSSELGVWDWDVQHNRISTNRYSADILGCSMEELNLHPKLWIN 381 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYI 513 I + D+ F ++ V R + E+++ D W++ R + + G LR Sbjct: 382 AIQLKDKFKFLRSINEIVKGRCISQRVEYQLTNMDGDSRWILQTGRVVDVDDKGKPLRVC 441 Query: 514 GIANDITEQKKSLEGILCNA 533 G +DIT+ K+ + + A Sbjct: 442 GTHSDITDIKQVEDSLSIAA 461 Score = 83.8 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 73/255 (28%), Gaps = 14/255 (5%) Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341 + + F GI + M+ Y + + L + I + + I Sbjct: 76 LSGLFFGGIPTLVATIIMALYRYH--LGGVAVWVGICALSSSALIGLIWRRYRRHELDQI 133 Query: 342 PAWILIFIWFIGLWMAITKRLDNDI---------IQPALVGGLVLIVILIGFTVIQHVLA 392 + I + + + ++ L L+ ++IG + + V Sbjct: 134 SYREFYLLGVIVHSLLLLWLFLLPFDQALDALRTVSLPIMMVLPLLTMIIGHLLAKIVFR 193 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + D + + + + P + + G + + W Sbjct: 194 GRDIQVKLQEDF-LFNNQFDIGNIGISITTKTKHWLRVNPYLCRMFGYSENEL--KALTW 250 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 H +D + + + V + + R A D + + I + + Sbjct: 251 AELTHPDDLNKDLLLFEKMVKGELNEYEIDKRFIAKDGSVIYTHVTIACRRHVQDNTFLV 310 Query: 513 IGIANDITEQKKSLE 527 I DIT QK++ + Sbjct: 311 IAGFLDITHQKQAEQ 325 >gi|254491592|ref|ZP_05104771.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxidans DMS010] gi|224463070|gb|EEF79340.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxydans DMS010] Length = 805 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 155/790 (19%), Positives = 294/790 (37%), Gaps = 58/790 (7%) Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270 +V ++ L+ + + I ++ S ++L + S ++ + + Sbjct: 7 VVLKNQALLLYQQTPYANIAIIFTVIALYWLFIDHVSADVLKIWSISICLIAVCRLGLWY 66 Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330 +L + +IT + + F + T + L+Y Sbjct: 67 SHLKNKHLAPAITWITRHVWLTLLMGFAWAGVS---TFYFLIDDVQINTLFYVLVCGVTT 123 Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390 +V + L + +D AL L + +++ ++ Sbjct: 124 AGVPVLSVWFPAYIAYTLPQVLALLGVTFYQGYHDPSTQALSYFLFIALLIYYSMLLSLA 183 Query: 391 LATG------------------YFSQGIFSDGER------------------------QS 408 + ++ + E S Sbjct: 184 RRSYKNVVNELNLRHKNSLLVNELNREVNQREELVQNRTQELLTVNAQLKASQAHMLTLS 243 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 AV S + + D P I G + + G H N + + Sbjct: 244 SAVEASPNGILITDAEGIIQYVNPRCEHITGYMAADVIGKTPEVYRSDHHN-NEMIEEMW 302 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 S + E + R + +W+ + P+ N G I ++ I DITE + Sbjct: 303 ASIRSGK--EWNGEIQNRRKSGELYWIKEYVAPIRNDEGTITHFVAIQEDITEARVLANK 360 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + A DNLTG+ NR F RL ++ + D++ + ID+D++K IND G G Sbjct: 361 LSYQATHDNLTGLINRTEFERRLIELVQDARQHDSVH-ALCFIDLDQFKVINDTCGHIAG 419 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINL 647 D++L L +R+ ++ D LARL G+ F I++ + + A +R+ I Sbjct: 420 DELLRQLGQRLIGQVRKSDTLARLGGDEFAILMRHC-DPGQSEKVATEVREVIELFQFVW 478 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706 R T+ ASIG +S +E+LK A+ A Y AK+ G N V ++ Sbjct: 479 DSRVFTIGASIGVSSIHRHTTDMTEVLKQADTACYAAKNAGRNRVYIYQDDDKHLVEQQG 538 Query: 707 ---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 ++ LA+ + L PI + E L++ + + S F+ AE Sbjct: 539 EFHWVNEIKLALTENRFELFVQPITSAKSGKAEIYEVLLRLRNKQGDLSPPSAFLPSAER 598 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 + ++ ++LE+ + +Q I IN++ L ++E+ + + L K + Sbjct: 599 YNLSDKVDRWVLEKTFDWLEKHINQVPDLR-KIAINLSGASLGNDEMLKLISDLFEKARF 657 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 S S+IK +E+ + N + + L K+G +LDDFG+ S YL ++P ++K Sbjct: 658 SASKIKFEITETAAISNLREATRFISELSKLGCEFSLDDFGSGLSSFGYLKHLPVKSIKI 717 Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 +G + +++SI + + IA+ + E ++L +G DY Q H+ Sbjct: 718 DGMFVKDMAHDPLDFEMVKSINDIGHVMGLKTIAEFVENEDVWQKLQSIGIDYGQGYHLG 777 Query: 942 SPLGFNSILK 951 P+ +SILK Sbjct: 778 RPVPIDSILK 787 >gi|89901003|ref|YP_523474.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89345740|gb|ABD69943.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] Length = 499 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 128/453 (28%), Positives = 224/453 (49%), Gaps = 9/453 (1%) Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G +LR + + +D++E+KK E + A D LTG+PNR F L+ L + L Sbjct: 46 PDG-VLRIVCV-HDLSERKKFEESLRYQATHDELTGLPNRWLFHLHLSQALVRARRT-GL 102 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R V+ +D+D ++ +ND G GD +LV + RI L+ D LARL G+ F I+L Sbjct: 103 RVAVLFLDLDYFRSVNDSFGHTTGDALLVQVGTRIRSTLRENDTLARLGGDEFAILLADM 162 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 N + A + S+ L ++++ S+G A + S +L+ A++AMY A Sbjct: 163 KNVDEAVRVASKLLLSLQASYRLQDQDVYSGGSLGLAFYPDDAQDSDTLLRYADMAMYQA 222 Query: 685 KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G + + + + L A+ L L Y P + + IVG EAL+ Sbjct: 223 KQAGRGGYACYSQEMDLRGHENMRLHTRLKEAMAQGILQLHYQPQVDVESGAIVGAEALL 282 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W P+ G++S + F+ +AE +I ++ ++LE + I +W P+ + +N+++ Sbjct: 283 RWHDPELGHVSPARFIPVAEATGLILPLSDWVLETACQQIAAWTQAG--TPLRVAVNVSA 340 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + L E ++A +++T + + +ESV M P ++R L L +G + LDD Sbjct: 341 QQFRQRNLPEQVRAALARTGAQAQWLDIEITESVAMTQPAQAREQLDALVGLGCRIALDD 400 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S L+YL +P +K + S M G +AI R+II +AK++ T++A+ + Sbjct: 401 FGTGYSSLAYLKALPVSKLKIDKSFMDGIPQDANDVAISRAIIALAKSLGLTLVAEGVET 460 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + L + GC+ Q A + + L Sbjct: 461 DAQLAFLRQYGCEVYQGWLFAKAMTVQELTSRL 493 >gi|302878223|ref|YP_003846787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581012|gb|ADL55023.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 734 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 140/628 (22%), Positives = 266/628 (42%), Gaps = 25/628 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397 + A+ + + + + ++++ +G + ++ Sbjct: 119 KWYLGAYSKYLAGLLPELWQQLGKEPEAFVATC-QSLIKIVMLDMGLALDTYMQTDRDTI 177 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 G+ E + + + + + GL +G Sbjct: 178 LGLKRYAE---DIIASLPAGLIVVNDTLKVRSVNRSFREMFGLKNGEDVSGREL------ 228 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR-YIGIA 516 D + + R A W+ + I + + + + I Sbjct: 229 -EDILPLLNLHQQAQVVLTSGIA--LRGIDAALGEKWLRLTITGIRLAEEEEEEDLLVIV 285 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K I AF D+LTG+PNR DR+ +L SA N ++ ID+D + Sbjct: 286 EDITKLKAQAVHIEQLAFYDSLTGLPNRSLLRDRVQRVLAHSARHKN-HGAILFIDLDNF 344 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIA 631 K +ND G +GD +L+ + +R+ + ++ D +AR+ G+ F ++L N + Sbjct: 345 KALNDTKGHNIGDLLLIEVAKRLQDCVRNSDTVARMGGDEFVVVLEELNEDTQQAVAQAQ 404 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 D + S+ P NL E +ASIG + + ++I ++ K+A+ AMY AK G N Sbjct: 405 DIGETVLASLNRPFNLQGFEHYSSASIGISLFRDNEIGMDDVFKHADTAMYQAKTSGRNT 464 Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + F S ++ DL A+ + L + + + + +G EAL++W HPK Sbjct: 465 LRFFDPDMQASLEARAVLEIDLRHALSLQQFKLFFQIQMNAAN-QPIGAEALLRWLHPKR 523 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S +F+ +AE+ +I I ++LE I +W + + +N++++ + Sbjct: 524 GLVSPLDFISLAEDTGLILPIGQWVLETACTQIKAWEANPLACELQLAVNVSARQFHQPD 583 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 E ++A + KT P+R+KL +ESVV+ N + + + L+++G+ ++DDFGT S Sbjct: 584 FVEQVRAALEKTGADPARLKLELTESVVLNNINDAVIKMSDLKEVGVRFSMDDFGTGYSS 643 Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL +P D +K + S + I+++II M ++ +IA+ + E L Sbjct: 644 LSYLTQLPLDQLKIDLSFVYNIGIKPTDAVIVQTIISMGNSLGMEVIAEGVETEAQRDFL 703 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955 R GC Q + P+ L++ Sbjct: 704 ERNGCHAYQGYLFSKPVSIGEFEGLIRR 731 >gi|172035288|ref|YP_001801789.1| hypothetical protein cce_0372 [Cyanothece sp. ATCC 51142] gi|171696742|gb|ACB49723.1| unknown [Cyanothece sp. ATCC 51142] Length = 869 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 124/442 (28%), Positives = 224/442 (50%), Gaps = 11/442 (2%) Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + + D LTG+ NR+S RL + + + + V+ ID++++K IND LG Sbjct: 429 KTVYQTYHDPLTGLANRRSLEQRLQQLNHQNISQQSELVAVLFIDVNRFKSINDGLGHQA 488 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L ++++R+ + L L R+ G+ F I L + + FA +++ ++ P++ Sbjct: 489 GDYLLTAMSQRLQQQLNSRKHLGRVGGDEFAIWLKPVKDKQDVVSFAEKLQQVLSQPLSW 548 Query: 648 LEREITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKH--RGGNHVESFRVSSFRSD 703 +EI T ++G + + + E+L+ A++AM+ AK + + + Sbjct: 549 QGQEIYPTVTVGIS-FEETGRNFHGPELLRYADIAMHKAKEFNCSRPQIFEAGMDTQAVQ 607 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R ++ DL L +E E L Y PII L I G EAL++W+ G +S +F+ +AEE Sbjct: 608 RWHLETDLRLGLEQKEFQLYYQPIISLTTGNIAGFEALVRWNSKTRGFVSPGDFIPVAEE 667 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTL 822 +I + ++L R I +W ++ P + + +N++ + L + +Q ++ Sbjct: 668 TGLIVPLGEWILTEACRQIRAWHERFPRNPALIMSVNLSGRQFSQPNLVKQIQTILDVAG 727 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 R+KL +ES++M N E + LL RL+ +G+ L++DDFGT S LSYL P DT+K Sbjct: 728 IEGDRLKLEITESMIMNNVEEAISLLNRLKGLGLRLSIDDFGTGYSSLSYLHRFPVDTLK 787 Query: 883 FNGSLMTGSTEKRIA-----ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 + S + + + + I+R+II + N++ +IA+ I E + L + C Y Q Sbjct: 788 VDKSFVGRMEDGKDSHKYIQIVRTIISLGHNLDLDVIAEGIETEGQMNILESLRCKYGQG 847 Query: 938 SHVASPLGFNSILKLLKERFPL 959 + PL + LL E P+ Sbjct: 848 YLFSRPLSSENAEALLAEDNPI 869 >gi|229153511|ref|ZP_04281689.1| Sensory box protein [Bacillus cereus m1550] gi|228630115|gb|EEK86766.1| Sensory box protein [Bacillus cereus m1550] Length = 735 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 165/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + A + T + LF ++F Sbjct: 6 TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSA 65 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351 I ASI+L I+Y K ++ ++P + +I + Sbjct: 66 EINYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125 Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 L + + + Q + ++ Q + + +R Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + + +I D + + Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++++ I + P N +++ GIA DIT + Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L IL+ + T+ N V+ +D+D++KKIND LG Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ DI+AR G+ F I+L + A + + P Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + E+++T SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E + + L + CD+IQ ++ Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKQLNLKVIAEGVETEEEWEFLHKQNCDHIQGFFISK 718 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 719 PVSSKDVWMLLHKK 732 >gi|67920838|ref|ZP_00514357.1| PAS:GGDEF [Crocosphaera watsonii WH 8501] gi|67856955|gb|EAM52195.1| PAS:GGDEF [Crocosphaera watsonii WH 8501] Length = 906 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 134/556 (24%), Positives = 253/556 (45%), Gaps = 14/556 (2%) Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 E+ + V + D++ D A A + G + + + Sbjct: 356 EEQLRIFECIVATTQDMMALIDQNYTYQIVNDAYARNFQRAKEEIIGK--SVVEIVGEEF 413 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 D + LD + R + F + + + P +N + + +DIT Sbjct: 414 MDTIQPHLDRCLQGEEVRYETWFDL---GEEQRYYHALYSPYREANKGVTSAVVNIHDIT 470 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + K+S + + A D LT +PNR RL + + + + V+ ID+D++K IN Sbjct: 471 QIKESEQKLYYQAHHDTLTNLPNRMLMNTRLEQSIQQATRKGD-KLAVVFIDLDRFKNIN 529 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG GD +L L +R+ + + D +AR+SG+ F +IL ++ + ++ Sbjct: 530 DSLGHRAGDSLLEQLAQRLCQQRRKSDTVARISGDEFVVILEDIKDTQHAGMVVGKLMRT 589 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 P + R I +T+S+G + + + +L+NA+ AMY AK G N +R Sbjct: 590 FEEPFIIEGRTIKMTSSMGLSLFPDDGTDVATLLRNADAAMYRAKEDGRNTYCFYRKEMT 649 Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++++ L A++ E YL+Y P I ++ +G+EAL++W HP+ G +S ++F+ Sbjct: 650 STVFEYMLLENALREALKKKEFYLLYQPQIEMLSHRCLGIEALLRWHHPELGVVSPAQFI 709 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAE+ +I+ I ++L R W +Q I +N+A+ + + + ++ ++ Sbjct: 710 PIAEQSGLIQEIGTWVLTTACRQAKIWLEQKLDFG-RIAVNVAAPQIQHGDFIQVVENVL 768 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 T + ++L +E ++M E++ L +L+ +GI LT+DDFG S L+YL +P Sbjct: 769 KTTGLPAAYLELELTEGLLMKQTEQNIKQLEKLQGMGIKLTIDDFGIGYSSLNYLKRLPI 828 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S + AI +++I + + IIA+ + E L GC Q Sbjct: 829 DKLKIDQSFIRDLPHDTNDTAISQAVIALGYALNLQIIAEGVENEEQAAFLKEKGCHQAQ 888 Query: 937 DSHVASPLGFNSILKL 952 + P+ + L Sbjct: 889 GYFFSQPIPPQQVSAL 904 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Query: 385 TVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + VLA + +Q + E + A+ S W++D+V ++V + ++ I G+ G Sbjct: 82 AQLSQVLAELHSTQATLNSRENHYAQALKFSQTGSWEFDVVTEKVFWSEEVERIWGMEPG 141 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + G ++ IH D ++++ + + + E+R+ D HW+ Sbjct: 142 TFRGELQQVQGAIHPEDVEHWQKNVQDCRE-KGKEHRIEYRIIHPDASIHWVQALGSAEK 200 Query: 504 NSNGDILRYIGIANDITEQKKSLEGI 529 + G+++R +GI DITE+K+ Sbjct: 201 DDQGNVIRLLGIVMDITERKQLELEH 226 Score = 100 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 4/162 (2%) Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428 V L+ IV+ I Q L + + +VW D Sbjct: 203 QGNVIRLLGIVMDIT-ERKQLELEHKETEMALRESEALFRNMADHAPVMVWVTDETGYST 261 Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + G G+ G WL IH ++R+ R +R ++R R Sbjct: 262 YVSQSWYDFSGQKEGTALG--FGWLDVIHPDERELARKRFLE-FNEKRQPFSIDYRFRRR 318 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 D + W I +P +++G YIG DI+++K+ E + Sbjct: 319 DGVYCWGIDAGKPRFSADGQFKGYIGSVMDISDRKRMEEQLR 360 >gi|28867636|ref|NP_790255.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213967820|ref|ZP_03395967.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] gi|301382457|ref|ZP_07230875.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato Max13] gi|302061151|ref|ZP_07252692.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato K40] gi|302132056|ref|ZP_07258046.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850871|gb|AAO53950.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213927596|gb|EEB61144.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato T1] Length = 897 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 151/571 (26%), Positives = 269/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGNK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTSSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F ++L + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDN-TGQEAGQATASQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILKEEQLDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ L R+P + Sbjct: 868 DVGQGYLFDRPIPGEELIEKLT-RYPRRPSA 897 >gi|124515987|gb|EAY57496.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Leptospirillum rubarum] Length = 878 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 129/618 (20%), Positives = 264/618 (42%), Gaps = 14/618 (2%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 + + + ++ + + T I ++ D Sbjct: 266 FGVASASAFPIRKGEEIVALLVILSNRPNFFETESIGLLTRIAEAMSYALDDFERGQDLF 325 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-- 463 SL + ++ DI + G + + G + L + Sbjct: 326 LTSLVFDAVPEGIFITDIDGRITRVNEAFCRLSGFSLDELLGRDADTLT----AGLEKGI 381 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + R G ++ F + D + + I + D + + D+T + Sbjct: 382 LCASIRDAIDQR-GTVEGIFELIRKDASSYMVEATITLVEEPGRDSRHVVLLLKDVTAKM 440 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + I A D+LTG+ NR + ++RL ++ S + + +D D +K IND L Sbjct: 441 ERERQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNRGA-MALFFLDFDDFKGINDTL 499 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G + GD L + R+ ++ DI+ARL G+ F I++ E++ I FA + + Sbjct: 500 GHSAGDFFLKVIGHRLSGSVRPTDIVARLGGDEFVIVVALESD-ESILAFAQKILDILGA 558 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P+++ + + + S+G A++ + ++L+ A++AMY AK++G N + F Sbjct: 559 PVSIQAQTVQTSVSVGIATFPRDAESVEDLLRKADIAMYQAKNKGKNTWQFFNGEMEERI 618 Query: 704 RVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 R+ +++ L ++ +L + P I + +VG+EAL +W P G I + F+ +A Sbjct: 619 RLRFEQEQMLKTGLQEGAFFLHFQPQIDVFRRRLVGVEALARWPVPAGGTIGPASFIPLA 678 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE I A ++++ R I W P I + +N++S+ ++ ++S+ Sbjct: 679 EETGTILAFGEWVIQEAFRVIQFWSAS-GRPRIRVGVNVSSRQFWSPTFWTFLREILSRH 737 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + +E+V+M +PE + L L+++GI + +DDFGT S LSYL P D + Sbjct: 738 AELTRWLTFELTETVLMRDPETAGDQLSWLKELGIRIAIDDFGTGYSSLSYLSRFPVDEI 797 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + + + ++++II M K++ ++ + E +++ L +GC IQ Sbjct: 798 KVSQEFVMRMAKSPRDLKLVKTIIQMGKSLRLNLVGEGAETEEEVRMLEGLGCHVIQGFA 857 Query: 940 VASPLGFNSILKLLKERF 957 ++ PL + + Sbjct: 858 LSRPLPQPEMESFWNQYL 875 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 3/111 (2%) Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 +G + D + V +LG + + + H D + Sbjct: 34 AGIGIVDAET-GRYVFVNARWCKMLGYDPQEL--SLLSIRDVTHPEDWPKTEACIREAQE 90 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R E R D W + +R + GI D ++K+ Sbjct: 91 GLRETYFVEKRFLRKDKTVFWGFLLVRSFRDPATGNRLLNGIILDFDDKKR 141 >gi|71733928|ref|YP_276900.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482970|ref|ZP_05637011.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71554481|gb|AAZ33692.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326351|gb|EFW82404.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320331657|gb|EFW87595.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330891357|gb|EGH24018.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. mori str. 301020] gi|330985928|gb|EGH84031.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011788|gb|EGH91844.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 897 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 151/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGHK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFVRDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F ++L + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDN-TDQEAGQATASQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILREEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ LK R+P + Sbjct: 868 DVGQGYLFDKPIPGEELIEKLK-RYPRRPSA 897 >gi|297583861|ref|YP_003699641.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens MLS10] gi|297142318|gb|ADH99075.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus selenitireducens MLS10] Length = 778 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 161/787 (20%), Positives = 319/787 (40%), Gaps = 42/787 (5%) Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 + ++GV + + I V S + + + +L + F Sbjct: 17 MKERLLSRIFLSVLGVGFIFTVVNFINEWVLGSVQMTYAVILFYSIL-LVMHAF------ 69 Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 A + I+F + + + F A + +S Sbjct: 70 --------RRRIHFEIRAYTIIFILFGTGIVSGLTYGMVGSSMLFYVGAAYVAMLLLSKR 121 Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL--LIPAWILIFIWFIGLWMAITK 360 + ++ I +++ I+ + + AV + + ++ FI+F+GL + Sbjct: 122 ETIYWMAMTLFIYLVIYVFWVSGILTYEFSVMDYAVSETTLISRMVAFIFFVGLLIFSQW 181 Query: 361 RLDNDIIQPALVGGLVLIVILIGF-TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 ++ ++ + + +I+ + I E+ V + D+++ Sbjct: 182 MVNEFLVDKMNDLKQTHDELRLSDKQLIEQYNEILDNREEIKLKEEQYRSIVENTEDLIY 241 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYR 475 R +T + + + + G + I NDR LD + + Sbjct: 242 AVTPERTLITANSSFSAFVKMEQSELIGTSLDKLKGLATLIDENDR-----NLDHVLAMK 296 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 +Q+ R+ + + I P+ +++G + + +D+TE E I A+ Sbjct: 297 -EPIQFVQRIEKPSGRQIY-HTDITPVMHADGSLTMMLIKHHDVTELVHKDEQIEQLAYF 354 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D LTG+ NR F I+ D + ++ D+D +KKIND +G GD +L + Sbjct: 355 DQLTGLVNRYHF----EAIISEKIKDIGHQFGIIYFDLDHFKKINDTIGHFAGDYLLKQV 410 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKI----ADFAIAMRKSIAMPINLLERE 651 + +L LARL G+ F ++L + + + A + K+ P+N+ Sbjct: 411 AETLQGVLPDDATLARLGGDEFAVVLDETSEGHALMRLLEEVADTIVKTARKPVNIDGVH 470 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709 ++AS G + + E++KN + AMY AK+ G N F ++ Sbjct: 471 YYISASAGIVVYPEHGRSHDELMKNVDTAMYKAKNDGKNKCIFFNAEIKDETDQSILLEA 530 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L A E E+Y+ Y P++ +E + G EAL++W+ +G +S + F+ + E+ MI Sbjct: 531 HLRHAFEYDEMYVDYQPLVSGKNEHVRGFEALMRWNSNYFGPVSPAVFIPVLEQTGMIVE 590 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 ++L+ I ++ + + +N++ L ++ ++ + +P+ ++ Sbjct: 591 FGEWILKEALNKIHEL-EKVSDQSYVVSVNVSLLQLKQERFATNVKRIMDEWGVNPASVE 649 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES++ + E +L L++ GI + LDDFGT S LSYL P DT+K + S Sbjct: 650 LEITESILADDVELIINVLSELKQYGIRIALDDFGTGYSSLSYLRKFPLDTLKIDKSFSE 709 Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 G +++ ++ SII MA I ++A+ I + L R CDY Q + PL Sbjct: 710 GIGQQQKQLELIGSIIQMAHKIGLEVVAEGIEEPEQVAYLKRHHCDYFQGYYFHKPLNDK 769 Query: 948 SILKLLK 954 +LK++K Sbjct: 770 DLLKVVK 776 >gi|146281508|ref|YP_001171661.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas stutzeri A1501] gi|145569713|gb|ABP78819.1| response regulator/sensory box/GGDEF domain/EAL domain protein [Pseudomonas stutzeri A1501] gi|327479685|gb|AEA82995.1| response regulator/sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 707 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 122/569 (21%), Positives = 251/569 (44%), Gaps = 11/569 (1%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 + +Q + S + + + + + P IA +L + G Sbjct: 136 NRRDLQLLTQQLDSARAFNASVLSNAAEGILVVAEDGYISFANPAIAGMLHTRVEDLQGT 195 Query: 449 IRNWLPYIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 D++ + +E ++ A+ + + P+ Sbjct: 196 PL-LSHLAAPEMPDSWHESDFYRYWRSGSTYRLHEAQLHTANGTPLPVALSSSPLPRQQ- 253 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + IA D++ + + A D+LTG+ NR+ F L + L + R Sbjct: 254 --RSMVVIALDMSVVRNLHTQLETQAVTDSLTGLLNRRGFHQALESSLARVDRNGK-RMA 310 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ ID+D +K+IND LG GD++L + R + ++ DI+AR+ G+ F +L S ++ Sbjct: 311 ILYIDLDGFKRINDSLGHDAGDEILCKVARLLETCMRPYDIIARMGGDEFTALLDSLDHP 370 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A A + + I++ + E+T+ ASIG A + ++ ++L++A++AMY AK Sbjct: 371 EDAARVAEKLIELISVRHKIDGTEVTLGASIGIAHFPDCGVSVDQLLRSADMAMYEAKRA 430 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G F ++ R+M++E+L A E ++ L++ P + L ++ G E L++W Sbjct: 431 GRRQYRFFSSDMNERAHARLMMEENLRSATERNDFELLFQPQVMLASGKLRGFEGLLRWP 490 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 G F+ + EE +I+ + ++L W + + +N++ Sbjct: 491 QGDAGENQPGNFIPLLEETRLIERVGEWVLREGMDQYCRWLPAFG-SDLILSLNVSPVQF 549 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 L + ++ L+ + +P++++L +E +M + E+S L +LRK+G+ + +DDFGT Sbjct: 550 SRAGLFDVLRRLLDEYQLNPAQLELEVTEGTLMQDLEQSCEKLRQLRKLGVRVAIDDFGT 609 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL + DT+K + + + + A++ +II + +N+ ++A+ + Sbjct: 610 GYSSLAYLRHFELDTLKIDRLFIANMLDSPRDAAVVSTIIDLGRNLGLEVVAEGVETLAQ 669 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 L GCD +Q V+ + Sbjct: 670 RDWLLHNGCDVMQGFLVSPAVTAEQARAF 698 >gi|116686645|ref|YP_839892.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia HI2424] gi|116652360|gb|ABK12999.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia HI2424] Length = 693 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 155/658 (23%), Positives = 287/658 (43%), Gaps = 17/658 (2%) Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 + ++ + A + + S+ GY+ A+ L+ I I LW+ Sbjct: 39 AARWWLVGGACVMGTGIWSMHFVGMLAFALPIPLGYDPAITLLSLLIAIVCSTCALWLVC 98 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 L + + + + + ++ G + ++AV+ SG ++ Sbjct: 99 RDTLKWRRLCGGAMLMGAGVAGMHYTGMASMRMSPGIQYDPLLVCLS-VAIAVVASGAVL 157 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W I R +L L S + G + +H R L S G R Sbjct: 158 WIVFIRR----ANSSRVRLLNLGSAVLMGAA---IAGMHYTGMAAARFPLGSLCGAAGSR 210 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + + ++ +S + + + T ++ + + A DNL Sbjct: 211 MDAGWLALVIIVATLAILAIALIVSILDLRLEARTAVLA--TSLAEANQELTYLALHDNL 268 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 T +PNR DR+ + + + +M +D+D +K +ND G VGD +LV + RR Sbjct: 269 TKLPNRVLLEDRIDQAIQAADREHG-SFALMFMDLDGFKAVNDAYGHHVGDLLLVDVARR 327 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 IG L+ D +ARL G+ F + ++ + AD A + I P + E E+ V+ASI Sbjct: 328 IGANLRSQDTIARLGGDEFV-LAVAVDEPADAADVADKILAVIRKPFRVSEHELRVSASI 386 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVE 716 G A + + +++ NA+ AMYHAK G N F S + + + I ++L LA+E Sbjct: 387 GIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASMNANVREHLKIVQELRLALE 446 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 EL L Y P + I+G+EAL++W HP G IS +F+ IAE+ +I I ++L+ Sbjct: 447 RRELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFISIAEKTGLIVPIGEWVLD 506 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 R + W D + +N++ L ++A + + P + L +ES Sbjct: 507 EACRQMRVWCDA-GRTDWTMAVNLSPLQFGHASLIRVVEATLQRHALEPHCLTLEITEST 565 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 M + + S +L +L +G+ +++DDFGT S L YL +P +K + + + Sbjct: 566 AMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFIRDLEHDTE 625 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 AI+ +I+ + + ++ I+A+ + + LTR+GC+ +Q + P+ + +++ Sbjct: 626 DAAIISAIVALGRALDLKIVAEGVETAAQQQFLTRLGCNSLQGFLLGRPMPADHFVEM 683 >gi|87199442|ref|YP_496699.1| diguanylate cyclase/phosphodiesterase [Novosphingobium aromaticivorans DSM 12444] gi|87135123|gb|ABD25865.1| diguanylate cyclase/phosphodiesterase [Novosphingobium aromaticivorans DSM 12444] Length = 724 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 127/556 (22%), Positives = 236/556 (42%), Gaps = 23/556 (4%) Query: 410 AVLGSG-DIVWDWDIVRDRVTTTPDIAT----ILGLASGSMHGPIRNWLPYIHINDRDNF 464 A +G +W D + T ++G ++ R+ + Sbjct: 50 AFEQAGFGWLWATDAEGRLTYVSLSAHTKAAGMIGRPIATLIETDRDG-----PGESAGR 104 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R L F D W + +P + +G Y G A D+T++ Sbjct: 105 PLSFQLSKRGRINDLVVRFSGDERDG--RWWSLSGQPSVSPDGSFAGYRGFARDVTQEYT 162 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 A D+LTG+ NR RL IL + N +M++D+DK+K +ND +G Sbjct: 163 RKREDSRAAEFDSLTGLYNRHRMTRRLDAILA-AFRQANRCCGLMMLDLDKFKHVNDTMG 221 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD++L + R+ +++ + RL G+ F IIL ++ ++ + A + + ++ P Sbjct: 222 HPAGDELLRQVAERLRKVVGERGEIGRLGGDEFQIILPDIDDRGRLGELAAKVIQIVSQP 281 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 + + + S+G A ++ +A+LA+Y AKH G F + Sbjct: 282 YAIEGKRAVIGTSVGIAVAPHDGEDREGLVSSADLALYAAKHGGRGQFRFFSTELKDEAQ 341 Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + +DL A+ EL L Y P++R+ D +VG EAL++W+H + G I S F+ IAE Sbjct: 342 ERTILNQDLREALARDELELHYQPVVRIEDNIVVGFEALMRWNHTERGPIPPSLFIPIAE 401 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I + + L + D +W D + + +N++ + ++++ Sbjct: 402 ESNLIVPLGEWALRKACEDAAAWPDS-----VRVAVNVSPVQFGVAGFVTSVATAVAQSG 456 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P R++L +E+V M + E L+ +G+ L LDDFGT S LSYL PFD +K Sbjct: 457 IDPERLELELTETVFMRDSEAVEETFSALKALGVRLALDDFGTGYSSLSYLRSAPFDKLK 516 Query: 883 FNGSLM---TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 + S + + I+ +++ +A + + + ++ + G +Q Sbjct: 517 VDRSFVETCAAKDQNSAKIISAVLGLADALGMETTVEGVEAFDQLEVVRERGAKLVQGHI 576 Query: 940 VASPLGFNSILKLLKE 955 A + + + L + Sbjct: 577 FAHAMPHAEVAERLAD 592 >gi|228942495|ref|ZP_04105031.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975429|ref|ZP_04135984.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982062|ref|ZP_04142354.1| Sensory box protein [Bacillus thuringiensis Bt407] gi|228777600|gb|EEM25875.1| Sensory box protein [Bacillus thuringiensis Bt407] gi|228784223|gb|EEM32247.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817178|gb|EEM63267.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 735 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 166/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + A + T I LF ++F Sbjct: 6 TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILIYGYIHLFQLNFGMKTSA 65 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351 I ASI+L I+Y K ++ ++P + +I + Sbjct: 66 EINYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125 Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 L + + + Q + ++ Q + + +R Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + + +I D + + Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQHSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++++ I + P N +++ GIA DIT + Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L IL+ + T+ N V+ +D+D++KKIND LG Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ D++AR G+ F I+L + A + + P Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + E+++T SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLISTISKVLEETELK 598 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E + + L R CD+IQ ++ Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDHIQGFFISK 718 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 719 PVSSKDVWMLLHKK 732 >gi|182438510|ref|YP_001826229.1| hypothetical protein SGR_4717 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467026|dbj|BAG21546.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 611 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 141/584 (24%), Positives = 271/584 (46%), Gaps = 29/584 (4%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 I S+ A + + D V + +LG A+ + G + L + + Sbjct: 26 IASELRDHRAAFNAATLPMGVVDGRGHVVRANEALGGLLGTAAAVLAGRRASELLDLASD 85 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIAND 518 DR + RR R + R++ D + W I + PM+ + + R + D Sbjct: 86 DRT--WHAYREVLLGRRSRFRCTRRLKHPDGRSLWAEITVVPMTGASAAEPARVLLTVAD 143 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-------TDDNLRPTVMVI 571 ++++++ E + D +T +PNR F +RL + L+ + R + + Sbjct: 144 VSDRRELQERLRHLQMHDPVTRLPNRTLFFERLASALETPPYQDDSMPPRQHARIGLCYL 203 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD--------ILARLSGNRFGIILIS 623 D+D +K IND LG GD +L ++ R+ + + ++ARL G+ F I++ Sbjct: 204 DLDGFKAINDTLGHRTGDRLLAAVAARLTDCAENDASRRPGGSRLVARLGGDEFAILVED 263 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + ++A+ A ++ ++ P +L + ++V+ASIG T++ + + +++ A+ +Y Sbjct: 264 SAGTEELAELARSVLAALQQPFDLAGQRLSVSASIGVVERTAAGTSPTGLMQAADTTLYW 323 Query: 684 AKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G F + L AVE E L Y P++ + D + G+EAL Sbjct: 324 AKADGKARWTLFDPERNAHRMTRQSLSSTLRPAVERGEFTLEYQPLVGMADGVLRGVEAL 383 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINI 800 ++W+HP++G + + F+ IAEE I + ++L R W D + PP+FI +N+ Sbjct: 384 VRWNHPQFGVLPPNRFVQIAEEDGSIVQLGRWILRTACRQARRWELDHPDEPPLFISVNV 443 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 A + + D++L + ++++T +P ++L +ES VMG+ R L L +G+ + + Sbjct: 444 AVRQVWDSDLVADVAQILAETGLAPGLLQLELTESAVMGSGGRPLRALQALSDMGVRIAI 503 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPMAKNIETT 912 DDFGT S L+YL +P +K +G+ + G + I+ +++ +A + T Sbjct: 504 DDFGTGYSNLAYLSRLPVSVLKLDGAFVKGFRYEDGTHPSPADETIVEAMVQLAHRLGLT 563 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + A+ + + L R+GCD Q + + I L+ R Sbjct: 564 VTAECVETAGQAERLRRIGCDTGQGWLYSRAVAPEQIAGLIGSR 607 >gi|297583053|ref|YP_003698833.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens MLS10] gi|297141510|gb|ADH98267.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus selenitireducens MLS10] Length = 801 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 127/561 (22%), Positives = 249/561 (44%), Gaps = 11/561 (1%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455 + + + + + + +G+ V + +TI + G R Sbjct: 249 EKELEAHNQMLASVLENTGEGVVITNANSQIEWINQAFSTITEYTEQELIGKNPRLLKSG 308 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 H F + + G+ E R + + ++I + + G+ RY+GI Sbjct: 309 QH---NAAFYHSMWHDLTTY-GKWTGEIWNRRKNGDVYPEWLKIFALKDEEGEPYRYVGI 364 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D++E + E I QD LTG+ NR + L L + + T++ DID Sbjct: 365 VTDMSEVRAREERIDSLINQDKLTGLYNRYYVMRELEQDLIAAERYNQT-ATILFGDIDA 423 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IN+ LG A GD++L + + E+ ++ARLS + F I+ + ++ + Sbjct: 424 FKSINENLGHAAGDELLRQMADLLQEVFAK-ALVARLSSDEFAIVFPRGTDDFEVRERLG 482 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + P L + +T S G A + + +++ NA++AM+HAK R GN + + Sbjct: 483 LFFNELKKPFTLHNEDFYITCSFGVARYPDNGRERDDLMLNADIAMHHAKKREGNTFDYY 542 Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + +K + A++ + +L Y P + + D IVG E L++ D P+ G +S Sbjct: 543 TDVLGNQVKREFKVKTVIQRALDENLFHLHYQPTLSVQDGVIVGAEVLLRLDDPEEGRVS 602 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 EF+ +AE+ I +I ++L ++ D +F+ +N++ + L + E Sbjct: 603 PGEFIPVAEKFGFIYSIGDWVLRNACKE-ALGTDAYRDGNLFLAVNVSVQQLENEAFPEQ 661 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + A++ +T + R+ +E + + + L L ++GI + +DDFGT S L + Sbjct: 662 VDAILEETGFPAERLVFEVTEETSISDSDLVSGTLNALIEMGIQVAIDDFGTGYSSLGKI 721 Query: 874 GYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 + +K + S + EK I+ +II M K++ ++A+ + E + L GCD Sbjct: 722 HQLNMHQLKIDQSFIRDI-EKTTDIVHAIIAMGKSLRLNVVAEGVETEEQLAFLKEAGCD 780 Query: 934 YIQDSHVASPLGFNSILKLLK 954 + Q ++ P+ F +L++ Sbjct: 781 FAQGFYLHRPMPFADYRQLIE 801 Score = 50.3 bits (119), Expect = 0.002, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 6/128 (4%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI-NDRDNFR 465 S + + + G + G + I+ +D + + Sbjct: 138 FKALFNQSPYAIAILNRDYRISEVNGHFEALFGYGREEVLGLSPEF--VIYPLDDESSMQ 195 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 +D R L + + D + + P+ + ++ + I D T +K+ Sbjct: 196 DHIDQM--ERGVILTRDTLRKHKDGHLINVELIALPVYIES-HLIATLAIYVDQTREKEL 252 Query: 526 LEGILCNA 533 A Sbjct: 253 EAHNQMLA 260 Score = 39.2 bits (90), Expect = 4.0, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 8/131 (6%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIR 450 A S+ E V + + + + + + Sbjct: 7 ARQSPSETGRDYRELYQELFEHHHLPVLIIEPETGLIRDVNQKAVSFYQYSKDELMNMVI 66 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + + + + + + + FR R D + + + P+ + NG L Sbjct: 67 SDINILDPD---TIKAKMYAAKKNNTNSFH--FRHRLKDGEIRDVKVDSIPV-DFNGTHL 120 Query: 511 RYIGIANDITE 521 Y + DITE Sbjct: 121 LY-SLITDITE 130 >gi|172036313|ref|YP_001802814.1| hypothetical protein cce_1398 [Cyanothece sp. ATCC 51142] gi|171697767|gb|ACB50748.1| hypothetical protein cce_1398 [Cyanothece sp. ATCC 51142] Length = 967 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 149/695 (21%), Positives = 294/695 (42%), Gaps = 40/695 (5%) Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI---------PAWILIFIW 350 + + TA+ RI L V+ ++ + + V + A + Sbjct: 275 ARLGLIQTANYTRIGLLITVITALALTLWVSLWLGKTIVQPLTQLTDVSEHIAKGSLEET 334 Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 + + + + L + L S I R S A Sbjct: 335 LNFSASNEFGIVATALNKMLIQLRETLADLEDRVRERTQALEAKTESLEITLKKLRFSQA 394 Query: 411 -----VLGSGDIVWDWDIVRDRVTTTPDIATILGLA---------SGSMHGPIRNWLPYI 456 + V +D + + + +L ++ + + + Sbjct: 395 NYHQLINNLQAGVIIYDPRGNMMMANLAASELLDISSESLSLYSSPEARVTFVDESGATL 454 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYE---FRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + + + Y R R D W ++ P + + + + Sbjct: 455 PPQEHP-----CQQVLTTQVPLHNYVMGIHRQRPLD--SIWTLVNAFPAFDDQNHLTQVV 507 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + DIT++K + E + A D LTG+PNR +RL + + V+ ID+ Sbjct: 508 VLLLDITDRKLAEEQLRYRALHDALTGLPNRTLLTERLDHAIQRVKRYPDSLFAVLFIDL 567 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K IND LG VGD +L+ + + ++ D +ARL G+ F I+L + + ++ Sbjct: 568 DRFKVINDSLGHLVGDQLLIYIANTLKRHVRSSDTVARLGGDEFVILLENLTSPHEVVQV 627 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + K I PI L+ + + +ASIG A + T ++L++A+ AMY AK E Sbjct: 628 IERIEKDIKKPIQLMNKTLFTSASIGIALSSPEYGTGEDILRDADNAMYRAKGNNLTSYE 687 Query: 694 SFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F V ++ ++ L A+E + L Y PI+ E++G EAL++W HP+ G Sbjct: 688 LFNVEMRQTMLEVFELETSLRQALEQQQFILHYQPIVSATSLELLGFEALVRWVHPEKGL 747 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNEL 810 IS +F+ +AEE +I ++ ++ + + W M + + INIA+ + Sbjct: 748 ISPGKFIPLAEETGLIIPLSEWIFQEACSQMAQWCADFRMASSLKMSINIAAYHFQSPQF 807 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 E + ++++T +KL +ES+++ N +R L+ +L++ I ++LDDFGT S L Sbjct: 808 LEKIDQILTETQLLGKNLKLEITESLLIKNTDRFLSLVPQLQQRQIEISLDDFGTGYSSL 867 Query: 871 SYLGYIPFDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 +YL P +T+K + S + G + ++I+ +II +A+++ ++A+ + + ++ Sbjct: 868 NYLKRFPINTLKIDKSFVDGLDYQKNQADVSIIEAIIHIAQSLGMDVVAEGVETDRQRQQ 927 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 L ++GC+ IQ ++ PL + + + + Sbjct: 928 LQQLGCEAIQGYLMSPPLTSEKAREFINRQLSVTS 962 >gi|289624674|ref|ZP_06457628.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330871114|gb|EGH05823.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 897 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 151/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGHK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFVRDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F ++L + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDN-TDQEAGQATASQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILREEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ LK R+P + Sbjct: 868 DVGQGYLFDKPIPGEELIEKLK-RYPRRPSA 897 >gi|168184847|ref|ZP_02619511.1| putative diguanylate cyclase [Clostridium botulinum Bf] gi|237793677|ref|YP_002861229.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657] gi|182672126|gb|EDT84087.1| putative diguanylate cyclase [Clostridium botulinum Bf] gi|229261773|gb|ACQ52806.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657] Length = 892 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 236/452 (52%), Gaps = 11/452 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + + A N + Sbjct: 447 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTISNYA---NEKFA 503 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R LL + RL G+ F II+ + + Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 562 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ I E ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 563 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 622 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E EL + + PI L +I+ +E+L++W Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKHELLVYFQPIYHLKTSKIIAMESLVRWK 682 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 I+ ++F+ +A+ + I I+ ++L + W+ Q P+++ +NI+ K + Sbjct: 683 F-DNKIINPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 740 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L++ GI ++LDDFGT Sbjct: 741 KDKNFVDNVLNILKTTKLDPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 800 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ IIA+ + Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 860 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954 ++ L + CD+IQ +++ PL + K ++ Sbjct: 861 LEILQELDCDFIQGFYISEPLPIKTFESKFIR 892 >gi|88704969|ref|ZP_01102681.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71] gi|88700664|gb|EAQ97771.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71] Length = 943 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 135/561 (24%), Positives = 255/561 (45%), Gaps = 11/561 (1%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + R + S + V ++ + I G A G I Sbjct: 371 HEAEAKLRRVAEVFSSSAEAVMMTELDGSIIDVNNAFTEITGYARNEAIGETP---EIIS 427 Query: 458 INDR-DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + F + + + GR Q E R + ++ + + + + Y+ Sbjct: 428 SDQHSPQFFQEMFRIIDAQ-GRWQGEVWNRRKNGDHFPCLLTVSAVRDEKSRVTGYVASF 486 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT K++ + A QD LTG+PNR L + L +A N T++ ID+D++ Sbjct: 487 SDITTIKQNEHRLELLARQDPLTGLPNRTHLRHTLDSRLARAAP-GNRSTTILFIDLDQF 545 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND LG + GD++L + R+ + L+ DILAR+ G+ F +L ++ A Sbjct: 546 KDVNDSLGHSAGDELLKVCSSRLLDSLRDDDILARVGGDEFVALLFDVPGYENVSTIASK 605 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + PI + + V+ASIG + + +L+NA+ AMY AK G E + Sbjct: 606 LIAVLEEPIAIGGETVRVSASIGICRYPEDGADTETLLRNADTAMYAAKKAGRGTWECYS 665 Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + +++ A+ ++L +VY P + G EAL +W P +GN+S Sbjct: 666 QAMTDVATRHLLLSGAFREALTANDLEIVYQPKYDADSLALTGFEALSRWTSPDFGNVSP 725 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ IAE +I ++ +L + + WR +PP I +N++ + L + + + Sbjct: 726 EEFIAIAENNGLIVELDYKVLGGVCAQLSRWRAARLLPP-KIAVNVSGRTLQQADFYQRL 784 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ S ++L +E+ ++ PE+ +L ++R +G+++++DDFGT S LSYL Sbjct: 785 RDILEHHDVSGESLELELTETALLPQPEKQAGVLDQIRALGLTISIDDFGTGYSSLSYLQ 844 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P T+K + S + ++ AI +II MA+ ++ I+A+ + E + L G Sbjct: 845 RLPVATLKIDASFVRELSVSKDADAIAEAIIAMARALDMGIVAEGVESEQQARFLRERGP 904 Query: 933 DYIQDSHVASPLGFNSILKLL 953 +Q + + + +L Sbjct: 905 MSVQGFLYSKAVSAQAATDML 925 >gi|262278362|ref|ZP_06056147.1| sensory box protein [Acinetobacter calcoaceticus RUH2202] gi|262258713|gb|EEY77446.1| sensory box protein [Acinetobacter calcoaceticus RUH2202] Length = 950 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 130/581 (22%), Positives = 268/581 (46%), Gaps = 11/581 (1%) Query: 388 QHVLATGYFSQGIFSDG---ERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q L ++ I + E L + + + ++ D + + P + G + Sbjct: 373 QKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEHLNYIDINPYYEKLTGFS 432 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + + F + + + G +F + + + ++ + I Sbjct: 433 KSELLNKELFSITINQKELQQQFHSSITQQLLE-TGEYMGQFDEKFSSGKSVYLWLHINV 491 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + I YIG A D++EQK+ + + D+LT +PNR + ++L L + + Sbjct: 492 VKDEFNQITNYIGFARDLSEQKRQEQHLSYLKNYDSLTHLPNRLYYYNQLHQYLVNPSYN 551 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++ ++ID+++ N+ L GD++L +R+ + ++A L+G+ F II Sbjct: 552 IK-NLALIRVNIDRFRAFNEFLNNDSGDELLKQFAQRLRLININAILVAYLNGDDFAIIY 610 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 I + + +++ P + +E +TASIG A + + +AE A+ Sbjct: 611 EISPIHPNIEQYCQNILQALNAPFYIDNQEYFITASIGVACFPEHGRQIDHLNNHAEQAL 670 Query: 682 YHAKHRGGNHVESFRVSS-FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK GGN + + + ++++L A++N+E + Y P I L D+ I+G EA Sbjct: 671 SEAKRLGGNTISYYCNQTTHSYKSADLEQELRKAIQNNEFVVYYQPKINLQDQSIIGFEA 730 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G + + F+ AE +I I +L+++ + + W+ Q I + +NI Sbjct: 731 LIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKSQ-GYTNIQVSVNI 789 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + L + ++ K S ++L +ES ++ N + + LL +++ IS+ L Sbjct: 790 VAQQIHRGLLLNDIDEILQKYNIQGSDLELEITESALLDNTDNVKTLLHAIKQRDISIAL 849 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DDFGT S L+YL P D +K + + ++ K+ AI+ ++I M K++ ++A+ + Sbjct: 850 DDFGTGYSSLAYLTEYPIDVLKIDRAFISKIGDHKQEAIVNAMIAMGKSMGLKLVAEGVE 909 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 E + L + CD++Q + P+ I+ L+ P+ Sbjct: 910 TEEQVAYLQKQQCDFLQGYFFSRPIPAEQIIPYLQTDSPIS 950 >gi|229491557|ref|ZP_04385378.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodococcus erythropolis SK121] gi|229321238|gb|EEN87038.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodococcus erythropolis SK121] Length = 775 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 155/758 (20%), Positives = 316/758 (41%), Gaps = 36/758 (4%) Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273 R + + L Y++ L+ V R + L + +++ Sbjct: 23 RRQIDEAAAVAPFANLAYMASLVVILTYTVP---PGRQTLRWLGGALIFLVLANSIRVWI 79 Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 RW + + + + ++ + A + L + G Sbjct: 80 PL-RWRPSKHTPRYDYVGLLVEVIVVATLDVTLFALLFHDMDVFRDLVLIATMAGIMGAG 138 Query: 334 ---YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390 + + WI I + + + I+ A+ + + + +G + Sbjct: 139 TVTFSSLRSVSLTWIYIHGLGVFTVLVVHAEPHFRIL--AIQLCIYMFALTVGAVYLSAS 196 Query: 391 LATGYFSQGIFSDGERQSLAV------LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 ++ ++ ERQ++A+ GS D +W+ D T+ +A + G+ Sbjct: 197 FQRRCLAE-FQAESERQTVALLLDGFEGGSRDWLWECDTNGRFSHTSARLAEVAGMTVDE 255 Query: 445 MHG-PIRNWLPYI----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + L + R ++D + D + W + Sbjct: 256 LQQLTFGQLLTRLQIASSPEGRAAAAQMIDKL--ESSAPFRDTVVPVHVDGRRRWWSLSG 313 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 P +G IL + G+ +DITE+ + IL A D+LTG+PNR++F L +D + Sbjct: 314 NPRVLESGAILGWRGVGSDITERYVHEQEILRLAATDSLTGLPNRRAFGVALEEAID--S 371 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + V ++D+D +K +ND LG +GD +L+ +T+R+ +++ D+ +R+ G+ FG Sbjct: 372 RAPEKQVLVGILDLDNFKSVNDTLGHPIGDQLLLEVTKRLRDVI-GSDMCSRMGGDEFG- 429 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +++ ++ + + P + I V A+IG++S + ++ A+L Sbjct: 430 LIVCTSSRDDPGVIFDRYLEVLHEPFFVEGNRIEVRATIGYSSAPEDSTDADGLVMLADL 489 Query: 680 AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 A+Y AK G N V F + + S R +L +E + L Y P + E+V Sbjct: 490 ALYEAKSTGRNRVGKFSPLLRARASARATALHELDRGIEEGQFDLHYQPQVDTQTGEVVA 549 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W+HP G I S+F+ +AEE MI + + W I + Sbjct: 550 FEALLRWNHPSRGLIGPSQFISVAEETGMIIPLGAQAMAMATAAAAGWP-----TGIGVS 604 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++ L+ E ++ ++ + P ++L +E+ V+ + R+ L +LR++G++ Sbjct: 605 VNVSPVQLVSREFGAMVKKALTDSGLPPQLLQLEITETGVVDD--RAIRDLYKLRELGVT 662 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917 + LDDFGT S + L +P D +K + L+T S + ++++++SI+ +A + +A+ Sbjct: 663 VALDDFGTGYSSFATLQRLPIDVLKIDRMLVTDSDDPKMSVVKSIVELAAALGMKSLAEG 722 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + +GCD +Q H++ L + L Sbjct: 723 VETIEQFRRVQWVGCDLVQGYHISKALTAERVDVYLAA 760 >gi|56751597|ref|YP_172298.1| hypothetical protein syc1588_d [Synechococcus elongatus PCC 6301] gi|56686556|dbj|BAD79778.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 837 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 149/793 (18%), Positives = 305/793 (38%), Gaps = 80/793 (10%) Query: 218 LIPTFAMAWVVLGYISIDF--GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275 L+ V I F + N W + +SS I+F + L Sbjct: 60 LLAAAVAQATVSALIGATGNCLFGAASWNRFFTIGWTWWTGN----ASSAILFFPVVL-- 113 Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335 W + LF +S + + ++ ++ Sbjct: 114 -LWCNQWRQSLQLSAKRWLELFIISAIILAIATLAFASKPYPVSSLVIPVFVWLALR--- 169 Query: 336 RAVLLIPAWI---LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392 W+ + FI + ++ V ++++ ++ + Sbjct: 170 ----FNSTWVSTGITFITLFAFISTANGKGQFSVLA---VNEALILLQSYNSSIAVMSFS 222 Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LASGSMHGPIR 450 + + V ++ IL S ++ + Sbjct: 223 LNAVISQARNSQTYLRQILDHLPIGVAVHELTGRMTYVNAVGREILRGKYKSATLEEMAK 282 Query: 451 NW------LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + + L + + + +R D + + P+ + Sbjct: 283 FFNIYQASKNRLTPIEELPLAMALQGQLSHTE-----DLELRWPDRT-IPLEVWGIPIHD 336 Query: 505 SNGDILRYIGIANDI-----------------------------------TEQKKSLEGI 529 G I + + DI +E++++ + Sbjct: 337 ETGHIKEGMTVFQDIHERLENARLIQQANEQLSLTVQELEAANHKLEQEASERQQAQAQL 396 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LT +PNR F+++L + D V+ +D D++K +ND LG + GD Sbjct: 397 WHLAHFDTLTQLPNRAYFVEQLHAWFNRYKADHQYPFAVLFLDCDRFKIVNDSLGHSAGD 456 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 +L + +R+ + P I ARL G+ FG+++ + D A + + I P + Sbjct: 457 VLLTQVAQRLQSCIASPVIFARLGGDEFGVLVP-AQDPGYPQDLAEQLHELIVHPFEIQG 515 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFRVSSFRSDRVM 706 + I + SIG + ++ + E+L++A+ AMY AK G + S ++S+ + Sbjct: 516 QRIYIGVSIGISFVSAQIDAAEELLRSADTAMYAAKRNPLSRGIQIFSAKLSANSLKNLA 575 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ L A++ +++ L Y PI+ L +VG EAL +W HP+ GNI EF+ +AE + Sbjct: 576 LETALREAIKQADIDLFYQPIVDLETGALVGAEALARWFHPELGNIPPLEFVTLAERSKL 635 Query: 767 IKAINLFMLERIARDIISWRDQANMPP--IFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ F+LE+ I W+ + P + +NI+++ + + + ++ ++ +T S Sbjct: 636 IFSLGNFILEKACLQIHLWQQDHLITPGDFILHVNISAQQICHEDFEDWIKDILQRTEIS 695 Query: 825 PSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 + L +ES V + + + LL L+ +G+ L++DDFGT S LSYL +P +++K Sbjct: 696 AQNLMLEITESSVAEDIDQQLLKLLDELKSMGVQLSIDDFGTGYSSLSYLQRLPVNSLKI 755 Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + + ++ I +A + ++A+ I E + L ++GCD Q + + Sbjct: 756 DRSFIHQINLAGDNRQVAQATIALAHSFGLEVVAEGIEEESQLYWLRQLGCDMGQGYYFS 815 Query: 942 SPLGFNSILKLLK 954 PL + + L+ Sbjct: 816 KPLSAADMTEFLR 828 >gi|261854660|ref|YP_003261943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halothiobacillus neapolitanus c2] gi|261835129|gb|ACX94896.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Halothiobacillus neapolitanus c2] Length = 788 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 133/562 (23%), Positives = 240/562 (42%), Gaps = 18/562 (3%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDN 463 + L V + D++ D + I LGLA G R + Sbjct: 227 QLIELLVEATHDLIVIKDPEGRWLFANLSIVHSLGLAHVVWLGKTDRELVDLASP----T 282 Query: 464 FRTILDSFVGYRRGRLQYEFRVRA------ADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 R L + ++R D + + +P+ + G I + Sbjct: 283 VRGALQFCHETDKAAWNQGQQIRHLETIPCEDGHSLIVDVIKQPVFDDKGKPRAIIVVGR 342 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+TE + E A QD LTG+ NR+ F +D+ + D + ++V D+D ++ Sbjct: 343 DVTELHTTQEQFQILASQDELTGLLNRRFFQVEAQRWIDMLSDDGSKHLALLVFDLDYFR 402 Query: 578 KINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 IND G GD +L + RR+ E + P ++AR+ G+ F I++ ++N ++ Sbjct: 403 SINDSYGHERGDQLLQEMARRLQNECVASPLLIARMGGDEFAILVETDNKPESLSALGEQ 462 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 ++ A P + + +AS G W + E+L A+ AMY AK +G N F Sbjct: 463 VKSLTARPFQIEHLTLFTSASTGIVIWPEHGRSIGELLHQADSAMYAAKEQGRNGHAVFS 522 Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS- 753 + L + + +LVY I G+EAL++W P + Sbjct: 523 PEIMEHQNRQSALLTALRQSQGDERFFLVYQVQQNASSLAITGVEALLRWQAPSPELAAG 582 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +F+ + E+ +I + ++L+ + I WR+ I + +N++S L Sbjct: 583 PDQFIPLLEKSGLIIDVGGWVLDEACQQIARWRE-YIGERITVAVNVSSIQLHSPCFIGR 641 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +QA + K+ +PS ++L +E+ ++ +P ++ L L+K+G+ L LDDFGT S LSYL Sbjct: 642 VQAALKKSGINPSLLELELTETALVNDPAKAASTLIELKKLGVQLALDDFGTGYSSLSYL 701 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 F+ +K + S + K + I+++I+ M + ++A+ + + L +G Sbjct: 702 TQFEFNRLKIDQSFVRDILVDPKDLVIVKAIVAMGHALGLEVVAEGVETVAERDLLDSLG 761 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 CD Q V P I +L Sbjct: 762 CDSFQGYLVGRPGKPEEISPML 783 >gi|146338308|ref|YP_001203356.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. ORS278] gi|146191114|emb|CAL75119.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains precursor [Bradyrhizobium sp. ORS278] Length = 903 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 131/575 (22%), Positives = 259/575 (45%), Gaps = 21/575 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILGL 440 + S + + L V ++ + + IL Sbjct: 320 FLIALFDDATERRSLSLELEKTKKFLELVVDNIPVSLIVESARDGRYLLANRSAEVILNR 379 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G + + D +R + E + D ++ R+ Sbjct: 380 KREDATGLTAA--DIFNPRE-ARLIIARDEAAIRKRSLMTEEHPISTKDGLRLFLTRRVT 436 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 M +++ + I D+T+++++ + A+ D LT +PNR +FL L+ +++ + Sbjct: 437 VMGDAD-EPQYLIKTYEDVTDRRQTESRMAHMAYHDGLTDLPNRAAFLQALSQMIE-ACR 494 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D + V+ +D+ K +NDV G A+GD +LV + RR+ + +++RLSG+ FG+I Sbjct: 495 DTDEEFAVLNVDLKGLKDVNDVFGHAIGDKLLVEVARRVHA-VSRGGVVSRLSGDEFGLI 553 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + A + ++IA+ + + I + G + + + + +L NA A Sbjct: 554 IDG-KQPEAARALAEQLAEAIAVEFQIEGKSIRTALTTGISVFPHNGSDPASLLANAGAA 612 Query: 681 MYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR----LMDEE 734 ++ AK RG + DR ++ ++L +A+++ EL L + P + E Sbjct: 613 LFRAKAKARGSITFYEPEMDQQIRDRRVLHQELSVAIKHGELSLYFQPQANSGRTVDASE 672 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I G EAL +W HP G + S+F+ +AEE +I + ++L R+ SW P+ Sbjct: 673 ITGFEALARWQHPVRGFVPPSDFIPLAEESGLIVEMGEWILREACREAASWPK-----PL 727 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ + +L + +++ +T SP R++L +E V++ + +R LL RL+ + Sbjct: 728 QVAVNLSPAQFVHGDLVALVHSILLETGLSPGRLELEITEGVLIEDFDRGVALLRRLKAL 787 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ +++DDFG+ S LSYL PFD +K + + + + AI+R++I + + + Sbjct: 788 GVRVSMDDFGSGYSSLSYLQAFPFDKIKIDRAFVMNLGRNPQSAAIIRAVIGLGHGMNMS 847 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I+A+ + + L GCD +Q + PL N Sbjct: 848 IVAEGVETPEQLGFLAEQGCDSVQGYLLGKPLPIN 882 >gi|158320976|ref|YP_001513483.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus oremlandii OhILAs] gi|158141175|gb|ABW19487.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus oremlandii OhILAs] Length = 737 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 121/440 (27%), Positives = 222/440 (50%), Gaps = 6/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E E + A+ D +T +PNR L L +D + D R ++ +D+D++K IN Sbjct: 298 ELLLEKEKVHNLAYYDGITKLPNRVYLLKILGECIDSAN-DQKNRFGILNLDLDRFKHIN 356 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD++L + RIG +LK + AR G+ F I++ ++ D A + K Sbjct: 357 DTLGHHMGDEILKLVGERIGRILKPNNFFARFGGDEFIILVKHIQEDKELIDLANQIIKE 416 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698 + P L + +T SIG + + T ++++KN+++AMY AK +GGN + S Sbjct: 417 MDQPFMLNSHRLFLTTSIGISIYPEGGETLNDLMKNSDIAMYAAKGKGGNQYYIYDKSLS 476 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + +++ L AV++ EL L Y PI+ IVG+EAL++W P G I + F+ Sbjct: 477 EKQMEALILINQLRNAVDHDELTLFYQPIMNTSTGNIVGVEALLRWYQPGHGMIGPNTFI 536 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I +I ++ + I W + + IN+++K + E + + Sbjct: 537 PLAEETDLIISIGKWVFRNVCAQIKDWIHRGYDVK-RVYINVSAKQFQEKGFLESILQAL 595 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + P I + +E+V++ + + + L+ +L+ IGIS+++DDFGT S +YL + Sbjct: 596 KEAELPPKYIGIEITETVIIQDIDHTIELIKKLKDIGISISIDDFGTGYSNFNYLKEMGV 655 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S + + K+ AI ++II +A ++ + A+ + + ++ L C IQ Sbjct: 656 DEIKIDRSFIAETTKNSKKRAITKTIILLAHQLDIAVTAEGVETKEQLEFLRESSCSKIQ 715 Query: 937 DSHVASPLGFNSILKLLKER 956 + + P+ K L Sbjct: 716 GFYYSRPVPPEEFEKFLNHH 735 >gi|329888165|ref|ZP_08266763.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] gi|328846721|gb|EGF96283.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] Length = 784 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 151/756 (19%), Positives = 297/756 (39%), Gaps = 46/756 (6%) Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272 + A+A + + ++ + + + S + + Sbjct: 43 LSRVSWLFLGAVAGGATIWCTHFVAMIAYRPGVETAYEPMLTGVSLAV-AVLGVGLALAT 101 Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332 R + G+A + F + ++ + + + Sbjct: 102 ASMRRRFSVEAGGALFGMAVAGMHFVGMAALSVEGVVHWSAVYLAVSIIGSVAFGALAFR 161 Query: 333 GYER----------AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382 A +++ L F + + LD + L L V + Sbjct: 162 LASTEERFARLKGGAAMVLGIVCLHFTAMAAMTVIPLGPLDGMLTGEDARHVLALGVAGV 221 Query: 383 GFTVIQHVLATGYF-SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 G V+ A+ + + + ER + D + + V +A + G Sbjct: 222 GLLVLGAGAASHALDREALALNRERLQYLLETGVDGM-AIERDGVIVAVNEVLAELAGAD 280 Query: 442 SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 S+ G + +W+ H D + A Q + + R Sbjct: 281 RDSLIGADLGDWVQDAHRLDDGAVTQT-----------------ILMAGGQEIPVELSAR 323 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + G + Y D+ + I A D+LTG+PNR SFL+RLT +A Sbjct: 324 RDLMARGRTMIY--AVRDLRARMAQERRIAHLARNDSLTGLPNRASFLERLTRQKQTAA- 380 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + + +D+D++K++ND+ G AVGD +L + R+ L+ + +AR G+ F Sbjct: 381 -EGESLALFALDLDRFKEVNDLYGHAVGDQLLCIIAERMKGALREGEFIARQGGDEFLA- 438 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L S + A +R+++ + L +++ ASIG + W S ++ NA+LA Sbjct: 439 LASVATRDEARAVAERLRQAVIQTVTLDHADVSCGASIGVSLWPEDAQDVSTLINNADLA 498 Query: 681 MYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK V + + R + + L A+EN L Y + + G Sbjct: 499 MYRAKASLTQDVCFYEADMDQAVRARRRVTQALREALENERFELHYQVQASVETGKATGY 558 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 E L++W + + IS ++F+ +AEE +I I ++L + R +W + P I + Sbjct: 559 EVLLRWKNDEGRYISPADFIPVAEENGLILPIGEWVLRQACRQAAAWEE-----PHRIAV 613 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ L +L + ++ +T +PSR++L +E+ ++ + R+ +L +L+ +G+++ Sbjct: 614 NLSPVQLSHVDLPRLVHQILLETGLAPSRLELEITETAMITDMARTTHVLRQLKALGVTI 673 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIA 915 +DDFGT S LS L PFD +K + S MT + AI+R+++ + +++ ++A Sbjct: 674 AMDDFGTGYSSLSTLKAFPFDKIKLDRSFMTELDGEAPQSRAIIRAVLTIGESLSIPVLA 733 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + + L GC+ +Q + P L Sbjct: 734 EGVETAEQLAFLRAQGCNEVQGYLLGRPQPEADALH 769 >gi|332993704|gb|AEF03759.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2] Length = 799 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 150/761 (19%), Positives = 305/761 (40%), Gaps = 37/761 (4%) Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287 + ++ L A S L + + YL R G Sbjct: 47 LASSATVLIVILCSFFANGLINSDFMIAWSLSLLIIAAGDVIAWYLLVKRKIENTGSKRV 106 Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA--WI 345 + + + Y M T + + ++ + ++ A L A W+ Sbjct: 107 QFLLALMLGLAAVLYAQMTTVLLGVLDTQGKIILVAILAAFIATGAWQFASLPAAALFWV 166 Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 L + + + I+ + I L+ + + ++ T + + + Sbjct: 167 LFLTLGVSVGIHISYLGEYLFISALLLIYWIYLSCVVLVTSKR---FIRGLVAETAIEHQ 223 Query: 406 RQSLAV------LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 RQ + + + D +W+ D + + +LG + G +++ + + Sbjct: 224 RQVVGLLLKDFEENASDWLWEIDSHGCLKHVSLRMQHVLGKPVHQLSGS--HFVNLLSDS 281 Query: 460 DRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + +L + + + W + +P+ NS G++ + G++ Sbjct: 282 TSAANQNVLRELATNFQQNEPFTQDNIPIEVNGDTKWWSLTAQPLINSTGNLSGWRGVST 341 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP------TVMVI 571 D+T+ + + A D+LTG+ NR F L A D P T++ + Sbjct: 342 DVTDALLREKEMTFLANIDSLTGLANRHLFAKTLHECFADDAEDGTKTPEIIKDITLITL 401 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K IND LG GD +L ++ R E+ +L+RL G+ F + + L+ Sbjct: 402 DLDNFKVINDTLGHLAGDALLKDISCRFKEITPKGVLLSRLGGDEFAWVFKNSLTPLEAT 461 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 F + + +A P E + ASIG A+ ++ + + +++A+Y AK G N Sbjct: 462 RFGQKIHELLAEPWLHQEHSFDLGASIGVANAPMDGVSPVSLQRASDMALYAAKASGKNK 521 Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + + + D + + + ++Y P IR D ++G EAL++W HP+ Sbjct: 522 LCFYDPKLDEYAMLRLALLSDFRQSFADGDFVVLYQPQIRFSDNTLIGFEALVRWHHPER 581 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G +S ++F+ + EE MI + ++L + D ++W P+ + +N++ + Sbjct: 582 GVVSPTDFIHLIEENGMIVQLGEWVLRQACSDAMNWPA-----PLQVAVNVSPVQIERTN 636 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + + T SR++L +ES +M + + + +LL LR+ G+ + LDDFGT S Sbjct: 637 LLTTVIKALKATSLPASRLELELTESSLMCDGDSTIMLLNSLREQGVRIALDDFGTGYSS 696 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--------KRIAILRSIIPMAKNIETTIIAKDIYGE 921 LSYL PFD +K + S + ++E +IL +I+ +A + A+ + + Sbjct: 697 LSYLQRFPFDKLKVDRSFVIAASENVQNVNSANAESILSAILQLANALHLQTTAEGVETQ 756 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 L ++G Q P+ + ++P ++N Sbjct: 757 DVSTLLQKLGFTNAQGFFYGRPMTAEHAENFI-SQWPDIQN 796 >gi|119470556|ref|ZP_01613259.1| putative Sensory box protein [Alteromonadales bacterium TW-7] gi|119446257|gb|EAW27534.1| putative Sensory box protein [Alteromonadales bacterium TW-7] Length = 1508 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 124/562 (22%), Positives = 249/562 (44%), Gaps = 14/562 (2%) Query: 397 SQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 + +F + R + A + D V+ D + + + T A+ + N Sbjct: 939 REMVFEEHARLFTAAFEQTRDWVFILDKNFNVRASNKSLQTAFNFAAEPISSRALNL--G 996 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + R ++ I+ E VR + + ++++I ++++ + Y+ I Sbjct: 997 MSPKSRVDYLRIMKKLSEGE--HFSCEDMVRLHNGESRHVLVKISAVADTEQRLSSYVII 1054 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI QK + + A D LTG+PNR F DR+ L+ + + ++ I+I + Sbjct: 1055 LTDIHAQKLAESELHQLANFDVLTGLPNRTLFNDRVEHALEQAQKH-LCKAALLHINIKR 1113 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K ND LG V D+++ + R+ L+ D +AR G+ F +++ + ++ Sbjct: 1114 FKYFNDSLGHEVADELIKKVAERLKCSLRSSDSIARFGGDEFVVLVEDIHQIEEVLLICT 1173 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + I++ ++ + + SIG A S +LK A +A+YHAK ++ + + Sbjct: 1174 KLMDCVNQNISINDQVVNINLSIGVAISPDDATQSGALLKAANIALYHAKGALESNYQFY 1233 Query: 696 RVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + + + ++ L A + E Y PII + G E L++W P+ I Sbjct: 1234 KQEMNQHVQKALHLESQLTKAYQEHEFCNYYQPIINAHTHQTEGFEVLLRW--PENKRIQ 1291 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 + EF L AE + +I I L R ++ WR P +++ IN+++ D EL Sbjct: 1292 TQEFSLAAEGVGLITKIMLQTFGRALNELNEWRKA--SPDLYLSINLSALDFEFIELVPE 1349 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ + I +ES++M + + + +L+++G L +DDFGT + L+YL Sbjct: 1350 IKKALINANVPSEAIVFEITESILMRDSNLALQSMKKLKELGCKLYMDDFGTGYASLTYL 1409 Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 P D +K + S + AI+ S + +A ++ +A+ + + + LT +G Sbjct: 1410 KRFPIDVLKIDRSFVQDIGIDSDDEAIIESTLTLAHSLGKECVAEGVESQQQLLFLTALG 1469 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C + Q + P+ + L+ Sbjct: 1470 CKHFQGYLFSKPVPSEDVPALI 1491 Score = 94.2 bits (233), Expect = 1e-16, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 12/190 (6%) Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF------ 401 + ++ + + +VL L F + V + + Sbjct: 764 LTGIFTKPATLKIKVKYPLWRAP--YFMVLYGALFLFFIAMWVRRRNKIQRILLAAHKES 821 Query: 402 -SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 R LA+ GS VWDW + P ++ LG ++ + +L IH + Sbjct: 822 KDSESRLKLALEGSESGVWDWQSSNPSIYQ-PRLSNELGYKHDTV--SLDEYLAKIHPQE 878 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + FR F+ +G +RVR A + W + + + G ++T Sbjct: 879 KQLFRLEWLEFLSTDKGYFNCTYRVRHAKGYWRWYKDFGKVVEWDEKTPQKVAGTYTNMT 938 Query: 521 EQKKSLEGIL 530 + E Sbjct: 939 REMVFEEHAR 948 >gi|170750649|ref|YP_001756909.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] gi|170657171|gb|ACB26226.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium radiotolerans JCM 2831] Length = 819 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 136/682 (19%), Positives = 269/682 (39%), Gaps = 35/682 (5%) Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 W + + +A + + + Sbjct: 142 WDPALAATAIAAGCGLAAAGMAIHVGRAGARARLAAATVLTLAIAVLHFLAMAAARVVPD 201 Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397 L + + + +A + ++ L ++L I LA Sbjct: 202 PALAVPQLGLARGVLAAGIAGMMAV--------ILAFAALTLMLDHLRRINVALARQG-- 251 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + + + + D +L L M H Sbjct: 252 RMLREKTLLLDATLDSMDQGLIMVDAGGVVRVCNERALALLDLPRAMMQARPSYRAVLRH 311 Query: 458 INDRDNFRTILDSFV----GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 R R S G+ Q R R + +++ +R + ++G ++ Sbjct: 312 EASRRERRRPDRSIRTWIERGEAGQTQVHERAR-PNG----LVLEVRTVPLADG---GFV 363 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 DIT++K + + A D LTG+PNR F + L L V+ +D+ Sbjct: 364 RTFTDITKRKAAEAEVARLARHDVLTGLPNRALFHETLERSLADIVQRGGA-CAVLYLDL 422 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K +ND LG GD++L + + + +ARL G+ F ++ S+ + + Sbjct: 423 DGFKSVNDSLGHQAGDELLRRVAAGLRGIAGDGA-VARLGGDEFAVL--SDGGAAEAGAL 479 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + P ++ + V S+G A + + + A+LA+Y AK G Sbjct: 480 AERLIALFDSPFSVGGHRVGVGLSVGIALAPEHGTDAEPLYRRADLALYRAKAEGRGTYR 539 Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + +R +++ DL A++++ L L Y P + +VG EAL++W HP G+ Sbjct: 540 IFTPAMDEEAEERRVLERDLRQALDDNTLGLHYQPQVDGHTGALVGFEALLRWTHPVRGS 599 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S + F+ +AEE +I A+ ++L R+ W P+ + +N++ + +L Sbjct: 600 VSPNLFVPLAEETGLIVALGDWVLREACREAAQWAQ-----PLKVAVNLSPRQFQKPDLP 654 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + A++++T SP R++L +ES+++ + R+ +L RL+ GI +++DDFGT + L+ Sbjct: 655 ETVLAILAETGLSPDRLELEVTESIIINDMARAVGILRRLKSYGIRISMDDFGTGYASLA 714 Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 L PFD +K + S + G+ + I+R+++ + +++ ++A+ + +K LT Sbjct: 715 TLQAFPFDKLKIDRSFVAQLGTGPQAAVIVRAVLSLGRSLGMGVVAEGVETHAQMKFLTE 774 Query: 930 MGCDYIQDSHVASPLGFNSILK 951 C +Q P Sbjct: 775 EACGEMQGYLFGRPRPITDYAA 796 >gi|119477173|ref|ZP_01617409.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s) [marine gamma proteobacterium HTCC2143] gi|119449536|gb|EAW30774.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s) [marine gamma proteobacterium HTCC2143] Length = 642 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 124/527 (23%), Positives = 244/527 (46%), Gaps = 17/527 (3%) Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFH 493 +LG+++ +++ D+D F + ++ + + E ++R AD Sbjct: 121 LLGISTNALYQQPLAQYFI--KEDQDKFYLFCKAIQRHKNDTISPCECELQIRRADGTQL 178 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W+ + + + I + N++T+ +++ I AF D LTG+PNR+ DRL Sbjct: 179 WVNLTGIYTQSEDNKPELQI-VLNNVTDTHNNIDEIRRLAFFDPLTGLPNRRLLFDRLAH 237 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 + SA NL VM++D+D +K +ND +G +GD +L ++ R+ ++ D LARL Sbjct: 238 AVTTSART-NLYGAVMLLDLDNFKILNDSMGHGIGDLLLQKVSLRLKMCMREDDTLARLG 296 Query: 614 GNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 G+ F I+L + ++ + + S+ NL TASIG + + Sbjct: 297 GDEFVILLENLSSDEKKAAAQAEVVTQKILVSLVEDYNLQGFVHNSTASIGIVMFKGDDL 356 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHP 726 + ++LKNA++AMY AK N F ++ L + E L Y Sbjct: 357 SFGDLLKNADVAMYQAKAASRNTFRFFDPVMQAIAERRTQLENALRQGLVQEEFVLNYQI 416 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + + G+E+L++W +P++ +S+ EF+ +AEE +I + ++LE + +W Sbjct: 417 QTN-SNGKTTGVESLVRWINPEYATVSTGEFIALAEETDIIFLLGQWVLETACAQLAAWS 475 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 M + +N+++ + ++ + K+ +P+ + L +ES+++ + + Sbjct: 476 QHPTMSSWSMSVNVSALQFKKSSFVGNVETALEKSDANPNLLILELTESMLVDDVPSTIE 535 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 + R++ +G+ +LDDFGT S L+YL +P D +K + S + AI +II Sbjct: 536 KMKRIKSLGVRFSLDDFGTGFSSLAYLKRLPLDQLKIDQSFVHDLIVGSDDAAICETIIT 595 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + ++ +IA+ + + L MGC Q + P ++ Sbjct: 596 LGISLGICVIAEGVETADQYECLMEMGCKSFQGYYFGRPTVASTFAD 642 >gi|89092612|ref|ZP_01165565.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92] gi|89083124|gb|EAR62343.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92] Length = 862 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 128/441 (29%), Positives = 228/441 (51%), Gaps = 7/441 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I E + AF D+LT +PNR +L ++ + ++ ID+D +K+ Sbjct: 425 IDGLNMQAEELRHRAFHDHLTSLPNRMHSSTQLDLMISHTIKHQ-ATAALLFIDLDHFKE 483 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG + GD++L +++R+ ++ DI+ARL G+ F +I A + Sbjct: 484 INDTLGHSTGDELLRKVSQRLRRSVREEDIVARLGGDEFTVITGVLETRSDAESIAQKLL 543 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696 + P + E++VTASIG + + S +L+NA+ AMY AK G N + Sbjct: 544 NELIRPYLIDGNELSVTASIGVSFFPEDGDNSEILLRNADSAMYEAKRNGRNGYRLYTSA 603 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ S+R + E+L A+ EL L + P + + I+G EAL++W+HP+ G I Sbjct: 604 MTEEISERFALTEELREAISREELELYFQPQVDIRTGSILGAEALLRWNHPQRGMIPPDR 663 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAE + I ++LE++ + W+++ + P I +NI+++ ++ EL E + Sbjct: 664 FIPIAESSGQMIKIGAWVLEQVCAKVAGWKERGIVAP-KIAVNISNQQ-MNRELVEQITE 721 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L++ + P+ ++L +ES +M NPE+ L L+ +G+ + +DDFGT S LSYL + Sbjct: 722 LLASSKCDPACLELEITESCLMENPEQMAHELSSLKALGVGIAIDDFGTGYSSLSYLKQL 781 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P + +K + S ++ E +AI R+I+ M +++ +IA+ I + I L ++ C Sbjct: 782 PINKLKVDRSFVSDLQDDENDLAITRAIVAMGQSMNLNVIAEGIETQEQIDLLLKLECFE 841 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q + PL L L + Sbjct: 842 GQGYFYSKPLPEEQFLAYLDQ 862 >gi|332702853|ref|ZP_08422941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio africanus str. Walvis Bay] gi|332553002|gb|EGJ50046.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Desulfovibrio africanus str. Walvis Bay] Length = 892 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 140/589 (23%), Positives = 260/589 (44%), Gaps = 18/589 (3%) Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-ERQSLAVLGSGDIVWDWDIV 424 + + G + IV + + ++ L + F ER LA D Sbjct: 313 VTASLIPGTSLSIVSMRDVSELKDALFQRDLQKAYFEQLFERVPLA-------TVLVDPQ 365 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + + G G N L + D I + E + Sbjct: 366 DRVMAVNNAFERLFGFGREESQGRSINSL-IVPPELTDEATGISRQTQDGQLVF--AESK 422 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 R AD + + I P+ GI D+TEQ ++ + ++ A D+LTG+ NR Sbjct: 423 RRTADGRTLDVSIIGTPVY-VGQRQEAVFGIYQDVTEQNRTRQQLVYQANHDHLTGLSNR 481 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + L R+ + D V+ +D++++K +ND LG GD +L+ + R + + L Sbjct: 482 RRLLTRVGDAIRRGKHVDRYDFAVLFLDLNRFKVVNDSLGHLFGDAMLIIIARMLQDSLG 541 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 ++ARL G+ FG+++ + F +++ + P ++ R++T +AS+G Sbjct: 542 DNGVVARLGGDDFGVLVEHPQVEDFVRSFVRRVQERLRTPFQVMGRQVTTSASVGVVFGR 601 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722 + + + L++A LAM AK + + F ++ L A++N E + Sbjct: 602 AEYARAEDYLRDASLAMQRAKVEANENCQVFDGRMHDHAMRRMLLESSLRTALDNQEFVM 661 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y PI+ L+ E G EALI+W+ G + EF+ +AEE +I + + LER D Sbjct: 662 HYQPIVELVSGEKRGYEALIRWNRKGEGIVPPDEFIPLAEETGLIVPMGYWALERACLDF 721 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 N + + +NI+ K D E+ +++++ +T R++L +ES++M +PE Sbjct: 722 GRLCA-PNSHELSLSVNISGKQFRDPEIYSRVKSILRQTGMPAERLRLEITESMLMQDPE 780 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT---GSTEKRIAIL 899 +L RL+ +GI +++DDFGT S LSYL P D +K + + + S+ + ++ Sbjct: 781 NVSRILSRLKNLGIKISVDDFGTGYSSLSYLSRFPIDVLKIDKAFVAPLEQSSPTAVRLV 840 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 ++II + ++ ++A+ + + LT +GC Q A P Sbjct: 841 QTIITLGNSLGLEVVAEGVESSKHVSRLTSLGCSLGQGYLFARPASLAD 889 Score = 60.7 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 8/167 (4%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 +V ++ G V + ++ E + +G V + Sbjct: 190 MVCFILQQGVEASVAVDDSQAGNESPAPSIEGSFRAIIENTGTAAMIVAADMTIVHINTE 249 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQF 492 ++ L S+ G + +W+ + H +D + + + + + YE R+ + + Sbjct: 250 FEKLVHLPRESVQGRM-SWMDFCHPDDLERTMSYHRTRLAQKSSAPSAYETRLVDSAGEV 308 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQK-KSLEGILCNAFQDNL 538 +++ + + I D++E K + L A+ + L Sbjct: 309 RHVMVTASLIPGT----SLSIVSMRDVSELKDALFQRDLQKAYFEQL 351 >gi|289648514|ref|ZP_06479857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi str. 2250] Length = 897 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 151/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGHK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFVRDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F ++L + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDN-TDQEAGQATASQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTSAGFG-NLQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILREEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ LK R+P + Sbjct: 868 DVGQGYLFDKPIPGEELIEKLK-RYPRRPSA 897 >gi|78778282|ref|YP_394597.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans DSM 1251] gi|78498822|gb|ABB45362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sulfurimonas denitrificans DSM 1251] Length = 577 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 135/555 (24%), Positives = 255/555 (45%), Gaps = 13/555 (2%) Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 ER +LA+ + + + + I G G IH Sbjct: 22 EERLNLALNFFESTNEGILIANREGLIKFVNRAFCEITGYTQEEAIGKKPNILKSGIH-- 79 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 D F + + + G + E + + + + I+ I NS Y+ + DI Sbjct: 80 DIA-FYKSMRESLE-KNGYWKGEIWDKRKNGEIYPQILSISKNKNSKFSENYYMSVFTDI 137 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 ++ KKS + + NA D+LT +PNR F L IL + +N + + IDIDK+K++ Sbjct: 138 SDIKKSEKKVYYNANYDSLTKLPNRTYFNKELEAILKEADK-ENYQVALYFIDIDKFKEV 196 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G VGD +L+++++R+ ++ D++AR+ G+ F +I + + + A ++K Sbjct: 197 NDTHGHNVGDKMLINVSKRLLNSIRENDVIARIGGDEFVLIAKNIKSEENVKQLASNLKK 256 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697 I P+ + + V SIG A + I+S E+LKNA++AMY K + + + + Sbjct: 257 KIKEPMEVDNQIFHVGLSIGVAIYPQHGISSEELLKNADIAMYEVKKSTRDGFKIYDKLM 316 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S+ + + I++D+ A+E + Y P+I + I+G EAL++W+HP+ G + F Sbjct: 317 STKIAMAISIQKDIRKALEEDMFIVYYQPVIDMHTNSIIGAEALVRWNHPQKGILEPESF 376 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + + + + I D+ + + I +NI+ L ++ C + Sbjct: 377 LQYVLSGDVGREFGCMVFSEILTDLKHINETLPKSKLQISVNISKYQLSNSTFCFDFLNI 436 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + +++L E+ +M N E + + L G ++ D+FGT S LSYL I Sbjct: 437 FERNFINADQLELEIIETEIMQNREMIKKNVEELSLCGFNIAFDNFGTGYSSLSYLRDIK 496 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + EK + I++SII + K + + A+ + + +L +GC + Sbjct: 497 VDKLKIDKSFVKNMLENEKDLNIVKSIIDIGKLFDLKVQAQGVETKEQYIKLKEIGCHFS 556 Query: 936 QDSHVASPLGFNSIL 950 Q + + PL + + Sbjct: 557 QGFYHSQPLCVDDFM 571 >gi|322417650|ref|YP_004196873.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Geobacter sp. M18] gi|320124037|gb|ADW11597.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Geobacter sp. M18] Length = 729 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 132/438 (30%), Positives = 229/438 (52%), Gaps = 7/438 (1%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 ++ + A D LT +PNR F DRL L + V+ +D+D +K IND Sbjct: 261 LRQRQAHLQQLAHYDPLTRLPNRTLFYDRLGQALFHADRAREA-VAVIFLDLDHFKDIND 319 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG GD +L+ + R+ +++ D +ARL G+ F + + N A + Sbjct: 320 TLGHRTGDLLLIEVASRLSTVVRSCDTVARLGGDEFTLFCQNVANVDNAAVVGQKLISLF 379 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699 A P L +I VTAS+G + + T E+L NA++AMYHAK G N F ++ Sbjct: 380 ATPFQLGASDIHVTASVGVTLFPNDGKTVDELLMNADIAMYHAKGCGKNVFALFDKKMNE 439 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 S+RV + DL AVE+SE L Y P + L+ ++ +EAL++W HP+ G ++ +F+ Sbjct: 440 HASERVTLLADLRQAVEHSEFLLHYQPKVDLLTGKVTSVEALVRWMHPRLGLLAPDKFIR 499 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE MI + +++ +W+D PI + +N++ ++ + + +++ Sbjct: 500 LAEESGMIVELTEWVMRTACLQARAWQDA--NLPIRVAVNLSPYHFQRQDVKQAICSVLG 557 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 T PS +++ +ES +M N E + +LG LR++GI++++DDFGT S LSYL P Sbjct: 558 ATALDPSLLEIEITESALMQNDEYTCRVLGELREMGITISVDDFGTGYSSLSYLHRFPIH 617 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 T+K + + + + + AI+ +II MAK+++ I+A+ + ++ L GC IQ Sbjct: 618 TLKIDRTFILNMMKSAEDQAIVTAIIAMAKSLKMQIVAEGVETVDQLETLKDQGCHEIQG 677 Query: 938 SHVASPLGFNSILKLLKE 955 V+ P+ S+ + + Sbjct: 678 FLVSRPVNAESVARFFTD 695 >gi|330957105|gb|EGH57365.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 897 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 151/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYSSEEVSGRK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + + ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTTSNSWQGEFKSRRKNLEPYWGQLSISKVYSDTRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE K + + I A+ DNLT + NR +F+ L A D + +++++DID + Sbjct: 453 EDITESKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F ++L + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDN-TGQEAGQTTAAE 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFGH-LQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL +DDFGT S SYL Sbjct: 748 AAILREEALDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ L +R+P + Sbjct: 868 DVGQGYLFDKPIPGEELIEKL-QRYPRRPSA 897 >gi|229130597|ref|ZP_04259553.1| Sensory box protein [Bacillus cereus BDRD-Cer4] gi|229147888|ref|ZP_04276229.1| Sensory box protein [Bacillus cereus BDRD-ST24] gi|228635538|gb|EEK92027.1| Sensory box protein [Bacillus cereus BDRD-ST24] gi|228652936|gb|EEL08818.1| Sensory box protein [Bacillus cereus BDRD-Cer4] Length = 735 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 165/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + A + T + LF ++F Sbjct: 6 TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSA 65 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351 I ASI+L I+Y K ++ ++P + +I + Sbjct: 66 EINYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125 Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 L + + + Q + ++ Q + + +R Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + + +I D + + Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++++ I + P N +++ GIA DIT + Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L IL+ + T+ N V+ +D+D++KKIND LG Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ DI+AR G+ F I+L + A + + P Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + E+++T SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E + + L + CD+IQ ++ Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKQLNLEVIAEGVETEEEWEFLHKQNCDHIQGFFISK 718 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 719 PVSSKDVWMLLHKK 732 >gi|114570741|ref|YP_757421.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10] gi|114341203|gb|ABI66483.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Maricaulis maris MCS10] Length = 809 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 171/792 (21%), Positives = 328/792 (41%), Gaps = 67/792 (8%) Query: 206 LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL 265 L V + + F + I FG L +++L I +S+ Sbjct: 50 LLFAGFVTGTGIWGTHFVSMLAYESVVPIAFGLLETVISL----------ALAIIVSACG 99 Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY-TY 324 F G + GIA + + + + A + +A+IVL Sbjct: 100 WAFAIRS-ETRFAAPIGGALVGGGIAAMHFMGIEAMRTNAIFTWDAGLIIAAIVLAIQFS 158 Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-----------NDIIQPALVG 373 G LI +L+ + L + + L Sbjct: 159 AAASTVAMGKSLKPSLIGGTLLLVCGVVSLHFISMGAMQLVPDMTVAEPEGGLSPKLLAV 218 Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTP 432 + L V+ + + + + ++G R + + + + ++ Sbjct: 219 TVALGVVFVVSVGLATAAIDLHLGKRRMAEGARMRALAEATFEGIAV--VRDGQMYDMNG 276 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 +L LA + G L + D + + R+R D Sbjct: 277 RFCEMLNLAREDLVGTPIMKLA-VDPEDI--------RVLQLDQDDAPTTCRLRCRDRAP 327 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 + +R R + + +G R D++ ++++ I A D LTG+PNR F + L Sbjct: 328 ITVQVRAR-VMDFDGQSSRIF-TFRDVSSEERARARITHLAHHDTLTGLPNRLKFREALE 385 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 L + D++ + +M D+D++K++NDV G A GD +LV+++ R+ + L + ARL Sbjct: 386 AELSSAW-DNDSQVALMFFDLDRFKEVNDVHGHATGDRLLVAVSERLLDALPRNAVAARL 444 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 SG+ F +IL ++ + A + ++ P+++ + V+AS G + Sbjct: 445 SGDEFAVILPDVDSREDGLNTARRVVNNVGSPLSIGSLHLKVSASGGVTMFPLDGEDPDR 504 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 ++ A+LA+Y AK +G N V F +R M++ DL LA+E+ L L Y P +RL Sbjct: 505 LMNQADLALYRAKGQGRNQVCDFDPKLGMMMQERRMLEADLALAIEDDLLTLNYQPQVRL 564 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 D I G EAL++W + G ++ +EF+ IAEE +I + ++LE R+ ++W + Sbjct: 565 GDGSIAGFEALVRWHDDRRGAVAPAEFVQIAEETGLILKMGEWVLETACREAVNWPN--- 621 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 + +N++ L +Q ++ + P+R+++ +E V++ + R+ +L Sbjct: 622 --DRRVAVNVSPAQFKQGNLVYSVQRALTNSGLDPARLEIEITEGVLIDDEARALKVLRG 679 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908 L+ +G+ L +DDFGT S LSYL PFD +K + S +TG ++ I+R+ I +A++ Sbjct: 680 LKDLGVGLAIDDFGTGYSSLSYLRAFPFDKIKIDRSFITGLQNDQEAQIIVRATIALARD 739 Query: 909 IETTIIAKDIYGEIDIKELTRMGC--DYI-QDSHVASPLG--------------FNSILK 951 + ++ + + + EL +G D + Q ++ PL + Sbjct: 740 LNIAVVVEGVE---EFDELGALGYQPDLVLQGYLLSRPLTRGLISGFDEASKAIRAEMAT 796 Query: 952 LLKERFPLVKNT 963 L+ PL + + Sbjct: 797 LVASARPLRQRS 808 >gi|158338258|ref|YP_001519435.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] gi|158308499|gb|ABW30116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative [Acaryochloris marina MBIC11017] Length = 911 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 146/611 (23%), Positives = 279/611 (45%), Gaps = 19/611 (3%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG----IFSDGERQSLAVLG 413 IT L+ + G +L ++ ++ + E+ L + G Sbjct: 307 ITGILNAASSKRIKDGNQLLSILTTLAELMGSTFERIRLQDEAAAVLRDSEEQVRLFIDG 366 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILDSFV 472 S ++ D + A+ LG + G +H +D+ + L + Sbjct: 367 SPLLLLALDSQGMIHRVSHFGASQLGYLVDHLIGSP---FSILHPDDQTAEIQAYLQTLS 423 Query: 473 GYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 G E ++ AD W R + + G + DI++ + + + Sbjct: 424 NLEIGEIYSREAQMLQADGTLIWARQNARRVHDHRGIPQLLLA-CEDISKVRSLTDQLHF 482 Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591 A D LT +PN F L ++ +A ++ ID+D +KK+ND L A+G+++ Sbjct: 483 MAHHDALTALPNHTLFRHTLEALIAKTADQP-TPFAMLFIDLDGFKKVNDSLSHAIGNEL 541 Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651 L + +R+ + D +ARL G+ F ++L + A A A+ + + P ++ E Sbjct: 542 LCQVAQRLQGAVTSSDTVARLGGDEFVVLLPRAASPDAAAKMAQAILQQLRTPFHVQNHE 601 Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709 I + SIG + + + TSSE++K A+LAMY AK +G N+ + + ++ I+ Sbjct: 602 IFIGGSIGISLYPAQGKTSSELMKQADLAMYRAKAQGRNNYQFYSAQLSATLQRKLAIEH 661 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 L A+E EL LV+ P + +I+GLEAL++W HP G + S F+ IAEE +I A Sbjct: 662 ALRTAIEKDELNLVFQPQVGPE-GQILGLEALVRWHHPTLGIVPPSTFIPIAEESHLIAA 720 Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRI 828 + ++L+ + +++ +NI++++ L L + ++ ++ S + Sbjct: 721 LTDWVLDHSLAILAPLNSAYPH--LYVAVNISAQEFLAPCTLVKRVRRALTAAKLPGSAL 778 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +ESV + E LL L+ G+ + +DDFGT S L+YL + FDT+K + + + Sbjct: 779 ELEITESVFLHPGEVPSQLLTALKNEGVRIAIDDFGTGFSSLAYLLNLSFDTLKIDRTFV 838 Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + + I++ I+ +A ++ T +A+ I + L R+GC + Q + + Sbjct: 839 SDIDIDPAKEGIMKGILTIANSLGVTFVAEGIESSSQLHCLQRLGCSHYQGYYFQAATAM 898 Query: 947 NSILKLLKERF 957 + +L L+ ++F Sbjct: 899 DQLLPLIDKKF 909 >gi|260223016|emb|CBA33156.1| Uncharacterized signaling protein PA1727 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 823 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 142/603 (23%), Positives = 262/603 (43%), Gaps = 22/603 (3%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 L+ ++ VI G + + S+ S ER + D + D+ Sbjct: 227 WVGGLLILALMAVIYAGLHAQKLMKQILEDSRQRVSLAERNRSVLNAVDDAILGIDLNGT 286 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 P + +L L S + + + L+S G R L + Sbjct: 287 VTFANPSASNLLLLTSDDILT--LEIKDLLPLEYSGPLLASLNS--GQRWSSLSST--LI 340 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 ++ + + + ++ IGI DI+E+K + + A D LTG PNR Sbjct: 341 DSNGRRFPAEVSCTVVRYNDKIRGGVIGI-RDISERKFFEDQLYLKANFDTLTGAPNRNY 399 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 F + + L + +D + ++M++DI+ +KKIND +G GD +L R+ + Sbjct: 400 FAEYVGNCLMVMGSDQS--GSLMLVDIEGFKKINDSMGHDTGDLLLKYAYERLVATVGPA 457 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 +++AR + F + L N + A+ A + + + N+L + ASIG + + + Sbjct: 458 NMVARFGNDEFAVCLGGCKNQAEAAEIAQKVLNAFSESFNVLGHVVWAGASIGISVFPTD 517 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVY 724 T +++L+ AE+AMY AK G + + R ++ DL A+ +EL L Y Sbjct: 518 GSTPNDLLRRAEMAMYKAKSLGKDEFSFYSAELDVDTQGRRTLEVDLRRALAQNELELFY 577 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 PI+ + + +EAL++W P+ G IS F+ +AEE +I + +++LE R + + Sbjct: 578 QPIVTMGSAAVSHVEALLRWRDPQKGLISPDTFIPLAEETGLIVEMGVWVLEESCRQLAA 637 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + + IN++ + + + +S+ S++ +ESV++ Sbjct: 638 WHKAGLDAHVGVAINVSGRQVPRGLSLACITETLSRYGLDGSQVSFEITESVLLDGSGTV 697 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAIL 899 L +R +GI L +DDFGT S LSYL ++ +K + S + G ++ +++ Sbjct: 698 AEWLSGVRNLGIRLMIDDFGTGYSSLSYLKHLQAAALKIDKSFVWGVAGESENKEDQSLV 757 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI------LKLL 953 +II MA ++ +IA+ + L R CD+ Q PL + L LL Sbjct: 758 LAIISMAHSLGLPVIAEGVETNEQADWLLRNQCDFAQGYLYGRPLPAENFRSSIVPLSLL 817 Query: 954 KER 956 + R Sbjct: 818 ESR 820 >gi|254560441|ref|YP_003067536.1| sensory box-containing diguanylate cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens DM4] gi|254267719|emb|CAX23566.1| putative sensory box-containing diguanylate cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens DM4] Length = 815 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 139/682 (20%), Positives = 271/682 (39%), Gaps = 19/682 (2%) Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339 + I+ + + + +AS L + Y + L Sbjct: 129 GRGYRISAGFALALGLAWATMPVVLFCSASSDERLLVVSIAAGLISDAYVVGPLLSVSYL 188 Query: 340 L-IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL-VLIVILIGFTVIQHVLATGYFS 397 IP + FI I + ++ A G+ V + + I + S Sbjct: 189 FAIPVIVGSFIGLARSGEPIALSIAVLLLVYATFVGVSVHRMSRLSRQRILDRVRVEDQS 248 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + I + D +W+ + +P +A LG + L Sbjct: 249 ETIGLLLNEFE---ENTSDWLWETNETGRFQHVSPRMADALGCPIERLQRSSFRDLLRAG 305 Query: 458 IN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + D D +L + + + W+ + +P ++ G + + G+ Sbjct: 306 EDRDEDRTTDLLSHLWQGK-AFHECLVAIETPTG-LRWLALSGKPFTDQRGTLAGFRGVG 363 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +D+T+++++ I A +D LTG+ NR F D S R ++ +D+D + Sbjct: 364 SDVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEACTASMR-GGPRVHLLYLDLDGF 422 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 KK+ND G GDD+L + R+ + + RL G+ F I+ ++ A A Sbjct: 423 KKVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAE-AEILAEA 481 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + S+ P + + + SIG A ++++ A+LA+Y AK G + F Sbjct: 482 VIASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCFE 541 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + + N E+ L Y P++ L D E+VG EAL++W P G +S Sbjct: 542 ADLERRVQRWRELDSAMRAGLTNGEMELHYQPLVSLQDGEVVGCEALLRWTRPGLGPVSP 601 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +E + IAE + I + L + ++W P+ + +NI+S + + + Sbjct: 602 AELIPIAESTGFVITIGRWALRTACAEALTWP-----VPMRVAVNISSTHFRLPDFFQEV 656 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +A + T +P R+++ +ES+ + N L LR G+ + LDDFGT S LSYL Sbjct: 657 EAALDATGLAPERLEIEITESIFLANTPHVLENLQALRAKGVRIALDDFGTGYSSLSYLT 716 Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + + + + + +A++++I+ +A ++ + + + E + L C Sbjct: 717 QYPVDKIKIDRAFVRDLSSRPECLAVIKAIMVIAGDLRIDVTVEGVETEQQAELLRLRRC 776 Query: 933 DYIQDSHVASPLGFNSILKLLK 954 + Q + + L++ Sbjct: 777 NSAQGFLYSPARPSGEVTGLIE 798 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] gi|151283116|gb|ABR91526.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 135/633 (21%), Positives = 283/633 (44%), Gaps = 28/633 (4%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A + + I + + + + + + + + L + Sbjct: 288 ASSSLNGYPFFAIVGMSQDSVLARYTVHRDTIRNAAIAITTFLFVFAVIAVVMSLRLAWK 347 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---------VTTTPDIATILGLASGSMHG 447 S + + +A + + W ++DR + AT G + + Sbjct: 348 SHRLDAVRNTYRIATEFGNEGYYIWSAIQDRNGYLVDFEIIDCNERGATFFGTSKEKLLN 407 Query: 448 PIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + + +I R T++ + +G + +F ++A + + + + + Sbjct: 408 TQLSTVEFI----RGYLYTLMQQSRIAMEKGFYEDDFEMQAHNQGWIHKRM----LRCED 459 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G D++++K E + A +D LT +PNR ++ L L+ + + Sbjct: 460 G----LAVTFRDVSDRKAHEEELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQD-SL 514 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 V+ ID+D +K IND LG + GD +L + R+ +L+ D + RL G+ F ++L S Sbjct: 515 AVLFIDLDDFKNINDTLGHSSGDSLLQVVASRLESVLRPGDSVVRLGGDEFTLLLESLPL 574 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 I+ A + ++ P + ++ +T++AS+G + + + +LKNA++AMY AK Sbjct: 575 QEDISLIANRIMQTFNQPFEIQQKMLTISASMGISRYPFDGRDAETLLKNADIAMYSAKA 634 Query: 687 RGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N V + + + + + L A++ + Y P + +VG+EAL++W Sbjct: 635 DGKNKVRVYDKKLYEEIELRVDGERQLARAIQEDHFIVYYQPRVEAQTGRMVGMEALVRW 694 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G I+ F+ +AE MI + ++E++ I +W+ Q + + +N++++ Sbjct: 695 AHPERGLIAPDHFIPLAESTGMILPLGRLVMEKVFCQIAAWQFQKLAV-VPVSVNVSARQ 753 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + + E + + ++K P I++ +ES +MGN E+ R + + +GI + +DDFG Sbjct: 754 FDEGNVSEFIASCLNKYAVDPRFIEIELTESAMMGNFEQVRGEISSISALGIQIHVDDFG 813 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LS L D +K + + + + SI+ MAK ++ ++A+ + Sbjct: 814 TGYSSLSLLYKFNMDVLKVDRAFTSQICNGKGGEIFFSSIVSMAKVLKMRVVAEGVETIE 873 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ L ++GCD IQ V+ P+ + + +LL + Sbjct: 874 QLRVLQQLGCDEIQGYLVSKPIPSSDVPRLLDQ 906 >gi|159897637|ref|YP_001543884.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Herpetosiphon aurantiacus ATCC 23779] gi|159890676|gb|ABX03756.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Herpetosiphon aurantiacus ATCC 23779] Length = 596 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 151/567 (26%), Positives = 274/567 (48%), Gaps = 31/567 (5%) Query: 405 ERQSLAVLGS-GDIVWDW---------DIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 +R+ A S +W W D + +P + LG + S++G ++ Sbjct: 42 QRRRTAQRISTQLGLWHWPHSQQTVIIDQHATIIAISPLLNQQLGYPALSLNGQ--SFKH 99 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H + + F +L + R R AD + + + +L Sbjct: 100 LLHPDSSNYFEQLLHT---QTTQIHWQMLRCRHADGSWRGLEFCRHQV--GRYWLLNCRE 154 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 +T Q+ D LTG+PNRQS + +L ++ D V+ +++D Sbjct: 155 TEPVVTAQRTPPAC-------DWLTGLPNRQSLVIQLQRLIAQRQLDQQ-HFAVLFVEVD 206 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++ IND LG VGD VL ++ +R+ L D+ ARL G+ F ++L ++ + + A Sbjct: 207 RFSAINDALGYDVGDQVLQTIAQRLQSTLGPNDLAARLGGDEFVVVLGHVQHAQQALEHA 266 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 +++ + PI L ++ I T IG + + +L+ A+ AMY AK G + + Sbjct: 267 QRIQEQFSQPIVLRDKPIYTTLGIGVTL-GDGQSQAETLLREADTAMYQAKTNGISQIFL 325 Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + + +R ++ DL A+E EL L Y PI L ++VG+EAL++W HP+ G I Sbjct: 326 FDRALHAALAERWQLEIDLRGALERHELILHYQPITALPTGQMVGVEALLRWHHPQRGMI 385 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELC 811 +EF+ +AEE +I I + LE ++W+ + P + + +N++++ L L Sbjct: 386 LPNEFIHLAEESGLIVPIGFWALETACLQFLAWQADYSRPRLQVLSVNLSARQLASPALV 445 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + +I +T +P++++L +ES+V+ E +R LG ++ +G+ L +DDFGT S LS Sbjct: 446 QTLGEIIQRTGINPAQLELEITESMVIHGFELARAQLGAIKNLGVKLAIDDFGTGYSSLS 505 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL + P DT+K + S + ++ I+R+II +++ + +IA+ I + L Sbjct: 506 YLHHFPLDTLKVDRSFVNAMSDGSRNVEIVRAIIMLSQQLAMNVIAEGIETIEEAATLRD 565 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 +GCDY Q H + P+ I L + Sbjct: 566 LGCDYGQGYHFSRPMTAPDITSWLHSQ 592 >gi|89092334|ref|ZP_01165288.1| multisensor diguanylate cyclase/phophodiesterase [Oceanospirillum sp. MED92] gi|89083422|gb|EAR62640.1| multisensor diguanylate cyclase/phophodiesterase [Oceanospirillum sp. MED92] Length = 852 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 173/836 (20%), Positives = 315/836 (37%), Gaps = 89/836 (10%) Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL--SKLVNLPSGELLIWRACSEIAL 261 +F T ++ + + + L + ++ F V + L Sbjct: 9 LFSTALWLPAALASIFLLIIAQFSFLFFHTLAEFFSIIVSFVMFAFAWSTRRFIRNNFLL 68 Query: 262 SSSLIIFLFMYLHW------------NRWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309 + F L N H I + + Y P Sbjct: 69 FLACGYFWVGALDLLHTLTYRGMQLLNEHHTHDDIAIQFWIGTRYLEALILLYSPFAARQ 128 Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL----------------------- 346 R + II + I L Sbjct: 129 KVRGKPIFFLFACISLIITVLVFNDLFPRTFIDGEGLTDFKIYSEYLIDLILLAALISLF 188 Query: 347 ------------IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 + I + M + L + + L + +I + + Sbjct: 189 RCGEGIRYREKQLIAASIVMTMLAELAFTFYVSVYGLSNIVGHLFKLASYWLIFNAIVIS 248 Query: 395 YFS---QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGP-- 448 + + R + +W+ D+ + L Sbjct: 249 NIKKPYSELLASERRFRRLFENNEVALWNVDLSGVHGELENLRKRGVTNLRQHLYENREI 308 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH-------WMII---- 497 IHI D + L S R Q E +R W Sbjct: 309 APALADTIHITDINTASLELFSAETDLDPRAQSEQLMRTLPMSMFVEQLCAIWERQPNIR 368 Query: 498 RIRPMSNSNGDILRYIGIAN----------------DITEQKKSLEGILCNAFQDNLTGI 541 N + + L I DIT++K+ + I A D LTG+ Sbjct: 369 HEVVFRNVDNEELAAIVSFQIPETILEYANVPVSVVDITQRKQDEQKIWRQANFDQLTGL 428 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 NR F D L+ +DL+ + + ++ ID+D++K++ND LG ++GD +L +R+ E Sbjct: 429 ANRNYFTDSLSHTIDLAERQGD-KFALLYIDLDRFKQVNDTLGHSMGDKLLNDAAKRLKE 487 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 + DI+ARL+G+ F I+L I + S+A P +L E T++ASIG A Sbjct: 488 NSRKSDIIARLAGDEFAILLSGTGRPEVIEPLVTKLLNSLAAPYDLSGNETTISASIGIA 547 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSE 719 + +++L+ A+ AMY AK G N+ F + + +++DL A+EN E Sbjct: 548 LFPEDGCEVADLLRKADSAMYKAKEDGRNNFHFFTEEIEKEALRKRQLEQDLNRAIENQE 607 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y PI L D E++ EALI+W+HP G +S EF+ EE +I + ++L++ Sbjct: 608 FELYYQPIETL-DAEVISAEALIRWNHPLRGLVSPIEFIPFMEETSLIAPLGEWILKQAC 666 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 +D + W ++PP + +NI+++ + + ++ +++ T S R+ L +ES+++ Sbjct: 667 QDAMHWDHHCSVPP-KVSVNISTRQFQNQNMPALVKQILTDTGLSADRLTLEITESLMID 725 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897 + + + L LR +G++L++DDFGT S LSYL P +K + S + G ++ A Sbjct: 726 DEDSTIHQLNSLRLMGVALSVDDFGTGYSSLSYLKKFPVSYLKIDRSFIQGLPNCQEDSA 785 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ +I+ MA+++ ++A+ + L + C YIQ ++ P+ + L Sbjct: 786 LVEAILSMAESLRLQVVAEGVETSSQANYLASLKCRYIQGYWLSKPIPQHDFCNYL 841 >gi|229051019|ref|ZP_04194567.1| Sensory box protein [Bacillus cereus AH676] gi|228722328|gb|EEL73725.1| Sensory box protein [Bacillus cereus AH676] Length = 735 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 165/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%) Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +LI ++ + ++I + + A + T + LF ++F Sbjct: 6 TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSA 65 Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351 I ASI+L I+Y K ++ ++P + +I + Sbjct: 66 EINYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125 Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 L + + + Q + ++ Q + + +R Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 D V+ ++ + ++ + + + +I D + + Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 L R L E R + + ++++ I + P N +++ GIA DIT + Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LTG+PNR+ F L IL+ + T+ N V+ +D+D++KKIND LG Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +R+ L+ DI+AR G+ F I+L + A + + P Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704 + E+++T SIG A + +E++KNA++AMY AK G N F +++ Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ +L A++ +E +L Y P + ++I+G EALI+W HPK G +S ++F+ +AEE Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I + ++L + W +Q + + +N++ +L + ++ +T Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL P +T+K Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + G + AI+ SII ++K + +IA+ + E + + L + CD+IQ ++ Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKQLNLEVIAEGVETEEEWEFLHKQNCDHIQGFFISK 718 Query: 943 PLGFNSILKLLKER 956 P+ + LL ++ Sbjct: 719 PVSSKDVWMLLHKK 732 >gi|224368679|ref|YP_002602841.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223691395|gb|ACN14678.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 629 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 130/448 (29%), Positives = 229/448 (51%), Gaps = 15/448 (3%) Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + AF D+LTG+PNR F++ LTT LD + + + ++ ID+D +K+IND LG ++ Sbjct: 171 RLNQLAFYDSLTGLPNRTLFIENLTTTLDKAHRYKH-KAALLYIDLDNFKRINDTLGHSI 229 Query: 588 GDDVLVSLTRRIGELLKFPDIL---------ARLSGNRFGIILISENNSLKIADFAIAMR 638 GDD+L + ++R+ + L+ D + ARL G+ F +IL + A+ + Sbjct: 230 GDDLLKATSKRLLKCLRTSDTVSRSPAGEMVARLGGDEFTVILPEVTRAEHAGVVALRIA 289 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 K +A P++L ++ VT SIG + + +LKNA++AMY +K G N + S Sbjct: 290 KQLAEPLHLGNHQVIVTPSIGISLFPQDGEDIETLLKNADIAMYFSKRMGPNMFSFYEQS 349 Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ I+ L A+ E L Y P L+ E+ G EAL++W + + GN+ E Sbjct: 350 MNADALKRMTIENHLRQALGRGEFALHYQPQFDLVTGEVCGAEALLRWHNWELGNVPPIE 409 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE MI AI +++ R +W DQ I +N++ + +++ Sbjct: 410 FISIAEENGMIVAIGEWVMRTACRQTRTWLDQGLPLQ-RIAVNVSVNQFTHTDFLNMVKS 468 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P +++ +ES+++ N + +L L+K+ I + +DDFGT S +S L I Sbjct: 469 ILEETTLDPQYLEIEITESLLVKNVPETTNILHALKKMNIRIAIDDFGTGYSSMSRLKEI 528 Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + + + G ++ +I+ +II MA+ + +IA+ + + L C Sbjct: 529 PIDCLKIDKTFVDGIAIGKRDQSIITAIIAMAEGMNLRLIAEGVETTGQVDFLRVKQCQE 588 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962 +Q + PL + ++ F L KN Sbjct: 589 VQGYLFSKPLSTQQVEVFFQKAFSLEKN 616 >gi|260462926|ref|ZP_05811130.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Mesorhizobium opportunistum WSM2075] gi|259031320|gb|EEW32592.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Mesorhizobium opportunistum WSM2075] Length = 894 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 127/441 (28%), Positives = 233/441 (52%), Gaps = 7/441 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+KK+ + I A D LTG+PNR DRL+ + + D +V+ ID+D +K IN Sbjct: 454 ERKKAEDQIHFMANHDVLTGLPNRALLQDRLSQAILHAQRYDRW-VSVVFIDLDNFKLIN 512 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639 D LG GD +L ++ R+ + D + RL G+ F ++L + N IA+ +R Sbjct: 513 DTLGHNAGDRLLKTVAERMVGCISSTDTIVRLGGDEFVLVLSDQPKNVDLIAETLQKLRT 572 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697 +IA P+ L + + TASIG A++ ++ NA+ AMY AK G ++ + + Sbjct: 573 AIAEPLQLGDHCVRATASIGIATYPKDGKAPESLVANADAAMYRAKAVGRDNFQFYAPEF 632 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 ++ +R +++E+L A+ S+ L Y P I L +IV +EALI+W+HP G ++ F Sbjct: 633 NTRAHERFLLQEELRTALARSQFELFYQPQIDLRSVQIVAVEALIRWNHPAHGAMAPVGF 692 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + AEE +I I ++L R +W+D + PI + +N++++ + L E + Sbjct: 693 IPTAEETGLIVPIGDWVLHEACRQNKAWQD-LGLEPITVSVNVSARQFSEKNLVERVVHA 751 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +S++ ++L +ES++M + + + +L+ +G+ +++DDFGT S LS L P Sbjct: 752 LSESDLEGCYLELELTESLIMQDVGLAVTTMNKLQSLGVQISIDDFGTGYSSLSALKTFP 811 Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S + + E A+ ++I + + ++ +IA+ + + + L + CD + Sbjct: 812 IARLKIDKSFIDDVATNEDDQAVASAVISLGQKLKMRVIAEGVETDEQVAFLRKNNCDEM 871 Query: 936 QDSHVASPLGFNSILKLLKER 956 Q H + P+ I +LL+ R Sbjct: 872 QGYHFSKPVCSREIERLLESR 892 Score = 53.0 bits (126), Expect = 3e-04, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 14/196 (7%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-A 441 G+ + ++ I + + D +W D + +A G Sbjct: 151 GWVSTHEDVTELIATRQIVDERISLQTLIDWVPDYLWVKDSESRFIVANRALAADSGRET 210 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + M G FR S + + + E V W+ P Sbjct: 211 TRDMIGLTD--FDLHAPELASKFRADELSVLQTGQPMIDEEEFVVDRSGAGKWLSSTKVP 268 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL----TGIPNRQSFLDRLTTILDL 557 + N D+ +GIA+DIT +K+ A L TG P D L ++ L Sbjct: 269 LRNDRNDVFGLVGIAHDITGRKREDMLRTGQAEI--LEMIATGAP----LDDVLDRLMRL 322 Query: 558 SATD-DNLRPTVMVID 572 + + +V+++D Sbjct: 323 MESQLTGILGSVLLLD 338 >gi|114778476|ref|ZP_01453320.1| hypothetical protein SPV1_10019 [Mariprofundus ferrooxydans PV-1] gi|114551201|gb|EAU53760.1| hypothetical protein SPV1_10019 [Mariprofundus ferrooxydans PV-1] Length = 1217 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 107/452 (23%), Positives = 220/452 (48%), Gaps = 5/452 (1%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 D+ IG K++ + + A D LTG+PNR DR + + + Sbjct: 757 DLAYGIGALRTRVAHKEAEDRLDFMAHHDALTGMPNRILLHDRFEQVAATARRRGS-NVA 815 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +++D + +NDVLG ++ D +LV + R+ ++ D ++R G+ F I+L + Sbjct: 816 MLFLNLDDFHLVNDVLGRSLADHMLVQVVERLHGCIRESDTISREGGDEFIILLGDVGDL 875 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 I + + + P + + ++VT+SIG + + + + ++ +E A+ AK Sbjct: 876 AAIEIIVQKILDAFSEPFTVDDHIVSVTSSIGISIFPNDGRDFNRLISQSEAALQKAKAA 935 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G + F +++ + + ++ L A+ N E + Y P I ++E ++G EAL++W Sbjct: 936 GKDTYNFFTEQMNINALEHMQLQGQLRHAIINQEFRIYYQPQIDTLNERMIGAEALVRWQ 995 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP+ G + +F+ +AE +I + ++L R WR + MP + + +N+++ Sbjct: 996 HPQHGLVPPLKFIPLAERSGLIIPLGEWVLNEACRQAQVWRKRNRMPSMVMAVNLSAVQF 1055 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + E + + ++ ++L +ES+++ + E L RL+ IGI L++DDFGT Sbjct: 1056 KRGNIVETVIQALERSGLPAENLELELTESILLDDVEVVMETLHRLKDIGIKLSIDDFGT 1115 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL + D +K + S + + AI+ +II + ++ T+IA+ + Sbjct: 1116 GYSSLSYLKRLAVDKLKIDQSFVRDMVVDPEDAAIVSAIIQLGHTLQLTVIAEGVETRAQ 1175 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ L + C+ +Q + P+ L ++ Sbjct: 1176 LQLLKSLECNEVQGYLFSRPIPAEDFSGLFEQ 1207 Score = 92.3 bits (228), Expect = 4e-16, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 2/141 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V + + + R A + W+ D++ + + + + I G+ G Sbjct: 197 MVVARDIDERRRAELELQRSELRLKEAQRVAHLGSWELDLLENSLWWSDENYRIFGVEPG 256 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 S +L +H +D+ + V R E R+ D W+ R Sbjct: 257 S-VNTYDTFLATVHPDDKVYVDRAYTASVKNRT-PYNIEHRLLLPDGLVKWVNERCETYY 314 Query: 504 NSNGDILRYIGIANDITEQKK 524 + +G LR G DITE + Sbjct: 315 HDDGTPLRSAGTTLDITESRH 335 Score = 87.3 bits (215), Expect = 1e-14, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILG 439 L + + + + I ER + + + D + + P A I G Sbjct: 321 LRSAGTTLDITESRHSADVIRLSQERFATIFRQAPLGMALIDSLNGTIHELNPRFAEIAG 380 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + M +W+ H D + R E R D W+ + I Sbjct: 381 RSVEEM--KAVDWMSITHPEDVQADLDNMALMNAGRIPGFTMEKRYFRPDRSIVWVRMTI 438 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLE 527 P+ G +++ + DITE+K++ E Sbjct: 439 APLRGEKGSSPQHLCMIEDITERKQADE 466 Score = 65.4 bits (158), Expect = 5e-08, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 66/209 (31%), Gaps = 13/209 (6%) Query: 329 HGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDI---IQPALVGGLVLIVILIG 383 ++ + +L + L +I + + L +D+ + + + ++ + +G Sbjct: 12 GWVQHHFFVLLGVLFAALFWIGESLLHFYFFEPGNLSHDLFPTVYHEMWMRMFIVCMFLG 71 Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILG-LA 441 F + I E+ + S + + V A + G Sbjct: 72 FGFFTQRIDDARMRAEIRRGEEQFKALMDVSPEAIAVH--QGGLWVYANDAAAKLFGGKQ 129 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G R + ++H +D + + + E R+ + Sbjct: 130 PEDIIG--RQVMEFVHPDDHIVVQERMRQLFEGEALTPKLEERLLQPGGTSILAEVYA-L 186 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 + +G + +A DI E++++ + Sbjct: 187 RTEFDGKPAVMV-VARDIDERRRAELELQ 214 Score = 59.6 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 10/157 (6%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA- 441 +I+ + + + + + + V+ D + A GL Sbjct: 451 HLCMIEDITERKQADEALRESKDLLRSIIEHAPIRVFWKDAQSRYLGCNSAFAHDAGLTQ 510 Query: 442 SGSMHGPIR---NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G W + +RT + +L +E + + W+ Sbjct: 511 PEELVGKSDFDMGWREQ-----AELYRTDDHRVMASGEAKLGFEEPQTTPEGRHIWLRTS 565 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 P+ ++ G++ +GI DIT++K++ +L A + Sbjct: 566 KVPLRSAAGELFGLLGIYEDITQRKEAELELL-QANR 601 >gi|219850345|ref|YP_002464778.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Chloroflexus aggregans DSM 9485] gi|219544604|gb|ACL26342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Chloroflexus aggregans DSM 9485] Length = 1101 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 218/443 (49%), Gaps = 10/443 (2%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I + + D LTG+PNR +R+ L + ++ ++ ID+D +K+ Sbjct: 650 IADHANLNAQLNYQVRYDTLTGLPNRNLLQERIDLALRDARERRHI-VALLFIDLDGFKQ 708 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG +GD L +++ + D L R+ G+ F +++ ++ A + Sbjct: 709 VNDSLGHPIGDRFLKHVSQAFAACARPQDTLGRMGGDEFLLLMPDLPDARLADIAAQRLL 768 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFR 696 ++ P E+ +TASIG + + + +LKNA+ AM+ AK R G Sbjct: 769 DALQTPFLHDGHELRLTASIGISLFPRDGVDVVTLLKNADSAMHRAKELKRSGFLHYRPE 828 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 S R+ ++ L A+E EL + Y P L+ E I G+EAL++W HP+ G I+ E Sbjct: 829 HSRRAHTRLALEAQLRRALERHELAVYYQPQYDLVSEGITGVEALVRWHHPQRGPIAPGE 888 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAEE +I I ++L R ++W+ P + I +N++++ LL E + A Sbjct: 889 FVPIAEESDLIIEIGSWVLREACRQAMAWQQA-GYPLLRISVNVSARQLLRPEFVAEVAA 947 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ T ++L +E V++ +P + + +LR +G+ + LDDFGT S L+YL + Sbjct: 948 VLHATGLPAQYLELEITEGVMLDDPIYAARQIDQLRHMGVRIALDDFGTGYSSLAYLRQL 1007 Query: 877 PFDTVKFNGSLMTGSTE------KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 D +K + + + E A+LR+II +A ++ ++A+ + + L M Sbjct: 1008 RLDALKIDQAFVRAIDEQQNVVTNSRALLRAIINLAHSLGLAVVAEGVETDEQRAALLSM 1067 Query: 931 GCDYIQDSHVASPLGFNSILKLL 953 GCD +Q ++ PL + + +L Sbjct: 1068 GCDVLQGYLISQPLPADEVWPML 1090 Score = 60.3 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 23/164 (14%) Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRD------RVTTTPDIATILGLASGSMHGPI 449 ER L V+ + D V D + + G A+ + G Sbjct: 380 ARKQAEERLRLLESVVVHTNDAVIILDAEPLHAPGPFIRYANAACSQLTGYATNELIGRS 439 Query: 450 RNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L +H D + ++ + R + + W+ + + P+++ G Sbjct: 440 ---LRILHGPATDSVTLNRLWEAMERQQPARFALLY--YTRAGKPIWVDLSLSPVTDEYG 494 Query: 508 DILRYIGIANDITEQKKS----LEGILCNAF---QDNLTGIPNR 544 +I + DI+ QK + + A +T + NR Sbjct: 495 KATHFIALHRDISAQKLAAFLEHDRSAILALLLQHAPVTAMLNR 538 Score = 53.0 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 4/134 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 ++ + + V D + A + + ++ G + L Sbjct: 262 EAERQLNLRARVLSQINEAVIVTDRSGAIIYLNEMAAYLYAVQPEAIIGQPLSRLFTAEP 321 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + SF + E R D + + +RI P+ + + + D Sbjct: 322 LPYQPVQPSVQSFSTG----WRGELIHRLPDGRAMMVEVRIDPLYHDELANGGALIVVRD 377 Query: 519 ITEQKKSLEGILCN 532 IT +K++ E + Sbjct: 378 ITARKQAEERLRLL 391 Score = 50.3 bits (119), Expect = 0.002, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + +IV + +P + +LG + R+ ++H++D D + L Sbjct: 26 LECIVEIVIILAPDQTIRFASPALTNLLGHPQALVVN--RSLYDFVHVDDHDRLQRHLAQ 83 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + R R++ A+ ++ +R ++ I D+T Sbjct: 84 LADSQCRRQPIRVRLQHAEGGWYIFELRC-CNRQHQPEVGGIILSGYDVTAL 134 Score = 44.6 bits (104), Expect = 0.086, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 7/148 (4%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGL-ASGSMH 446 V A + ++ R + + ++ + + P A I G+ Sbjct: 130 DVTALLAADYALRNNEFRYRQLLELAPLLIIISTLPEGIIRYCNPAGARIFGVDDPAEPV 189 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 ++ D D R + + + + A D + ++ + Sbjct: 190 NQPLT--EFLSGEDHDLMRKR-RQALRNGQLLQPARYHIYARDQIVRVIEVQGTLIEGP- 245 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534 G+I + I D+T++ ++ + A Sbjct: 246 GEIQ-VLTIGYDVTDRVEAERQLNLRAR 272 >gi|209883884|ref|YP_002287741.1| ggdef domain [Oligotropha carboxidovorans OM5] gi|209872080|gb|ACI91876.1| ggdef domain [Oligotropha carboxidovorans OM5] Length = 763 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 146/708 (20%), Positives = 293/708 (41%), Gaps = 52/708 (7%) Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSF-YYPMVTASIARITLASIVLYYTYFIIYH 329 Y+ RW + + + +A ++ ++F + +++ L Sbjct: 85 NYVETRRWEKRYILGSGAFVAILSFWCFLTFALTSDPAVHLISFSVSLAYLVG------V 138 Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI---LIGFTV 386 + + L+ GL M + NDI L L+ + I + Sbjct: 139 TGRNFSSDQLVT-----TQTVCAGLPMTAGLIIQNDIYYAFLASLLIPFFLSLRFISTRL 193 Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG--- 443 + + S+ I +R A+ + +D R + T +LGL S Sbjct: 194 RKTLFDAVVASREIQLLAKRFDTALNNMPHGLCMFDANRRLLVTNHRFIEMLGLGSNLNG 253 Query: 444 -----SMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + N L ++ + + + +R L E + Sbjct: 254 NLCIRELLQHITASNQLRHLSPD--EFASQFEERIASRQRQTLALEV------DANKTFE 305 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + +PM N ++ ++ DITE++++ E I A D LTG+PNR D + Sbjct: 306 LTFQPMENG-----GHVVLSEDITERQQTAERIEHLARYDALTGLPNRTHLEDEFERLTA 360 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 ++ ID+D++KK+ND LG GD +L + R+ +L I+AR G+ Sbjct: 361 Q----GMQSCALLFIDLDQFKKVNDTLGHPAGDALLCQVANRLRRILNTTGIVARFGGDE 416 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F ++L +++ + A A + ++++ ++ +I V AS+G T ++LK Sbjct: 417 FVVLLPIQHSRDEAAQLAGHIIRTLSEIYDVNGHQIMVGASVGVGVMPEDGRTFEQILKC 476 Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMYHAK G F + R ++ D+ A+ +E + + PI+ + Sbjct: 477 ADMAMYHAKADGRGTYSFFEHTMDEKAQTRRALELDIRNAMTRNEFDIYFQPIMDIKTGR 536 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 V EAL++W H + G + +EF+ + EE+ +I + ++L + + +W Sbjct: 537 TVTCEALLRWPHTERGMVPPNEFVSVVEEMGLITELGTWVLHKACSECTTWPKNIG---- 592 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N+++ + + E + ++ T S R+++ +ESV++ N + L +RK Sbjct: 593 -VAVNVSAIQFRRSNVSELIAECLASTGLSADRLEIEITESVLLENTAEIQKALNDIRKQ 651 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ ++LDDFGT S LSYL P +K + S + G + + +L I ++ ++ + Sbjct: 652 GVRISLDDFGTGYSSLSYLREFPLSKIKIDRSFLAGIENDPRSMKLLYGIARVSADLGMS 711 Query: 913 IIAKDIYGEIDIKELTRMG-CDYIQDSHVASPLGFNSILKLLKERFPL 959 ++ + + + L + +Q + +G K LK+ L Sbjct: 712 VVVEGVETHRQLTLLLQEPSITQVQGYLFSGAIGGVDTHKRLKDERAL 759 >gi|54297430|ref|YP_123799.1| hypothetical protein lpp1475 [Legionella pneumophila str. Paris] gi|53751215|emb|CAH12626.1| hypothetical protein lpp1475 [Legionella pneumophila str. Paris] Length = 842 Score = 479 bits (1233), Expect = e-132, Method: Composition-based stats. Identities = 149/799 (18%), Positives = 332/799 (41%), Gaps = 47/799 (5%) Query: 193 GIIIGVASLLAIFLTIFYMVN----RSSMLIPTFAMAWVVLGYISID-----------FG 237 I+ A ++ +S++++ + + F Sbjct: 54 AIVYNTALCFIALSFSIFLFLNWHYKSAIILSLAVFILSGIALVQHAYSINLGIDEIFFH 113 Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297 + N G + A + ++++LI+ + + + + C+A+LF Sbjct: 114 HYQSIQNAYPGRMAANTAFCFLLIATALILM--SFTGNQSLNNSLAGALSLLVFCLAVLF 171 Query: 298 CMSFYYPMVTASIAR--ITLASIVLYYTYFIIYHGMKGY-----------ERAVLLIPAW 344 ++ + A ++ + M Y A+ + ++ Sbjct: 172 ISGYFSDIQQAYKWGNKTPMSINTGIGFLLLSLAMMSLYWHNNTIHQLNSSIAMPYLSSF 231 Query: 345 ILIFIWFIGLWMAITKRLDNDI---IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 ++ + + + K + ++ + +L IL G + LA + + Sbjct: 232 CIMLTFSLLSFEIFKKEKELNLSTNLSLTTFALGILFSILFGLIIRLWQLAKISTATAKY 291 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHIN 459 + E + + + D + D + + + + + I+ Sbjct: 292 ALSE-VNATLESTADGILVVDRTGNVMNYNKRFLNMW-YQKERLLKTINYHDIKLMINKQ 349 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + I + Q F ++ +N ++ +P+ + +I+ + DI Sbjct: 350 LINRREAIQRINKILKNPDYQQAFELKLKNNTYY--HCYTQPLKLDD-EIIGRVWSFRDI 406 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T K+ + + D LT +PN+ ++ L + + + + V ++D+D++ +I Sbjct: 407 TIPKRLEMELSHQSTHDTLTNLPNKVLAINILGYAMKTAVSSKKI-IGVYLLDLDRFTQI 465 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 NDV G + GD+++ S+++R+ + + +L RLSG++F I++ S NNS ++ + Sbjct: 466 NDVFGHSKGDEIIKSVSKRLIDCMPMNHVLGRLSGDQF-IVIASINNSKEVVTGVTRLMS 524 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P+ + I ++ S+G + + T +L A++A+ K G N + + Sbjct: 525 AFHEPVKMNGHSIKMSCSVGISFYPKDGDTVDTLLSKADIALSRTKIEGRNSFQFYTQEM 584 Query: 700 FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 ++++ +L AV +E L Y PI++L ++G EALI+W+HP G I +F Sbjct: 585 HSYTLEHILLESELRNAVAKNEFVLYYQPILKLSTLSVIGFEALIRWNHPGKGLILPDKF 644 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE+ +I I ++ + + I +W+ Q + I INI+ K + + L Sbjct: 645 ISLAEEIGVIGEIGDWVFVTVCKQIRAWQLQGFN-NLKISINISPKQFKFRHFPQKVNEL 703 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +S+ P I+L +E++++ +L L+ +GI +++DDFGT S LSYL +P Sbjct: 704 LSEFQVKPEFIELELTENILIDKSADIIDILSELKGMGIQISIDDFGTGYSCLSYLKDLP 763 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 + +K + + + ++++II MAK+ ++IA+ I + ++ L +GC Y Sbjct: 764 INVLKIDQIFVKDLKNNQSNQTLIKAIIAMAKSFNLSLIAEGIQNKHELVFLQNLGCHYG 823 Query: 936 QDSHVASPLGFNSILKLLK 954 Q + P+ +LL+ Sbjct: 824 QGYYFYHPMPPEKCTQLLQ 842 >gi|89902652|ref|YP_525123.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] gi|89347389|gb|ABD71592.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118] Length = 853 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 134/569 (23%), Positives = 252/569 (44%), Gaps = 15/569 (2%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 ++ + + +R + + ++ D+ + + + G Sbjct: 290 RRQVADKTRHLRASEDRLATILNSVDAYIYIKDMELRYQYANRKVCELFDRPLAQVVGST 349 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGD 508 + + + R + R++ + R+ D + I+ P+ +G Sbjct: 350 DS--EFFDATTVERLRINDKRVIDN-GERVEADEVSRSLDGSREQTYLSIKLPLRQPDGS 406 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I GI+ DITE K+S + I AF D LT +PNR+ ++RL L + + Sbjct: 407 IYALCGISTDITEHKRSEDAIHQLAFYDPLTLLPNRRFLMERLQQTLKANERQQQC-GAL 465 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS----- 623 + ID+D +K +ND LG A+GD++L + R+ + D LAR + F ++L Sbjct: 466 LFIDVDNFKDLNDTLGHAMGDELLRQMAVRLSTCTRAEDTLARQGSDEFVLLLCDLSPDL 525 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A + + IA P L R T SIG A + + + E+ K A+LAMY Sbjct: 526 DAALEQTRHVAQKILQHIAEPYLLETRHYQSTVSIGIAMFGDTPTSRDELFKQADLAMYR 585 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N + F + I+ DL A+ SE L Y P + + D + G+EAL Sbjct: 586 AKAEGRNALCFFNPAMQAQVTARTAIEADLHQALARSEFVLYYQPQVNI-DGQQFGVEAL 644 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G + EF+ IAE +I + ++L R +++W I +N++ Sbjct: 645 VRWQHPQRGLVPPLEFIPIAESTGLILPLGRWILSTACRQLVAWAASPEQAHWSIAVNVS 704 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ ++ + ++ ++ T +P R++L +ES+++ + E + L+ +G+ +LD Sbjct: 705 ARQFRQSDFVQTVEQVLRDTGANPQRLELELTESLLVDDVEVVIARMSALKALGVRFSLD 764 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LS L +P D +K + S + + I+++I+ + + +IA+ + Sbjct: 765 DFGTGYSSLSMLKRLPLDQLKIDRSFVRDLRHDPQDANIVKAIVTLGFAMNLQVIAEGVE 824 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNS 948 L +GC + Q P + Sbjct: 825 TAEQRDALVNLGCTHFQGYLFGRPAPAPA 853 >gi|299530172|ref|ZP_07043598.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44] gi|298721829|gb|EFI62760.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44] Length = 829 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 120/577 (20%), Positives = 257/577 (44%), Gaps = 23/577 (3%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL------GLAS 442 + ++ + S D ++ D V P +L GLA+ Sbjct: 239 YSYRDITVESSSATELRLAARVFESSLDGIFIADANGVIVQVNPAGGQLLHGKAVLGLAA 298 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++ + + + D + ++ ++ Q + + + Sbjct: 299 WTLFESEGGPVSDL----LELAAARWDV-----GSFWEGNLWLKQSEGQRCAVWLSWVAL 349 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G +++ IG D+T Q+ + + I A+ D LTG+PNR S + + +A Sbjct: 350 RDGYGRLVQSIGFMRDMTMQRSAQKQIEQLAYSDALTGLPNRLSLSRHVQAAI-TAARFT 408 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ +D+D++K IND LG GD VL + +R+ LL+ D+L R G+ F + L Sbjct: 409 QQPFSILFLDLDRFKIINDSLGHDFGDRVLKLVAQRLSGLLRPADVLCRQGGDEFVLYLH 468 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + A + + P L +V SIG A + + +T E+++ A++AMY Sbjct: 469 DCTG-EGASAVAARILDEMRQPFMLDGLGFSVQCSIGAAQFPADGLTLDELIRQADIAMY 527 Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 K RG + ++ R+ ++ + A++ + + + P + + IV EA Sbjct: 528 RVKERGRGNFSFYQPQMSAGLLSRMKLEHAMRQALDKGHMAVHFQPQVHIRSGRIVAAEA 587 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W P+ G IS + F+ +AEE + A++ ++LE+ ++ W P+ + +N+ Sbjct: 588 LLRWTDPELGVISPAAFIPLAEESGYVVALDAWVLEQSVQEAARWLAM--DMPVKVSVNV 645 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + + + ++ ++ + ++L +ES+++ + L + ++ ++G+ L + Sbjct: 646 SALEFRQPDFVDRLKYVLEASGLPAQWLELELTESILLQEAQEMALRVHQIAELGVGLVI 705 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL +P +K + S + G AI+ +II M + + ++A+ + Sbjct: 706 DDFGTGYSSLAYLKKLPISKIKIDQSFVRGLPHDAGDKAIVGAIISMGQALGVELVAEGV 765 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + ++ DY Q + L K L++ Sbjct: 766 ETQEQCQAIEQLQGDYFQGYLCSPALPAEQFRKRLEQ 802 >gi|264677957|ref|YP_003277864.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni CNB-2] gi|262208470|gb|ACY32568.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni CNB-2] Length = 829 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 120/577 (20%), Positives = 257/577 (44%), Gaps = 23/577 (3%) Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL------GLAS 442 + ++ + S D ++ D V P +L GLA+ Sbjct: 239 YSYRDITVESSSATELRLAARVFESSLDGIFIADANGVIVQVNPAGGQLLHGKAVLGLAA 298 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++ + + + D + ++ ++ Q + + + Sbjct: 299 WTLFESEGGPVSDL----LELAAARWDV-----GSFWEGNLWLKQSEGQRCAVWLSWVAL 349 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G +++ IG D+T Q+ + + I A+ D LTG+PNR S + + +A Sbjct: 350 RDGYGRLVQSIGFMRDMTMQRSAQKQIEQLAYSDALTGLPNRLSLSRHVQAAI-TAARFT 408 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ +D+D++K IND LG GD VL + +R+ LL+ D+L R G+ F + L Sbjct: 409 QQPFSILFLDLDRFKIINDSLGHDFGDRVLKLVAQRLSGLLRPADVLCRQGGDEFVLYLH 468 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + A + + P L +V SIG A + + +T E+++ A++AMY Sbjct: 469 DCTG-EGASAVAARILDEMRQPFMLDGLGFSVQCSIGAAQFPADGLTLDELIRQADIAMY 527 Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 K RG + ++ R+ ++ + A++ + + + P + + IV EA Sbjct: 528 RVKERGRGNFSFYQPQMSAGLLSRMKLEHAMRQALDKGHMAVHFQPQVHIRSGRIVAAEA 587 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W P+ G IS + F+ +AEE + A++ ++LE+ ++ W P+ + +N+ Sbjct: 588 LLRWTDPELGVISPAAFIPLAEESGYVVALDAWVLEQSVQEAARWLAM--DMPVKVSVNV 645 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + + + ++ ++ + ++L +ES+++ + L + ++ ++G+ L + Sbjct: 646 SALEFRQPDFVDRLKYVLEASGLPAQWLELELTESILLQEAQEMALRVHQIAELGVGLVI 705 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S L+YL +P +K + S + G AI+ +II M + + ++A+ + Sbjct: 706 DDFGTGYSSLAYLKKLPISKIKIDQSFVRGLPHDAGDKAIVGAIISMGQALGVELVAEGV 765 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + ++ DY Q + L K L++ Sbjct: 766 ETQEQCQAIEQLQGDYFQGYLCSPALPAEQFRKRLEQ 802 >gi|254250789|ref|ZP_04944108.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] gi|124879923|gb|EAY67279.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] Length = 693 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 154/658 (23%), Positives = 286/658 (43%), Gaps = 17/658 (2%) Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 + ++ + A + + S+ GY+ A+ L+ I I LW+ Sbjct: 39 AARWWLVGGACVMGTGIWSMHFVGMLAFALPIPLGYDPAITLLSLLIAIVCSTGALWLVC 98 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 L + + + + + ++ G + ++AV+ SG ++ Sbjct: 99 RDTLKWRRLCGGAMLMGAGVAGMHYTGMASMRMSPGIGYDPLLVCLS-VAIAVVASGAVL 157 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W I R +L L S + G + +H R L S G R Sbjct: 158 WIVFIRR----ANSSRVRLLNLGSAVLMGAA---IAGMHYTGMAAARFPLGSICGAAGSR 210 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + + ++ +S + + + T + + + A DNL Sbjct: 211 MDAGWLALVIIVATLAILAIALIVSILDLRLEARTAVLA--TSLAAANQELTYLALHDNL 268 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 T +PNR DR+ + + + +M +D+D +K +ND G VGD +LV + RR Sbjct: 269 TKLPNRVLLEDRIDQAIQGADREHG-SFALMFMDLDGFKAVNDAYGHHVGDLLLVDVARR 327 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 IG L+ D +ARL G+ F + ++ + AD A + I P + E E+ V+ASI Sbjct: 328 IGANLRSQDTIARLGGDEFV-LAVAVDEPADAADVADKILAVIRKPFRVSEHELRVSASI 386 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVE 716 G A + + +++ NA+ AMYHAK G N F S + + + I ++L LA+E Sbjct: 387 GIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASMNANVREHLKIVQELRLALE 446 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 EL L Y P + I+G+EAL++W HP G IS +F+ IAE+ +I I ++L+ Sbjct: 447 RRELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFIPIAEKTGLIVPIGEWVLD 506 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 R + W D + +N++ L ++A + + P + L +ES Sbjct: 507 EACRQMRVWCDA-GRTDWTMAVNLSPLQFGHASLIRVVEATLQRHALEPHCLTLEITEST 565 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 M + + S +L +L +G+ +++DDFGT S L YL +P +K + + + Sbjct: 566 AMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFIRDLEHDTE 625 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 AI+ +I+ + + ++ I+A+ + + LT++GC+ +Q + P+ + +++ Sbjct: 626 DAAIISAIVALGRALDLKIVAEGVETTAQQQFLTQLGCNSLQGFLLGRPMPADHFVEM 683 >gi|92112962|ref|YP_572890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Chromohalobacter salexigens DSM 3043] gi|91796052|gb|ABE58191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Chromohalobacter salexigens DSM 3043] Length = 831 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 163/790 (20%), Positives = 328/790 (41%), Gaps = 31/790 (3%) Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248 L ++G+ F + + M + + L + G+ +++ +P Sbjct: 57 LLAGAAMMGLGVWSMHFTGMLALRLPLPMH-YDAGLTLLSLVPAMLGSGYALRIMAMPRP 115 Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWN-----RWHAKVGYITFSGIACIAILFCMSFYY 303 L + I+ R+ + ++ + + Sbjct: 116 RLSYSLVGGVVLGMGIGIMHYLGMEAIRMPVEVRYDIGLFVMSLVVAIGLGAAAMLIHRR 175 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKG-YERAVLLIPAWILIFIWFIGLWMAITKRL 362 + R+ + + + GM A +P Sbjct: 176 YARQRRLNRLDHRLVSIAACISLAISGMHYTAMSATYYLPT---------PTPAPQHAVT 226 Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + ++ G ++L++++ G V + Q + E+ + D +D Sbjct: 227 PASWLGVSVSGIVILLLMVAGLWVFIDRRLQRHQRQSVM-SREQLMEVIAAINDAFLLFD 285 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 V + +T+ G + + L + H + R +R I V + G Q E Sbjct: 286 HRGRIVLSNRTFSTLTGYTPDEIRNQPLSILEHSHESART-YRDIQRCVVEH--GHWQGE 342 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 R + + + + + + S G++ ++ +D++ +++ I A D LTG+P Sbjct: 343 IEARRKNGEAFPVRVSVNRVDYSQGNVHHFVATLHDLSAHREAQAKIHRLAHHDTLTGLP 402 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NRQ+ RL L + ++++DID +K +ND G AVGD +L+ + RR+ Sbjct: 403 NRQTLYARLD-ALQAACRAQGPGGALIMLDIDNFKALNDSRGNAVGDTLLLHVARRLKRF 461 Query: 603 LKFPDILARLSGNRFGIILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTAS 657 + LARL GN F +I+ ++ ++ +R++I +L + T T S Sbjct: 462 ARHEHDLARLGGNEFALIVTDLPSAHDDADEALSRHLDTVRQAIGGVYDLDDFTHTTTHS 521 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715 +G + +++ E++K A LAM HAK GGN +FR ++ +V ++ +L A+ Sbjct: 522 LGGVRFGDGDVSADELVKRASLAMSHAKQEGGNASRAFRPEMEQALQVRVCMEAELRQAL 581 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 +L L Y P + I+G EALI+W HP+ G IS +F+ +AEE +I+ I ++L Sbjct: 582 ATDQLQLFYQPQVDTR-GTIIGAEALIRWQHPERGMISPGDFIPLAEETGLIEQIGGWVL 640 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + + + +W + + IN++ + + + I++ R+ L +ES Sbjct: 641 DTACQQLATWSRHDATSHLQLSINVSVRQFQQADFVSRVLDTIARHRAPAERLTLELTES 700 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STE 893 +++ N E + RL++ G++ +LDDFGT S L+YL +PF+T+K + S + Sbjct: 701 LLLANVEGVIDKMTRLKQHGLNFSLDDFGTGYSSLAYLKRLPFNTLKIDVSFVRDVLVDA 760 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 AI+++I+ +A +++ +A+ + + + L R+GC Y Q + P + L Sbjct: 761 NDAAIVKTIVALADSLQLKSVAEGVEMQAQREFLERLGCHYHQGYYFGRPSPIDVFEAHL 820 Query: 954 KERFPLVKNT 963 + T Sbjct: 821 ATQASASATT 830 >gi|150017350|ref|YP_001309604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] gi|149903815|gb|ABR34648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] Length = 784 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 162/809 (20%), Positives = 324/809 (40%), Gaps = 68/809 (8%) Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 + ++ I I + + ++ F VLGY + +L Sbjct: 3 KKSKTNQIFIYICICFGLWSGGYAMML---TSDNINTAFFWRNSSVLGYCFFNGLWLYFA 59 Query: 243 VNLPSGELLIWRACSEIALSS-SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301 L + + + + + + ++F+ I A + Sbjct: 60 YLLNNEDDFEYISIIKFLAYVPTTLLFIGNI------------IVEPYSAMTKEYYGWID 107 Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361 P + I I A ++ + ++Y K ++ + I++ + +I Sbjct: 108 VAPELFPQILYIIWAIVIDFAGVIVLYLRGKYSKKNRVKKQNKIILITCTV----SIIIG 163 Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDIVWD 420 + D I P L + +L G + + + + + + + ++ Sbjct: 164 IITDFILPLLGVTIFPSAVLTGTIALGGIYYAINKHRLMLTTPKYISEYIFNTVNEPIFI 223 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 + ++ + G I + L DN L S + Sbjct: 224 LNENFIIKNCNDASLSVTNYKIEEVEGKIFSEL-------LDNVDFDLSSITKNSCAK-N 275 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK----------------- 523 E + + + DIL + + +DI+E+K Sbjct: 276 IEVNLETKYGNNITCEFSGTIIYDEYSDILGILILLHDISERKKILEMEKNCTLKLEEAN 335 Query: 524 -----------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 ++ E + + D LT +PNR+ L+ L +L++ N ++ ID Sbjct: 336 MMLKNQIQDKIRAEEKLRHFVYYDPLTELPNRKMMLENLNMLLEI----KNNSFAILFID 391 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K IND G VGD VL ++ + ++ DI++R+ G+ F II ++ + + Sbjct: 392 LDGFKSINDNYGHQVGDKVLKNVADTLKGIISNVDIISRIGGDEFVIITTDIKSTTYVKE 451 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A ++K++ +P E ++ V ASIG + + + +++ A++AMY K +GG Sbjct: 452 IAERIQKALKIPFIYNEEDLCVGASIGISIFPEHGKDADTLIRKADVAMYEVKKKGGYDY 511 Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + +++ +++ IKE L A+EN+E + Y PII L +++ EALI+W Sbjct: 512 ALYSSKINDEFLNKMNIKEKLNKAMENNEFVIYYQPIISLRSMKVLYSEALIRWKQAD-K 570 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 IS EF+ IA+ + I +I+ ++LE + W + I +N++ L +E Sbjct: 571 IISPIEFIPIAKSVGEIISIDNWVLENACKQCEIWHELGGSE-FSISVNVSYSQLKQSEF 629 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 ++ +++ + + + +E M + +L RLRKIG+ ++LDDFGT S L Sbjct: 630 IPMVENILNHYSFPARCLNMEITEDEAMEDSGTIIGILERLRKIGVRVSLDDFGTGYSSL 689 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SY+ +P D +K + SL+ + + I+RSII + ++ IIA+ I + + L Sbjct: 690 SYVNRLPIDMIKIDKSLVWNLEKDYKSVMIVRSIITLGHSLNLKIIAEGIETQEQFRILN 749 Query: 929 RMGCDYIQDSHVASPLGFNSIL-KLLKER 956 + CDYIQ + P+ + +K+ Sbjct: 750 ELNCDYIQGYLIGKPMEALEFEHRFIKKE 778 >gi|228944301|ref|ZP_04106675.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815381|gb|EEM61628.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 689 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 122/549 (22%), Positives = 248/549 (45%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ FA +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPGIHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEITEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|331268301|ref|YP_004394793.1| nitrogen fixation positive activator [Clostridium botulinum BKT015925] gi|329124851|gb|AEB74796.1| nitrogen fixation positive activator, putative [Clostridium botulinum BKT015925] Length = 597 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 129/552 (23%), Positives = 258/552 (46%), Gaps = 11/552 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 S + S + + D + +I + + + I ++ + + Sbjct: 42 FSQIIEYSKESIVVLDKDLTVLYVNNTFLSIGQYSKQEVINKK---IENISESNLNICKY 98 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I+ + +G E ++ + H++ R++ + + D YI I DIT+ K+S Sbjct: 99 IMKNIKN--KGMWTGEVEYISSLGKTHFLSARVKVIRDKMKDKKYYIAIFEDITDLKRSQ 156 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + D LTG+ + F+ +L + N V+ + +D +K +N+ +G Sbjct: 157 KSVNYLKEYDVLTGLCQKWVFIKKLKRRILEL-EGKNKLIGVITLGLDDFKFVNEAMGHV 215 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD +L +++ R+ + IL+R++G+ FGII+ + +I + + Sbjct: 216 YGDKLLKNISIRLKS-IDKTYILSRITGDEFGIIIPQCESVREIEYIVQRINEIFLKSFI 274 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 + ++E+ +TASIG + + + +++++ NA A + K G N+ + + +S Sbjct: 275 IKQQEVFITASIGISIYPIDALNANDLIMNATSAQNYVKKNGKNNYKIYSKDINKSAYNR 334 Query: 707 IK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 I+ L AV+N E L Y P L ++G+EALI+W+HP G I +F+ +AE+ Sbjct: 335 IEMIAMLRHAVDNKEFILHYQPQANLSSGNVIGVEALIRWNHPSIGLIYPDKFIPLAEKT 394 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + +++ R W D + + IN+++ + +L + ++ + K Sbjct: 395 GLIIPMGRWVISEACRQNKLWHDA-GFKDLIVSINLSALQFEEKDLVDTIKNELIKANLP 453 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P +++ +E ++M N E++ L L+ IG+ + +DDFGT S LSYL P D +K + Sbjct: 454 PKYLEIEITEGILMENTEQAIRTLCELKDIGVKIAIDDFGTGYSSLSYLKEFPIDRLKID 513 Query: 885 GSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S ++G E AI II +AK++ ++A+ I L CD IQ + + P Sbjct: 514 RSFISGIPREDNGAIANIIIELAKSLNLKVVAEGTETREHITFLKERNCDTIQGYYFSKP 573 Query: 944 LGFNSILKLLKE 955 + + ++LK+ Sbjct: 574 VSKDIFTEILKQ 585 >gi|77460773|ref|YP_350280.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1] gi|77384776|gb|ABA76289.1| conserved GGDEF/EAL domain protein [Pseudomonas fluorescens Pf0-1] Length = 624 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 127/495 (25%), Positives = 238/495 (48%), Gaps = 14/495 (2%) Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 D + ++ E R A + W + + L+ + + I + L Sbjct: 135 DQLLILKKPFDTLEIRQMANALTWKWQL--------AQDAALKMLNLEQTIEARVHELLK 186 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + D+LTG+PN DRLT L D + VM + +D++K+IN+ LG G Sbjct: 187 VSRLLQYDSLTGLPNSTLLGDRLTQSLAACRRHDK-QLVVMFLGLDRFKRINNALGHPAG 245 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D++L + +++ ++ D + R + F ++L N+ + A + +I P ++ Sbjct: 246 DEMLKRVGQQLLACVRESDSVFRYGSDEFVVMLSDINHPQQSRSIAEKLLSAIRAPQTIV 305 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706 +++VTAS+G + + + + E++K AE AM AK G N + F ++ ++ Sbjct: 306 GHDVSVTASLGISLYPDDGLEAIELIKKAETAMRSAKENGPNEIGFFIEAMNQRAREQQS 365 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 I+ + A++ E L Y P I L +VG EAL++W P G + SEF+ +AE+ + Sbjct: 366 IESGIRQALQRHEFVLHYQPKIELASGRVVGAEALVRWQKPGHGWVYPSEFIPVAEDSGL 425 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I ++ ++L R W+ PPI + +N ++ D EG++ ++++T P Sbjct: 426 IVPLSKWVLAEACRQTREWQQAGL-PPIRMSVNTSAIDFRQRHFVEGIEQVLAQTGLDPR 484 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++L +E V+M N + + L RL+ +G+ L +DDFGT S LSYL P D +K + S Sbjct: 485 LLELEITEGVLMQNVDATMSALNRLKALGVRLAIDDFGTGYSSLSYLRRFPIDVLKIDQS 544 Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + G + A++ +II + K++ +IA+ + ++ L C+ Q + + L Sbjct: 545 FIRGLSHDSSDAALVGAIISLGKSLNLNVIAEGVETAQELAFLKDHHCEEGQGYYFSKAL 604 Query: 945 GFNSILKLLKERFPL 959 ++ +LL P Sbjct: 605 PVDAFARLLASAQPG 619 >gi|326389046|ref|ZP_08210628.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor [Novosphingobium nitrogenifigens DSM 19370] gi|326206646|gb|EGD57481.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor [Novosphingobium nitrogenifigens DSM 19370] Length = 910 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 142/571 (24%), Positives = 257/571 (45%), Gaps = 29/571 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 +I+ + + + A+ + +D + V + + L G Sbjct: 343 IVIIRDMTRAREDQERLSETRAHLDTALDNMYQGLALFDASQRLVLHNDRLCELWSLQEG 402 Query: 444 SMHGP------IRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMI 496 + + + H++D RT L+S + G E R + Sbjct: 403 VLRPGMTIAEIVPVMMARAHVDDPGRTRTALESAMSPVAAGTTVIECRA------DFIVS 456 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + RP+ ++ DITE++++ I+ A D LTG+ NR F ++ +D Sbjct: 457 VATRPLVQG-----GWVSTFEDITERRRNEARIVHLAMHDPLTGLSNRAHFAEQCAREMD 511 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 SA +++ID++ +K IND G A GD +V + R+ + +ARL G+ Sbjct: 512 YSARLGQ-NFALVMIDLNGFKGINDRWGHAEGDRAIVEIGHRLQACCVESETVARLGGDE 570 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F + ++DF +R + I + AS+G A + S ++ N Sbjct: 571 FAA-GKCFASQADLSDFVDRLRACFDDDLAGEGHRIPIGASLGVAVFPSDGADLETLMNN 629 Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LAMY AK+ G H+ ++ + R + +L A+E E +LVY P + Sbjct: 630 ADLAMYRAKNGRGEHICYYQPGMDENARTRRQLATELRHAIERDEFHLVYQPQHAVQSGA 689 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 ++G EAL++W HPK G +S EF+ IAEE I AI ++L AR+ W P + Sbjct: 690 VIGYEALLRWVHPKRGLVSPDEFIPIAEETGSIYAIGEWVLREAAREAAQW-----DPDL 744 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N++ L +L + + ++ P R++L +ES ++G+ R+ LL +++ + Sbjct: 745 KIAVNLSPVQLQQADLVQTITDILVDAGLPPRRLELEITESAIIGDRTRALHLLRQIKAL 804 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETT 912 G+ + +DDFGT S L L PFD +K + S + S + AI+R+++ + +++E Sbjct: 805 GVGIAMDDFGTGYSSLDTLQAFPFDKIKIDKSFVLKAVSNHQATAIVRAVLALGRSLEIP 864 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 ++A+ + E + L R GC Q + P Sbjct: 865 VLAEGVETEEQLAMLVREGCTEAQGYYYGRP 895 Score = 77.3 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 53/379 (13%), Positives = 106/379 (27%), Gaps = 26/379 (6%) Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 D + + I A+ ++ L + A G + F + Sbjct: 2 DHHQHWLVALAAFICFATAVSGMLLFREASRSGARNWLLAAGGTAGFGIWATHFVAMMGY 61 Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM--- 299 + +W +AL+ LI F + + + + M Sbjct: 62 LPGFEVSYRLWPTVGSLALAVVLITAGFA---VALRFPTLVGAALAAAITGSGVAAMHYL 118 Query: 300 -SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI---FIWFIGLW 355 M ++ + + ++PA +L+ + Sbjct: 119 GVMAMDMPALVRFDAVYLALSVVLAIAPLIPAFHLARSERHVLPACLLLTLAVVGLHFTG 178 Query: 356 MAITKRLDND-------IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-Q 407 M + + + ++ ++ LV + + + LA QGI GER Sbjct: 179 MTAIELVPSRRAASDVILLSQQVMTWLVSVAAGLVVIICLSALAHVRRVQGIVRQGERDM 238 Query: 408 SLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 ++ V G D ++ + G A G L + + Sbjct: 239 AVIVNGISDCAMFMLTPDGIVKAWNKSAQRLNGYAEADALGLS---LERFYAGEGRPSCF 295 Query: 467 ILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + R GR E D W + I + ++ I+ +I I D+T ++ Sbjct: 296 ACKALDEARHDGRYTGEDWSLRKDGTRFWSHVTIERVIDARERIVGFIVIIRDMTRARED 355 Query: 526 LEG-ILCNAFQDNLTGIPN 543 E A D T + N Sbjct: 356 QERLSETRAHLD--TALDN 372 >gi|288959406|ref|YP_003449747.1| sensory box/GGDEF family protein [Azospirillum sp. B510] gi|288911714|dbj|BAI73203.1| sensory box/GGDEF family protein [Azospirillum sp. B510] Length = 879 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 129/592 (21%), Positives = 255/592 (43%), Gaps = 10/592 (1%) Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTT 430 G ++ +L+ V + + + ER D + D+ + Sbjct: 288 GIGALVWGLLLRRQVEHKTESLRAAVTALTASEERVRTIFDSVNDAIVIHDLDSGAILEV 347 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 + + + + L + +L E+ R D Sbjct: 348 NRRMREMYRVGEVPLSDLDVGMLSSGEPAFTAEVASEWRDKAANGEPQL-IEWHARRLDG 406 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 W + +R +G+ R + + DITE+K + E + + D LT +PNR DR Sbjct: 407 TLFWAEVSMRRAV-IDGNDRRVLVLIRDITERKAAQERMEYLSRHDALTLLPNRVLVQDR 465 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L S + L ++ +D++K +ND LG AVGD +L ++ R+ +++ D ++ Sbjct: 466 TEQALARSERNGRL-VALVACGLDRFKTVNDSLGHAVGDALLRAVAERLKAVVRDTDTIS 524 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 R G+ F ++L + + + ++ +++A P + E+TVT S G A + Sbjct: 525 RGGGDEFILLLSGRPDIDAVVETVASLHEAMAKPFLVDGHELTVTLSSGVALAPADGRDF 584 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPII 728 + +LKNA+ A++HAK G + + + + L A+E E + Y P + Sbjct: 585 ATLLKNADTALHHAKAAGRDTHRFYAEAMNAEAVAHLSTRSGLRRALERGEFLIHYQPQV 644 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 L + G EAL++W+ P+ G + F+ IAE+ +I I ++L R +WR Sbjct: 645 CLETGAVTGAEALLRWNDPERGMVPPGAFIPIAEDSGLIVPIGAWVLAEACRQAAAWRA- 703 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + + +N+++ L +L + +S + P ++L +ES+++ N + L Sbjct: 704 -GGLSLSVAVNLSALQLQRGDLVRTVTQALSGSGLDPLLLELELTESMLIQNTDVVMDNL 762 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 R++ +G+ +++DDFGT S LSY+G + D +K + S + I ++I MA Sbjct: 763 KRIKAMGVQVSIDDFGTGYSNLSYIGRLAVDKLKIDRSFVADLTHDHDSAKITAAVIQMA 822 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 ++ T +A+ + + L + CD Q + P ++ + ++ P Sbjct: 823 HSLNLTAVAEGVEDAATLAALRGLNCDIAQGYFLGRPGPAEAVERAARQVNP 874 >gi|87118350|ref|ZP_01074249.1| sensory box protein [Marinomonas sp. MED121] gi|86165984|gb|EAQ67250.1| sensory box protein [Marinomonas sp. MED121] Length = 702 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 138/585 (23%), Positives = 247/585 (42%), Gaps = 20/585 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGS 444 + + + + + S D ++ D + L Sbjct: 116 RMIAQVVDLTEHKKTAASLLMFKTLLDSSNDAIYVIDSHSSYIIECNQLGVEYLANKKEE 175 Query: 445 MHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + ++ + L D + +D + + + I I + Sbjct: 176 VIHKLKVSDLNPKMAGD-GAWPAFIDKIKKSKSIIFERTH--THIKGYDFPVEISISYIE 232 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + + DI+++K + I A D+LTG+PNR+ LDRL ++ N Sbjct: 233 FE--EKTYVLAVMRDISQRKADEKLIWQQANYDHLTGLPNRRLLLDRLEQLIHRI-HHTN 289 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + +D+D++K++ND G A GD +L + +R+ + ++ D +ARL G+ F II+ Sbjct: 290 SSLALFYLDLDRFKEVNDKFGHAKGDLLLQDVAKRLTQCVRKSDTVARLGGDEFTIIIAE 349 Query: 624 ENNSLKI-----ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 + K A A+ ++ P L ++ ++ASIG + S +L A+ Sbjct: 350 LEDEDKANKITVERIAQAILNALNRPFKLDNEQVYISASIGITFYPEDANFSDVLLNAAD 409 Query: 679 LAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMY AK +G N + F S R+ + ++L LA+E E +LVY PII L I Sbjct: 410 QAMYAAKKQGKNCFQYFSFSMQEEALSRLQLVKELHLAIEKQEFHLVYQPIIALKTGLIS 469 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 EALI+W HP G + +EF+ AEE +I I ++ +++A+ + WR P + Sbjct: 470 KAEALIRWQHPTRGLVYPNEFIPTAEETGLICEIGDWVFKQVAQQVAKWR-IKLDPNFQL 528 Query: 797 LINIASKD-LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 IN + + L N ++ + + +E ++M + L + +G Sbjct: 529 NINTSPIEYLKSNAFLGNWVEYLNAYSVPGEALAIEITERILMDSHSFIPKKLVNFQSLG 588 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913 I + LDDFG S LSY+ D +K + S + T + +I+ MA + + Sbjct: 589 IDVALDDFGMGYSSLSYIKKFDIDFLKIDRSFVKNITTSVNDKIVCEAIVAMAHKLGIKV 648 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERF 957 +A+ I E + L +GCDY Q + PL + K++KE Sbjct: 649 VAEGIETEAQRRCLKDIGCDYGQGFLFSVPLDSAAFEQKMIKEHL 693 Score = 53.0 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 3/103 (2%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + ++LG S ++ L H ++ + + I + + E + Sbjct: 37 YVNRAMLSLLGYTSDEIYDTN---LIISHPDNIEVNQCIRERLRQNPFDTVVIEKKYLHK 93 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + ++ + ++ G+I R I D+TE KK+ +L Sbjct: 94 SGRTIEGLLTLAAEADEEGNIKRMIAQVVDLTEHKKTAASLLM 136 >gi|299529805|ref|ZP_07043238.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni S44] gi|298722219|gb|EFI63143.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni S44] Length = 1046 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 127/604 (21%), Positives = 260/604 (43%), Gaps = 37/604 (6%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 ++Q + Q ++ + + D+ V + + G G Sbjct: 430 VLVQDISGRKRLEQMERLGHQQLRNLMQRLPVGLVMEDLDGRLVYWNEEFLRLAGH-GGK 488 Query: 445 MHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW-------- 494 + W + + +R+ ++ R LQ R D Q W Sbjct: 489 PGVSTQQWWERMFPDAAERERVIQRWEAAKAQARRTLQLRQSERVDDVQAQWDELATEAS 548 Query: 495 ---MIIRIRPMSNSNG-----------DILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 + + +S +G + + D +++ + + + AF D LTG Sbjct: 549 ACTVSAQTLMLSGVDGLRRPVAVSAVLQAEGCLMVLQDQSQRMAAEQEVRRLAFYDALTG 608 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR+ DRL L ++ + V+++DID +K N+ G+ GD +L S+++RI Sbjct: 609 LPNRRLLADRLQQALAVAQRKAHF-GGVVLLDIDNFKAFNETYGLDQGDLLLQSMSQRIR 667 Query: 601 ELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVT 655 LL +AR G+ F +++ + + ++ A + PI + ++T Sbjct: 668 GLLPSGATIARQGGDDFVLLIEDLGSDSVAAAARLEQQADQWLSRLREPIEIGGIPRSIT 727 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713 S+G + + ++T E+ + AE+AMY AK +G N F +R +++D+ Sbjct: 728 VSMGLSLFGEPELTGEEVQRRAEMAMYQAKSQGRNVSCFFDPQLQSALQERRTLEQDMRA 787 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 ++ E L Y P + +++G E L++W HP+ G + + F+ +AEE +I + + Sbjct: 788 GLQAGEFELFYQPQV--EMGKVIGAEGLLRWKHPEKGFVPPAHFIPLAEETGVILPLGDW 845 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +L+ + + W + + +N++ K + E + +++ R+KL + Sbjct: 846 VLQAACQQLAKWAKHPRYAQLVLSVNVSPKQFHQSGFVEQVLKALAEHGADARRLKLELT 905 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891 E +++ + + + + RL+ GI +LDDFGT S LSYL +P D +K + S + + Sbjct: 906 EGMLVSDVDDTIAKMMRLKSYGIGFSLDDFGTGYSSLSYLKRLPLDQLKIDRSFVRDVLT 965 Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 AI R+I+ +AK++ +IA+ + + + L + C Q ++ P+ + Sbjct: 966 DPNDAAIARTIVALAKSLSLHVIAEGVETQAQCRFLEGIRCYAWQGYLMSPPVPVSEFES 1025 Query: 952 LLKE 955 L+ Sbjct: 1026 LVTN 1029 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 5/144 (3%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMH 446 + +Q R + V + DI + +LG + +H Sbjct: 307 SWSRRLKFSAQARQESDARFHAMCEQAAMGVLELDIATRSVLKANQHFCQLLGYEAQEIH 366 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 R+ L + D+ + +L+ + EF +R+ + W+ + Sbjct: 367 --RRSVLELVMPEDQAHCAQLLEGLDLQQFQHNAGEFCLRSKEGAPVWVELNA--FLTGR 422 Query: 507 GDILRYIGIANDITEQKKSLEGIL 530 + R + DI+ +K+ + Sbjct: 423 HESRRLQVLVQDISGRKRLEQMER 446 >gi|209551672|ref|YP_002283589.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537428|gb|ACI57363.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 794 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 147/762 (19%), Positives = 282/762 (37%), Gaps = 39/762 (5%) Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254 ++G + + ++ L + G + F + + Sbjct: 25 LVGAMAAMLLYSRAQECDAGQRKLWIGASGFAFGTGVWATHFIAMLAYDGGTPISYALDL 84 Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL---FCMSFYYPMVTASIA 311 LS L ++ A+ + + I + Sbjct: 85 TLLSFFLSVGGSWVAI--LAASQREARFSSTRGGALMALGIASMHLTGMQAIETQAVILY 142 Query: 312 RITLASIVLYYTYFIIYHGMKGY---ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368 + + + + + L+ A ++ + L + Sbjct: 143 DSAMTLTAVVAGMLLSSAAFHLFFNLKGMRRLLSASLVFVLAICTLHFMSMGSITLVPDP 202 Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGI---FSDGERQSLAVLGSGDIVWDWDIVR 425 V LVL ++ V+ A + + S S + + Sbjct: 203 GKAVPTLVLDTRVLAAIVVVAATALILVALAVVFVQSHLTDLRGLANASQEGLLILR-EG 261 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + + G + G +D T + + R G E + Sbjct: 262 RIIDVNERFQALSGWKLADLSGKA--------PSD---VLTAIQAPRENRPG----ETLL 306 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 + + + + G + + D+TE+K++ E I A D LT +PNR Sbjct: 307 NTRTGREIAVDVNSSRIV-YRGRDCEVLAV-RDLTERKQAEEMIEHLAHHDVLTDLPNRS 364 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F R+ L ++ N + +D+D++K +ND+ G A GD +L + + + Sbjct: 365 LFDTRIRQALQVAER-KNTEVALFCLDLDRFKAVNDIFGHAEGDRILRKVAAILRRVAGE 423 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D +ARL G+ F II A + A ++ V S+G A + Sbjct: 424 SDTIARLGGDEFAIIQSDGQQPASAQKLAADIIDEFAAEMDTARDPTAVGVSLGIALYPR 483 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723 T+ E+ NA+ A+Y KH G F +R I+ DL A+ ++L++ Sbjct: 484 DGSTAEELCNNADTALYRVKHDGRGRACFFDAEMDEAARNRRQIESDLRHAIIRNQLHVS 543 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI+ EI G EAL++W P G F+ +AEE I + ++L++ R+ Sbjct: 544 YQPILNAQSVEISGYEALMRWHRPGHGLTEPDIFIPVAEESGSIVQLGEWILQQACREAA 603 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W P+ I +N++ + LCE ++A++ +T +P R++L +E+ ++ + +R Sbjct: 604 RWPQ-----PLTIAVNVSPVQFMLPNLCERVEAVLDETGLAPDRLELEITEAALIRDRDR 658 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTGSTEKRIAILRS 901 L RLRK+G+ + +DDFGT S LS L PFD +K + S + +I+R+ Sbjct: 659 VMATLQRLRKLGVHIVMDDFGTGYSSLSNLRSFPFDKIKVDRSFTGVLEHDAAARSIVRA 718 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 II + ++ ++ + + E+ + + GC +Q + P Sbjct: 719 IIGLGHSLGMPVVTEGVETEMQRRIVVEEGCAQVQGLLLGKP 760 >gi|241764595|ref|ZP_04762611.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] gi|241365958|gb|EER60584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax delafieldii 2AN] Length = 946 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 124/605 (20%), Positives = 256/605 (42%), Gaps = 14/605 (2%) Query: 362 LDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + G + G + + + + ++ ER + + D V Sbjct: 327 LPAREMVYYQAGFTTTDGAVAGTIGALVDITERRQAEEALRAEKERAEVTLASIADGVIT 386 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D T + G + G + ++ ++ + L Sbjct: 387 TDQGGRIETINEAAQFMTGYTAQQALGRALPEVFKLY--EKPLGLATSEEARPGADPLLT 444 Query: 481 ---YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + + + + P+ ++G + + + D+TE + + + +A D Sbjct: 445 PKATHQVLIHRSGERYAIEYTAAPIRQADGTVAGRVLVFRDVTETRNLRQQLSWHARHDA 504 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+ NR + RLT + + + N+ V +ID+D ++ IN+ GI VGD +L + Sbjct: 505 LTGLYNRTALAVRLTHAIFTARSQGNV-LAVCLIDLDHFQAINEQHGILVGDRLLKEVAL 563 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ + D +AR+ G+ F ++L ++ I + + +A P + + + TAS Sbjct: 564 RLTAFARPTDAVARMGGDEFALLLGELPHARAIEERLTLLLAQLAQPYAIDDLALQCTAS 623 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAV 715 +G A + +L++A+ AM AK G N + F V R + + + A+ Sbjct: 624 VGVAVFPPDNAGPDTLLRHADQAMCQAKAAGRNQMHFFDVRLDREVQTLHSQQTRIAQAL 683 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 EL L Y P + L EIVG+EAL++W HP+ G + E + ++ +I A+ + L Sbjct: 684 HAGELRLHYQPKVNLRTGEIVGMEALMRWQHPERGLLGPHEIFPLIDDTDLIVAVGEWAL 743 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSE 834 + + W + +NIA++ + ++ ++ P+R++L E Sbjct: 744 QEALAQMRVWTRAG--MGWSVSVNIAARQFHGGNFVDRLKDILHGCPEVPPARLELEILE 801 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892 S + + + R ++ + + +G+ LDDFGT S LSYL +P +T+K + S + G Sbjct: 802 SAALEDIQYMRQMMHKCQALGVRFALDDFGTGFSSLSYLKRLPAETIKIDQSFVKGILHD 861 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + ++ +I+ +A +IA+ ++L ++GC+ Q +A + + +++ Sbjct: 862 PDDLTLVGAIVALASAFHRQVIAEGAESRAHCEKLLQLGCELAQGHGIAPAMPAHEVMEW 921 Query: 953 LKERF 957 + Sbjct: 922 ARNHQ 926 >gi|264678827|ref|YP_003278734.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni CNB-2] gi|262209340|gb|ACY33438.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni CNB-2] Length = 1115 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 127/604 (21%), Positives = 259/604 (42%), Gaps = 37/604 (6%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 ++Q + Q ++ + + D+ V + + G G Sbjct: 499 VLVQDISGRKRLEQMERLGHQQLRNLMQRLPVGLVMEDLDGRLVYWNEEFLRLAGH-GGK 557 Query: 445 MHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW-------- 494 + W + + +R+ + R LQ R D Q W Sbjct: 558 PGVSTQQWWERMFPDAAERERVIQRWEVAKAQARRTLQLRQSERVDDVQAQWDELATEAS 617 Query: 495 ---MIIRIRPMSNSNG-----------DILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 + + +S +G + + D +++ + + + AF D LTG Sbjct: 618 ACTVSAQTLMLSGVDGLRRPVAVSAVLQAEGCLMVLQDQSQRMAAEQEVRRLAFYDALTG 677 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR+ DRL L ++ + V+++DID +K N+ G+ GD +L S+++RI Sbjct: 678 LPNRRLLADRLQQALAVAQRKAHF-GGVVLLDIDNFKAFNETYGLDQGDLLLQSMSQRIR 736 Query: 601 ELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVT 655 LL +AR G+ F +++ + + ++ A + PI + ++T Sbjct: 737 GLLPSGATIARQGGDDFVLLIEDLGSDSVAAAARLEQQADQWLSRLREPIEIGGIPRSIT 796 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713 S+G + + ++T E+ + AE+AMY AK +G N F +R +++D+ Sbjct: 797 VSMGLSLFGEPELTGEEVQRRAEMAMYQAKSQGRNVSCFFDPQLQSALQERRTLEQDMRA 856 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 ++ E L Y P + +++G E L++W HP+ G + + F+ +AEE +I + + Sbjct: 857 GLQAGEFELFYQPQV--EMGKVIGAEGLLRWKHPEKGFVPPAHFIPLAEETGVILPLGDW 914 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +L+ + + W + + +N++ K + E + +++ R+KL + Sbjct: 915 VLQAACQQLAKWAKHPRYAQLVLSVNVSPKQFHQSGFVEQVLKALAEHGADARRLKLELT 974 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891 E +++ + + + + RL+ GI +LDDFGT S LSYL +P D +K + S + + Sbjct: 975 EGMLVSDVDDTIAKMMRLKSYGIGFSLDDFGTGYSSLSYLKRLPLDQLKIDRSFVRDVLT 1034 Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 AI R+I+ +AK++ +IA+ + + + L + C Q ++ P+ + Sbjct: 1035 DPNDAAIARTIVALAKSLSLHVIAEGVETQAQCRFLEGIRCYAWQGYLMSPPVPVSEFES 1094 Query: 952 LLKE 955 L+ Sbjct: 1095 LVTN 1098 Score = 68.1 bits (165), Expect = 7e-09, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 5/144 (3%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMH 446 + +Q R + V + DI + +LG + +H Sbjct: 376 SWSRRLKFSAQARQESDARFHAMCEQAAMGVLELDIATRSVLKVNQHFCQLLGYEAQEIH 435 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 R+ L + D+ + +L+ + EF +R+ + W+ + Sbjct: 436 --RRSVLELVMPEDQAHCAQLLEGLDLQQFQHNAGEFCLRSKEGAPVWVELNA--FLTGR 491 Query: 507 GDILRYIGIANDITEQKKSLEGIL 530 + R + DI+ +K+ + Sbjct: 492 HESRRLQVLVQDISGRKRLEQMER 515 >gi|170740930|ref|YP_001769585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] gi|168195204|gb|ACA17151.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] Length = 793 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 124/549 (22%), Positives = 234/549 (42%), Gaps = 30/549 (5%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + E L + +W D + G AS L Sbjct: 260 VKAREESARLLFETNPLPMWVTDEAGRFLAVNDAAIGHYGYASPDFLRMSLRDL------ 313 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 V G + R R D + R + + D+ Sbjct: 314 -----------AVAGGAGSGEAPARHRRRDGSVIEVAAYSRRIPFEGRSAT--LTALVDV 360 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE++++ I A D LT +PNR F R+ L+ + D ++ +D+D++K + Sbjct: 361 TERRRAEARITHMAHHDALTDLPNRVLFRQRIVAALE-AQARDGRSAGLLCLDLDRFKLV 419 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG GD++L +R+ + +ARL G+ F ++ ++ +A + Sbjct: 420 NDTLGHPAGDELLRQAAQRLASCAQDG-SVARLGGDEFALLAPADGPEAVMATARRVIAA 478 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 P + + + V AS+G A + +L+ A++A+Y AK G +F + Sbjct: 479 LAQQPFLVAGQAVQVGASVGVALLPADGTDPDVLLRRADMALYAAKAAGRGTAVAFEPAM 538 Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + + ++ DL A+E L + Y P+ I+G EAL++W HP G + EF Sbjct: 539 DEAIQARRILEADLRAALEAGALEVHYQPLHDCRTLRILGCEALLRWRHPARGFVPPGEF 598 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+L +I + F+L R+ W P+ + +N++ L + A+ Sbjct: 599 VPLAEDLGLIGELGAFVLRAACREAAGW-----SVPLRVAVNLSPAQFRSPGLALSVTAI 653 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +++T P R+ L +E+V++ + +L LR +G+ + +DDFGT + LSYL P Sbjct: 654 LAETGLDPRRLDLEITETVLLSEDAANVAILSELRALGVRIAIDDFGTGYASLSYLRAFP 713 Query: 878 FDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 FD +K + S + G + AI+R++ + +++ + + + +++L GCD + Sbjct: 714 FDQIKIDRSFVGRLGEDPQSAAIVRAVTDLGRSLGIVTVGEGVETPRQLEQLRAFGCDVV 773 Query: 936 QDSHVASPL 944 Q + P+ Sbjct: 774 QGYLLGRPV 782 >gi|300023463|ref|YP_003756074.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans ATCC 51888] gi|299525284|gb|ADJ23753.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans ATCC 51888] Length = 625 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 137/566 (24%), Positives = 255/566 (45%), Gaps = 32/566 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIH-------- 457 LA+ + +D + + + L + G L H Sbjct: 61 LELALNNMARGLSMFDANQRLIVCNRMYEELYDLPQHLTRPGTTLAELVRNHVKRETGLD 120 Query: 458 -INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 +R R ++ V + RI ++N + ++ I Sbjct: 121 NPQERKKQRAWIERHVAALARGETFTHTQHLKSG-------RIVLVTNKPLEGGGWVDIQ 173 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE++++ + I A D LT I NR F + L L A + + ID+D + Sbjct: 174 EDITERRQAEQKIHWLARHDPLTEIANRLQFHEALDEALRNLA--PSQTLALHWIDLDGF 231 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI--SENNSLKIADFA 634 K +ND LG VGD +L S+ + + ++ DI+ARL G+ F ++ A Sbjct: 232 KTVNDTLGHPVGDALLKSVAKSLKRAVRKNDIVARLGGDEFAVLQSASRVVRKADAERMA 291 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + K I P +L ++++ +ASIG A T+ ++LK A+LA+Y AK G Sbjct: 292 QRLLKEICKPHDLGGQQVSCSASIGIAFAPLHGQTAEQLLKAADLALYKAKAGGKGIAFF 351 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + R ++ DL A++ ++L L Y P++ + +++ EAL++W HP G I Sbjct: 352 YDPDIADDANSRYELQSDLRGALDQNQLELYYQPLVDTENRDVIAFEALLRWHHPLRGMI 411 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 + ++F+ IAEE +I I + L R ++ + W D I + +N++ L + Sbjct: 412 APADFIPIAEETGLIVEIGEWALIRACQEAVKWPDT-----IRVSVNLSPIQFERGNLYQ 466 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + + + +P R++L +E V++ + +R +L LR +G + LDDFGT + LSY Sbjct: 467 AVVNALRISGLAPHRLELEITEGVLLRDEINTRAILHNLRTLGARIALDDFGTAYASLSY 526 Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI----AILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 L PFD +K + S + + AI++++ + K ++ + +A+ I + +T Sbjct: 527 LRSFPFDKIKIDRSFVRDLDVGKRKDCEAIIQAVAGLGKQMQISTVAEGIETLDQAQTVT 586 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954 GC+ +Q + + P+ + + K+L Sbjct: 587 AAGCNELQGFYFSHPVPGSDVDKVLA 612 >gi|186474063|ref|YP_001861405.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] gi|184196395|gb|ACC74359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phymatum STM815] Length = 666 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 127/540 (23%), Positives = 241/540 (44%), Gaps = 11/540 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + G+ + G W ++ + F + + Sbjct: 128 DRAGRIQRFNRLAEELTGMKEEDVIGRN-VWALFMSSEAGAASSQNISGFFQHGVA-YEV 185 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E RVR + ++ MS S D I DIT+++ + E + A D+LTG+ Sbjct: 186 ERRVRTVHGERLFLFRNKFVMSGSGVDEQFLICSGTDITKERNAQERLSELANTDSLTGL 245 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR + D+ + +A ++ +D+D +KK+ND G GD ++ ++ + E Sbjct: 246 PNRNAIHDKTRAAIASAA--PGNAVGILFLDLDNFKKVNDHYGHVFGDRLIQDVSSAVRE 303 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D LARL G+ F I+L + A + + + MP +L E+ SIG A Sbjct: 304 CLDGADTLARLGGDEF-IVLSPVATVASMEAMAQRILERLRMPFSLGLVEVYTGCSIGIA 362 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 + + +++ A+ AMY AK G F R + + + +L +E + Sbjct: 363 MFPEHGDSLEALIRAADTAMYVAKDDGKRTYRVFSPEMNRKVAEYMWLDTNLRRGLEEGQ 422 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L L Y P + L + G+EAL++W+ P+ G I + F+ AEE +I + ++++ A Sbjct: 423 LTLHYQPKLSLATGAVYGVEALVRWNSPERGQIMPAAFIRYAEESGLIGPLGRWVMQTAA 482 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 W+ + + + IN++++ L+D + + + P + + +ES ++ Sbjct: 483 EQAAQWKARG--LSLRVAINVSARQLVDTAVVSHFTEALQRAQLDPCLLDIELTESCLIE 540 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897 + + L+ + R +G + LDDFGT S LS LG IP D +K + S ++ A Sbjct: 541 DEAAAIDLITQFRDLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVSSINADSKSQA 600 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++RS++ +A+ ++ ++A+ I E + + +G +Y+Q P+ + L +R Sbjct: 601 LVRSMVAVAQALQLKVVAEGIETESEELFMKGLGVEYVQGYLYGKPMPAADFERWLHDRQ 660 >gi|218900474|ref|YP_002448885.1| sensory box/GGDEF family protein [Bacillus cereus G9842] gi|218541726|gb|ACK94120.1| sensory box/GGDEF family protein [Bacillus cereus G9842] Length = 735 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 145/562 (25%), Positives = 271/562 (48%), Gaps = 11/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R D V+ ++ + ++ + + + +I Sbjct: 178 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 235 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + L + L E R + + ++++ I + P N +++ GIA D Sbjct: 236 KDHELLKKALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 292 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT + + + AF D LTG+PNR+ F L IL+ + T+ N VM +D+D++KK Sbjct: 293 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVMFLDLDRFKK 351 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L+ + R+ L+ D++AR G+ F I+L + A + Sbjct: 352 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 411 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + E+++T SIG A + +E++KNA++AMY AK G N F Sbjct: 412 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 471 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +++ ++ +L A++ +E +L Y P + +EI+G EALI+W HPK G +S ++ Sbjct: 472 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKEIIGFEALIRWKHPKLGIVSPAQ 531 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I + ++L + W +Q + + +N++ +L + Sbjct: 532 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 590 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL Sbjct: 591 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 650 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + G + AI+ SII ++K + +IA+ + E + + L R CD+ Sbjct: 651 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 710 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ + LL ++ Sbjct: 711 IQGFFISKPVSSKDVWMLLHKK 732 >gi|212638999|ref|YP_002315519.1| GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus WK1] gi|212560479|gb|ACJ33534.1| Multidomain signal transduction protein (GGDEF and EAL domains) [Anoxybacillus flavithermus WK1] Length = 765 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 131/444 (29%), Positives = 236/444 (53%), Gaps = 7/444 (1%) Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 +E E + A D LTG+ NR++F+ +L L + + V+ ID+D++K+I Sbjct: 322 SELVHLNEQLTYVANHDFLTGLFNRRAFVMKLEEELIRAKQQQH-HFAVIFIDVDRFKQI 380 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G +GD+++V + R + E ++ D +AR G+ F II + ++ F + Sbjct: 381 NDYFGHQIGDELIVQIGRLLKETIRPTDFIARQGGDEFTIIFTPFKHVDELRRFVHRLVS 440 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 P+ + +I ++ S+G A + T ++K+A++AMY AK +G N + F Sbjct: 441 FSQQPVAVQHLDIRISLSVGVAVYPYDGETVETLMKHADIAMYRAKEQGKNQYQFFNGEM 500 Query: 700 FRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 R MI+ L A++N + L Y P + E++G+EALI+W HP+ G IS + F Sbjct: 501 DRVVLQKTMIETALHEAIDNKQFTLFYQPQFDVQTGELMGVEALIRWVHPELGTISPAMF 560 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + IAEE I AI +++E R I +W +Q + + +NI+ K L E ++A+ Sbjct: 561 IPIAEETGQIIAIGKWVIEEACRQIQTWNEQHGR-SLRMSVNISPKQFLKENFVEHIRAV 619 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T P ++ L +E V + N + + L +L+++G+ +++DDFGT S LSYL P Sbjct: 620 LQQTQLPPDQLDLEITEGVAVFNEQYTIQKLQQLKQLGVHISIDDFGTGYSSLSYLRKFP 679 Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 + +K + G TE++ A++++II +AKN++ +IA+ + + L + CD I Sbjct: 680 INRLKIAKPFIDGITEEKEDVAVVKAIIVLAKNLKLRVIAEGVETLQQLNILRSLQCDEI 739 Query: 936 QDSHVASPLGFNSILKL-LKERFP 958 Q + P+ + KL ++ + P Sbjct: 740 QGYVLGKPVPADQFAKLYIENQLP 763 >gi|89093689|ref|ZP_01166636.1| c-di-GMP phosphodiesterase A-related protein [Oceanospirillum sp. MED92] gi|89082085|gb|EAR61310.1| c-di-GMP phosphodiesterase A-related protein [Oceanospirillum sp. MED92] Length = 821 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 131/573 (22%), Positives = 255/573 (44%), Gaps = 18/573 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + +GD ++ V T L + S + G Sbjct: 241 ELSRSESFSRSLMENAGDAMFLCKSDTSIVRTNRQAELTLKIDSNKIIGRSLADFS--ES 298 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + + ++ + + R + + L + +A D Sbjct: 299 FTVAELEKRFDELSDDQVSTFE-DLQI-DSTGSAFPIEARGIKVHLE--EQLYILIMARD 354 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT +K + + + AF D LTG+ NR+ F+DRL++ L L T+ V+ +D+D++K Sbjct: 355 ITARKAAEKQVYELAFFDTLTGMANRRLFMDRLSSSLVLHQTNGKY-GAVLYMDLDRFKT 413 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADF 633 IND LG GD +L +++ RI ++ AR G+ F I+L E+ A Sbjct: 414 INDSLGHGAGDLLLKAISGRINSIIPTGATSARFGGDEFVILLPEAGIDKESCIEAAAHL 473 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + + P + + T S+G A + S ++L+ A+ A+Y K + N + Sbjct: 474 AEDIIQQFTDPFLVDSHSLYCTISVGIALFPEQNSNSGDILRRADTALYRVKAKSRNGFQ 533 Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + S + + ++ L A+E+ EL L Y P I E +G EAL++W+HP+ G Sbjct: 534 FYDPEMQSSAQERLNVEKGLHQAIEHGELELWYQPQI-GAKGECIGAEALLRWNHPERGL 592 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNEL 810 + +F+ IAE+ I I ++L + + W ++ + +N++ + + Sbjct: 593 VFPGDFIQIAEDSGQIVEIGNWVLAQGVSQLKGWMERGLPSTFRRLAVNVSPLQFMQVDF 652 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + L+ ++ ++L +E++++ N E + + L+K G+S +DDFGT S L Sbjct: 653 VDRVSTLLDESGIPGFMLELEITENMLLNNFEIASQKMKLLKKKGVSFAIDDFGTGYSSL 712 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 YL ++P D +K + S +T ++ AI++ II A ++ +IA+ + + L+ Sbjct: 713 KYLRHLPLDILKIDRSFVTDLRPHSEQAAIVQVIIATADRLDLVVIAEGVETTEECNTLS 772 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 ++GC+ Q + P+ + + ER +K Sbjct: 773 QLGCNCFQGYLFSKPVQAETFFSYVTEREQQLK 805 >gi|91975908|ref|YP_568567.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91682364|gb|ABE38666.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisB5] Length = 894 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 132/577 (22%), Positives = 256/577 (44%), Gaps = 21/577 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGL 440 + + V ++ + L V V + + IL Sbjct: 309 FIIVLFEDVTERQMLARELDKTRRFLELVVDNIPVAVTVQNASNGAYLLANRGAEVILNR 368 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G + D ++ G + E+ + + + R Sbjct: 369 RREDAIGLTSGEIFNAKE---ARLIEERDQLAIHKGGMMVEEYPISTKNG-LRLFVTRRM 424 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 +++ G+ I D+T+++++ + A+ D LT +PNR +FL L +++ Sbjct: 425 TVADEAGNTNYLIKTHADVTDRRQTEARMAHMAYHDGLTDLPNRTAFLKALAQMIEACDC 484 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + + V+ +D+D +INDV G AVGD +L+ + RRI ++ARLSG+ FG+I Sbjct: 485 TVD-QFAVLSVDLDGLAEINDVFGHAVGDKLLIEVARRIERAS-RGGVVARLSGDEFGLI 542 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + A + +++A + + + + + G A + ++ +L NA A Sbjct: 543 IDGPQ-PQAAHALAERVAEALADGLEIDGKTVRTGVTTGIALFPRDGKDAASLLANAGAA 601 Query: 681 MYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPI----IRLMDEE 734 ++ AK R V F + DR + +DL A+ N EL L Y P + + + Sbjct: 602 LFRAKARARGSVSLFAPEMDMQIRDRRALHQDLSNAIRNGELTLHYQPQAASSKSIDETD 661 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG EAL +W HP G + EF+ +AEE +I I ++L R+ SW P+ Sbjct: 662 VVGFEALARWRHPTRGFVPPGEFIPLAEESGLIVEIGEWILREACREAASWPK-----PL 716 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N++ L+++L + ++ +T P R++L +E V++ + ER LL R++ + Sbjct: 717 QIAVNLSPAQFLNSDLVGFIHQVLLETGLQPGRLELEITEGVLIEDFERGLALLRRVKAL 776 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ +++DDFG+ S L+YL PFD +K + + + + +I+R++I + + + Sbjct: 777 GVRVSMDDFGSGYSSLTYLQAFPFDKIKIDRAFIMNLGRNAQSASIVRAVIGLGHGLGVS 836 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 ++A+ + + + L GCD +Q + P + Sbjct: 837 LVAEGVETQEQLDFLVDEGCDAVQGYLIGRPAPIDQF 873 >gi|254470638|ref|ZP_05084041.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062] gi|211959780|gb|EEA94977.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062] Length = 972 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 137/570 (24%), Positives = 257/570 (45%), Gaps = 22/570 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 Q + A+ + +D + + I G Sbjct: 393 ELRKQEQELVKQNTLFDAALNNMSHGLCMFDTQKRLIVFNQRFDDIFACEQGE-GKIGMT 451 Query: 452 WLPYI--HINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 W + ++ ++ + ++ F + +++ + P Sbjct: 452 WDEMVQCMPLAQEFLEAEGENSVAQQHWPSTVRSTFTLTLQ--SEQVILMTLEPQDGG-- 507 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ I DIT++++ + + A D LT +PNR +RL + +A + + Sbjct: 508 ---GWVAIFEDITDRQRISDHLSYLATHDALTKLPNRLLMNERL-QEMKQAALEQDEHFG 563 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +D+D++K IND LG AVGD +LV + + + E + +++ARL G+ F I+ + Sbjct: 564 ILWMDLDEFKTINDSLGHAVGDKLLVHVAKILREKVTNKEMVARLGGDEFAILSKLPASR 623 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 ++ A + K +A P L EI V AS+G A ++ E+++ A+LA+Y AK+ Sbjct: 624 EQLEQLAKEVLKVVASPCFLEGHEIVVAASVGIAMFSREHQNVDELIRFADLALYQAKND 683 Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N F + + DL A N EL + + P + L EI G EAL++W+ Sbjct: 684 GRNTFRFFEDDMAAKIKQRQTLITDLYKATANRELEVYFQPQVNLATGEISGFEALLRWN 743 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP++G IS EF+ +AEE +I I ++L+ W + + + +N++ + + Sbjct: 744 HPRYGFISPFEFIPLAEETGLILEIGAWVLDEACSLAAGWPKR-----VNLAVNLSPRQI 798 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 +L + ++++T P R++L +E+V++ + R R L +L+K G+ +++DDFGT Sbjct: 799 YCEQLLPVVDDVLARTGLDPGRLELEVTETVLLADHLRVRQTLAKLQKSGVKISMDDFGT 858 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LS L PFD +K + S + E I+ S+I +A ++ A+ + + Sbjct: 859 GYSSLSTLRRFPFDRIKVDRSFVMSMSKDEDAYFIVNSVIDLANSLGIATTAEGVESKEI 918 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++L R GC Q + P N L L Sbjct: 919 AEQLKREGCTEAQGYYFGKPAPPNQALFWL 948 >gi|324999833|ref|ZP_08120945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudonocardia sp. P1] Length = 715 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 144/643 (22%), Positives = 280/643 (43%), Gaps = 17/643 (2%) Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-- 381 + + A L PA + I + +G + + + A V G Sbjct: 69 PAVPAAAGRELIVARLTDPACLEISLRLLGAHLEPAADTAGRVRRLAAVAGAFARGYTDA 128 Query: 382 --------IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 + A + + R + + + +D + Sbjct: 129 TRHQVLGEHETITRAALEARETAERARWVSESRFTAMFDSAAVGIVIFDPDAASIEANDA 188 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 AT+LG + G ++ D + RL+ VR AD+ Sbjct: 189 AATMLGYTRAQLAG--MGVEEFVSRADAPGIWAERRRLLEGSLDRLRLVQPVRRADDAEI 246 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 W+ + P+ +G + + +D+T+Q + + + A D LT +PNR F +RL+ Sbjct: 247 WIDAVVTPLREPDGTAQLLVAVLSDVTDQLELQQRLEHQALHDPLTQLPNRSLFFERLSA 306 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARL 612 +D D RP V +D+D +K +ND LG GD +L L R+ L+ ++AR+ Sbjct: 307 AIDRDGAD-GARPGVCYLDLDGFKVVNDTLGHQSGDQLLQVLADRLRSALEPDGHLVARM 365 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F +++ + ++ + A ++ P+ + R+I ++AS+G ++ E Sbjct: 366 GGDEFVVLVERSTDRAELEEVAGRALGTVRRPVRIDGRDIVISASVGVVR-HDGELGPDE 424 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730 +++ A+ +Y AKH G + RSD + + A+ + +VY P++RL Sbjct: 425 LMQAADTTLYSAKHAGRGRYVYYDRERHRSDVRRFELSSQMPEALRRDDFVVVYQPLVRL 484 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 DE+ VG+EAL++W P + F+ +AEE ++ + +L+ R W D+ Sbjct: 485 ADEQTVGVEALVRWQRPDGELLGPDRFIPLAEETGLVVPLGRRVLDEACRQGRIWADERP 544 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 P+ + +N+A++ + +++L + A + + + ++++ +ES +MG+P R L Sbjct: 545 DRPLLVSVNVAARQIGESDLVADVAATLERHDWPAGQLQIELTESDLMGSPGRPLATLRE 604 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIE 910 L ++G+ + +DDFGT S L+YL ++P +K G + GS E+ ILR++I +A ++ Sbjct: 605 LDRMGVRIAIDDFGTGYSNLAYLRHLPVHVLKLAGHFVAGSAERDDVILRTLISLASALD 664 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + A+ + L GC Q + A + I L+ Sbjct: 665 LEVTAEAVETREQAARLREYGCANAQGWYYAPAVVPGRIPDLI 707 >gi|323488320|ref|ZP_08093568.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] gi|323397978|gb|EGA90776.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] Length = 796 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 128/449 (28%), Positives = 237/449 (52%), Gaps = 6/449 (1%) Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 R + + + + K+++ + A+ D L+G+PNR+ FL++L + + + + V+ Sbjct: 342 RTVEVTSSNNQLKETVHQMKHMAYHDILSGLPNRRLFLEKLEASIVEAK-HKSHKLAVVF 400 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D++K IND G GD +L + ++RI + L+ D L+R G+ F ++L + I Sbjct: 401 IDLDRFKNINDTFGHEFGDLLLQAFSQRILDNLRSIDTLSRQGGDEFTLLLNAIKEEKDI 460 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A ++K++ P+ + +E+ ++ SIG + + T+ E+LKNA+ AMY AK +G N Sbjct: 461 APIIHKLQKALEKPLIIKGQELYISMSIGISVYPKDGDTTDELLKNADNAMYSAKEKGRN 520 Query: 691 HVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + + F ++ DL AV N E L Y P I EI+G+EALI+W Sbjct: 521 NYQFFSKDMAFVAARKTALEGDLNRAVINKEFTLHYQPQILAKTGEIIGMEALIRWQKND 580 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 +S EF+ +AEE +I I ++L + W D + + +N++S + + Sbjct: 581 GSIVSPGEFIPLAEETRLILPIGEWVLYTACQQAKKWHDD-GNSHLKLAVNLSSLQFMHD 639 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 +L +Q ++ T ++ S ++L +ESVV+ + E++ + LR+IG+ + +DDFGT S Sbjct: 640 DLITTIQKVLKTTGFNASSLELEITESVVLDDAEKAIARMQTLREIGVQIAIDDFGTGYS 699 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL P + +K + + +++ ++I +A +++ ++IA+ + E + Sbjct: 700 SLSYLKRFPLNNLKIAQPFVQDMATNPRDKSLVEAMIFIAHSLDMSVIAEGVETEEQLAL 759 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L +GCD IQ + PL KLL+ Sbjct: 760 LQDLGCDEIQGFLFSKPLPTTRFTKLLES 788 >gi|228903827|ref|ZP_04067942.1| Sensory box protein [Bacillus thuringiensis IBL 4222] gi|228855736|gb|EEN00281.1| Sensory box protein [Bacillus thuringiensis IBL 4222] Length = 735 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 145/562 (25%), Positives = 271/562 (48%), Gaps = 11/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R D V+ ++ + ++ + + + +I Sbjct: 178 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 235 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + L + L E R + + ++++ I + P N +++ GIA D Sbjct: 236 KDHELLKKALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 292 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT + + + AF D LTG+PNR+ F L IL+ + T+ N VM +D+D++KK Sbjct: 293 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVMFLDLDRFKK 351 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L+ + R+ L+ D++AR G+ F I+L + A + Sbjct: 352 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 411 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + E+++T SIG A + +E++KNA++AMY AK G N F Sbjct: 412 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 471 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +++ ++ +L A++ +E +L Y P + +EI+G EALI+W HPK G +S ++ Sbjct: 472 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKEIIGFEALIRWKHPKLGIVSPAQ 531 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I + ++L + W +Q + + +N++ +L + Sbjct: 532 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 590 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL Sbjct: 591 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 650 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + G + AI+ SII ++K + +IA+ + E + + L R CD+ Sbjct: 651 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 710 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ + LL ++ Sbjct: 711 IQGFFISKPVSSKDVWMLLHKK 732 >gi|168187002|ref|ZP_02621637.1| MorA [Clostridium botulinum C str. Eklund] gi|169295023|gb|EDS77156.1| MorA [Clostridium botulinum C str. Eklund] Length = 589 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 132/555 (23%), Positives = 247/555 (44%), Gaps = 17/555 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 S + S + + D + I + IH D + + Sbjct: 39 FSEIIEHSKEGIVILDEKLTVLYANCTFLKICERNIEEVRNK------RIH--DINKVKV 90 Query: 467 IL--DSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + +R E + + + + + + + YI I +DIT+ K Sbjct: 91 EFYKNIVINVKRNKTWTGELEYTTKSGRTYSLAVLGKSIISERDLRAYYIVIFDDITKLK 150 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 +S I D LT +P ++ F+ L + L V+ + +D +K IN+ + Sbjct: 151 ESERDINYLKKYDMLTELPQKELFIKNLKEEIIRLEGTGKL-VGVLTLGLDDFKFINEAM 209 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD++L +TRR+ L LAR++G+ FG+IL N I + +++ + Sbjct: 210 GHLYGDELLKDVTRRLKT-LDEDHFLARITGDEFGMILTDCENVKHIENKVNDIQQLFSK 268 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 + ++EI VTASIG + + + +++ NA A K G N + + ++ Sbjct: 269 SFLINDQEIFVTASIGISIYPLDALNVRDLIMNATSAQNFVKKNGKNSYKIYSKDMNKNA 328 Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I+ L AVEN++ L Y P + L ++G+EALI+W+HPK G + EF+ +A Sbjct: 329 YKRIEMIALLKHAVENNQFILYYQPQVSLESGNVMGVEALIRWNHPKLGLVYPDEFIPLA 388 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I + +++ R W D + + +N+++ +L + ++ + + Sbjct: 389 EKTGLIIPMGEWVIREACRQNKIWHD-NGFKNLVVSVNLSALQFEKEDLVDVIKDALRNS 447 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P +++ +E ++M N +++ L L+ IG+ + +DDFGT S LSYL P D + Sbjct: 448 GLPPKFLEVEITEGILMVNTKQAIQTLNALKDIGVKIAIDDFGTGYSSLSYLKEFPIDRL 507 Query: 882 KFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 K + S + G E AI II +AK++ ++A+ I L CD IQ + Sbjct: 508 KIDRSFIMGIPKEDNGAIANIIIELAKSLHLKVVAEGTETMEHINFLKVRKCDTIQGYYF 567 Query: 941 ASPLGFNSILKLLKE 955 + P+ + ++LK Sbjct: 568 SKPVSGDGFTRILKN 582 >gi|81301328|ref|YP_401536.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC 7942] gi|81170209|gb|ABB58549.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC 7942] Length = 901 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 147/789 (18%), Positives = 303/789 (38%), Gaps = 75/789 (9%) Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR-ACSEIALSSSLIIFLFMYLHWNRWH 279 A A ++ + L S +SS I+F + L W Sbjct: 124 LLAAAVAQATVSALIGATGNCLFGAASWNRFFTIGWTWWTGNASSAILFFPVVL---LWC 180 Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339 + LF +S + + ++ ++ Sbjct: 181 NQWRQSLQLSAKRWLELFIISAIILAIATLAFASKPYPVSSLVIPVFVWLALR------- 233 Query: 340 LIPAWI---LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 W+ + FI + ++ V ++++ ++ + Sbjct: 234 FNSTWVSTGITFITLFAFISTANGKGQFSVLA---VNEALILLQSYNSSIAVMSFSLNAV 290 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LASGSMHGPIRNW-- 452 + + V ++ IL S ++ + + Sbjct: 291 ISQARNSQTYLRQILDHLPIGVAVHELTGRMTYVNAVGREILRGKYKSATLEEMAKFFNI 350 Query: 453 ----LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + + L + + + +R D + + P+ + G Sbjct: 351 YQASKNRLTPIEELPLAMALQGQLSHTE-----DLELRWPDRT-IPLEVWGIPIHDETGH 404 Query: 509 ILRYIGIANDI-----------------------------------TEQKKSLEGILCNA 533 I + + DI +E++++ + A Sbjct: 405 IKEGMTVFQDIHERLENARLIQQANEQLSLTVQELEAANHKLEQEASERQQAQAQLWHLA 464 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LT +PNR F+++L + D V+ +D D++K +ND LG + GD +L Sbjct: 465 HFDTLTQLPNRAYFVEQLHAWFNRYKADHQYPFAVLFLDCDRFKIVNDSLGHSAGDVLLT 524 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + +R+ + P I ARL G+ FG+++ + D A + + I P + + I Sbjct: 525 QVAQRLQSCIASPVIFARLGGDEFGVLVP-AQDPGYPQDLAEQLHELIVHPFEIQGQRIY 583 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFRVSSFRSDRVMIKED 710 + SIG + ++ + E+L++A+ AMY AK G + S ++S+ + ++ Sbjct: 584 IGVSIGISFVSAQIDAAEELLRSADTAMYAAKRNPLSRGIQIFSAKLSANSLKNLALETA 643 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A++ +++ L Y PI+ L +VG EAL +W HP+ GNI EF+ +AE +I ++ Sbjct: 644 LREAIKQADIDLFYQPIVDLETGALVGAEALARWFHPELGNIPPLEFVTLAERSKLIFSL 703 Query: 771 NLFMLERIARDIISWRDQANMPP--IFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 F+LE+ I W+ + P + +NI+++ + + + ++ ++ +T S + Sbjct: 704 GNFILEKACLQIHLWQQDHLITPGDFILHVNISAQQICHEDFEDWIKDILQRTEISAQNL 763 Query: 829 KLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 L +ES V + + + LL L+ +G+ L++DDFGT S LSYL +P +++K + S Sbjct: 764 MLEITESSVAEDIDQQLLKLLDELKSMGVQLSIDDFGTGYSSLSYLQRLPVNSLKIDRSF 823 Query: 888 MTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 + + ++ I +A + ++A+ I E + L ++GCD Q + + PL Sbjct: 824 IHQINLAGDNRQVAQATIALAHSFGLEVVAEGIEEESQLYWLRQLGCDMGQGYYFSKPLS 883 Query: 946 FNSILKLLK 954 + + L+ Sbjct: 884 AADMTEFLR 892 >gi|126658801|ref|ZP_01729945.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] gi|126619899|gb|EAZ90624.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] Length = 594 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 129/440 (29%), Positives = 232/440 (52%), Gaps = 5/440 (1%) Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T+ K+ E +L +A D+LT + NR FL+R+ L ++N V+VID+D++K+I Sbjct: 153 TDLLKAQEELLFHARHDSLTELANRLLFLERVDLALKRVHEENNYTFAVLVIDLDRFKRI 212 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G VGD +LV ++R + L+ D +ARL G+ F I+L ++ + A ++ Sbjct: 213 NDSEGHIVGDRLLVEVSRSLETLVSPADTVARLGGDEFAILLDPIDDVNEALKVAQQVKT 272 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ + ++E+ + SIG + ++ E+L++A++AM AK +G E F Sbjct: 273 TLTTSFFIQDKEVFTSPSIGLSISHRKYQSAIEILQDADIAMGQAKEKGRGRYEIFNQKM 332 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + ++ DL ++ E + Y PI++L E+VG EALI+W HP G IS EF Sbjct: 333 HAQALKLLTLETDLRHGIDKEEFKVYYQPIMQLNPIELVGFEALIRWQHPYKGFISPGEF 392 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQA 816 + +AE +I + +LE++ I W + + + +N +SK D L + + Sbjct: 393 IPVAENTGLIIPLGTIVLEKVCHQIKIWNKKYPHATSLKVAVNFSSKQFNDVNLVKNIDE 452 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ K + + +K+ +E+ ++ + ++ L+ L+K + + LDDFGT S LSYL Sbjct: 453 VLEKMNLNSNNLKIEITETSLIEHSLKTIKLVKELKKRNLEICLDDFGTGYSSLSYLHRF 512 Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + E+ + I++SII +A N+ ++A+ I E + L ++ CD+ Sbjct: 513 PVDILKIDRSFINSIGQPEENLEIIQSIITLAHNLGMKVVAEGIETEEQLIYLQQLNCDF 572 Query: 935 IQDSHVASPLGFNSILKLLK 954 Q PL + KLL+ Sbjct: 573 GQGYFFNRPLPPAEVEKLLE 592 >gi|167590180|ref|ZP_02382568.1| RNase II stability modulator [Burkholderia ubonensis Bu] Length = 667 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 130/568 (22%), Positives = 248/568 (43%), Gaps = 13/568 (2%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + G+ + V +V D + G + G Sbjct: 102 ARDLAHGLAFAEQ----VVSEVNSLVVILDRNGVVQRFNRLCEEVTGRREVDVVGRSA-- 155 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 D+ S E + + + S S D Sbjct: 156 FELFMSEDQGAQSRTNISGFFSSNKPFSVERYINTINGPRLFQFRNKFVQSGSGVDEQFL 215 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 I DITE++K+ + ++ A D LTG+PNR + +++ T+L D+ L+ ++ +D Sbjct: 216 ICSGIDITEERKAQQRLIELANTDVLTGLPNRHAISEQIKTVLAGDPGDNLLQVGILFLD 275 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K++ND G GD +L ++ I L LARL G+ F ++ + Sbjct: 276 LDNFKRVNDHYGHITGDRLLKDVSSIIAGCLPENATLARLGGDEFLVLFSRGTRP-LLEA 334 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + + PI+L E+ + SIG A + T ++++A+ AMY AK G + Sbjct: 335 TAQVILERLRTPIHLGLMEVYTSCSIGIAMYPQHGDTLETLIRSADTAMYVAKEAGKHTY 394 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F V + + + +L A+E + L Y PI+ L ++ G+EALI+W P+ G Sbjct: 395 RVFSVEMNQKVAKYMWLDTNLRKALEEEQFVLHYQPIVDLATGDVHGVEALIRWQSPERG 454 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 ++ EF+ AEE +I + +++ A +W+++ I IN++++ L D + Sbjct: 455 LVAPVEFIQFAEESGLIAPLGRWVMHTAAEQAAAWKERGLET--RIAINVSARQLQDLNI 512 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 ++ + P + + +ES + + + L+ + R +G + LDDFGT S L Sbjct: 513 VRQFATILDEAGLKPGLLDIELTESCFIEDEGAALALMKQFRLLGAEIHLDDFGTGYSSL 572 Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 S L +P DT+K + S +TG + A++RS++ +A+ + +++A+ + + L Sbjct: 573 SQLSRLPLDTIKLDRSFITGIDRNPRSQALVRSVVALARALNFSVVAEGVETRAEADFLK 632 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956 ++ D Q + A P+ + + L E+ Sbjct: 633 QIDVDQAQGYYFARPMAAQAFEQWLTEK 660 >gi|94263773|ref|ZP_01287580.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455873|gb|EAT06036.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium MLMS-1] Length = 895 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 138/561 (24%), Positives = 250/561 (44%), Gaps = 15/561 (2%) Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459 ER L A+ S D V D+ + P I G + G + H Sbjct: 198 DERLRLQAAALQASRDGVMITDLKPAIIAVNPAFCEITGYTEEEVLGQNPNMFSSGRH-- 255 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + F+ + + G + E R + + ++ I + + Y+G+ D+ Sbjct: 256 GHEFFQAMWSGIKTH--GHWRGEIWNRRKSGEIYPELLSISTVYDDRQQPSHYVGVKTDL 313 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + + S E + A D LTG+ NR RL L+ + + R V++ ++D+++ + Sbjct: 314 SRLRSSEEQLQYLAHHDPLTGLSNRLLLESRLEHSLERARR-ERTRLAVLLFNLDRFRLV 372 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 N+ LG A GD +LV + +R+ + L+ D +ARL+G+ F ++L + + A ++ Sbjct: 373 NESLGYAAGDRLLVEVIKRLQKRLRADDTMARLAGDEFVLLLEGIGDYQEAERVAGWFQE 432 Query: 640 SIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696 ++A P L E+ + SIG + + T + +L A+ A+ AK GGN Sbjct: 433 ALAQPFPLPEGGEVYIQTSIGISIYPQDGETMAALLAGADAALNLAKAAGGNQFFYATAA 492 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ + ++ L A++ E L Y P + + I G EALI+W P G + E Sbjct: 493 DNTRARHNLELESALRQALKKQEFLLYYQPKVNFLSGRISGAEALIRWQRPGHGLVPPGE 552 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE +I I +++ R + +WR++ I + N++++ L L E ++ Sbjct: 553 FIPMAERSGLIVEIGAWVIAEACRQMRAWREEGLG-DIRLAANVSARQFLGEGLPELVRL 611 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + + P+ + L +ES++M PE + + L+++GI L LDDFGT S + L Sbjct: 612 ALDEHRVLPAHLTLELTESMLMFRPEEAISRMTALKELGIKLALDDFGTGYSSFASLSRF 671 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + + +I SII MA + ++A+ + E L R CD Sbjct: 672 PIDQLKIDRGFVQALVDCPDAASIAASIIAMAHRMHLQVVAEGVENEAQCGYLRRNHCDE 731 Query: 935 IQDSHVASPLGFNSILKLLKE 955 +Q PL LL+ Sbjct: 732 LQGFLFRPPLPAAEFADLLRR 752 >gi|118477933|ref|YP_895084.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str. Al Hakam] gi|118417158|gb|ABK85577.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str. Al Hakam] Length = 495 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 128/484 (26%), Positives = 233/484 (48%), Gaps = 9/484 (1%) Query: 475 RRGRLQYEFRVRAADNQFHWMII-RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 R + RV+ + + I P+ G + DIT K+ + I A Sbjct: 10 RCSSSSLQLRVKNNNEKDIHFWYVTIVPIM-IEGQTFGSYVMVKDITRMKQQQDKINYLA 68 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 F D +T I NR F L ++ + ++ ID++++K IND +G ++GD VL Sbjct: 69 FHDTVTEIGNRIFFQQELEKSIERAQKTQG-EFGLLYIDLNRFKTINDTMGHSIGDSVLK 127 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + +R L LAR+ G+ F II+ + ++ D + + P + + Sbjct: 128 EVAKRFRAYLSPSIPLARIGGDEFAIIVHNHTEQQQL-DLCENLFRITKKPFVVNQHSFY 186 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDL 711 ++ SIG A + I ++ +L++A++AMY AK +G N V + S + R+ +++DL Sbjct: 187 LSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDL 246 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+EN+EL+L+Y P I +++G EALI+W HP+ G IS EF+ IAEE I +I Sbjct: 247 PNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIG 306 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 + L+ R + W + + IN+++ + + + ++I + + I L Sbjct: 307 KWTLQEACRQLKEWHSA-GYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPANSIDLE 365 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +E + M + + + L L+ G+ L++DDFGT S L+YL P DT+K + Sbjct: 366 LTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRI 425 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + I+++II +A + +IA+ + + + L + C IQ + + P+ + Sbjct: 426 GTSNDGDEIIQTIISLAHTLNMKVIAEGVETKEQLIVLQQNACYLIQGYYYSKPVNEDEF 485 Query: 950 LKLL 953 + L Sbjct: 486 INFL 489 >gi|117618622|ref|YP_857831.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560029|gb|ABK36977.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 816 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 125/559 (22%), Positives = 254/559 (45%), Gaps = 10/559 (1%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + ++ + + + D R ++ P +++ + G +H Sbjct: 259 DKLRQANVVFETAAEGIIIMDGQRQIISVNPAFSSMTQYEEAEIVGKSPE--AIMHPRRH 316 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + + + E D + + + +S + Y+ +DI+ Sbjct: 317 TDIDYPWHTLLPGSHA-WHGEMMCLRKDGGYFTSWQHVSAVHDSRHNTTNYVIAFSDISA 375 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K+ + A+ D LT + NR +RL L + + + ++ ID+D +K IND Sbjct: 376 IRKAEAQLNHLAYHDPLTELGNRNLLQERLELELKTAQLNHQ-QLALLFIDLDGFKLIND 434 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG GD++L L RI +L+ D+ ARL G+ F +++ ++ A + + Sbjct: 435 TLGHRAGDELLKLLAERIRRVLRHNDVAARLGGDEFLVLIPFFERPQELERLAEQLLACL 494 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699 P+ L + V+ASIG A + + ++ A+ AMY AK+RG N + Sbjct: 495 REPVELGHERVAVSASIGIALYPEHATSPDTLVSAADSAMYEAKNRGRNGYLFYTPDMTE 554 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 +R+ +++ L A+E +L ++Y P+ L + GLEAL++W HP G I + F+ Sbjct: 555 QTRERMSMEQGLFKAIEQHQLCVLYQPMTELASNRMSGLEALLRWQHPSEGMIGPTRFIP 614 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I+ I +++ + +W P + IN++ +++ E + A+++ Sbjct: 615 VAEECGLIEQIGEWVMRTACQQGQAWLAAGLAVP-RLSINVSVREMRSAGYVERVAAILA 673 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +T + P ++++ +ES ++ ++S L RL+ +G+ + +DDFGT S LS L +P D Sbjct: 674 ETGFPPEKLEIEVTES-IIQRVDQSLQLFRRLKALGVQIAIDDFGTGFSSLSLLKSLPID 732 Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + + + + + + R+II +A ++ + A+ I + + L + C Q Sbjct: 733 RIKIDRTFVQALPDDKHSRELCRTIINLADSLGMMVTAEGIETQAQRQFLQSLHCQEGQG 792 Query: 938 SHVASPLGFNSILKLLKER 956 + PL + + L R Sbjct: 793 YLFSHPLAEPHLAEQLGSR 811 Score = 71.1 bits (173), Expect = 9e-10, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 6/134 (4%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 +R LA+ VW+W + DR+ + +LG + G + ++ Sbjct: 138 VEAQQRLQLAMSAGQIGVWEWHVTEDRLQFDGQVERLLGTTASQFQGGMEQFIKRFDPLS 197 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + FR ++ + D W+ I ++ ++ R G+ +D T Sbjct: 198 GEQFRAAVN-----GTAPIHLTLGYLGPDQLRGWVDIHADHVAATDHQGRRITGVIHDAT 252 Query: 521 EQKKSLEGILCNAF 534 + + E L A Sbjct: 253 SR-CNQEDKLRQAN 265 Score = 43.8 bits (102), Expect = 0.14, Method: Composition-based stats. Identities = 41/333 (12%), Positives = 92/333 (27%), Gaps = 39/333 (11%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + +D + +A + GL+ +G +L I Sbjct: 23 LQQLFELAPFGIGVFDRHFRCRSVNQTLADLNGLSREEHYGR---YLREIVPTLAPVLEP 79 Query: 467 ILDSFVGYRRGRLQYEFRVRAA--DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + R++ A + PM + G R + I D+TEQ + Sbjct: 80 LFQQIISSGVPRVELNLSGHTAAHQGRQRHWQAIYSPMLDEQGVPDRILTIVRDVTEQVE 139 Query: 525 SLEG------------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + + +D R F ++ +L +A+ + Sbjct: 140 AQQRLQLAMSAGQIGVWEWHVTED-------RLQFDGQVERLLGTTASQFQGGMEQFIKR 192 Query: 573 ID-----KYK-KIND------VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D +++ +N LG D L + + D R Sbjct: 193 FDPLSGEQFRAAVNGTAPIHLTLGYLGPDQ-LRGWVDIHADHVAATDHQGRRITGVIHDA 251 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 N K+ + + I + + ++ + F+S T + +E++ + A Sbjct: 252 TSRCNQEDKLRQANVVFETAAEGIIIMDGQRQIISVNPAFSSMTQYEE--AEIVGKSPEA 309 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713 + H + + L Sbjct: 310 IMHPRRHTDIDYPWHTLLPGSHAWHGEMMCLRK 342 >gi|296505772|ref|YP_003667472.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|296326824|gb|ADH09752.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 892 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 176/819 (21%), Positives = 336/819 (41%), Gaps = 70/819 (8%) Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260 ++ I L + + + A+ + ++ YI + GF K + S + L + I Sbjct: 78 VMEITLFLSSLSIHDQSIFSYKALPFFIIQYILLFVGFAIKFIKNYSIKGLSQFSFDSIF 137 Query: 261 LSSSLIIFLFMY---LHWNRWHAKVGYITFSGIACIAILFCMS-------FYYPMVTASI 310 + I F + L R K +I +++ Y A I Sbjct: 138 IIIMNIYFTLTFILDLSSFRMLTKDTWILIGYFIAQSLVIYAVISLYRREQYSSSRIALI 197 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 T+ + Y F + GMK LI ++ I + + K + ++ Sbjct: 198 IGFTIILVYGYIHLFQLNFGMKTSAEINYLIHTASILLIGLSSILYILDKPMQHETKTKY 257 Query: 371 LVGGLVLIVI-------------------------------------------------L 381 V ++ Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHT 317 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q + + +R D V+ ++ + ++ Sbjct: 318 YEQLTTQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--T 375 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + + +I D + + L R L E R + + ++++ I + P Sbjct: 376 AYYCEVASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N +++ GIA DIT + + + AF D LTG+PNR+ F L IL+ + T+ Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTN 492 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 N V+ +D+D++KKIND LG VGD +L+ + +R+ L+ DI+AR G+ F I+L Sbjct: 493 AN-DVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A + + P + E+++T SIG A + +E++KNA++AM Sbjct: 552 PEMYSEKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAM 611 Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F +++ ++ +L A++ +E +L Y P + ++I+G E Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HPK G +S ++F+ +AEE I + ++L + W +Q + + +N Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVN 730 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ +L + ++ +T P + + +ES+ + + L +L+ +GI ++ Sbjct: 731 LSVVQFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P +T+K + G + AI+ SII ++K + +IA+ Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLEVIAEG 850 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E + + L + CD+IQ ++ P+ + LL ++ Sbjct: 851 VETEEEWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 889 >gi|78484497|ref|YP_390422.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] gi|78362783|gb|ABB40748.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena XCL-2] Length = 632 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 123/619 (19%), Positives = 261/619 (42%), Gaps = 20/619 (3%) Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 + AW+L+ + I + + G+++ ++ + +++ + Sbjct: 23 YMFGAWLLVMGLANIQFFLIYDYFSPKFLIVPSIVGVLVGFLIAKYRILRDRIEAKQME- 81 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 S V + ++ + +I R +P + + G + + + ++ Sbjct: 82 --------FSSIVDMAEEVSYFQNIDRSYRFISPSVLKLTGYDVSTFYSMPNLFSDLVYE 133 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +D + + + + R+ W+ RP+ + ++ D Sbjct: 134 DDFPKWLA-YERSIAEGNSPEPIDVRLTTKHKGLIWIRHVSRPIYEKD-KLIAVSSTNTD 191 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT+Q E + A +D LTG+PNR++ +L D ++++D+D++K Sbjct: 192 ITDQVSQTEAMEELALKDALTGLPNRRNLSYEAQRML-----DATYPFVLIMMDLDRFKT 246 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IN+ LG +VGD +L + R +L +L+R G+ F I+ + Sbjct: 247 INESLGHSVGDLMLQKIKDRFELVLPQGAMLSRFGGDEFVFIIPGIRVEQDVEQMIRDFL 306 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 K + P++L + ++AS G+ +L+ A++AM+ AK R G + Sbjct: 307 KVVERPMHLNGLNLHISASFGWVFAPEDGKDVESLLRFADVAMHMAKQRQGVSYLRYSGQ 366 Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + ++ + + AVE ++ Y P+ + ++VG+E L +W + G +S E Sbjct: 367 VDHYHQRLLVIENRIRTAVEEKQIVPFYQPMFSTVTGDLVGVECLARWHDDELGWVSPDE 426 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAE++ +I + +LE+ + ++ +N + L + +++ Sbjct: 427 FIPIAEDINLIGKLGETILEQAIITAGKLAKFCPLKDVYFSVNASPYQLSEIGFVNKVKS 486 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + P +K+ +ES+ +G E + +LG LR +G+S+ LDDFGT S + L Sbjct: 487 LLEQYDLPPKLLKIEVTESLFIGGNEYAINVLGELRALGVSIALDDFGTGYSAFAVLREG 546 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + S + + A++ II MA + T++A+ + + L +GCD Sbjct: 547 CIDILKVDKSFVQNMADNDQEKALVAEIIQMAHIMNLTVVAEGVETKAQKALLAEIGCDV 606 Query: 935 IQDSHVASPLGFNSILKLL 953 +Q +A P+ + Sbjct: 607 LQGYLLARPMSEVEFCPYM 625 >gi|253995502|ref|YP_003047566.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gi|253982181|gb|ACT47039.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 681 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 130/575 (22%), Positives = 249/575 (43%), Gaps = 16/575 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 V+++ + + + D++ D+ + P + Sbjct: 112 LRVMRYAIERKRAELELRQSEAKVRALYEAVPDLLLFLDLEGRFLECKPAKDFQTHIEPE 171 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + + + L+ V G +E+++ ++ IR Sbjct: 172 HFLGKTIH--EALPEGIAEQAMLCLEKVVVG-SGITSFEYQMALPQGVSNYESRFIRA-- 226 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + I DI+E K++ + + A D LTG+PNR F + L + + Sbjct: 227 ----SEEQVLCIVRDISESKRTQQQLHFLAHYDTLTGLPNRLLFNESLHQAQTHANRTSD 282 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 VM ID+D++K IND LG +GD +L + RI ++ D +AR+ G+ F ++L++ Sbjct: 283 T-IAVMFIDLDRFKNINDTLGHGIGDKLLQQVGNRISLCIRESDTVARMGGDEFAVVLVN 341 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 A A + ++ +P + E E+ V ASIG + + +L+ A++AMYH Sbjct: 342 VREESDAAVVAEKIIDALRLPFMVGEHEVFVGASIGITFYRPGQDDRDVLLEKADVAMYH 401 Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK RG N+ + + + + L A++ E L Y P I + + +E L Sbjct: 402 AKERGRNNFQFYSSEMDAVAYERLVMENHLRHALDRKEFILYYQPQIAVDGGRVTAVETL 461 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP G ++ EF+ + EE +I + ++L+ + W D P+ + +N++ Sbjct: 462 LRWQHPDRGLVAPGEFISLLEESGLIVPVGKWVLKTSCQQGRIWYDAG--TPVRVAVNLS 519 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L + +++++ P ++L +ES+ M + L +L+ +G+SL +D Sbjct: 520 VRQFKHPGLVADVAEILAESGLPPELLELELTESMFMDSATGDVNKLTQLKALGVSLAID 579 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFG+ S L+YL P DT+K S + AI +++ +A+ + T +A+ + Sbjct: 580 DFGSGASSLAYLKDFPVDTLKICQSFVLNLPHNNDDSAIASAVLGLAQAMNFTSVAEGVE 639 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L CDY Q + PL + LL Sbjct: 640 NDQQANFLRERRCDYFQGFLFSKPLPVEELDLLLS 674 >gi|302877365|ref|YP_003845929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Gallionella capsiferriformans ES-2] gi|302580154|gb|ADL54165.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Gallionella capsiferriformans ES-2] Length = 1321 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 143/577 (24%), Positives = 263/577 (45%), Gaps = 26/577 (4%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 V F + + + + V D R + I G A+ M G Sbjct: 755 VFRESTEQSMTFDQKQTSDVIFNAASEAVMVTDANRRITSVNRAFIKITGYAAEEMIGQT 814 Query: 450 RNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L +H NF + + + G E R + + + I + GD Sbjct: 815 PKLLSSGVH---TQNFYDAMYASLEA-SGYWAGEIWNRRKNGEIYPQWGSITAIFGELGD 870 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + YI + +D+++ K++ E + A D+LTG+ NR F+D L LDL+ + + V Sbjct: 871 LRSYIAVFSDVSKAKQAEEHLYHLANHDSLTGLANRSKFVDYLNHTLDLARRNRGHKVAV 930 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 ID+D++K IND LG +GD L ++ RI + D+L+R G+ F +++ + Sbjct: 931 AFIDMDRFKIINDTLGHTIGDQFLKAIATRISSQCRNEDLLSRWGGDEFVLVMDRVDGPD 990 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 +A+ M + + P+ + E+ T S+G + + +++++K A+ AMY K G Sbjct: 991 SVAEAVRRMMEVVRKPLLIDGHELEPTLSVGISFFPDDAQNTTDLVKAADTAMYRVKENG 1050 Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N F + + I +L A+ +E L Y P ++ EIVGLEALI+W+H Sbjct: 1051 RNGYAFFTELQADESKKKFEIVSELNRALRLNEFVLNYQPQVKPDTGEIVGLEALIRWEH 1110 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P+ G +S + F+ +AEEL MI + ++++ + + + +W + + +N+A L Sbjct: 1111 PERGYLSPANFIPLAEELGMINQVGEWVIKAVCQQMSAW-KLGGVTYPRVAVNVAPSQL- 1168 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D+ L + +Q ++ + +++ +E + +L +LR++GI+L++DDFGT Sbjct: 1169 DSGLADYVQRTLALYGLTADCLEIELTEGAL-ERGGEVAPVLKQLRELGITLSIDDFGTG 1227 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIE-------TTIIAKD 917 S L +L P + K + S + G + + AI+++I+ + +N+ +A Sbjct: 1228 YSSLGHLKNFPINCFKIDKSFVDGLPDSVQDAAIVKTILTLGENLNVEVVVEGVETLA-- 1285 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 LT +G IQ PL I + LK Sbjct: 1286 -----QRDFLTSIGAKIIQGYCYGKPLSVEKITERLK 1317 Score = 66.9 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 3/147 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + L + E S D++ +D+ + +P ++ G ++ M Sbjct: 498 SLALALIEVLTHHALEQSEENYRFLTDNSSDMIARFDLDGVYIFLSPSCQSLFGFSAQHM 557 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 G +I D F+ L + + FR + ++ W+ ++ + N Sbjct: 558 TGCAVT--DFIMPEDCVTFQNALLLMGSTDQAQTLL-FRSQHDRSKTVWIEYTLKRIINP 614 Query: 506 NGDILRYIGIANDITEQKKSLEGILCN 532 + + D+T++ I Sbjct: 615 RSGAIEIVANGRDVTQRHTYQLAIEDL 641 Score = 53.0 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 29/300 (9%), Positives = 79/300 (26%), Gaps = 29/300 (9%) Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305 + + + + + L + + + S + ++ + Sbjct: 485 SPQWTQMEIDAANSLALALIEVLTHHALEQSEENYRFLTDNSSDM--------IARFDLD 536 Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW-ILIFIWFIGLWMAITKRLDN 364 + S+ + + + + + L+ + + R + Sbjct: 537 GVYIFLSPSCQSLFGFSAQHMTGCAVTDFIMPEDCVTFQNALLLMGSTDQAQTLLFRSQH 596 Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ------GIFSDGERQSLAVLGSGDIV 418 D + + + +I I+ V +Q I R + + +GD + Sbjct: 597 DRSKTVWIEYTLKRIINPRSGAIEIVANGRDVTQRHTYQLAIEDLHRRNAKILEAAGDGL 656 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPI--------RNWLPYIHINDRDNFRTILDS 470 V T + ILG + G + + D L+ Sbjct: 657 VSISPDGKIVYTNERVRQILGWGGSELAGKSCCQLFHARDADTSHDYPCDCPLIAQNLNK 716 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 VG + + + M++ +G + + + + TEQ + + Sbjct: 717 EVGVSATGY-----FSHKEGRAIRVDYSCTQMTD-HGKLSGAVLVFRESTEQSMTFDQKQ 770 >gi|144901067|emb|CAM77931.1| sensory box protein [Magnetospirillum gryphiswaldense MSR-1] Length = 575 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 128/555 (23%), Positives = 245/555 (44%), Gaps = 26/555 (4%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + D V R V T+ G A H Sbjct: 38 LDAIMENIRDAVVVAGSDRVPVRVNKAFETLTGHAGEVFLRQTSADASVAH-------SQ 90 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 ++ + Q E R AD + + + G Y+ + + + Sbjct: 91 LVQAIGHAGDDPWQGEIR--RADGSGLMSRVSVTAI--EAG--AHYLALL------RPAG 138 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 E D LTG+PNR F DR+ + ++++ +D++ +ND LG + Sbjct: 139 EEDCKKFGHDVLTGLPNRDIFADRVDRAVLQVNRAGG-SIALLMMGLDRFTMVNDALGHS 197 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD +L + RR+ ++ D RL G++F ++++ + A + +I P Sbjct: 198 AGDRLLTEVARRLRHCIRETDTAVRLEGDKFA-LVMTIADVDDSVIVAEKVLAAIKEPFA 256 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDR 704 + +++ VT SIG A + T+ ++K AE A++HAK G + + F +++ R Sbjct: 257 IDGQDVVVTFSIGIALYPQDSQTAEGLIKQAENALHHAKISGRSQYQFFSKDMNNKARSR 316 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + ++ + A+ N E + Y P + + IVG EALI+W P G ++ EF+ +AEE Sbjct: 317 LDLESRMRRALVNEEFVVFYQPKVSAENNRIVGAEALIRWIDPDKGMVNPGEFIPVAEET 376 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I+ I ++L R + + W+ + + +N++++ L + + ++++T + Sbjct: 377 GLIEQIGTWVLRRSCQQVREWQGMGLET-VKVSVNVSARQFKSRALLDIVTGVLAETGLA 435 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P ++L +ES++M + E + + LR +G+ L++DDFGT S LSYLG P T+K + Sbjct: 436 PKWLELEITESMLMNDVEAAVKKMTALRDLGLGLSIDDFGTGYSSLSYLGRFPITTLKID 495 Query: 885 GSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + + K I R+II +++ + ++A+ I+ L GCD +Q + Sbjct: 496 RAFIADVDHNPKTAEIARAIIGLSRGLNLEVVAEGCEIAAHIQFLKDNGCDTVQGFFYSR 555 Query: 943 PLGFNSILKLLKERF 957 P+ +L + F Sbjct: 556 PVPAEQFQAMLADGF 570 >gi|237748731|ref|ZP_04579211.1| signal transduction protein [Oxalobacter formigenes OXCC13] gi|229380093|gb|EEO30184.1| signal transduction protein [Oxalobacter formigenes OXCC13] Length = 706 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 144/556 (25%), Positives = 255/556 (45%), Gaps = 18/556 (3%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR--TIL 468 + V + I +LG + ++ +H +R Sbjct: 154 LDEIRVGVMQLAQDTRILYANRTIKKLLGYTDETF---PVSFNDLLHPQNRKKAETVKSW 210 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY-IGIA-NDITEQKKSL 526 Y E +R D + I + I +D K Sbjct: 211 QELW-YTTSHFHIELPLRCQDGSYILTNNEISLKLDDKRKPAYALIATLPSD----KDYS 265 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 D LT +P+R L +D SA +++++++++K +N+ LG Sbjct: 266 GERRNLFLYDRLTSLPSRNYADLLLNDAIDRSAKSRQ-SFAILLLNLNRFKMVNESLGHE 324 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD++L S+ R+ L+ DI+ R+ + F ++L + N I A + SI+ P+ Sbjct: 325 VGDELLKSIAIRLSTSLRKEDIVIRMGNDEFIVVLQNIRNDDNIDMIAHNLLYSISRPMK 384 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 L ++TVTASIG + + +LK A++AM AK G N F + Sbjct: 385 LAGHDLTVTASIGCSVYPRDSTEIDSLLKYADIAMIEAKRTGMNAFRFFNRDMSVTVLDQ 444 Query: 707 I--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + + L A+E E Y P + L +IVGLEALI+W+HP+ G I ++EF+L AE + Sbjct: 445 LLNETSLMRAMEKKEFLAYYQPRLSLSTGKIVGLEALIRWNHPQKGLIPAAEFILQAERI 504 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I+ I FML+ + ++ WR++ I + IN+AS +L D++L ++ ++ KT S Sbjct: 505 GLIRRIGEFMLKTVTTQLMRWREKNKQL-IPVAINVASTELYDSDLKNALKDILDKTGLS 563 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P +L +E+ ++ + + R L +RK+GI++++DDFGT S LSYL +P D +K + Sbjct: 564 PKLFELEITETGLIEDIRKVRATLSEIRKMGITVSIDDFGTGYSSLSYLSTLPVDYLKID 623 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S + + +I+ + I +A ++ +IA+ + + ++ L GCD IQ + Sbjct: 624 SSFIANVIVNKNTASIVETTINLAHSLHMQVIAEGVSTQEQLEFLVNRGCDQIQGYLCSR 683 Query: 943 PLGFNSILKLLKERFP 958 PL + + L + P Sbjct: 684 PLSPDELDIFLDKFMP 699 >gi|172036052|ref|YP_001802553.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC 51142] gi|171697506|gb|ACB50487.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC 51142] Length = 594 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 129/439 (29%), Positives = 229/439 (52%), Gaps = 5/439 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 K+ + +L A D+LT + NR+ FL+R+ L + N V+VID+D++K IN Sbjct: 154 ALIKAQDELLFYARHDSLTHLANRRLFLERVDLALKRVHEESNYIFAVLVIDLDRFKMIN 213 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G VGD +L+ ++R + L+ D +ARL G+ F I+L + + A ++ + Sbjct: 214 DSDGHMVGDRLLMEVSRTLETLVSPADTVARLGGDEFAILLDPIEDVNEALRVAQEIKNT 273 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + + RE+ + SIG + ++ E+L++A++AM AK +G E F Sbjct: 274 LTTSFFIQNREVFTSPSIGLTISLPNYQSALEILRDADIAMGQAKEKGRGRYEIFNQQMH 333 Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++ DL +E E + Y PI+ L +VG EALI+W HP G IS EF+ Sbjct: 334 TQALKLLTLETDLRHGIEKEEFEVYYQPIMTLNPIALVGFEALIRWQHPHKGFISPGEFI 393 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQAL 817 +AE +I I +LE++ + +W+ + + +N++S+ + +L E + + Sbjct: 394 PVAENTGLIIPIGKIVLEKVCYQLQTWKKNHPHTTVLKVAVNLSSQQFNNPDLVEEIDEI 453 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + KT + + +K+ +E+ ++ + + LL L++ + + LDDFGT S LSYL P Sbjct: 454 LEKTGLNSNNLKIEITETSLIEHSLETIKLLKELKQRNLEICLDDFGTGYSSLSYLHRFP 513 Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S + + + + I++SIIP+A N+ T++A+ I E + L ++ CD+ Sbjct: 514 VDTLKIDRSFVNCIGQPDENLEIIQSIIPLAHNLGMTVVAEGIETEEQLIYLQQLHCDFG 573 Query: 936 QDSHVASPLGFNSILKLLK 954 Q PL KLL+ Sbjct: 574 QGYFFNRPLPPTEAEKLLE 592 >gi|170735237|ref|YP_001774351.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia MC0-3] gi|169821275|gb|ACA95856.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia MC0-3] Length = 693 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 155/658 (23%), Positives = 288/658 (43%), Gaps = 17/658 (2%) Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 + ++ + A + + S+ GY+ A+ L+ I I LW+ Sbjct: 39 AAQWWLVGAACVMGTGIWSMHFVGMLAFALPIPLGYDPAITLLSLLIAIVCSTGALWLVC 98 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 L + + + + + ++ G + ++AV+ SG ++ Sbjct: 99 RDTLKWRRLCGGAMLMGAGVAGMHYTGMASMRMSPGIRYDPLLVCLS-VAIAVVASGAVL 157 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 W I R +L L S + G + +H R +L S G R Sbjct: 158 WIVFIRR----ANSSRVRLLNLGSAVLMGAA---IAGMHYTGMAAARFLLGSICGAAGSR 210 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 + + ++ +S + + + T ++ + + A DNL Sbjct: 211 MDAGWLALVIIVATLAILAIALIVSILDLRLEARTAVLA--TSLAEANQELTYLALHDNL 268 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 T +PNR DR+ + + + +M +D+D +K +ND G VGD +LV + RR Sbjct: 269 TKLPNRVLLEDRIDQAIQGADREHG-SFALMFMDLDGFKAVNDAYGHHVGDLLLVDVARR 327 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 IG L+ D +ARL G+ F + ++ + AD A + I P + E E+ V+ASI Sbjct: 328 IGANLRSQDTIARLGGDEFV-LAVAVDEPADAADVADKILAVIRKPFRVAEHELRVSASI 386 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVE 716 G A + + +++ NA+ AMYHAK G N F S + + + I ++L LA+E Sbjct: 387 GIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCLFEASMNANVREHLKIVQELRLALE 446 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 EL L Y P + I+G+EAL++W HP G IS +F+ IAE+ +I I ++L+ Sbjct: 447 RRELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFISIAEKTGLIVPIGEWVLD 506 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 R + W D + +N++ L ++A + + P + L +ES Sbjct: 507 EACRQMRVWCDA-GRTDWTMAVNLSPLQFGHASLIRVVEATLQRHALEPHCLTLEITEST 565 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 M + + S +L +L +G+ +++DDFGT S L YL +P +K + + + Sbjct: 566 AMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFIRDLEHDTE 625 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 AI+ +I+ + + ++ I+A+ + + LTR+GC+ +Q + P+ + +++ Sbjct: 626 DAAIISAIVALGRALDLKIVAEGVETTAQQQFLTRLGCNSLQGFLLGRPMPADHFIEM 683 >gi|117617732|ref|YP_854617.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559139|gb|ABK36087.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 847 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 138/564 (24%), Positives = 265/564 (46%), Gaps = 21/564 (3%) Query: 400 IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455 + E+ L + + D ++ P I G + + G + L Sbjct: 285 LKRHAEQLKLSHRVYDNLSEAILVCDADSRIISVNPAFEQITGYSEEEVCGQRPSMLKSG 344 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 +H D+ + + + R G + E + + + + + I + G I +YI I Sbjct: 345 LH--DQAFYADMYHAL--ERVGVWRGEVWNKRKNGKLYPQQLMISTLR-EGGRISQYIAI 399 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D+++ K + + I A DNLTG+PNR F L+ + R +MV+D++ Sbjct: 400 FSDLSQTKLAEQKIAAQANYDNLTGLPNRWLFGRCLSRFCER-----GERFALMVLDLNN 454 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +N+ + GD +L ++ R+ ++ D++AR+ G+ F ++ N + FA Sbjct: 455 FKAVNNSMDHHAGDALLREVSDRLVSRVRTEDLVARIGGDEFAFLVPGIVNRRQAEVFAK 514 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVES 694 + A P L + + VTA+IG + S E+L+NAE A++ AK +G Sbjct: 515 QVIGGFARPFMLANQHLYVTATIGITLCPGDGLESDELLRNAEQALFAAKRQGRLLGSYC 574 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R +++DL A++ +L + Y PI + LEAL++W HP WG +S Sbjct: 575 ASMREEVRQRHQMQQDLAEAIKLEQLTMAYQPIWDNRSGRVAKLEALVRWYHPHWGQVSP 634 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELCE 812 ++F+ +AEE +I+ + +L + RD+ + Q+ P + + IN ++ + D E E Sbjct: 635 ADFIPLAEEAGLIQGLGALVLWQSCRDLARLQ-QSGFPDLQMSINRSTLEFQTIDPEASE 693 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ +I P+ I + +ES++M ++ R+ + LR+ G L +DDFGT S L+Y Sbjct: 694 WLK-VIHHFGLDPADIVIEITESLLMETSDQHRVRIDALREAGCKLAIDDFGTGYSALNY 752 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D VK + + + E+ +L II + N+ ++ + + + L + Sbjct: 753 LRNFPVDLVKIDRAFVRHIPFNEQDRLLLDGIINIVHNLGMQVVIEGVETREQLNFLCQK 812 Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954 GC + Q ++ PL ++ + + L+ Sbjct: 813 GCAFTQGYLLSRPLAYDDLTEYLQ 836 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 3/133 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + + D+ + T P I +LG + + L H D Sbjct: 172 LHTMMSHAPVGIGKLDLNGKILWTNPAIEKMLGYSQSELLHRTAAELN--HPEDWLRSAA 229 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + R E R D Q W + + + + + + +I K+ Sbjct: 230 CYEELKRGERTAFTQEKRYLHRDGQVLWGRVTVTLVRDDQLQPDYLMVVLENIDPLKRHA 289 Query: 527 EG-ILCNAFQDNL 538 E L + DNL Sbjct: 290 EQLKLSHRVYDNL 302 >gi|91976371|ref|YP_569030.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91682827|gb|ABE39129.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisB5] Length = 801 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 151/809 (18%), Positives = 295/809 (36%), Gaps = 51/809 (6%) Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWV----- 227 + +W L G++ G + LA + + Sbjct: 2 LRVWNCLE-TQHDWRLLLVAGLV-GFLTSLAAVNLYQ-RARGDTERPNLSWLLTAGVVTG 58 Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII-FLFMYLHWNRWHAKVGYIT 286 V + + L+ L S I + + RW VG Sbjct: 59 VGIWSTHFIAMLAYLPGFDFDFDFSLTIASLIVAAVMATLGLSVAAYGEARWTTVVGGGL 118 Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 ++ + +A + + E L A L Sbjct: 119 VGAGIAAMHFMGVTSLNFATLWDWDLVAVALLFGLSLSVGAVALAQRGETLRSLAGAAGL 178 Query: 347 IFIWFIGLWMAITKRL-----------DNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395 + + + I L + ++ I + L Sbjct: 179 LALAIGSHHFIAMGAMDVLRPIQIYDATGRISPLTLCLTIAVVTGAIAVAALLVALVDRR 238 Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 ++ + + +A+ G + +D+ + L + + + Sbjct: 239 SNRRVAERSMQLDVALNNMGRGLCMFDVGGRVQLFNSQYLEMYNLRASDIR-SGDDLDRL 297 Query: 456 IH--------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 +H +D D L + + R + ++ D + + +P++N Sbjct: 298 LHLKTAVGTSPSDVDAHCGHLSAAIAER---IPADWMTALPDGRKIHV--TYQPIANG-- 350 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ D TE+ ++ I A D LT +PNR +F L + + Sbjct: 351 ---GWVITHEDCTERVQNRARIDFLAHHDALTQLPNRIAFDRHLEEAILRAKAT-RSSFA 406 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 + +D+D++K+INDV G GD L + RR+ +AR+ G+ F I++ Sbjct: 407 AICVDLDRFKEINDVYGHGAGDAFLRDVARRLTAA-GDGAFVARIGGDEFVIVVEKGVQP 465 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + + ++ + L + SIG A + + ++ E++ NA+ A+Y K Sbjct: 466 RAAEELCGRIVRAFDLDFQLKGGAVKGGCSIGVAIYPDNGSSAEELIANADAALYRVKAD 525 Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 F + ++ M+ ++L AVE + + P + E+VG E L +W Sbjct: 526 QRGSFRFFETTLDASLREKRMLHKELIEAVEAEQFEPFFQPQV-TASGEVVGFEVLGRWR 584 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G + + F+ +AEE +I I+ +L R+ SW P+ I +N++ D Sbjct: 585 HPNRGLVMPARFIALAEETGLISGIDEQILRAACREAASW-----DRPLSIAVNLSPIDF 639 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 ++ + +++ +T SP R+ + +E V+M + R+ L R+R +G L +DDFG+ Sbjct: 640 RRGDVASMILSILFETGLSPGRLNVEITEGVLMQDDGRAMSQLRRIRDLGAHLAMDDFGS 699 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PFD +K +G+ + GS + AI+R+II + ++ ++IA+ + Sbjct: 700 GYSSLSYLQAFPFDKIKIDGTFVAQLGSNPQSRAIVRAIIGLGHSLGLSVIAEGVETNAQ 759 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952 + L +GCD Q + P + L Sbjct: 760 FELLVALGCDEFQGYLIGHPAPAAAYRDL 788 >gi|228906292|ref|ZP_04070177.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] gi|228853315|gb|EEM98087.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200] Length = 689 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 122/550 (22%), Positives = 252/550 (45%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + R ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 LFKGALQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L S + ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFLKES-----INFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KECVEEIAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEKNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|94500854|ref|ZP_01307380.1| Hypothetical protein yddU [Oceanobacter sp. RED65] gi|94426973|gb|EAT11955.1| Hypothetical protein yddU [Oceanobacter sp. RED65] Length = 913 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 139/622 (22%), Positives = 280/622 (45%), Gaps = 36/622 (5%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416 I + + + + I IQ LA + + +R + S D Sbjct: 305 QILGIVFILLPYKQTFSQGFIDFLSILVYQIQLELAHSKDQLKLEQNTKRYRSFIQNSND 364 Query: 417 IVWD----------------WDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + D WD+ ++ + + I N H Sbjct: 365 AILDLKIDPAMDINLDSDKQWDLILENGQVAQINQRFCSLFEVPKNADTTLILNTKSIKH 424 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 ++ + E R + + W+ + + + Sbjct: 425 ---------VIRYILQSSNPNSNIETRFINSSGEVLWLQCTTMAEIYDD-KLFGIWLMTR 474 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DITE + +E + D+LTG+PNR + + L ++L+ L+ ++ D+D++K Sbjct: 475 DITENRTHIERLEYKTRHDDLTGLPNRNALSELLDEKIELAKQ-FGLKVGLLFFDLDRFK 533 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIA 636 ++ND LG GD +L + +RI L+ L RL G+ F I++ + N+ ++ + A Sbjct: 534 EVNDALGHNYGDVLLKKIPQRINNYLQPINAKLCRLGGDEFAIVIPTIENTAQVLELAKD 593 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESF 695 ++ ++ +L + + V+AS+G + + + +++ A++AMY AKH GG S Sbjct: 594 IQTALRQAFDLGQLHVEVSASLGVSCYPENGSDVGTLMRCADVAMYKAKHTPGGILSYSA 653 Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + R+ I + ++ + +L Y P + L + EALI+W HP+ G IS Sbjct: 654 NLDEGSPRRLAIMAAINSGLKQDQFFLHYQPKMDLKTGHVTAAEALIRWQHPEMGLISPG 713 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 EF+ +AE +I + ++L++ + ++ + + + +N+++++LLD+ L + Sbjct: 714 EFIPLAEMSDIIIDLTEWVLDQAIYQLKKFQ--LSQKDVRLSVNVSTRNLLDDNLVPYIH 771 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 A + + P +++L +ES +M +P+R+ L +L +G+S+++DDFGT S L YL Sbjct: 772 AKLEEYDVRPQQLELEITESALMVDPDRALETLNKLSGLGLSISVDDFGTGYSSLVYLRR 831 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P D++K + + ++ I+ SII + N+ T++A+ + ++ L MGCD Sbjct: 832 LPIDSLKIDLMFVRNMCRNDQDAIIVNSIINLGHNLSLTVVAEGAEDKATVEVLKTMGCD 891 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 Y+Q ++ P+ + L+LL E Sbjct: 892 YVQGYQISKPVPEDEFLRLLDE 913 >gi|126665368|ref|ZP_01736350.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter sp. ELB17] gi|126629996|gb|EBA00612.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter sp. ELB17] Length = 756 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 125/570 (21%), Positives = 238/570 (41%), Gaps = 18/570 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ++ V D V T I G N Sbjct: 184 DRITAQRKSNEQSKQMHAIVESMQDGVVTISNKGVIRTFNRGAECIFEYGRDEAIGLDVN 243 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR---VRAADNQFHWMIIRIRPMSNSNGD 508 L I+ +RD + +++ G + + I GD Sbjct: 244 VL--INTPNRDYLNKYISNYISRNTGNAIQRYHELDAINKYGTVFPIEI-GMTQMPPLGD 300 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I + I DIT++KK + I A+ D LT +PNR+ DRL ++ + Sbjct: 301 IDFVV-IVRDITQRKKREDEIRQLAYYDPLTRLPNRRLLKDRLQQVIANCGRQSRY-AAL 358 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +D+D +K +ND LG GD +L + R+ E ++ D ++RL G+ F +++ ++ Sbjct: 359 FFLDLDNFKNLNDSLGRTKGDLLLCQVAARLIESVRHGDTVSRLGGDEFVVLIEGLSSDR 418 Query: 629 KIADFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 A + + + +L +ASIG ++ S+ + ++LK A++A+Y Sbjct: 419 NEAAVQVEAAAGKINVQLTQKFDLDGSPYNGSASIGVTTFNSNDSSLEDLLKQADMALYK 478 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK + V F + +++DL A+ ++ L Y I + ++G+EAL Sbjct: 479 AKAADHSSVHFFDPQMQVVASLRAAMQQDLYEALRKNQFQLHYQKQIDQHEG-LIGVEAL 537 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP G IS ++F+ +AEE +I I ++L + + W + I +NI+ Sbjct: 538 LRWAHPTKGFISPAQFIPLAEETGLIVPIGEWVLREACQTLAQWASDPAKANLTIAVNIS 597 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ + ++ + P +KL +ES++ + E ++ + L++ G++ ++D Sbjct: 598 VVQFNKKDIVHTVLNALNASGAKPHNLKLEITESLLASDVENVKVKMLELQRHGVTFSID 657 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L YL +P +K + S + + AI +++I +A + +IA+ + Sbjct: 658 DFGTGYSSLFYLKQLPLHQLKIDQSFVRDIINSPNDQAIAQAVITLAIAMHLNVIAEGVE 717 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 E L +GC Q P + Sbjct: 718 TEAQRAMLQDLGCGAYQGYLFGKPCALQDL 747 Score = 98.1 bits (243), Expect = 7e-18, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 2/136 (1%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHI 458 I + E + + W ++ +T A +LG + R W H Sbjct: 61 ISYNEEMLKSVINANNIGTWRLNLQSGELTINEKWAHLLGYKLHELMPTDRKTWENLTHP 120 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIAN 517 D + L+ + + + R++ + ++ W+ R + +S+ +G IG Sbjct: 121 EDLAYCISELEKHSMGQVPAYEADIRMKHKNGEWVWINTRGQVLSSTEDGKTEWLIGTHF 180 Query: 518 DITEQKKSLEGILCNA 533 DI ++ + + Sbjct: 181 DINDRITAQRKSNEQS 196 Score = 42.6 bits (99), Expect = 0.35, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + R+ + +W+ I P+ ++NG I I DIT++K+ Sbjct: 1 MQKATAGRK-SFNVDVINYTKSGTPYWVRIACDPLWDNNGQFKGCIAIETDITKEKR 56 >gi|240137808|ref|YP_002962280.1| putative sensory box-containing diguanylate cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens AM1] gi|240007777|gb|ACS39003.1| putative sensory box-containing diguanylate cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and EAL domains [Methylobacterium extorquens AM1] Length = 815 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 137/681 (20%), Positives = 274/681 (40%), Gaps = 17/681 (2%) Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339 + I+ + + + +AS L + Y + L Sbjct: 129 GRGYRISAGFALALGLAWATMPVVLFCSASSDERLLVVSIAAGLISDAYVVGPLLSVSYL 188 Query: 340 L-IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL-VLIVILIGFTVIQHVLATGYFS 397 IP + FI I + ++ A G+ V + + I + S Sbjct: 189 FAIPVIVGSFIGLARSGEPIALSIAVLLLVYATFVGVSVHRMSRLSRQRILDRVRVEDQS 248 Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 + I + D +W+ + +P +A LG + L Sbjct: 249 ETIGLLLNEFE---ENTSDWLWETNETGRFQHVSPRMADALGCPIERLQRSSFRDLLRAG 305 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + ++ L S + + + + W+ + +P ++ G + + G+ + Sbjct: 306 EDRDEDRTPDLLSHLRQGKAFHECLVAIETPTG-LRWLALSGKPFTDQRGTLAGFRGVGS 364 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+T+++++ I A +D LTG+ NR F D ++ R ++ +D+D +K Sbjct: 365 DVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEAC-TASMSGGPRVHLLYLDLDGFK 423 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 K+ND G GDD+L + R+ + + RL G+ F I+ +S ++ A A+ Sbjct: 424 KVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHLSRESAE-AEILAEAV 482 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 S+ P + + + SIG A ++++ A+LA+Y AK G + F Sbjct: 483 IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCFEA 542 Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + + N E+ L Y P++ L D E+VG EAL++W P G +S + Sbjct: 543 DLERRVQRWRELDSAMRAGLTNGEMELHYQPLVSLQDGEVVGCEALLRWTRPGLGPVSPA 602 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 E + IAE + I + L + ++W P+ + +NI+S + + ++ Sbjct: 603 ELIPIAESTGFVITIGRWALRTACAEALTWP-----VPMRVAVNISSTHFRLPDFFQEVE 657 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 A + T +P R+++ +ES+ + N L LR G+ + LDDFGT S LSYL Sbjct: 658 AALDATGLAPERLEIEITESIFLANTPHVLENLQALRAKGVRIALDDFGTGYSSLSYLTQ 717 Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 D +K + + + + + +A++++I+ +A ++ + + + E + L C+ Sbjct: 718 YRVDKIKIDRAFVRDLSSRPECLAVIKAIMVIAGDLRIDVTVEGVETEQQAELLRLRRCN 777 Query: 934 YIQDSHVASPLGFNSILKLLK 954 Q + + L++ Sbjct: 778 SAQGFLYSPARPSGEVTGLIE 798 >gi|240140829|ref|YP_002965309.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS sensor [Methylobacterium extorquens AM1] gi|240010806|gb|ACS42032.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS sensor [Methylobacterium extorquens AM1] Length = 817 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 151/755 (20%), Positives = 280/755 (37%), Gaps = 36/755 (4%) Query: 219 IPTFAMAWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWN 276 W + + F L I A + ++ + L Sbjct: 55 FVFGCSVWSLHFVAMLAFQPGAQAAYGLLPTAASIGIAVAGALIAFLIWCRADHDPLKVA 114 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + A + L + G R Sbjct: 115 AAGLVLAAAISGMHYAGVGAMAANSLLAFEEALVHASLGLCATLAVIALARAGDLAGLGR 174 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQ 388 + + L M + L + L+ + + + Sbjct: 175 RIEVSLWLALAICGLHFTGMTALTVAPATPVAGGGAVLGSTQLGLAVGLVSLAVLGAGLT 234 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +L + + + R L + ++++ V + G + + G Sbjct: 235 ALLMQQHLMRRRMDELSRMRLLGNLAHEVLF-IHREGRVVEINQAGLRLFGAPASEIIGR 293 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L D L + EF VR A + + R + + G Sbjct: 294 P--LLDLFAEADAPVL---LRRSRCHPEDLFPEEFEVRTAAGIAVPVELTCRAI-DYLGR 347 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + + ++ +++ I A D LT +PNR +RL L+ +A + + Sbjct: 348 PATAVALRD-LSRRRRDEARIRHLALHDALTDLPNRTLLEERLGLALENAAEN-GTSVAL 405 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +D+D++K +ND G A GD +LV +R+ L+ D LAR+ G+ F I+L Sbjct: 406 AYLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRTLA 465 Query: 629 KIADFAIAMRKSIAMPINLLER--------EITVTASIGFASWTSSKITSSEMLKNAELA 680 ++A+ A + ++ P + + + + AS+G A + S T+ + + A+ A Sbjct: 466 QVAETAERLVAALGRPFQIEGQIGGSVEGLRVEIGASVGIALYPSDGSTAESLKRAADTA 525 Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y K G V F + R I+ +L A+ EL L Y PI+ EI Sbjct: 526 LYRVKDEGRGAVRFFEAAMDEQLQARRRIEHELSGAIARGELALDYQPIVNGRTGEIEIF 585 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + ++F+ +AE+ I I ++L+ +W P + + Sbjct: 586 EALIRWHHPERGCVFPADFIPLAEQTDQIGRIGAWVLDTACAAAAAWP-----HPWRVSV 640 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ K G+ A++ + SP R+ L +ESV + + + +L LR +G+ L Sbjct: 641 NVSPKQFRQPGFAAGVAAVLGRHGLSPGRLVLEITESVFIHDAATALTVLTALRTLGVRL 700 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 LDDFGT S LSYL FD +K + S + G + I+R+I + N+ T+ + Sbjct: 701 ALDDFGTGYSSLSYLQRFQFDKIKVDRSFVRGLGQHADALTIVRAITHLGHNLGLTVTVE 760 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + + L +GCD +Q A P ++ + Sbjct: 761 GVETQEQLTVLRELGCDQMQGYLFARPAPMTNLSE 795 >gi|328882651|emb|CCA55890.1| putative sensory box or GGDEF family protein [Streptomyces venezuelae ATCC 10712] Length = 622 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 141/589 (23%), Positives = 265/589 (44%), Gaps = 48/589 (8%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 A + + D V ++LG ++H + L + + R Sbjct: 33 YHAAFRVAQLAMAVVDEDGLVVAANDSFGSLLGSEPTALHAQAASDLVDLASDGRT--WH 90 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + RR R + R++ AD + W + + P+ +S R + DI+++++ Sbjct: 91 AYREVLRGRRSRFRCTRRLKHADGRSLWAEVTVAPVPDSR----RVLLSIADISDRRELQ 146 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD------------------------- 561 + D +T +PNR F +RL+ L+ SA D Sbjct: 147 ARLRHLQMHDPVTRLPNRALFFERLSAALEASALDAAEGVTAGSPAPGETITSSYESYGY 206 Query: 562 -DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-------LARLS 613 R + +D+D +K +ND LG VGD +L ++ R+ E +ARL Sbjct: 207 GRTGRIGLCYLDLDGFKAVNDTLGHRVGDRLLAAVAARLTECADNDGYTRSGGHLVARLG 266 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F I++ + ++AD A ++ ++ P +L + ++V+ASIG + T++ + Sbjct: 267 GDEFAILVEDSTGTEQLADLARSVLNALQQPFDLGGQRLSVSASIGVVERSGHGTTATAL 326 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLM 731 ++ A+ +Y AK G F + L AVE E L Y P++ L Sbjct: 327 MQAADTTLYWAKADGKARWTLFDPERNAHRMTRQALSSTLRPAVERGEFTLEYQPLVELA 386 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 D + G+EAL++W+HP++G+++ + F+ IAEE I + ++L R W+ Sbjct: 387 DGAVRGVEALVRWNHPQFGSLAPNRFIGIAEEDGSIVELGRWVLRTACRQARQWQKDRPR 446 Query: 792 P-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 PIF+ +N+A + + D++L + ++++T +P ++L +ES VMG+ R L Sbjct: 447 ERPIFVSVNVAVRQVWDSDLVADVAGILAETGLAPHLLQLELTESAVMGSAGRPLQALQA 506 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG------STEKRIAILRSIIP 904 L +G+ + +DDFGT S L+YL +P +K +GS + G + I+ +++ Sbjct: 507 LSDMGVRIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFQDEEHANPADELIVEALVQ 566 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +A + T+ A+ + L R+GCD Q + + + I +L+ Sbjct: 567 LAHRLGLTVTAECVETAGQASRLRRIGCDTGQGWLYSRAVAPDRIAELI 615 >gi|311696871|gb|ADP99744.1| LOW QUALITY PROTEIN: diguanylate cyclase/phosphodiesterase [marine bacterium HP15] Length = 709 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 125/554 (22%), Positives = 249/554 (44%), Gaps = 17/554 (3%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466 + S + + D + P + I G + + G H +R+ Sbjct: 143 ASVFDRSHEAILITDQSNRILDVNPAFSRITGYSRQEVLGLNPAILSSGRHSG--AYYRS 200 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + + + E R + + ++ I + ++ +DIT K Sbjct: 201 MWRTI--EKTDHWRGEIWNRRKNGEEFVELLSISRVHLEEPGQYYHVAAFSDITALKNHA 258 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + A D+LTG+PNRQ +RL T + +V +D+D +K IND G + Sbjct: 259 RELDRAANYDDLTGLPNRQLLEERLRTARSHADRQHR-SVSVCYLDLDGFKGINDKWGQS 317 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD L +L R+ L+ D +AR+ G+ F ++L ++N + + ++ P+ Sbjct: 318 AGDQTLRTLAERLTRALRSGDTVARIGGDEFVLLLQGDDNHEAVYQ---RILATVGDPVT 374 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + ++ +++TAS+G + + ++++A+ AMY AK +G N F R +R Sbjct: 375 VGDQNVSLTASLGITRYPEDGSDAEGLIRHADQAMYSAKEKGRNQYHLFDPGLDEHRRNR 434 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 ++ A+EN E L P + + I+W+HP+ G +S EF+ I E Sbjct: 435 RNQLMEISRALENEEFELFSSP-RSVSRIANFSVLRRIRWNHPQKGLVSPGEFLPIVENS 493 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-Y 823 + + ++L+ + +W++ + I INI++ L+D + +++ + Sbjct: 494 HLEVPLGQWVLKEAIHQMNAWKEAG--ENLAISINISAPHLMDRSFADYLESYLHSHPEV 551 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 +P +I L ES + + +R+ +L R + +G+ + LDDFGT S L+YL +P D +K Sbjct: 552 APGQITLEVLESTALEDTQRASNVLARCQSLGLQVALDDFGTGFSSLTYLRTLPVDIIKI 611 Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + S + AI+ S+I +A+ ++A+ + + L +MGC+++Q +A Sbjct: 612 DQSFVRNMLEDAGDRAIVESVIFLAQRFAHPVLAEGVETMEHARTLRQMGCNFVQGYGIA 671 Query: 942 SPLGFNSILKLLKE 955 P+ +L ++ Sbjct: 672 RPMPAAEVLGWARK 685 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 2/128 (1%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R ++ + + + D P G + G + + Y D + + Sbjct: 18 RLAMVAAATPNFLVMLDDAGRIEWVNPSFEEHTGYQLEEVRGCLPKEVLYGPDTDPETIK 77 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 I +R ++ + Q +W+ P+ G YI I N+I+++K S Sbjct: 78 RINQKL--HRAEIIEEDILHYTKAGQPYWVHTYCVPIGTEQGVAPGYIAIQNNISDRKNS 135 Query: 526 LEGILCNA 533 G+ A Sbjct: 136 ERGLRIAA 143 >gi|288942578|ref|YP_003444818.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM 180] gi|288897950|gb|ADC63786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Allochromatium vinosum DSM 180] Length = 648 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 149/575 (25%), Positives = 256/575 (44%), Gaps = 17/575 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 Q I R S D + L H Sbjct: 76 ELVQSQQRIQEALARFSSFFNTLPIAELVIDRQGLIHEANLAAQQLFHLRGTQFHQHF-- 133 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 ++ I +D+ + DS + + E R RA + I +++ L Sbjct: 134 FVRLIAESDQATVVSAWDS-LHADAAIVIPEVRFRAKGEADFIGDLHIASIASLAEGALH 192 Query: 512 YIGIANDITE-------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 Y+ D TE +++ E + A D LTG+PNR F RL L + Sbjct: 193 YVCAIIDRTEAVRQRQRLREASERLDYLAHHDALTGLPNRAYFQSRLEQCLQRAKRYQR- 251 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R ++ +D+D++K++ND LG VGD +L + + ++ D +ARL G+ F IIL Sbjct: 252 RFALLFLDLDRFKEVNDTLGHHVGDALLCRVAEILSAQIRDVDTIARLGGDEFVIILEDI 311 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + I F + + P+ L RE VT S+G + + + +++ A++AMY Sbjct: 312 SEPRFIMHFVDRVMDDFSRPLRLEGREFFVTVSVGISLYPDDGLDLETLVRRADIAMYQT 371 Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G N F + +R+ ++ DL LA++ E L Y P + L+ E++G+EAL Sbjct: 372 KKSGRNGFSFFEPTMSAGAIERLHLEHDLRLAMQREEFELYYQPQVDLITGELMGVEALC 431 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G + F+ +AE+L +I + L +LE R +++W P + +N++ Sbjct: 432 RWRHPQLGVLLPGLFIPMAEDLGLIDELGLRILELGCRQMVAWDASGLNVP-RLAVNLSV 490 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 ++L +L + ++ +T P R++L +ES +M + E + L L LR +G++L +DD Sbjct: 491 RELERLQLPAQVAEILERTGLDPRRLELEVTESKLMRHAEMAILALNALRALGVTLAIDD 550 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +P + +K + S + G T +I R+II +A + ++A+ I Sbjct: 551 FGTGYSSLSYLKRLPLNRLKIDRSFIEGLTHDVNDDSIARAIIALAHTLGLEVLAEGIEA 610 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954 L GC Q + P+ + LK Sbjct: 611 REQANFLFGEGCLQGQGYLYSRPMIAEELAATWLK 645 >gi|297194219|ref|ZP_06911617.1| sensory box/GGDEF family protein [Streptomyces pristinaespiralis ATCC 25486] gi|197722525|gb|EDY66433.1| sensory box/GGDEF family protein [Streptomyces pristinaespiralis ATCC 25486] Length = 610 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 137/573 (23%), Positives = 265/573 (46%), Gaps = 24/573 (4%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 S+ A + + D ++ +A +LG + L + Sbjct: 31 RTASELRDYRAAFNAAQLAMAVVDHRGLVISANEALAALLGTRPTELRDRYAADLIDLAS 90 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + RR R + R++ D + W + + P+ +G +L + D Sbjct: 91 D--ARTWHAYREVLRGRRSRFRCTRRLKHPDGRALWAEVTVSPVP-ESGTVLLSVA---D 144 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN--LRPTVMVIDIDKY 576 I+++++ + D +T +PNR F +RLT L+ S D R + +D+D + Sbjct: 145 ISDRRELRARLRHLQMHDPVTRLPNRTLFFERLTAALESSPYDQGSTGRIGLCYLDLDGF 204 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLK-------FPDILARLSGNRFGIILISENNSLK 629 K +ND LG VGD +L ++ R+ E ++ARL G+ F I++ + + Sbjct: 205 KAVNDTLGHRVGDRLLAAVATRLAECADAGGPGHGGGHLVARLGGDEFAILVEDSTGTEQ 264 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 +AD A ++ ++ P +L + ++V+ASIG S +++ +++ A+ +Y AK G Sbjct: 265 LADLARSVLAALQEPFDLAGQRLSVSASIGVVERAVSGTSATGLMQAADTTLYWAKEDGK 324 Query: 690 NHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + F + L AVE E L Y P++ + D G+EAL++W+HP Sbjct: 325 SRWTLFDPERNAHRMTRQALSSMLRPAVERGEFTLEYQPLVGMADGVTRGVEALVRWNHP 384 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLL 806 ++G ++ + F+ IAEE I + ++L R W+ PP+F+ +N+A + + Sbjct: 385 QFGTLTPNRFVAIAEEDGSIVQLGQWVLRTACRQARQWQLDHPDVPPLFVSVNVAVRQVW 444 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D++L + ++++T ++L +ES VMG+ R L L +G+ + +DDFGT Sbjct: 445 DSDLVADVAEILAETGLPAHLLQLELTESAVMGSAGRPLQALQALSDMGVHIAIDDFGTG 504 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG------STEKRIAILRSIIPMAKNIETTIIAKDIYG 920 S L+YL +P +K +G+ + G + I+++++ +A + T+ A+ + Sbjct: 505 YSNLAYLSRLPVSVLKLDGTFVRGFQDEAHANPADETIVQALVELAHRLGLTVTAECVET 564 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L R+GCD Q + +G + I ++L Sbjct: 565 SGQASRLRRIGCDTGQGWLYSRAVGPDRIAEML 597 >gi|296105837|ref|YP_003617537.1| sensory box protein, GGDEF family protein, LssE [Legionella pneumophila 2300/99 Alcoy] gi|295647738|gb|ADG23585.1| sensory box protein, GGDEF family protein, LssE [Legionella pneumophila 2300/99 Alcoy] Length = 741 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 145/626 (23%), Positives = 279/626 (44%), Gaps = 27/626 (4%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 W + + D+I + + ++ +H + Sbjct: 123 WESTVNTLGLSDNLLVLKKPFDVIAVRQLASALTQKWVLARETQKHTEFLNQLVEERTES 182 Query: 404 GER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-----GSMHGPIRNWLP 454 ++ + S D + D+ V + + + + ++ Sbjct: 183 LQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIIKKETSEPQLIQYMS 242 Query: 455 --YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 ++ + ++ Y FR + + + +P + Sbjct: 243 TQLLNSEQHAQHVKEFSIHIDDSSMQI-YHFR----NGKV--VECCSKPHR-VGLQTVGR 294 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + DITEQ + E + A D LT +PNR +DR+ + A ++ ++ D Sbjct: 295 VWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISGYARH-KMKFAILFFD 353 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K IND L GD +L ++ R+ L++ D LARL G+ F ++ S N+ +IA Sbjct: 354 LDRFKMINDSLSHEAGDQLLCAVAERLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAG 413 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + KS P ++ ER+I + SIG + + + T + +L NA++AMY AK RGGN Sbjct: 414 VAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQF 473 Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + + + ++ DL A+ + E +L+Y P + EI +EALI+W+HP+ G Sbjct: 474 SFYTEKLNKKTNQQFQLELDLQKAIVHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQKG 533 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 I +F+ AE +I I ++L + I +WR +P I + N+ASK L + Sbjct: 534 IILPLDFIPTAESSGLIVPIGEWVLRETCKQIGAWR-TMGLPEIRVACNVASKQLRQRDF 592 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 ++ L+ + P ++L +E+V++ + + + +L+ +G+ + LDDFGT S L Sbjct: 593 PAMVEDLLKEYSVEPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNSSL 650 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 + L + D++K + S + + AI+ +II +A+++ IIA+ + + +K L Sbjct: 651 NLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKFLK 710 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954 + C+ IQ ++ P+ I KLL+ Sbjct: 711 KRRCNDIQGFLMSKPIPPEEIEKLLQ 736 >gi|326203562|ref|ZP_08193426.1| diguanylate cyclase/phosphodiesterase [Clostridium papyrosolvens DSM 2782] gi|325986382|gb|EGD47214.1| diguanylate cyclase/phosphodiesterase [Clostridium papyrosolvens DSM 2782] Length = 856 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 119/434 (27%), Positives = 222/434 (51%), Gaps = 8/434 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 +S E A D LTG+PNR+S L+ +L+ + + ++ ID+D +K IND + Sbjct: 425 QSEEKYTYLALHDILTGLPNRRSLLEDSDRLLE---GNSGKKLALLFIDMDNFKYINDTM 481 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD+++ ++R+ LK IL RLSG+ F +++ N K +F + +S Sbjct: 482 GHEFGDELINKASQRLKTALKDFGILYRLSGDEFILLIHDIENKFKAEEFMCQILESFKD 541 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 + + +T SIG A + +++K A++AMY AK +G N + ++ Sbjct: 542 EFEIRNSVLHITFSIGAALYPDHGNRIEDLIKCADIAMYKAKEQGKNRYVLYDKDMDKAF 601 Query: 704 --RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 R++I++ L A+E E + Y P + +++ GLEAL++W + GN+S +F+ +A Sbjct: 602 SERMIIEKLLHTAMEKGEFEVHYQPQFDIQTQKVTGLEALLRWKSSELGNVSPVKFIPVA 661 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I + ++L + I D+ + + +NI++ +L + + + +I Sbjct: 662 EDTHLIIPLGEWVLNQACIFIKELHDKGLK-DLTVSVNISTIQILQSGFTQKIIDIIDSY 720 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 +P I+L +E++++ + L +L+ +GI + LDDFG S L+YL +P T+ Sbjct: 721 KLNPECIELEITETILIESFTTVLKKLNKLKGMGIRIALDDFGKGYSSLNYLKQLPISTL 780 Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + + E+ I R II + +++ TIIA+ + ++ L + CD IQ Sbjct: 781 KIDKSFIDSVSTDEEGRTITRHIITLGRSLGMTIIAEGVEYTEQLEYLKKYNCDRIQGYL 840 Query: 940 VASPLGFNSILKLL 953 + PL + KLL Sbjct: 841 FSKPLPGEEVKKLL 854 >gi|330501559|ref|YP_004378428.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] gi|328915845|gb|AEB56676.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01] Length = 901 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 154/576 (26%), Positives = 275/576 (47%), Gaps = 21/576 (3%) Query: 395 YFSQGIFSDGER--------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446 F+Q + + +R AV S D P I +S + Sbjct: 326 QFAQVLINQEKRSVTHALYLFQRAVEQSASAFLLVDRDGRVEYVNPSFTAITLYSSDEVC 385 Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 G + LP + + + DS + Q EFR R + + +W + I + + Sbjct: 386 GHRLSELPAL--ANLSDLLFDTDSSLAE-HSSWQGEFRSRRKNQEPYWGHLSISKVYGDD 442 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 G++ YIGI DITE K + + I A+ DNLT + NR SF+ L A Sbjct: 443 GELTHYIGIYEDITEAKLAQQRIERLAYTDNLTNLGNRPSFIRSLEE---RFARHTQQSL 499 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++++DID +K+IND LG GD +L +L RR+ L LAR + N F I+L + Sbjct: 500 GLLLVDIDNFKRINDSLGHQTGDKLLSALARRLRNSLGAKGTLARFASNEFAILLDGC-D 558 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A + +++ P+ + + I++T S+G A ++K+A LA++ AK Sbjct: 559 QDSGLRVAHQVLQTLDKPLFVDNQLISITGSVGLAIAPDHGDDPQTLMKHAGLALHKAKA 618 Query: 687 RGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G + V+ F ++ + ++ ++ +L A+ +EL + Y P + L +++G+EAL++W Sbjct: 619 NGKHQVQLFTEVLNAEANYKLFVENNLRRALTQNELEVFYQPKLCLKSGQLLGMEALLRW 678 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G I +F+ +AEE +I I +++ + R + M + + IN++ K Sbjct: 679 QHPEKGMIRPDQFIGVAEETGLIIPIGKWVVRQACR-MSKQIAAIGMGELQVAINLSPKQ 737 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 D +L + A++ + P ++L +ES+++ + +R LGRL+ +G++L +DDFG Sbjct: 738 FSDPDLVGSIAAILHEEQLDPRLLELELTESLLLEATDDTRHQLGRLKSLGLTLAMDDFG 797 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL P D +K + S + + + I ++I MA N++ ++A+ I Sbjct: 798 TGYSSLSYLKKFPIDVIKIDRSFIKDIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETGA 857 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + L R CD Q P+ ++ L+ R+P Sbjct: 858 QLGFLRRQRCDVGQGYLFDKPIPGRELIDSLR-RYP 892 >gi|254447138|ref|ZP_05060605.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [gamma proteobacterium HTCC5015] gi|198263277|gb|EDY87555.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [gamma proteobacterium HTCC5015] Length = 716 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 137/667 (20%), Positives = 272/667 (40%), Gaps = 15/667 (2%) Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359 + + + + L +++ IP + ++ Sbjct: 48 AALQAVQDNADIGLVLLDLMMPGMSGYEVCAQLVNNPETQDIPVIAVTGGGYVQNEALEK 107 Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY--FSQGIFSDGERQSLAVLGSGDI 417 L I V + + + ++ + ER + Sbjct: 108 SFLAGAIDYIPKPINEVELFARVKVAIQLYLERRLRKVSVAKTTENEERFRTIFHEAPIG 167 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-----RTILDSFV 472 + D T ++G+A+G + G + + + R L S + Sbjct: 168 IAQLDSDLKIATANVSFQHLVGVATGQLVG--CSVYDLLAEQEASAASEGSARDQLGSLL 225 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + RV + + + ++ + G YI IA +ITE+K+ + + Sbjct: 226 AGSKTSAEVALRVEGREPVWVNLFLKA-LLQQGYGAENSYILIAENITEKKQVSDHVHEI 284 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A+ DNLTG NR F D + + + + + V+++D+D +K IND LG VGD++L Sbjct: 285 AYHDNLTGGANRARFQDEVARAIAHAEKASS-QFAVLILDLDYFKTINDSLGHEVGDEML 343 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + R + E ++ D+LARL G+ FG++L + A + + PI + E Sbjct: 344 KEVARTLQECIRDSDLLARLGGDEFGLLLPRVRSPQDACTVAQKVLNRMQEPICIENHEF 403 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KED 710 ASIG + + + ++++A+ AMY AK G + + F S R+ + ++D Sbjct: 404 YAGASIGISFYPQDGESMQGLMRSADTAMYRAKELGRQNYQLFNPSMDRNVERRLDLEQD 463 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L ++ E YLVY P + + GLEAL++W HP G ++ F+ +AEE +I + Sbjct: 464 LRRGIKEDEFYLVYQPQVDASVNRVTGLEALVRWKHPSKGTLAPHHFLELAEETGLILML 523 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++ + + W D P + + +N++ + ++L + + + Sbjct: 524 GDRLIRQAIKQSKQWLDAGMDPHVVVSVNLSLRQFQQHDLVRRLAQYLEDAQLPSKNFGI 583 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-- 888 +ES+ + L R++G+ + LDDFG S L++L Y P D +K + S + Sbjct: 584 EVTESINALDKSLVIAALDNFRQMGLQIALDDFGMGYSSLNHLRYFPLDALKVDRSFIVQ 643 Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + IL++II + + ++A+ + + + + MG IQ + + PL + Sbjct: 644 ATESPVGRDILQTIIQLGNTLGLKVVAEGVETDEQHQLVQSMGGAAIQGYYYSPPLEAEA 703 Query: 949 ILKLLKE 955 ++ L Sbjct: 704 VIDWLNS 710 >gi|148257311|ref|YP_001241896.1| PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146409484|gb|ABQ37990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Bradyrhizobium sp. BTAi1] Length = 913 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 144/651 (22%), Positives = 268/651 (41%), Gaps = 20/651 (3%) Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 + ++A++ + + A ++ I + + + R Sbjct: 261 TLVPTSSVATVAALLLIVVTMLLSWPHLSAARRALLVGILSITIEVVALILHDRFALVFD 320 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 L LV + T + + G S ER ++ GD + D + Sbjct: 321 TALLQIALV---AYLAATALDEIDFRGLLRHVAESRFERIAM---SIGDGLVCTDKDKHI 374 Query: 428 VTTTPDIATILGLASGSMHGPIRNWL--PYIHINDR-DNFRTILDSFVGYRRGRLQYEFR 484 P I G + + G L +D L + + +++E R Sbjct: 375 TVWNPGAVAIFGYGAEEIIGQPFARLRADRSDTDDLFPQQEAALPAPLLPGGATVEFEGR 434 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 D + + + ++G I DI+ +K+ E I A D LTG+ NR Sbjct: 435 --RKDGEVFPVEASVSAWQGADGLQYGVI--LRDISVRKREAERIRYLAEHDTLTGLINR 490 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 + L +++ + R ++VI +D ++ IND+LG A GD VL + R+ + Sbjct: 491 NTLQTELAAMIETADA-GADRLVLLVIGLDGFQHINDMLGHAFGDSVLRAAAERLRSEIG 549 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 +ARLSG+ F + + S +A+ A + P+ R+ V ++G A Sbjct: 550 SMGCVARLSGDEFAVAIPSSAIGGTVAELAEHVSHLFETPLEAAARQQRVKITLGVAVHP 609 Query: 665 SSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722 ++ E+L NA LA+ AK RG + + + R+ ++ +L LAVE E L Sbjct: 610 DGGQSADELLSNAHLALCRAKTDRRGSHMIFEPAIRQELERRLTLEAELALAVERREFEL 669 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P + L ++G EALI+W HP G + +F+ + + +A+ +++ R Sbjct: 670 FYQPQVDLSSGRVIGAEALIRWRHPTRGLVPPGDFIPVVNTSPLSEAVATWVMATACRQA 729 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W+ + I + IN++ +L + L++ T SP I+L +E +++ + Sbjct: 730 REWQLAGHE--IRVGINLSPSQFQSGDLAAFVSKLLTVTGVSPGLIELEVTEDILLHDEP 787 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900 RL+ +G+SL DDFGT + LSYL P D +K + S + + AI+ Sbjct: 788 GVLQTFNRLQALGVSLVFDDFGTGYASLSYLKKFPLDGLKIDRSFVRDVLTQADDAAIVG 847 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 S + +++ + ++IA+ I + L +GC++ Q H P+ + Sbjct: 848 STVSLSRQLNLSVIAEGIENQATADFLLALGCEHGQGYHFGKPMPAADFER 898 >gi|326317526|ref|YP_004235198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374362|gb|ADX46631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 934 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 136/598 (22%), Positives = 261/598 (43%), Gaps = 24/598 (4%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGY-FSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 AL L I + T Q LA + + + + + D++++ D Sbjct: 334 WLGALFSVLAGWFIAMQATGHQRALALAQSMTSELRTARDNLEGILQAVPDLLFELDAGG 393 Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 + + +S + G + + + F L + L ++ Sbjct: 394 RIHYHRSARSDLSAESSQAFEGRMLD--EVLPPGVASEFMQALHEA-ESQGVSLGRQYHQ 450 Query: 486 RAADNQFHWMIIRIRPMSNSNGDI------LRYIGIANDITEQKKSLEGILCNAFQDNLT 539 Q W + + D RY+ +A DIT ++ + + A+ D LT Sbjct: 451 ETPMGQ-FWFELSVARRRGVGADAGEGGAASRYVALARDITARRDAEAAMHRMAYYDALT 509 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR+ ++L LD + + ID+D +K++ND G A GD +LV + RR+ Sbjct: 510 GLPNRRLLFEQLQAALDQA-RSGGRIGALFFIDLDNFKQLNDARGHAAGDRLLVQVARRL 568 Query: 600 GELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITV 654 LL+ + R+ G+ F +++ N A +R+ + P +L +V Sbjct: 569 ERLLQGFGSVVRIGGDEFVVLIPRIANGMQAGVDAAGAMAARLREGMEAPYDLGSTYYSV 628 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712 TAS G + + T ++L+ A+ AMY AK G + V F +R+ +++DL Sbjct: 629 TASTGVTLFPKAGETVEDLLREADTAMYRAKSSGAHRVRFFEADMQAAAQERLSLEQDLA 688 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+ + L + HP + D + G E L++W HP GN+S + F+ IAEE +I + Sbjct: 689 QAIADDALEIHIHPQVD-RDGAVCGGELLLRWRHPAHGNVSPARFVAIAEESGLILRLGA 747 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++ R + + I +N++++ ++ ++ ++ + SR+ L Sbjct: 748 RVIRRACDALAQLHAAGLD--MTISVNVSARQFRQDDFVAYVRDALAYSGAPASRLILEV 805 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +E++++ N + + + L + G+ ++DDFGT S L+YL +P +K + S + + Sbjct: 806 TETLLVENWQDTAQRMAELVRFGVRFSIDDFGTGYSSLAYLKRLPLYELKIDRSFVQDAP 865 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 AI+R+I+ MA+++ ++A+ + + L R GCD +Q A PL Sbjct: 866 VNPNDAAIVRAILSMAQHLRLRVVAEGVETATQAEFLARHGCDAMQGYLYAHPLPLKE 923 >gi|256787549|ref|ZP_05525980.1| hypothetical protein SlivT_23940 [Streptomyces lividans TK24] Length = 605 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 135/582 (23%), Positives = 258/582 (44%), Gaps = 37/582 (6%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D V+ + T+LG ++ G + L + + Sbjct: 8 YRSVFTTAPLAMAVVDAEGLVVSANDTLGTLLGTDPDALAGSVAADLVDLASD--AGTWH 65 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL-------RYIGIANDI 519 + R RL+ R++ AD W + + P++ G + D+ Sbjct: 66 AYREVLRGHRPRLRCTRRLKRADGHSLWAQVTVEPLAGPGGSGGSGDGDAPGLLLSVADV 125 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYK 577 + +++ + D +T +PNR F +RLT L+ R V +D+D +K Sbjct: 126 SARRELQARLRHLQMHDPVTRLPNRALFFERLTAALEAESYEHGGTGRIGVCYLDLDGFK 185 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRFGIILISENNSLKI 630 +ND G VGD +L ++ R+ + ++ARL G+ F +++ + ++ Sbjct: 186 AVNDTHGHRVGDRLLAAVAERLTRCAEEAAHARSGAPLVARLGGDEFALLVEDSTGTDQL 245 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 AD A A+ ++ P L +R ++VTAS+G ++ T + +++ A+ +Y AK G Sbjct: 246 ADLAGAVLAALQPPFELSDRRLSVTASVGVVERHTAGTTPTALMQAADTTLYWAKADGRA 305 Query: 691 HVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F + + L A+E E L Y P++ + D + G+EALI+W+HP+ Sbjct: 306 RWTLFDPERNANRMTRQALAATLRPAIERGEFALEYQPLVGMEDGRVRGVEALIRWNHPQ 365 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLD 807 +G ++ + F+ +AEE I + ++L W+ PPIF+ +N+A + + D Sbjct: 366 FGVLAPNRFIALAEEDGSIVPLGRWILRTACHQARRWQLAHPDEPPIFVSVNVAVRQVWD 425 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++L + + +T +P ++L +ES VMG+ R +L L +G+ + +DDFGT Sbjct: 426 SDLVADVARTLEETGLAPELLQLELTESAVMGSAGRPLQVLKALSDMGVHIAIDDFGTGY 485 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG----------------STEKRIAILRSIIPMAKNIET 911 S L+YL +P +K +G+ + G + I+ +++ +A + Sbjct: 486 SNLAYLSRLPVSVLKLDGAFVRGFQYDAVSDAAACGAGGANPADEVIVEAMVQLAHRLGL 545 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 T+ A+ + L R+GCD Q + P+ + I LL Sbjct: 546 TVTAECVETSAQATRLRRIGCDTGQGWLYSRPVAPDRISALL 587 >gi|6759486|emb|CAB69812.1| YkoW protein [Bacillus cereus ATCC 14579] Length = 892 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 175/819 (21%), Positives = 336/819 (41%), Gaps = 70/819 (8%) Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260 ++ I L + + + A+ + ++ YI + GF K + S + L + I Sbjct: 78 VMEITLFLSSLSIHDQSIFSYKALPFFIIQYILLFVGFAIKFIKNYSIKGLSQFSFDSIF 137 Query: 261 LSSSLIIFLFMY---LHWNRWHAKVGYITFSGIACIAILFCMS-------FYYPMVTASI 310 + I F + L R K +I +++ Y A I Sbjct: 138 IIIMNIYFTLTFILDLSSFRMLTKDTWILIGYFIAQSLVIYAVISLYRREQYSSSRIALI 197 Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 T+ + Y F + GMK LI ++ I + + K + ++ Sbjct: 198 IGFTIILVYGYIHLFQLNFGMKTSAEINYLIHTASILLIGLSSILYILDKPMQHETKTKY 257 Query: 371 LVGGLVLIVI-------------------------------------------------L 381 V ++ Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHT 317 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q + + +R D V+ ++ + ++ Sbjct: 318 YEQLTTQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--T 375 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + + +I D + + L R L E R + + ++++ I + P Sbjct: 376 AYYCEVASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 N +++ GIA DIT + + + AF D LTG+PNR+ F L IL+ + T+ Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTN 492 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 N V+ +D+D++KKIND LG +GD +L+ + +R+ L+ DI+AR G+ F I+L Sbjct: 493 AN-DVAVIFLDLDRFKKINDRLGHELGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A + + P + E+++T SIG A + +E++KNA++AM Sbjct: 552 PEMYSEKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAM 611 Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N F +++ ++ +L A++ +E +L Y P + ++I+G E Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HPK G +S ++F+ +AEE I + ++L + W +Q + + +N Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVN 730 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ +L + ++ +T P + + +ES+ + + L +L+ +GI ++ Sbjct: 731 LSVVQFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL P +T+K + G + AI+ SII ++K + +IA+ Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLEVIAEG 850 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + E + + L + CD+IQ ++ P+ + LL ++ Sbjct: 851 VETEEEWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 889 >gi|148358488|ref|YP_001249695.1| GGDEF domain-containing sensory box protein [Legionella pneumophila str. Corby] gi|148280261|gb|ABQ54349.1| sensory box protein, GGDEF family protein, LssE [Legionella pneumophila str. Corby] Length = 741 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 145/626 (23%), Positives = 279/626 (44%), Gaps = 27/626 (4%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 W + + D+I + + ++ +H + Sbjct: 123 WESTVNTLGLSDNLLVLKKPFDVIAVRQLASALTQKWVLARETQKHTEFLNQLVEERTES 182 Query: 404 GER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-----GSMHGPIRNWLP 454 ++ + S D + D+ V + + + + ++ Sbjct: 183 LQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIIKKETSEPQLIQYMS 242 Query: 455 --YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 ++ + ++ Y FR + + + +P + Sbjct: 243 TQLLNSEQHAQHVKEFSIHIDDSSMQI-YHFR----NGKV--VECCSKPHR-VGLQTVGR 294 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + DITEQ + E + A D LT +PNR +DR+ + A ++ ++ D Sbjct: 295 VWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISGYARH-KMKFAILFFD 353 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K IND L GD +L ++ R+ L++ D LARL G+ F ++ S N+ +IA Sbjct: 354 LDRFKMINDSLSHEAGDQLLCAVAERLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAG 413 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + KS P ++ ER+I + SIG + + + T + +L NA++AMY AK RGGN Sbjct: 414 VAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQF 473 Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + + + ++ DL A+ + E +L+Y P + EI +EALI+W+HP+ G Sbjct: 474 SFYTEKLNKKTNQQFQLELDLQKAIVHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQKG 533 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 I +F+ AE +I I ++L + I +WR +P I + N+ASK L + Sbjct: 534 IILPLDFIPTAESSGLIVPIGEWVLRETCKQIGAWR-TMGLPEIRVACNVASKQLRQRDF 592 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 ++ L+ + P ++L +E+V++ + + + +L+ +G+ + LDDFGT S L Sbjct: 593 PAMVEDLLKEYSVEPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNSSL 650 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 + L + D++K + S + + AI+ +II +A+++ IIA+ + + +K L Sbjct: 651 NLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKFLK 710 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954 + C+ IQ ++ P+ I KLL+ Sbjct: 711 KRRCNDIQGFLMSKPIPPEEIEKLLQ 736 >gi|27381235|ref|NP_772764.1| hypothetical protein bll6124 [Bradyrhizobium japonicum USDA 110] gi|27354402|dbj|BAC51389.1| bll6124 [Bradyrhizobium japonicum USDA 110] Length = 917 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 144/673 (21%), Positives = 278/673 (41%), Gaps = 21/673 (3%) Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 + L ++ + + + + ++ + Sbjct: 256 ALAAESILQHRMLRWTSDAGMILGLGVICLLMMYSWRRFASGYRV----AVLIAAGAAVE 311 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 + + I+ + + + G + S R ++++ G Sbjct: 312 LTAALVQARWPFVVDTSLFHIAIIAYLTAIALDEIDFRGLLGRIAESRFHRIAMSL---G 368 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFV 472 D + D P + I G + G + L + D R + R + Sbjct: 369 DGLVCTDEDHRITVWNPGASVIFGYMPAEIIGRPFDTLCAV-PTDGDARPSMRDAARQAL 427 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 G + EF R + + + ++G +Y I DI+ +K+ +E + Sbjct: 428 LVPGGAVVVEFEGRRKNGETFPVEASFSGWQGTDG--FQYGAILRDISVRKREVERVRYL 485 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 A D LTG+ NR LT ++ + + ++V+ +D +++IN++LG + GD VL Sbjct: 486 AEHDALTGLANRNMLHAGLTGLIAAAERRSS-DVALLVLGLDGFQQINNMLGHSAGDLVL 544 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 S+ R+ + ++ARLSG+ F I L I FA + ++ P+ R+ Sbjct: 545 QSVAERLRAEIAGKAVVARLSGDEFAIALDCAEAGEPIVAFAERIARAFEAPLVTGTRQH 604 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKED 710 V SIG A + + ++L N LA+ AK RG + + + +R+ ++ + Sbjct: 605 RVRISIGVAVYPDGGHNADDLLSNGHLALSRAKATRRGSHVIFESAIRQELQNRLTLESE 664 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L LA + E L Y P +RL+D +VG EALI+W HP G +S EFM + + + I Sbjct: 665 LALAADRGEFELFYQPQVRLVDGGLVGAEALIRWRHPVRGYVSPGEFMPVVNTSALSERI 724 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 +++E R +W + + + + IN++ L +L AL+ T +P+ ++L Sbjct: 725 ANWVMETACRQARAW--ELSGNSVRVAINLSPSQLQSGDLAHAAAALLGATGLTPALLEL 782 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +E +++ + R + R++++G+ + DDFGT + LSYL P D +K + S + Sbjct: 783 EVTEDILLHDEGRVLDMFKRIQELGVRVLFDDFGTGYASLSYLKKFPLDGLKIDRSFVLD 842 Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 AI+ S I ++K + T++A+ I L MGC+ Q P+ ++ Sbjct: 843 LLADSDDAAIVSSTIGLSKQLGLTVVAEGIENRATADFLVSMGCEEGQGYFFGRPMPADA 902 Query: 949 ILK-LLKERFPLV 960 + L + + Sbjct: 903 FERQFLTQPRSVT 915 >gi|262368645|ref|ZP_06061974.1| signal transduction protein [Acinetobacter johnsonii SH046] gi|262316323|gb|EEY97361.1| signal transduction protein [Acinetobacter johnsonii SH046] Length = 958 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 136/564 (24%), Positives = 273/564 (48%), Gaps = 13/564 (2%) Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 S+ ER LA + + ++ D + P + G + ++G + + Sbjct: 391 SNQERLRLAASVLEQAEQGIFILDEDLRYIDVNPFFERLAGFDAAHINGK--HLFDIV-A 447 Query: 459 NDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 N + + RT + +G+ + G E + + + + + +++ + YIGI Sbjct: 448 NYKSHQRTTHNQIIGHLLKNGEYDGELNEKFLSGKELCIWMHLNAITDEQNRVTHYIGIV 507 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +D+TE+K + + D LT +PNR + +L L +S D + ++ ++ID++ Sbjct: 508 SDLTERKLQEQRLSYLENYDTLTDLPNRFYYNYQLHQYL-VSQQDSIKQLAIIRLNIDRF 566 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 + +N+ L GD++L + +R+ ++A L+G+ F I+ + + + Sbjct: 567 RPLNEFLSNNGGDELLRQVAQRLRLTNAEALMVAHLNGDDFAIVYEVSHIRPSVQEHIDR 626 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + K+ ++P ++ +E +T S+G + + + AE A+ AK GGN + + Sbjct: 627 INKAFSLPFDIFGQEHIITLSMGISQYPEHGRQLDYLNNCAEQALSEAKRLGGNATKLYS 686 Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 +S+ + + ++ DL LA++N+EL + Y P I +++I G EAL++W+HP G + Sbjct: 687 LSNTVALEEGIYLERDLRLAIQNNELVVYYQPKINFHNQKIYGFEALVRWNHPTKGIVPP 746 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AE+ +I I ++ + A+ I W I + +N+ ++ L +L + + Sbjct: 747 GLFIPMAEKTSLISDIGRIVILQTAKQIKEWNKLGFD-NICVSVNVVAQQLQRGQLLKDL 805 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + + S S ++L +ES ++ N E + LL ++ GI ++LDDFGT S LSYL Sbjct: 806 DEALDRYKISGSSLELEITESTLVENSEAVKNLLETIKLRGIHISLDDFGTGYSSLSYLT 865 Query: 875 YIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P DT+K + S ++ K+ AI+ ++I M K + T++A+ I E + L + CD Sbjct: 866 DFPIDTLKIDRSFISKIGHYKQEAIVSAMIAMGKAMGMTVVAEGIETEQQLSYLQNLECD 925 Query: 934 YIQDSHVASPLGFNSILKLLKERF 957 Q + PL + L++ Sbjct: 926 IAQGYLFSKPLPQLDATQYLRDHL 949 Score = 80.4 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 50/357 (14%), Positives = 110/357 (30%), Gaps = 23/357 (6%) Query: 193 GIIIGVASLLAIFLTIFYMVNRSSML-----IPTFAMAWVVLGYISIDFGFLSKLV--NL 245 + ++ F+ + + + A W+ +SI + ++ Sbjct: 51 SFYFNLWFFISEFILSIFWLVNTVYFNPKNHSAKHAHRWIQGICLSIGLLVAAGVICIYY 110 Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305 L + L S+L++ + + ++ Y I I F Sbjct: 111 YLPSLSGNFNYTNALLLSALLVIVTQTVCLTYLTQRISYFCLVFIPSITPYVLSQFINFD 170 Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL------IFIWFIGLWMAIT 359 ++ + + I++ + L I L W L + Sbjct: 171 ANHTLFHLAVNFILIVILLCANATNRINQHLSRLSIKNRELKKEAEKQVAWTDDLCKQLQ 230 Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 ++ + ++ V + ++ + + E SLA +G W Sbjct: 231 NEVNKSKEIKQQLQLNNQLL---EQKVRERTFDVNQINKDLKNKQEDLSLAHAIAGIRPW 287 Query: 420 DWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 DW+I + T +L ++ IH ND F++ + S + Sbjct: 288 DWNIKDRLIALTNHKQEKVLKNSTE----HQLQLQYLIHPNDIAPFKSAMKSHLRGHSDH 343 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKKSLEGILCNA 533 +RV+ + +++W+ R +S L +GI DI +K + E + A Sbjct: 344 YDATYRVQHNNGKWYWVHDTGRVISRDPTTQKPLHMVGIRRDIQHEKSNQERLRLAA 400 >gi|330831674|ref|YP_004394626.1| GGDEF/EAL domain-containing protein [Aeromonas veronii B565] gi|328806810|gb|AEB52009.1| GGDEF/EAL domain protein [Aeromonas veronii B565] Length = 848 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 141/575 (24%), Positives = 268/575 (46%), Gaps = 21/575 (3%) Query: 389 HVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 +++ + E+ L + + D ++ P I G +S + Sbjct: 275 YLMVLLENIDPLKRHAEQLKLSHRVYDNLSEAILVCDADSRIISVNPAFEQITGYSSDEV 334 Query: 446 HGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 G + L +H D+ + + + R G + E + + + + + I + Sbjct: 335 RGQRPSMLKSGLH--DQTFYADMYHAL--ERVGVWRGEVWNKRKNGKLYPQQLMISTLR- 389 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 G I +YI I +D+++ K + + I A DNLT +PNR F LT + Sbjct: 390 EAGKIQQYIAIFSDLSQTKVAEQKIATQANYDNLTSLPNRWLFGRCLTRFCER-----GE 444 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 R +MV+D++ +K +N+ + GD +L ++ R+ ++ D++AR+ G+ F ++ Sbjct: 445 RFALMVLDLNNFKAVNNSMDHHAGDALLREVSDRLVSRVRTEDLVARIGGDEFAFLVPGI 504 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + FA + S A P L + + VTA+IG S E+L+NAE A++ A Sbjct: 505 VTRRQAEVFAKQVIGSFARPFMLANQHLYVTATIGMTLCPVDGSESDELLRNAEQALFAA 564 Query: 685 KHRGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 K +G + R +++DL A++ +L + Y PI + LEAL++ Sbjct: 565 KRQGRLLGAYCSSMREEVRQRHQMQQDLAEAIKLEQLTMAYQPIWDNRSGRVAKLEALVR 624 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP WG +S +EF+ +AEE +I+ + +L + RD+ + Q+ P + + IN ++ Sbjct: 625 WYHPHWGQVSPAEFIPLAEEAGLIQGLGALVLWQSCRDLARLQ-QSGFPDLQMSINRSTM 683 Query: 804 DLL--DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + D E E ++ +I P+ I + +ES++M + ++ R+ + LR+ G L +D Sbjct: 684 EFQTIDPEASEWLK-VIQHFGLDPADIVIEITESLLMESSDQHRVRIDALREAGCKLAID 742 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL P D VK + S + E+ +L II + N+ ++ + + Sbjct: 743 DFGTGYSALNYLRTFPVDLVKIDRSFVRHIPFNEQDRMLLDGIINIVHNLGMQVVIEGVE 802 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L + GC + Q ++ PL ++ + + L+ Sbjct: 803 TREQLNFLCQKGCAFTQGYLLSRPLAYDDLTEYLQ 837 Score = 79.6 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 3/167 (1%) Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 +L ++ ++ Q + + + + D+ + P Sbjct: 139 VMGLLRLLGPLAGRELALMLQRQLPQLLPDTPHVLQSMLFQAPVGIGKLDLTGRILWANP 198 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 I +LG + + + H D + R E R + Sbjct: 199 AIEKMLGYPLDELLHRSISDIN--HPEDWQRSLECYEEIRRGERSSFTQEKRYFCKGGEI 256 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNL 538 W + + + + + + +I K+ E L + DNL Sbjct: 257 LWGRVTVTLIRDEQQQPDYLMVLLENIDPLKRHAEQLKLSHRVYDNL 303 >gi|228911188|ref|ZP_04074993.1| Sensory box protein [Bacillus thuringiensis IBL 200] gi|228848364|gb|EEM93213.1| Sensory box protein [Bacillus thuringiensis IBL 200] Length = 735 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 144/562 (25%), Positives = 271/562 (48%), Gaps = 11/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R D V+ ++ + ++ + + + +I Sbjct: 178 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 235 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + L + L E R + + ++++ I + P N +++ GIA D Sbjct: 236 KDHELLKRALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 292 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT + + + AF D LTG+PNR+ F L IL+ + T+ N V+ +D+D++KK Sbjct: 293 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKK 351 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L+ + R+ L+ D++AR G+ F I+L + A + Sbjct: 352 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 411 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + E+++T SIG A + +E++KNA++AMY AK G N F Sbjct: 412 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 471 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +++ ++ +L A++ +E +L Y P + +EI+G EALI+W HPK G +S ++ Sbjct: 472 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKEIIGFEALIRWKHPKLGIVSPAQ 531 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I + ++L + W +Q + + +N++ +L + Sbjct: 532 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 590 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL Sbjct: 591 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 650 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + G + AI+ SII ++K + +IA+ + E + + L R CD+ Sbjct: 651 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 710 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ + LL ++ Sbjct: 711 IQGFFISKPVSSKDVWMLLHKK 732 >gi|209885851|ref|YP_002289708.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans OM5] gi|209874047|gb|ACI93843.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans OM5] Length = 825 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 158/774 (20%), Positives = 303/774 (39%), Gaps = 51/774 (6%) Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSM-LIPTFAMAWVVLGYISIDFGFLSKLVNLPS 247 TL G++ G F+ + + T M + + + GF++ + + Sbjct: 50 TLAAGLVCGCGVWSTHFIGMLAYSPGVPITFDFTMTMVSFAVAVVMMTAGFVAAIYGERT 109 Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 L+ IA+S V + I + L +S +V Sbjct: 110 WSSLVGGVIVGIAISVMH------------HLGIVALRMSADIVWMPDLLVLSAVCGIVF 157 Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367 ++++ T+ I + + +I + I I ++ Sbjct: 158 STLSLFTVRQGTAITHSGIAAALLATATLSDHIIAVSAIGLIPDINTVSDEAGLSPI-VL 216 Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 ++ +V IVI I + + ++ + A+ + + Sbjct: 217 SISVASMMVAIVIACLIGAISDRRSRRHMNERNIQ----LNAAIQNIMQGLCMFGPDNCL 272 Query: 428 VTTTPDIATILGLASGSMH--GPIRNWLP-------YIHINDRDNFRTILDSFVGYRRGR 478 ++ +A + + + D + DS R Sbjct: 273 QLWNDKYVSMYRIAPEDIRVGATVEELFAARKKAGTIVKELDF-YSTRLWDSVKNRESAR 331 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 E D + + + NG ++G DITEQ+KS I A D+L Sbjct: 332 WVLEL----VDGRTISVAYQAM----ENG---GWVGTHEDITEQRKSEARIQYLAQHDSL 380 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+ NR +F D + + +A + T++ +DID++ +IND G + GD L RR Sbjct: 381 TGLFNRVAFNDHVRKVWQKAAAQKH-PFTILSLDIDRFSEINDTYGHSTGDAFLREAARR 439 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + +ARL G+ F I+ + D + + M N+ I ++ Sbjct: 440 LQAA-CGSAFIARLGGDEFMIVSSEGEQPARAGDICTRVLTAFEMMFNIDGHAIHSGCTV 498 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716 G + + ++ NA +A+Y AK RG + ++ ++ DL L +E Sbjct: 499 GVSIYPQDGEDIETLISNAGVALYRAKKEERGSIRFFEPEMDRQLREKRVMLHDLDLVLE 558 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 N +L L + P D G EAL++W HP+ G + F+ +AEE I AI+ ++L Sbjct: 559 NKQLELHFQPQADP-DGTPFGFEALVRWRHPEKGLVPPGVFVPLAEETGAIVAIDEWILR 617 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 + ++ SW P+ I IN++ N+L + +++ +T +P R+++ +E V Sbjct: 618 KACQEAASWPK-----PLSIAINVSPMSFQHNDLPGLIHSILLETGLNPKRLEIEITEGV 672 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894 ++ + R+ +L R++ +G+ + +DDFGT S LSYL PFD +K + + + + Sbjct: 673 LVQDFSRACSILRRIKNLGVRVAMDDFGTGYSSLSYLQSFPFDKIKIDQAFVAQINKNVQ 732 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 AI+R+II + + + +IA+ + E+ L GC +Q + P + Sbjct: 733 SSAIIRAIISLGEALNLGVIAEGVETELQRDFLADAGCFEMQGYLIGRPQPIAA 786 >gi|221066625|ref|ZP_03542730.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] gi|220711648|gb|EED67016.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] Length = 1045 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 122/612 (19%), Positives = 253/612 (41%), Gaps = 51/612 (8%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 ++Q + Q ++ + + D+ V + + G G Sbjct: 427 VLVQDISGRKRLEQMERLGHQQLRSLMQRLPVGLVMEDLDGRLVYWNEEFLRLAGY-GGK 485 Query: 445 MHGPIRNWLPYIHIN--DRDNFRTILD-------SFVGYRRGRLQ--------------- 480 + W + + +R+ + RR + Sbjct: 486 PSVSTQQWWERMFPDTAERERVIQRWQVAKAQASRILQLRRSEHERVDGQDAPWDELATE 545 Query: 481 --------YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 +R D + + ++ + + D +++ + + + Sbjct: 546 AAACTVSAQTLMLRGLDGLRRPVAVSAVLQAD------GCLMVLQDQSQRMAAEQEVRRL 599 Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 AF D LTG+PNR+ DRL L ++ + V+++DID +K N+ G+ GD +L Sbjct: 600 AFYDALTGLPNRRLLADRLQQALAMAQRKAHF-GGVVLLDIDNFKAFNEAYGLDQGDLLL 658 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPINL 647 S+++RI LL +AR G+ F +++ + ++ A + PI + Sbjct: 659 QSMSQRIRGLLPSGATIARQGGDDFVLLIEDLGGDSVAAAARLEQQADQWLNRLREPIEI 718 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRV 705 ++T S+G + + ++T E+ + AE+AMY AK +G N F +R Sbjct: 719 GGVLRSITVSMGLSLFGEPELTGEEVQRRAEMAMYQAKSQGRNVSCFFDPQLQSALQERR 778 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 +++D+ ++ E L Y P + +++G E L++W HP+ G + + F+ +AEE Sbjct: 779 TLEQDMRAGLQAGEFELFYQPQV--EMGKVIGAEGLLRWKHPEKGFVPPAHFIPLAEETG 836 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I + ++L + + W + + +N++ K + E + +++ Sbjct: 837 VILPLGDWVLRAACQQLAKWAKHPRYAQLVLSVNVSPKQFHQSGFVEQVLKALAEHGADA 896 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 R+KL +E +++ + + + + RL+ GI +LDDFGT S LSYL +P D +K + Sbjct: 897 RRLKLELTEGMLVADVDDTIAKMMRLKSYGIGFSLDDFGTGYSSLSYLKRLPLDQLKIDR 956 Query: 886 SLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + + AI R+I+ +AK++ +IA+ + + + L + C Q ++ P Sbjct: 957 SFVRDVLTDPNDAAIARTIVALAKSLGLHVIAEGVETQAQCRFLEGIRCYAWQGYLMSPP 1016 Query: 944 LGFNSILKLLKE 955 + L+ Sbjct: 1017 VPVGEFEGLVTN 1028 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 7/190 (3%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF--TVIQHVLATGYFSQGIF 401 W L F + + + L ++ L+ GLVL + G+ + + +Q Sbjct: 258 WSLQFKPALSSQRRLERYLPWLVLAAGLLAGLVLAAWVSGWWQSRWSWSRRLKFSAQARQ 317 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 R + V + DI + +LG + +H R+ L + D Sbjct: 318 ESDARFHAMCEQAAMGVLELDIATRSVLKVNQHFCRLLGYEAQDIH--RRSVLELVMPED 375 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + +L+ + EF +R+ W+ + + R + DI+ Sbjct: 376 QAQCAQLLEGLDLQQFQHNAGEFCLRSKSGAPIWVELNA--FLTGRHESRRLQVLVQDIS 433 Query: 521 EQKKSLEGIL 530 +K+ + Sbjct: 434 GRKRLEQMER 443 >gi|167648745|ref|YP_001686408.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Caulobacter sp. K31] gi|167351175|gb|ABZ73910.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Caulobacter sp. K31] Length = 807 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 152/784 (19%), Positives = 301/784 (38%), Gaps = 49/784 (6%) Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAM--AWVVLGYISIDFGFLSKLVNLPSGELL---- 251 VA L+ S M + AW++L + G + Sbjct: 19 VAGLICFAACFTAFRLYSRMRGAKGVVRGAWLLLTGLVSGSGVWATHFVAMVAYDPGLKT 78 Query: 252 -IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310 + ++L S++ + + ++ I + + Sbjct: 79 GYSPTGTLLSLMISVMFMAGGFAVASAQRSRTNDFAGGLILGMGVAAMHYTGMSAFVTQG 138 Query: 311 ARIT---LASIVLYYTYFIIYHGMKGYERAVLLI----PAWILIFIWF----IGLWMAIT 359 + + ++ RA L+ +L IG+ Sbjct: 139 FVQWEQATIAASVLAGVIGATAALQLAGRARSLLKQIGGGVLLTLGVCSLHFIGMGAITI 198 Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI---FSDGERQSLAVLGSGD 416 + ++ G +L + + T + + G + S +R + + Sbjct: 199 VPDPAINVPDQMLSGAILTLAVTSITGMIILGGLGAVAIESSTSRSALDRIRRLANAAYE 258 Query: 417 IVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 + I + + G ++ G + L + + Sbjct: 259 GIVV--IQDGLINDANAAFCELAGAELDALVGAPLSNLLTFDGEAPSREGARREGALQPV 316 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR--YIGIANDITEQKKSLEGILCNA 533 G + + R M + + D+ E++ + E I A Sbjct: 317 DG------------GRQIPIEAFSRLMDDGARQETSGLTVLAVRDLRERRSAEEKIRYLA 364 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LTG+PNR S RL LD +++ ID+D +K+ ND+ G GD +LV Sbjct: 365 EHDGLTGLPNRNSLQTRLAAALDRVEASGE-SLSLICIDLDHFKEANDLHGHLAGDALLV 423 Query: 594 SLTRRIGELLKFPDILARLSGNRFGII-LISENNSLKIADFAIAMRKSIAMPINLLEREI 652 RR+ + + P ARL G+ F ++ + + + A+ A + +++A P +++ Sbjct: 424 ETARRLQDSVTAPSFAARLGGDEFIVVQVAAGDQPAAAAELAGHLLEALAAPAVYEGQDL 483 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710 + AS+G + + T+ +L NA++A+Y AK G F+ +R + + Sbjct: 484 VMGASLGVSLFPDDGRTAEALLANADMALYRAKESGRGAYRFFKREMDESIRERRTMARE 543 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L A+ + EL + Y P+ D + G EAL++W+HP G I EF+ +AEE +I + Sbjct: 544 LRQAIIDEELIVYYQPLATASDGVVCGFEALVRWNHPVRGMIPPLEFIPVAEENGLIGQL 603 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 ++L R D ++W P+ I +N++ L +L + + ++ +T SP R++L Sbjct: 604 GEWVLRRACADAVTWER-----PLRIAVNLSPLQLNQPDLPKLVHEVLVQTGLSPKRLEL 658 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ES + + +R+ L RL+ +G+ + +DDFGT S LS L PFD +K + S + Sbjct: 659 EITESALFKDYQRALDNLRRLKALGVRIAMDDFGTGFSSLSTLQSFPFDKIKIDKSFVEN 718 Query: 891 STEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 A I+R+++ + +++E +A+ + + I L C +Q + P ++ Sbjct: 719 IHRHDRATVIVRAVLGLGRSLEIPCVAEGVETQEQIDFLRGEDCAELQGYAIGRPAPVDT 778 Query: 949 ILKL 952 + Sbjct: 779 LSAW 782 >gi|218680985|ref|ZP_03528882.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 894] Length = 501 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 272/501 (54%), Positives = 361/501 (72%), Gaps = 2/501 (0%) Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375 A IIY G Y+RA+LL+PAW L +W G W+ +T RLDNDIIQPAL GGL Sbjct: 1 ALTAATGLLLIIYLGFNRYDRAILLVPAWALTLVWLFGAWLTVTGRLDNDIIQPALGGGL 60 Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435 VLIV+LIGFTV+QH A G F QG+FSD ERQSLA+ GSGD+VWDWD+ RDRV T PD++ Sbjct: 61 VLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWDWDVARDRVVTIPDVS 120 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 LGL+ G+MHG RNWLP +H +DRD FR LD + +RRGRL +EFR+RA D FHW+ Sbjct: 121 VKLGLSPGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLNHEFRIRAEDGHFHWL 180 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 +IR RP+ SNG+I+R +G D+TEQK S+E +L +A DNLTG+PNRQ FLDRL ++L Sbjct: 181 LIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLHDALHDNLTGLPNRQVFLDRLQSVL 240 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 L+ + LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ LLK D LARL+G+ Sbjct: 241 ALAPGGETLRPTVMVIDIDRYKLVNDALGVAAGDNILIALTRRLRRLLKPQDTLARLAGD 300 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 +FG+IL+SE+N K+ADFA A+ K+I +PIN REI +TAS+G ASW + +++ +L Sbjct: 301 QFGLILVSEHNPAKVADFADAISKAIMVPINFANREIILTASVGLASWVDRQESATGLLS 360 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 +AELAMY AK GGN VE F+ + DR+ ++ DL A+E EL +VY PI RL D Sbjct: 361 DAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERKELSMVYQPIARLEDV 420 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 E+ G EAL++W+HPK GNI SEF+ IAE +I + +F LE+ D++SW++Q P Sbjct: 421 EVAGFEALMRWEHPKRGNIPPSEFIPIAEASDLIGPLGMFALEQATNDLMSWQNQTGELP 480 Query: 794 IFILINIASKDLLDNELCEGM 814 IF+ IN++S LL+NEL + + Sbjct: 481 IFVSINLSSVQLLNNELYDDV 501 >gi|330811467|ref|YP_004355929.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379575|gb|AEA70925.1| Putative response regulator, PleD/VieA family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 624 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 120/491 (24%), Positives = 239/491 (48%), Gaps = 14/491 (2%) Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 D + ++ E R A+ + W + + + + I E+ + L Sbjct: 135 DQLLILKKPFDTLEIRQMASAMTWKWQL--------AQDAARKMRSLERTIEERVQELLK 186 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + D LT +PN DRLT + D + VM I +D++K+IN+ LG VG Sbjct: 187 VSHLLQYDVLTELPNSMLLGDRLTQAMAQCRRHDR-QLAVMFIGLDRFKRINNALGHPVG 245 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D++L + R + +++ D + R + F ++L + + A + +I+ P + Sbjct: 246 DEMLKRVARALATVVRESDSVFRYGSDEFVVVLGDVVDPQQTKGVADKLLAAISSPQPID 305 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706 +++VTAS+G + + + + ++K AE AM + K G N F ++ + Sbjct: 306 GHDLSVTASLGISVYPTDGFDAVALIKKAETAMRNVKETGPNDYRFFTEDMNRRARQQQT 365 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 I+ L L ++ E L Y P + L ++VG+EAL++WD P G + S+F+ +AE+ + Sbjct: 366 IESGLRLGLQRKEFVLHYQPKLDLKSGKVVGVEALVRWDRPDHGLVYPSDFIPVAEDSGL 425 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I ++ ++L+ + W+ Q M P+++ +N+++ D EG+ + +T +P+ Sbjct: 426 IVPLSQWVLQEACQQACRWQAQ-GMRPLYLSVNVSAIDFRQRGFVEGIARTLKETGLAPT 484 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 +++L +ESV+M N + + +L ++++GI L +DDFGT S LSYL P D +K + S Sbjct: 485 QLELEITESVLMQNVDTTVAILKAIKQLGIRLAIDDFGTGYSSLSYLQKFPVDVLKIDQS 544 Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + ++ +II + K++ IIA+ + ++ L + C+ +Q + + + Sbjct: 545 FVGDLSIDSNDAKLVSTIISLGKSLNLHIIAEGVETLEQLEFLKKHQCEEVQGYYFSKAV 604 Query: 945 GFNSILKLLKE 955 + + E Sbjct: 605 EPQAFADWMTE 615 >gi|145301131|ref|YP_001143972.1| GGDEF/EAL domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142853903|gb|ABO92224.1| GGDEF/EAL domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 848 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 140/564 (24%), Positives = 266/564 (47%), Gaps = 21/564 (3%) Query: 400 IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455 + E+ L + + D ++ P I G + + G + L Sbjct: 286 LKRHAEQLKLSHRVYDNLSEAILVCDADSRIISVNPAFEQITGYSGEEVCGQRPSMLKSG 345 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 +H D+ + + + R G + E + + + + + I + G I +YIGI Sbjct: 346 LH--DQAFYADMYHAL--ERVGVWRGEVWNKRKNGKLYPQQLMISTLR-EGGKISQYIGI 400 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 +D+++ K + + I A DNLTG+PNR F LT + R +MV+D++ Sbjct: 401 FSDLSQTKLAEQKIAAQANYDNLTGLPNRWLFGRCLTRFCER-----GERFALMVLDLNN 455 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +N+ + GD +L ++ R+ ++ D++AR+ G+ F ++ N + FA Sbjct: 456 FKAVNNSMDHHAGDALLREVSDRLVSRVRTEDLVARIGGDEFAFLVPGIVNRRQAEVFAK 515 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVES 694 + A P L + + VTA+IG + S E+L+NAE A++ AK +G Sbjct: 516 QVIGGFARPFMLANQHLYVTATIGITLCPGDGVESDELLRNAEQALFAAKRQGRLLGSYC 575 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R +++DL A++ +L + Y PI + LEAL++W HP WG +S Sbjct: 576 ASMREEVRQRHQMQQDLAEAIKLEQLTMAYQPIWDNRSGRVAKLEALVRWYHPHWGQVSP 635 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELCE 812 ++F+ +AEE +I+ + +L + RD+ + Q+ P + + IN ++ + D E E Sbjct: 636 ADFIPLAEEAGLIQGLGALVLWQSCRDLARLQ-QSGFPDLQMSINRSTLEFQTIDPEASE 694 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ +I P I + +ES++M ++ R+ + LR+ G L +DDFGT S L+Y Sbjct: 695 WLK-VIHHFGLDPCDIVIEITESLLMETSDQHRVRIDALREAGCKLAIDDFGTGYSALNY 753 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D VK + + + E+ +L II + N+ ++ + + + L + Sbjct: 754 LRNFPVDLVKIDRAFVRHIPFNEQDRLLLDGIINIVHNLGMQVVIEGVETREQLNFLCQK 813 Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954 GC + Q ++ PL ++ +++ L+ Sbjct: 814 GCAFTQGFLLSRPLAYDDLVEYLQ 837 Score = 81.5 bits (200), Expect = 7e-13, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 6/167 (3%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTP 432 V+ ++ + + LA + Q + S E + + + D+ + T P Sbjct: 139 VMGLLRLLAPLAGRELALMFQQQPVQSQPEYHHFLHTMMSHAPVGIGKLDLDGKILWTNP 198 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492 I +LG + + L H D + R E R D Q Sbjct: 199 AIEKMLGYSQSELLHRTAAELN--HPEDWLRSVSCYAELKRGERTAFTQEKRYLHRDGQV 256 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNL 538 W + + + + + + + +I K+ E L + DNL Sbjct: 257 LWGRVTVTLVRDEHLQPDYLMVVLENIDPLKRHAEQLKLSHRVYDNL 303 >gi|332306730|ref|YP_004434581.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174059|gb|AEE23313.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 797 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 147/518 (28%), Positives = 241/518 (46%), Gaps = 17/518 (3%) Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 W ++ + + + GR+ F + + P Sbjct: 270 EDISTHPYWAAWVDLATQAQLGACWSQPIKAANGRVLGTFAIYHS--------KAATPTK 321 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + I + +A+ E++KS + I A D LT +PNR + L LD + + Sbjct: 322 DELARIEMFANVASIAIERQKSSDLIWHQANFDELTQLPNRNIMGEHLKKALDAAKRN-K 380 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + VM +D+D +K IND LG VGD +L+ +RI ++ D +ARL G+ F IIL Sbjct: 381 TQVAVMFLDLDNFKDINDTLGHGVGDALLIDCAKRISGCVRHKDTVARLGGDEFVIILND 440 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + A + K+I P +L + +ASIG + + +LKNA+ AMY Sbjct: 441 ITEFSGLEKTAQKILKAIEQPYHLQSEIVHSSASIGITIYPDDAEDVASLLKNADQAMYG 500 Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G N+ + S R+ + DL A+E+ EL+LVY PI+ + + I EAL Sbjct: 501 AKDIGKNNYHYYTKSMRNAALKRMTLITDLRHAIEHDELFLVYQPIVNMTNGRINKAEAL 560 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W HP G I +F+ IAEE +I I+ ++ +R+ RD + WR P + + IN + Sbjct: 561 IRWQHPTRGVICPDDFIPIAEETGLIIDISNWVFDRVCRDAMFWRK-TLCPDLQLSINTS 619 Query: 802 SKDLLDNE--LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 D + + + ++ ++ + P I L +E+++M L + R+ G+ + Sbjct: 620 PIHYTDPDRCITQWLERMLV-SRTPPQAITLEITENLLMDANASVSNKLFQFRQAGVDIA 678 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S +SYL P D +K + S + +E + +II MAK + +IA+ Sbjct: 679 LDDFGTGYSSISYLKKYPTDFLKIDKSFVHSMSEVSNDKVLCEAIIVMAKKLGIEVIAEG 738 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I E L +MGC+Y Q PL + LL++ Sbjct: 739 IETEEQHYILQKMGCEYGQGYLFFKPLKYEDFNALLEK 776 >gi|226952620|ref|ZP_03823084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acinetobacter sp. ATCC 27244] gi|226836700|gb|EEH69083.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acinetobacter sp. ATCC 27244] Length = 745 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 137/565 (24%), Positives = 254/565 (44%), Gaps = 16/565 (2%) Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---P 454 D ER L + + ++ D + + P I L + G + Sbjct: 187 RKDQERLKLSASVFEQASEGIFILDENFNYIEVNPKYEQITELDKQVILGKQLFEITKQN 246 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H NF+ + + + + EF+ + ++ + I + + ++ YIG Sbjct: 247 KLH---HQNFQLSILDTLAHE-HEYEGEFQETYHSEKSCFLWMHINAVKDEQDRVINYIG 302 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +D TE+K + + D LT +PNR + +L L A V+ ++ID Sbjct: 303 IVSDQTERKHQEQRLSYLTNYDTLTDLPNRFYYQQQLHQYLVNEAAIQ--HLAVIRLNID 360 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +++ +N+++ G+++L + +R+ ++A LS + F II I Sbjct: 361 RFRTLNELVSNQAGNELLKQVAQRLRISNIDALLVAHLSADDFAIIYEMSPLHPPIHQLC 420 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ + P + ++E V+ SIG A + + +AE A+ AK GGN + Sbjct: 421 NNIVENFSQPFYIADQEYFVSVSIGVAMFPEHGRQVDNLNTHAEQALNEAKRLGGNTIRY 480 Query: 695 FRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + ++ DL A++N+EL + Y P + D + G EALI+W+HP G I Sbjct: 481 YSNERANLAAQYSDLELDLRKAIQNNELVVYYQPKMTTHDNLVNGFEALIRWEHPSKGLI 540 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AE +I I F+L + A+ + W + P + I +NI + +L +L Sbjct: 541 MPDIFIPLAESTSLISDIGQFVLHQAAKQLQRWIE-LGYPQVHIAVNIVVQQVLRGQLLH 599 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++S+ S ++L +ES + N E + +L L+ IS+ LDDFGT S L+Y Sbjct: 600 DVDTILSQYKISGHNLELEITESAFLENTETVKTVLEALKDRHISIALDDFGTGYSSLAY 659 Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 L P DT+K + + ++ + AI+ ++I M K I ++A+ + E L + Sbjct: 660 LTEYPIDTLKIDRAFISKIGNSKQDAIVNAMIAMGKTIGLKVVAEGVETEAQRDYLQKQN 719 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 CD +Q A PL K L++ Sbjct: 720 CDILQGYLFAKPLTALDATKFLQQH 744 Score = 86.2 bits (212), Expect = 3e-14, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 13/159 (8%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIAT 436 L+ V ++ + + + A +G W+W++ V T + + Sbjct: 46 LLEQKVRDRTYDLTQMNESLEEHRQNLAFAHETAGIRPWEWNLENQTVGVTNTHSQAVKR 105 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 +H +D + + L + R + +R++ + ++ W+ Sbjct: 106 -------DSENHYTLLHKIVHPDDIERVKNALYHHICGETLRYEETYRIKRPNGEWSWIH 158 Query: 497 IRIRPMSN--SNGDILRYIGIANDITEQKKSLEGILCNA 533 + + + LR +GI DI +++K E + +A Sbjct: 159 DVGQVIQRHPEDQTPLRMVGIHRDINQERKDQERLKLSA 197 >gi|330721536|gb|EGG99571.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [gamma proteobacterium IMCC2047] Length = 513 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 139/481 (28%), Positives = 235/481 (48%), Gaps = 15/481 (3%) Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 + + + G L I DITE+KK + I A+ D+LT +PNR+ Sbjct: 24 QTKSGYEFPVEVAAS-FFTYEGQEL-CILSVKDITERKKQEDVIQHLAYHDSLTNLPNRR 81 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 DRL L + ++L V+ ID+D +KKIND G + GD VL +L RI L+ Sbjct: 82 LLQDRLQQALVSANRHNHL-GAVLFIDLDNFKKINDSEGHSGGDQVLKTLAWRITNHLRA 140 Query: 606 PDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 D +AR+ G+ F ++L + + D A + + PI ++ + VTASIG Sbjct: 141 EDTVARIGGDEFVVLLPFLSTDASVARQRAEDLANKLLGLVTRPIQTNKQPLQVTASIGV 200 Query: 661 ASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVEN 717 ++ + + +++ A+ AMY AK G N V F++S ++ L A+EN Sbjct: 201 VNFPGNAKNDAEKLISFADTAMYKAKQNGRNGVVYFQMSMANDVTRKINLESRLRSALEN 260 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 EL+L + P +++VG E L++WD P +G IS +EF+ I E +I I +++ + Sbjct: 261 KELFLNFQPQY-KGLQQLVGAEVLLRWDAPTFGLISPAEFVPILESSGLIIEIGEWVMRQ 319 Query: 778 IARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 + W D + + +NI+ + + + + A++ +T P ++ +E Sbjct: 320 ACYQLKHWIDMNLWDSGLTLAVNISPVEFEQSGFVDQVAAILKETGVPPQYLENEITEGT 379 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 V+ N E+ LG LR +G+ +++DDFGT S L+YL +P D VK + S + E Sbjct: 380 VINNIEQIIETLGALRTLGVKISIDDFGTGYSSLTYLKRLPIDMVKIDQSFVKDIPGDES 439 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 AI+ +II M +++ +IA+ I I+ L GC Q + SP+ +LL Sbjct: 440 AGAIINTIISMVEHLNLDVIAEGIESIEQIQYLEASGCQKFQGFYFHSPMLEIEFTQLLS 499 Query: 955 E 955 + Sbjct: 500 D 500 >gi|254563338|ref|YP_003070433.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254270616|emb|CAX26619.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with PAS sensor [Methylobacterium extorquens DM4] Length = 817 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 150/755 (19%), Positives = 280/755 (37%), Gaps = 36/755 (4%) Query: 219 IPTFAMAWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWN 276 W + + F L I A + ++ + L Sbjct: 55 FVFGCSVWSLHFVAMLAFQPGAQAAYGLLPTAASIGIAVAGALIAFLIWCRADHDPLKVA 114 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + A + L + G R Sbjct: 115 AAGLVLATAISGMHYAGVGAMAANSLLAFEEALVHASLGLCATLAVIALARAGDLAGLGR 174 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQ 388 + + L M + L + L+ + + + Sbjct: 175 RIEVSLWLALAICGLHFTGMTALTVAPAAPVAGGGAVLGSTQLGLAVGLVSLAVLAAGLT 234 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +L + + + R L + ++++ V + G + + G Sbjct: 235 ALLMQQHLMRRRMDELSRMRLLGNLAHEVLF-IHREGRVVEINQAGLRLFGAPASEIIGR 293 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L D L + EF VR A + + R + + G Sbjct: 294 P--LLDLFAEADAPVL---LRRSRCHPEDLFPEEFEVRTAAGIAVPVELTCRAI-DYLGR 347 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + + ++ +++ I A D LT +PNR +RL L+ +A + + Sbjct: 348 PATAVALRD-LSRRRRDEARIRHLALHDALTDLPNRTLLEERLGLALENAAEN-GTSVAL 405 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +D+D++K +ND G A GD +LV +R+ L+ D LAR+ G+ F I+L Sbjct: 406 AYLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRTLA 465 Query: 629 KIADFAIAMRKSIAMPINLLER--------EITVTASIGFASWTSSKITSSEMLKNAELA 680 ++A+ A + ++ P + + + + AS+G A + S T+ + + A+ A Sbjct: 466 QVAETAERLVAALGRPFQIEGQIGGSVEGLRVEIGASVGIALYPSDGSTAESLKRAADTA 525 Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y K G V F + R ++ +L A+ EL L Y PI+ EI Sbjct: 526 LYRVKDEGRGAVRFFEAAMDEQLQARRRVEHELSGAIARGELALDYQPIVNGRTGEIEIF 585 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + ++F+ +AE+ I I ++L+ +W P + + Sbjct: 586 EALIRWHHPERGCVFPADFIPLAEQTDQIGRIGAWVLDTACAAAAAWP-----HPWRVSV 640 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ K G+ A++ + SP R+ L +ESV + + + +L LR +G+ L Sbjct: 641 NVSPKQFRQPGFAAGVAAVLGRHGLSPGRLVLEITESVFIHDAATALTVLTALRTLGVRL 700 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 LDDFGT S LSYL FD +K + S + G + I+R+I + N+ T+ + Sbjct: 701 ALDDFGTGYSSLSYLQRFQFDKIKVDRSFVRGLGQHADALTIVRAITHLGHNLGLTVTVE 760 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + + L +GCD +Q A P ++ + Sbjct: 761 GVETQEQLTVLRELGCDQMQGYLFARPAPMTNLSE 795 >gi|239787687|emb|CAX84195.1| Predicted signal transduction protein [uncultured bacterium] Length = 557 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 130/540 (24%), Positives = 248/540 (45%), Gaps = 31/540 (5%) Query: 425 RDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 + G+ + G W + IL + E Sbjct: 26 GRIIKVNRAFEKTTGMTLSLVKGRNFKELWTEPL----------ILADGLTLGGPPQSGE 75 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ---DNLT 539 R+ + I + + + R + + +D+ E +A + D LT Sbjct: 76 ARLEKPGGEIKHFSINLTLQEGES-EP-RLLAVLHDL-------EDTEGSATKVGLDALT 126 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR F DR L + ++++ +D++ +ND G GD +L ++ R+ Sbjct: 127 GLPNRHLFHDRAEQNLLNARRAAK-SVAMLLVGLDRFSVLNDAFGHPGGDLLLKEVSERL 185 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 + ++ D ARL+ + FG++L A + KS+ P ++ +RE+ +TASIG Sbjct: 186 KKCVRGSDTAARLTSDMFGLVLP-IAAVDDSVIVAEKVLKSLREPFHIGDREVVLTASIG 244 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVEN 717 + + T+ ++KNA+ AM+HAK +G + + + ++ R+ +++ L A+ Sbjct: 245 ISIHPTDADTADHLMKNADSAMHHAKAKGRDQYQFYAGEMNEKARKRLDLEQRLRRALVA 304 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E L Y P I++ + + G+EALI+W P G IS ++F+ +AEE +I I ++L Sbjct: 305 GEFVLYYQPKIKIDADSLTGMEALIRWIEPGRGMISPADFIPVAEESGLIGPIGHWVLAE 364 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R +W+D P+ + +N+++ D L + +Q ++ T P ++L +ES++ Sbjct: 365 ACRQNKAWQDMGLK-PLRVSVNVSAHQFRDQHLIDKVQQVLRDTGIDPCWLELELTESML 423 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKR 895 +G+ E+ + LR +G+ L++DDFGT S LSYL P T+K + + + + Sbjct: 424 VGDIEQVVSKMRDLRDLGLHLSIDDFGTGYSSLSYLARFPITTLKIDRAFVRDVETNPFT 483 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I R+II +++ + ++A+ + L GCD +Q + + PL L+E Sbjct: 484 AEIARAIIGLSRGLNLEVVAEGAELVEQVDFLRDNGCDMVQGFYFSKPLPPAEFEARLRE 543 >gi|146305610|ref|YP_001186075.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] gi|145573811|gb|ABP83343.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas mendocina ymp] Length = 907 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 158/623 (25%), Positives = 282/623 (45%), Gaps = 21/623 (3%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQG---IF 401 L + + I + + + G I F + A +Q Sbjct: 281 LGICSMLDASIRIEGEVVGVLCLEHVGGPRTWQADEIAFAGELADQFAQVLINQQKRHAT 340 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 S AV S D P I +S + G + LP + Sbjct: 341 SALHLFQRAVEQSASAFLLVDRDGRVEYVNPSFTAITLYSSDEVCGHRLSELPAL----- 395 Query: 462 DNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 N +L Q EFR R + + +W + I + +G++ YIGI D+ Sbjct: 396 ANLSDLLFDARSSLAEHSSWQGEFRSRRKNLEPYWGHLSISKVYGDDGELTHYIGIYEDV 455 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE K + + I A+ DNLT + NR +F+ L S ++++DID +K+I Sbjct: 456 TEAKLAQQRIERLAYTDNLTNLGNRPAFIRSLEERFAHSPR---PPLGLLLVDIDNFKRI 512 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG GD +L +L RR+ L LAR + N F I+L + A + + Sbjct: 513 NDSLGHQTGDKLLSALARRLRNSLGAKGTLARFASNEFAILLDGC-DQDCGLRVAHQVLQ 571 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697 ++ P+ + + I++T S+G A ++K+A LA++ AK G + V+ F Sbjct: 572 TLDKPLFVDNQLISITGSLGLALAPEHGDDPQTLMKHAGLALHKAKANGKHQVQLFTEAL 631 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 ++ + ++ ++ +L A+ SEL + Y P + L + +++G+EAL++W HP+ G I +F Sbjct: 632 NAEANYKLFVENNLRRALTQSELEVFYQPKLCLKNGQLLGMEALLRWHHPEKGMIRPDQF 691 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I I +++ + R + + + + IN++ K D +L + A+ Sbjct: 692 ISVAEETGLIIPIGKWVVRQACR-MSKQIAAIGLGELQVAINLSPKQFSDPDLVGSIAAI 750 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + P ++L +ES+++ E +R LGRL+ +G++L +DDFGT S LSYL P Sbjct: 751 LHEEQLDPRLLELELTESLLLEATEDTRHQLGRLKSLGLTLAMDDFGTGYSSLSYLKKFP 810 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + + + I ++I MA N++ ++A+ I + L R CD Sbjct: 811 IDVIKIDRSFIKDIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETGAQLGFLRRQKCDVG 870 Query: 936 QDSHVASPLGFNSILKLLKERFP 958 Q P+ ++ L+ R+P Sbjct: 871 QGYLFDKPIPGRELIDSLR-RYP 892 >gi|209964281|ref|YP_002297196.1| sensory box-containing diguanylate cyclase, putative [Rhodospirillum centenum SW] gi|209957747|gb|ACI98383.1| sensory box-containing diguanylate cyclase, putative [Rhodospirillum centenum SW] Length = 742 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 143/554 (25%), Positives = 256/554 (46%), Gaps = 11/554 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH-INDRDNF 464 + + V+ D+ P + ILG + ++ + + + DR Sbjct: 182 WRDLFENAVEGVFRMDLAGRLRAVNPALVDILGYGTADALMAAVPDGRALVAVPADRAEL 241 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R+ L R +E V+ AD W+ + +R + G+ Y G DI+ +++ Sbjct: 242 RSRLRGAGIVRG----FETMVQRADGDLIWVSLNLRRHLGAGGETSGYEGTLEDISHRRR 297 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + A D LTG+PNR +DRL L + V +ID D ++ +N+ LG Sbjct: 298 MEQEAAHVALHDGLTGLPNRTLLVDRLAQALRRRRAGQSPGFGVFLIDCDNFRMVNNTLG 357 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 A+GD +L + RR+ LL D LARL + F ++ A MR ++ P Sbjct: 358 HALGDRMLAEIARRLSRLLGAGDTLARLGSDDFAVLCEQSWTPDLALRRAEEMRLAVMAP 417 Query: 645 INL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702 + + ++ + S+ + T E+L++ +A+++AK RG SF + + Sbjct: 418 MEVPGHHDLFPSVSVAVVLDHGERETPDEVLRDLGIAVHYAKARGRARCISFEPAMRTAP 477 Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + ++ +L A+E E+ L P++ L ++G EAL +W HP G++S +EF+ IA Sbjct: 478 LQALRLQTELRRALERDEIGLALQPVVDLPGRRLIGFEALARWAHPGRGSVSPTEFIPIA 537 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I A+ +L + + SW+ + N P+ + +N++ L +L E + +I+ T Sbjct: 538 EESGLIVALGETVLRKACALLRSWQPRLNGTPLTVSVNVSPVQLARPDLFELVDGVIAAT 597 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 R+KL +E+ + + + L LR+ G + +DDFGT S LS L +PFD + Sbjct: 598 GVDVRRLKLEVTETALAQDLDIVSSRLDGLRQRGFRILIDDFGTGYSSLSRLHRLPFDGL 657 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + E I+R+++ + + I+A+ + +EL RMGC Q H Sbjct: 658 KVDQSFVRPMLHDEDCRNIVRTVVALGHALGVDIVAEGVEDPETGRELARMGCTSAQGYH 717 Query: 940 VASPLGFNSILKLL 953 PL +L+ Sbjct: 718 FGRPLSPADADRLV 731 >gi|90022222|ref|YP_528049.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] gi|89951822|gb|ABD81837.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] Length = 722 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 147/585 (25%), Positives = 266/585 (45%), Gaps = 37/585 (6%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDW----------------DIVRDR---VTTTPDIATIL 438 + + R + S D +W + D++ R +A I Sbjct: 149 RALRDSESRHRAFIASSADAIWAYELVPPVDISLPVNQQVDLIMRRALLTECNEKMARIY 208 Query: 439 GLAS-GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 G++ S+ G + + D F + EF + +M+ Sbjct: 209 GVSDITSVVGRPIYLNGSMSNKEDIRRFVLNNYRVEDH-------EFTRIDKFGELGYML 261 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + NG ++R G D+T+Q++ L+ + A D LT +PNR L +L Sbjct: 262 SSATGVI-ENGKLMRAWGSTRDVTDQRRYLDRMRYLANHDTLTSLPNRNLLYKELERVL- 319 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGN 615 S N + ++++D+D++K+IND LG GD VL L R+ EL P ++ARL G+ Sbjct: 320 -SNRSQNQKVALLLVDLDRFKEINDTLGHQAGDKVLKQLGPRLEVELGDTPGMVARLGGD 378 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F I+L + N A +IA +L + +SIG S +++ Sbjct: 379 EFAILLSNIRNRQHAVVTAHRFADAIAERFDLDTFSTELQSSIGVVICPDQAEDVSTLMR 438 Query: 676 NAELAMYHAKHRGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A++AMYHAK+ + + R+ + L A+ +L L Y P + L Sbjct: 439 YADVAMYHAKNNMKAVSIYDAEYDPNSAKRLTVTGALGRAIREEQLVLFYQPKVDLKTHR 498 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + G EALI+W HP+ G I S+F+ + E I + L++LE+ + WRD + Sbjct: 499 VYGFEALIRWIHPELGFIPPSDFVPMVELSSWIYPMTLWVLEQTIKQCAMWRDAGLD--L 556 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ ++L D+ + ++ L+ K +++ +ES++M +P R+ +L R+ K+ Sbjct: 557 TLAMNLSPRNLADDRIVNDLEVLLKKYNVRGGMLEMEITESMLMSDPNRASRILERINKL 616 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ L++DDFGT S L+YL +P T+K +GS + +E+ I++S I +A N+ Sbjct: 617 GVRLSIDDFGTGYSSLAYLKRLPVKTLKIDGSFIMNMLESEQDEIIVKSTIHLAHNLGLD 676 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++A+ + L + CD +Q ++A P+ S+ L + Sbjct: 677 VVAEGVETLEVYDRLNSLECDSVQGYYIAKPMPIESVGAWLADYQ 721 >gi|312958595|ref|ZP_07773115.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor [Pseudomonas fluorescens WH6] gi|311287138|gb|EFQ65699.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor [Pseudomonas fluorescens WH6] Length = 897 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 153/568 (26%), Positives = 274/568 (48%), Gaps = 17/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + + P I ++ +HG LP + Sbjct: 336 RRTATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYSAEEVHGHRLAQLPAL 395 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L + Q EF+ R + + +W + I + N ++ YIG Sbjct: 396 -----ENLSELLFDAPSSLAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 450 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID Sbjct: 451 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDSPISLLLVDID 507 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L LAR + N F ++L + + A Sbjct: 508 NFKRINDSLGHQTGDKLLISLARRLRNSLSTGGSLARFASNEFAVLL-DDTDLESGQQVA 566 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P+ + + I+VT S+G A +++NA LA++ AK G + V+ Sbjct: 567 SQLLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQV 626 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++G+EAL++W+HP+ G I Sbjct: 627 FTEALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMI 686 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I ++ + R + A M + + IN++ K D +L Sbjct: 687 RPDQFISVAEETGLIIPIGKWIARQACR-MSKRLSAAGMGNLQVAINLSPKQFSDPDLVA 745 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + A++ + + ++L +E +++ E +RL L +L+ G++L +DDFGT S LSY Sbjct: 746 SIAAILKEEDLPANLLELELTEGLLLEATEDTRLQLDQLKSFGLTLAMDDFGTGYSSLSY 805 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + S + + + I ++I MA N++ ++A+ I + L R Sbjct: 806 LKKFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETAEQLAFLRRH 865 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958 CD Q P+ +LK+LK R+P Sbjct: 866 RCDVGQGYLFDRPIPGAELLKMLK-RYP 892 >gi|302560492|ref|ZP_07312834.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000] gi|302478110|gb|EFL41203.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000] Length = 630 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 138/569 (24%), Positives = 262/569 (46%), Gaps = 27/569 (4%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D +A +LG ++ G + L + + Sbjct: 55 YRSVFTAAPLAMAVVDREGMVTGANAALAALLGHDQETLTGAVAADLVDLASD--ARTWH 112 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + RR RL+ R++ + W+ + + P+ +G + DI+++++ Sbjct: 113 AYRELLRGRRARLRCTRRLKHPEGHALWVRVTVSPLPADDG---GVLLSVADISDRRELR 169 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKINDVLG 584 + D +T +PNR F +RLT LD R + +D+D +K +ND LG Sbjct: 170 AELRHARMHDPVTRLPNRALFFERLTAALDAESYEESGTGRIGLCYLDLDGFKAVNDTLG 229 Query: 585 IAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAM 637 VGD +L ++ R+ + ++ARL G+ F +++ + ++AD A ++ Sbjct: 230 HRVGDRLLAAVAERLTRCAEAAGRTRTGTPLVARLGGDEFALLVEDSTGTEQLADLAESL 289 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 +I P +L R ++V+ASIG ++ T + +++ A+ +Y AK G + F Sbjct: 290 LDTIQAPFDLSGRRLSVSASIGVVERHAAGTTPTALMQAADTTLYWAKADGKSRWTLFDP 349 Query: 698 SSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 S R + L A++ E L Y P++ + D+ + G+EAL++W HP++G ++ + Sbjct: 350 ERNASRVTRQALASTLRPAIDRGEFALEYQPLVGMEDDRVHGVEALVRWHHPRFGTLTPN 409 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGM 814 F+ +AEE I + ++L R W+ PPIF+ +N+A + + D++L + Sbjct: 410 RFISLAEEDGSIVPLGRWVLRTACRQARDWQVAHPDEPPIFVSVNVAVRQVWDSDLVADV 469 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A + +T +P ++L +ES VMG+ R L L +G+ + +DDFGT S L+YL Sbjct: 470 AATLEETGLAPRLLQLELTESAVMGSSGRPIQALKALSDMGVRIAIDDFGTGYSNLAYLS 529 Query: 875 YIPFDTVKFNGSLMTG----------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 +P +K +GS + G I+ +++ +A + T+ A+ + Sbjct: 530 RLPVSVLKLDGSFVRGFQYEERAAAPPNPADEVIVEAMVQLAHRLGLTVTAECVETSAQA 589 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953 L R+GCD Q + P+ + I +LL Sbjct: 590 TRLRRIGCDTGQGWLYSRPVSPDRISELL 618 >gi|149182248|ref|ZP_01860728.1| sensory box/GGDEF family protein [Bacillus sp. SG-1] gi|148850017|gb|EDL64187.1| sensory box/GGDEF family protein [Bacillus sp. SG-1] Length = 793 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 149/777 (19%), Positives = 304/777 (39%), Gaps = 27/777 (3%) Query: 177 EPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236 + + + L + I+IG L + + F+ + L Sbjct: 31 QTESILNKIIKSDLLKAILIGATFFLTNLFVVLALDQPFRSTNHLFSYIVIYLLCCIAGS 90 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIA-CIAI 295 F +L + S + ++ ++ +LII + Y + + + + Sbjct: 91 YFALRLTDNRSLNMGMFVLGG---IAITLIILMANYTAILILFFHLLDVKPVMVIMTFLL 147 Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355 +SFY I+R + A + A + + L Sbjct: 148 AMAISFYSLRFLLQISREAENGDTSIWVSIGSI--------ATGVALAGLPYLVAISVLP 199 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 M + ++ L+L+ +L + + + + Sbjct: 200 MIDAELSQLNLYMLPYAVELLLVWVLSVIPDMFGEQRQLENLSKVEVSEQHFQSLFNHNP 259 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475 D V +D+ + ++ + G + + + + L+ F + Sbjct: 260 DAVISFDLQGNFLSANDGAEHLTGYKREELL--AMSLRDIVAS---RQLQKTLNQFELTK 314 Query: 476 RGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 G Q E + D ++ + P+ NG I IA DITE KK I Sbjct: 315 TGISQQSELSIIKKDQSVCYVSVTGVPIQTENG-IEGVYAIAKDITESKKQSNTIDYLFH 373 Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D+LTG+PNR+ F+ + + + + +D + + I D+ G VGD VL Sbjct: 374 YDDLTGLPNRRMFIFEVEKAV-----REKTPFAIYSLDYGRLRTIRDLFGFKVGDRVLKE 428 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 L+ R+ +L +++R G+ ++ + + + + K + + EI + Sbjct: 429 LSLRLLSVLPDGSVVSRFGGDEIYCLVPRVDGNNEFEPALEQLYKILDTSFFVEGHEIFM 488 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712 G + + + ++K A+ A ++ E ++ R ++++I+ +L Sbjct: 489 EMKAGISMFPENGEEPDLLIKCADTARASIPDNSFHNYEVYQNKLDRSTMEKIIIENELK 548 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+ EL L Y P + +VG EAL++W+HP+ G I F+ AE+ +I + Sbjct: 549 RAIGQDELVLYYQPKFNSTLKRLVGFEALVRWNHPEKGLIPPGLFIPAAEQTNLIVDLEG 608 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L R + W+ + + +NI+ + + E +Q ++++ S S ++ Sbjct: 609 WVLREACRQLYVWQSTELK-GLPVSVNISQRSFANPAFLENVQDILNEQKISASLLEFEI 667 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892 +ES+ M N + + L +L+ +GI ++LDDFGT S LSYL +P DT+K + S + T Sbjct: 668 TESMTMFNEKVTIEKLRQLKNLGIRISLDDFGTGYSSLSYLDKLPIDTIKIDKSFIDDMT 727 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + A++ +I+ +A + +IA+ + + + L +GC IQ + + PL I Sbjct: 728 TDQSAMVSTILSIALHNGLGVIAEGVELKEQVTLLQSLGCVNIQGYYFSRPLPPEEI 784 >gi|52144765|ref|YP_082063.1| sensory box/GGDEF family protein [Bacillus cereus E33L] gi|51978234|gb|AAU19784.1| sensory box/GGDEF family protein [Bacillus cereus E33L] Length = 689 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 121/549 (22%), Positives = 246/549 (44%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRNIPII-VNGEIVGVYIVTRDVTKQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L + + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NKKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ A +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPGIHLFREHDDQFVMLIENIT-KERVELVAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IKEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|172058717|ref|YP_001815177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Exiguobacterium sibiricum 255-15] gi|171991238|gb|ACB62160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Exiguobacterium sibiricum 255-15] Length = 878 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 160/792 (20%), Positives = 321/792 (40%), Gaps = 48/792 (6%) Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250 ++ V L+A I V ++ +L F +A V+ ++ + FL + + Sbjct: 104 IFYVLQSVFFLIAFIHLIHRHVTKNRLLSFIFDIAIVMTVAVTYSWYFLIRPLFDTPFAS 163 Query: 251 LIWRACSEI-----ALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305 + + +I ++ W+ + + A + + + Sbjct: 164 NAEVMLAFAYPLCDIVLLFCMISIYYLFEKKEWYER-RRLFQFLFAGLLLQVGADTLFVY 222 Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYER-------------------AVLLIPAWIL 346 +T + I + ++ G+ G+ L +P ++ Sbjct: 223 MTTVSGDNAIRLIDPLFILGLLMIGVSGHIVSPVDSKEDRQSKQRIKVQVGKLFLPYLLV 282 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV--ILIGFTVIQHVLATGYFSQGIFSDG 404 I ++ + A N ++ V L+++V IL+ + + + + + Sbjct: 283 ILLFLTMAFYARRDEALNGLMIGCAVTILLILVRQILMILSHQELIQEIHEKADELEVSE 342 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 ER D V+ D+ + P + + + G Sbjct: 343 ERYKSLFTYHPDAVYSLDLKGRIESANPSFEKLTEQHAEELVGKTYRQFT---------- 392 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + Q+E + + + + P+ + + GI DIT ++ Sbjct: 393 --TWQQTSTDKATAQQFETIFQKSGGPDVLLNVTNIPIRVRD-RFVGMYGIGQDITTIRE 449 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + I A+ D+LTG NR F + L +++ D+ + ID+D +K +ND G Sbjct: 450 NELKIRRLAYYDHLTGAINRTYFEEVLHHLIETEQADET--IVLCFIDLDDFKLVNDSFG 507 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 VGD +L+ + +R+ E + D++AR G+ F +IL + + + + + Sbjct: 508 HHVGDQLLIQVAKRLQEAAEPDDLVARQGGDEFTVILRNVTSDDQARCRTARLLDDLKRT 567 Query: 645 INLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESF-RVSSFRS 702 + E+ SIG S + +LK A+LAMY AK GG + F ++ S Sbjct: 568 YAIEGIELISNPSIGAVSCRRTSEKHVVTLLKQADLAMYQAKTGGGKSIIFFEDIAEKAS 627 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 R+ ++ +L +A+E ++L L Y P + + ++VG+E LI+W+HP+ G I+ ++F+ +AE Sbjct: 628 YRLRLESELPIAIETNQLILHYQPQVDTVTYKMVGVEGLIRWNHPELGMITPNDFIPMAE 687 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E MI + ++L W+D + + +N++ + + LI +T Sbjct: 688 EAGMIIRLGEWVLREGFLQAKQWQDDGLN--LKVGLNVSMQQFHHPTFVLTLIRLIEETK 745 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P+RI L +E + + E + L + RL+ +G ++++DDFGT S LS L P DT+K Sbjct: 746 VDPTRIDLEITEVSAVEDIEETVLTMNRLKDLGFTISIDDFGTGYSSLSRLADFPIDTLK 805 Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + +++ SII +AK++ +IA+ + + L R+ C +Q + Sbjct: 806 IPREFVEKIQPATTGYSMISSIIHLAKSLHLEVIAEGVETLEQVNVLNRLECSRMQGYYF 865 Query: 941 ASPLGFNSILKL 952 P+ I L Sbjct: 866 GRPMPAEQIPAL 877 >gi|218440067|ref|YP_002378396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] gi|218172795|gb|ACK71528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7424] Length = 839 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 130/570 (22%), Positives = 259/570 (45%), Gaps = 13/570 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLP 454 + ER V + + + D ++ I +LG + L Sbjct: 273 IESQLKFREERYEFLVEKASEGILLIDAQTKQIIDANLGICELLGYDHEEIINLNLYNLI 332 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 + DR+ + + + E R D + +I G + YI Sbjct: 333 AL---DREIIEAEFEQVIESSSDLID-ESLYRCQDGSLISVEAKINS-GQYRGKDIFYIS 387 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DIT++K+S E + AF D LT +PNR+ F +++ L+ + + L V+ +D+D Sbjct: 388 I-QDITDRKRSEEQMQYQAFHDPLTNLPNRKLFTQQVSLALNNAKKNQTL-LAVIFLDLD 445 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 + IN+ LG ++GD +L S +R+ + D +AR + F I+L N + + Sbjct: 446 SFNHINNTLGHSIGDQLLQSFAQRLISCIPAGDTIARWGSDDFTILLPRIKNIEETVKLS 505 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + + P + +++ V S+G A + +LKNA +A+ AK +G N+ + Sbjct: 506 EKIFEDLKQPFRIENQQLQVKISLGIAIYPQDGEDEESLLKNAAVALTKAKEQGRNNYQF 565 Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + +S+ + + ++ L A+E EL L Y P I++ E+ +EAL++W+ P+ G I Sbjct: 566 YTPLMSAQSALLLKLENALHRALERRELSLYYQPQIKISTGEVTAMEALLRWEVPEVGFI 625 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S + ++ +I I+ ++L+ ++W++ +P I I IN+++++ L E Sbjct: 626 SPIKLFSQGQKTDVILQISQWILQTACEQNLAWQE-LGLPSIPISINLSNREFEQQNLVE 684 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ KT P ++L +E+++ N + +R + +G+ L LDDFG+ S + Y Sbjct: 685 NVARVLQKTGLDPQWLELEITETILRKNLKSARQVFQDFYNLGVRLALDDFGSGFSSIGY 744 Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 PF TVK + S + A++ +++ + K ++A+ + ++ L + Sbjct: 745 FKLFPFRTVKIHQSFIRDLRGASQEMALISALLTLGKGFNLRVVAEGVETSSQLELLKSL 804 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLV 960 C+ +Q PL + L ++ L Sbjct: 805 QCEEVQGYVYTRPLKSAEATQFLTKQLSLT 834 >gi|297559152|ref|YP_003678126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843600|gb|ADH65620.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 901 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 154/797 (19%), Positives = 300/797 (37%), Gaps = 43/797 (5%) Query: 190 LYRGIIIGVASLLAIFLTIFY-------------MVNRSSMLIPTFAMAWVVLGYISIDF 236 + +G LA R A A + ++ + F Sbjct: 107 TALSLTLGDLFALAALPLFVIGFTKFAPWPGGLRTAVRHVTDSYVCAAAVFSVVWLLL-F 165 Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN--RWHAKVGYITFSGIACIA 294 L + + +G L + ++ +++ + R V IA Sbjct: 166 SPLYQELGEGAGFLGFALVYPVADIVVLCLLVPLVFMSPHSTRRAVLVAIGALIVIAGAD 225 Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI------- 347 IL ++ + + + + I L Sbjct: 226 ILGALTRLTGPPFLGGVEHPVRFLGFALLGALPWLVEHRPGTDPRRITGRGLYRFAPELA 285 Query: 348 ----FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + RL L G ++V+L+ + + S+ + + Sbjct: 286 AIGAVFAAAVVLTVAGVRLVGVAPVLPLAAGTAVVVLLVRMVGM--LEENATLSRMVRNR 343 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 SGD++ D +P A G + IH D Sbjct: 344 EVHFHELARNSGDVILVLDRDGGVNYVSPGTAEAFGYRLDDVLAAPVT--ALIHPEDLGR 401 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 + + D F + RVRAAD + + + G+ R + DI+ Q Sbjct: 402 TKAVTDLFSERGAQGVHMRLRVRAADGTWRHTESTMS-LYEQPGEPDRLLVTTRDISAQV 460 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKIND 581 + + F D +TG+PNR +R + +L + V+ +D+D + +ND Sbjct: 461 ALQDEVEHLTFHDGVTGLPNRAYLEERASDVLAHRVINEEPAGEVAVIFLDLDGFTAVND 520 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD +L RR+ + LAR G+ F +++ + ++ D A + + I Sbjct: 521 SAGHVRGDHLLGQAARRLRGEVDSDATLARWGGDEFAVLVENVPRVQRVVDLAERLGRVI 580 Query: 642 -AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P + +R+I +TASIG A + S E+L+NA++AM AK RG HVE + Sbjct: 581 ASEPFPVADRDIMLTASIGVA-FAEQVTDSGELLRNADVAMTRAKERGAGHVEVYAAHMH 639 Query: 701 RSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++ L A+ E +L Y P++ L ++ +EAL++W + +F+ Sbjct: 640 DTVVSRLELQIRLREALAKDEFFLEYQPVVDLGSSQVTSVEALVRW-DRDGERVGPEDFI 698 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 AEE +I + +L + WR + I + +N++ K +L E + ++ Sbjct: 699 GAAEESGLIVPLGERILREACEKVAVWR--LSDWDIGLSVNLSVKQVLSPRFVESVAGIL 756 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +++ + L E V++ + + LG LR++G+ L +DD+G + L++L + Sbjct: 757 AESGLPAEVLTLEVDEEVLLDDGGEAVQRLGELRELGVRLAIDDYGMGYASLAHLRRLSV 816 Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S + + +II + +++ ++A+ I +++L MGCD+ Q Sbjct: 817 DAIKIDPSFVADLGRDDTVTLLTHTIIQLGRDLGVQVVAEGIERSEQLEQLRAMGCDHGQ 876 Query: 937 DSHVASPLGFNSILKLL 953 VA P+ + + L+ Sbjct: 877 GFLVARPMPASGVESLV 893 >gi|196046791|ref|ZP_03114013.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|229182881|ref|ZP_04310115.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] gi|196022326|gb|EDX61011.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108] gi|228600595|gb|EEK58181.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1] Length = 689 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 123/549 (22%), Positives = 249/549 (45%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNNFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ FA +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K S Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|229042402|ref|ZP_04190150.1| Sensory box/GGDEF [Bacillus cereus AH676] gi|228726949|gb|EEL78158.1| Sensory box/GGDEF [Bacillus cereus AH676] Length = 689 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 119/550 (21%), Positives = 252/550 (45%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIK-KEYVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQS 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 P+ + + Sbjct: 677 PISKYDMENM 686 >gi|256822275|ref|YP_003146238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256795814|gb|ACV26470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Kangiella koreensis DSM 16069] Length = 861 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 130/564 (23%), Positives = 257/564 (45%), Gaps = 12/564 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + ++ + +++ + + + A GL + Sbjct: 292 QIRRKTADLADKTDQIKQIINLVPHMIYATNANGELILANRYAADFFGLHLKELDNINIE 351 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 L D F D + ++ + ++ ++ + ++ I P + Sbjct: 352 QLRLKAPTASDLFEDE-DYLLRKDAVAVEKQLKLNDSNGKATYLTISKVPFVGRYSRLPA 410 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + D+TE K+ + I A D+LTG+PNR DR+ L LS + ++ I Sbjct: 411 VVTVGVDVTETKQFEQQIQHMAQHDSLTGLPNRLLLNDRINQSLALSLRHHH-NGALLFI 469 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL--- 628 D+D +K IND LG GD +L+ + +R+ + ++ D +ARL G+ F I L ++ Sbjct: 470 DLDFFKNINDSLGHMTGDKLLIEVAKRLEDNVRSGDTVARLGGDEFIIQLSELSDVEAEA 529 Query: 629 --KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A + +++ + + + +TASIG + + +++ A+ AMYHAK Sbjct: 530 ELDAITVAKKLIQTLTQEFQINGQSLHITASIGVLVYPRDADSHELIMQRADTAMYHAKA 589 Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 +G N F+ ++ DL A+ N E +L+Y P I +++ +EALI+W Sbjct: 590 KGRNGYAVFKSDMEAVIMRRQTLESDLHRAIYNHEFFLLYQPQIDANTGKLLCVEALIRW 649 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 +HP G IS EF+ IAE+ I I ++LE+ + I W + P + +N+++ Sbjct: 650 NHPVEGIISPLEFIPIAEDNGTIVQIGNWVLEKACQQIKLWIKEYGYSPA-VSVNLSAIQ 708 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L +L + +L+ + ++L +E++++ +RS LL L+K+GI +++DDFG Sbjct: 709 LSQGDLVSTISSLLEQEKIPAELLELEVTETLILHEEKRSIDLLKSLKKLGIRISIDDFG 768 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L++L +P D +K + + ++ I+++II M+K + + A+ + + Sbjct: 769 TGYSSLNHLKKLPLDKLKIDRTFVSDIPGDPDSETIIKTIIKMSKELGLEVTAEGVETQE 828 Query: 923 DIKELTRMGCDYIQDSHVASPLGF 946 ++ L C Q + P+ Sbjct: 829 QLEFLKGERCPQFQGYYFDRPISP 852 >gi|260549770|ref|ZP_05823987.1| signal transduction protein [Acinetobacter sp. RUH2624] gi|260407287|gb|EEX00763.1| signal transduction protein [Acinetobacter sp. RUH2624] Length = 950 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 270/577 (46%), Gaps = 13/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V T Q D E L + + + ++ D + + P + G + Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLCAIVLEQAAEGIFILDEKLNYIDVNPYYEKLTGFSK 433 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIR 500 + L I IN + + DS + G +F + A + ++ + I Sbjct: 434 SELLNQQ---LFNIAINQKLQQQQFHDSITQQLLKTGEYMGQFDEKFASGKSVYLWLHIN 490 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + + ++ YIG A D+TEQK+ + + D+LT +PNR + ++L L + Sbjct: 491 AVKDEHNQVINYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPSY 550 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ I+ID+++ N+ L GD++L +R+ ++A L+G+ F II Sbjct: 551 SFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAII 609 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 I + + +++ P + ++E +TASIG A + + +AE A Sbjct: 610 YEISPIHPNIEQYCQNILQALNAPFYIDQQEYFITASIGVACFPEHGRQVDHLNNHAEQA 669 Query: 681 MYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 + AK GGN + + + + ++++L A++N E + Y P I L D+ + G E Sbjct: 670 LSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSVKGFE 729 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W HP+ G + + F+ AE +I I +L+++ + + W+ I + +N Sbjct: 730 ALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYTDIQVSVN 788 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 I ++ + L + + + S ++L +ES ++ N + + LL +++ IS+ Sbjct: 789 IVAQQIHRGLLLNDLDEFLEQYQLDGSNLELEITESALLDNTDNVKKLLHSIKERNISIA 848 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDI 918 LDDFGT S L+YL P D +K + + ++ +++ AI+ ++I M K++ ++A+ + Sbjct: 849 LDDFGTGYSSLAYLTEYPIDILKIDRAFISKIGDQKQEAIVNAMIAMGKSMGLKLVAEGV 908 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 E + L + CD++Q + PL N I++ L+ Sbjct: 909 ETEEQVIYLQKQQCDFLQGYFFSRPLHPNQIIQYLQS 945 Score = 94.2 bits (233), Expect = 1e-16, Method: Composition-based stats. Identities = 61/433 (14%), Positives = 123/433 (28%), Gaps = 79/433 (18%) Query: 194 IIIGVASLLAIFLTIFYMVNRSSML----------IPTFAMAWVVLGYISIDFGFLSKLV 243 I + + IF + ++ + + A+ + + I+ L + Sbjct: 54 FIWSIGFTVLIFTCLLFIPKLLTQYRDINFIKKTDLTLQAICLLSGILMGINIIVLHFSL 113 Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303 + + ++S+ II L R+ + + +S + Sbjct: 114 PASLISVSDVHILIALFITSAHIIGLTFLTQQPRYF-------YLLFIPSTVPLLISQFT 166 Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363 + ++ T Y + Y++ L+ + Sbjct: 167 HSQVTQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL----------FKNKQLVQVAEQ 216 Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-------ERQ-------SL 409 + L L V Q Q + ER + Sbjct: 217 HTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNERLESHRHNLAF 276 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNFRTI 467 A +G WDWDI + ++ T + + + + L IH NDR F Sbjct: 277 AHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTSLHLKAILERIHPNDRKLFDER 331 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKKS 525 L + + FR+ + + W+ R +S LR +G+ DI ++KK Sbjct: 332 LKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKTNKALRMVGMTRDIHQEKKD 391 Query: 526 LEGILCNA------------------------FQDNLTG-----IPNRQSFLDRLTTILD 556 E + A + + LTG + N+Q F + L Sbjct: 392 QEHLRLCAIVLEQAAEGIFILDEKLNYIDVNPYYEKLTGFSKSELLNQQLFNIAINQKLQ 451 Query: 557 LSATDDNLRPTVM 569 D++ ++ Sbjct: 452 QQQFHDSITQQLL 464 >gi|72383859|ref|YP_293213.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134] gi|72123202|gb|AAZ65356.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134] Length = 1109 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 122/440 (27%), Positives = 216/440 (49%), Gaps = 6/440 (1%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 ++++ E + A D LTG+PNR F L + + V+ +D+D++K +ND Sbjct: 657 RRQAEEDLRFIANHDALTGLPNRLMFKAEFEKALTRARNSEQALH-VIFVDLDEFKVVND 715 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 +G GD VL + R+ E L ++++R G+ F ++L + ++ + ++ ++ Sbjct: 716 TIGHNAGDAVLREMADRLRESLPDVELISRFGGDEFIVLLDPKGDTTILGRTIARIQAAL 775 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 + + + I +TASIG +S+ +LK+A+LAMY AK G N + + Sbjct: 776 ELAFIVNDTPIHMTASIGISSFPEDGNDWQTLLKHADLAMYGAKQIGRNGYQFYCQRMSA 835 Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 S + ++ L A+E E L Y P I L +EALI+W HP G I ++F+ Sbjct: 836 SLQRRIDMESHLRRAIEQQEFILYYQPRIVLDSGACTAVEALIRWRHPDLGLIMPADFIP 895 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 AE+ +I I + L R +W Q PP+ + +N++++ D L + + Sbjct: 896 FAEQSGIIVDIGAWALREACRQNAAWVAQGL-PPVRVAVNLSARQFADKSLRLTIIDALR 954 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 + + ++L +ES+VM + ER+ L RL++IG+ L +DDFGT S L+YL P D Sbjct: 955 QARLPGNLLELELTESMVMHDAERASRWLSRLKRIGVRLAIDDFGTGYSSLAYLSRFPID 1014 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 TVK + S + + I ++I + + ++A+ + E ++ L GCD +Q Sbjct: 1015 TVKIDRSFVRYIPESRSDTQITSAVIGLGHRLGLEVVAEGVENEAQLEFLRSEGCDEVQG 1074 Query: 938 SHVASPLGFNSILKLLKERF 957 + + PL I L R Sbjct: 1075 YYFSHPLPPAKITAFLASRM 1094 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 76/255 (29%), Gaps = 18/255 (7%) Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA--------WI 345 A F P T + + ++G VL + W+ Sbjct: 265 AGDFAEPAVSPSATNLLYDSVTGLVTHGGAASEDGGSIRGTNSHVLSMVVVRNFGGRRWV 324 Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVL--IVILIGFTVIQHVLATGYFSQGIFSD 403 + F + L ++ L+ ++L + + + + V + + Sbjct: 325 IAFSADATAISGPQRYLPALVMISGLIISVLLSWLAYALSSSRARAVAVAEQMTYNLRES 384 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 S A + W D+ + + ++A +LG I R Sbjct: 385 QAALSEAQQIARLGDWRIDLEKSSAHFSREMARLLGWRGD--KPTPETLFEAIDAGYRIV 442 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 R + + + R ++E R + W+ + + +LR G A DI+++K Sbjct: 443 LREKMQAALLDRL-PFEFECPYRFRGRRRGWLHLIGHAHGAQDSAVLR--GTAQDISQRK 499 Query: 524 ---KSLEGILCNAFQ 535 ++ A Sbjct: 500 SAEQAQAQEHQIALH 514 >gi|87121287|ref|ZP_01077177.1| putative sensory box/GGDEF family protein [Marinomonas sp. MED121] gi|86163444|gb|EAQ64719.1| putative sensory box/GGDEF family protein [Marinomonas sp. MED121] Length = 716 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 117/502 (23%), Positives = 230/502 (45%), Gaps = 13/502 (2%) Query: 460 DRDNFRTILDSF--VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 D + + + +E R+ W + + + + Sbjct: 207 DLNKILEFIARVQSLSEGLTTQSWELRLSTNQG-VRWHKLEVS----YDRRQSKSYVSLL 261 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+ + ++ + D LT +PNR L L + ++ + V+ +D+D +K Sbjct: 262 DVHKLREQENALFKLKNYDALTDLPNRHLLYQELDLTLQTAQ-NNLTQFGVLYLDLDGFK 320 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND G VGD+++V + +R+ L L RL G+ F ++ ++ A + Sbjct: 321 VVNDSFGHRVGDELIVQVAKRLMTALPKGGRLFRLGGDEFALLQEGVTQIEELEVLAQNL 380 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + + + E+ +TASIG A + + +LK A++AMY AK G N + + Sbjct: 381 MQVACAAYPIADMEMLITASIGIAHYPTHAQDVDSLLKLADVAMYRAKSIGHNSYKVYDS 440 Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 + + + + + L A+E E L Y P I L+D+ VG EALI+W HP++G IS Sbjct: 441 NMSQSLNAYLTLGGGLRRAIEKQEFELYYQPKINLLDQTTVGAEALIRWRHPEFGMISPD 500 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ IAEE +I + +++ + + WR+ P + + +N++ + + +L + Sbjct: 501 RFIPIAEETGLILPLGEWVIRTACKQLQEWRE-LGFPDMTVSVNLSGRQFMQADLVNMVH 559 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T +P ++L +ES++M + +++ L R++G+SL++DDFGT S L+YL Sbjct: 560 QVLIETGINPKNLELELTESMLMADADQTIEKLHGFRELGLSLSIDDFGTGYSSLAYLKK 619 Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P T+K + S + + AI+++ I MA ++ +IA+ + + L C Sbjct: 620 FPIQTLKIDRSFVRDLSSDLDDNAIVKATIVMASSLNLKVIAEGVETHTQLDVLKGYQCQ 679 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 +Q + P+ + Sbjct: 680 EVQGFFFSKPMPRQEFNLYIAR 701 >gi|187777039|ref|ZP_02993512.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC 15579] gi|187773967|gb|EDU37769.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC 15579] Length = 892 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 133/452 (29%), Positives = 236/452 (52%), Gaps = 11/452 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + + N R Sbjct: 447 ELDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTI---KNYRNKRFA 503 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R L+ + RL G+ F II+ N+ Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLIGPNHKIGRLGGDEF-IIVQIINSI 562 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ PI E ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 563 SDAEKLAGKICTTLNHPIKYKEDDLFIGASIGISVYPEDGKDTSTLMKNADAAMYAAKKN 622 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E +EL + + PI L +I+ +E+L++W Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAVESLVRWK 682 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 IS ++F+ +A+ + I I+ ++L + W Q N P+++ NI+ K + Sbjct: 683 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCHLWERQNNN-PLYVSANISFKQM 740 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L+K GI ++LDDFGT Sbjct: 741 KDKNFVDNVLNILKTTKLPPSYLCLEITEDEAMEDVDLSIRTLEALKKHGIKISLDDFGT 800 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ IIA+ + Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIDQ 860 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954 ++ L + CD+IQ +++ PL + K ++ Sbjct: 861 LEILQELDCDFIQGFYISEPLPIKNFESKFIR 892 >gi|83643246|ref|YP_431681.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83631289|gb|ABC27256.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 721 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 122/423 (28%), Positives = 218/423 (51%), Gaps = 6/423 (1%) Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LTG+PNR F + L + + + VM++D+D++KKIND L + GD ++V Sbjct: 288 THDALTGLPNRSFFQEDLAQAILRAQRANKY-LAVMLVDLDQFKKINDTLTHSAGDQLVV 346 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 +LT+R LL+ +AR G+ F ++L + + ++ A + + P L + E+ Sbjct: 347 ALTKRFNTLLENEISIARAGGDEFMMLLENPESVDEVIAIANRIMACMKQPFTLNDEEVF 406 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--L 711 +T SIG A + +++ ++++NA+ A+Y AK G N + ++ D L Sbjct: 407 ITCSIGIAVYPEGGVSAEDLIRNADAALYRAKAAGRNGYHFYTTGMHAEALKRLELDRWL 466 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+E +EL L + P + L + G E L++W P+ G IS +EF+ +AEE +IK + Sbjct: 467 REAIERNELSLAFQPKVNLKTRDYTGAEVLLRWYRPEQGFISPAEFIPLAEETGLIKELG 526 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 ++++ R + + WR + I + IN+++ L D EL + L+ + P +++ Sbjct: 527 MWVVRRACQQLSEWR-GTPLSHIRLAINLSAIQLEDKELVHKIDNLLREFDVPPRQLEFE 585 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +E V + N E + L L K+G L++DDFG S L+YL + P +K + S ++ Sbjct: 586 LTEEVFIQNIESNMAHLNELIKMGFRLSIDDFGVGYSSLAYLKHFPISCIKIDRSFVSQL 645 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 I+ ++I MA N+ +++A+ + E L + GCD Q A PL + + Sbjct: 646 ETNADDRVIINAVIAMAHNLNLSVVAEGVETEAQAAYLQKQGCDEAQGYLFAKPLPPDQL 705 Query: 950 LKL 952 KL Sbjct: 706 YKL 708 >gi|163853410|ref|YP_001641453.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163665015|gb|ABY32382.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 817 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 150/755 (19%), Positives = 280/755 (37%), Gaps = 36/755 (4%) Query: 219 IPTFAMAWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWN 276 W + + F L I A + ++ + L Sbjct: 55 FVFGCSVWSLHFVAMLAFQPGAQAAYGLLPTAASIGIAVAGALIAFLIWCRADHDPLKVA 114 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + A + L + G R Sbjct: 115 AAGLVLATAISGMHYAGVGAMAANSLLAFEEALVHASLGLCATLAVIALARAGDLAGLGR 174 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQ 388 + + L M + L + L+ + + + Sbjct: 175 RIEVSLWLALAICGLHFTGMTALTVAPAAPVAGGGAVLGSTQLGLAVGLVSLAVLAAGLT 234 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +L + + + R L + ++++ V + G + + G Sbjct: 235 ALLMQQHLMRRRMDELSRMRLLGNLAHEVLF-IHREGRVVEINQAGLRLFGAPASEIIGR 293 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L D L + EF VR A + + R + + G Sbjct: 294 P--LLDLFAEADAPVL---LRRSRCHPEDLFPEEFEVRTAAGIAVPVELTCRAI-DYLGR 347 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + + ++ +++ I A D LT +PNR +RL L+ +A + + Sbjct: 348 PATAVALRD-LSRRRRDEARIRHLALHDALTDLPNRTLLEERLGLALENAAEN-GTSVAL 405 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +D+D++K +ND G A GD +LV +R+ L+ D LAR+ G+ F I+L Sbjct: 406 AYLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRTLA 465 Query: 629 KIADFAIAMRKSIAMPINLLER--------EITVTASIGFASWTSSKITSSEMLKNAELA 680 ++A+ A + ++ P + + + + AS+G A + S T+ + + A+ A Sbjct: 466 QVAETAERLVAALGRPFQIEGQIGGSVEGLRVEIGASVGIALYPSDGSTAESLKRAADTA 525 Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y K G V F + R ++ +L A+ EL L Y PI+ EI Sbjct: 526 LYRVKDEGRGAVRFFEAAMDEQLQARRRVEHELSGAIARGELALDYQPIVNGRTGEIEIF 585 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + ++F+ +AE+ I I ++L+ +W P + + Sbjct: 586 EALIRWHHPERGCVFPADFIPLAEQTDQIGRIGAWVLDTACAAAAAWP-----HPWRVSV 640 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ K G+ A++ + SP R+ L +ESV + + + +L LR +G+ L Sbjct: 641 NVSPKQFRQPGFAAGVAAVLGRHGLSPGRLVLEITESVFIHDAATALTVLTALRTLGVRL 700 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 LDDFGT S LSYL FD +K + S + G + I+R+I + N+ T+ + Sbjct: 701 ALDDFGTGYSSLSYLQRFQFDKIKVDRSFVRGLGQHADALTIVRAITHLGHNLGLTVTVE 760 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + + L +GCD +Q A P ++ + Sbjct: 761 GVETQEQLTVLRELGCDQMQGYLFARPAPMTNLSE 795 >gi|225862526|ref|YP_002747904.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] gi|225786244|gb|ACO26461.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102] Length = 689 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 123/549 (22%), Positives = 249/549 (45%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNNFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ FA +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K S Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|124265497|ref|YP_001019501.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum PM1] gi|124258272|gb|ABM93266.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum PM1] Length = 806 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 143/578 (24%), Positives = 269/578 (46%), Gaps = 17/578 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 ++ F +I + Q + ER + S + + + I ++G Sbjct: 234 LIAFFVLISDISRHRLAEQAVRESEERLGKFMQASAEGI-VFHKGGVITDANAPIGMLVG 292 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G R L ++ + ++ S YE + + + + Sbjct: 293 YGLDELMG--RRTLDFVAPDQVSKVAAVMSS-----GQETTYESALIDKSGRRIPVEFIV 345 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 R M + + + I D+ ++ + I A D LTG+PNR +F+ + ++ +A Sbjct: 346 RTMMRGDERLR--MTIVRDLRDRHAAQAHIHHLAHHDALTGLPNRLAFMAEIDQLMARAA 403 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ ID+D +K++ND LG GD++L ++ +RIG +L+ D++AR G+ F + Sbjct: 404 ASREA-LALLFIDLDHFKRVNDSLGHLAGDELLKTVAQRIGAVLRASDVVARFGGDEFMV 462 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAE 678 ++ +AD A + +I +P++ R I+VT SIG A + IT +E++K+A+ Sbjct: 463 LIGGGPRLEDVADVARKLLAAIEVPLDAEVGRSISVTPSIGIAMFPGDGITPAELIKHAD 522 Query: 679 LAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMY AK RG + F + S ++++ +L A+E E L + P +R D +V Sbjct: 523 TAMYRAKARGRATYQFFDPTLASNAYAALVLEGELAQALERGEFVLHFQPQVRAGDGVLV 582 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EALI+W HP+ G + +F+ +AE+ ++ I ++L AR W D + + Sbjct: 583 GAEALIRWQHPERGLLLPDQFIPLAEQQRLMLPIGTWVLHEAARAARRWHDDGL-CAVPV 641 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N+++ + + ++ ++L +E ++M L +L+ +GI Sbjct: 642 AVNLSAVQFQAPDFVSTVAQALAGAGLPGRLLELELTERMLMDELPEVSGRLAQLKALGI 701 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTII 914 L++DDFGT S L +L +P D +K + S + E R +AI R+II MA+++ T+I Sbjct: 702 RLSVDDFGTGYSSLGHLKSLPIDKMKIDRSFVVDLPEARGSVAIARAIIQMARSLGITVI 761 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 A+ + E L R CD +Q ++ L + Sbjct: 762 AEGVETEAQRAFLAREQCDELQGEAISPSLSLQAFEAW 799 Score = 55.0 bits (131), Expect = 7e-05, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 4/148 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442 V+ V AT + E+ L ++ +D R + A G Sbjct: 111 VCVLHDVSATRQAERVASVQAEQLRLLADSVPALIACYDAREQRCLFANRPYALTFGRDE 170 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 S+ G I R LD+ + +R + YE ++ AD + W+ + + P Sbjct: 171 QSILGLPIA--EVIGEAALRRIRPQLDTVLVEQRA-VAYERQLVRADGRTQWVEVHLLPQ 227 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530 ++G ++ + + +DI+ + + + + Sbjct: 228 LATDGRLIAFFVLISDISRHRLAEQAVR 255 >gi|87120422|ref|ZP_01076317.1| PAS:GGDEF protein [Marinomonas sp. MED121] gi|86164525|gb|EAQ65795.1| PAS:GGDEF protein [Marinomonas sp. MED121] Length = 1003 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 127/596 (21%), Positives = 252/596 (42%), Gaps = 28/596 (4%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 LA + R + + D + D V I G + Sbjct: 411 ALARDISRRKKAESELRIAATAFETQDGILITDTQHKIVRVNTAFQKITGYQEAEILDQN 470 Query: 450 RNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + L H D F+ I G + E R + + I + N Sbjct: 471 ISLLRSGRH--DEIFFQKIFACIDD--CGYWEGEIWNRKKCGEIVPELTTISTVYNDLKI 526 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD------- 561 + Y+ I DI+ K++ + I ++ D+LT +PNR+ +++ ++ + Sbjct: 527 PINYVYIIKDISLTKQNEQLINQLSYYDSLTCLPNRKMISEKVEQLIKQAQHQSLTVNTS 586 Query: 562 ----DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 +R ++ ID+D +K IND G +VGD +L + R+ + ++ DI+AR G+ F Sbjct: 587 GHYLPLIRHALLFIDLDHFKNINDSKGYSVGDKLLQEVAHRLIDTVRSTDIVARFGGDEF 646 Query: 618 GIILISEN-------NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 ++L + + + + ++A + +++S+G S Sbjct: 647 ILLLEGVDVSLDAGRALYRAKKVSCLINDALAQVFEINGEHFYISSSVGITEIDESVDEV 706 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPII 728 + K+AELAMY AK G N + RV ++ + A+ E L Y P Sbjct: 707 FDAFKHAELAMYEAKSSGRNRYCFYSPQMQEKILERVNLETAMRKALIKDEFLLYYQPQF 766 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 + G+EALI+W HP G IS +F+ +AE+ +I I +++ + WRD Sbjct: 767 D-DLGVLRGVEALIRWHHPDKGIISPMQFIPLAEDSKLIIPIGEWVVREACNTLARWRDD 825 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + + + +N++ ++ + ++ ++ +T S ++ +ES+++ + + Sbjct: 826 PLLSQVKVSVNVSVIQFAQDDFVDLVRLILVETGASAKLLQFELTESMLIDDKANILAKM 885 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMA 906 L+ +G+ L+LDDFGT S LSYL +PFD +K + S + + + +I M Sbjct: 886 QGLKALGVLLSLDDFGTGYSSLSYLQQLPFDQLKIDQSFVRNLNGQGDQHPLALTITTMG 945 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 ++ +IA+ I + + +L GC+ Q + P+ + + ++ ++ L++ Sbjct: 946 HSLGLEVIAEGIEEKESLLKLQSFGCNLFQGYFMGHPMPLSKLEEVGLQQLSLMQT 1001 Score = 38.0 bits (87), Expect = 7.4, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 22/182 (12%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421 + + +I L+ GLV ++ I + + + +R + + D +++ Sbjct: 263 IVSYLIISGLIAGLVALICHIYLIKNGLEGVVKQRTLALTNTNKRLTGLLDAIPDFLFEI 322 Query: 422 DIVRDRVTT---TPDIATILGLASGSMHGPIRNWLPYIHINDRDNF------RTILDSFV 472 D + + + ++ G + +L + + Sbjct: 323 DDNEEVLQCHFPSKLLSRRFG------THIVGRYLTDVFPESVILVYQDSFKEAKTEGHS 376 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + L E + HW + + +S+ + ++ +A DI+ +KK+ + Sbjct: 377 AGKSFCLDIE-------GKEHWFELSVSYSISSDYNRPCFVALARDISRRKKAESELRIA 429 Query: 533 AF 534 A Sbjct: 430 AT 431 >gi|170740237|ref|YP_001768892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] gi|168194511|gb|ACA16458.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacterium sp. 4-46] Length = 1034 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 150/578 (25%), Positives = 264/578 (45%), Gaps = 30/578 (5%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A + + + A+ + D + +A +LG A ++ Sbjct: 466 ALLERDRSLRTQNRLFDAALGNMSHGLLMADAAGRLIVANRRLAELLGTAPETLA--PGE 523 Query: 452 WLPYIHINDRDN---FRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSN 504 + I R L +R E F++ D + I RPM++ Sbjct: 524 SMEVIFAEIGARCSLGRRALARMRALQRDIATREGAGTFKISGQDG--RTLSITQRPMAD 581 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + I D+TEQ+++ + I A D LT +PNR F +RL ++ A D Sbjct: 582 G-----GSVAIYEDVTEQQQAEDRIRFLAQHDPLTRLPNRVLFRERLDAMMRADAPDAT- 635 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 ++ +D+D +K +ND LG VGD +L ++ R+G + ++ARL G+ F + Sbjct: 636 --ALLYLDLDAFKNVNDTLGHPVGDALLAAVGARLGACVGEGGVVARLGGDEFAVACAE- 692 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 A + ++ P L R + V AS+G A + +L++A++A+Y A Sbjct: 693 -GEAAAQALATRIIAQLSAPYALAGRTVQVGASVGIAVSGPEARDADTLLRHADMALYEA 751 Query: 685 KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K RG F S +R+ ++ DL AV +L L Y P+ L + G EAL+ Sbjct: 752 KGRGRGLACVFEKSIAARLHERLALQSDLAEAVPGGQLVLAYQPVFDLAGGRVSGFEALV 811 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+HP G +S ++F+ IAE+ I+AI F+L+R RD + P I + +N++ Sbjct: 812 RWNHPVRGFVSPAQFIPIAEQTGQIEAIGAFVLDRACRDAAALP-----PGIRVAVNLSP 866 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L ++ E + ++++ +P+R++L +E+ +M + ER LL R+R +G+ + LDD Sbjct: 867 VQLRAEDIVERIATALAESGLAPARLELEITETALMEDSERMVQLLERIRALGVRIVLDD 926 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL PF +K + S + T +AI+ +I+ +A + A+ I Sbjct: 927 FGTGYSSLSYLRTFPFHKIKIDQSFVREMTTRANSLAIVSAIVGLADELGMATTAEGIET 986 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 + + ++GC Q + P S ++L+ P Sbjct: 987 ADHLDFVRKVGCREAQGYFLGKPKPILSAFEVLRAPLP 1024 Score = 37.6 bits (86), Expect = 9.4, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 17/142 (11%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 A+ D WD VT + L+ ++ R + Sbjct: 312 HELQAARDRAHRMLENAIEAMADGFVMWDRDDRFVTCNSRYRALYALSEPALRPGAR-FE 370 Query: 454 PYI--------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 I + + + + V + R R+ ++ + R + Sbjct: 371 DIIRYGAERGQYPQAGSDLDAFVRNVVAWHRDDHGTLERLL-PGGRWVLITER----RTA 425 Query: 506 NGDILRYIGIANDITEQKKSLE 527 G+ +GI DIT K +LE Sbjct: 426 TGET---VGIRTDITALKAALE 444 >gi|229015865|ref|ZP_04172833.1| Sensory box/GGDEF [Bacillus cereus AH1273] gi|229022086|ref|ZP_04178640.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228739238|gb|EEL89680.1| Sensory box/GGDEF [Bacillus cereus AH1272] gi|228745427|gb|EEL95461.1| Sensory box/GGDEF [Bacillus cereus AH1273] Length = 689 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 123/577 (21%), Positives = 247/577 (42%), Gaps = 16/577 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + + + + A I + + D + + + P I Sbjct: 121 ICQFIICITRDITAQVKEKVEIEEKQMLFKSLLEYNNDSIVSVNSIGRITYANPATYEIF 180 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + +I+ F+TI + R ++ + + + ++ +R Sbjct: 181 GYRYEELSNQF--VFQFINKEYEQAFQTIFKGALQGRAQQIVAK-KYIHKEGYELYISVR 237 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 P+ N +I+ + D+T Q + A+ D LTG+ NR S ++L L Sbjct: 238 TIPII-VNSEIVGVYIVTRDVTRQVLNEMKTEYLAYFDQLTGLMNRISCTNKLNEFLA-- 294 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 +N + ++ ID+D++ IND G GD VL +T + ++ L R ++F Sbjct: 295 ---ENKKFALVFIDLDEFHLINDTFGHKEGDQVLKKVTECLRDVKIEDMHLFREHDDQFV 351 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 +++ + + + A + K I+ L E ++ ++ASIG + + + + Sbjct: 352 MLIENIT-RECVEEVAQTILKKISGHFVLEEEDVYLSASIGIVMAPEDGMDEKILFQRVD 410 Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 A+ AK +G + + R R +I+ L A+E E +L Y P I + +I Sbjct: 411 AALEKAKEKGKGYYHFYCSGLDCEREQRFIIENQLHRAIEKDEFFLYYQPQINIETGKIA 470 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 +EALI+W++ + G +S ++F+ +AE I ++ +++ ++ I W ++ + I Sbjct: 471 SMEALIRWENKELGLVSPNQFIPLAERTGFIIKLDEWVVHQVCEQIREWLNKGYEV-VPI 529 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +NI+++ L E + ++K P + + +E ++ + + S+ +L +L++ + Sbjct: 530 AVNISARHFRSITLIEMITRALNKYNVPPHLLVIEVTEGALI-HKDVSKRVLLQLKEQNL 588 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914 + LDDFGT S LSYL P DT+K + S M G E+ I +II +A + +I Sbjct: 589 KIHLDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIYIDERDTNITAAIIHLAHTLGLNVI 648 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 A+ + I+ L +Q PL + Sbjct: 649 AEGVEKAEQIQFLKEKNVKIVQGYFYNRPLSIYDVEN 685 >gi|119469199|ref|ZP_01612183.1| hypothetical protein ATW7_18925 [Alteromonadales bacterium TW-7] gi|119447451|gb|EAW28719.1| hypothetical protein ATW7_18925 [Alteromonadales bacterium TW-7] Length = 1003 Score = 476 bits (1225), Expect = e-131, Method: Composition-based stats. Identities = 146/562 (25%), Positives = 244/562 (43%), Gaps = 16/562 (2%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIH-IN 459 SL S + + D P + + G L H Sbjct: 445 DSLHLASLVYGNSSESMAITDANGIIFDVNPAFCETTQYSKDEVIGHSTRILSSGEHSKE 504 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 + +++ GR Q E R + + I + + N R I I D+ Sbjct: 505 FYEKIWASINA-----TGRWQGEIINRKKNGVLFTEWLNIDTVYDENNKPARRIAIFTDL 559 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 TE+ ++ + I A D+LT +PNR RL + +N VM++DID +K I Sbjct: 560 TEKIQANKTIWRQAHFDHLTDLPNRLELKKRLNKQFSNA---NNESFVVMLLDIDHFKDI 616 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG GD++L +++RI K + +AR+ G+ F I+ ++ I A + + Sbjct: 617 NDTLGHHYGDNLLKVVSQRIVNSAKNAEFVARIGGDEFVIVFNHIKSTRHINQIASNILQ 676 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 S++ +++ E+ ++AS+G A + ++LK A+ AMY AK+ G N E F Sbjct: 677 SLSSALHVENEEVFISASMGIACAPEDGENTEQLLKAADQAMYKAKNNGRNGFEFFSRDM 736 Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + + +DL A+E + L Y PI+ L D I E LI+W HP+ G IS F Sbjct: 737 REQAQARMVLLKDLRCAIEYHQFELFYQPIVSLNDLHIHKAEGLIRWQHPQKGLISPIAF 796 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQA 816 + +AEE I AI F+ + + + I +N++ L + A Sbjct: 797 IPLAEETRQINAIGQFVFSQAIETLTDIKKLT-DDDFQISVNVSPIQLSTANSGIDDWYA 855 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ SPS I +E +++ E ++ L + K G+ L LDDFGT S L+YL + Sbjct: 856 MLDAAKISPSSIVAEITEGLMVNPEELTQKRLKHIVKSGMQLALDDFGTGYSSLAYLQEM 915 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 D +K + + ++ +II MA + +IA+ I + + LT GCDY Sbjct: 916 DTDYLKIDKRFVDNIKADSQELSLCEAIIVMAHQLGLKVIAEGIETPLQYQLLTEAGCDY 975 Query: 935 IQDSHVASPLGFNSILKLLKER 956 Q + PL + + L+ E+ Sbjct: 976 GQGYLFSKPLNKSDFMDLIAEK 997 >gi|229120144|ref|ZP_04249395.1| Sensory box/GGDEF [Bacillus cereus 95/8201] gi|228663185|gb|EEL18774.1| Sensory box/GGDEF [Bacillus cereus 95/8201] Length = 689 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 122/549 (22%), Positives = 248/549 (45%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ FA +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K S Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P D +K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDILKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|290960135|ref|YP_003491317.1| diguanylate cyclase [Streptomyces scabiei 87.22] gi|260649661|emb|CBG72776.1| putative diguanylate cyclase [Streptomyces scabiei 87.22] Length = 633 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 132/588 (22%), Positives = 263/588 (44%), Gaps = 49/588 (8%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A + + D VT + T+LG + + G + L + + Sbjct: 43 AFSVAPLAMAVVDRDGLVVTANGAMGTLLGTGTEPLTGRVAADLVDLASD--TRTWHAYR 100 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + R+ RL+ R++ D + W+ + + P+ + DI+ ++ + Sbjct: 101 EVLRGRQARLRCTRRLKQQDGGWLWVQVSVAPLPEEE---RAVLLSVTDISAHRQLQARL 157 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATD--DNLRPTVMVIDIDKYKKINDVLGIAV 587 D +T +PNR F ++L+ L+ D R ++ +D+D +K +ND LG V Sbjct: 158 RHLQMHDPVTRLPNRTLFFEQLSAALEREGYDEVGTGRIGLVYLDLDGFKAVNDTLGHRV 217 Query: 588 GDDVLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAI 635 GD +L ++ R+ + +ARL G+ F +++ + ++AD A Sbjct: 218 GDRLLAAVAERLTRCADEAALLRKPGTPAGAPLVARLGGDEFALLVEDSTGTEQLADLAD 277 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 ++ K++ P +L + ++V+ASIG S+ T++ +++ A+ +Y AK G F Sbjct: 278 SVLKALQAPFDLAGQRLSVSASIGVVERQSTSTTTTGLMQAADTTLYWAKADGKARWTLF 337 Query: 696 RVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + L AV E L Y P++ + + E+ G+EAL++W HP++G ++ Sbjct: 338 DPERNAHRMTRQALSSTLRAAVGRGEFVLEYQPLVGMAEGEVRGVEALVRWHHPQFGLLT 397 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCE 812 + F+ +AEE I + ++L R W+ D + PIF+ +N+A + + D++L Sbjct: 398 PNRFISLAEEDGSIVQLGRWILATACRQARRWQTDHPDRAPIFVSVNVAVRQVWDSDLVA 457 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++++T +P ++L +ES +MG+ R L L +G+ + +DDFGT S L+Y Sbjct: 458 DVAEILAETGLAPHLLQLELTESALMGSAGRPLQALRALSDMGVRIAIDDFGTGYSNLAY 517 Query: 873 LGYIPFDTVKFNGSLMTG---------------------------STEKRIAILRSIIPM 905 L +P +K +G+ + G + I+ +++ + Sbjct: 518 LSRLPVSVLKLDGAFVRGFQYEGGEEGAGPGAAGPEADDVEDSGQPSPADEIIVEALVQL 577 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A + ++ A+ + + L R+GCD Q + + I +LL Sbjct: 578 AHRLGLSVTAEGVETDAQASRLRRLGCDTGQGWLYSRAVSPERIAELL 625 >gi|146308662|ref|YP_001189127.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp] gi|145576863|gb|ABP86395.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp] Length = 715 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 134/634 (21%), Positives = 259/634 (40%), Gaps = 19/634 (2%) Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386 + M+G R L +IF+ I R + ++ V+ Sbjct: 76 VARLMRGNPRTRLTP----IIFVSAIAQTQDAVLRGYSTGAVDFVLKPFDPSVLRHKIHS 131 Query: 387 IQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + Q + +R + + + + P +A +L Sbjct: 132 LLEHERNRSELQQLTQQLDRARAFNASVLANAAEGIMVVGEDGRIQFANPAMAQMLEGEV 191 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G + G + ++ +E +R + + P Sbjct: 192 GDLEG-AELMSFLKNPAVEGGWQESEFFRHFKREATYRVHEAMLRTLSGGCLPVALSCSP 250 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + IA D++ + + A D+LTG+ NR+ F L + L Sbjct: 251 LPRMQ---QAMVVIALDMSVVRNLHAQLESQAVTDSLTGLLNRRGFHLALESALARIERS 307 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 R V+ +D+D +K+IND LG VGD +L + ++ L+ D LAR+ G+ F +L Sbjct: 308 GQ-RIAVLYLDLDGFKRINDSLGHDVGDQLLRRVGEQLKACLRPYDSLARIGGDEFTALL 366 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + A A + + +++ L + + AS+G A + + +L++A++AM Sbjct: 367 DNLGHPEDAAKVAEKLIELVSVRHTLDGVDFALGASVGIACFPECGQSVEGLLRSADMAM 426 Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G F R+M++E L A+EN + LVY P L + G E Sbjct: 427 YEAKRAGRQQYRFFSPEMNGRARSRLMLEESLRHAIENDDFVLVYQPQFHLNSGRLRGFE 486 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 AL++W H G ++ + F+ + EE +I + ++ AR + R Q + + IN Sbjct: 487 ALLRWQHRVAGIVAPNVFIPLLEETRLINRLGEWIFREGARQLAGLRSQFGEE-LILSIN 545 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ +L +Q ++ S++++ +ES +M + E ++ L LR++G+ + Sbjct: 546 VSPVQFGMPQLVADLQRVLDVHGLKASQLEVEVTESALMQDLELTQAQLRHLRELGVKIA 605 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL + DT+K + + + + A++ +II + ++ +IA+ Sbjct: 606 IDDFGTGYSSLAYLRHFELDTLKIDRLFIANMLDSPRDAAVVSTIIDLGHHLGLEVIAEG 665 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + L C +Q VA L + L+ Sbjct: 666 VETQAQRDWLVEHRCSIMQGFLVAPGLSAEAALQ 699 >gi|304395432|ref|ZP_07377315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. aB] gi|304356726|gb|EFM21090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pantoea sp. aB] Length = 867 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 132/563 (23%), Positives = 261/563 (46%), Gaps = 17/563 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + + R + D +W+ D + + T+ G G + L Sbjct: 309 QQELANSEARFRDLAEAASDWIWETDAEGRLIYLSARFHTVTGHDITHWLGRHIDHL-LT 367 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H + + ++ L+ +F + + + + I + G Sbjct: 368 HPS-HSLVAWLRRQEEDGQQMPLRCQFMSAH--GNRRIGQLVAKTIWHDAKRI-GFRGTV 423 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT+ ++ I + D LTG+ NR L+ LT L L+ TD + T++ +D+D++ Sbjct: 424 SDITQGMEAEARIQFLSRHDVLTGLSNRMQLLEFLT--LHLAITDGSAPLTLVTLDLDQF 481 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 + IN+ G A GD+VL + +R+ + +++ARLSG+ F ++L E N ++A Sbjct: 482 RPINETWGHAAGDEVLSQIAQRLKRCIGPQELVARLSGDEFVLVLR-EANRERVAQRCAQ 540 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + PI+ + +T S+G A +L+ A++A+ A+ G N + Sbjct: 541 LVHEVQQPISTGQHVHYLTISMGIACAPQDASHPEALLEMADIALNEARDAGRNQWVWYA 600 Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R D+ + + A++N+E L Y P +L+ ++ G EALI+W I+ Sbjct: 601 NEMTSQREDKREMARRIEKALKNNEFRLHYQPRYQLLTGQLAGAEALIRWQIAPDQWITP 660 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AEE +I I+ ++L R D + W + ++ +NI+ + ++L + + Sbjct: 661 DHFIPLAEESGLIATISDWVLMRACEDALGWGGER-----YVSVNISPMEFRTSDLVQRV 715 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + K+ +R++L +E+V +P+ + ++ LR +G+ LT+DDFGT + L YL Sbjct: 716 ANALEKSGLPATRLELEITENVTFEHPQHALEIMQGLRSLGVRLTVDDFGTGYAALGYLK 775 Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PF+ +K + S M +++ +++ II +A+ TI A+ I E + +L ++ C Sbjct: 776 TFPFNGLKIDRSWMKDFPESQQAQSVVAGIIALARAFALTITAEGIETEAQLNQLKQLSC 835 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 + Q + P+ + LL+ Sbjct: 836 EEGQGYFLGRPMPLAAFRTLLER 858 >gi|220928078|ref|YP_002504987.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulolyticum H10] gi|219998406|gb|ACL75007.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulolyticum H10] Length = 856 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 118/434 (27%), Positives = 220/434 (50%), Gaps = 8/434 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 +S E A D LTG+PNR+S L+ + L + + ++ ID+D +K IND + Sbjct: 425 QSEEKYNFMALHDVLTGLPNRRSLLEDSSRFL---GINTGKKTVLLFIDMDNFKYINDTM 481 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD+++ +R+ LK L RL G+ F +++ + N + DF + +S Sbjct: 482 GHEFGDELINKAGQRLKTALKDLGTLYRLGGDEFILLIYNIENQFEAEDFMSQVLQSFKD 541 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 + + +T SIG A + +++K A++AMY AK +G N + ++ Sbjct: 542 EFEIGNSVLHITFSIGAALYPDHGNNIEDLIKCADIAMYKAKEQGKNRYVLYDRDMDKAF 601 Query: 704 --RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 R+ I++ L A++N+E + Y P L ++I GLEAL++W + GN+S +F+ +A Sbjct: 602 SERMTIEKLLHTAMDNNEFEVYYQPQFDLQSQKITGLEALLRWKSSELGNVSPIKFIKVA 661 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I + ++L + + ++ + + +NI++ +L + + +I+ Sbjct: 662 EDTHLIIPLGEWVLNQACAFVKELHEKGLQ-GLTVSVNISTIQILQSGFTRKIIDIINSH 720 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 +P ++L +E++++ + L +L+K+GI + LDDFG S L+YL +P T+ Sbjct: 721 KLNPECLELEITETILIESFTTVFRKLNKLKKMGIRIALDDFGKGYSSLNYLKQLPISTL 780 Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + E+ I R II + K++ TIIA+ + ++ L + CD IQ Sbjct: 781 KIDKSFIDSVSIDEEGRTITRHIITLGKSLGMTIIAEGVEFNEQLEYLKKYHCDRIQGYL 840 Query: 940 VASPLGFNSILKLL 953 + PL + KLL Sbjct: 841 FSKPLPGEDVKKLL 854 >gi|330807167|ref|YP_004351629.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375275|gb|AEA66625.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 897 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 146/566 (25%), Positives = 268/566 (47%), Gaps = 13/566 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + + P I + +HG + LP + Sbjct: 336 RRTATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYTTEEVHGQRLSELPAL 395 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + S + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 396 --ENLSELLFDAPSALAQSN-SWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID + Sbjct: 453 EDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDSPISLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L LAR + N F ++L + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEFAVLL-DDTSLEAGQQIASQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A +++NA LA++ AK G + V+ F Sbjct: 569 LLMTLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D +L + Sbjct: 689 DQFISVAEETGLIIPIGKWIARQACRMSKQLTAAGLG-NLQVAINLSPKQFSDPDLVASI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++ + ++L +E +++ E + L L +L+++G++L +DDFGT S LSYL Sbjct: 748 ASILKEEQLPARLLELELTEGLLLEATEDTHLQLDQLKRLGLTLAMDDFGTGYSSLSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + + + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETAQQLAFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFP 958 D Q P+ +++ LK R+P Sbjct: 868 DVGQGYLFDRPIPGAELIEKLK-RYP 892 >gi|308185836|ref|YP_003929967.1| hypothetical protein Pvag_0305 [Pantoea vagans C9-1] gi|308056346|gb|ADO08518.1| Uncharacterized protein y4lL [Pantoea vagans C9-1] Length = 867 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 132/563 (23%), Positives = 262/563 (46%), Gaps = 17/563 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 Q + + R + D +W+ D + + T+ G G + L Sbjct: 309 QQELANSEARFRDLAEAASDWIWETDEEGRLIYLSARFHTLTGHDITHWLGRHIDHL-LT 367 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H + +L ++ L+ +F +A + + + + I + G Sbjct: 368 HPS-HSLVAWLLRQEAEEQQMPLRCQF--MSAQGHRRIGQLVAKTIWHDARRI-GFRGTV 423 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DIT+ ++ I + D LTG+ NR L+ LT L L+ D T++ +D+D++ Sbjct: 424 SDITQGMEAEARIQFLSRHDVLTGLSNRVQLLEFLT--LHLALPDGAAPLTLITLDLDQF 481 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 + IN+ G A GD+VL + +R+ + +++ARLSG+ F ++L E N +I Sbjct: 482 RPINETWGHAAGDEVLSQIAQRLKHCIGSQELVARLSGDEFVLVLR-ETNRERIDQRCAQ 540 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P++ + +T S+G A +L+ A++A+ A+ G N + Sbjct: 541 LVHEVQQPVSTGQHVHYLTISMGIACAPQDASHPEALLQMADIALNEARDAGRNQWVWYA 600 Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R D+ + + A+ N+E L Y P +L+ ++ G EALI+W I+ Sbjct: 601 NEMASQREDKREMARRIEKALTNNEFRLHYQPRYQLLTGQLAGAEALIRWQIAPDQWITP 660 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AEE +I I+ ++L R +D + W ++ +NI+ + ++L + + Sbjct: 661 DHFIPLAEESGLIATISDWVLMRACQDALGW-----GGDRYVSVNISPMEFRTSDLVQRV 715 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++K+ +R++L +E+V +P+ + ++ LR +G+ LT+DDFGT + L YL Sbjct: 716 ADVLAKSGLPATRLELEITENVTFEHPQHALEVMQGLRSLGVRLTVDDFGTGYAALGYLK 775 Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PF+ +K + S M +++ +++ II +A+ TI A+ I E + +L ++ C Sbjct: 776 TFPFNGLKIDRSWMKDFPESQQAQSVVAGIIALARAFALTITAEGIETEAQLNQLKQLSC 835 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 + Q + P+ + LL+ Sbjct: 836 EEGQGYFLGRPMPLAAFSTLLER 858 >gi|30260706|ref|NP_843083.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47525821|ref|YP_017170.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183543|ref|YP_026795.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|49481708|ref|YP_034808.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165871757|ref|ZP_02216401.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167635704|ref|ZP_02394015.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|167640674|ref|ZP_02398935.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|170688498|ref|ZP_02879705.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|170708228|ref|ZP_02898674.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|177653812|ref|ZP_02935913.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190568205|ref|ZP_03021114.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|196034672|ref|ZP_03102080.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|218901688|ref|YP_002449522.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|227816580|ref|YP_002816589.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|228913233|ref|ZP_04076871.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925736|ref|ZP_04088821.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931975|ref|ZP_04094868.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229600617|ref|YP_002865151.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|254684374|ref|ZP_05148234.1| sensory box/GGDEF family protein [Bacillus anthracis str. CNEVA-9066] gi|254722175|ref|ZP_05183964.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055] gi|254738838|ref|ZP_05196541.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western North America USA6153] gi|254743777|ref|ZP_05201461.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B] gi|254755062|ref|ZP_05207096.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum] gi|254762204|ref|ZP_05214048.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia 94] gi|301052198|ref|YP_003790409.1| sensory box/GGDEF family protein [Bacillus anthracis CI] gi|30254074|gb|AAP24569.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames] gi|47500969|gb|AAT29645.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177470|gb|AAT52846.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne] gi|49333264|gb|AAT63910.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164712482|gb|EDR18015.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488] gi|167511389|gb|EDR86774.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193] gi|167528963|gb|EDR91719.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442] gi|170126884|gb|EDS95765.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389] gi|170667523|gb|EDT18279.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465] gi|172081204|gb|EDT66280.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174] gi|190560697|gb|EDV14673.1| sensory box/GGDEF family protein [Bacillus anthracis Tsiankovskii-I] gi|195992715|gb|EDX56675.1| sensory box/GGDEF family protein [Bacillus cereus W] gi|218535823|gb|ACK88221.1| sensory box/GGDEF family protein [Bacillus cereus AH820] gi|227006009|gb|ACP15752.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684] gi|228827693|gb|EEM73434.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833929|gb|EEM79481.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846416|gb|EEM91430.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265025|gb|ACQ46662.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248] gi|300374367|gb|ADK03271.1| sensory box/GGDEF family protein [Bacillus cereus biovar anthracis str. CI] Length = 689 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 123/549 (22%), Positives = 249/549 (45%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ FA +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K S Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|269963795|ref|ZP_06178112.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269831475|gb|EEZ85617.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 775 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 123/444 (27%), Positives = 215/444 (48%), Gaps = 9/444 (2%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 ++I +K S + A D+LTG+PNR +RL L + + VM ID+D + Sbjct: 332 SEIERRKSSEMELAYQAKHDSLTGLPNRVYGSERLDLELSRAERMGS-NVLVMFIDLDHF 390 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND +G VGD+VL R+ ++ D+LAR+ G+ F +++ ++ FA Sbjct: 391 KQINDSMGHFVGDEVLKLAAERLHNAVRKTDLLARIGGDEFLLVIPDLQDADSAKRFATT 450 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P E ++AS+G + + + ++L A++AMY K G + + Sbjct: 451 VLSVFNEPFVWQNHEFFLSASVGMSVFPEDGDNAEQLLACADMAMYRVKQDGRDAFCFYD 510 Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + + ++ L A+ + L L Y PII L IVG EAL++W+ K+G ++ Sbjct: 511 HNMNQDLQRFLDLESRLRHAIAHDLLELYYQPIIDLNSGTIVGAEALMRWNDEKFGFVNP 570 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEG 813 EF+ IAE+ +I + F + + W+ A P+F+ +N +S ++L E Sbjct: 571 EEFISIAEKNGLIHQLGDFAIRQACHQAAQWQTVA---PLFVSVNFSSVQFRYCDQLLEQ 627 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ + ++ + +ES++ + +L LR +G LT+DDFGT S LSYL Sbjct: 628 IKQHLEESGLPAEMFDVEVTESLLFNHSNELMGMLDSLRALGAKLTIDDFGTGYSALSYL 687 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PFD +K + S + E ++ II MAK + I+A+ I + + L + Sbjct: 688 QKFPFDRLKIDRSFLQNMFENESDRELVNVIIAMAKALNLKIVAEGIEEQRHVDYLKNLN 747 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C++ Q H + PL LL + Sbjct: 748 CEFGQGFHYSRPLPAKDFEALLAK 771 >gi|229089610|ref|ZP_04220873.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] gi|228693728|gb|EEL47428.1| Sensory box/GGDEF [Bacillus cereus Rock3-42] Length = 689 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 121/549 (22%), Positives = 247/549 (44%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDAIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ A +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQMPGIHLFREHDDQFVMLIENIT-KERVELVAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IKEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSH 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|326795742|ref|YP_004313562.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea MMB-1] gi|326546506|gb|ADZ91726.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea MMB-1] Length = 674 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 133/485 (27%), Positives = 236/485 (48%), Gaps = 11/485 (2%) Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 +GR+ + R HW I S + + D + + + + Sbjct: 185 KGRISTDVRFLTKTG-IHWCHIEGYKESAGD----SFYLQVTDKQDIRLAEAELYRLKNY 239 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D+LT +PNR+S +L + + A D ++ ID+D +K +ND G VGD++L + Sbjct: 240 DSLTRLPNRESLYLKLDSQIAKVAQKDQ-SFGLLFIDLDGFKTVNDSFGHQVGDELLCGV 298 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 RRI +L L RL G+ F I++ N + + A + A P + + E+ VT Sbjct: 299 ARRIQGVLPRNTQLFRLGGDEFAILVEDILNDSNLIEVAQDVVSVSAQPYPVEDLEMLVT 358 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCL 713 AS+G + + + ++LK + AM +K G N+ + + R + L Sbjct: 359 ASVGISKYPDHGKSIDDLLKTSASAMCRSKALGYNNFCLYDNGMKQDYRAQLTLGGALRK 418 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A+E + L Y P IRL DE VG EALI+W HP+ G I +F+ IAEE +I + + Sbjct: 419 AIEEEQFELYYQPKIRLSDELTVGAEALIRWIHPEHGMIPPDKFIPIAEETGLILPLGEW 478 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 +++R + WR+ PPI + +N++ + + ++L E ++A +++T P ++L + Sbjct: 479 VIKRACHQLKEWREA-GHPPISLSVNLSGRQFMQSDLVEMVRATLAETGVDPKYLELELT 537 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891 ES++M + +++ L RK+G++L++DDFGT S L+YL P T+K + S ++ Sbjct: 538 ESMLMADAQQTIEKLHGFRKLGLTLSIDDFGTGYSSLAYLKKFPIQTLKIDRSFVSDLGI 597 Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 AI+++ I MA ++ +IA+ + I L C+ +Q A P+ Sbjct: 598 DADDDAIVKATIAMANSLNLKVIAEGVESRSQIDVLNDYQCEEVQGYLFAKPMNNIDFSS 657 Query: 952 LLKER 956 L + Sbjct: 658 YLSAQ 662 >gi|254409891|ref|ZP_05023671.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182927|gb|EDX77911.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Microcoleus chthonoplastes PCC 7420] Length = 570 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 122/438 (27%), Positives = 228/438 (52%), Gaps = 8/438 (1%) Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 +E +++ + + + D+LT +PN+ S ++ I +T T+M + +D++ +I Sbjct: 127 SELEQAKDQLDYLMYHDSLTNLPNQLSLREQFKQI---KSTHSQQLMTIMCVGLDRFNQI 183 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG +VGD +L ++ +R+ + D +ARL +F IIL + + A + + Sbjct: 184 NDDLGHSVGDRLLQAVAQRLVNGVTSEDYVARLGSGQFAIILPTTPHKKDAVFVAQTLLE 243 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697 + + ++EI VTASIG A + ++L A AM+ AK +GGN + + + Sbjct: 244 QFSQTFAIDDQEIFVTASIGMALYPRDGRDIEQLLNQANKAMFQAKQQGGNCHQFYSIAL 303 Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S SDRV +K L A+E EL + Y P + L +I+G EAL++W+HP+ G +S +F Sbjct: 304 SKGTSDRVALKTSLRYALERDELQVYYQPQLNLETGKIIGAEALLRWEHPERGLVSPIKF 363 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I I ++L+ + W+ P + I +N++ + +L + + Sbjct: 364 IPLAEETGLILPIGEWVLKTACQQTRHWQKM-GYPHLKIAVNLSGRQFQQLDLRHRLVKI 422 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++T P ++L +ES+++ N + + L L+ +G+ + +DDFGT S LSYL P Sbjct: 423 FTETGLRPEYLELELTESMLVENTDVAIRRLQALKALGVEIAIDDFGTGYSSLSYLQQFP 482 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 FDT+K + + + AI ++II MA ++ ++A+ + + ++ + + C + Sbjct: 483 FDTLKIDRCFIRNIQDNPSQAAITQAIIEMANTLDLKLVAEGVETDAELSFVVQHHCHKM 542 Query: 936 QDSHVASPLGFNSILKLL 953 Q + PL LL Sbjct: 543 QGYLFSKPLPAKEFESLL 560 >gi|149909836|ref|ZP_01898487.1| hypothetical protein PE36_08836 [Moritella sp. PE36] gi|149807168|gb|EDM67124.1| hypothetical protein PE36_08836 [Moritella sp. PE36] Length = 878 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 143/602 (23%), Positives = 269/602 (44%), Gaps = 20/602 (3%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG----ERQSLAVLGSGDIVWD 420 +I + + L V+L+ T+ + + A + S E +L + V+ Sbjct: 274 TLIVTGIGLIISLFVLLLRHTLYRRIRAEELAREKTRSLELVQNEYHNL-FEKVVEGVYS 332 Query: 421 WDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + + P +A G M + + +H +++ L + + ++ Sbjct: 333 ATLEGQFLKVNPALARAFGYEEPRQMQQAVEHIGRQLHRE-HQSYQVFLQTLLE-KKEVF 390 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 YE+ W+ + +G ++ Y G + ITE+K + + + A D LT Sbjct: 391 NYEWEGEDRHGNTIWLSENAYLNTADDGCVV-YQGTLDVITERKFNEQQLNYQANHDALT 449 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+ NR + + L L + V+ ID+D +KKIND G VGD L R+ Sbjct: 450 GLLNRTACQNFLEEYL-----QNKQWGVVLFIDLDGFKKINDTYGHGVGDLFLQKTADRL 504 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI--TVTAS 657 ++L+ D +AR+ G+ F I E + I A +++ + P+ L I VTAS Sbjct: 505 KQMLRKRDRIARIGGDEFVIYFEGEMSQHTIKQLAERLQREVTRPVLLDGSSIALHVTAS 564 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAV 715 IGF + ++L++A+LAMY K G + + F ++ + + D L A+ Sbjct: 565 IGFTFLGPHYQHARDILRDADLAMYEVKKNGKANYQVFSLALHEQVQRQTEFDDLLHSAL 624 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 +N E L + P++ L D G E L++W +PK G IS F+ +AE+ +I+ + L+++ Sbjct: 625 DNDEFSLCFQPVVCLKDARTRGFEVLLRWYNPKLGQISPDRFIPLAEKSLLIQPLGLWVI 684 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 + +++ IN++ + L D++L + + L+++ +P I+ +ES Sbjct: 685 TQALAGFRRLSLLQPDAGLYLNINLSPRQLQDDQLVQALPRLLTEAKIAPESIRFELTES 744 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894 + N + L LR +G + +DDFGT S L L P D +K + S + G + Sbjct: 745 ALDMNEQVVTERLSALRTMGFKIYIDDFGTGYSSLKRLVQFPIDGIKIDRSFVDGLEQDS 804 Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + ++ I+ MA+ + +IA+ + E+ L GC + Q + PL + + L Sbjct: 805 SKQVMVEVIVTMARLLNLQVIAEGVETEVQRTLLLEGGCRFAQGYLFSRPLPEVELSRQL 864 Query: 954 KE 955 + Sbjct: 865 EN 866 >gi|170740090|ref|YP_001768745.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46] gi|168194364|gb|ACA16311.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46] Length = 569 Score = 475 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 115/496 (23%), Positives = 228/496 (45%), Gaps = 22/496 (4%) Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 L R R + + + + + DI+ ++ Sbjct: 91 ILRAARRLREEGAVSLDLCHRDRT-------VQVSLSRVPG-----TGMVATLEDISARR 138 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + A D LT +PNR +RL LD A ++++D+D++K +ND L Sbjct: 139 AAEASAAETARLDPLTRLPNRLLLRERLGAALDRLARRGEG-CALLLVDLDRFKPVNDTL 197 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L + R+ ++ D +AR+ G+ F ++ + ++ A + I Sbjct: 198 GHPVGDALLEKVADRLRATVRAEDTVARIGGDEFVVLQSAVRDAADTTALAQRLVDLIGR 257 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 + +++ AS+G A +LK+A+LA+Y AK G F + Sbjct: 258 AYMIEGHLVSIGASLGIALAPQDGTDPDRLLKSADLALYRAKRDGRATFRFFEPTMDAQM 317 Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 + ++ D+ A+ E + Y P + L++E + G EAL++W HP G +S +EF+ +A Sbjct: 318 QARRQLELDMRQALARREFEIHYQPQLNLLEERLTGCEALLRWRHPVRGMVSPAEFIPLA 377 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE+ +I I +++ + D + W PI + +N++ + L + + + ++++ Sbjct: 378 EEIGLIVPIGDWVIRQACHDAVRWPR-----PITVAVNVSPAQFKGDRLVDTVVSALARS 432 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 R+++ +E +++ + ++ L RLR +G+ +++DDFGT S LSYL PFD + Sbjct: 433 GLPAPRLEIEITEGLLLQDDAQTLRTLHRLRDLGVRVSMDDFGTGYSSLSYLRAFPFDKI 492 Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + AI+R+I + +++ T +A+ + ++ + GC +Q Sbjct: 493 KIDRSFVRDMAQKPDGDAIIRAIAGLGRSLGMTTVAEGVETPEQMRRIRAEGCTDVQGYL 552 Query: 940 VASPLGFNSILKLLKE 955 V+ P+ + +L LL Sbjct: 553 VSRPIPADDLLALLAR 568 >gi|296135704|ref|YP_003642946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thiomonas intermedia K12] gi|295795826|gb|ADG30616.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thiomonas intermedia K12] Length = 1082 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 128/559 (22%), Positives = 264/559 (47%), Gaps = 20/559 (3%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIAT-----ILGLASGSMHGPIRNWLPYIHINDRDNF 464 + D+V+ D +G++ + + +H D Sbjct: 524 VLDNMRDVVYACDENGLLSYVNAAAIRAGLPTKMGVSLRELE-----LVTPVHTTDHKPV 578 Query: 465 ---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + L+S + + F + + + Q+ I R + +S G L +A+D+TE Sbjct: 579 PLEQLPLESALRGEPKEAEN-FLIESLEGQWRHYEITARRLLDSTGTPLGAAAVAHDVTE 637 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLRPTVMVIDIDKYKKIN 580 + + D LT +PN+ ++ L L ++ D++ + V ++DID++++IN Sbjct: 638 IRAVDRRLKWLIDHDELTELPNQTLVIESLERWLEAETSRDESRQLAVYLLDIDRFRQIN 697 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G A+GDD+L+ R+ L D LAR GN F ++ + + D A + S Sbjct: 698 DSFGHALGDDLLIETAARLKVALAPDDFLARWGGNAFAVLHPCTADQQALLDHAEQLLNS 757 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVS 698 + P L + I +TAS+G A +++++ A++AMY K G + + +S Sbjct: 758 LTEPFVLDGQTIFITASLGIARAPRDGRSATQLFSRADVAMYRCKANTPGRALLYTVDMS 817 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + ++ DL A+ + +++Y P + L +++G EAL++W HP+ G +S + F+ Sbjct: 818 QRGRELIEMETDLRHALAMEQFFVLYQPKVCLQTRQVIGAEALLRWQHPQHGLVSPATFI 877 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 + EE +I + ++L + + + W +Q P+ I +N + + L + + + + + Sbjct: 878 PLLEETGLIVPVGQWVLNAVCKQLQEW-EQQGKTPLPIAVNCSMRQLQGDLILRQVSSAL 936 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + +P ++L +ES+++ +PE L+ +LR++G++ ++DDFGT S L+ L +P Sbjct: 937 EHSGIAPGLLELEITESMMLRDPEHVSGLIVQLRELGVNTSIDDFGTGYSSLASLKRLPV 996 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 T+K + + + AI R++I MAK + +IA+ + + L ++GC+ Q Sbjct: 997 TTIKLDRAFVKDLPNDADDAAITRAVISMAKALHLIVIAEGVETQEQADFLQQLGCEAYQ 1056 Query: 937 DSHVASPLGFNSILKLLKE 955 + + + L + Sbjct: 1057 GWLFSQAVAPKRFAQYLAD 1075 Score = 96.6 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 1/183 (0%) Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + + + + L + + + L GL+ + L+ ++ +Q Sbjct: 326 WLISSTPLGTTGLALAVEVPTAELYAPVVDTLETGLLFVPGLVLLGLLVLDWQLRPLTQR 385 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + R A SG + + + + P + +LG + ++H++ Sbjct: 386 LHQANARVQNAFDYSGIGILMVNGQGEILDFNPAFSEMLGYTPAELR-QPHVVDDFLHLD 444 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 DR L G R R + ++ + + P+ N +G + + A D+ Sbjct: 445 DRGTVAAQLGGMADTEVGAYCAHRRYRHKNGRYRMLQWHVSPVKNEDGAVTSIVCYALDV 504 Query: 520 TEQ 522 T++ Sbjct: 505 TDE 507 >gi|159897159|ref|YP_001543406.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Herpetosiphon aurantiacus ATCC 23779] gi|159890198|gb|ABX03278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Herpetosiphon aurantiacus ATCC 23779] Length = 682 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 146/592 (24%), Positives = 265/592 (44%), Gaps = 9/592 (1%) Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427 A+ + I ++ ++ +Q + + D V D Sbjct: 88 PTAIDILTLPISTESLVLTLKTIIERSNLTQRLSRVEVWMQTMLANVSDGVVAIDQHGKI 147 Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVR 486 + G S N + I + D ++ + + L +E + Sbjct: 148 QWINSAAEHMTGWDYRSALQQDFNQVVVIRSSLNDQRIDVIAAALRNEPVFALPFERYLH 207 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 A D + + P+ N++G I I D T Q + E + + D+LTG+PNR+S Sbjct: 208 ARDGHATSITEHVTPLLNNDGQNNGAIVILRDHTAQLQMEEALYYQSLHDSLTGLPNRRS 267 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-F 605 F L+ L+ + ++++DID++K +ND LG +GD +L + +R+ L Sbjct: 268 FQLHLSRALEYQRHHHDYSFAIILLDIDEFKMVNDGLGYHIGDTMLTEIAQRLRRALYLP 327 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWT 664 D++AR G+ F I + + A +R+ P + +EI SIG T Sbjct: 328 GDVVARFDGDEFAIFFDRLPDLPAAFNAAQRIRQLFEDPFMIENGQEIFCNVSIGLELIT 387 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYL 722 S++ +++NA+LA+Y AKH G +E F + + + + + L LA++ E L Sbjct: 388 -SEVPIETVMRNADLALYRAKHTGRGGIEIFDQTLYANFSTRLHNETALRLALQRQEFRL 446 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 PII G E LI+W HP S +F+ IAEE +I + +MLE A + Sbjct: 447 FAQPIIDFEHSHCTGFEILIRWAHPDGRLRSPGQFLDIAEETGLIIPLGWWMLEVAAEQL 506 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W+ + M + + IN++ + LL ++L ++++ + + ++ L +E ++ N E Sbjct: 507 ERWQADSMMQHMTLAINLSPRQLLHSQLLPTLKSIFERYQFPRQQLHLEITEGALL-NTE 565 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900 R+ +L LR G+ L +DDFGT S L+YL P +T+K + S + + ++ +AI+R Sbjct: 566 RAEPILNALRHFGLHLHIDDFGTGYSSLTYLHRFPLNTIKIDRSFIQAALEDQRSLAIVR 625 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 +II +A+ ++ IA+ I I+ L +GC Q + P+ Sbjct: 626 TIINLAQTMQLATIAEGIETAEHIQVLRELGCQAGQGYFFSPPVPLEQAADF 677 >gi|108804381|ref|YP_644318.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM 9941] gi|108765624|gb|ABG04506.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM 9941] Length = 762 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 119/446 (26%), Positives = 216/446 (48%), Gaps = 7/446 (1%) Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + ++E+++ E + A D LTG+ NR F DRL + D R V+++ Sbjct: 307 VVALLRTLSERERLQERLEQQALHDPLTGLANRALFSDRLAHAASRANPLDCGRLAVLML 366 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K +ND LG VGD +LVS+ RI ++ D +ARL G+ F +++ ++ Sbjct: 367 DLDGFKSVNDSLGHEVGDALLVSVAGRIRACVRPSDTVARLGGDEFAVLIEEISDVGAAV 426 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + + P ++ AS+G A + +L++A+ AMY AK RG Sbjct: 427 RVAERILDRLGEPYSVGGVGRVAAASVGVAFGP--AREAKSLLRDADAAMYVAKERGKGR 484 Query: 692 VESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 E F R++++ ++ +L A+E E + Y PI+ E+V +EAL++W+ P Sbjct: 485 YEVFEPRMRNARAEKLRLEAELRAALERGEFAVHYQPIVSFATGEVVEVEALVRWERPGR 544 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + +EF+ +AEE +I I ++L R + W+ + + +N+++ L Sbjct: 545 GTVGPAEFLSVAEESGLIVPIGRWVLREACRQVREWQK-GGSRELALAVNLSASQLHHPR 603 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L ++ + + +KL +E + + + L L +G+ + LDDFG+ S Sbjct: 604 LVREVEEALGLSGLEARHLKLEITEQAAVEDAREAARRLEELSALGVRIALDDFGSGYSA 663 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL P DT+K + S + G A I+ ++I +AK++ + A+ E + L Sbjct: 664 LSYLRTFPVDTLKIDRSFIEGIGRDLQATSIVGAVIALAKSLNMCVTAEGTETEEQLAHL 723 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953 +GCD Q + + P + + L Sbjct: 724 RSLGCDLAQGYYFSRPASPEEVERKL 749 >gi|256822609|ref|YP_003146572.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM 16069] gi|256796148|gb|ACV26804.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Kangiella koreensis DSM 16069] Length = 629 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 131/574 (22%), Positives = 248/574 (43%), Gaps = 21/574 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + + + + + D + + + +L L + + Sbjct: 60 LQSKLTELEEVKSELEQSIRKLRVTMDAGYDGIVQVNSDGIPTAYNDTVLKMLNLTAREL 119 Query: 446 HGPI------RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + + L + + V D +F + Sbjct: 120 QSLSYRKICQHLFKNIKNPE---VVINQLRKALMKQDD--SGNILVEHNDGRFFECKAKA 174 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 +G + DIT+ K A+ D LT +PNR F +RL LDL+ Sbjct: 175 ---LELDGQTQGLVWTIKDITDLKLKEREARYLAYHDELTNLPNRTLFFERLEHALDLAK 231 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + L V+ +D+D++K +ND G A GD +L + +RI L+ D ARL G+ F I Sbjct: 232 RKEEL-LAVIFLDLDEFKTVNDTFGHAQGDLLLQKVAKRILVALREHDTFARLGGDEFVI 290 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + I + ++ ++ PI L ++ +T S+G A + + ++LK A++ Sbjct: 291 MLEDVEDREAIVNVLDRVKHALDTPITLGTNQVYITPSLGVAIYPEDGDDAQDLLKKADM 350 Query: 680 AMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY++K G N + + R+ ++ L A+ NSE +L Y P L D+ ++G Sbjct: 351 AMYNSKKHGKNTYSFYSNHLEQYSTYRLSMRTALRRALRNSEFFLEYQPKFSLSDKRMMG 410 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 +EALI+W++ + +S +EF+ AE MI I+ +++E+ RDI W + + Sbjct: 411 VEALIRWNNKE-TLMSPNEFLNEAESNGMIIPISQWVIEQACRDIAHW-KGDSKACCPVS 468 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 INI+ + L + ++A +++ S I++ +E + + E + + L IG+ Sbjct: 469 INISPRYFQHGCLVDDLKACVNRFKIDASCIEIEITEQAFIPDIENAIKRMHELNDIGVK 528 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915 +++DDFGT S +YL +P +K + S + E + +++ II +A +++A Sbjct: 529 ISIDDFGTGYSSFNYLMKLPVQQLKIDTSFIRSLEESEIQHSLVAEIIKIAHLFGLSVVA 588 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 + + E L CD Q + SP+ N Sbjct: 589 EGVEHEHIADLLMSYDCDLAQGFWLGSPIPANQF 622 >gi|254480327|ref|ZP_05093575.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma proteobacterium HTCC2148] gi|214039889|gb|EEB80548.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma proteobacterium HTCC2148] Length = 763 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 116/447 (25%), Positives = 233/447 (52%), Gaps = 19/447 (4%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + A+ D LT +PNR+ F ++L+ +L L+ + ++ +D+D +K+IND L Sbjct: 303 RTKNRLRKMAYYDALTSLPNRRLFTEQLSLLLKLAQRNKQT-LALLFLDLDNFKRINDSL 361 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILA------------RLSGNRFGIILISENNSLKIA 631 G + GD +L + +R+ + ++ D++A RL G+ F ++L + + Sbjct: 362 GHSAGDLLLREVGQRLSKCVRDSDVVAHYADPTAKIDVSRLGGDEFTVVLNDLDAPESVG 421 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A + +++ P+ + E+ +T SIG A +L+ ++ AMYHAK G + Sbjct: 422 VVAERLILALSEPMLIDGHELVITPSIGIAIAPEHANEVEGLLRCSDTAMYHAKASGKST 481 Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + S + DR+ ++ DL A++N EL L Y P + ++VG EAL++W HP+ Sbjct: 482 YLVYESSMEEAGLDRLTLENDLRKAMDNDELVLFYQPQVDTRSGKVVGAEALLRWMHPEQ 541 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G I +F+ +AEE+ +I + +++ + + ++ + P + +N+++ Sbjct: 542 GLIPPFKFIPLAEEMGLIGEMGDWVIREACKQVQTFAKKGVSLP-KVAVNVSALQFT-PS 599 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 +++++ + P+ ++L +E VVMG+ S L L+ +G+SL++DDFGT S Sbjct: 600 FTRRVKSILDELAVDPATLELELTEGVVMGDTNASVQALAELKDLGVSLSIDDFGTGYSS 659 Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL P D +K + S + ++E+ +++R+II MA+++ ++A+ + + + + Sbjct: 660 LSYLSRFPLDELKIDRSFVIEANNSEQGASLVRAIIAMAQSLGLELVAEGVETDEQYEFM 719 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954 T G IQ + P+ + LL Sbjct: 720 TTAGAHVIQGYMFSQPVPAEKLEPLLA 746 >gi|192359880|ref|YP_001981822.1| sensory box/GGDEF domain/EAL domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686045|gb|ACE83723.1| sensory box/GGDEF domain/EAL domain protein [Cellvibrio japonicus Ueda107] Length = 850 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 138/594 (23%), Positives = 270/594 (45%), Gaps = 35/594 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV------------------- 424 +Q + Y + + S + +W +D+ Sbjct: 256 LVQLQDLSRELYARAALQESETSYKAFITNSSEAIWCYDMQPRVDTGLPIAEQVEQIAAS 315 Query: 425 RDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483 V + +LG+ + G + N+ LD+F+ + ++ Sbjct: 316 AHLVEANRVLLNMLGVETLDDVLGQPLSESGS------TNYLFDLDTFIANGYQMVDHDI 369 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 + + + I + +G + R G D+T +K+ + + + D+LTG+PN Sbjct: 370 TRQDERGKKFYFQISCTGII-EDGYLRRIWGTTKDVTTRKRYEDKLRHQSLHDSLTGLPN 428 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R+ + + + +M+ID+D++K+IND LG VGD +L + R+ + Sbjct: 429 REKLYQDMASCFE--QRTAEQISALMLIDLDRFKEINDTLGHNVGDRLLQMIGPRLAAEM 486 Query: 604 KF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 P +ARL G+ F + L ++ + F + ++A +L ++ASIG A Sbjct: 487 AEVPGTVARLGGDEFAVFLPRIRSTHQAVVFGHRILDALAQEYDLEVFCTQMSASIGIAI 546 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELY 721 +++ A++AMY+AK + G + S R+ + +L A+ ++L Sbjct: 547 APYQAQDHHALMRYADIAMYYAKSQMLGLSIYSPDYDPHSPKRLAMMSELGRAIRENQLC 606 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 L Y P + L + G EALI+W HP+ G + +F+ IAE +I + ++LE Sbjct: 607 LYYQPKVVLDECRCYGFEALIRWIHPELGFVPPDDFIPIAEFTSLIHPLTAWVLENSIEQ 666 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 W+ Q + + +N+++++L+D + + ++ L++K +R++L +ES +M +P Sbjct: 667 CRHWQLQGLN--LSVAVNLSARNLMDENIPKLVERLLNKYQLPAARLELEITESSIMSDP 724 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899 R+ +L L ++G+ L++DDFGT S L+YL +P T+K + S + + I+ Sbjct: 725 NRALRILQHLHELGVHLSIDDFGTGYSSLAYLKRLPVQTLKIDNSFVRNMLGDLQDELIV 784 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 S I +A N+ T++A+ + E +K L MGCD +Q + P+ N+ + L Sbjct: 785 NSTIHLAHNLGLTVVAEGVENEELMKRLHDMGCDEVQGYFIGRPMTVNNADQWL 838 >gi|254517113|ref|ZP_05129171.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [gamma proteobacterium NOR5-3] gi|219674618|gb|EED30986.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [gamma proteobacterium NOR5-3] Length = 609 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 128/460 (27%), Positives = 228/460 (49%), Gaps = 23/460 (5%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 K+ + + A+ D LT +PNR+SF ++L IL S + ++ ID+D +K+IND Sbjct: 138 LKRQEDRLRYLAYFDPLTSLPNRRSFNEQLNRILKRSQRLNTFS-ALLFIDLDNFKRIND 196 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDIL------------------ARLSGNRFGIILIS 623 +G GD +LV +++R+ L+ D + ARL G+ F ++L Sbjct: 197 SIGHGRGDRLLVEISKRLINELREDDAISYYSDSSAEEEHDGNTEIARLGGDEFTVVLAD 256 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ + A+ + K+++ PI L VT SIG A + + +++NA+ AMY Sbjct: 257 VLHTDDVERIALRIMKTLSEPIPLQTHNPVVTPSIGIAMYPQDGEDAESLVRNADTAMYA 316 Query: 684 AKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + + + ++EDL A+ +L L Y P + + +V LEAL Sbjct: 317 AKADGRACFRFYNEEMNARSVEHLKLEEDLREAMRTDQLELRYQPQVETVTGAVVSLEAL 376 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W HP+ G IS ++F+ +AE I + ++L+ +AR + W D + + +NI+ Sbjct: 377 VRWKHPERGMISPADFIPVAESTGQIIELGEWVLKEVARHCVYW-DSIGLASFRVCVNIS 435 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 +L ++ + ++ P R++L +ES +M + E + L L +L+ +G+ L +D Sbjct: 436 PLQFNQPDLLHYIKGFLGRSGLDPHRLELELTESAIMTDGESNILKLSQLKSLGLDLAVD 495 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYG 920 DFGT S LSYL P +T+K + S + AI+ +II +AK + IA+ I Sbjct: 496 DFGTGYSSLSYLRRFPINTLKIDQSFVADMNSADGAAIVDAIIALAKTLNMRSIAEGIET 555 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 E + L + G D +Q + A PL + + + + Sbjct: 556 EEQLAYLAKRGVDLMQGFYFARPLYPEDVPNAIAQDYSET 595 >gi|91203573|emb|CAJ71226.1| conserved hypothetical response regulator protein [Candidatus Kuenenia stuttgartiensis] Length = 685 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 136/574 (23%), Positives = 257/574 (44%), Gaps = 16/574 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGD--IVWDWDIVRDRVTTTPDIATILGLASG 443 IQ + ER + G D + D +P I ILG Sbjct: 116 TIQQAKIRIQTETELHKSEERYRRLIEGLQDNYFFFTRDASGVFTYISPSIKNILGYTPE 175 Query: 444 SMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + R +L ++ ND S G ++ + E + + + ++ P+ Sbjct: 176 EFYTRYREYLTDHLVNNDAAQCLA--RSVKGIKQPPYEIE--MYHKNGATRTLQMQEAPV 231 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +S+ +++ GIA DITE K S ++ A D LT + NR+ F + L L + + Sbjct: 232 FDSSKNVISIEGIARDITEIKTSQSQLVFLADHDPLTCLFNRRRFKEELELRLLEAQRN- 290 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 +++ ++ +D+D +K +ND LG GD++L+ L+ + E L+ DILARL G+ F +IL Sbjct: 291 HIKGALLFLDLDNFKYVNDTLGHQHGDELLIKLSCILKERLRQTDILARLGGDEFAVILP 350 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + + + + + L + +T SIG A + + T+ +L NA++AM Sbjct: 351 N-TEEEQAQHISKQLVELTRNCLALDSLNPLHITVSIGIAMFPAHGDTAETLLANADMAM 409 Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G + F + K + +A+E + L PII + +I E Sbjct: 410 YQAKDEGRDRGCIFSLEHKIHIETQYDWKRRIKIALEQNSFALYLQPIINVKTRKITAYE 469 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 L++ + +F+ AE +I I+ +++ R I + + IF+ IN Sbjct: 470 VLLRLTEKNQEVVPPLKFLGTAERFGIIHEIDRWVVVNAIRIIKEL--KLHENGIFLEIN 527 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 ++ K DNEL ++ I + + P + +E+ ++ N +++ + L+ IG Sbjct: 528 LSGKAFSDNELLSIIKREIGENILRPEMLIFEITETAIIENIAKAQHFIATLKSIGCRFA 587 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917 LDDFG+ S +YL ++P D +K +GS + ++ +++ ++ A+ ++ IA+ Sbjct: 588 LDDFGSGFSSFNYLKHLPVDYLKIDGSFIQHLSQNSVDQHLVKGMVEAARGLKKLTIAEF 647 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + + L +G DY Q + PL L+ Sbjct: 648 VETKETFQLLKEIGIDYAQGHYFGKPLSVCDALQ 681 >gi|115523851|ref|YP_780762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] gi|115517798|gb|ABJ05782.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 783 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 151/657 (22%), Positives = 287/657 (43%), Gaps = 20/657 (3%) Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359 + Y +T + ++ + + A+L I + +G T Sbjct: 103 TLYAEPPLVGFLLLTRRAPIVVGGVTVGLLEYEAQFDAMLHKLIVIALISSLLGACAYYT 162 Query: 360 KR----------LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 R L + L+ + + + + + + Sbjct: 163 VRTLPLRALDRTLRDLDDAHRLIAESNATLCDQNGVLTERERELRAAQSVLKTRSNQLLD 222 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 A W + + V P++ +LG AS + + + Sbjct: 223 AQRLGRIGDWSYRVGNAEVWWAPELRHLLGYASNDFVSTRDAVMALHVGDGANRVLASQA 282 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + + +++ D + + M+N+ G I+ + G DI+E+K + E + Sbjct: 283 EVMRTGKVS-SVDVKLKRGDGTIGDFAVISKAMTNAEGRIVGFTGTIQDISERKAAEEQL 341 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A+ D LTG+ NR F + +L S +++D+D +K+IND +G A GD Sbjct: 342 ERLAYYDPLTGLANRALFHREIAEVLMRSGRHGLQAAL-LLLDLDGFKEINDTMGHAAGD 400 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 ++L + I L D L+R+ G+ F IIL + ++ A A+ ++I+ PI++ Sbjct: 401 ELLRKVAHLISRTLGNGDFLSRIGGDEFAIILTD-GDRGEVERTARAIIEAISRPIDIDR 459 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMI 707 EI ++ SIG AS T +++L++A+LA+Y AK G F + ++ + Sbjct: 460 GEINISTSIGIASMPRDGSTLTDVLRSADLALYRAKEDGRGCFRFFEPTMSAVVQHKMAL 519 Query: 708 KEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 DL A N+ L + Y P I L +++ EAL +W HP +G++ SEF+ IAE + Sbjct: 520 SRDLRHALGGNAGLDVHYQPQIELSSGQVISYEALARWTHPSFGDVPPSEFIPIAESSNL 579 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + L++L R AR +W DQ P + +N+++ + + + ++ +T P Sbjct: 580 ICDLGLWVLRRAARQAKAWLDQ-GEPARSVAVNVSAAQIWHTDFAADVMQVLQETGLPPQ 638 Query: 827 RIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 + L +ES++ + E R R +L L+++G+ L LDDFGT S YL +PFDT+K + Sbjct: 639 LLCLELTESLLADHAEGRVRSVLTELKRLGVRLALDDFGTGYSSFGYLTQLPFDTLKIDR 698 Query: 886 SLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + G A +L+ +I + + + TI+ + + ++ L + CD +Q ++ Sbjct: 699 VFIKGIAHSDRARRLLQGVIALGRGLGMTILMEGVEQAEELAVLAELDCDVVQGYYL 755 >gi|307321688|ref|ZP_07601078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sinorhizobium meliloti AK83] gi|306892652|gb|EFN23448.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sinorhizobium meliloti AK83] Length = 772 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 128/441 (29%), Positives = 224/441 (50%), Gaps = 7/441 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ + I A D LTG+PNR F +++ +L+ D + +D+D +K IN Sbjct: 332 ERKRAEDRIGFMAHHDALTGLPNRVLFEEQVAGMLEEIRERDQW-AVLAFLDLDDFKLIN 390 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639 D LG A GD++L + R+ ++ D + R+ G+ F I+L + +R Sbjct: 391 DSLGHATGDELLKIVAGRMRAAVRRSDSVVRVGGDEFIILLNGLPKERDVVLSRLEDIRT 450 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +IAMP+ L R + V+ S+G A + + T+ E+L NA++AMY AK G N+++ F Sbjct: 451 AIAMPVQLQGRSLQVSCSMGVACFPNQGKTAGELLANADMAMYRAKELGRNNIQVFTEEM 510 Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 +++ +E+L A+ E L + P + L I EAL++W HP G IS + F Sbjct: 511 AARAHEKLQSQEELREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAF 570 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I I ++L R + +W+D PP+ + +N++++ + + A+ Sbjct: 571 IPLAEETGLIVPIGDWILRTACRQLKAWQDAGL-PPLIVSVNVSARQFRERNWAARVAAV 629 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T ++L +ES++M + + + L IG+ L +DDFGT S LS L P Sbjct: 630 LEETCLEARYLELELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFP 689 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S +T +AI +II +A+ + +IA+ + E ++ L + GCD I Sbjct: 690 VRRLKIDRSFVTDIPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCDEI 749 Query: 936 QDSHVASPLGFNSILKLLKER 956 Q + PL LL Sbjct: 750 QGYFFSQPLPGEDFEVLLSSE 770 Score = 47.3 bits (111), Expect = 0.015, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 456 IHI-NDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYI 513 +H + E R + D W++ P+ + +G I+ + Sbjct: 100 LHPHEFAQAVADTERRVLETGEPIFGIEERAIVTKDRD-RWLMTSKVPLRSKSGRIIGIV 158 Query: 514 GIANDITEQKKSLEGILCNAF 534 GI+ DI+++K + + A Sbjct: 159 GISRDISDRKAAERLLEGQAR 179 >gi|109898000|ref|YP_661255.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica T6c] gi|109700281|gb|ABG40201.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica T6c] Length = 1524 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 133/563 (23%), Positives = 262/563 (46%), Gaps = 16/563 (2%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 D A + D V + + + I + L ++ +D Sbjct: 966 QEDLRLFGEAYKHTRDWVLVCNRHTVPMAANQAFCNTFNIDEQQ---DIASQLKLVY-DD 1021 Query: 461 RDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRYIGIA 516 + S + + E ++ + + +++ I+ + N DI Y+ I Sbjct: 1022 QQAGLLSFWSKLESLEASEDWRGEDQIMLQNEEVRDVLVYIKAVACINDVTDIDSYLIIL 1081 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DI+E KK+ + ++ A D LTG+PNR LDR+ + + + + ID+DK+ Sbjct: 1082 SDISEHKKAQQALIKLANFDALTGLPNRALLLDRVDHAIYQAQRSAST-LGLFFIDLDKF 1140 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND LG GD +L ++ R+ LL+ D +ARL G+ F +++ + + + A Sbjct: 1141 KQVNDSLGHNAGDTLLQEISARLLNLLRKEDTIARLGGDEFVVLIENVHTIDDLTHLASQ 1200 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + I P+ L ++V++SIG A + + E+L+NA++AMYHAK G +H + F Sbjct: 1201 IIEIIDTPVQLENHLVSVSSSIGIALYPDDAQDAQELLQNADIAMYHAKENGRSHFQFFT 1260 Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R+ ++ DL A + +L Y PII + +I G E L++W G +S Sbjct: 1261 AKMNVLAQQRLALESDLKYAHSHQQLENYYQPIIDISRNKIAGFELLMRWFTDT-GKVSP 1319 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AEEL +I+++ L +ER W+ ++ +N++++ + + + Sbjct: 1320 GRFIPVAEELGLIESMTLQAMERALPMFKHWQANGFDG--YLSVNLSARHFESLQSIKDV 1377 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A ++ ++ +ES +M + +++ + + LR+ G S+ LDDFGT S L YL Sbjct: 1378 IAFLASNALPVEMVRFEITESALMKDYQKAIIYMKHLREAGFSIALDDFGTGYSSLKYLK 1437 Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P +K + S + + A++ +I+ MA++++ +A+ I + + C Sbjct: 1438 EFPLSVIKVDKSFVDDIGINKNNEALIETILRMAQSLDMYCVAEGIETKEQVAFFKEHDC 1497 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 ++Q + + P+ L+ E Sbjct: 1498 QFLQGFYFSRPVALADTFALIDE 1520 Score = 89.2 bits (220), Expect = 3e-15, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 2/155 (1%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 LI + + R +LA+ S VW+WD D V + Sbjct: 817 LIAYIFWKMRSLQAQRLLSAHKEAVQSKGRLTLALQASNSDVWEWDEKSDTVQAS-RFHD 875 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 LG + + L IH D++ + SF+ +R+R+ + + W Sbjct: 876 ELGYENKTGAVSREEHLSLIHNRDKEMYLARWHSFLEQEDRVFDVTYRMRSHNGHWLWFR 935 Query: 497 IRIRPMSNSNGDI-LRYIGIANDITEQKKSLEGIL 530 + R +G +IT+ E + Sbjct: 936 DVGNVTGGVASEHNQRVVGTYTNITDSIAEQEDLR 970 >gi|188583702|ref|YP_001927147.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi BJ001] gi|179347200|gb|ACB82612.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi BJ001] Length = 574 Score = 475 bits (1223), Expect = e-131, Method: Composition-based stats. Identities = 121/451 (26%), Positives = 211/451 (46%), Gaps = 18/451 (3%) Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + D+TE A Q+ LTG+ NR DRL L +A D V++ Sbjct: 122 GFALTFEDVTEL----LRGAALARQEPLTGLCNRVGLHDRLDAALAEAARTD-APLAVLM 176 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN---- 626 +D+D++K +ND LG VGD +L + R+ + + D++ARL G+ F II ++ Sbjct: 177 LDLDRFKAVNDTLGHPVGDALLRKVAERLRKATRSGDVVARLGGDEFAIIQGGPSSGAEQ 236 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A + + + + V S+G A + + ++LK+A+LA+Y AK Sbjct: 237 PQAAEALARRLVDLVGRTYVVDGHMLNVGVSVGVALSPADGRNADDLLKHADLALYRAKA 296 Query: 687 RGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G F + + ++ DL A+ + L + P I+L +IVG EAL++W Sbjct: 297 EGRGTHRFFEPAMNAQMQARRSLEIDLRRALALKQFDLAFQPQIQLETGQIVGFEALLRW 356 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 +HP+ G +S + F+ +AEE+ +I I + L R+ W P I +N++ Sbjct: 357 NHPERGPVSPALFIPLAEEIGLIVGIGEWALRTACREAAGW-----TQPASIAVNLSPVQ 411 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L E + ++++T P+R++L +E ++ N + +L LR +G+ +++DDFG Sbjct: 412 FRGGRLVETVMHVLAQTGLDPARLELEITEGALLENTDSVLDVLNGLRALGVKISMDDFG 471 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEI 922 T S LSYL PFD +K + S + G AI+R+I + ++ A+ + Sbjct: 472 TGYSSLSYLQKFPFDKIKIDQSFVRGMEGNAECGAIVRAIARLGASLGMRTTAEGVETAT 531 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + GC +Q P+ LL Sbjct: 532 QLDAIRAEGCTEVQGYLTGRPMPAAQAAALL 562 >gi|298485243|ref|ZP_07003336.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160231|gb|EFI01259.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 897 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 150/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + + P I +S + G L + Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGHK---LSEL 392 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + N + + Q EF+ R + + +W + I + N ++ YIGI Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT+ K + + I A+ DNLT + NR +F+ L D + +++++DID + Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFVRDTDTPMSLLLVDIDNF 509 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND LG GD +L+SL RR+ L D+LAR + N F ++L + + A Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDN-TDQEAGQATASQ 568 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++ P+ + + I+VT S+G A ++KNA LA++ AK G + V+ F Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628 Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 ++ S ++ ++ +L A+ +EL + Y P + L+ ++G+EAL++W+HP+ G I Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +F+ +AEE +I I ++ + R + + IN++ K D EL + Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ + PS ++L +E +++ E +R L L+K+G+SL ++DFGT S SYL Sbjct: 748 AAILREEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMNDFGTGYSSFSYLK 807 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S + E + I ++I MA N++ ++A+ I + L R C Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867 Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 D Q P+ +++ LK R+P + Sbjct: 868 DVGQGYLFDKPIPGEELIEKLK-RYPRRPSA 897 >gi|113970492|ref|YP_734285.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113885176|gb|ABI39228.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 697 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 138/569 (24%), Positives = 264/569 (46%), Gaps = 10/569 (1%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + I + + + V+ I + I + + + G Sbjct: 131 RRSIADRIGEHNQLLNTLLSNIDAFVYMKSIDGKYLYANHKIVELHNRSLSDIIGKTD-- 188 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 L ++ N D + + E V AD P+ + Sbjct: 189 LELMNENFADPLMEMDKQVFQSGLRKSTQEI-VVGADGIERSFWSIKVPIKLPGQEPA-L 246 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 +G + +ITE + E + DNLTG+PN+ F L LD + + V++I+ Sbjct: 247 VGFSTEITELLQLKEHLEYQRVTDNLTGLPNQHKFEQSLQLALDNAKRSKQ-QLAVLLIN 305 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 D++K +N+ LG ++++ + RR+ + LAR S F I+L ++ ++A Sbjct: 306 FDQFKYVNNALGHESANEIIKAAARRLDQCDWLSGSLARFSSGDFAILLAKTGSADEVAM 365 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A +R A P + + +TAS+G +S+ + ++K+AE AMYHAK +G + + Sbjct: 366 VAERLRMVCAEPYRVAGQVFHLTASVGVSSYPADGDMVWHLIKHAESAMYHAKDQGRDQI 425 Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + +S S+R++++ DL +A+ + L Y P IRL D+++ G+EAL++W+ P G Sbjct: 426 QFYSAHLSKAVSERILLERDLRIALIEKQFELYYQPKIRLADKQVAGVEALLRWNRPMHG 485 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 +S + F+ +AE L +I I +++E + + +W Q I I +N++ L + L Sbjct: 486 FMSPALFIPLAESLGLINQIGDWVIETACQQLSAWSTQGLGE-IQIAVNLSPSQLTSSTL 544 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ L+++ P+ +++ +ES++M NPE + L LR++ I L +DDFGT S + Sbjct: 545 LDRVKLLLAQYAIKPNMLEMEVTESMMMHNPEEAISKLQALRELNIQLYIDDFGTGYSSM 604 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL +P + +K + S + + + II +A + ++A+ + + L Sbjct: 605 SYLKRLPINALKLDRSFIIHMATDPRDADVCEGIIELAHKLGLDVVAEGVETQAQYDALL 664 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957 GCD IQ + PL + + L + Sbjct: 665 ERGCDIIQGYLYSRPLPIEQVSRFLLKHL 693 Score = 38.4 bits (88), Expect = 7.1, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 20/141 (14%) Query: 398 QGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIA--------TILGLASGSMHG 447 Q + + LA + +G ++ D + ILG + Sbjct: 7 QDADTQVQLIQLAPLLNQAGVYIFTKDHADRYTFVNEAVCKFYQASLPEILGQKAEQFL- 65 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + D+ + L E V + P+ + NG Sbjct: 66 -ELGLAKILREGDK--------RVLQQGEELLMEEELVVRKTREKRLFWSIRIPLRDING 116 Query: 508 DILRYIGIANDITEQKKSLEG 528 DI GI+ DIT ++ + Sbjct: 117 DISGLFGISIDITGRRSIADR 137 >gi|330466330|ref|YP_004404073.1| diguanylate cyclase [Verrucosispora maris AB-18-032] gi|328809301|gb|AEB43473.1| diguanylate cyclase [Verrucosispora maris AB-18-032] Length = 711 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 130/574 (22%), Positives = 247/574 (43%), Gaps = 18/574 (3%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 A + + R G+ + D+ + A +LG + M N Sbjct: 143 ARDDVERALRDSEARFRAVFRGAAIGIGIADVDGQIIDVNQPFADMLGYSIEEM--RQLN 200 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 H +D + + + + E R D W + + + + +G Sbjct: 201 VTALFHHDDAPGMWELYGELIEGKHESARVEKRYYRKDGTSVWTDLAVSLIRHDDGRPRF 260 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 I +A DIT++ + + A D LT +PNR F + L+ +L S V + Sbjct: 261 TIAVAEDITQRYELQRRLRFQALHDPLTELPNRTLFFETLSRLLSASGR-----VGVCFL 315 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKI 630 D+D +K IND LG VGD +L+++ RR+ + +AR+ G+ F I++ + + Sbjct: 316 DLDGFKAINDSLGHDVGDRLLMTIARRLAGCVAEYGYLVARMGGDEFVILVDGDAGVDNM 375 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A +++ P+ + + ++ V+AS+G + +++E++K A+ +Y AK G Sbjct: 376 IAVAELALTAVSAPVFIDDHQLMVSASVGIVASDLVGTSAAELMKAADTTLYWAKAEGRG 435 Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 + D + L +A++ E L Y PI+ L+D ++ +EAL++W HP+ Sbjct: 436 RWAVYDPERSARDIARSTLLAGLPVALDRDEFVLHYQPIVSLLDGRMLAVEALVRWQHPE 495 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G I F+ +AEE +I + ++L + RD W + + +N+A++ Sbjct: 496 LGLIGPDRFIGLAEETGLIVRLGEWVLRQACRDARRWHVDFPEARLVVSVNLAARQADAP 555 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + + +S + ++L +ES VMG+ L RL ++G+ L +DDFGT S Sbjct: 556 VIVDTVADALSSSGLPAELLQLELTESAVMGSGGEPLRTLYRLAELGVRLAVDDFGTGYS 615 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--------TEKRIAILRSIIPMAKNIETTIIAKDIYG 920 L+YL +P +K + G + I+ +++ +A +E + A+ + Sbjct: 616 NLAYLRRLPITCLKLAAPFVEGIRGDEPDAADHRDERIVDALVRLAHALELWVTAEAVET 675 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 E + L + CD Q P +I L Sbjct: 676 EPQAERLRALRCDSAQGRLFGPPAPAAAISTRLA 709 >gi|229541268|ref|ZP_04430328.1| diguanylate cyclase/phosphodiesterase [Bacillus coagulans 36D1] gi|229325688|gb|EEN91363.1| diguanylate cyclase/phosphodiesterase [Bacillus coagulans 36D1] Length = 559 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 120/529 (22%), Positives = 235/529 (44%), Gaps = 21/529 (3%) Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 P + M + + + F + + + +F + +D Sbjct: 43 PAFKFVYVNKEEQMEKTGKFLQDVLEEEEAARFEYFCQTALEDNKA---VDF-IHHSD-A 97 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ---DNLTGIPNRQSFL 548 + + M+ I I D+T E +L +A D LTG+ NR + L Sbjct: 98 RRILHTSLAGMNGGE----WVIAITRDVTAL-LDGERMLPDARTYQLDPLTGLWNRHALL 152 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 DRL + P V+ ID+D++K ND+LG VGD++L + R+ +L Sbjct: 153 DRLNRKTAEAKK-GAPHPAVLYIDLDRFKYFNDILGQHVGDEILKRIAIRLKQLPFSDYE 211 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 + R G+ F ++ + ++ A + P + + +T S+G + + Sbjct: 212 VYRQGGDEFIVLTAGC-SREEVKQMAEQILALFYDPFKIEGEDYFLTPSVGISLFPEDGE 270 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHP 726 ++K+A+ A++ K RG H + + ++++ L A+E +EL + Y P Sbjct: 271 DGETLIKHADTALFKVKERGKGHFLFYSKKMDADFHNYILMEAHLRRAIEKNELAVHYQP 330 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 ++L +I EAL++W +PK+GN+ +F+ +AEE +I +I ++++ + I WR Sbjct: 331 QVQLDTGKIKSFEALLRWRNPKFGNVPPLKFIPLAEETGLITSIGAWVIDHVCAQIAQWR 390 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 Q + +NI+ K LD L + + K S +++ +E M + Sbjct: 391 -QKGWAGFRVAVNISPKQFLDPGLAGLIGRTLEKYKLPASVLEIEITEGA-MEDKGHILK 448 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904 +L L+++G+++++DDFGT S L+YL P D +K + S + ++K AI ++II Sbjct: 449 VLSSLKEMGLTISVDDFGTGYSSLNYLKKFPVDILKIDQSFVRELENSQKDAAITKTIIH 508 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +A + ++A+ + + ++ L C Q + P+ + K L Sbjct: 509 LAHQLGLEVVAEGVEEQGQVEFLQSARCQKAQGYFFSRPVPAEEVEKQL 557 >gi|332993933|gb|AEF03988.1| sensory box protein [Alteromonas sp. SN2] Length = 1514 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 130/587 (22%), Positives = 255/587 (43%), Gaps = 32/587 (5%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + L + ++ + V+ ++ + G Sbjct: 939 VRMTGTLKNINHLKEAEEQLNLFKRSIENISEGVFITTTQFKFISVNNAYCSYTGETREQ 998 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 ++ +++ + F + + + G E + + + M + I + + Sbjct: 999 ALASYLHF--HLYPD---AFTEEIKKTLKTK-GNWSGEVESVRVNGERYEMELNIDAVHD 1052 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 +G I ++G+ +DIT +K + + +L A D LT +PNR + + Sbjct: 1053 DDGKISHFVGVFSDITSRKSTEKELLKLANIDPLTELPNRSFY-----QASHQNLVRKGA 1107 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 T++ +D+D +KKIND LG GD ++ + +R+ + RL G+ F +++ Sbjct: 1108 PHTLLCLDMDNFKKINDSLGHQTGDILIKQIAKRLQRITGKNATCYRLGGDEFSVLMEDS 1167 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + +A + ++A P + ++E + AS+G A + T EMLKNA+ AMY A Sbjct: 1168 ADIHTVTHYAQNLLDTLARPFIINKQEFVLGASLGIAFFPDDGNTPQEMLKNADTAMYFA 1227 Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K+ GGN + F ++ ++ I+ + +++ + Y P + + ++V +EAL+ Sbjct: 1228 KNNGGNSYQFFSGEMNQNAVRQLQIENLIRQGIKDDLFTVYYQPKVDIASGKLVSMEALV 1287 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +++HP+ G +S +F+ +AE+ I I +L + D W Q + +NI+ Sbjct: 1288 RFEHPQKGIVSPGQFIPLAEQTGQIIEIGEQVLRKACVDTKRWVSQGLFTG-RVAVNISV 1346 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 K +L + + ++S+ SP ++ +E +M +PE ++ RLR+ GI L LDD Sbjct: 1347 KQFELPDLDDRINRILSEVGLSPLHLECEITEGTLMEDPENGLRMMSRLRERGIHLALDD 1406 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT-------- 912 FGT S L+YL P +T+K + + + + + +II +A N+ Sbjct: 1407 FGTGYSSLAYLKRFPLNTLKIDKAFIDDIAKSSVDRHMAAAIINIAHNLGLKVVAEGVEE 1466 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 E + L R C+ +Q + PL KLL E L Sbjct: 1467 --------EEQLNILRRYDCEMLQGFLYSRPLNAERFEKLLSENQKL 1505 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 4/170 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVW 419 + ++ +++ I I +Q I ER L + SGD +W Sbjct: 790 YIARPPWLHSVALVFYALILTIVLAFIIRQYQLRKSNQLSIRESEERLKLTLWSSGDELW 849 Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 DWD+ R +V T L + IH ND R L S + + Sbjct: 850 DWDVYRGQVYRANTWGT-LDFPQDDIRTTGAYDAN-IHPNDIGRVRDALRSHLEGKSDFY 907 Query: 480 QYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528 + +R + NQ+ W++ R + + + N +R G +I K++ E Sbjct: 908 ELAYRAKTFKNQWIWLLDRGKVVERDHNQQPVRMTGTLKNINHLKEAEEQ 957 >gi|114047727|ref|YP_738277.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] gi|113889169|gb|ABI43220.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-7] Length = 697 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 136/569 (23%), Positives = 265/569 (46%), Gaps = 10/569 (1%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + I + + + V+ I + I + + + G Sbjct: 131 RRSIADRIGEHNQLLNTLLSNIDAFVYMKSIDGKYLYANHKIVELHNRSLSDIIGKTD-- 188 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 L ++ N D + + + E V AD P+ + Sbjct: 189 LELMNENFADPLMEMDKQVFQSGLRKSKQEI-VVGADGIERSFWSIKVPIKLPGQEPA-L 246 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 +G + +ITE + E + DNLTG+PN+ F L LD + + V++I+ Sbjct: 247 VGFSTEITELLQLKEHLEYQRVTDNLTGLPNQHKFEQSLQLALDNAKRSKQ-QLAVLLIN 305 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 D++K +N+ LG ++++ + RR+ + LAR S F I+L ++ ++A Sbjct: 306 FDQFKYVNNALGHESANEIIKAAARRLDQCDWLSGSLARFSSGDFAILLAKTGSADEVAM 365 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A +R + P + + +TAS+G +S+ + ++K+AE AMYHAK +G + + Sbjct: 366 VAERLRMVCSEPYRVAGQVFHLTASVGVSSYPADGDMVWHLIKHAESAMYHAKDQGRDQI 425 Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 + + +S S+R++++ DL +A+ + L Y P IRL D+++ G+EAL++W+ P G Sbjct: 426 QFYSAHLSKAVSERILLERDLRIALIEKQFELYYQPKIRLADKQVAGVEALLRWNRPMHG 485 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 +S + F+ +AE L +I I +++E + + +W Q + I +N++ L + L Sbjct: 486 FMSPALFIPLAESLGLINQIGDWVIETACQQLSAWSTQGLGE-VQIAVNLSPSQLTSSTL 544 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + ++ L+++ P+ +++ +ES++M NPE + L LR++ I L +DDFGT S + Sbjct: 545 LDRVKLLLAQYAIKPNMLEMEVTESMMMHNPEEAISKLQALRELNIQLYIDDFGTGYSSM 604 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 SYL +P + +K + S + + + II +A + ++A+ + + L Sbjct: 605 SYLKRLPINALKLDRSFIIHMATDPRDADVCEGIIELAHKLGLDVVAEGVETQAQYDALL 664 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957 GCD IQ + PL + + L + Sbjct: 665 ERGCDIIQGYLYSRPLPIEQVSRFLLKHL 693 Score = 40.3 bits (93), Expect = 1.7, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 20/141 (14%) Query: 398 QGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIA--------TILGLASGSMHG 447 Q + + LA + +G ++ D + ILG + Sbjct: 7 QDADTQVQLIQLAPLLNQAGVYIFTKDHADRYTFVNEAVCKFYQASLPEILGQKAEQFL- 65 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 + D+ + + L E V + P+ + NG Sbjct: 66 -ELGLAKILREGDK--------RVLQQGQELLMEEELVVRKTREKRLFWSIRIPLRDING 116 Query: 508 DILRYIGIANDITEQKKSLEG 528 DI GI+ DIT ++ + Sbjct: 117 DISGLFGISIDITGRRSIADR 137 >gi|148358887|ref|YP_001250094.1| inner membrane protein/sensory box protein LssE [Legionella pneumophila str. Corby] gi|296106935|ref|YP_003618635.1| inner membrane protein PLUS sensory box protein LssE [Legionella pneumophila 2300/99 Alcoy] gi|148280660|gb|ABQ54748.1| inner membrane protein PLUS sensory box protein LssE [Legionella pneumophila str. Corby] gi|295648836|gb|ADG24683.1| inner membrane protein PLUS sensory box protein LssE [Legionella pneumophila 2300/99 Alcoy] Length = 526 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 134/498 (26%), Positives = 246/498 (49%), Gaps = 16/498 (3%) Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + F + + E D + R + I+ + D+T Sbjct: 29 EEFLKQIKELYNNPKQESFDELHF--KDGKIF---ERYSQPHWLDNKIVGRVWSYRDVT- 82 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + A D+LTG+PNR + DRL ++ N +V +DID +K IND Sbjct: 83 ---LRTRLAYQANHDSLTGLPNRTALYDRLEHAINYCKRL-NTSLSVFFLDIDNFKLIND 138 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG GD +L +RR+ ++ D +AR G+ F ++LI + A + K++ Sbjct: 139 SLGHDAGDILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLI-TTEPKDVILVAQNILKAV 197 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 A PI L +E+ VT SIG + + I ++ +LKN++ AMY AK G N+ + + S + Sbjct: 198 AQPIKLPTQEVIVTTSIGISLFPKDGIDANTLLKNSDTAMYLAKKEGRNNFQFYNNSINQ 257 Query: 702 SDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 ++ + A++N+E +++Y PI L + E+VG EALI+W HP G +S EF+ Sbjct: 258 QSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRNGELVGAEALIRWGHPAIGLLSPDEFIP 317 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAEE +I + ++L +W+ +P I I +N++ + L ++ E ++++ Sbjct: 318 IAEETGLINQVGEWVLRNACIQNKTWQ-LMGLPHISISVNVSWRQLKNSNFIEIAESVLK 376 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 ++ P +++ F+ES ++ +L ++ ++GI + +DDFGT S LSYL PF+ Sbjct: 377 ESRLDPQYLEIEFTESTMIQKSTPIDSMLVKISQLGIKMAIDDFGTGYSNLSYLKTFPFN 436 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + + +I+ +II MA ++E ++A+ + + + GCD +Q Sbjct: 437 KLKIDRSFIQNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQG 496 Query: 938 SHVASPLGFNSILKLLKE 955 P+ + +KL+++ Sbjct: 497 FLYGLPVKADQFVKLMQK 514 >gi|119898976|ref|YP_934189.1| GGDEF/EAL/PAS-domain-containing protein [Azoarcus sp. BH72] gi|119671389|emb|CAL95302.1| GGDEF/EAL/PAS-domain containing protein [Azoarcus sp. BH72] Length = 691 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 120/441 (27%), Positives = 211/441 (47%), Gaps = 6/441 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I + A D+LTG+PNR F + + L + + +M +D+D++K+ Sbjct: 244 IDRLRDERSRAYQLASHDHLTGLPNRLLFTELANSHLSRARRS-HAPFVMMFLDLDRFKR 302 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L + R+ + ++ DI+ARL G+ F ++L + + A + Sbjct: 303 INDTLGHRVGDLLLQEVALRLRQTVRETDIVARLGGDEFVLLLTELDALDDASRVARKLI 362 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 ++I P+ L EI + S+G A + M++NA+ AMY AK G + S Sbjct: 363 EAIGQPMVLDGHEIEMRPSVGIAIHPRDGMDVEAMMRNADSAMYEAKRSGSGRFHYYDPS 422 Query: 699 SFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + A+ +E L Y P + L + LEALI+W HP+ G + E Sbjct: 423 LNSRSSLQLDLNGRFRRAILGNEFVLHYQPRVTLNGFRVTSLEALIRWQHPERGLVPPGE 482 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ AE+ ++ + +++ R I +W + + + IN++ K L D+ E ++ Sbjct: 483 FIEYAEQEGLVVELGNWVVREACRQIAAWIAEGLEI-VPVAINVSPKQLRDHSFVEVIRE 541 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ P+ +++ +E V+ + ER R L L +G+ + LDD+GT S LSYL + Sbjct: 542 SVAHYGIRPALLEIEITERCVVEDFERPRAALETLSALGLKIALDDYGTGFSSLSYLKQL 601 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S ++ AI+ S I + N+ T+IA+ + + L GCD Sbjct: 602 PIDIIKIDRSFISDIRNARHDAAIVASTIALGHNLGLTVIAEGVETREQVIYLRTAGCDE 661 Query: 935 IQDSHVASPLGFNSILKLLKE 955 +Q + P ++I LL Sbjct: 662 VQGYYFQKPAPPDAIRPLLAA 682 >gi|218532268|ref|YP_002423084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Methylobacterium chloromethanicum CM4] gi|218524571|gb|ACK85156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Methylobacterium chloromethanicum CM4] Length = 817 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 151/755 (20%), Positives = 280/755 (37%), Gaps = 36/755 (4%) Query: 219 IPTFAMAWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWN 276 W + + F L I A + ++ + L Sbjct: 55 FVFGCSVWSLHFVAMLAFQPGAQAAYGLLPTAASIGIAVAGALIAFLIWCRADHDPLKVA 114 Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 + + A + L + G R Sbjct: 115 AAGLVLAAAISGMHYAGVGAMAANSLLAFEEALVHASLGLCATLAVIALARAGDLAGLGR 174 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDII--------QPALVGGLVLIVILIGFTVIQ 388 + + L M + L + L+ + + + Sbjct: 175 RIEVSLWLALAICGLHFTGMTALTVAPAAPVEGGGVVLGSTQLGLAVGLVSLAVLAAGLT 234 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +L + + + R L + ++++ V + G + + G Sbjct: 235 ALLMQQHLMRRRMDELSRMRLLGNLAHEVLF-IHREGRVVEINQAGLRLFGAPASEIIGR 293 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L D L + EF VR A + + R + G Sbjct: 294 P--LLDLFAEADAPVL---LRRSRCHPEDLFPEEFEVRTAAGIAVPVELTCRAI-EYLGR 347 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + + + ++ +++ I A D LT +PNR +RL L+ +A + + Sbjct: 348 PATAVALRD-LSRRRRDEARIRHLALHDALTDLPNRTLLEERLGLALETAAEN-GTSVAL 405 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 +D+D++K +ND G A GD +LV +R+ L+ D LAR+ G+ F I+L + Sbjct: 406 AYLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRSLA 465 Query: 629 KIADFAIAMRKSIAMPINLLER--------EITVTASIGFASWTSSKITSSEMLKNAELA 680 ++A+ A + ++ P + + + + AS+G A + S T+ + + A+ A Sbjct: 466 QVAETAERLVAALGRPFQIEGQIGGSVEGLRVEIGASVGIALYPSDGSTAESLKRAADTA 525 Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y K G V F + R I+ +L A+ EL L Y PI+ EI Sbjct: 526 LYRVKDEGRGAVRFFEAAMDEQLQARRRIEHELSGAIARGELALDYQPIVNGRTGEIEIF 585 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + ++F+ +AE+ I I ++L+ +W P + + Sbjct: 586 EALIRWHHPELGCVFPADFIPLAEQTDQIGRIGAWVLDTACAAAAAWP-----HPWRVSV 640 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ K G+ A++ + SP R+ L +ESV + + + +L LR +G+ L Sbjct: 641 NVSPKQFRQPGFAAGVAAVLGRHGLSPGRLVLEITESVFIHDAATALTVLTALRTLGVRL 700 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 LDDFGT S LSYL FD +K + S + G + I+R+I + N+ T+ + Sbjct: 701 ALDDFGTGYSSLSYLQRFQFDKIKVDRSFVRGLGQHADALTIVRAITHLGHNLGLTVTVE 760 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + + L +GCD +Q A P ++ + Sbjct: 761 GVETQEQLTVLRELGCDQMQGYLFARPAPMTNLSE 795 >gi|77456688|ref|YP_346193.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas fluorescens Pf0-1] gi|77380691|gb|ABA72204.1| conserved GGDEF/EAL domain protein [Pseudomonas fluorescens Pf0-1] Length = 898 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 149/568 (26%), Positives = 273/568 (48%), Gaps = 17/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + + P I + +HG + LP + Sbjct: 336 RRTATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYTTEEVHGQRLSELPAL 395 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L + Q EF+ R + + +W + I + N ++ YIG Sbjct: 396 -----ENLSELLFDAPSALAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 450 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID Sbjct: 451 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDTPISLLLVDID 507 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L LAR + N F ++L + + A Sbjct: 508 NFKRINDSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEFAVLL-DDTDLATGQQIA 566 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P+ + + I+VT S+G A +++NA LA++ AK G + V+ Sbjct: 567 NQLLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQV 626 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++G+EAL++W+HP+ G I Sbjct: 627 FTEALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPERGMI 686 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I ++ + R + A M + + IN++ K D +L Sbjct: 687 RPDQFISVAEETGLIIPIGKWIARQACR-MSKALTAAGMGNLQVAINLSPKQFSDPDLVA 745 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ + + ++L +E +++ E + L L +L+++G++L +DDFGT S LSY Sbjct: 746 SIANILKEEALPANLLELELTEGLLLEATEDTHLQLDQLKRLGLTLAMDDFGTGYSSLSY 805 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + S + + + I ++I MA N++ ++A+ I + L R Sbjct: 806 LKKFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETAEQLAFLRRH 865 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958 CD Q P+ +++ LK R+P Sbjct: 866 RCDVGQGYLFDRPIPGGELIQALK-RYP 892 >gi|288818239|ref|YP_003432587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Hydrogenobacter thermophilus TK-6] gi|288787639|dbj|BAI69386.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Hydrogenobacter thermophilus TK-6] gi|308751837|gb|ADO45320.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Hydrogenobacter thermophilus TK-6] Length = 867 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 118/560 (21%), Positives = 250/560 (44%), Gaps = 23/560 (4%) Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHI 458 + E +A S + V D + + P + I G + G R + +H Sbjct: 324 LLKSMEMMYMATEQSFEWVMITDKSGNIMYVNPAVERISGYTKEELLGKNPRIFKSGLHS 383 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 R+ ++ + D+ + + F R D ++ I P+ + G+I ++ D Sbjct: 384 --REFYKNLWDTILSGE--SFRAVFINRRKDKSLFYLDAIISPLRDETGNITAFVSTGRD 439 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT+ ++ E + D LT +P R FL +L + + V+++D+ Sbjct: 440 ITQVRQMEESLYRLVNYDALTDLPTRVYFLRQLEETI---KEKSHSNIAVLLMDMHNLGG 496 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IN V G GD VL + + + L AR + F + ++ I + ++ Sbjct: 497 INAVYGYEFGDKVLRAFAQNLKILP---AFCARYGDDEFV-LFKEMKSAEDIYELLKSVF 552 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFR 696 + +++ + IG + + + + E+++NAE+A+ AK G + Sbjct: 553 NACN--LSIEGESYKLGIHIGVSFYPTDGQRAQELVRNAEIALKKAKVSVPGSYEFYNPE 610 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 V ++++L LA+E E + + P+ R D ++VG E L++W+ G + + + Sbjct: 611 EGKKVFQWVKMEQELRLALERGEFLIYFQPVYRTSDLKVVGAEELLRWNSRSLGLVQAKD 670 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ + E+ +I ++ ++ ++ + I + + I IN++ L +L E + Sbjct: 671 FVPVLEKTGLILDVSDYVFKKCIQFIKEYH-----IKVPISINLSPAQLRQKDLAEKLCH 725 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ + SP + + +E +++ + E + + L+ G +TLDDFG + S LSYL + Sbjct: 726 VVKASGISPELLNVEITEEMLIEDLEGASRKISELKTCGFLITLDDFGVRYSSLSYLANL 785 Query: 877 PFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + + + + +II MAK+++ +A+ + + ++ L +GCDY Sbjct: 786 PVDYIKIDMSFIKLIDQDEKTLKVVLAIINMAKSLKIKTVAEGVERKSQLEILKDLGCDY 845 Query: 935 IQDSHVASPLGFNSILKLLK 954 +Q +++ PL + +L Sbjct: 846 VQGFYLSKPLPVEEFISILS 865 >gi|226309056|ref|YP_002769016.1| hypothetical protein RER_55690 [Rhodococcus erythropolis PR4] gi|226188173|dbj|BAH36277.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length = 775 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 154/758 (20%), Positives = 317/758 (41%), Gaps = 36/758 (4%) Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273 R + + L Y++ L+ V R + L + +++ Sbjct: 23 RRQIDEAAAVAPFANLAYMASLVVILTYTVP---PGRQTLRWLGGALIFLVLANSIRVWI 79 Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 RW + + + + ++ + A + L + G Sbjct: 80 PL-RWRQSKHTPRYDYVGLLVEVIVVATLDVALFALLFHDMDVFRDLVLIATMAGIMGAG 138 Query: 334 ---YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390 + + WI I + + + ++ A+ + + + +G + Sbjct: 139 TVTFSSLRSVSLTWIYIHGLGVFTVLIVHAEPHFRVL--AIQLCIYMFALTVGAVYLSAS 196 Query: 391 LATGYFSQGIFSDGERQSLAV------LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 ++ ++ ERQ++A+ GS D +W+ D T+ +A + G+ Sbjct: 197 FQRRCLAE-FQAESERQTVALLLDGFEGGSRDWLWECDTNGRFSHTSARLAEVAGMTVDE 255 Query: 445 MHG-PIRNWLPYI----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + L + R ++D + D + W + Sbjct: 256 LQQLTFGQLLTRLQIASSPEGRAAAAQMIDKL--ESSAPFRDTVVPVHVDGRRRWWSLSG 313 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 P +G IL + G+ +DITE+ + IL A D+LTG+PNR++F L ++ A Sbjct: 314 NPRVLESGVILGWRGVGSDITERYVHEQEILRLAATDSLTGLPNRRAFGVALEEAINSRA 373 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 D + ++ D+D +K +ND LG +GD +L+ +T+R+ +++ D+ +R+ G+ FG Sbjct: 374 PDKQVLVGIL--DLDNFKSVNDTLGHPIGDQLLLEVTKRLRKVV-GSDMCSRMGGDEFG- 429 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +++ ++ + + P + I V A+IG++S + ++ A+L Sbjct: 430 LIVCTSSRDDPGVIFDRYLEVLHEPFFVEGNRIEVRATIGYSSAPEDSTDADGLVMLADL 489 Query: 680 AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 A+Y AK G N V F + + S R +L +E + L Y P + E+V Sbjct: 490 ALYEAKSTGRNRVGKFSPLLRARASARATALHELDRGIEEGQFDLHYQPQVDTQTGEVVA 549 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W+HP G I S+F+ +AEE MI + + W I + Sbjct: 550 FEALLRWNHPSRGLIGPSQFISVAEETGMIIPLGAQAMAMATAAAAGWP-----IGIGVS 604 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++ L+ E ++ ++ + +P ++L +E+ V+ + R+ L +LR++G++ Sbjct: 605 VNVSPVQLVSREFGAMVKKALTDSGLAPHLLQLEITETGVVDD--RAIRDLYKLRELGVT 662 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917 + LDDFGT S + L +P D +K + L+T S + ++++++SI+ +A + +A+ Sbjct: 663 VALDDFGTGYSSFATLQRLPIDVLKIDRMLVTDSDDPKMSVVKSIVELAAALGMKSLAEG 722 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + +GCD +Q H++ L + L Sbjct: 723 VETIEQFRRVQWVGCDLVQGYHISKALTAERVDVYLAA 760 >gi|315500253|ref|YP_004089056.1| diguanylate cyclase/phosphodiesterase with pas/pac and mhyt sensor(s) [Asticcacaulis excentricus CB 48] gi|315418265|gb|ADU14905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Asticcacaulis excentricus CB 48] Length = 929 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 158/785 (20%), Positives = 308/785 (39%), Gaps = 60/785 (7%) Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF-GFLSKLVNLPSGELLIWRAC 256 V + ++ A A +VLG ++ F G + V Sbjct: 151 VLLGMVFEAAALWLATSRFRYALGGATALMVLGIVAHHFIGMGAVDVTPDPRIATGGLML 210 Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC-----IAILFCMSFYYPMVTASIA 311 + ++S ++ + + + + +A ++ + Y + Sbjct: 211 NPGSMSITVAVVAIAVMGLCIMSLRQRQRFEAAVAANERHMRILIDSVRDYAIYMLDPQG 270 Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPA-------WILIFIWFIGLWMAITK---- 360 R++ + + G A A ++ Sbjct: 271 RVSNWNAGAQRFKGYDASEIVGQSFATFFPEADREAGRPQAILQAALAQGRYEEEGERVR 330 Query: 361 -----RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 L + I+ P LI I A + + A+ Sbjct: 331 KDGSTFLAHVILTPMYESDGTLIGFAKVTRDITQRRADREILKRTTHN---FDTALRHMS 387 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASG---------SMHGPIRNWLPYIHINDRDNFRT 466 + +D V P + ++ G + G I +R Sbjct: 388 QGLSLYDADHRLVFANPRVLSMFGNDPDMARPGTPFREVLGNILRRAGATEAQIEARYRL 447 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 +D G L E +A+ + + RP+ ++ +DIT +++ Sbjct: 448 HMDLIAQPEGGTLISE----SANGTV--LSVTYRPLPEG-----GWVTTIDDITARRRDE 496 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + I A D LTG+PNR+ F L+ +A + V ID+D++K+INDV G A Sbjct: 497 DRIAHMARHDGLTGLPNREHFNQHTDRELERAARTGHKVAAVA-IDLDRFKEINDVRGHA 555 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL + R+ L + +AR+ G+ F + S + +++DF + ++ PI+ Sbjct: 556 AGDQVLKIIAERLQRLCGDTEFVARIGGDEFACVKTS-AEARELSDFVSRLDAALHDPID 614 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN------HVESFRVSSF 700 L E++ S+G A + ++ NA+LA+Y AK + R+ Sbjct: 615 LDGFEVSPGGSMGVAVYPDDADGREPLMNNADLALYRAKAQPRINGHEAVCYYEARMDEA 674 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 DR + +DL A+ EL + Y + + I G EAL++W HP+ G +S ++F+ + Sbjct: 675 ARDRRALAKDLWQAIARDELRVHYQVQRSVTSQAITGYEALLRWQHPQRGFVSPADFIPV 734 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE I I ++L + +W + + +N++ L +L +Q+++ + Sbjct: 735 AEECGAILEIGEWVLRTACAEAATWTN-----GAKVAVNLSPVQLTHPDLVGMVQSILIE 789 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T SP R++L +ES ++G+ R+ +L +++ G+++ +DDFGT S L L PFD Sbjct: 790 TGLSPRRLELEITESTIIGDKARALHILRQIKGFGVTIAIDDFGTGYSSLDTLNAFPFDK 849 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + + + + AI+R+I+ + +++E ++A+ + ++ L GCD Q Sbjct: 850 IKIDRSFLMEAEQSPQARAIIRAILALGRSLEVPVLAEGVETVAQLELLRSEGCDEAQGY 909 Query: 939 HVASP 943 + P Sbjct: 910 YFGRP 914 Score = 80.4 bits (197), Expect = 2e-12, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 95/325 (29%), Gaps = 20/325 (6%) Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE-IALSSSLIIFLFMYLHWNR 277 + +A + + L+ + +G L S IA++ + Sbjct: 50 VAMAGLAAGFGIWATHFIAMLAYSAGVATGYDLFKTFLSLLIAVTLTGSGIALAITETKA 109 Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337 + VG MS +A+ VL F R Sbjct: 110 FWRGVGGALLGVGVAGMHYTGMSAVIAPAHIGWHTELVAASVLLGMVFEAAALWLATSRF 169 Query: 338 VLLIP-AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV---------- 386 + A L+ + + +D GGL+L + TV Sbjct: 170 RYALGGATALMVLGIVAHHFIGMGAVDVTPDPRIATGGLMLNPGSMSITVAVVAIAVMGL 229 Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGS 444 I + F + ++ + + D ++ D G + Sbjct: 230 CIMSLRQRQRFEAAVAANERHMRILIDSVRDYAIYMLDPQGRVSNWNAGAQRFKGYDASE 289 Query: 445 MHGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G ++ + DR+ R IL + + GR + E D + + PM Sbjct: 290 IVGQ--SFATFFPEADREAGRPQAILQAALAQ--GRYEEEGERVRKDGSTFLAHVILTPM 345 Query: 503 SNSNGDILRYIGIANDITEQKKSLE 527 S+G ++ + + DIT+++ E Sbjct: 346 YESDGTLIGFAKVTRDITQRRADRE 370 >gi|206974322|ref|ZP_03235239.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] gi|206747562|gb|EDZ58952.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97] Length = 689 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 121/549 (22%), Positives = 245/549 (44%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQILNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ + + K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPGIHLFREHDDQFVMLIENIT-KERVEGVSKNILKRISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMDGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|119715376|ref|YP_922341.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nocardioides sp. JS614] gi|119536037|gb|ABL80654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nocardioides sp. JS614] Length = 827 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 134/616 (21%), Positives = 260/616 (42%), Gaps = 17/616 (2%) Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400 + A ++ +G + L+ + ++ V + Sbjct: 206 VLAEVVGAGGSVGTTTRLRDHRGTWHWMELTATNLLDTSVGGVVCNLRDVTDRVRAEAAL 265 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + R + + +W + ILGL + + G L + ++ Sbjct: 266 RASERRYRAIADNADEGLWVTAPDGRSAYVNQRLVEILGLEAEEILGRP--VLEVLDPHE 323 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + +L + R + +R D +++ P+ ++ G + + + D+T Sbjct: 324 QP-MTRVLAAGTDDGTQRHEVTYR--HPDGGRRSLVVSTSPLDDAGGAVEGSLAMVADVT 380 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + ++ + A D LTG+PNR DRL L ++ID+D+++ +N Sbjct: 381 DARRLERELRDAALHDGLTGLPNRALLRDRLEHALARETRST----AALLIDLDRFRVVN 436 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 + G A GD +L R+ ++ D +AR G++F +I + + + Sbjct: 437 ESRGHAAGDTLLADTAHRLAAAVRPTDTVARFGGDQFLVICEDV-DEQEARAIGEDALGA 495 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P ++T+TAS G A ++ +++ AE A+ AK GG V+++ + Sbjct: 496 LRPPFPAGGGDVTLTASAGLALTP--APSAGALVRRAETALRAAKAAGGARVQAYDAEAA 553 Query: 701 RSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + +L ++ EL L Y P+I L E+VG+EAL +W HP G + S F+ Sbjct: 554 AVSEQRFELGVELARSLAADELALHYQPVIGLASGEVVGVEALCRWQHPLLGQVPPSTFI 613 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQAL 817 IAE + ++ +++ER R+ R +PP ++ +N++++ L D L E + Sbjct: 614 EIAEAEGLAATLDRWVVERALREAAELRASGALPPTAYVAVNVSARSLADPGLAEHVLRA 673 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +P + L +ES M +P + LLGRLR+ G + +DDFGT S L+YL +P Sbjct: 674 AQTAGTAPQDVLLEVTESATMTDPAAAADLLGRLRRHGFRVAVDDFGTGHSSLAYLRRLP 733 Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S + + E AI SI+ +A+ + +++A+ + L R+G D Sbjct: 734 VSVLKVDRSFVAEVATDEHARAITGSIVDLARTMGLSVVAEGVETPAHAAVLRRLGADAG 793 Query: 936 QDSHVASPLGFNSILK 951 Q + + + Sbjct: 794 QGWLWSPAVSPEEATR 809 Score = 74.6 bits (182), Expect = 8e-11, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 399 GIFSDGERQS-------LAVLG-SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 + ER+ LA+ + D+ D + +P + +LG A + Sbjct: 132 SLLQSVERRRRQQEDFFLALAQRASDLAVVLDPDATVLFASPAMTGVLGHAIEDVLANDA 191 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + Y+H +D + R +L V G + R+R +HWM + + ++ + Sbjct: 192 --MDYVHPDDVERARAVLAEVV-GAGGSVGTTTRLRDHRGTWHWMELTATNLLDT--SVG 246 Query: 511 RYIGIANDITEQKKSLE 527 + D+T++ ++ Sbjct: 247 GVVCNLRDVTDRVRAEA 263 Score = 60.3 bits (145), Expect = 2e-06, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 7/119 (5%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D V P A +L GS+ G L H +D+ L + Q Sbjct: 35 CDENAVLVAVNPAFARMLDGPPGSLTGRPIRDLA--HRSDQGAADRALGRLLRSETDATQ 92 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-----EQKKSLEGILCNAF 534 E +R +D + + + N + + + D++ E+++ + A Sbjct: 93 AERILRRSDGRPVPTLASATAVRNGSPRPSGALVVYQDLSLLQSVERRRRQQEDFFLAL 151 >gi|39937227|ref|NP_949503.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|39651085|emb|CAE29608.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains [Rhodopseudomonas palustris CGA009] Length = 912 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 259/568 (45%), Gaps = 33/568 (5%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 +L V + D + + GL +G + Sbjct: 362 ALTVQNTADGRYMLANRGAEIILNRRREDATGLTTGEIFNAKE-----------ARLIAE 410 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 D + G + E + A + R +++ I D+T+++++ Sbjct: 411 RDELAIRKGGLVVEEHPISTA-GGLRLFVTRRMTVTDEADQAHYLIKTHVDVTDRRQTEA 469 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A+ D LT +PNR +FL LT +++ + + V+ +D+D K+INDV G A+ Sbjct: 470 RMAHMAYHDGLTDLPNRDAFLKSLTQMIE-ACDNAVDEFAVLSVDLDGLKEINDVFGHAI 528 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L+ + RRI E ++ARLSG+ FG+I+ D A + K++A + Sbjct: 529 GDKLLIEVARRI-EWASRGGVVARLSGDEFGLIIDGPQ-PAAARDLASMVAKALAPGFVI 586 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705 + + + + G A + ++ ++ +L NA A++ AK RG V + DR Sbjct: 587 DGKTVRIGVTTGVALFPANGTDAASLLANAGAALFRAKAKARGSVTVFEPEMDMQIRDRR 646 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLM----DEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++ +DL A+ N E+ L Y P + +IVG EAL +W HP G + SEF+ +A Sbjct: 647 VLHQDLSNAIRNGEMSLYYQPQASSTKRVGNNDIVGFEALTRWRHPTRGFVPPSEFIPLA 706 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I + ++L R SW P+ + +N++ L+ +L + ++ +T Sbjct: 707 EESGLIVELGEWILREACRQAASWAR-----PLQVAVNLSPAQFLNTDLVAFVHEVLLQT 761 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P R++L +E V++ + +R LL RL+ +G+ +++DDFG+ S L+YL PFD + Sbjct: 762 GLEPGRLELEITEGVLIEDFDRGLSLLRRLKALGVRVSMDDFGSGYSSLTYLQAFPFDKI 821 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + + AI+R++I + + T++A+ + + + L CD +Q Sbjct: 822 KIDRAFIMNLGRNPQSAAIVRAVIGLGHGLGVTLVAEGVETQDQLDFLVDESCDAVQGYL 881 Query: 940 VASPLGFNSILKL-----LKERFPLVKN 962 + P + L L++R P Sbjct: 882 IGKPAPIDQYRWLVGLDALEDRAPARAR 909 Score = 41.1 bits (95), Expect = 0.91, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 39/136 (28%), Gaps = 6/136 (4%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIR 450 S+ + + + + V I + T+ GL+ + G Sbjct: 210 ELRRMSKELSTTKQFLESVIDNIPVCVAAKSIEDGRYILANRAFETLSGLSRDKIIGATA 269 Query: 451 NWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 ++ + R S + G Q E V R+ N +G+ Sbjct: 270 ---DQLYPARSAASIREADQSALQSITGAFQSELTVELGRGDRILASNRVVA-RNEHGEP 325 Query: 510 LRYIGIANDITEQKKS 525 I + DIT ++ Sbjct: 326 EFLIALFEDITNRRAL 341 >gi|172035684|ref|YP_001802185.1| hypothetical protein cce_0768 [Cyanothece sp. ATCC 51142] gi|171697138|gb|ACB50119.1| hypothetical protein cce_0768 [Cyanothece sp. ATCC 51142] Length = 700 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 120/427 (28%), Positives = 225/427 (52%), Gaps = 5/427 (1%) Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 +++ + + F DNLTG+ NR L + + + + V+ +D D++K IND Sbjct: 243 QENNAKLQHDLFHDNLTGLANRVYILQEIEAEIKEKKANQDHCFAVLFLDCDRFKVINDS 302 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 LG VGD+VL+++ +R+ ++ DI ARL G+ F I++ + ++ ++ A + K ++ Sbjct: 303 LGHDVGDEVLINIAQRLNLCIRKHDIAARLGGDEFVILIKNLSDIKQVTQIADRILKQMS 362 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700 P+ L +++ +T SIG + + ++L++A++ MYHAK +G F + + Sbjct: 363 EPLILENQQLVITMSIGVVVSQENYENADDLLRDADITMYHAKQQGKAQYAIFKPIMHTQ 422 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +R+ ++ L A+E E YL Y PII +++G EAL++W HP G IS + F+ I Sbjct: 423 ALERLEVESSLRKALEKQEFYLYYQPIISFKTSQLIGFEALLRWHHPTQGWISPATFIPI 482 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALIS 819 AEE +I ++ ++L+ I W+ P+ + +NI+S L + E ++ ++ Sbjct: 483 AEETGLIVSLGQWVLQEACHQISIWQSHFPFSEPLKVSVNISSFQLNQMDFVEQVKKVLE 542 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 ++ S++ L +E+V+M N E + L L+K+G+ +++DDFGT S L+YL +P D Sbjct: 543 ESKIKASQLNLEITETVIMNNIESTSFKLQCLQKLGVKISIDDFGTGYSSLNYLQQLPID 602 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + I+ +II + + +A+ I + +G DY Q Sbjct: 603 ILKIDRSFVRRLESNPSEFQIIEAIIKLGNILGMETLAEGIETSEQYNLIQSLGVDYAQG 662 Query: 938 SHVASPL 944 + PL Sbjct: 663 FIFSKPL 669 >gi|219668322|ref|YP_002458757.1| diguanylate cyclase/phosphodiesterase [Desulfitobacterium hafniense DCB-2] gi|219538582|gb|ACL20321.1| diguanylate cyclase/phosphodiesterase [Desulfitobacterium hafniense DCB-2] Length = 975 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 139/556 (25%), Positives = 269/556 (48%), Gaps = 13/556 (2%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 ++ A+ + +VW+ ++ + + + L + Y++ Sbjct: 426 QKYEHAINSTNSVVWELNLSNRSIYFSRNFENWLSRPFPWHEPVDQLMDKYLNEKIVQLL 485 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + +++ + ++ EF V+++ W+ + + + S+ + + GI D+T+QK Sbjct: 486 NEEIAAYLNGEKSEIKVEFPVKSSAKPSRWIKAQGKAIRGSSEEEIFLYGIMTDVTDQKL 545 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 E I A D LT +PNR SF+++L ++ + L ++++DID +K+IND LG Sbjct: 546 QEEYIDHLAHYDYLTNLPNRISFMEKLQEEIEKA-----LPLYILLMDIDNFKEINDTLG 600 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD VL ++ +++ + ++R G+ F +IL+++ +S I + +R + P Sbjct: 601 HVWGDKVLKAVAQKLLDHACPNMFISRFGGDEF-LILMTDRDSCDIEECIKQIRIMFSQP 659 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--S 702 I++ E T+ S+G + +++ NA+ A+Y K G NH + + Sbjct: 660 ISIERNEFTLKFSMGITRYPEDSTDIDQLIMNADTALYQVKRSGKNHHLLYNKEMQQELR 719 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ + + + AV+ YLVY P + + EI EAL++ H IS F+ IAE Sbjct: 720 NKAVTEGIIRKAVQEDGFYLVYQPQVNVKTGEIESFEALVRLKHH---PISPDVFIRIAE 776 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I I + + R +WRD+ P I IN +SK + D + + + +++ Sbjct: 777 ESDLIYQIGRVVTKEAIRQAAAWRDK-GYPRKSISINFSSKQIRDRDYLQFLVDTLAEYE 835 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P +++ +ES+++ + LL +++++GI + LDDFGT S L+YL YIP D VK Sbjct: 836 MDPQCLEIEITESILLEETHLTLELLEKIKELGIKIALDDFGTGFSSLNYLTYIPVDKVK 895 Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + SL + I ++ SII +A ++ I A+ I + ++L GC+ IQ + Sbjct: 896 LDKSLCDKFLSPDNIKVIESIISLAHSLNLVITAEGIEEQWQYEQLKLSGCNSIQGYLFS 955 Query: 942 SPLGFNSILKLLKERF 957 PL K+ ++ F Sbjct: 956 KPLVAEEAEKIYEKNF 971 >gi|220936132|ref|YP_002515031.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. HL-EbGR7] gi|219997442|gb|ACL74044.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. HL-EbGR7] Length = 761 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 129/447 (28%), Positives = 230/447 (51%), Gaps = 6/447 (1%) Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +A ++ E++++ E + A+ D+LT +PNR F DRL ++ + + L ++ ID+ Sbjct: 311 ALAQEVREREQAQERLNELAYSDSLTHLPNRTLFQDRLHQAMEYAKRHERL-IALLFIDL 369 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K++ND LG A GD +L + RR G +L+ D LARL G+ F +IL F Sbjct: 370 DDFKRVNDSLGHAAGDRLLQEIARRFGRVLRETDTLARLGGDEFTVILTDIQRPEDAVTF 429 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + ++ P L E+ IT++ASIG + S +++LK+A+ AMY AK RG N + Sbjct: 430 VRKLLDTLRAPFMLGEQSITMSASIGITLYPSDDTAEADLLKDADTAMYQAKSRGKNTFD 489 Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + R+ ++ DL A++ ++ L Y PI+ L + GLEAL++W HP G Sbjct: 490 FYAPELTQSVRARLTMEGDLRAALDTNQFLLHYQPIVSLNGAGVQGLEALVRWQHPVRGL 549 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + EF+ +AE+ +I I ++++ + W D + + + IN++ + L Sbjct: 550 VPPDEFIPVAEDSGLIHEIGDWVIDAACAQLAQW-DARGLSHLTLAINLSPVQFRRDGLV 608 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + + + R+ L +ES++M L L +GI L +DDFGT S L+ Sbjct: 609 SRIARRLRQHSIASERLHLEITESLLMEQNRHVAETLQTLDAMGIGLCIDDFGTGYSALN 668 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL + P +K + S + E A++R+I+ MA + ++A+ + + ++ L Sbjct: 669 YLRHFPIRQLKVDRSFVEDMLHAEDTRALVRAIVLMAHALRLEVVAEGVEEKSQLELLRE 728 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 MGCD +Q ++ PL I ++ + Sbjct: 729 MGCDQVQGYLLSRPLPAAEIPGWIESQ 755 >gi|332139599|ref|YP_004425337.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Alteromonas macleodii str. 'Deep ecotype'] gi|327549621|gb|AEA96339.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Alteromonas macleodii str. 'Deep ecotype'] Length = 945 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 167/962 (17%), Positives = 329/962 (34%), Gaps = 54/962 (5%) Query: 17 ILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIE 76 L++ + FA P+ I+ S + + F ++ Sbjct: 12 ALLISWVMFSFHVFASSPLVINESFERDIINHFAQRLEAPSST-TYFDILSGSAVAPSPG 70 Query: 77 VSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI---ISVTPS 133 + ++ W +L +T S + ++ + + + D R I Sbjct: 71 PN----TNKRVWYSTSLQHTGYSPIPLVLNIDRLNIDDLQIYLLDDSQRIIKSYRYQAGK 126 Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNL--PQIYLWEPNFYKDTVNSFTLY 191 +SL + + F T+ P ++ + L I LWE + + Sbjct: 127 GDYSLRQPLPNIRLAF--TLQPYQDARLLIAVKDDGLKYFPIALWERDRLHQHDTNMLTL 184 Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251 G + GV SL+A + Y+ R + F + L I++ F + G L Sbjct: 185 LGAVAGVMSLIAFYFLFSYLYQR---IPSRFWLTMTTLVIIALLF--------ITEGGLA 233 Query: 252 IWRACSEIALSSSLIIFLFMYL----HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307 +W + + + + F + L + +V ++ + I + Sbjct: 234 VWPNLTNASENFFAVCFGMLLLCVGKVTHHLFPRVPFLLRAINYAAPIAATIYCLTVDAY 293 Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVL---LIPAWILIFIWFIGLWMAITKRLDN 364 + + L V+ + + K V+ AW+ F ++ + + + L Sbjct: 294 TTTISLLLLIAVMGLYHVALALLFKDKVSRVVSTTYALAWLSFFAFYALVTLNLFSDLIY 353 Query: 365 DI---IQPALVGGLVLIVILIGFTVIQHV--LATGYFSQGIFSDGERQSLAVLGSGDIVW 419 + + L L + + + S+ S + + Sbjct: 354 TVDVAMGMLLFITLGFLCLGFSVITKEQAKNQDQLSTQAETISNLNHFYDLFRNSAEGHY 413 Query: 420 DWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 + P + G + + + Y DR +L V + Sbjct: 414 TSTWDGKLKSVNPATCKVFGYENEEEMLADAASTKVFYASPEDR----QVLLGEVSQQGH 469 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 E R + D W + + + +G+ L G DITE+K+S + A D+ Sbjct: 470 VTGKEIRGKRKDGSEFWFSLSCQMRESDDGNFLY--GSIIDITEKKQSDLSLQYLATHDS 527 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LTG+ NR+ F L ++ ++ +D+D++K +ND G GD ++ + R Sbjct: 528 LTGVYNRRQFETDFREKLS---QKSDIPVCILFMDLDRFKVVNDTCGHKAGDVLIKDIAR 584 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 I L +LARL G+ FG+I + + + + A R + S Sbjct: 585 LIENTLHDEALLARLGGDEFGVIYTDVDANEVYLNAVKILNAVQAYRFMWDNRIFNLGVS 644 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCL 713 IG +++ + + L A+ A Y AK +G N V + R + D + Sbjct: 645 IGMVVCEDTEVNAGQYLSMADAACYFAKEQGRNQVHRYNKDDESMQRYQRELDWVSSINN 704 Query: 714 AVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+E L Y + + E L++ + + F+ AE M ++ Sbjct: 705 ALEEGRFELYYQSLRPLNQTTDGHYYEVLLRLREKNGNLVEPANFLPTAERFEMNVNVDK 764 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 +++ + + + IN+ L D + + +++ Sbjct: 765 WVVTNTFKWLSENPEHLAELK-RCSINLNCHSLADRDFTLFILNAFETFNIPYNKVCFEV 823 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 ESV + E + + ++G S LDDFG+ S SYL +P + VK +G + Sbjct: 824 IESVAIIKMEDTLSFMRTFNRLGCSFALDDFGSGFSSYSYLKSLPVNQVKIDGMFIKDML 883 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 A++ SI +AK + + + + E + +L +MG D+ Q VA P Sbjct: 884 NDSVDTAMVASINDVAKAMGMQTVGEFVENEGTLAQLGKMGVDFAQGYGVAKPAPLRDFK 943 Query: 951 KL 952 L Sbjct: 944 PL 945 >gi|157372974|ref|YP_001480963.1| RNase II stability modulator [Serratia proteamaculans 568] gi|157324738|gb|ABV43835.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Serratia proteamaculans 568] Length = 664 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 132/624 (21%), Positives = 270/624 (43%), Gaps = 18/624 (2%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403 + + + + + + + V L F+ Q V G+ Sbjct: 55 RLSGITASLDITITLGGEPIHLHLVGRRVNNLEWAGTASAFSDTQSV--ARDLVHGLSFA 112 Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 + V + ++ D GL + G + ++ + Sbjct: 113 EQ----VVSEANSVIVIVDQHGRIQRFNRLSEEYTGLHEHDVIGKN-VFQLFMSPEEASA 167 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 R + F + E ++ + ++ S S + + I DITE++ Sbjct: 168 SRRNIAGFFRN-GSSYEVERWIKTVKGERLFLFRNKFVHSGSGKNEVFLICSGTDITEER 226 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ E + A D +TG+PNR + D++T + T D ++ +D+D +KK+ND Sbjct: 227 RAQERLRVLANTDIITGLPNRNAIQDKITQSIA---TRDGHSVGLVYLDLDNFKKVNDAY 283 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +LV ++ + L LARL G+ F ++L + + + A + + Sbjct: 284 GHMFGDRLLVEVSLAVLGCLDNDQTLARLGGDEF-LVLAQQADREMLQRLAQRIIDRLKT 342 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701 P + E+ SIG A ++++A+ AMY AK G F ++ Sbjct: 343 PFRIGLIEVYTGCSIGIALCPEHGNDLDSLIRSADTAMYVAKEHGKRTYTVFSPEMNKRV 402 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++ + + +L +E ++L + Y P I + + +EAL++WD P+ G I +F+ A Sbjct: 403 AEYMWLDTNLRKGLEQNQLVVYYQPKIEALSGRVCSVEALVRWDSPERGLIPPLQFISYA 462 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I + ++L+ A+ W+ Q + + +N++++ L+D+ + E + ++ Sbjct: 463 EESGLIGPLGRWVLQTAAKQAAQWQRQGLQ--LRVAVNLSARQLVDDSIVEDLAQVLQHN 520 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 +P + +ES ++ + +R+R ++ RLR++G + LDDFGT S L+ L IP D + Sbjct: 521 QLTPCLLDFELTESSLIEDEKRAREVITRLRELGAQVHLDDFGTGYSSLAQLARIPLDAI 580 Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + G + +++R+I+ A+ ++ +IA+ + E + + L +G D Q Sbjct: 581 KLDKSFVRGVNDNPVSQSLVRAIVAAAEALKFRVIAEGVETESENRFLDEIGVDEKQGFL 640 Query: 940 VASPLGFNSILKLLKERFPLVKNT 963 A P+ + L+ P + Sbjct: 641 FARPMLPEQLEHWLQSYRPPSSSA 664 >gi|220933358|ref|YP_002512257.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] gi|219994668|gb|ACL71270.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. HL-EbGR7] Length = 808 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 112/563 (19%), Positives = 217/563 (38%), Gaps = 14/563 (2%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 Q + + +R + D V D+ P + G G + Sbjct: 241 AEQALSGERDRLFTTLESIADGVITADVAGRVAYMNPVAEQLTGFTLNQARGRPMEEILR 300 Query: 456 IHINDRD---NFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + D + ++ E R+R D + + + + P+ + I Sbjct: 301 V--EDLESGELLPDPVERCFNGGSPVVFSEESRLRRPDGESYAVRLTASPLRDGEDGISG 358 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + +D + + A D LTG+ NR+ F DR+ L+ + + I Sbjct: 359 AVLVLHDFSMLWDMARQLSHQARHDALTGLINRREFEDRVREALESARRSSRSH-ALCYI 417 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND G GD++L L + ++ D LARL G+ FG++L + ++ Sbjct: 418 DLDQFKVVNDTCGHVAGDELLRQLAAALPRHIRDTDTLARLGGDEFGLLLENCPLDRALS 477 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 + + + R V SIG + + + SE+L A+ A Y AK +G N Sbjct: 478 ICHQLLAEVAELRFMWQGRRFDVGMSIGLVAIDGASASLSEVLSEADSACYVAKEQGRNR 537 Query: 692 VESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 V R R + + A+E L PI + E + E L++ Sbjct: 538 VYVSRPGDQALKTRFGEMEWLGRIREAMEEERFELYCQPIRPISGEGVPHFEILLRLKAE 597 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + F+ AE ++ ++ ++ + + I + IN++ + L Sbjct: 598 DGSLVEPGAFIPAAERYNLMPQVDRHVIRSVFAMLADSDFALKQHAI-VGINLSGQSLGQ 656 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 +L + + + R +E+ + N + + LR +G + LDDFG+ Sbjct: 657 EDLLDFVTEALHYYGLPAHRFCFEITETAAIANLSSAAGFIRELRDMGCAFALDDFGSGL 716 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S +YL ++P D +K +GS + + A++ +I + + + IA+ + E ++ Sbjct: 717 SSFNYLKHMPVDYLKIDGSFVQDVLTDPVDAAMVGAIHRIGRVLGVKTIAEFVESEAVLE 776 Query: 926 ELTRMGCDYIQDSHVASPLGFNS 948 L +G DY Q + P F Sbjct: 777 HLREIGVDYAQGYGIGRPKPFRD 799 Score = 53.0 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 21/137 (15%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND----- 460 R L + D + D V LG + + G +H+ D Sbjct: 9 RFRLIFEQALDPMVLIDRHGGIVEANRSACASLGYSHEELVG-------GLHVTDFDLNA 61 Query: 461 -RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 R++ + + + Q +R D + I + G+ + DI Sbjct: 62 TREDVGRVHGNPERHLPASFQSTYR--RKDGSTFPAEVHINAVR--VGEQAQVFATFLDI 117 Query: 520 TEQ----KKSLEGILCN 532 +E+ + E Sbjct: 118 SERLAAERTLREREHQL 134 Score = 43.0 bits (100), Expect = 0.26, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 11/144 (7%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 F + + + + A+ + +++ D + + + LGL G Sbjct: 111 FATFLDISERLAAERTLREREHQLRTAITSAPMVLFSLDRHGNFMLSEGKGLEGLGLVPG 170 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + + + R L +Q E RV + +P+ Sbjct: 171 QAVGMNALEMYGAYPEVAEGLRRAL------SGEPVQLESRVEG-----RCFLHHWQPVP 219 Query: 504 NSNGDILRYIGIANDITEQKKSLE 527 + +G++ DIT Q + + Sbjct: 220 DEAAGGWGVLGVSYDITAQCLAEQ 243 >gi|302878852|ref|YP_003847416.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] gi|302581641|gb|ADL55652.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gallionella capsiferriformans ES-2] Length = 832 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 136/566 (24%), Positives = 256/566 (45%), Gaps = 22/566 (3%) Query: 404 GERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN 459 R LA +G+ + D+ + P I G + + G R + +H Sbjct: 269 EARLELASRVFETTGEAIVVTDVSGAIIAVNPAFCRITGYSEAEVVGKNPRMYKSGLHKQ 328 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 +R + + G+ E R + + + + + +S G+ Y+ + +D+ Sbjct: 329 --AFYRDFWSELIKH--GQWCGEIWNRRKNGELYAQWESVTTIKDSKGNTSSYVAVFSDM 384 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 +E KK+ + +++D LTG+ NR FL ++ L S DD V++ID+D++K+I Sbjct: 385 SEIKKAQAEVEELSWRDPLTGLANRALFLRQVEQALVSSKRDD-YFAAVLLIDLDRFKEI 443 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFA 634 N+ G+A+GD +L S+ R+G+ L D+LARL + F ++L + + A Sbjct: 444 NEARGLAIGDALLRSVADRLGQTLHRDDLLARLDSDEFAVLLPRLHIPREKAGREALAVA 503 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693 +R ++ I + I V ASIG A + + T+ ++L+ A++AM +AK G + Sbjct: 504 EKLRAALRCAIEMDGEFIHVDASIGIAMLPDTPQETAIDVLRQADMAMTNAKAEGRSRTM 563 Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 F + R ++ +L LA+ +L L P + VG EAL++W HP G Sbjct: 564 FFESLMGETVRARFQLEAELRLAILEDQLRLYLQPQVN-SSGVQVGAEALVRWQHPTRGL 622 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 F+ +AE +I +I+ +ML + R + + I + +NI+ + + Sbjct: 623 TLPGLFIPLAESSDLIISIDRWMLSAVCRLLAELDAEG--SSIRLSVNISPRHFQQADFV 680 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 +Q + + PSR+ L +E +V+G+ + L +GI ++DDFGT S L+ Sbjct: 681 SEIQHQLEASGADPSRLVLELTEGIVIGDIGDVIAKMTLLSTLGIHFSIDDFGTGYSSLA 740 Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 Y+ +P +K + S + S A++ +I+ +AK++ ++A+ + + L Sbjct: 741 YIKRLPIHELKIDKSFIQDCTSDPNDAALVETILSIAKHLHFQVVAEGVETLGQSEFLNA 800 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955 G Q P L + Sbjct: 801 RGQIIHQGYLYGRPEPAAVWRARLSQ 826 Score = 61.9 bits (149), Expect = 6e-07, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 6/151 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW--DIVRDRVT--TTPDIATILG 439 I++ + S + + +++ + D+ + + + G Sbjct: 125 VRSIRYAIERKLLSVNLQKSHDLLHKLSDHVPGLIFQFRLDVDGHMSFPFASRAMLELYG 184 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + + ++ + H +D + +E+R+ + W Sbjct: 185 VEADAVRDDATAVFAFQHPDDTAGIAASIQESARTLT-PWHHEYRILLPEQGVCWRRGDA 243 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 RP +G IL + G DITE KK + Sbjct: 244 RPEKQVDGSIL-WHGFITDITENKKIEARLE 273 >gi|188591943|ref|YP_001796541.1| diguanylate cyclase [Cupriavidus taiwanensis LMG 19424] gi|170938317|emb|CAP63302.1| putative diguanylate cyclase (GGDEAF) and c-di-GMP phosphodiesterase (EAL domain) with Chase and PAS domains [Cupriavidus taiwanensis LMG 19424] Length = 1064 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 131/568 (23%), Positives = 250/568 (44%), Gaps = 21/568 (3%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTI- 467 + + V +D +L +S + G + ++ D + Sbjct: 484 LDHAAFCVITFDEDGLITGINAAGQRMLWYSSTELVGHMPVTGLHVAAELADHARALSAE 543 Query: 468 --------LDSFVGYRRGRL--QYEFRVRAADNQFHWMI--IRIRPMSNSNGDILRYIGI 515 L + + R L + E+ + + P+ Y I Sbjct: 544 LGAPVAPGLPALLAKPRLGLTDEREWTWVRKGGSRMPVRLAVSALPVPAQATVAAGYQAI 603 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D+TE+ + E I A D LTG+PNR +R +L + R ++++D+D Sbjct: 604 GYDLTERLRVDEYIRHLALHDPLTGLPNRAELGERAQALLLQA-RTRGERVALLLLDLDH 662 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K+IND LG VGDDVL ++ RI ++ D++AR+ G+ FG++L + + A Sbjct: 663 FKRINDSLGHPVGDDVLRTMADRIKGTVRQGDLVARMGGDEFGVVLGGLRHDSEAELIAA 722 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 ++ + + + + VT S+G A + T +E+LK+A+ A+Y AK G + F Sbjct: 723 KIQARVNEELVAGGQRLRVTPSVGMAVFPDDGDTLTELLKSADSAVYAAKQGGRARLCRF 782 Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + + I+ L A+ +E L Y PI+ I +EALI W+ + G I Sbjct: 783 ASAMAEASLARFTIEGLLGRALAGNEFRLRYQPIVDTATLTIPAVEALITWETAERGVIQ 842 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +EF+ IAE+ ++ + + L R+I + R++ + + +NI+ L + + Sbjct: 843 PAEFIPIAEQSGLVVPLGEWTLSTACREIQALREELGRE-LEVAVNISPLQLRQADFPDT 901 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + + + P + + +E +++ E + RLR++G+ L++DDFGT S L+YL Sbjct: 902 VARCLRQAGLPPQGLVIEVTEGILVDGGETTIETFRRLRELGVGLSIDDFGTGYSGLNYL 961 Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P +K + S + G A+ +II + + +IA+ + E L G Sbjct: 962 TRLPISRLKIDKSFVDGVDTPGHDQAVAAAIIALGHQLHLKVIAEGVETEAQFAFLRAQG 1021 Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPL 959 CD +Q + + ++ +L++ P+ Sbjct: 1022 CDGLQGFLFSQGVPQQALRDVLRKPLPV 1049 Score = 40.7 bits (94), Expect = 1.3, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 33/131 (25%), Gaps = 16/131 (12%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---- 453 D + S D D V + + G + + G + L Sbjct: 350 HAWEDDSAMLQACLAQSADGFVVTDAHGVVVRASERAGQLFGTNATRLAGRSLDALIPGA 409 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + D ++ E AD + + + + G ++ Sbjct: 410 TGVVPADAAAGSA------------IRRELAGLRADGDRFALRVSAARLPAAEGAASHWL 457 Query: 514 GIANDITEQKK 524 D+ +++ Sbjct: 458 WTVTDLAPERR 468 >gi|89893947|ref|YP_517434.1| hypothetical protein DSY1201 [Desulfitobacterium hafniense Y51] gi|89333395|dbj|BAE82990.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 977 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 139/556 (25%), Positives = 269/556 (48%), Gaps = 13/556 (2%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 ++ A+ + +VW+ ++ + + + L + Y++ Sbjct: 428 QKYEHAINSTNSVVWELNLSNRSIYFSRNFENWLSRPFPWHEPVDQLMDKYLNEKIVQLL 487 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + +++ + ++ EF V+++ W+ + + + S+ + + GI D+T+QK Sbjct: 488 NEEIAAYLNGEKSEIKVEFPVKSSAKPSRWIKAQGKAIRGSSEEEIFLYGIMTDVTDQKL 547 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 E I A D LT +PNR SF+++L ++ + L ++++DID +K+IND LG Sbjct: 548 QEEYIDHLAHYDYLTNLPNRISFMEKLQEEIEKA-----LPLYILLMDIDNFKEINDTLG 602 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD VL ++ +++ + ++R G+ F +IL+++ +S I + +R + P Sbjct: 603 HVWGDKVLKAVAQKLLDHACPNMFISRFGGDEF-LILMTDRDSCDIEECIKQIRIMFSQP 661 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--S 702 I++ E T+ S+G + +++ NA+ A+Y K G NH + + Sbjct: 662 ISIERNEFTLKFSMGITRYPEDSTDIDQLIMNADTALYQVKRSGKNHHLLYNKEMQQELR 721 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ + + + AV+ YLVY P + + EI EAL++ H IS F+ IAE Sbjct: 722 NKAVTEGIIRKAVQEDGFYLVYQPQVNVKTGEIESFEALVRLKHH---PISPDVFIRIAE 778 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I I + + R +WRD+ P I IN +SK + D + + + +++ Sbjct: 779 ESDLIYQIGRVVTKEAIRQAAAWRDK-GYPRKSISINFSSKQIRDRDYLQFLVDTLAEYE 837 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P +++ +ES+++ + LL +++++GI + LDDFGT S L+YL YIP D VK Sbjct: 838 MDPQCLEIEITESILLEETHLTLELLEKIKELGIKIALDDFGTGFSSLNYLTYIPVDKVK 897 Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + SL + I ++ SII +A ++ I A+ I + ++L GC+ IQ + Sbjct: 898 LDKSLCDKFLSPDNIKVIESIISLAHSLNLVITAEGIEEQWQYEQLKLSGCNSIQGYLFS 957 Query: 942 SPLGFNSILKLLKERF 957 PL K+ ++ F Sbjct: 958 KPLVAEEAEKIYEKNF 973 >gi|330808461|ref|YP_004352923.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376569|gb|AEA67919.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 582 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 134/563 (23%), Positives = 257/563 (45%), Gaps = 17/563 (3%) Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464 AV + ++ + D+ ++ G + G L H + + F Sbjct: 5 YRRAVDAA--AIFSETDLSGRITYVNDQFCSLFGYRRDELLGGNHRLLNSGQHPD--EFF 60 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQK 523 + + + + E RA D HW+ + P+ + + G I RY+ I D++E++ Sbjct: 61 GDMWRTIALGQ--VWKGEICNRAKDGTLHWVDTTLVPVIDDDTGQIERYLAIRFDVSEKR 118 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + L + D LTG+PNR D L L+ S +NL V ++D+D +K +ND Sbjct: 119 RLLHSLQWRVGHDVLTGLPNRTYLSDLLDQALEFS-RAENLPLAVCMLDLDGFKAVNDGY 177 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G A GD +LV + RR+ +++ D++ARL G+ F ++L ++ + +++M Sbjct: 178 GHASGDRLLVEVARRLRSIVRGEDVVARLGGDEFVLVLRHVRGMDELHAALSRVLIAVSM 237 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P + ++I V ASIG + + +L++A+ AMY AK G N F VS + Sbjct: 238 PYGIDGKDIKVFASIGVTLFPWDNDDAETLLRHADQAMYVAKQSGRNRFHLFDVSRDKEV 297 Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 R E + A+ +EL L + P + + +VG+EAL++W HP+ G + EF+ + Sbjct: 298 RATYQTVERVRQALAGNELRLHFQPKVNMRHGTVVGMEALLRWKHPQRGLVPPREFLPLV 357 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I I +++E++ + W+ P + INI+++ + E ++ ++ + Sbjct: 358 EETDLIVEIGEWVMEQVLTQLQQWQQAGQGWP--VSINISARHFQRADFVERLRQVLERH 415 Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P + L ESV + N L +G+ +L FGT L+ L ++ T Sbjct: 416 PAVPPRLLDLQIVESVALENLAHVSACLQACHALGVGFSLGGFGTGYCSLNDLKHLRTQT 475 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + + + +A+ ++I +A+ ++A+ + + L +GC+ Q Sbjct: 476 IKIDKTFVRDILHDRDDLALTEAVIGLARAFGREVVAEGLDSLEHGQLLLNLGCEVAQGY 535 Query: 939 HVASPLGFNSILKLLKERFPLVK 961 +A P+ I ++ P + Sbjct: 536 FIARPMPPERIPGWVQGFIPPSQ 558 >gi|88704892|ref|ZP_01102604.1| sensory box/GGDEF domain/EAL domain protein [Congregibacter litoralis KT71] gi|88700587|gb|EAQ97694.1| sensory box/GGDEF domain/EAL domain protein [Congregibacter litoralis KT71] Length = 834 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 135/558 (24%), Positives = 257/558 (46%), Gaps = 14/558 (2%) Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 R ++A + + + D + I G + G ++L + Sbjct: 265 ERRLTMAAQVFTHAREGILITDDAGKIIEVNEAFEDITGFSRDEAMGKNPSFLSS-GQHS 323 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + + D + EF R D +I I + ++N + +Y+G+ DIT Sbjct: 324 AEFYAAMWDELK--KNDYWSGEFFNRRKDGSLFVELITISAIRDANEAVQQYVGLFTDIT 381 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 K+ + + A D+LT +PNR DRL+ L S + + + ID+DK+K IN Sbjct: 382 RMKEHQKQLEHAAKFDSLTDLPNRILLGDRLSMALSQSQRRGS-KVAIAYIDLDKFKAIN 440 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG A GD LV L+R++ L+ D LAR+ G+ F ++ + + A + ++ Sbjct: 441 DRLGHAAGDLFLVQLSRQMKTALRETDTLARIGGDEFVALIGDVADKTECAVLLRRLSEA 500 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 I P+ + ++V+ASIG + + ++L++A+ AMY AK + +E F VS Sbjct: 501 IKTPVTINGEALSVSASIGVTLYPEDSCDADQLLRHADQAMYAAKQNSSHDLEFFDVSEG 560 Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + + ++ A+ E L Y P + L E++G EALI+W+HP+ G + +EF+ Sbjct: 561 YNLDLRRALLSEVRQALLRQEFRLFYQPKVHLPSGELLGAEALIRWEHPERGLLKPAEFL 620 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 E + I +++ + W + P + +N+ + L + E + + Sbjct: 621 PDVETSPLSVEIGDWVIAEALSQMNEWLETGLRVP--VSVNVGAMQLQAPDFTEKLTLAL 678 Query: 819 SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++ PS ++L E+ + + E + ++ R++G+ + LDDFGT S L YL ++P Sbjct: 679 ARHEALDPSCLELEILETRALADLEATSRIMKACRRLGVRMALDDFGTGYSSLRYLKFLP 738 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 + +K + S + G I+ +II + + + +IA+ + +EL R+GC Sbjct: 739 AEVLKIDQSFVKGMLSDRDDKTIVMAIIGLGETFDREVIAEGVETAEHARELLRLGCGRA 798 Query: 936 QDSHVASPLGFNSILKLL 953 Q +A P+ + + Sbjct: 799 QGYAIAHPIPASDFAAWV 816 Score = 76.1 bits (186), Expect = 3e-11, Method: Composition-based stats. Identities = 31/277 (11%), Positives = 78/277 (28%), Gaps = 16/277 (5%) Query: 259 IALSSSLIIFLFMYLH-WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLAS 317 S+ + + ++L + + + S A +L ++ Sbjct: 10 ALTSALYWVLVILWLAILSLYVNHLLRAQRSDKAVSVLLVILALDAFRSLIESTYFGFFF 69 Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377 LY H +++IP + + + + L + I + ++ Q A Sbjct: 70 NSLYGFLPAGIHDQLSQ-PHLVIIPKLLNVAVALVILALLIRYWIPRELKQRAQQ----- 123 Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 + + Q + + D + D + + Sbjct: 124 -TADLESARQDADIKRRRAEQESLK----RQSILNAISDGIVISDNEGRIAAVNDGMQRV 178 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMI 496 G + G L + + +LD + YE R D Sbjct: 179 FGYDIEFLRGK-ETLLLHNSEEEFPPITPLLDG--EGPTAPKRAYEACYRRGDGSLFTGE 235 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + + +G++ ++ + DI+++K + + A Sbjct: 236 TIRSLVRDPDGNVTGFVTVIRDISQRKLNERRLTMAA 272 >gi|293609673|ref|ZP_06691975.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828125|gb|EFF86488.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 950 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 127/575 (22%), Positives = 262/575 (45%), Gaps = 11/575 (1%) Query: 388 QHVLATGYFSQGIFSDG---ERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q L ++ I + E L + + + ++ D + + P + G + Sbjct: 373 QKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEHLNYIDVNPYYEKLTGFS 432 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + + F T + + G +F + + + ++ + I Sbjct: 433 KSELLNKELFSITINQKELQQQFHTSITQQLLE-TGEYMGQFDEKFSSGKSVYLWLHINV 491 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + I YIG A D+TEQK+ + + D+LT +PNR + ++L L + + Sbjct: 492 VKDEFNQITNYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRLYYYNQLHQYLVNPSYN 551 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++ ++ID+++ N+ L GD++L +R+ + ++A L+ + F II Sbjct: 552 IK-NLALIRVNIDRFRAFNEFLNNDSGDELLKQFAQRLRLININAILVAYLNSDDFAIIY 610 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + + +++ P + E +TASIG A + + +AE A+ Sbjct: 611 EISPIHPNVEQYCQNILQALNAPFYIDNHEYFITASIGVACFPEHGRQIDHLNNHAEQAL 670 Query: 682 YHAKHRGGNHVESFRVS-SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK GGN + + + ++++L A++N E + Y P I + D+ I+G EA Sbjct: 671 SEAKRLGGNTICYYCNKTNHSYKTADLEQELRKAIQNDEFVIYYQPKININDQSIIGFEA 730 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G I + F+ AE +I I +L+++ + + W++ I + +NI Sbjct: 731 LIRWQHPEKGLILPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKNA-GYINIQVSVNI 789 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + L + ++ K S ++L +ES ++ N + LL +++ IS+ L Sbjct: 790 VAQQIHRGLLLNDLDEVLQKYNIQGSDLELEITESALLDNTANVKTLLHAIKQRDISIAL 849 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DDFGT S L+YL P D +K + + ++ K+ AI+ ++I M K++ ++A+ + Sbjct: 850 DDFGTGYSSLAYLTEYPIDVLKIDRAFISKIGDHKQEAIVNAMIAMGKSMGLKLVAEGVE 909 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + + L + CD++Q + P+ I+ L+ Sbjct: 910 TKEQVTYLQKQQCDFLQGYFFSRPIPAEQIIPYLQ 944 >gi|258624694|ref|ZP_05719628.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM603] gi|258582981|gb|EEW07796.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM603] Length = 684 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 137/583 (23%), Positives = 260/583 (44%), Gaps = 36/583 (6%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSM 445 Q + + + +L D + + D ++ P A +LG Sbjct: 116 AQDTSEKQILVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGF--EDT 171 Query: 446 HGPIRNWLPYIHINDRDN--FRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMII 497 + L + I+++ F + L S + R R +E +V+ Sbjct: 172 QKLLGENLSRLFIDEKTKTVFSSQLASLLTERPLICLTGPRCGFERKVQLHAGS------ 225 Query: 498 RIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + S ++ + D E K+ +A D+LTG+ NR F RL + Sbjct: 226 --TSILGSQSQLI----LLQDADEAPKQLSATTQVDAHIDSLTGLYNRHGFTKRLEQCI- 278 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ Sbjct: 279 ----QNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDE 334 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 FG+IL ++ A + I P +L + SIG + + +L+N Sbjct: 335 FGLILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGTDARVLLQN 394 Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK RG N + F +++ R+ ++ +L A++ + L + Y P + D Sbjct: 395 ADTAMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFS 454 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I G EAL++W HP G IS F+ +AE+ +I+ + ++ + + W + P Sbjct: 455 INGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPG 513 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + INI+ + + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+ Sbjct: 514 RVAINISPEQFGNPQLIDYLEKLLRTTGLDPNCITFELTESAVMSDSEHTQQMLNAIKKL 573 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912 G +L++DDFGT S L+YL P D +K + + ++ K++ ++ +II + +++ T Sbjct: 574 GFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLSLT 633 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++A+ + + L+ + C IQ H P + + +L + Sbjct: 634 VVAEGVETQQQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|229177076|ref|ZP_04304467.1| Sensory box/GGDEF [Bacillus cereus 172560W] gi|228606398|gb|EEK63828.1| Sensory box/GGDEF [Bacillus cereus 172560W] Length = 689 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 121/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEIAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYDV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 THLLAIEVTEGALI-HKDISKRVLLQLKEKNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|186685421|ref|YP_001868617.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nostoc punctiforme PCC 73102] gi|186467873|gb|ACC83674.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nostoc punctiforme PCC 73102] Length = 611 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 132/441 (29%), Positives = 236/441 (53%), Gaps = 5/441 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I ++K +L A D+LTG+PNR F+ RL L+ + + + + V+ +D D++K Sbjct: 166 INSRQKLQSKLLDIALHDSLTGLPNRVLFMRRLDNALNRAKQESSYQFAVLFLDCDRFKV 225 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG VGD++L+S+ RR+ L D LARL G+ FGI+L + A + Sbjct: 226 VNDSLGHLVGDELLISIARRLQACLIPIDTLARLGGDEFGILLEKITDINIAIQVADRIL 285 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696 + +++ L E+ + ASIG + +L++A+ AMY AK +G F Sbjct: 286 QQLSLAFKLSRYEVFMNASIGISWGNKDYDRPEYLLRDADTAMYRAKAQGRAKYHVFNPA 345 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ DL AVE E + Y PI+ L+ +I G EAL++W HP G +S +E Sbjct: 346 MHQEAIQLLELENDLRRAVERQEFLVYYQPIVSLITGKISGFEALVRWQHPTRGLVSPTE 405 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I AIN ++L+ + W+ Q P P+ I +N++++ L E + Sbjct: 406 FIPVAEETGLINAINTWVLQSACHQLSIWQHQPVTPEPLTISVNLSARLFLQPNFVEQID 465 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +I +T +P+ ++L +ESV+M N +++ +L++ I L +DDFGT S LSYL Sbjct: 466 RIIYETKINPTYLELEITESVIMENTNAIKIIFQQLKQRSIKLVMDDFGTGYSSLSYLHS 525 Query: 876 IPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P + +K + S + + + + + ++I +A ++ + IA+ + E + +L + C+ Sbjct: 526 FPLNALKIDKSFVKRMQDNKENMGLVPAMIGIANSMGMSAIAEGVETEEQLAQLRSLNCN 585 Query: 934 YIQDSHVASPLGFNSILKLLK 954 + Q + P+ ++KLL Sbjct: 586 FAQGFLFSEPIEQQLVIKLLA 606 >gi|229188752|ref|ZP_04315789.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] gi|228594729|gb|EEK52511.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876] Length = 689 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 121/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYDV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 THLLAIEVTEGALI-HKDISKRVLLQLKEKNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|256828672|ref|YP_003157400.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum DSM 4028] gi|256577848|gb|ACU88984.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum DSM 4028] Length = 701 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 132/586 (22%), Positives = 259/586 (44%), Gaps = 25/586 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---------RVTTTPDIA 435 I+ L +Q + ++ L + ++V D + P A Sbjct: 126 VAIEIALYKHAAAQALQKSEQQYRLLFDSMLNGFALHEVVTDDKGKPRDLLFLDVNPAFA 185 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + L + + G L + + + + R + ++ Sbjct: 186 SFFDLPAKDIIGRSLRQLS-------EKVEPYWIDILA-KTALTRESIRFDSFAG---FV 234 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 ++ S + I D T +K + + + F D LT +PNR LDR+ + Sbjct: 235 DKHFSVVAFSP-QPRQVAAIFEDTTRRKDAEKHLQHRTFHDALTNLPNRALCLDRIQQAM 293 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + S D+ V+ IDID++K +ND LG VGD +L S+ + + + D +ARL + Sbjct: 294 ERSQVRDDYLFAVVQIDIDRFKDVNDSLGHLVGDQLLQSVGHVLLDTVSAVDTVARLGDD 353 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F ++L + ++ ++ +++ I ++A +G + + L+ Sbjct: 354 EFVVLLEELPSKKTGTATIKKIKSALNRTLDIEHHSIHISACLGALFGPNECTSPENFLQ 413 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRL-MD 732 A +A+ HA+ +G + + + + + L A+ +E +L PI + + Sbjct: 414 GANIALRHAQEQGLDQLRFYAPEMQDKAIKKLDTETRLRNAISENEFFLALQPIFSITQN 473 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + G EAL++W G + SEF+ IAE+ +I I ++LE+ + + SW ++ Sbjct: 474 ATLSGFEALLRWKPKHRGWVPPSEFIPIAEQTGLILPIGQWVLEQSCKVLHSWAEKYPGN 533 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 + + +N++++ D +L + + I +P+++KL +ES VM NPE + L ++ Sbjct: 534 TLSVSVNLSARQFSDPDLVHNLFSCIRHNRINPTQLKLEITESDVMTNPEATIQKLRIMK 593 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIET 911 ++G+++ +DDFGT S +SYL P DT+K + S +T I+R+II +A N+ Sbjct: 594 ELGLAILVDDFGTGYSSMSYLQRFPIDTLKIDRSFVTQLDKHANRVIVRTIINLAHNLGL 653 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 +++A+ I E L MGC+Y Q H + P+ + I + Sbjct: 654 SVVAEGIETEAQCLTLQEMGCEYAQGFHFSRPILLDEIDDFISRHL 699 >gi|258620323|ref|ZP_05715361.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM573] gi|258587202|gb|EEW11913.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM573] Length = 684 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 137/583 (23%), Positives = 260/583 (44%), Gaps = 36/583 (6%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSM 445 Q + + + +L D + + D ++ P A +LG Sbjct: 116 AQDTSEKQILVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGF--EDT 171 Query: 446 HGPIRNWLPYIHINDRDN--FRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMII 497 + L + I+++ F + L S + R R +E +V+ Sbjct: 172 QKLLGENLSRLFIDEKTKTVFSSQLASLLTERPLICLTGPRCGFERKVQLHAGS------ 225 Query: 498 RIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + S ++ + D E K+ +A D+LTG+ NR F RL + Sbjct: 226 --TSILGSQSQLI----LLQDADEAPKQLSATTQVDAHIDSLTGLYNRHGFTKRLEQCI- 278 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 + ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ Sbjct: 279 ----QNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDE 334 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 FG+IL ++ A + I P +L + SIG + + +L+N Sbjct: 335 FGLILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQN 394 Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+ AMY AK RG N + F +++ R+ ++ +L A++ + L + Y P + D Sbjct: 395 ADTAMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFS 454 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I G EAL++W HP G IS F+ +AE+ +I+ + ++ + + W + P Sbjct: 455 INGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPG 513 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + INI+ + + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+ Sbjct: 514 RVAINISPEQFGNPQLIDYLEKLLRTTGLDPNCITFELTESAVMSDSEHTQQMLNAIKKL 573 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912 G +L++DDFGT S L+YL P D +K + + ++ K++ ++ +II + +++ T Sbjct: 574 GFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLSLT 633 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++A+ + + L+ + C IQ H P + + +L + Sbjct: 634 VVAEGVETQQQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|254514971|ref|ZP_05127032.1| hypothetical protein NOR53_724 [gamma proteobacterium NOR5-3] gi|219677214|gb|EED33579.1| hypothetical protein NOR53_724 [gamma proteobacterium NOR5-3] Length = 681 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 124/681 (18%), Positives = 276/681 (40%), Gaps = 21/681 (3%) Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341 + + + L + FY + ++ +++ + + + Sbjct: 6 LLTSLSYWVLSLLWLVILGFYLTSRGQAQEDRNVSILLVILSIDAFRTVFESVYFGLYFN 65 Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 + +A+ + ++ P L+ L +VIL + + + Sbjct: 66 S-----LYGILSPSIAVELAKPSLVLLPKLINILAGLVILF-ILIRNWLPRAIREKRASD 119 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--IN 459 + S + + + + A + G + G IH Sbjct: 120 DALQLASTVFTHADEGIVIMSPEGVTLDVNAAFAALSGYGRAELIGSKVG----IHRSKE 175 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519 ++F + G R + + + + +G+I+R++ + D+ Sbjct: 176 HSNSFYAEIWRAAREE-GSWSGVIWNRHKSGVVYPAQMSVTAVMGPDGEIVRFVCMFTDV 234 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 E + + A D LTG+PNR DRL+ + T V+ +D+D +KK+ Sbjct: 235 AESVEQQRQLEHLAHFDLLTGLPNRSLLSDRLSQAVLQCETRSQ-SVAVLFVDLDDFKKL 293 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G D +L+ ++ + L+ D LAR G+ F +L + ++ ++ + + Sbjct: 294 NDQYGRPAADRLLLEVSSNMQGALRSVDTLARFGGDEFVAVLPNLDDEMQCETILTKLME 353 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + PI + + ++++AS+G + +++++A+ AMY AK +G + F S Sbjct: 354 GVRQPIKIADDNVSLSASMGVTLYPQDSADPEQLIRHADQAMYLAKGKGKGVWQYFDTSR 413 Query: 700 F--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 ++ ++ + A+ N L + P+I+L +E+VG+EALI+W+ + + F Sbjct: 414 DIAFQEQSRLQGSIRRALINGGFVLHFQPLIQLATQELVGVEALIRWETDDGECLEPAAF 473 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + + + + ++L I +W +Q I + +N+ L + L Sbjct: 474 LGATQNNALAVDLGDWVLRTAMAQIEAWSEQGLR--IGVSVNVDGFHLQQPGFAARLAEL 531 Query: 818 ISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +P+ ++L E+ + N E ++ ++G+S +DDFGT S LSYL + Sbjct: 532 LATHALVNPANLELEVLETSALDNLEAVATVMAECTELGVSFAIDDFGTGYSSLSYLRRL 591 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + ++I+ +I +A + T++A+ + E L +GC+ Sbjct: 592 PAQRIKIDQSFVRDMLDDASDLSIVEGVIGLAHAFKRTVVAEGVESEEHCHALLSLGCEL 651 Query: 935 IQDSHVASPLGFNSILKLLKE 955 Q +A P+ ++ + L++ Sbjct: 652 AQGYGIARPMPAEALPQWLED 672 >gi|170760605|ref|YP_001785694.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch Maree] gi|169407594|gb|ACA56005.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch Maree] Length = 862 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 126/450 (28%), Positives = 233/450 (51%), Gaps = 10/450 (2%) Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + + DITE KK E IL A+ D+LTG+ NR+ ++ + + +N R Sbjct: 417 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTISN---YENERFA 473 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG VGD VL ++ R LL + RL G+ F II+ + + Sbjct: 474 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 532 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + ++ I + ++ + ASIG + + +S ++KNA+ AMY AK Sbjct: 533 SDAEKLACKICTTLNHSIKYKKDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 592 Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 GG E + ++ D ++++ L A+E +EL + + PI L +I+ +E+L++W Sbjct: 593 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 652 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 I ++F+ +A+ + I I+ ++L + W+ Q +++ +NI+ K + Sbjct: 653 F-NNKIIGPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKSLYVSVNISFKQM 710 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + + ++ T PS + L +E M + + S L L++ GI ++LDDFGT Sbjct: 711 KDKNFVDNVLNILKTTKLKPSYLCLEITEDEAMEDVDLSIRTLESLKRHGIKISLDDFGT 770 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSY+ +P D +K + S++ + + I++SII M+K+++ IIA+ + Sbjct: 771 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVESIEQ 830 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ L + CD+IQ +++ PL + + Sbjct: 831 LEILQELDCDFIQGFYISEPLPIKTFESKI 860 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] gi|151282068|gb|ABR90478.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 876 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 164/815 (20%), Positives = 320/815 (39%), Gaps = 34/815 (4%) Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233 Y W + + V +LA + + +++ + + V+ Sbjct: 66 YFWFRETIFK-EAIYLCEMALAACVIIVLASYHPMPWLIAIAGIFPLVLRTRSAVIAISL 124 Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293 + L + + + A L + L L+ NR + I Sbjct: 125 LAILGYFLGHELGASTVDLLPDFFATACIGWLSVLLAKTLNLNRVTLHQAHTNERRFNAI 184 Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL------- 346 A + F I A + ++ R VL Sbjct: 185 ARVTRHIFIITDKHYRIKFANPALQEVIGYSIDEI--IRNAMRPVLHSDDEAAHKDKLRE 242 Query: 347 ---IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFS 402 + + + + I ++ + G I+ + Q + Sbjct: 243 LRDTPHSTVFSRHRMRHKDGHWIWLETRGYNMLHDAAINGLVFSIEDITLRKEAEQKLLE 302 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWL-------- 453 + + + +++ D + G + + G L Sbjct: 303 ETALLRAVLDLNPSMIYAKDNEGRFTISNQSFQKRFGFDSEDELRGKTALDLCQKIAGSK 362 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + + D V LQ E R + W P+ + G + Sbjct: 363 DELSPEVIADEIQRQDLQVMQSGQPLQDLEVRGFWRQDMDRWFHTSKYPLPDVKGKTIGV 422 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 +G+ DIT++K++ I A D LT +PNR+ ++ L T ++ S + T++ D Sbjct: 423 LGVTRDITKRKQTELQIEYQAMHDMLTDLPNRRFLVNTLNTAMETSRLRQS-SLTMLFCD 481 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D +K +ND G GD L+ +++RI L D +AR GN F I+ + ++ + Sbjct: 482 LDFFKSVNDTHGHDFGDQCLIEISKRIVTALPTADFVARFGGNEFVIL--TNSSLAEATI 539 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + +++ + + + SIG A + + ++++++A+ AMY AK RG N Sbjct: 540 KANTIMAAVSERLIFDNVVVKIQTSIGIAQLNAGHQSPADLIRDADAAMYQAKERGRNRT 599 Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 E + + + L A+E +EL + Y P + L D + G E L++W+ P++G Sbjct: 600 EIYDAALQSKTTKHARMDVALRFALERNELSVAYQPKVLLADGSVQGFELLLRWNSPEYG 659 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNE 809 IS +EF+ IAE M+ I ++ +E+ + + +W+ Q + + IN++ + LL Sbjct: 660 LISPNEFIPIAETSGMVVPIGMWAMEQACKQLAAWQQQYPEMGSLTMAINVSMRQLLQTS 719 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 ++ +++ + P ++L +E+ M NP ++ L L+K+G+ L LDDFGT S Sbjct: 720 FFSQVRDILNSSGVIPQMVELELTETSAMANPLQTMENLSMLKKLGVRLALDDFGTGYSS 779 Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L+YL +P D +K + + + G + I+R ++ +A+ + A+ + I+EL Sbjct: 780 LAYLQKLPIDILKIDKAFVRGIGSNQSDTEIIRLMMALAQTLNLQTTAEGVETFEQIQEL 839 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL--KERFPLV 960 +MGC+ Q ++PL L+ RFPLV Sbjct: 840 KKMGCNLGQGFLFSAPLTAQEAEALICTSHRFPLV 874 Score = 85.4 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 81/304 (26%), Gaps = 24/304 (7%) Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284 +L Y ++ F + + + + + F+ + + Y Sbjct: 20 TVSLLLYAALLFNVVVLVYDSNLALSPLGLGAAIALTGLLGASFVRYFWFRETIFKEAIY 79 Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 + +A I+ S++ +IA I + I Sbjct: 80 LCEMALAACVIIVLASYHPMPWLIAIAGIFPLVLRTRSAVIAISL--------------- 124 Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 L + L + + + + + + ++ Sbjct: 125 ------LAILGYFLGHELGASTVDLLPDFFATACIGWLSVLLAKTLNLNRVTLHQAHTNE 178 Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 R + + I D P + ++G + + P +H +D Sbjct: 179 RRFNAIARVTRHIFIITDKHYRIKFANPALQEVIGYSIDEIIRN--AMRPVLHSDDEAAH 236 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + L + R+R D + W+ R M + I + DIT +K+ Sbjct: 237 KDKLRELRDTPHSTVFSRHRMRHKDGHWIWLETRGYNML-HDAAINGLVFSIEDITLRKE 295 Query: 525 SLEG 528 + + Sbjct: 296 AEQK 299 >gi|226946915|ref|YP_002801988.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ] gi|226721842|gb|ACO81013.1| GGDEF domain protein [Azotobacter vinelandii DJ] Length = 689 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 123/436 (28%), Positives = 223/436 (51%), Gaps = 7/436 (1%) Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 + K+ ++ A DNLT +PNR DRL ++ + + + V+ ID+D +K I Sbjct: 250 SALSKANSELMQLALYDNLTKLPNRMLLADRLGQAIEKARREHKV-FAVLFIDLDGFKAI 308 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND G +GD +LV +T+RI ++ D +ARL G+ I+L A A + + Sbjct: 309 NDAYGHHLGDLLLVEVTQRIRGSVRGQDTIARLGGDE-LILLTEIGEPTDAAKIAGKLIE 367 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +I P ++ E+ V+AS+G A + + E+L NA+ AMYHAK +G + F S Sbjct: 368 TIRQPYSIEHHELFVSASVGIAVYPDDGLAPHELLVNADAAMYHAKEQGRDGYCFFENSM 427 Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 +++ + +DL A+E EL L Y P + D I+G+EAL++W HP+ G +S +F Sbjct: 428 NANAQEQLRLLQDLRHALERDELRLHYQPKLIAPDGPIIGVEALLRWQHPERGLLSPDQF 487 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+ +I I ++L+ I WR I +N+++ +L + ++ Sbjct: 488 LPLAEKTGLIVPIGNWVLDEACAQIQRWRAA-GHTSWNIAVNLSASQFAHAKLIDSVRTA 546 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + + + L +ES M + + S +L +L +G+ +++DDFGT S L YL +P Sbjct: 547 LQRHGLEAHNLTLEITESTAMRDADSSLAVLEQLAAMGVGISIDDFGTGYSSLLYLKRLP 606 Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 + +K + + + AI+ +II + + + I+A+ + K LTR+GC+ + Sbjct: 607 ANELKIDRGFVNELGQGGDDAAIVSAIIALGRTLGLKIVAEGVETPEQQKHLTRLGCNLL 666 Query: 936 QDSHVASPLGFNSILK 951 Q + P+ +++ Sbjct: 667 QGYLLGRPMPAEQLIE 682 >gi|149376883|ref|ZP_01894638.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Marinobacter algicola DG893] gi|149358775|gb|EDM47244.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Marinobacter algicola DG893] Length = 753 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 111/441 (25%), Positives = 220/441 (49%), Gaps = 6/441 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I++++ + + D LTG+ NR+ F++ L L ++ + +++ID+D+++ Sbjct: 304 ISQRQAVQKDLARLETTDALTGLANRRFFMEDLAHTLSIADRQMR-QAALVMIDLDRFQM 362 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG GD++L+ + R+ L ++A G+ F + N + + ++ Sbjct: 363 LNDSLGHQFGDELLIKVAERLNALSDEKVMVAYSGGDEFMVCQQHVENIDDVINLLGQIK 422 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + E ++TA++G A + S + + +L+NA++A+Y AK +G N + + Sbjct: 423 QCFEEPFAVQGEEHSITATMGVAVYPQSGLDADTLLRNADVALYRAKEQGRNTYQFYTEG 482 Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ +DL A+ N E L + P + L D I +EALI+W HP+ G + + Sbjct: 483 MQDREVMRLELDKDLNHALANDEFVLYFQPQLDLNDSSINSVEALIRWQHPRRGLLPPVD 542 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I I +++ R + W+ + I +N++ ++L D + + +Q Sbjct: 543 FIPLAEESGRITDIGRWVVMAACRQLAKWQK-GPYSHLRIAVNLSGRELDDESIVDHIQE 601 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + SR+++ +E + + N E + L +L K+G+ L +DDFG S L YL Sbjct: 602 ALESNGVPASRLEVELTEEIFIQNIEHNLNQLTKLHKLGVHLAIDDFGVGYSSLGYLRDF 661 Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S +T TE I R++I +A N+ ++A+ + + L CD Sbjct: 662 PVDLLKIDRSFITDVTERHDDAVITRAVINLAHNLGIQVVAEGVETHEQLTFLKNHRCDL 721 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ ++ P+ + + L Sbjct: 722 IQGYLISRPIPAGELERALSA 742 >gi|297537602|ref|YP_003673371.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301] gi|297256949|gb|ADI28794.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Methylotenera sp. 301] Length = 684 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 123/440 (27%), Positives = 238/440 (54%), Gaps = 6/440 (1%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K + + + AF D +T +PNR F +R+ + S L +MVID+D +K +ND Sbjct: 238 RKHAEDRLQQLAFYDEVTKLPNRHYFKERMEGAVASSIRYKKL-CCIMVIDLDDFKIVND 296 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 LG V DD+L+++ +R+ +++ D+L R+ G+ F ++L + + + A + ++ Sbjct: 297 TLGHNVSDDLLLAVAKRLSNVIRTSDVLCRIGGDEFALVLENILIAEEAIQVAKKIINTL 356 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 + P L RE+ + ASIG + + +L+NA+ AMY AK++G N + ++ Sbjct: 357 SQPFVLEGREVFIGASIGVSLCPTDTADIPILLRNADTAMYSAKNQGKNSYQMYQPEMES 416 Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + + ++ L A+EN+EL L Y P + L+ + G EAL++W++ + G IS ++F+ Sbjct: 417 KNILRFSLESALRRALENNELLLHYQPQVDLISNQTTGFEALVRWNNAELGLISPTDFIP 476 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAEE+ +I I F+L WR++ + I I +N++ + L+ + E + A++ Sbjct: 477 IAEEIGLIIPIGEFVLYTACLQAQQWRER-HAVDINISVNLSGRQLIQANIVERILAIVE 535 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 T + + + +ES++M + + + L +L + G ++++DDFGT S +SYL P D Sbjct: 536 STGLPFNLLTIELTESILMDHSKETLDKLEKLSQSGFTISIDDFGTGYSSMSYLKRYPID 595 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 T+K + S ++G +AI ++II +AKN++ ++A+ + E ++ L CD Q Sbjct: 596 TLKIDRSFVSGLPEDANDVAITQAIIALAKNLDMKLVAEGVETEEQLEFLRVHKCDTAQG 655 Query: 938 SHVASPLGFNSILKLLKERF 957 + P+ + + + Sbjct: 656 YLHSRPVVAEQAEQFILNKN 675 >gi|160899026|ref|YP_001564608.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160364610|gb|ABX36223.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Delftia acidovorans SPH-1] Length = 1120 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 134/618 (21%), Positives = 265/618 (42%), Gaps = 35/618 (5%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422 + + + L L ++Q + A + Q + + + Sbjct: 469 GSLVWVELHISALGHGPSLRLMALVQDISARRHLQQMQRDGSRHLRMVIQRLPLGLAMLQ 528 Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--RDNFRTILDSFVGYRRGRLQ 480 + + G + + W + ++ R + ++ R Sbjct: 529 EDGRFAYWNEEFMRLAGHGATAGM-DGDGWWRNMCPDEARRQRMQRRFEAAQARARVAQS 587 Query: 481 --------------YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 E+++ +D + I + + I D +++K + Sbjct: 588 PHGSESDSCGTLNSEEYQLIGSDGCARSVSIGGMLLDE------GCLLILQDQSQRKTAE 641 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 E I AF D LTG+PNR+ +DRL L S VM++D+D +K ND LG+ Sbjct: 642 EEIRRLAFYDALTGLPNRRLLVDRLQQALASSRRRGRC-GAVMLLDVDNFKAFNDSLGLE 700 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSLKIADFAIAMRKSI 641 +GD +L + R+ + L LAR SG+ F ++L + + K+ MR + Sbjct: 701 LGDVLLRMIAERLAQSLGREATLARHSGDDFVVLLEDLGKDSMHAASKLEGEVQRMRSLL 760 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 P+ L + +T SIG + + ++++ E+L+ AE+AMY AK G N ++ F Sbjct: 761 LQPLQLSGQSCHITLSIGASLFGEQELSADEVLRRAEMAMYQAKGMGRNTLQFFDPQLQA 820 Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 R +++++ + S+ L Y P + + IVG E L++W+HP+ G + S F+ Sbjct: 821 VLRSRTAMEQEMREGLVRSQFVLYYQPQV--ANGRIVGAEGLLRWNHPREGLVPPSLFVS 878 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 +AEE +I+ + ++L R + W + +M + + +N++ + E + + Sbjct: 879 LAEETGLIQQLGEWVLGEACRQLAQWAAEPDMACLMLAVNVSPRQFHQARFVEQVLQALK 938 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 + +P +KL +ES+++ + + + + L+ G+ +LDDFGT S L+YL +P D Sbjct: 939 EHGANPRLLKLELTESLLLADVDDTAAKMATLKAHGVGFSLDDFGTGYSSLAYLKRLPLD 998 Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + S AI R+I+ + ++ +IA+ + E + L C Q Sbjct: 999 QLKIDRSFVRDVLSDPNDAAIARTIVALGTSLGLQVIAEGVETEAQRQFLEDQHCHAWQG 1058 Query: 938 SHVASPLGFNSILKLLKE 955 ++ P+ S L+++ Sbjct: 1059 YLLSPPVPVRSFEALVRQ 1076 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 32/282 (11%), Positives = 75/282 (26%), Gaps = 25/282 (8%) Query: 272 YLHWNRWHAKVGYITFSGIA-CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330 +L +V + ++ + + + A + Y Sbjct: 238 FLGTADVSIRVHDLVQDLHERGFLGRLALAMHDAGPVSP---LPPAGVSPLPLYLGAAWP 294 Query: 331 MKGYERAVLLIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVI 380 +G E L +++ + G+++ V+ Sbjct: 295 ERGQEAVGLGDTGQVVLEQTLQAQDRLWRLNFIPVSTALSWTERAQPLVLFALGMLVSVL 354 Query: 381 LIGFTVIQHVL------ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPD 433 L S+ + R + V D + + Sbjct: 355 LASLAAAWWRRHPSSWAQLRASSRSMRESDARFQALFEQAAVGVVQIDAANGNVLHVNRR 414 Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493 I G + + L + + R +L +R LQ E ++R +D Sbjct: 415 YCDITGHEAQQLCQRP--LLALVAAETVEGDRLLLQELAAGQRRALQIERQLRRSDGSLV 472 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 W+ + I + +G LR + + DI+ ++ + + Sbjct: 473 WVELHISAL--GHGPSLRLMALVQDISARRHLQQMQRDGSRH 512 >gi|206968444|ref|ZP_03229400.1| sensory box/ggdef family protein [Bacillus cereus AH1134] gi|228951038|ref|ZP_04113158.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068233|ref|ZP_04201538.1| Sensory box/GGDEF [Bacillus cereus F65185] gi|206737364|gb|EDZ54511.1| sensory box/ggdef family protein [Bacillus cereus AH1134] gi|228714892|gb|EEL66762.1| Sensory box/GGDEF [Bacillus cereus F65185] gi|228808645|gb|EEM55144.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 689 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 121/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYDV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 THLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|217958084|ref|YP_002336628.1| sensory box/GGDEF family protein [Bacillus cereus AH187] gi|222094300|ref|YP_002528359.1| sensory box/ggdef family protein [Bacillus cereus Q1] gi|229137351|ref|ZP_04265964.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] gi|229194863|ref|ZP_04321647.1| Sensory box/GGDEF [Bacillus cereus m1293] gi|217068064|gb|ACJ82314.1| sensory box/GGDEF family protein [Bacillus cereus AH187] gi|221238357|gb|ACM11067.1| sensory box/GGDEF family protein [Bacillus cereus Q1] gi|228588619|gb|EEK46653.1| Sensory box/GGDEF [Bacillus cereus m1293] gi|228646111|gb|EEL02332.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26] Length = 689 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 121/549 (22%), Positives = 245/549 (44%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQILNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ + + K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPGIHLFREHDDQFVMLIENIT-KERVEGVSKNILKRISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|289207706|ref|YP_003459772.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Thioalkalivibrio sp. K90mix] gi|288943337|gb|ADC71036.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Thioalkalivibrio sp. K90mix] Length = 685 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 121/475 (25%), Positives = 229/475 (48%), Gaps = 33/475 (6%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 + E+ + E ++ +A D LTG+PNR+ F DRL + A + V+ +D+D++K Sbjct: 211 VVERNRHAERLIHHASHDPLTGLPNRRLFHDRLEHAIARYAREPESLFAVLFVDLDRFKL 270 Query: 579 INDVLGIAVGDDVLVSLTRRI---------------GELLKFPDILARLSGNRFGIILIS 623 +ND LG GD++L + +R+ + + D LARL G+ F I+L Sbjct: 271 VNDSLGHTAGDELLAQVGKRLLTALRQNDTVSRPGGNQNTRPDDTLARLGGDEFTILLEG 330 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT------------SSKITSS 671 + + A ++ + P ++ + + VT SIG A+ + Sbjct: 331 LHEPVDALRVAERLQAILHQPFSIAGQTVYVTVSIGIATRPYGQACPVVSPDQDGPTCAE 390 Query: 672 EMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729 ++++ A++AMY AK G + S + + ++ L +VE + + Y PI+ Sbjct: 391 DLMREADMAMYRAKSLGKARCEFCDPGMQSQALESLRLETSLRESVERNAFVVHYQPIMS 450 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L D I G EAL++W+ + + F+ IAE+ ++ I++ +L + +W Q Sbjct: 451 LADNRITGFEALVRWER-EGELLPPDRFIPIAEDAGLVHLIDMQVLYTACSQLQAWNAQR 509 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 + PP+ I N++++ L EL + + ++ T P +++L +E+ +GN + L Sbjct: 510 SGPPLTISTNLSARQLTRPELVDEVATILCGTDTPPEQLRLEITETATLGNLDELIATLK 569 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAK 907 L+ +G+SL +DDFGT S LSYL +P D +K + + + G +++++I MA+ Sbjct: 570 GLKALGVSLAMDDFGTGYSSLSYLHRLPLDILKIDRAFVAGLDRDEYSQRLVQTVINMAR 629 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL-KERFPLVK 961 N+ +A+ + L +GC Q + + P+ + LL ++ PLV Sbjct: 630 NLGLEAVAEGVESNTHAATLRALGCTRAQGYYYSRPVPADRAGDLLAADQLPLVT 684 >gi|228956965|ref|ZP_04118744.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802720|gb|EEM49558.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 689 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 122/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 LFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KECVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K S Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E IIA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|307153583|ref|YP_003888967.1| Chase sensors-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306983811|gb|ADN15692.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece sp. PCC 7822] Length = 859 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 137/431 (31%), Positives = 226/431 (52%), Gaps = 9/431 (2%) Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 + DNLT +PNR+ F+ +L +D + ++D+D +K IN+ LG GD VL Sbjct: 425 YYDNLTYLPNRRLFIKKLQRSNPRQKSDYKQLIAIYLLDLDSFKMINEGLGHEAGDYVLR 484 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + +R+ + + LAR+ G++F + L S + + A A ++K + P +EI Sbjct: 485 EIAQRLQTQVNNKEQLARVEGDKFALWLNSLVDIDEAAQIAKDLQKLLTQPFYWQGQEIY 544 Query: 654 VTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710 + SIG A + E+L++A AMY AKH G + E F R+ I+ D Sbjct: 545 TSVSIGIAYTRRGDNFKAEELLRDANSAMYKAKHIGKDRYEMFATGMREPVVQRLQIESD 604 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 L +++SE L Y PI+ L +I G+EAL++W+ K G IS +F+ IAEE +I + Sbjct: 605 LRRGLKDSEFQLFYQPIVSLKTGKIAGVEALVRWNSLKRGFISPGDFIPIAEETGLIIPL 664 Query: 771 NLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829 ++L+ R + W Q PP+ I +N++S+ L + +Q ++ K +K Sbjct: 665 GEWILQEACRQMQEWHLQFPQNPPLMISVNLSSRQFSQPNLVQQVQFILDKINLDRKSLK 724 Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889 L +ES++M + E + LL RL+ +G+ L++DDFGT S LSYL P DT+K + S + Sbjct: 725 LEITESMMMNDVEAAIELLKRLKDLGLRLSIDDFGTGYSNLSYLHRFPVDTLKVDQSFVR 784 Query: 890 GST-----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 ++ I+R++I + N+E +IA+ I E +K L +GC+Y Q A PL Sbjct: 785 RMNSGESHDRYAQIVRTVIMLGHNLELDVIAEGIETEEQMKILQSLGCEYGQGYFFAKPL 844 Query: 945 GFNSILKLLKE 955 + LL + Sbjct: 845 PSEQLAALLAK 855 >gi|229588015|ref|YP_002870134.1| hypothetical protein PFLU0458 [Pseudomonas fluorescens SBW25] gi|229359881|emb|CAY46734.1| conserved GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25] Length = 894 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 150/568 (26%), Positives = 270/568 (47%), Gaps = 17/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + + P I ++ +HG LP + Sbjct: 333 RRTATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYSAEEVHGHRLAQLPAL 392 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L + Q EF+ R + + +W + I + N ++ YIG Sbjct: 393 -----ENLSELLFDAPSSLAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 447 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID Sbjct: 448 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDSPISLLLVDID 504 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L LAR + N F ++L + + A Sbjct: 505 NFKRINDSLGHQTGDKLLISLARRLRNSLSTGGSLARFASNEFAVLL-DDTDLETGQLVA 563 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P+ + + I+VT S+G A +++NA LA++ AK G + V+ Sbjct: 564 SQLLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQV 623 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++G+EAL++W+HP+ G I Sbjct: 624 FTEALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMI 683 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I ++ + R M + + IN++ K D +L Sbjct: 684 RPDQFISVAEETGLIIPIGKWIARQACRMSRQLTAA-GMGNLQVAINLSPKQFSDPDLVA 742 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++ + + ++L +E +++ E +RL L +L+ G++L +DDFGT S LSY Sbjct: 743 SIATILKEERLPANLLELELTEGLLLEATEDTRLQLDQLKSFGLTLAMDDFGTGYSSLSY 802 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + S + + + I ++I MA N++ ++A+ I + L R Sbjct: 803 LKKFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETAEQLAFLRRH 862 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958 CD Q P+ +L +LK R+P Sbjct: 863 RCDVGQGYLFDRPIPGAELLAMLK-RYP 889 >gi|190889820|ref|YP_001976362.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652] gi|190695099|gb|ACE89184.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652] Length = 777 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 140/749 (18%), Positives = 288/749 (38%), Gaps = 50/749 (6%) Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271 R + I A A+ + + L+ + + LS + Sbjct: 43 AGRRKLWIGASAFAFGTGVWATHFIAMLAYDGGM-PISYQLGLTALSFLLSVAGSW--AA 99 Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA---SIARITLASIVLYYTYFIIY 328 L ++ + I + + I + + + + + Sbjct: 100 ILVASKGRGRFSSIQGGVLMALGIAAMHLTGMQAIETQAEILYDPYMTVTAVLAGALLSS 159 Query: 329 HGMKGY----------ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 + ++ + A + + + ++ L L+ Sbjct: 160 IAFHAFFHLKGLRRLLASSITFVLAICA-LHFISMASITLVPDPGKEVPATVLDTSLLAT 218 Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 ++++ T + + F + +D + S + + + T + Sbjct: 219 IVVVAATALILIAIAVAFFESHLTDLRGLA---NASQEGLVILR-EGRIIDTNERFQGLS 274 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + G + +L + G R E ++ + + + + Sbjct: 275 GWKLADLSGKAPSI--------------VLTAVQGQNRP---GETLLKTRNGREIAVEVN 317 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 + + + D+TE++++ E I A D LT +PNR F R+ L ++ Sbjct: 318 TSRIVYRGHNCD--VLAVRDLTERRQAEEIIEHLAHHDVLTDLPNRSLFDKRIRQALQMA 375 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 N + ID+D++K +ND+ G A GD +L + + + D +ARL G+ F Sbjct: 376 K-GKNSEVALFYIDLDRFKTVNDIFGHAEGDRILCKVAAILRRVADERDTIARLGGDEFA 434 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 II + A A+ A +++ V S+G A + + E+ NA+ Sbjct: 435 IIQSAGQQPAAAQKLAAAILDEFAAEMDMARDPTAVGVSLGIALYPADGSDPDEICNNAD 494 Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +A+Y KH G F R I+ +L A+ +++++ Y P++ EI Sbjct: 495 IALYRVKHGGRGKACFFNAEMDEATRARRQIESELRHAIIRNQIHVSYQPVLDAQSGEIS 554 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++W+ P G F+ IAEE I + ++L++ ++ W D P+ I Sbjct: 555 GYEALMRWNRPGHGLSEPDIFIPIAEESGSIVQLGEWVLQQACKEAARWPD-----PLRI 609 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ + LCE ++A++ +T +P+R+++ +E+ ++ + +R L RLR +G+ Sbjct: 610 AVNVSPVQFMLPNLCERIEAILKETGLAPARLEIEITEAALIRDRDRVMATLQRLRSLGV 669 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTII 914 + +DDFGT S LS L PFD +K + S A I+R+II + ++ ++ Sbjct: 670 HIVMDDFGTGFSSLSNLRTFPFDKIKVDRSFTGMLEHDAAARSIVRAIIGLGHSLGMPVV 729 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + + E + + GC +Q + P Sbjct: 730 TEGVETEAQRQIVVEEGCAQVQGFLLGRP 758 >gi|146280132|ref|YP_001170289.1| hypothetical protein Rsph17025_4133 [Rhodobacter sphaeroides ATCC 17025] gi|145558373|gb|ABP72984.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC 17025] Length = 875 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 168/781 (21%), Positives = 310/781 (39%), Gaps = 45/781 (5%) Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIP--TFAMAWVVLGYISIDFGFLSK 241 + S +Y ++I A +A + + + S + A + L + + FG LS Sbjct: 127 RITSVQIYNFLLIYCALFIACLFLLHFDIKHSVLGPAQTAVAYLYPALWFSVLAFGILSL 186 Query: 242 LVNLPSG--ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299 + L A + + ++ ++ + + + + L Sbjct: 187 IFFDHGKRSFPLFLLVIGIAAEAVADFWYVRAIMNGTYTPGGMTLLLWLSTTGLVALAAA 246 Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359 + A + + L + A+ I I + + Sbjct: 247 EHLALIRRAGLTQSALRRRTDAGIA----------QAALPGIVIAIFMLSGSLSGAFGRN 296 Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA--VLGSGDI 417 L+ V + L T R+ LA + + D Sbjct: 297 WEYVAFSSVLGLIFAAVAALREYAVIRSHEALRTEAEESREEVSLSRRRLAAVLESTSDA 356 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 V +D + + L G ++ S R+ Sbjct: 357 VVVFDRSMRVEYFNENAVSAL--EGVGAPGLGASFTEIFPETSFPGALVRFRSA-QSRQE 413 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 ++Y+ + D W+ I P SNG + + D+TEQ+ + E + A D Sbjct: 414 PMEYDALLSGPD---RWLSINGYP---SNGGLSIF---FRDVTEQRTARERMAHLAHHDP 464 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 +TG+ NR F + L + L +V++ID+D +K +ND LG +GD VLV + R Sbjct: 465 MTGLANRMKFSEELQRCVSL-----ETPVSVLLIDLDNFKDMNDTLGHPLGDAVLVEIGR 519 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ +L++ ++ ARL G+ F +++ + + + + A + I+ PI L + + VTAS Sbjct: 520 RLQQLMRPGNLAARLGGDEFAMLIFGQQDRIALGAIAERVLARISAPIALPNQTVRVTAS 579 Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAV 715 +G A +E+++ A++A+Y AK F + +R I DL A+ Sbjct: 580 MGIAM--DDVANRAELVRTADIALYEAKRDNRGTYRFFDGAMEIRLRERTAIIADLTAAL 637 Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775 N+E + Y P+ L I G EAL++W HP G +S F+ IAE+ +I I ++L Sbjct: 638 GNNEFVVHYQPLYELASHRICGFEALLRWTHPVRGLVSPEVFIPIAEDTGLIHQIGAWVL 697 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 W + I +N++ + D L + ++ +T P+R++L +E+ Sbjct: 698 RTACTAAADWPA-----DVRIAVNLSPRQFRDLGLPTMVARVLEETGLRPNRLELEVTEA 752 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893 ++ + + + +L ++GI + LDDFGT S LSYL PF +K + S +TG +E Sbjct: 753 ALLDDSGSNLDIFAQLNRMGIRIALDDFGTGYSALSYLQKFPFAKLKIDRSFITGLPDSE 812 Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +AI+ +I MA + + A+ + L C+ IQ ++ P+ I LL Sbjct: 813 SSMAIVSAICSMAHALSIRVTAEGVETRDQFDWLQTR-CNEIQGYLISRPVPAGRIPDLL 871 Query: 954 K 954 Sbjct: 872 A 872 >gi|294812804|ref|ZP_06771447.1| Sensory box/GGDEF family protein [Streptomyces clavuligerus ATCC 27064] gi|326441246|ref|ZP_08215980.1| hypothetical protein SclaA2_09271 [Streptomyces clavuligerus ATCC 27064] gi|294325403|gb|EFG07046.1| Sensory box/GGDEF family protein [Streptomyces clavuligerus ATCC 27064] Length = 601 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 137/545 (25%), Positives = 255/545 (46%), Gaps = 17/545 (3%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D V P A ++G ++ L + + + RR R + Sbjct: 59 DPEGSVVHANPAFAALIGGEPAALRARPAADLLDLASDRHA--WHAYREVLRGRRSRFRC 116 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 R++ +D W + + P+ G + D+ E+++ + D +T + Sbjct: 117 TRRLKHSDGSVLWAEVAVAPLKGGPG----AVLSVTDVGERRELRARLRHLQMHDAVTRL 172 Query: 542 PNRQSFLDRLTTILDLSATDDN--LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 PNR F +RLT L+ SA D R + +D+D +K IND LG +GD +LV++ R+ Sbjct: 173 PNRALFFERLTAALESSAYDHGSTGRIGLCYLDLDGFKAINDTLGHRIGDRLLVAVAERL 232 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 E ++ARL G+ F +++ + ++ + A + ++ P +L + ++V+ASIG Sbjct: 233 TECTGDGHLVARLGGDEFAVLVEESTGTEQVTEVARTVLDALQRPFDLDGQRLSVSASIG 292 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVEN 717 + T++ +++ A+ +Y AK G F R + L AVE Sbjct: 293 VVERAVAGTTATGLMQAADTTLYWAKEDGKARWTLFDPERNAHRVTRQALSSTLRPAVER 352 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E L Y P++ L D G+EAL++W+HP++G ++ + F+ IAEE I + ++L Sbjct: 353 GEFALEYQPLVGLADGVTRGVEALVRWNHPEFGTLTPNRFVGIAEEDGSIVQLGRWVLRT 412 Query: 778 IARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 R W+ PP+F+ +N+A + + D++L + ++++T +P ++L +ES Sbjct: 413 ACRQARQWQRDHPHAPPLFVSVNVAVRQVWDSDLVADVAEILAETGLAPRLLQLELTESA 472 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG------ 890 VMG+ R L L +G+ + +DDFGT S L+YL +P +K +GS + G Sbjct: 473 VMGSAGRPLQALQALSDMGVQIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFQDEAH 532 Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 I+ +++ +A + T+ A+ + L R+GCD Q + + + I Sbjct: 533 PNPADETIVEAMVQLAHRLGLTVTAECVETSGQAARLRRIGCDTGQGWLYSRAVPPDRIG 592 Query: 951 KLLKE 955 +L+ Sbjct: 593 ELIDA 597 >gi|134099511|ref|YP_001105172.1| PAS:GGDEF [Saccharopolyspora erythraea NRRL 2338] gi|133912134|emb|CAM02247.1| PAS:GGDEF [Saccharopolyspora erythraea NRRL 2338] Length = 914 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 148/611 (24%), Positives = 268/611 (43%), Gaps = 16/611 (2%) Query: 351 FIGLWMAITKRLDNDIIQPAL--VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-Q 407 +G + + + + + AL +VI I + + E+ Sbjct: 308 LVGAPLQPEELVSSGGVTEALHRRSDGAALVIRISAAEMDSGFVLVCADETARRRAEQDF 367 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + V + V + P ILG + + G P + Sbjct: 368 ATVVAALDEGVVVVGRSGVIESANPASQRILGAPASQIIGTRPTSWPTFDESGAAMRPEE 427 Query: 468 LDSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 S + G + R+ D + W+ + R ++ + + DIT+ + + Sbjct: 428 QPSSLAQWTGEPENSRVVRLVRPDGRSVWLSLTSRSLTPQDRPPHMVVTSFTDITDSRAA 487 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 E + A D LTG+ NR L L + D V+ ID+D +K IND LG Sbjct: 488 RERLEYEATHDPLTGLANRTLALRHLA-----VSRDRTRAIAVLFIDLDNFKLINDSLGH 542 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 VGDDVL + R+ + D++ RL G+ F +++ E++ + + A + ++ PI Sbjct: 543 GVGDDVLRIVGERLFRTSREEDLVGRLGGDEFVVLVHDESDDDVLRELATGLLAALTEPI 602 Query: 646 NLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 ++ R++ V SIG E+L++A++AMY AK RGG E F V S + Sbjct: 603 HVQGRQLHVNGSIGIVLSRPGDTRAGPELLRDADVAMYQAKTRGGGRYEFFDVELRESMQ 662 Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 +++DL AV+ +L++ Y ++ L DE VG+E L++W HP G +S EF+ +AE Sbjct: 663 RSMVLEQDLRHAVQQDQLWVAYQRVVDLRDERTVGVEGLLRWTHPVHGTVSPGEFIPLAE 722 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + +I +I ML R + + R++ + + N++ + L D L ++ ++ Sbjct: 723 QSDLINSIGAHMLRMATRQVAAERERGG-EGLRLNANLSPRQLDDPYLQVLVKQALTDAG 781 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + L +E+ +M +P S +L LR++G+ L +DDFGT S L+ L +P DT+K Sbjct: 782 LPAHALCLEVTENAIMHDPAASARVLSSLRELGVRLAIDDFGTGYSSLAQLRRLPLDTLK 841 Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S +T ++ SI+ MA + ++A+ + + L +GCD Q ++ Sbjct: 842 IDRSFVTDLDSSEELRVMINSIVAMAHAVGLDVVAEGVETARQLDLLGEVGCDQAQGFYL 901 Query: 941 ASPLGFNSILK 951 P + Sbjct: 902 GRPGPIERLRD 912 Score = 63.4 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 6/151 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LAS 442 ++++V Q + +R L S D + P + TILG + Sbjct: 118 IGLVRNVTGAHRDRQALSDLADRYRLLAELSPDAICVHQ-DNIIRYVNPAMGTILGAQSP 176 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G ++ + R + S + E +R D + + Sbjct: 177 AQLLGRPVT--DFVAPDSIPQMRKRIRSLEAPGATTPRAEAELRRIDGTTVPVELVAVHT 234 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + ++ +G D++ QK + E + A Sbjct: 235 TWEGSSAVQVVG--RDVSAQKTAEETLRFQA 263 Score = 42.2 bits (98), Expect = 0.48, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 21/151 (13%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + E LA+ G + W +D D VT + ++LG+ R + Sbjct: 16 EREFLDLALSMHGAVRWTYDFASDEVTWAEGMDSLLGVPRAGHAELSRRLRGLVEPLVVS 75 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 T L E V A++ + R IG+ ++T Sbjct: 76 ARTTPLWE-------DFDLEQPVDTAEDGQRLLHFHARA-HGEGTRTSGLIGLVRNVTG- 126 Query: 523 KKSLEGILCNAFQD--NLTGIPNRQSFLDRL 551 A +D L+ + +R L L Sbjct: 127 ----------AHRDRQALSDLADRYRLLAEL 147 >gi|157375530|ref|YP_001474130.1| signal transduction protein [Shewanella sediminis HAW-EB3] gi|157317904|gb|ABV37002.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Shewanella sediminis HAW-EB3] Length = 817 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 131/442 (29%), Positives = 219/442 (49%), Gaps = 14/442 (3%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 KS E I AF D LTG+PNR F L L+ + D + VM ID+D +K IND L Sbjct: 366 KSNEKIRELAFNDPLTGLPNRFMFTKHLNLSLESAKCDRG-QLAVMFIDLDNFKHINDSL 424 Query: 584 GIAVGDDVLVSLTRRIG---------ELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 G GD +L + R+ E D++ARL G+ F + L + A Sbjct: 425 GHQSGDQLLHEIGDRLHRNLRSKDFCEHFSDSDMVARLGGDEFTVFLGELPSINIAEKVA 484 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + I+ PI L + ++ASIG A + + +T+ E++KNA++AMYHAK +G + Sbjct: 485 KRILEIISQPILLSGKSYYISASIGIACYPQNGVTTQELIKNADIAMYHAKKKGKGGYQH 544 Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F + + +I++ + AVEN L + PI+ IV LEALI+W ++G I Sbjct: 545 FSDNLSRQNDEFSVIEQKMHEAVENERFELYFQPIVDSNTHRIVSLEALIRWYDVEFGFI 604 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AE+ +I I +++ R + W+D + I + IN+++ L + + + Sbjct: 605 PPDKFIPLAEKNGLITVIGDWVIREACRQLKIWQDS-GIVDIQLAINVSAIQLNNPKFAQ 663 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + I + P + + +E+ ++ + + L LR GI + LDDFGT S LSY Sbjct: 664 ELYQTIKNSGIIPGTLYIELTETTIINGEQEIFVTLEWLRSKGIRVALDDFGTGYSSLSY 723 Query: 873 LGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 L +P D +K + S + + IL ++I MA + ++A+ + + L + G Sbjct: 724 LRNLPIDILKIDQSFIRDINDKNNNVILSAVIVMAHALGFKVVAEGVEERGHLAFLVKEG 783 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 CD +Q + P + I +LL Sbjct: 784 CDLLQGYMFSRPQTADDITRLL 805 >gi|226357418|ref|YP_002787157.1| diguanylate-cyclase [Deinococcus deserti VCD115] gi|226319408|gb|ACO47403.1| putative diguanylate-cyclase [Deinococcus deserti VCD115] Length = 856 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 118/439 (26%), Positives = 223/439 (50%), Gaps = 8/439 (1%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + + A D LTG+PNR F +RL IL+ S ++ +D+D++K +ND Sbjct: 416 HHQLTAQLRHQAQHDALTGLPNRSLFTERLAEILEQSERS-RASTALLFVDLDEFKGVND 474 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 +G VGD VL ++ R+ + D++AR+ G+ F ++L I A + + Sbjct: 475 TVGHHVGDYVLQAVADRLLGCARRGDVVARVGGDEFTLVLPFAEEPHAIT-VARRVLNEL 533 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700 P + R + ASIG + + +L++A+LAMY AK G V +++ Sbjct: 534 TRPFVVQGRAFHLGASIGISVSPQAGRDGQTLLRHADLAMYRAKREKSGFAVFEAQLNQQ 593 Query: 701 RSDRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ + DL A+ + L L Y P +RL D ++VG EAL++W HP G +S ++F+ Sbjct: 594 AQLRLQLASDLREALREPGANLELHYQPQVRLHDGQVVGAEALVRWRHPHLGMVSPAQFI 653 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AE+ MI + +++E R ++W + + + +N+++ + + + A + Sbjct: 654 PVAEDTGMIVPLGTWVMEEACRQAVAWAAAGHG-AMRVAVNVSALQFARPDFVDTVSATL 712 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 T R+++ +ES VM + + S + RLR +G+S+ +DDFGT S LSYL +P Sbjct: 713 RATGLEAGRLEVELTESAVMEDVKESVERMERLRALGVSVAVDDFGTGYSSLSYLQRLPL 772 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 + +K + + + +++++I+ +A+++ +A+ + + + L +GC Y Q Sbjct: 773 NVLKIDRTFIQNLGVNATSRSVVQAIVGLAQHLNLECVAEGVETPDEREALIEVGCRYAQ 832 Query: 937 DSHVASPLGFNSILKLLKE 955 A PL ++L+ L + Sbjct: 833 GFFFAKPLPAPALLEWLSQ 851 Score = 56.1 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 4/134 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 L + S D++ +P + LG + +H D Sbjct: 22 YRLLIEHSTDLIALLGAEGQVQYLSPSVHAHLGYNDSCDSVANKFAYQLVHREDWPTLIK 81 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE--QKK 524 + R L+ FRVR A + WM + + + DI + D+TE + K Sbjct: 82 RIHDTRPGGRAALEP-FRVRHAYGHWCWMEGTVVNLL-EHPDIRANLLAVRDVTETVRVK 139 Query: 525 SLEGILCNAFQDNL 538 + + D L Sbjct: 140 AELLARTQEYTDLL 153 Score = 42.2 bits (98), Expect = 0.48, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 59/219 (26%), Gaps = 20/219 (9%) Query: 356 MAITKRLDNDIIQPALVGGLVLIV-ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 + + V L+ I ++ V T + + + + + Sbjct: 97 FRVRHAYGHWCWMEGTVVNLLEHPDIRANLLAVRDVTETVRVKAELLARTQEYTDLLESI 156 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474 D + D V +LG ++ + G ++ W + D+ I Sbjct: 157 TDAFYVLDRDWRFVYVNTYAQRLLGKSAEELLGQVK-WE--VFPESVDSLVGIHYREAMR 213 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 ++E + W + P DI+ +K + + Sbjct: 214 SGVPQKFEV---HYEPLELWAEAHLYP------SARGLSVSFQDISARKATERAERQRSR 264 Query: 535 QDNLT--GIPNRQSFLDRLTT-ILDLSATDDNLRPTVMV 570 LT G P L L + + +V++ Sbjct: 265 ILELTVQGTP----LEQVLHEVALLVEQQCPGVLCSVLL 299 >gi|70734011|ref|YP_257651.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens Pf-5] gi|68348310|gb|AAY95916.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5] Length = 897 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 147/581 (25%), Positives = 266/581 (45%), Gaps = 43/581 (7%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + + P I ++ +HG + LP + Sbjct: 336 RRAATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYSTEEVHGHRLSELPAL 395 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L + Q EF+ R + + +W + I + N ++ YIG Sbjct: 396 -----ENLSELLFDAPSSLAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 450 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DIT+ K + + I A+ DNLT + NR +F+ L A D + +++++DID Sbjct: 451 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDTPISLLLVDID 507 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L LAR + N F ++L + + A Sbjct: 508 NFKRINDSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEFAVLLDN-TDLETGQQIA 566 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P+ + + I+VT S+G AS +++NA LA++ AK G + V+ Sbjct: 567 SQLLMTLDKPMFVDNQLISVTGSVGLASAPLHGRDPQTLMRNAGLALHKAKANGKHQVQV 626 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++G+EAL++W+HP+ G I Sbjct: 627 FTEALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMI 686 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I ++ + R M + + IN++ K D +L Sbjct: 687 RPDQFISVAEETGLIIPIGKWIARQACRMSKQLTAA-GMGNLHVAINLSPKQFSDPDLVA 745 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGN-------------PERSRLLLGRLRKIGISLT 859 + +++ + E + + + L +L+K+G++L Sbjct: 746 SIASILKE-------------EQLPSSLLELELTEGLLLEATDDTHQQLEQLKKLGLTLA 792 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S + + + I ++I MA N++ ++A+ Sbjct: 793 MDDFGTGYSSLSYLKKFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKIKVVAEG 852 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I + L R CD Q P+ + ++ LK R+P Sbjct: 853 IETAEQLAFLRRHRCDVGQGYLFDRPIPGSELIAKLK-RYP 892 >gi|83649309|ref|YP_437744.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83637352|gb|ABC33319.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 832 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 121/480 (25%), Positives = 234/480 (48%), Gaps = 24/480 (5%) Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + G++ R + + + + A+ D+LTG+ NR +F L + +A Sbjct: 354 RDEIGELARAFKSMD--GNLRATASKLTFIAYHDSLTGLANRHTFGAFLHRAIAEAARH- 410 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA------------ 610 + R ++ IDID +K +ND LG GD VL +++R+ +L+ D++A Sbjct: 411 HFRLGLLYIDIDGFKDVNDSLGHEAGDLVLKEISQRLHNVLRAEDMVADMSAQYEAMEAT 470 Query: 611 ---RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 R+ G+ F I++ ++ + I+ + ++ P + + AS+G A + Sbjct: 471 KMSRIGGDEFAIVVNHLHSPMDISHIVKRLLDAMQAPFQIESHSFLLGASVGIAVYPEDG 530 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725 + E+LK A++AMYH+K +G N E F ++ +R I D+ A++ + L Y Sbjct: 531 KDAHELLKCADIAMYHSKRQGRNGFEYFDTKMNHMAVERHQIISDIRSALQKGQFELYYQ 590 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + + ++G EAL++W HP+ G +S EF+ IAEE I I ++LE R W Sbjct: 591 PQVSALAGNVMGCEALLRWRHPERGFVSPVEFIPIAEETGQIIEIGRWVLEEACRQCREW 650 Query: 786 RDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 + Q I + +NI++ + ++ + ++ + P + L +E+ +M + + Sbjct: 651 QAQGLDE-IRMSVNISAVQFSSSTDIVAVTREALAHSGLPPDCLDLEITETAMMQSDKVG 709 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSI 902 L L+ +G+S+++DDFGT S L+ L +P D +K + S + AI+++I Sbjct: 710 VDKLNALKNLGVSISMDDFGTGYSSLASLRDLPIDQLKIDKSFVDKINHDSQGRAIIKAI 769 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 + +AK + ++A+ + + L+ CD IQ +VA PL + + L++ + + Sbjct: 770 LALAKELSIEVVAEGVEERTQLDFLSLHRCDLIQGYYVAKPLPADGMRDFLRQHTQVESS 829 >gi|75761278|ref|ZP_00741259.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895603|ref|YP_002444014.1| sensory box/GGDEF family protein [Bacillus cereus G9842] gi|228899232|ref|ZP_04063497.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] gi|228963634|ref|ZP_04124782.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] gi|74491237|gb|EAO54472.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542358|gb|ACK94752.1| sensory box/GGDEF family protein [Bacillus cereus G9842] gi|228796054|gb|EEM43514.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str. T04001] gi|228860411|gb|EEN04806.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222] Length = 689 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 122/550 (22%), Positives = 251/550 (45%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + + R ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 LFKGALQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L S + ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFLKES-----INFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A + K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KECVEEIAKGILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AYLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|77361530|ref|YP_341105.1| sensory box protein [Pseudoalteromonas haloplanktis TAC125] gi|76876441|emb|CAI87663.1| putative Sensory box protein [Pseudoalteromonas haloplanktis TAC125] Length = 1501 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 128/565 (22%), Positives = 251/565 (44%), Gaps = 16/565 (2%) Query: 397 SQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-LP 454 + +F + R + A + D V+ D + + + T + + N + Sbjct: 938 REMVFEEHARLFAAAFEQTRDWVFILDKNFNIRASNKSLQTAFNFPAEPRSSRVLNLGIS 997 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D L+ E V +N+ ++++I ++++ + Y+ Sbjct: 998 RSSRFDYLRIMQKLNV-----GEHFSCEDTVTLVNNEQRHVLVKISAVADNEHRLTSYVV 1052 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DI QK + + A D LT +PNR F DR+ ++ + N + ++ I+I Sbjct: 1053 ILTDINAQKLAENELHILANYDQLTSLPNRALFNDRVIHAIEQAQRH-NSKVALLHINIK 1111 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K ND LG V D+++ ++ R+ L+ D +AR G+ F +++ ++ Sbjct: 1112 RFKHFNDSLGREVADELIKTVAERLKSTLRPSDSVARFGGDEFVVLVEDIQQIEEVLLVC 1171 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHV 692 + + I L + I + SIG A++ ++LK A +A+YHAK G Sbjct: 1172 TKLMGCVNKNIALNGQVININLSIGVATYPDDAQQYKDLLKAANIALYHAKDNLEGSYKF 1231 Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 ++ + ++ L A + E Y PII ++ G E L++W PK + Sbjct: 1232 YKQEMNQRVQKALHLESQLTKAYQEHEFCNYYQPIISANSQKTEGFEVLLRW--PKNQLV 1289 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 ++ EF L AE + +I I L L R ++++WR A +++ IN+++ D L Sbjct: 1290 NTQEFSLAAESIGLITKIMLQTLGRALEELVAWRKIAPE--LYLSINLSALDFEFEHLVP 1347 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ + K I +ES++M + +++ + L+++G L +DDFGT + L+Y Sbjct: 1348 EIKKALIKAAIPSKAIVFEITESILMRDSKQALSSMDMLKQLGCRLYMDDFGTGYASLTY 1407 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + S + AI++S + +A ++ +A+ I + L + Sbjct: 1408 LKRFPIDVLKIDRSFVQDIGVDSNDEAIIQSTLTLAHSLNKECVAEGIESTHQLVFLKAL 1467 Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955 GCDY Q + P+ N+++ L+ Sbjct: 1468 GCDYFQGYLFSKPVPTNAVIPLITR 1492 Score = 99.6 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 5/175 (2%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 R ++ AL+ +++ ++ IQ +L + R LA+ GS V Sbjct: 781 LWRAPYFVVLYALLLIALVVAWVMRRNKIQRIL--LAAHKESKESEARLKLALEGSESGV 838 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 WDW + P + LG + + + ++L IH DR FR F+ +G Sbjct: 839 WDWQSSSLSIYQ-PRLINELGYSVECV--NLDDYLVKIHPQDRPLFRLEWLEFLSTDKGS 895 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 +R+R A + W + + N + G ++T + E A Sbjct: 896 FNCTYRLRHAKGHWRWYKDFGKVVEWHNKLPQKVAGTYTNMTREMVFEEHARLFA 950 >gi|229095198|ref|ZP_04226190.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] gi|228688057|gb|EEL41943.1| Sensory box/GGDEF [Bacillus cereus Rock3-29] Length = 689 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 116/550 (21%), Positives = 245/550 (44%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNNFIFNFII--KEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKEALQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++N ++ +D+D++ IND G Sbjct: 265 MKTEYLAYYDQLTGLMNRISCTNKLNEFL-----NENKELALVFMDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A + + I+ Sbjct: 320 EGDKVLQKVTECLSNLEIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKNILEKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ SIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSVSIGIVMAPTDGADEKILFQRVDAALEKAKEKGKGHYHFYCKGLDCEREKR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +++ L A+E +E +L Y P + + ++I +EALI+W++ + G + ++F+ +AE Sbjct: 439 FVMENQLHRAIEKNEFFLYYQPQVNIETKKIASMEALIRWENKELGFVPPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ ++++++ + I W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVDQVCQQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L + +Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVEIVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDVENM 686 >gi|148545617|ref|YP_001265719.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148509675|gb|ABQ76535.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida F1] Length = 926 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 146/581 (25%), Positives = 261/581 (44%), Gaps = 43/581 (7%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + P I ++ + G LP + Sbjct: 365 RRAAASALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPAL 424 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L Q EF+ R + + +W + I + N ++ YIG Sbjct: 425 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 479 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I D+T+ K + + I A+ DNLT + NR +F+ L A D ++++DID Sbjct: 480 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGESSMCLLLVDID 536 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L ILAR + N F ++L + A Sbjct: 537 NFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLL-DHTSLEDGQGVA 595 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P+ + + I VTAS+G A + + ++KNA LA++ AK G + V+ Sbjct: 596 QQLLCTLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQV 655 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++GLEAL++W+HP+ G I Sbjct: 656 FTEVLNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 715 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I +++ + + +A + + + IN++ K D +L Sbjct: 716 RPDQFISVAEETGLIIPIGKWVVRQAC-CMSQQLRKAGLGNLHVAINLSPKQFSDPDLVA 774 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859 + ++ + E++ E + L L+ +G++L Sbjct: 775 SISTILKE-------------EALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLA 821 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S + + + I +++ MA N++ ++A+ Sbjct: 822 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 881 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I + L R CD Q P+ + + LK R+P Sbjct: 882 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 921 >gi|324324584|gb|ADY19844.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 689 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 122/549 (22%), Positives = 247/549 (44%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T+L +DN ++ ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNTLL-----NDNTEFALVFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ + + K I+ Sbjct: 320 EGDKVLQKVTECLSSFEIAGMHLFREHDDQFVMLIENIT-KERVEGVSKNILKRISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|254459349|ref|ZP_05072770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Campylobacterales bacterium GD 1] gi|207083962|gb|EDZ61253.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Campylobacterales bacterium GD 1] Length = 899 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 139/598 (23%), Positives = 276/598 (46%), Gaps = 16/598 (2%) Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 + + L I I+ + + + + A + + + D+ Sbjct: 307 SLHSLYITIFLWSISIIALIFLTYILKRLITKEEKYIQELRIAGYAFD-AQEAMVITDLS 365 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 V I + G L H+ND ++ + + + G+ + E Sbjct: 366 GTIVKVNKAFTDITMYEASEAIGKNPKILKS-HLNDDKFYKAMWNEIIS--FGKWKGEIF 422 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 + + + + I+ I + N + YI DIT KK+ E A D LTG+ NR Sbjct: 423 NKRKNGEIYPEILSITAIKNEDNKTTNYIAQFTDITSIKKAQEDAQYQANHDFLTGLLNR 482 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 S +++L + N + IDID +KKIND G +GD ++V +++R+ +L+ Sbjct: 483 NSLIEKLHEEFIKAKRH-NFTHAFLYIDIDDFKKINDQYGHNIGDMLIVEVSQRLKHILR 541 Query: 605 FPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIG 659 D++AR+SG+ FGI+L++ + I + KSI+ + E +I ++ SIG Sbjct: 542 EDDVIARISGDEFGIMLLNFDKENSDIAKCIKGICTKILKSISESFLIYEHKIDISLSIG 601 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVEN 717 + ++ E++ +A+ AM +K +G N F ++ + + +++++ A++N Sbjct: 602 IKLFPDNEELKDEVIIHADTAMNQSKAQGKNQYVFFDRQIDNELKKYIALEKEIKNALKN 661 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 +E + P + + E+I G E LI+W HP G + F+ +A+E+ +I I L++ Sbjct: 662 NEFKFYFQPKVNVKTEKIDGAEILIRWLHPDKGLLYPGSFLDVAQEIGVIPDITSLALKK 721 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 + S + + I INI+S++LL + E + + I PS+I+L +E+ + Sbjct: 722 ACEFLKSSTEIFDGA---IAINISSEELLKADFEENIISTILHYKVDPSKIELEITENDI 778 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRI 896 + + + + + + L+K+G+ ++DDFGT S ++YL +P +T+K + + + Sbjct: 779 IKDFDLAIIKIKNLQKLGVKFSIDDFGTGYSSITYLQKLPVNTLKIDKCFFDNLSLDSNK 838 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +++ +I MAK II++ I ++ + G D Q + + + S LLK Sbjct: 839 ELVKIVINMAKTFNMNIISEGIESNEQLEFIKECGSDQYQGFYFSKAIDEESFNTLLK 896 >gi|158333716|ref|YP_001514888.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina MBIC11017] gi|158303957|gb|ABW25574.1| diguanylate cyclase/phosphodiesterase, putative [Acaryochloris marina MBIC11017] Length = 886 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 126/454 (27%), Positives = 241/454 (53%), Gaps = 5/454 (1%) Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + ++ E++++ E A D LTG PNR F+++L + + V+ ID Sbjct: 431 LALTKEVAERQRAEEQFKHLALHDPLTGFPNRAFFMEQLERAVKQTQRHSQYLFAVLFID 490 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D++K +ND LG VGD +L ++ ++ L++ DI+ARL G+ F I+L Sbjct: 491 LDRFKIVNDSLGHEVGDQLLGAIAHQLHSLVRATDIVARLGGDEFVILLEPIEEVNDAVR 550 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + + ++ PI+L R++ ++AS+G A + ++++L++A++AMY AK+RG Sbjct: 551 VADRIVQELSAPIDLSNRQVFISASVGIALSSPDYSQATDILRDADIAMYRAKNRGKACF 610 Query: 693 ESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 E F DR+ ++ DL A+ N +L + Y PI+ + ++ G EAL +W HP+ G Sbjct: 611 EIFNERMYTQALDRLQLENDLRQAIANQQLQVFYQPIVNIQTGKLSGFEALGRWPHPQRG 670 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNE 809 I +EF+ IAEE +I + ++L+ + + +W I +N++ K L D Sbjct: 671 FIPPTEFIPIAEETGLIIPLGEWILQSACQQMATWLQTYPSAVKYTISVNMSIKQLKDPN 730 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 L + + ++ + ++ L +ES++M N +++L +L++ GI L++DDFGT S Sbjct: 731 LLTKVDRALEQSGLNRHQLSLELTESILMENVIELKVILNQLKERGIQLSIDDFGTGYSS 790 Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LSYL PF+T+K + S +T + I+ +II +A + I++ + + + L Sbjct: 791 LSYLHLFPFNTIKIDQSFITRIGAQGENQEIIETIINLASQLNMDAISEGVESKQQLNYL 850 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 ++ C Q ++ + PL ++ + L++ Sbjct: 851 KKLLCQKAQGNYFSQPLSSDAAEVFILNNPQLIQ 884 >gi|118476237|ref|YP_893388.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] gi|118415462|gb|ABK83881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus thuringiensis str. Al Hakam] Length = 689 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 123/549 (22%), Positives = 249/549 (45%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ NG+I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ FA +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K S Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSH 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|262401649|ref|ZP_06078215.1| hypothetical protein VOA_003199 [Vibrio sp. RC586] gi|262352066|gb|EEZ01196.1| hypothetical protein VOA_003199 [Vibrio sp. RC586] Length = 684 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 136/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG + Sbjct: 125 LVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFENSQKLLGENFSRL 182 Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +I + F + L S + + R +E +V+ + + + + Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKVQLHAGSTLMLGNQSQLIL----- 237 Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 D E K+ +A DNLTG+ NR F RL + + Sbjct: 238 -------LQDADEAPKQLSATTQVDAHIDNLTGLYNRHGFTKRLEQCI-----QNETPLV 285 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID +K IND LG +GD V+ + R+ LL IL L G+ FG+IL ++ Sbjct: 286 LLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAILGHLGGDEFGLILPEPEHN 345 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + I P +L + SIG + + +L+NA+ AMY AK R Sbjct: 346 RSEEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++W Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + ++ L+ T PS I +ES VM + E ++ +L ++K+G +L++DDFGT Sbjct: 525 GNPQLIDYLEKLLRATGVDPSCITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|26988492|ref|NP_743917.1| sensory box protein/GGDEF family protein [Pseudomonas putida KT2440] gi|24983256|gb|AAN67381.1|AE016364_6 sensory box protein/GGDEF family protein [Pseudomonas putida KT2440] Length = 973 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 130/625 (20%), Positives = 254/625 (40%), Gaps = 25/625 (4%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSLAVLGS 414 +++ L+ L+ + LI + + F+ + + ER + + Sbjct: 350 ALGEGSRMLLRVLLITNLLTAMFLIAIAWRRSSKLLAQRQAFASALQEEKERAQITLQAI 409 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHINDRDNFRTILD 469 GD V D+ + P + SG G + L + + R +L Sbjct: 410 GDAVITTDVEGNIGYMNPAAEQLTHWQSGQAQGLPLSALFSLVDEHAEEDGRSLVEQVLS 469 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + R+ D + + P+ N +G + + + +D+T++++ + + Sbjct: 470 GSLKGGSEHARLIQRL---DGSTVSINLVGSPILN-DGQVSGIVLVLHDMTQERQYIANL 525 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+ NR+ F RL L+ A R ++M +D+D++K +ND G A GD Sbjct: 526 SWQATHDALTGLANRREFEYRLEQALNDLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGD 584 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648 ++L + + L+ D LARL G+ FG++L + + +R+ + Sbjct: 585 ELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCP-PDQAERIGEQLRQMVQSLHFVWK 643 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDR 704 R T SIG + T L+ A++A Y AK +G N V+ + R Sbjct: 644 GRPFVTTVSIGLVHMAQAPGTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGE 703 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + + L +A+E + L I L E +E L++ I S F+ AE Sbjct: 704 MAWIQRLHVALEENRFCLYAQEIAPLKTFEGPGHIEILLRLHDESGRTILPSSFIPAAER 763 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTL 822 ++ A++ +++ + I ++ P+ IN++ + D++ E +Q L + Sbjct: 764 YGLMTALDRWVVRNVFMVIRKCLEEGREGPLSTCAINLSGSSIGDDKFLEYLQRLFVEYA 823 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P I +E+ + N + + L+ +G +LDDF S +YL ++P D +K Sbjct: 824 IPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLK 883 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 +GS + A++ I + + IA+ + + + L +G DY Q + Sbjct: 884 IDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLI 943 Query: 941 ASPL--GFNSILKLLKERFPLVKNT 963 P +S+ + PL++ Sbjct: 944 ERPQVFTCDSLQRQRIAARPLLQRA 968 >gi|153870656|ref|ZP_02000010.1| sensory box/GGDEF family protein [Beggiatoa sp. PS] gi|152072877|gb|EDN69989.1| sensory box/GGDEF family protein [Beggiatoa sp. PS] Length = 439 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 121/439 (27%), Positives = 232/439 (52%), Gaps = 7/439 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 +T +K++ + + A+ D+LTG+PNR F +R+ + + + ++ V+ D+D +K Sbjct: 1 MTARKQTEQRLAYLAYYDDLTGLPNRTLFYERVNRAIYHARQNLSM-VAVIFFDLDGFKY 59 Query: 579 INDVLGIAVGDDVLVSLTRRIGEL-LKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND G +GD +L + +R+ + L D +ARL G+ F ++L + N+ I FA + Sbjct: 60 VNDTWGHPIGDLLLKKVAKRLMQCTLCQSDAMARLGGDDFTMVLENINSPKLIEQFAHNI 119 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + + P +L E +TASIG + + + +LK A+ A+YHAK G N+ + F Sbjct: 120 LEVVQPPFDLNGHETFITASIGISLYPNDGKEVDTLLKQADAALYHAKESGKNNYQFFTP 179 Query: 698 SS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 +R++++ L A+E E L Y P + L +I+G E L++W HP+ G +S Sbjct: 180 QMKKHAHNRLIMESKLRRALEREEFVLYYQPQMHLASGQIIGAEVLLRWQHPEMGLVSPY 239 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I I ++L W+ + + + +N++S+ + L + + Sbjct: 240 RFIPLAEETGLIVPIGEWVLHHTCLQQQHWQCH-SQSKLRLSVNLSSRQFQQDNLIKTVV 298 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 ++ +T + + L +ES+++ N + + +L + +++GI L +DDFGT S LSYL Sbjct: 299 RILDETCMDATLLTLELTESLLIQNIDITNKILHQFKEMGIQLAIDDFGTGYSSLSYLKR 358 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P D +K + S + + + I ++II +A N++ T++A+ + E + L + CD Sbjct: 359 FPIDKLKIDQSFVRDIPDNKDDVNITKAIIALAHNLQMTVVAEGVEKETQLILLKSLQCD 418 Query: 934 YIQDSHVASPLGFNSILKL 952 IQ ++ P+ L + Sbjct: 419 EIQGYLISRPVPEEEFLNM 437 >gi|152986044|ref|YP_001350002.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7] gi|150961202|gb|ABR83227.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7] Length = 818 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 123/585 (21%), Positives = 240/585 (41%), Gaps = 14/585 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++++L Q ++ + ++ ER + + GD V D P Sbjct: 215 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTEGGISYLNPA 274 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490 + G P+ + + + R+ +++ + GR + +R D Sbjct: 275 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 333 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + P+ G+I + + +D+T +++ + + A D LTG+ NR+ F R Sbjct: 334 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 392 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L+ + R +M +D+D++K +ND G A GD++L + + + L+ D LA Sbjct: 393 LQMALERLERSNG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 451 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ FGI+L + + + + + T S+G T Sbjct: 452 RLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 511 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726 E L++A++A Y AK +G N V+ F R + + + LA+E L P Sbjct: 512 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 571 Query: 727 IIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 I+ D E +E L++ + F+ AE ++ I+ +++E R + Sbjct: 572 IVPLGEDGEGPHVELLLRLRDEDGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLAER 631 Query: 786 RDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 + + PI IN++ + D + + ++ P I +E+V + N + Sbjct: 632 AEDPDAEPIGTCAINLSGATIGDESFLQFLNEQFARYRIPPQSICFEVTETVAVANLASA 691 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902 + L+ G +LDDF S YL ++P D +K +GS + A+++ I Sbjct: 692 IRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQVI 751 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 + + IA+ + ++ L +G DY Q + +PL F+ Sbjct: 752 NHIGHVMGKRTIAEFVETAEVMEALREIGIDYAQGLAIGAPLPFS 796 >gi|254519482|ref|ZP_05131538.1| diguanylate cyclase/phosphodiesterase [Clostridium sp. 7_2_43FAA] gi|226913231|gb|EEH98432.1| diguanylate cyclase/phosphodiesterase [Clostridium sp. 7_2_43FAA] Length = 578 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 130/525 (24%), Positives = 256/525 (48%), Gaps = 12/525 (2%) Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 I G + + Y R ++ IL+ + + E ++ W Sbjct: 62 KEITGYKEDFIIMTFDEFRSYF----RQDYFDILNDGIKNNLEEI--EVKITNILGVDIW 115 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + ++ + ++ G+ L + G ++IT++K++ + ++ D LTG+ NR+ F + + Sbjct: 116 ISVKGQARKSNKGEFLGFEGYVHNITKEKEAHLKLEYISYYDELTGLNNRKQFKNIIEKE 175 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L+ ++ R +++IDID +K IND G GD +L + + ++ +L R G Sbjct: 176 LEKHIVSES-RGALIIIDIDNFKFINDSYGHKCGDILLEKFSEDLKKIFNDDQLLCRFGG 234 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F I + S + +I + + P ++ +I + SIG + + +L Sbjct: 235 DEFLIFISSISYLNEINTTVRKIMDILKNPYDINGHKIYSSTSIGVSVFPDDGEDFEVLL 294 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMD 732 KNA+ AMY AK G N + F + R I+ L A++N E+++V+ P +RL D Sbjct: 295 KNADAAMYIAKSNGKNQWQMFNNNISREINRIYSIQRGLRTALDNDEMFVVFQPKVRLTD 354 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 +E+ G EAL++W + G +S EF+ +AE +I I F+L + + + Sbjct: 355 DEVNGFEALLRWKSNEIGFVSPGEFIPVAENTRLIIPIGKFVLREVFAKVKYLLSEGYD- 413 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I +N++ L D L E +LI + SP I++ +ES++M + +++ L +++ Sbjct: 414 NFKIAVNLSEIQLRDGNLLEYFNSLIEEFNVSPKYIEVEITESMIMKSVDKNIECLLQIK 473 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910 ++G S+ LDDFGT S L++L +P D +K + S + E + I+ +II ++ + Sbjct: 474 ELGASIALDDFGTGYSSLNHLTKLPIDVLKIDRSFVIDMAENDKSRYIVENIIQLSHKLG 533 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 T++A+ + + + L + CD +Q + + P F +I+ +L + Sbjct: 534 MTVVAEGVEEKEQVDYLRSIECDTVQGFYYSKPEYFENIISMLSK 578 >gi|47567108|ref|ZP_00237824.1| sensory box protein/GGDEF domain protein [Bacillus cereus G9241] gi|47556164|gb|EAL14499.1| sensory box protein/GGDEF domain protein [Bacillus cereus G9241] Length = 689 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 118/549 (21%), Positives = 242/549 (44%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ + +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYKKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKRSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNDFL-----NEKIDFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ A +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPGMHLFREHDDQFVMLIENIT-KERVEVVAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 + E ++ ++ASIG + + + A+ AK +G H + Sbjct: 379 IEEEDVYLSASIGIVMAPRDGEDEKILFQRVDAALEKAKDKGKGHYHFYCSGLDSEREQR 438 Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 I+ L A+E +E +L Y P I + ++I +EALI+W++ + G + ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLHYQPQINIETKKIASMEALIRWENKELGFVPPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K S Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A + +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLGLNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|307304289|ref|ZP_07584041.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sinorhizobium meliloti BL225C] gi|306902757|gb|EFN33350.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Sinorhizobium meliloti BL225C] Length = 772 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 127/441 (28%), Positives = 223/441 (50%), Gaps = 7/441 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ + I A D LTG+PNR F +++ +L+ D + +D+D +K IN Sbjct: 332 ERKRAEDRIGFMAHHDALTGLPNRVLFEEQVAGMLEEIRERDQW-AVLAFLDLDDFKLIN 390 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639 D LG A GD++L + R+ ++ D + R+ G+ F I+L + +R Sbjct: 391 DSLGHATGDELLKIVAGRMRAAVRRSDSVVRVGGDEFIILLNGLPKERDVVLSRLEDIRT 450 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +IAMP+ L R + V+ S+G A + + T+ E+L NA++AMY AK G N+++ F Sbjct: 451 AIAMPVQLQGRSLQVSCSMGVACFPNQGKTAGELLANADMAMYRAKELGRNNIQVFTEEM 510 Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 +++ +E+L A+ E L + P + L I EAL++W HP G IS + F Sbjct: 511 AARAHEKLQSQEELREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAF 570 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I I ++L R + +W+D PP+ + +N++++ + + A+ Sbjct: 571 IPLAEETGLIVPIGDWVLRTACRQLKAWQDAGL-PPLIVSVNVSARQFRERNWAARVAAV 629 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T ++L +ES++M + + + L IG+ L +DDFGT S LS L P Sbjct: 630 LEETCLEARYLELELTESLIMQDVPGAIATMQALEAIGVHLAIDDFGTGYSSLSALKRFP 689 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S +T +AI +II +A+ + +IA+ + E ++ L + GC I Sbjct: 690 VRRLKIDRSFVTDIPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEI 749 Query: 936 QDSHVASPLGFNSILKLLKER 956 Q + PL LL Sbjct: 750 QGYFFSQPLPGEDFEVLLSSE 770 Score = 47.3 bits (111), Expect = 0.014, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 456 IHI-NDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYI 513 +H + E R + D W++ P+ + +G I+ + Sbjct: 100 LHPHEFAQAVADTERRVLETGEPIFGIEERAIVTKDRD-RWLMTSKVPLRSKSGRIIGIV 158 Query: 514 GIANDITEQKKSLEGILCNAF 534 GI+ DI+++K + + A Sbjct: 159 GISRDISDRKAAERLLEGQAR 179 >gi|229108154|ref|ZP_04237777.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] gi|228675284|gb|EEL30505.1| Sensory box/GGDEF [Bacillus cereus Rock1-15] Length = 689 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K S Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E IIA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|323488321|ref|ZP_08093569.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] gi|323397979|gb|EGA90777.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis MPA1U2] Length = 758 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 118/437 (27%), Positives = 228/437 (52%), Gaps = 6/437 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + +K + + A+ D L+G+PNR+ FL++L + + + V+ ID+D++K +N Sbjct: 313 QLEKVIRKMEELAYYDVLSGLPNRRLFLEKLEDSIRDAKQHSE-KVAVVFIDLDRFKNVN 371 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G GD +L + +I E L+ D+++R G+ F IIL + + I+ ++ + Sbjct: 372 DSFGHEFGDLLLQGFSEKIKENLRSDDVISRQGGDEFTIILNNIYDEHDISPLIQRLQTA 431 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +A P+ + +E+ ++ SIG A + T+ E+LK+A+ AMY AK +G N+ + F Sbjct: 432 LAKPMMINGQELHISMSIGIAVYPKDGETTGELLKHADSAMYSAKAKGKNNFQFFSDDMA 491 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 S ++ ++ ++ A+ N E L Y P I++ +I+G+EALI+W +S EF+ Sbjct: 492 LIASRKIALENEMRRAITNKEFMLYYQPQIQVETGDIIGMEALIRWQTAGGDVVSPGEFI 551 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I I ++L W D + I +N++ L ++L + ++ + Sbjct: 552 PLAEETRLILPIGEWVLYSACEQAKKWHDA-GHSHLKIAVNLSPLQFLHDDLMDVVKFTL 610 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 KT + S ++L +E V + + E + + LR+IG+ + +DDFGT S L+YL P Sbjct: 611 RKTGFPASSLELEITEGVAVDDAEIAMARMRELREIGVRIAIDDFGTGYSSLNYLKQFPL 670 Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 + +K + A++ +++ +A ++ ++IA+ + + + L +GCD IQ Sbjct: 671 NNLKIAQPFVQDMANNPYDKALVEAMVFIAHSLNMSVIAEGVETDEQLALLKELGCDEIQ 730 Query: 937 DSHVASPLGFNSILKLL 953 + PL +L+ Sbjct: 731 GYLYSKPLSAAQFTELI 747 >gi|285018220|ref|YP_003375931.1| hypothetical protein XALc_1436 [Xanthomonas albilineans GPE PC73] gi|283473438|emb|CBA15943.1| hypothetical protein XALc_1436 [Xanthomonas albilineans] Length = 943 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 136/542 (25%), Positives = 241/542 (44%), Gaps = 10/542 (1%) Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + ++ R+ T + I GL ++ + L + RD F L V Sbjct: 393 EIEVSTRRMQWTEECYRIHGLRKETIE--LDQALSLYTQDSRDAFEAALARIVEGSLPE- 449 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 Q + Q W+ + I + +G R++ + DIT ++++ E I A D LT Sbjct: 450 QLDLCFHRPSGQRIWVQVLIE-LDERDGLPPRFVVLFRDITHEREANERIELLAHYDLLT 508 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNRQ ++ + + + ++ +++D +K IND G A GD +L R+ Sbjct: 509 GLPNRQLLREQSEKAMHDAIERGST-LAMLFVNLDGFKSINDSFGHAAGDALLKLAASRM 567 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 + L+ D+LARLSG+ F ++L A + ++A P+ E I + ASIG Sbjct: 568 HQQLRTSDLLARLSGDEFVLVLRDLAEPGDAGHVARKLITALAEPLPNGENVIKIGASIG 627 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN 717 A + +L+ A+ AMY AK G N + R+ I+ L A++ Sbjct: 628 IALMEEGRQDFDSLLRAADAAMYAAKESGRNACHYYSQDVLLRAQRRLEIEHALHGALDR 687 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E LVY P++ ++ +EAL++W P G+ + +EF+ IAEE I + +++ Sbjct: 688 EEFSLVYQPLVHTVEGHPPAIEALLRWYRPGHGHCNPAEFIPIAEECGEIVRLGDWVISE 747 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R +W + I +N+++ L D E + L + +SP R++L +ES + Sbjct: 748 ACRQAAAWHEAGLSFD-RISVNVSAMQLRDRGFAERVIELCQRNGWSPKRLELELTESAL 806 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895 + + E R + GI L +DDFGT S L YL P +K + S + Sbjct: 807 IRDSESLRRCFELFEQEGILLAVDDFGTGFSNLHYLNRFPVQRLKIDRSFVQDMLHDSGT 866 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++I+ + + ++A+ + + + L GCD IQ + PL + L+ Sbjct: 867 AKVTQAIVQLGHALGMQVVAEGVETVQEDELLREQGCDEIQGYLHSRPLPPRELAAWLRA 926 Query: 956 RF 957 R Sbjct: 927 RQ 928 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R +A+ + +WDWDI D++ + +LG A + LP +H D++ + Sbjct: 122 RWEIALDSADHGLWDWDIPSDKIFRSERWKQMLGYAGDAPVHGFNGLLPLVHGQDKERLQ 181 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524 + + R EFR+R D Q+HW++ R R + ++G LR +G DI EQK Sbjct: 182 QAIRAHFEGRTATYMCEFRLRGQDGQWHWILDRGRIVARTADGRPLRMVGTHTDIHEQKL 241 Query: 525 SLEGILCN 532 + +L Sbjct: 242 LEQRLLDQ 249 Score = 66.9 bits (162), Expect = 2e-08, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 8/149 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 Q + A +G W WD D+ + + + GL R WL Sbjct: 242 LEQRLLDQQTLLREAQRMTGMGSWSWDPRHDQFWCSHEFQRVTGLN-EQQVPNSRGWLRL 300 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + + +I + ++ + ++ + + + +P +G I R +G Sbjct: 301 LSRDSSAQLVSIWRRMLSDKK-PVNFDVELPFGSQAPLHLRVWAQPQLEGDGTIQRVLGQ 359 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNR 544 +ITEQ+++ I T + NR Sbjct: 360 VQNITEQRQTDALIRWR------TELLNR 382 >gi|254414802|ref|ZP_05028566.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178291|gb|EDX73291.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Microcoleus chthonoplastes PCC 7420] Length = 884 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 147/554 (26%), Positives = 265/554 (47%), Gaps = 40/554 (7%) Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YR 475 + + D+ P+ +L + H F + S + + Sbjct: 323 IVEIDLAGRVRYLNPEAMRLL---PELLDSEAE------HP-----FLAEMPSMIRLMQQ 368 Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 + L+ E ++ + + + + +I A DIT++K++ E +L NAF Sbjct: 369 QSSLRREVKI----GEIVYEQ-----VLHYVPEIECIRIYALDITDRKRAEELLLFNAFY 419 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDN-------LRPTVMVIDIDKYKKINDVLGIAVG 588 D LTG+ NR F+DRL + R V++++++++K +N+ LG +G Sbjct: 420 DRLTGLANRALFMDRLQQAGRRAQPSQGENRDSPSYRFAVVLLNLNRFKVVNESLGNHLG 479 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D VL +R+ L+ D +ARL G+ F I+L A A+ +++ +P NL Sbjct: 480 DQVLQEFGQRLQNCLRPTDTVARLGGDEFAILLEGIQGVCDAIQVADAIEQTLTLPFNLE 539 Query: 649 EREITVTASIGFASWTSSKI---TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--D 703 R++ +T SIG A T+ ++ +L+NA AM+ A+ +G F D Sbjct: 540 GRDVFMTTSIGIALNTNRDRQVLSAENILRNANTAMHRARSQGKPGYAIFDNQMLSPTVD 599 Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 R+ ++ D+ A+E E + Y PI+ L+ +I G EAL++W HP+ G + +EF+ IAEE Sbjct: 600 RLQLETDMRRAIERQEFQVHYQPIVSLLTHQITGFEALLRWQHPQRGLVFPAEFIPIAEE 659 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTL 822 +I + ++L R + W+ Q P P+ + +N++ K +L + ++ +T Sbjct: 660 TGLIIPMGWWILREACRQLSIWQQQFQSPQPLTMNVNLSCKQFTQPDLLAQIDQILEETN 719 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + +KL +ESVV+ NPE + LL L+K I L +DDFGT S LS L P T+K Sbjct: 720 IAVGSLKLEITESVVIDNPELVKDLLLELKKRQIHLCIDDFGTGYSSLSRLHNFPISTLK 779 Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S ++ + I+++II +A+ + ++A+ I + L + C Y Q Sbjct: 780 IDRSFISRIGALGENSEIVQAIITLARTMSMDVVAEGIELLEQVSPLVALQCHYGQGFLF 839 Query: 941 ASPLGFNSILKLLK 954 + P+ + +KLL+ Sbjct: 840 SKPVDSDGAIKLLR 853 Score = 54.6 bits (130), Expect = 8e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 5/156 (3%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449 V+ ++ + E V G D P + LG + G Sbjct: 169 VMERQQLTEQLHQQQEFNQNLVETHGGFFVAIDPQGKTRMMNPRLLETLGYTLDEVRGT- 227 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNG 507 +I DR F ++ + + + V + Q W+ R + + +G Sbjct: 228 DFVTKFIRDVDRKPFAKLIKTREEKSELKSPTVHQTGVLTKEGQELWVEWRSQQVFKKSG 287 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 ++ I D E + + A LT PN Sbjct: 288 ELDFLFAIGRDQNEHCLTHQETARLASFPLLT--PN 321 >gi|192293007|ref|YP_001993612.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] gi|192286756|gb|ACF03137.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] Length = 876 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 139/568 (24%), Positives = 259/568 (45%), Gaps = 33/568 (5%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 +L V + D + + GL +G + Sbjct: 326 ALTVQNTADGRYMLANRGAEIILNRRREDATGLTTGEIFNAKE-----------ARLIAE 374 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 D + G + E + A + R +++ I D+T+++++ Sbjct: 375 RDELAIRKGGLVVEEHPISTA-GGLRLFVTRRMTVTDEADQAHYLIKTHVDVTDRRQTEA 433 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A+ D LT +PNR +FL LT +++ + + V+ +D+D K+INDV G A+ Sbjct: 434 RMAHMAYHDGLTDLPNRDAFLKSLTQMIE-ACDNAVDEFAVLSVDLDGLKEINDVFGHAI 492 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L+ + RRI E ++ARLSG+ FG+I+ D A + K++A + Sbjct: 493 GDKLLIEVARRI-EWASRGGVVARLSGDEFGLIIDGPQ-PAAARDLASMVAKALAPGFVI 550 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705 + + + + G A + ++ ++ +L NA A++ AK RG V + DR Sbjct: 551 DGKTVRIGVTTGVALFPANGTDAASLLANAGAALFRAKAKARGSVTVFEPEMDMQIRDRR 610 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLM----DEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++ +DL A+ N E+ L Y P + +IVG EAL +W HP G + SEF+ +A Sbjct: 611 VLHQDLSNAIRNGEMSLYYQPQASSTKRVGNNDIVGFEALTRWRHPTRGFVPPSEFIPLA 670 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I + ++L R SW P+ + +N++ L+ +L + ++ +T Sbjct: 671 EESGLIVELGEWILREACRQAASWAR-----PLQVAVNLSPAQFLNTDLVAFVHEVLLQT 725 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P R++L +E V++ + +R LL RL+ +G+ +++DDFG+ S L+YL PFD + Sbjct: 726 GLEPGRLELEITEGVLIEDFDRGLSLLRRLKALGVRVSMDDFGSGYSSLTYLQAFPFDKI 785 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + + AI+R++I + + T++A+ + + + L CD +Q Sbjct: 786 KIDRAFIMNLGRNPQSAAIVRAVIGLGHGLGVTLVAEGVETQDQLDFLVDESCDAVQGYL 845 Query: 940 VASPLGFNSILKL-----LKERFPLVKN 962 + P + L L++R P Sbjct: 846 IGKPAPIDQYRWLVGLDALEDRAPARAR 873 Score = 40.3 bits (93), Expect = 1.8, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 6/136 (4%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIR 450 S+ + + + + V I + T+ GL+ + G Sbjct: 174 ELRRMSKELSTTKQFLESVIDNIPVCVAAKSIEDGRYILANRAFETLSGLSRDKIIGATA 233 Query: 451 NWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 ++ + R S + G Q E V R+ N +G+ Sbjct: 234 ---DQLYPARSAASIREADQSALQSITGAFQSELTVELGRGDRILASNRVVA-RNEHGEP 289 Query: 510 LRYIGIANDITEQKKS 525 I + D+T ++ Sbjct: 290 EFLIALFEDVTNRRAL 305 >gi|228937784|ref|ZP_04100415.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970665|ref|ZP_04131309.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977243|ref|ZP_04137640.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228782462|gb|EEM30643.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407] gi|228789058|gb|EEM36993.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821890|gb|EEM67887.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938266|gb|AEA14162.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 689 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 121/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYIHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNTFL-----NESINFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KECVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AYLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|229028342|ref|ZP_04184471.1| Sensory box/GGDEF [Bacillus cereus AH1271] gi|228732972|gb|EEL83825.1| Sensory box/GGDEF [Bacillus cereus AH1271] Length = 689 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 120/549 (21%), Positives = 245/549 (44%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHEAGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNVFL-----NEKIDFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + + L R ++F +++ + + A ++ K I+ Sbjct: 320 EGDKVLQKVTECLSSIQIGGMHLFREHDDQFVMLIENIT-KECVEVVAKSILKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYYFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + + Sbjct: 677 PLSKDDVEN 685 >gi|78778197|ref|YP_394512.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans DSM 1251] gi|78498737|gb|ABB45277.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans DSM 1251] Length = 770 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 122/444 (27%), Positives = 236/444 (53%), Gaps = 10/444 (2%) Query: 517 NDITEQKK---SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 +I QKK + + + D+LT +PN+ +DRL +++++ + + +++ +D+ Sbjct: 326 RNINLQKKVQTAANELEHLSRHDHLTNLPNKTLLIDRLEHSINVASKNGQ-KVSILFLDL 384 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K+IND VGD +L ++RR+ +L+K D + R G+ F IIL + N + + Sbjct: 385 DRFKEINDTYNHEVGDKLLQDISRRLKKLIKEEDTIGRFGGDEFIIILNNSNETQTVEVV 444 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + +++ P N+ + ++ T SIG + + + +++NA+ AMY AK G N + Sbjct: 445 TN-IMSAMSEPFNVNKVKLHTTFSIGISIFPDDGNSRDILIRNADTAMYEAKSNGKNRYQ 503 Query: 694 SFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + +R ++ +L A++N E + + P I ++++GLEALI+W+HP+ G Sbjct: 504 FYDKKMTELAFERTTLESNLRKAIQNEEFEVYFQPKIDARVDKVIGLEALIRWNHPELGL 563 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I +F+ AE + +I I+ +M+ A ++ W+ + + + IN+++K L D+ Sbjct: 564 IPPVKFIPFAENIGLIIEIDRWMMREAAAQVLLWKKENIVCG-KLSINVSAKQLEDDNYV 622 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + I+ P +++ +E ++M + L +R++GIS+++DDFGT S LS Sbjct: 623 EFLSQKINDIGIDPKDLEIEITEGLIMKHSLHVTSTLNAIRELGISISVDDFGTGYSSLS 682 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P D +K + S + + IAI+++II +A N+ +IA+ + + L Sbjct: 683 YLKRLPIDKLKIDRSFVKDLPHDKDDIAIVKTIIALANNLSLELIAEGVETKEQRDFLLS 742 Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953 GC IQ + PL N + L Sbjct: 743 EGCHNIQGYFYSKPLKVNECREFL 766 >gi|146283460|ref|YP_001173613.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501] gi|145571665|gb|ABP80771.1| GGDEF domain protein [Pseudomonas stutzeri A1501] Length = 660 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 119/451 (26%), Positives = 216/451 (47%), Gaps = 5/451 (1%) Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 I +++ ++++ + D+LTG+PNRQ +L ILD + R V+ + + Sbjct: 205 SIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQSQLDHILDEARRLQR-RVAVLCLGL 263 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K IN+ GD +L L R+ E LARL G++F ++L + A+ Sbjct: 264 DDFKGINEQYSYQAGDCLLKGLADRLRESAGRLGALARLGGDQFVLVLSGIEQPYEAAEL 323 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A A+ + PI+L I + A+IG + + ++L+ AE M AK R N + Sbjct: 324 AQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNTEKLLQKAEQTMTLAKSRSRNRYQ 383 Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + + S R +++DL A++ +E +LVY P + I G+EALI+W HP+ Sbjct: 384 FYVASIDSQMRARRELEKDLSEALKRNEFHLVYQPQVDYRQNRITGVEALIRWKHPQGKL 443 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + F+ +AE+ I I ++L++ + W Q + + +N+++ L +L Sbjct: 444 VPPDLFIPLAEQNGSIIEIGKWVLDQACSQLRQWHAQ-GHTGLRVAVNLSTVQLRHPQLP 502 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + L+ ++L +E+ +M + + + L LR+ G + +DDFGT S LS Sbjct: 503 AMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLHSLRRSGALIAIDDFGTGYSSLS 562 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 YL +P D +K + S + + I+R+II + K++ T+IA+ + L Sbjct: 563 YLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKSLGMTVIAEGVETPEQEAYLIAE 622 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 GC Q + + PL + LL++ P + Sbjct: 623 GCQEGQGYYYSKPLPARDLDLLLRQSAPFDR 653 >gi|296501307|ref|YP_003663007.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] gi|296322359|gb|ADH05287.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171] Length = 689 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K S Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E IIA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|261417194|ref|YP_003250877.1| diguanylate cyclase/phosphodiesterase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373650|gb|ACX76395.1| diguanylate cyclase/phosphodiesterase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327316|gb|ADL26517.1| sensory box/GGDEF domain/EAL domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 667 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 144/644 (22%), Positives = 285/644 (44%), Gaps = 25/644 (3%) Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT---- 393 + +F I + T+ + N I + L + + F + + Sbjct: 11 RFALLLACFLFAESIPDILNFTEHVYNFIPYFLAIVFLAYVALFYKFPMDGRKIRNDVEI 70 Query: 394 ---------GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + + E + + S D W +D+ +V + IA +L S S Sbjct: 71 PEPKVVEPIRDLRKDLLEKDEMFQMMIDVSSDGFWTFDVASGKVYWSNRIAKLLATDSAS 130 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + + +D + FR L++ + G + A + ++I R SN Sbjct: 131 LEDSFEPLKKRVIESDWNAFREQLNAAL-QTSGTFSCTLTLLDASKKNMKLVISGRVQSN 189 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + G +R IG + ++K +QD LTG+ NR+ FL++L T +D++A + Sbjct: 190 NLGRPIRVIGSLTEALDRKSVEREHYNYVYQDALTGVYNRKYFLEKLKTDVDIAAKRPDY 249 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 V ++DID + IN I +GD+VL ++ R+ + + D +AR+ + F +IL + Sbjct: 250 VFAVALLDIDSFGAINASYSIKIGDNVLRTIADRLKSIARPDDCVARIGPDVFAVILHNI 309 Query: 625 NNSL---KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + + + PI+L +++ ++ S+ ++L NA ++ Sbjct: 310 QSRDPNDDLIPLVRNIHNKVKSPISLEGKDLYISVSMSIVV-NQDVDCVEDILANANASL 368 Query: 682 YHAKH---RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVG 737 K GG S + ++ ++ A++ E L+Y PI+ + +IVG Sbjct: 369 RDMKKGINHGGIQFFSGGIREKAMKLYKLEFEIRRAIQAQEFVLMYQPIVDIQAGNKIVG 428 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W+ + G IS +EF+ IAEE +I + +L + W D I + Sbjct: 429 FEALVRWNQSERGIISPAEFIPIAEETGLIVPMGALILRMACKQTKQWVDM-GYKDIQVA 487 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N ++K + + + ++ ++++T +P +KL +E M +++ ++ L +GI Sbjct: 488 VNFSAKQFSMDSMVDDVRRVLTETNLNPRNLKLEITEYTAMCEADKTIEIMRALSNMGIQ 547 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIA 915 +++DDFGT S LSYL P T+K + + E+ + R +I +AK++ +IA Sbjct: 548 ISIDDFGTGYSSLSYLKRYPVHTLKMDKYFVDHVADNEEDASFARMVIGIAKSLNLDLIA 607 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 + + + + L R GC IQ + + PL + L+ +KE + + Sbjct: 608 EGVETKEQLDFLYREGCHLIQGFYFSRPLNTDMALEYMKEHYNV 651 >gi|316935682|ref|YP_004110664.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315603396|gb|ADU45931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris DX-1] Length = 875 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 134/554 (24%), Positives = 254/554 (45%), Gaps = 29/554 (5%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 +L V + D + + GL + + Sbjct: 325 ALTVQNTADGRYVLANRGAEIIFNRRREDATGLTTAEIFNTKE-----------ARLIAE 373 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 D + G + E + A + R +++ I D+T+++++ Sbjct: 374 RDELAIRKGGLVVEEHPISTA-GGLRLFVTRRMTVTDEADQAHYLIKTHVDVTDRRQTEA 432 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A+ D LT +PNR +FL LT +++ + + V+ +D+D K+INDV G A+ Sbjct: 433 RMAHMAYHDGLTDLPNRDAFLKSLTQMIE-ACDNAVDEFAVLSVDLDGLKEINDVFGHAI 491 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +LV + RRI E ++ARLSG+ FG+I+ + + A + K++ + Sbjct: 492 GDKLLVEVARRI-EWAARGGVVARLSGDEFGLIIDGPQ-PAEARELASMVAKALVPGFVI 549 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705 + + + + G A + ++ ++ +L NA A++ AK RG V + DR Sbjct: 550 DGKTVRIGVTTGIALFPANGTDAASLLANAGAALFRAKAKARGSVTVFEPEMDMQIRDRR 609 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLM----DEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++ +DL A+ N E+ L Y P + +IVG EAL +W HP G + SEF+ +A Sbjct: 610 VLHQDLSNAIRNGEMSLYYQPQASSTKRVGNNDIVGFEALTRWRHPTRGFVPPSEFIPLA 669 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I + ++L R SW P+ + +N++ L+ +L + ++ +T Sbjct: 670 EESGLIVELGEWILREACRQAASWAR-----PLQVAVNLSPAQFLNTDLVAFVHGVLLQT 724 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P R++L +E V++ + +R LL RL+ +G+ +++DDFG+ S L+YL PFD + Sbjct: 725 GLEPGRLELEITEGVLIDDFDRGLSLLRRLKALGVRVSMDDFGSGYSSLTYLQAFPFDKI 784 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + + AI+R++I + + T++A+ + + + L CD +Q Sbjct: 785 KIDRAFIMNLGRNPQSAAIVRAVIGLGHGLGVTLVAEGVETQDQLDFLVDEACDAVQGYL 844 Query: 940 VASPLGFNSILKLL 953 + P + + L Sbjct: 845 IGKPAPIDQY-RWL 857 Score = 43.4 bits (101), Expect = 0.19, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 4/140 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIR 450 ++ + + + + V I + T+ GL+ + G Sbjct: 173 ELRRVTRELSTTKQFLESVIDNIPVCVAAKTIDDGRYILANRAFETLSGLSRDRIIGSTA 232 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + N R S + G E V + R+ N G+ Sbjct: 233 D--DLYPPRSAANIREADRSALKSSAGSDTSELTVEIGQGERVLASNRVVA-RNERGEPE 289 Query: 511 RYIGIANDITEQKKSLEGIL 530 I + D+T ++ + Sbjct: 290 FLIALFEDVTNRRALSIELE 309 >gi|196041290|ref|ZP_03108584.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] gi|196027775|gb|EDX66388.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99] Length = 689 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 122/549 (22%), Positives = 248/549 (45%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ N +I+ + D+T+Q + Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNDEIVGVYIVTRDVTKQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ FA +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K S Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|94498467|ref|ZP_01305024.1| sensory box/GGDEF family protein [Sphingomonas sp. SKA58] gi|94422115|gb|EAT07159.1| sensory box/GGDEF family protein [Sphingomonas sp. SKA58] Length = 821 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 131/581 (22%), Positives = 250/581 (43%), Gaps = 15/581 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + ++ V + ER LA+ +G +WD+D + + +P++ +LG++ Sbjct: 246 YGSLEDVHERHMAEHDLAQSEERFRLAIQSAGLGIWDFDSRTGQRSWSPELRAMLGVSPD 305 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRV-RAADNQFHWMIIRI-R 500 + L +H +DR + L + G + R+ RA D W+ Sbjct: 306 -VTPTTELALSLVHPDDRPRLQDKLAAVAGGGLPAHFEDMLRIYRATDGALRWIKSTGWT 364 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 +++G + R I D+TEQ+ S I A D +T +PNR S+ L + +A Sbjct: 365 TRCDTDGSV-RIIITFLDVTEQQDSERRIRWAATHDAMTRLPNRSSWQQTLDD-MAKAAR 422 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++++DID K+ ND LG GD +L + R+ ++ RL G+ FG++ Sbjct: 423 RSGDSFALLLMDIDDLKRTNDSLGHDAGDALLCAFAERLQAAAPPDAVIGRLGGDEFGLL 482 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAEL 679 + +++ + + A+ +++ P R + S+G A + E+ K A+L Sbjct: 483 SSTLSDATRAEAWGKALIETLRRPHMHEGRSLDCGVSMGAALFGGDAGSEGDELFKAADL 542 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 A+Y +K G + F S + + + + + Y P I L + G Sbjct: 543 ALYTSKAAGRGRLTLFHSSLRAEAQQRSSMIRMARQIIADDLIMPYYQPKIDLRTRMVTG 602 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMI-KAINLFMLERIARDIISWRDQANMPPIFI 796 EAL++W HP+ G + A + I + ML+++ RDII W D P + Sbjct: 603 YEALLRWCHPRLGVQLPGS-IAAAFDHGEIAVGLTQTMLDKLLRDIIRWLDAGLDPG-SV 660 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIG 855 N ++ D + + + ++L +E+V +G ++ L K G Sbjct: 661 AFNASAADFTHAGFADSVLERLRLANIPTRHLELEVTETVFLGRGADQVATALRCFAKEG 720 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913 + + LDDFGT + LS+L + P D +K + S ++ AI+ +I+ + + + Sbjct: 721 VRVALDDFGTGYASLSHLKHYPVDVLKIDRSFVSNMDNDAGDAAIVDAIVKLGDSFGMEV 780 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +A+ + E+ + L GC Q H+ P F+ + ++ Sbjct: 781 VAEGVETELQAQLLLAHGCPIGQGFHLGRPQPFDVVTAKMR 821 Score = 82.3 bits (202), Expect = 4e-13, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 13/153 (8%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 Q + D R S+A+ S + W P A I G++ Sbjct: 122 VADAQPYHELLSAAVAESRDHYRWSVAL--SPQVPWTAGPDGAIEEVGPRFAEITGISKD 179 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G W +H D I D + + E+RVR + WM Sbjct: 180 EALGQ--GWATVLHPEDETRVLGIWDRHLAN-GEPVDIEYRVRLRSGHYRWMRACAAARR 236 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 +++G I+R+ G D+ E+ A D Sbjct: 237 DADGRIIRWYGSLEDVHER--------HMAEHD 261 >gi|15964712|ref|NP_385065.1| hypothetical protein SMc00038 [Sinorhizobium meliloti 1021] gi|15073890|emb|CAC45531.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021] Length = 772 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 127/441 (28%), Positives = 223/441 (50%), Gaps = 7/441 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ + I A D LTG+PNR F +++ +L+ D + +D+D +K IN Sbjct: 332 ERKRAEDRIGFMAHHDALTGLPNRVLFEEQVAGMLEEIRERDQW-AVLAFLDLDDFKLIN 390 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639 D LG A GD++L + R+ ++ D + R+ G+ F I+L + +R Sbjct: 391 DSLGHATGDELLKIVAGRMRAAVRRSDSVVRVGGDEFIILLNGLPKERDVVLSRLEDIRT 450 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +IAMP+ L R + V+ S+G A + + T+ E+L NA++AMY AK G N+++ F Sbjct: 451 AIAMPVQLQGRSLQVSCSMGVACFPNQGKTAGELLANADMAMYRAKELGRNNIQVFTEEM 510 Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 +++ +E+L A+ E L + P + L I EAL++W HP G IS + F Sbjct: 511 AARAHEKLQSQEELREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAF 570 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I I ++L R + +W+D PP+ + +N++++ + + A+ Sbjct: 571 IPLAEETGLIVPIGDWVLRTACRQLKAWQDAGL-PPLIVSVNVSARQFRERNWAARVAAV 629 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T ++L +ES++M + + + L IG+ L +DDFGT S LS L P Sbjct: 630 LEETCLEARYLELELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFP 689 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S +T +AI +II +A+ + +IA+ + E ++ L + GC I Sbjct: 690 VRRLKIDRSFVTDIPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEI 749 Query: 936 QDSHVASPLGFNSILKLLKER 956 Q + PL LL Sbjct: 750 QGYFFSQPLPGEDFEVLLSSE 770 Score = 47.3 bits (111), Expect = 0.015, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 456 IHI-NDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYI 513 +H + E R + D W++ P+ + +G I+ + Sbjct: 100 LHPHEFAQAVADTERRVLETGEPIFGIEERAIVTKDRD-RWLMTSKVPLRSKSGRIIGIV 158 Query: 514 GIANDITEQKKSLEGILCNAF 534 GI+ DI+++K + + A Sbjct: 159 GISRDISDRKAAERLLEGQAR 179 >gi|213158060|ref|YP_002320111.1| sensory box protein [Acinetobacter baumannii AB0057] gi|213057220|gb|ACJ42122.1| sensory box protein [Acinetobacter baumannii AB0057] Length = 878 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V T Q D E L + + + ++ D + + P + G + Sbjct: 304 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 362 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499 + + ++ + + + G +F + + ++ + I Sbjct: 363 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 418 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I+ YIG A D+T+QK+ + + D+LT +PNR + ++L L + Sbjct: 419 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 478 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ I+ID+++ N+ L GD++L +R+ ++A L+G+ F I Sbjct: 479 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 537 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I I + + +++ P + E+E +TASIG A + + +AE Sbjct: 538 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 597 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 A+ AK GGN + + + + ++++L A++N E + Y P I L D+ I G Sbjct: 598 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 657 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + + F+ AE +I I +L+++ + + W+ + + + Sbjct: 658 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 716 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI ++ + L + ++ S ++L +ES ++ N + + LL +++ IS+ Sbjct: 717 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 776 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917 LDDFGT S L+YL P D +K + + ++ +++ AI+ ++I M K++ ++A+ Sbjct: 777 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 836 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E + L + CD++Q + PL N IL+ L+ Sbjct: 837 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 873 Score = 93.1 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 97/333 (29%), Gaps = 40/333 (12%) Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW 278 + + + I+ L + + + ++S+ II L R+ Sbjct: 18 LVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRY 77 Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + + + + + ++ T Y + Y++ Sbjct: 78 F-------YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKIS 130 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 L+ + + L L V Q Q Sbjct: 131 QLL----------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ 180 Query: 399 GIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + ER + A +G WDWDI + ++ T + Sbjct: 181 KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQT 235 Query: 445 MHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + P+ ++ L IH NDR F L + + FR+ + + W+ R + Sbjct: 236 QNTPLHLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVI 295 Query: 503 SNS--NGDILRYIGIANDITEQKKSLEGILCNA 533 S LR +G+ DI ++KK E + +A Sbjct: 296 SRDPKTNKALRMVGMTRDIHQEKKDQEHLRLSA 328 >gi|301346879|ref|ZP_07227620.1| sensory box protein [Acinetobacter baumannii AB056] gi|301596785|ref|ZP_07241793.1| sensory box protein [Acinetobacter baumannii AB059] Length = 875 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V T Q D E L + + + ++ D + + P + G + Sbjct: 301 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 359 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499 + + ++ + + + G +F + + ++ + I Sbjct: 360 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 415 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I+ YIG A D+T+QK+ + + D+LT +PNR + ++L L + Sbjct: 416 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 475 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ I+ID+++ N+ L GD++L +R+ ++A L+G+ F I Sbjct: 476 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 534 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I I + + +++ P + E+E +TASIG A + + +AE Sbjct: 535 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 594 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 A+ AK GGN + + + + ++++L A++N E + Y P I L D+ I G Sbjct: 595 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 654 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + + F+ AE +I I +L+++ + + W+ + + + Sbjct: 655 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 713 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI ++ + L + ++ S ++L +ES ++ N + + LL +++ IS+ Sbjct: 714 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 773 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917 LDDFGT S L+YL P D +K + + ++ +++ AI+ ++I M K++ ++A+ Sbjct: 774 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 833 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E + L + CD++Q + PL N IL+ L+ Sbjct: 834 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 870 Score = 93.1 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 97/333 (29%), Gaps = 40/333 (12%) Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW 278 + + + I+ L + + + ++S+ II L R+ Sbjct: 15 LVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRY 74 Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + + + + + ++ T Y + Y++ Sbjct: 75 F-------YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKIS 127 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 L+ + + L L V Q Q Sbjct: 128 QLL----------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ 177 Query: 399 GIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + ER + A +G WDWDI + ++ T + Sbjct: 178 KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQT 232 Query: 445 MHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + P+ ++ L IH NDR F L + + FR+ + + W+ R + Sbjct: 233 QNTPLHLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVI 292 Query: 503 SNS--NGDILRYIGIANDITEQKKSLEGILCNA 533 S LR +G+ DI ++KK E + +A Sbjct: 293 SRDPKTNKALRMVGMTRDIHQEKKDQEHLRLSA 325 >gi|27382218|ref|NP_773747.1| hypothetical protein bll7107 [Bradyrhizobium japonicum USDA 110] gi|27355389|dbj|BAC52372.1| bll7107 [Bradyrhizobium japonicum USDA 110] Length = 895 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 137/574 (23%), Positives = 273/574 (47%), Gaps = 21/574 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGL 440 V + + SQ + S + L V + + + TIL Sbjct: 314 FLMLVFEDITDRRSLSQELESTKKFLELVVDNIPVALIVEQVKDGRYLLANRSAETILNR 373 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G + + + ++ + +RG + E + D ++ R Sbjct: 374 RREEATGLTAS--DIFNPKEAKLIIARDEAAIK-KRGMITEEHPISTKDGLRLFLTRRAT 430 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 +S++ G+ I D+T+++++ + A+ D LT +PNR +FL LT +++ + Sbjct: 431 VLSDA-GEPQYLIKTHEDVTDRRQTESRMAHMAYHDGLTDLPNRAAFLQALTQMIE-ACE 488 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 V+ +D+D K++NDV G A+GD +L+ + +R+ + ++ARLSG+ FG+I Sbjct: 489 GTGEEFAVLCVDLDGLKEVNDVFGHALGDKLLIEVAQRLQDSA-RGGVVARLSGDEFGLI 547 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + A + +++A + R + A+ G + + + + +L NA A Sbjct: 548 IDG-KQPEAGLALAQQLGEAVAREFQIDGRPVRAGATTGMSIFPHNGADGASLLANAGAA 606 Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPI----IRLMDEE 734 ++ AK + + ++ + DR ++ +DL +A++N EL L + P + + E Sbjct: 607 LFRAKQKSRGTISLYQPEMDQQIRDRRVLHQDLSMAIKNGELSLAFQPQGAAGHSVAESE 666 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I+G EAL +W HP G +S +EF+ IAEE +I + ++L R+ SW P+ Sbjct: 667 IIGFEALARWQHPVRGQVSPAEFIPIAEESGLIVEMGEWILREACREAASWPK-----PL 721 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ + ++ + +++ +T +P R++L +E V++ + +R LL RL+ + Sbjct: 722 QVAVNLSPAQFMHGDVVGLVHSILIETGLAPGRLELEITEGVLIEDFDRGLALLRRLKAL 781 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ +++DDFG+ S LSYL PFD +K + + + + AI+R++I + +E + Sbjct: 782 GVRISMDDFGSGYSSLSYLQAFPFDKIKIDRAFIINLGRNPQSAAIVRAVIDLGHGLEMS 841 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 IIA+ + + L + GCD +Q + PL Sbjct: 842 IIAEGVETLDQLAFLAKEGCDGVQGYLLGKPLPI 875 Score = 52.6 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 4/149 (2%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLA 441 V S+ + S + + V +I + G Sbjct: 188 SVATHLDVSEERRLSRQLASTKQFLETVLDNVPACVAAKNIEDGCYIFANTAYERFWGFT 247 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G + + + G+ + EF V + + Sbjct: 248 RDQVVGKNA--RELFAPVSAASIEATDRAALNSPDGQFRNEFEV-DRGGERRMVASIRIV 304 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 + N N + + DIT+++ + + Sbjct: 305 VRNENNKPEFLMLVFEDITDRRSLSQELE 333 Score = 38.0 bits (87), Expect = 7.7, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 30/202 (14%) Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A + PA ++ N I AL+GG+V+ L+ + H A Sbjct: 23 AGTVAPARAFALSDSFAPPSSLDNLDPNLIW-EALIGGIVVCAFLVAIALWIHS-ALRRT 80 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S A+ V D R + I GL+ + W Sbjct: 81 RRLQLRRNAFVSSAMNNLNQGVVMTDAQRRVIFCNDRYLEIYGLSRSDL------WADMN 134 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY---- 512 + + L G G EF +AA +G + Sbjct: 135 GHDILE-----LRRKRGVLGGVSDKEFYEKAASG-------NGLITELPDGRAILVKYFV 182 Query: 513 ------IGIANDITEQKKSLEG 528 + D++E+++ Sbjct: 183 LPNGGSVATHLDVSEERRLSRQ 204 >gi|67920984|ref|ZP_00514503.1| GGDEF [Crocosphaera watsonii WH 8501] gi|67857101|gb|EAM52341.1| GGDEF [Crocosphaera watsonii WH 8501] Length = 595 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 129/440 (29%), Positives = 236/440 (53%), Gaps = 5/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + K+ E + +A QD LT + NR FL+R+ L +++ V VID+D++K IN Sbjct: 154 DLKQIQEKLSFHARQDTLTHLVNRSVFLERIDLALKRFHEEEDYLFAVFVIDLDRFKMIN 213 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G VGD +LV ++R + L+ D +AR+ G+ F I+L + + A ++++ Sbjct: 214 DSDGHQVGDLLLVEVSRILESLVSQADTVARVGGDEFAILLDPIRDVNEALKLAQNIKEA 273 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + + R++ +++SIG SS ++ E+L++A++AM AK +G E F Sbjct: 274 LTTSFFIQGRQVFISSSIGLTFSESSYNSALEILRDADIAMGKAKQKGRGKYEIFNQEMH 333 Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + ++ DL +E E + Y PI+ L ++VG EALI+W HP G IS EF+ Sbjct: 334 TQALNLLTLETDLRYGIEKQEFEVYYQPIMNLNPIKLVGFEALIRWQHPDKGFISPGEFI 393 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQAL 817 +AE +I I +LE++ + I +W+ + + I +N++SK + + + + + Sbjct: 394 PVAENTGLIIPIGKIVLEKVCQQIQTWKKKFQQITILKIAVNLSSKQFKNAYILQEIDEV 453 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +T + + +KL +E+ ++ + + + LL +L++ + + LDDFGT S LSYL P Sbjct: 454 MERTGLTSNNLKLEITETSLIDHSQETIKLLKQLKQRNLEICLDDFGTGYSSLSYLHRFP 513 Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S + E+ + I++SII +A N+ ++A+ I E + L ++ CD+ Sbjct: 514 VDTLKIDRSFINCIGQPEENLEIIQSIIHLAHNLGMNVVAEGIETEEQLIYLQKLNCDFG 573 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q PL LL++ Sbjct: 574 QGYLFNRPLTAQETENLLRD 593 >gi|229143272|ref|ZP_04271703.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] gi|228640079|gb|EEK96478.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24] Length = 689 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 122/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ + P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLSTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K S Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E IIA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|66046558|ref|YP_236399.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63257265|gb|AAY38361.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 732 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 129/588 (21%), Positives = 231/588 (39%), Gaps = 18/588 (3%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +V+ +I + + R S D + D ++ I Sbjct: 146 LVLQDLAVMIIERMELRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAEII 205 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494 G S G + I R L + D Sbjct: 206 FGHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAVHRDGHTIP 263 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + + S G+ I DIT++ ++ + + A D+LTG+ NR + R+ Sbjct: 264 IELSLS-QWTSAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 D L +++ID+D +K +ND LG A GD VL + R+ E + +++RL G Sbjct: 322 C-----DAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGG 376 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F + L + K + + I PI + I + ASIG + S +ML Sbjct: 377 DEFVVFLSETADPDKAIKLGLELIAVIEEPIEFEDNSIYIGASIGVSVRCGSDYDEEQML 436 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEASLLAVPVGEWILRSACEQAAQWRNTGCEE 556 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 -FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +G+ + DDFGT + LS L P +K + S ++G ++K I+ +++ +A Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFN 675 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERF 957 + A+ I + CD Q P+ + + + Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTKRYISSHN 723 >gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodiesterase A protein [Herbaspirillum seropedicae SmR1] gi|300072955|gb|ADJ62354.1| diguanylate cyclase/phosphodiesterase A protein [Herbaspirillum seropedicae SmR1] Length = 1002 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 119/439 (27%), Positives = 227/439 (51%), Gaps = 7/439 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E++ + I AF D+LTG+PNR L + + + + + VM ID+D++K++N Sbjct: 546 EREDARARIHQLAFYDSLTGLPNRSLLLVQAGQAIAAAERNCST-VAVMFIDLDRFKQVN 604 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG GD++L ++ R+ + DI+ RLSG+ F ++L ++ + + +++ Sbjct: 605 DSLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVLTQY-DTQHLTEVVKRIQER 663 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698 +AMP ++ + +ASIG A + + +L A++AMY AK +RG S ++ Sbjct: 664 LAMPCHINGTPLNPSASIGVAIFPDNGNDIETLLHRADIAMYQAKAVNRGRFSFFSEEMN 723 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 S +R+ ++ L A+ +L L + P I+L D+ + G+EAL +W HP+ G IS F+ Sbjct: 724 SMAQERLALESALRDALRGGDLELNFQPQIKLHDQSLHGVEALARWHHPQLGQISPGRFI 783 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAEE +I + + LE + WR + P I +N+++ + D +L + + L+ Sbjct: 784 PIAEECGLIGELGKWALEEACFQLSDWRRRGIQVP-SISVNLSATNFHDLDLPQFVTGLL 842 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + PS + L +E+V+M + + + +GI L +DDFGT S L YL +P Sbjct: 843 RRYALEPSDLTLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYSSLGYLRKLPV 902 Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + S + + A+ ++I + ++++ T++A+ + L GCD Q Sbjct: 903 SELKLDQSFVRDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYALLISQGCDVAQ 962 Query: 937 DSHVASPLGFNSILKLLKE 955 + P+ +++ +++ Sbjct: 963 GYLFSRPMSADALENWVRD 981 Score = 55.3 bits (132), Expect = 6e-05, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 4/136 (2%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q Q + LA L + ++ + + +LG + G Sbjct: 4 QDSFMGEVDHQRLSGSERDALLAALWRSMAILEFSADGTVLEANENFLAMLGYRRADVVG 63 Query: 448 PIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 L + + + + R W+ P+ ++ Sbjct: 64 QHHRML--CDPAYVQTDAYQQFWEHLR-KGELIAGTLQRRHVGGATVWLEALCSPILDAQ 120 Query: 507 GDILRYIGIANDITEQ 522 G +L+ I +A DI+ Sbjct: 121 GQLLKVISVAADISAH 136 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 5/125 (4%) Query: 402 SDGERQSLAVLGSGD---IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 SD E L LG + V D V +LG S + G + L Sbjct: 264 SDREHLHLLSLGINETDNAVLITDDQNRIVFHNTGFTRMLGFESQQVIGRLPGELFASRP 323 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + V R E + Q W+ + P+ + G ++ + + D Sbjct: 324 TFVKSLERCHGELVQGR--SYHTEELIHDMQEQPVWISAVVNPILDGAGKLIHAVCVMTD 381 Query: 519 ITEQK 523 IT K Sbjct: 382 ITNTK 386 Score = 44.6 bits (104), Expect = 0.079, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 7/172 (4%) Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS----LA 410 I L + A V L ++ + + D R S A Sbjct: 90 GELIAGTLQRRHVGGATVWLEALCSPILDAQGQLLKVISVAADISAHIDDSRHSNSILSA 149 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + S V + + + + + + G + L + + Sbjct: 150 LNRS-LGVVELSPEGVILAANGNYLKTMEYLAEDLLGQPHSILCEADYAASEEYTCFWRD 208 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 R F R + W P+ +++G R I I D+T + Sbjct: 209 VSLGR--FFSGRFPRRTRSGRTIWWEATYSPLLDAHGKAERVICIGTDVTYR 258 >gi|149908086|ref|ZP_01896754.1| PAS:GGDEF [Moritella sp. PE36] gi|149809092|gb|EDM69023.1| PAS:GGDEF [Moritella sp. PE36] Length = 1165 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 128/584 (21%), Positives = 251/584 (42%), Gaps = 15/584 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 F +++ + + + E+ L + + + D+ + P G Sbjct: 571 FKLLEFAVQLSVIAIERYLSDEKLRLSSRVFSDTNEGLMITDVTGKIIDVNPAFTRATGY 630 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + G + L F + S + G E + + + + I Sbjct: 631 SRSEVLGQKPSILAS-DKQSPAFFIEMWQSLMEQ--GYWHGEVWNKKKNGELFAARLSIS 687 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 ++N +G+ L Y+G+ +DIT+ K+ + + A D LT +PNR DR + + S Sbjct: 688 SLTNDDGENLHYVGLFSDITQIKQQQQKLEMMAHYDMLTKLPNRSLLADRFKSGIAHSQQ 747 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D V +D+D +K +ND G VGD +L+++ +R+ ++ D +R G+ F ++ Sbjct: 748 TD-TMLGVCFLDLDNFKPVNDSYGHDVGDQLLIAVAQRLKSNIRDEDTASRQGGDEFVLL 806 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L + + + +A P + ++ SIG + +L++A+ + Sbjct: 807 LGDIKSLAHCDETLQRINYFLAQPYIIAGHTFNISVSIGVTLYPDDDADLDTLLRHADYS 866 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGL 738 MY AK G N F + ++ ++ A+ N+E L Y P I + ++ G Sbjct: 867 MYQAKLTGKNRFHLFNPERDQQKIQKHQQLDEIKQALSNNEFALYYQPKINMKTGKVFGA 926 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G I +F+ I E + I +++ + + I+ W+ + + Sbjct: 927 EALIRWFHPEKGLIPPLDFLPIIEGSELENQIGDWVINQALKQIVEWQKLGIFME--VSV 984 Query: 799 NIASKDLLDNELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-IGI 856 NIAS LL + +++ ++ ++L ES +G+ R +L R +G+ Sbjct: 985 NIASYHLLSAKFLTLLESALASHPNLDAQYLQLEILESSALGDLNTIRNILNTCRDVLGV 1044 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 ++ LDDFGT S L++L +P +T+K + + + AI++ ++ +A + +I Sbjct: 1045 NIALDDFGTGYSSLTHLKNLPANTIKIDQNFVKNMLDDPDDYAIIKGVLALADSFNREVI 1104 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 A+ + L MGC Q +A P+ + I L P Sbjct: 1105 AEGVETTEHGLMLLSMGCYAAQGYGIARPMPASDIPNWLHNYIP 1148 Score = 88.9 bits (219), Expect = 4e-15, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 67/190 (35%), Gaps = 4/190 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--G 399 W+L G I+ + + + ++++ Q L ++ Sbjct: 238 VTWMLKMSPINGWVHYISLLAMSLLSMTFTILTTFSAILIMRIKDNQKSLENIVATRTRE 297 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + R ++A+ +G + ++ +I V+ + + + WL IH + Sbjct: 298 LGDNLTRLNMALTSTGQVWFELNIQSGEVSFGGKNEQLTDVNPSDIQTIFEQWLEKIHPD 357 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGDILRYIGIAND 518 D ++ + + E+R + D + W+ +++ + G+ D Sbjct: 358 DFESASNRYKKSL-VSGMPFELEYRRKTKDGNWLWIHTACEFTAWDAHHKPIWCTGVHTD 416 Query: 519 ITEQKKSLEG 528 IT++K+ Sbjct: 417 ITQRKQIELR 426 >gi|30018735|ref|NP_830366.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|229125981|ref|ZP_04255005.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] gi|29894276|gb|AAP07567.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579] gi|228657464|gb|EEL13278.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4] Length = 689 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIK-KEYVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K S Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E IIA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|170724023|ref|YP_001751711.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619] gi|169762026|gb|ACA75342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida W619] Length = 896 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 148/568 (26%), Positives = 269/568 (47%), Gaps = 17/568 (2%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + P I ++ + G LP + Sbjct: 335 RRTAASALHLFQRAVEQSASAFLLVNRDGVVEYVNPSFTAITQYSTDEVQGHHLAELPAL 394 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L Q EF+ R + + +W + I + N ++ YIG Sbjct: 395 -----ENLSELLFDTPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I D+T+ K + + I A+ DNLT + NR +F+ L A D ++++DID Sbjct: 450 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGQSPICLLLVDID 506 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L +LAR + N F ++L + + A Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLSVGGVLARFASNEFAVLL-DDTSLEDGQGVA 565 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + +++ P+ + + I VTAS+G A + ++KNA LA++ AK G + V+ Sbjct: 566 QQLLRTLDKPMFVDNQLINVTASVGLACAPLHGSDPTTLMKNAGLALHKAKANGKHQVQV 625 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++GLEAL++W+HP+ G I Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELEVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 685 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I +++ + R + +A M + + IN++ K D +L Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQSCR-MSQQLREAGMGNLHVAINLSPKQFSDPDLVA 744 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + +++ + ++L +E +++ E + L L+ +G++L +DDFGT S LSY Sbjct: 745 SIASILHEEALPAHLLELELTEGLLLEATEDTHRQLDELKALGLTLAMDDFGTGYSSLSY 804 Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + S + + + I +++ MA N++ ++A+ I + L R Sbjct: 805 LKKFPIDIIKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEGIETPEQLAFLRRH 864 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958 CD Q P+ + + LK R+P Sbjct: 865 RCDVGQGYLFDRPIPGRELAERLK-RYP 891 >gi|327191881|gb|EGE58874.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512] Length = 777 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 143/748 (19%), Positives = 289/748 (38%), Gaps = 48/748 (6%) Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271 R + I A A+ + + L+ + + LS + Sbjct: 43 AGRRKLWIGASAFAFGTGVWATHFIAMLAYDGGM-PISYQLGLTALSFLLSVAGSW--AA 99 Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI------ARITLASIVLYYTYF 325 L ++ + I + + I + A + Sbjct: 100 ILVASKGRGRFSSIQGGVLMALGIAAMHLTGMQAIETQAEILYDPTMTVTAVLAGALLSS 159 Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFI------GLWMAITKRLDNDIIQPALVGGLVLIV 379 I ++ + L+ + I + + + ++ L L+ + Sbjct: 160 IAFYAFFHLKGLRRLLASSITFVLAICALHFISMASITLVPDPGKEVPATVLDTSLLATI 219 Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 +++ T + + F + +D + S + + + T + G Sbjct: 220 VVVAATALILIAIAVAFFESHLTDLRGLA---NASQEGLLILR-EGRIIDTNERFQGLSG 275 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + G + +L + G R E ++ + + + + Sbjct: 276 WKLADLSGKAPSI--------------VLTAVQGQNRP---GETLLKTRNGREIAVEVNT 318 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + + D+TE++++ E I A D LT +PNR F R+ L ++ Sbjct: 319 SRIVYRGHNCD--VLAVRDLTERRQAEEIIEHLAHHDVLTDLPNRSLFDKRIRQALQMAK 376 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 N + ID+D++K +ND+ G A GD +L + + + D +ARL G+ F I Sbjct: 377 -GKNSEVALFYIDLDRFKTVNDIFGHAEGDRILCKVAAILRRVADERDTIARLGGDEFAI 435 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I + A A+ A +++ V S+G A + + E+ NA++ Sbjct: 436 IQSAGQQPAAAQKLAAAILDEFAAEMDMARDPTAVGVSLGIALYPADGSDPDEICNNADI 495 Query: 680 AMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 A+Y KH G F R I+ +L A+ +++++ Y P++ EI G Sbjct: 496 ALYRVKHGGRGKACFFNAEMDEATRARRQIESELRHAIIRNQIHVSYQPVLDAQSGEISG 555 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W+ P G F+ IAEE I + ++L++ ++ W D P+ I Sbjct: 556 YEALMRWNRPGHGLSEPDIFIPIAEESGSIVQLGEWVLQQACKEAARWPD-----PLRIA 610 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++ + LCE ++A++ +T +P+R+++ +E+ ++ + +R L RLR +G+ Sbjct: 611 VNVSPVQFMLPNLCERIEAILKETGLAPARLEIEITEAALIRDRDRVMATLQRLRSLGVH 670 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIA 915 + +DDFGT S LS L PFD +K + S A I+R+II + ++ ++ Sbjct: 671 IVMDDFGTGFSSLSNLRTFPFDKIKVDRSFTGMLEHDAAARSIVRAIIGLGHSLGMPVVT 730 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASP 943 + + E + + GC +Q + P Sbjct: 731 EGVETEAQRQIVVEEGCAQVQGFLLGRP 758 >gi|218133210|ref|ZP_03462014.1| hypothetical protein BACPEC_01072 [Bacteroides pectinophilus ATCC 43243] gi|217992083|gb|EEC58087.1| hypothetical protein BACPEC_01072 [Bacteroides pectinophilus ATCC 43243] Length = 718 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 138/580 (23%), Positives = 243/580 (41%), Gaps = 39/580 (6%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILGLA 441 +IQ + + + S E + G + + + Sbjct: 159 TARIIQSIAQKKIINNSLLSSYELLREILSNIGSGIIVCSQENGNVLFENDIAQN----- 213 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFR-VRAADNQF-HWMII 497 D R + + +G + R V D Q W + Sbjct: 214 -------------------ADEVRRTMKECIQDFFDKGCPMEDIRPVENYDAQSGLWFEV 254 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 R P++ +G + I A DIT++KK+ + I A D LTG+ NR L ++ Sbjct: 255 RFAPLNWLDGSPV-IICTAVDITQKKKNQQKIEYQAHNDFLTGLYNRMKCESDLRKVIKN 313 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + D VM ID+D +K IND LG GD +L + I + R+ G+ F Sbjct: 314 AVKD-GTTGAVMFIDLDNFKHINDGLGHQYGDVLLQQVAAGIQGIAGLRGHCYRMGGDEF 372 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 II+ ++ + L+ E T S+G A + +E++K A Sbjct: 373 VIIIEP-QLYDQLDRLVRIISDMFNRSWYLMGTEYYCTMSMGIARFPEHGSDVNELIKKA 431 Query: 678 ELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAV--ENSELYLVYHPIIRLMDE 733 ++AMY AK G N + S ++ I+ ++ AV E E + Y P++ + Sbjct: 432 DIAMYEAKKGGKNRYAYYSAGNDSGSIKQLDIENNMRQAVASECDEFIVFYQPVVDAVTR 491 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 E V EALI+W+ G ++ EF+ +AE L +I +I F+LE R W + P Sbjct: 492 ECVSCEALIRWNSKALGFMAPGEFIPLAEYLGLITSIGDFILEEACRQCKDWNEH-GFPD 550 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I IN++ L+ ++ + ++ ++ +T +P I L +ES + + ER ++ LR+ Sbjct: 551 FRININLSVVQLMQKDVVDNVKKILDRTGVNPHNIVLEITESFAINDMERVMNIVKGLRR 610 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIET 911 +G + LDDFGT S L+Y+ +P D +K + + + + A ++ I+ ++K I T Sbjct: 611 LGPKIALDDFGTGYSSLNYIKQLPLDIIKVDKTFIDDIVDDDYAKAFVKLIVELSKTIGT 670 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 I + + + L+++G DYIQ + P+ Sbjct: 671 KICVEGVESREQYEVLSQIGVDYIQGYYFGKPVPVGEFAH 710 >gi|190574274|ref|YP_001972119.1| putative PAS GGDEF EAL domain-containing protein [Stenotrophomonas maltophilia K279a] gi|190012196|emb|CAQ45819.1| putative PAS GGDEF EAL domain protein [Stenotrophomonas maltophilia K279a] Length = 919 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 132/548 (24%), Positives = 238/548 (43%), Gaps = 10/548 (1%) Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + ++ + T + I GL + + L + R+ F L Sbjct: 368 EIEVKTRHMQWTEECYRIHGLRKEPI--TLDQALALYTEDSRNAFEAALARIANGGLPE- 424 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 Q + W+ + I +G R++ + DIT ++++ E I A D LT Sbjct: 425 QLDLCFYRQSGLRVWVQVLIELDR-RDGLPPRFVVLFRDITREREANERIELLAHYDLLT 483 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR ++ ++ + D ++ ID+D +K IND G A GD +L + R+ Sbjct: 484 GLPNRVLLGEQTAEAIEEA-RDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRL 542 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 + L+ D+ R SG+ F ++L A + S+A P+ E + V AS+G Sbjct: 543 HQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVG 602 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN 717 A ++ +L+ A+ AMY AK G N + + + ++ ++ L A+E Sbjct: 603 IAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIER 662 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E L Y P++ E +EAL++W P G S +EF+ IAE+ I I ++L Sbjct: 663 EEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNE 722 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R +W I +N+++ L D E + + + P R++L +ES + Sbjct: 723 ACRQATAWDRAGLRFD-RIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESAL 781 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895 + + + R L + G+ L +DDFGT S L+YL P +K + S + G Sbjct: 782 IRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGT 841 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++I+ + + ++A+ + + L R GCD IQ + PL + + L++ Sbjct: 842 AEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQ 901 Query: 956 RFPLVKNT 963 P+ T Sbjct: 902 PQPVSLRT 909 Score = 101 bits (252), Expect = 6e-19, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 11/131 (8%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R LA+ +G +WDWDI DRV TP + L +H D R Sbjct: 107 RWELALDSAGHSLWDWDIPSDRVVRTPAVGD----------ETATEMLARVHGEDIAQVR 156 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524 LD + + +FR R AD Q+ W++ R R + ++G LR +G DI +QK+ Sbjct: 157 AALDEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQ 216 Query: 525 SLEGILCNAFQ 535 + Sbjct: 217 LEGLLQEQQLH 227 Score = 72.7 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 9/155 (5%) Query: 398 QGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 +G+ + + S A + W +D +P++ ++L L G++ G R WL + Sbjct: 218 EGLLQEQQLHLSEAQRIASMGSWSFDPNSGDFWWSPELRSMLALEQGAVPGQ-RRWLKQL 276 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H R R R E + + + + ++P+ + +G R +G Sbjct: 277 HPRSRGALRAAWGRLWRDGRAA-NLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQV 335 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 +ITEQ ++ I T + NR S L R+ Sbjct: 336 QNITEQHQTDALIRWR------TELLNRVSALGRI 364 >gi|126642377|ref|YP_001085361.1| sensory box protein [Acinetobacter baumannii ATCC 17978] Length = 860 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V T Q D E L + + + ++ D + + P + G + Sbjct: 286 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 344 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499 + + ++ + + + G +F + + ++ + I Sbjct: 345 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 400 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I+ YIG A D+T+QK+ + + D+LT +PNR + ++L L + Sbjct: 401 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 460 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ I+ID+++ N+ L GD++L +R+ ++A L+G+ F I Sbjct: 461 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 519 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I I + + +++ P + E+E +TASIG A + + +AE Sbjct: 520 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 579 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 A+ AK GGN + + + + ++++L A++N E + Y P I L D+ I G Sbjct: 580 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 639 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + + F+ AE +I I +L+++ + + W+ + + + Sbjct: 640 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 698 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI ++ + L + ++ S ++L +ES ++ N + + LL +++ IS+ Sbjct: 699 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 758 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917 LDDFGT S L+YL P D +K + + ++ +++ AI+ ++I M K++ ++A+ Sbjct: 759 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 818 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E + L + CD++Q + PL N IL+ L+ Sbjct: 819 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 855 Score = 92.7 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 40/327 (12%) Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284 + I+ L + + + ++S+ II L R+ Sbjct: 6 CLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYF----- 60 Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 + + + + + ++ T Y + Y++ L+ Sbjct: 61 --YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL--- 115 Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + L L V Q Q + Sbjct: 116 -------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERT 168 Query: 405 -------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI- 449 ER + A +G WDWDI + ++ T + + P+ Sbjct: 169 YDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTPLH 223 Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--N 506 ++ L IH NDR F L + + FR+ + + W+ R +S Sbjct: 224 LKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKT 283 Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533 LR +G+ DI ++KK E + +A Sbjct: 284 NKALRMVGMTRDIHQEKKDQEHLRLSA 310 >gi|284042708|ref|YP_003393048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] gi|283946929|gb|ADB49673.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] Length = 1090 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 128/591 (21%), Positives = 256/591 (43%), Gaps = 23/591 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440 + +I V AT + ER + + + + ++ I G+ Sbjct: 504 LTQGIITDVTATRIAEAALAESEERSRAVIGALEEGLLIYGADGRVLSCNAAAVRIFGVD 563 Query: 441 ASGSMHGPIRNWLP---YIHINDRDNFRT-------ILDSFVGYRRGRLQYEFRVRAADN 490 + + G + + D L++ + + +E R D Sbjct: 564 SEEELLGTVVAQGSPRVRMTYEDGSEVTRTNSTAGRALETGLPQPERVVHFE---RDDDG 620 Query: 491 QFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 W + P+ + D+TE++++ E I A+ D+LT +PNR + Sbjct: 621 WELWATVTSHPLLREGESRPYGAVSAFTDVTERRRAQEQIAFLAYHDSLTRLPNRALLDE 680 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 + A ++ +D+D +K +ND LG A GD++L + R+ +++ D+L Sbjct: 681 H-LALALARARRAGESVALLYVDLDDFKAVNDSLGHAAGDELLKRIAVRLRAVVRSSDLL 739 Query: 610 ARLSGNRFGIILISENNSLK--IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 AR G+ F I+L + + A + ++ P +L + E V ASIG + + Sbjct: 740 ARQGGDEFLILLTDLDKDPRLSAEAAAKQVETALIEPFHLADAEFEVGASIGISIYPDDA 799 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHP 726 + ++++A+ AMY K G + S+ S ++ R+ + L A++ + + Y P Sbjct: 800 ADADTLMRHADAAMYEVKQAGRGGIASYGGDSRKTLARLSLTSKLRRALQREDFVVHYQP 859 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 I+ + EAL++W + G + +EF+ +AE+ +I+AI ++L + R +W Sbjct: 860 IVAPATGALHAFEALVRWQDAERGVVGPNEFIPLAEDAGLIEAIGGWVLNEVCRQQRAWH 919 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 D + +N++ + L + ++ + + +PS + L +ES M + ER+ Sbjct: 920 DAGMES--HVHVNVSPRQLRRPDFPSTVRDALEEQRLTPSMLTLEITESAAMLDAERANP 977 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIP 904 ++ L +G+ L +DDFG S L+ L +P T+K + S + G + R A++ +II Sbjct: 978 IVRALHDLGVRLAIDDFGAGHSSLARLRDVPVQTLKIDQSFLRGVPDDRQAAAMITAIIE 1037 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + +A+ + + + L C Q H A PL + +LL+E Sbjct: 1038 LGTALGMVTVAEGVTTDAQRRFLVDGDCPLAQGFHFARPLTADDATRLLRE 1088 Score = 98.9 bits (245), Expect = 4e-18, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 3/142 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI--VWDWDIVRDRVTTTPDIATILGLA 441 ++ V A + + R V + V +WD + + +P I ++G Sbjct: 376 IGILHDVTARVTAAVELAETESRYRTLVETIPAVTYVAEWDELGTLIYVSPQIEEMMGFP 435 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + G W IH +D D + E+R+ AAD + W+ Sbjct: 436 AAGWLGETSLWDTQIHPDDVDRVMAETRYAFRQEQA-FDCEYRLIAADGRIVWVWEHDTV 494 Query: 502 MSNSNGDILRYIGIANDITEQK 523 + + +G GI D+T + Sbjct: 495 IRDEHGRPRLTQGIITDVTATR 516 Score = 71.5 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 14/185 (7%) Query: 347 IFIWFIGLWMAITKRLDNDIIQPALV-GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 + + A L+ + A G L+ V + V H+ + E Sbjct: 212 LLAIPLVAGSACEGVLELRLPDGARADGQLIADVAALAGQVAVHLRYRRGA--ALLDLHE 269 Query: 406 RQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWL--PYIHIND 460 R +LA +G ++ + D + G S + G L Sbjct: 270 R-ALAATNNGIVIAERDEETGGWPATFVNEAFEQLTGYRSDEVVGRSLVLLQGEETDPEA 328 Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 L S R D W I + P+++ +G + RYIGI +D+T Sbjct: 329 IAEMGAALRSA-----DECWVTVRNYRRDGSVFWNEIFLMPVADDDGVVRRYIGILHDVT 383 Query: 521 EQKKS 525 + + Sbjct: 384 ARVTA 388 >gi|26987079|ref|NP_742504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida KT2440] gi|24981704|gb|AAN65968.1|AE016225_1 sensory box protein [Pseudomonas putida KT2440] Length = 896 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 146/581 (25%), Positives = 262/581 (45%), Gaps = 43/581 (7%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + P I ++ + G LP + Sbjct: 335 RRAAASALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPAL 394 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L Q EF+ R + + +W + I + N ++ YIG Sbjct: 395 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I D+T+ K + + I A+ DNLT + NR +F+ L A D ++++DID Sbjct: 450 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGESSMCLLLVDID 506 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L ILAR + N F ++L + + A Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLL-DDTSLEDGQGVA 565 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P+ + + I VTAS+G A + + ++KNA LA++ AK G + V+ Sbjct: 566 QQLLCTLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQV 625 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++GLEAL++W+HP+ G I Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 685 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I +++ + + +A + + + IN++ K D +L Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQAC-CMSQQLRKAGLGNLHVAINLSPKQFSDPDLVA 744 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859 + ++ + E++ E + L L+ +G++L Sbjct: 745 SISTILKE-------------EALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLA 791 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S + + + I +++ MA N++ ++A+ Sbjct: 792 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 851 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I + L R CD Q P+ + + LK R+P Sbjct: 852 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 891 >gi|261212236|ref|ZP_05926522.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341] gi|260838844|gb|EEX65495.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341] Length = 684 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 132/572 (23%), Positives = 254/572 (44%), Gaps = 32/572 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182 Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +I + F T L + + + R +E +++ + + + Sbjct: 183 FIDEKTKTVFSTQLATLLTEKPLVCLTGPRCGFERKIQLHAGSTSLLGSHSQLIL----- 237 Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 D E K+ +A D+LTG+ NR F RL ++ + Sbjct: 238 -------LQDADEAPKQLSATTQVDAHMDSLTGLYNRHGFTKRLEQLI-----HNETPLV 285 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL ++ Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + I P +L + SIG + + +L+NA+ AMY AK R Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++W Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+G +L++DDFGT Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNSITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|116249925|ref|YP_765763.1| GGDEF domain/EAL domain-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254573|emb|CAK05647.1| putative GGDEF/EAL domain transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 794 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 145/779 (18%), Positives = 306/779 (39%), Gaps = 44/779 (5%) Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYM----VNRSSMLIPTFAMAWVVLGYISIDFG 237 +D + + + + +A L + R + I A A+ + + Sbjct: 9 RDNHDWRLVLAAAAVCLVGTMAAMLLLSRAQECDAGRRKLWIGASAFAFGTGVWATHFIA 68 Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297 L+ +P G L A S + + + +++ + ++ Sbjct: 69 MLAYDGGMPIGYQLGLTALSFLLSVVGSWAAILVASESRGRFSRIRGGVLMALGIASMHL 128 Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL--IPAWILIFIWFI--- 352 A + + + + + ++ L + A + F+ I Sbjct: 129 TGMQAIETQAAILYDPFMTLSAVLAGALLSSAAFHAFFQSKGLRRLLASSITFVLAICAL 188 Query: 353 ----GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408 + + ++ L L+ ++++ T + + F + +D + + Sbjct: 189 HFISMASITLVPDPGKEVPATVLDASLLAAIVVVAATTLILIALAVVFIESHLTDLKGLA 248 Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 S + + + + G + G + + Sbjct: 249 ---NASQEGLLILR-EGRIIDANERFQGLSGWKLAGLSGKAPS---------------AV 289 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + V E + D + + + + + + D+TE++++ E Sbjct: 290 LTAVQGTGQNRPSETVLNTRDGREIAVEVTASRIVYRGHNCE--VLAVRDLTERRQAEEM 347 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 I A D LT +PNR F R+ L ++ N + +D+D++K +ND+ G A G Sbjct: 348 IEHLAHHDVLTDLPNRSLFDTRIRQALQMAER-KNSEVALFYLDLDRFKAVNDIFGHAEG 406 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L + + + D +ARL G+ F II ++ A + A ++ Sbjct: 407 DRILRKVASILRRVADESDTVARLGGDEFAIIQLAGQQPAAAQKLAADILGEFAAEMDTA 466 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVM 706 V S+G A + + + E+ NA+ A+Y KH G + F +R Sbjct: 467 RDPTAVGVSVGIALYPTDGAAAEELCNNADTALYRVKHDGRGKICFFDAEMDKAARNRRQ 526 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 I+ +L A+ +++++ Y PI+ + EI G EAL++W+ P G F+ IAEE Sbjct: 527 IESELRHAIIRNQIHVSYQPILDALSGEIGGYEALMRWNRPGHGLTEPDIFISIAEESGS 586 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I + ++L++ R+ + W P+ I +N++ + LCE ++A++++T +PS Sbjct: 587 IVQLGEWVLQQACREAVRWP-----LPLMIAVNLSPVQFMLPNLCERIEAILAETGLAPS 641 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 R++L +E+ ++ + +R L RL K+G+ + +DDFGT S LS L PFD +K + S Sbjct: 642 RLELEITEAALIRDRDRVMTTLLRLHKLGVHIVMDDFGTGFSSLSNLRSFPFDKIKVDRS 701 Query: 887 L--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + +I+R+II + ++ ++ + + E+ + + GC +Q + P Sbjct: 702 FTGVLEHDAGARSIVRAIIGLGHSLGMPVVTEGVETEMQRRIVVEEGCAQVQGLLLGKP 760 >gi|254228774|ref|ZP_04922197.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio sp. Ex25] gi|262396506|ref|YP_003288359.1| sensory box/GGDEF family protein ScrC (involved in swarmer cell regulation) [Vibrio sp. Ex25] gi|151938721|gb|EDN57556.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio sp. Ex25] gi|262340100|gb|ACY53894.1| sensory box/GGDEF family protein ScrC (involved in swarmer cell regulation) [Vibrio sp. Ex25] Length = 776 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 120/442 (27%), Positives = 219/442 (49%), Gaps = 9/442 (2%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I +K S + + A D LT +PNR +RL L ++ + + VM ID+D +K+ Sbjct: 335 IERRKASEKELAFQAKYDTLTNLPNRSYGSERLALELIRASRSGS-KVLVMFIDLDHFKQ 393 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G VGD++L +R+ ++ + D+LAR+ G+ F +++ ++ A ++ Sbjct: 394 INDSMGHFVGDEILKLSAQRLHQVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 453 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P E +++S+G + + + ++L A++AMY K G + + + Sbjct: 454 SAFNDPFVWNNHEFFLSSSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 513 Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+ + L L Y PII L +IVG EAL++W+ K+G ++ E Sbjct: 514 MNQDLQRYLDLENRLRNAISSQLLELYYQPIIELSSGKIVGAEALMRWNDEKYGFVNPEE 573 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815 F+ IAE+ +I I F +++ R W+ P+F+ +N +S + L ++ Sbjct: 574 FISIAEKNGLIHQIGEFAIQQACRQAAQWQSL---TPLFVSVNFSSVQFRYCDRLLAFIK 630 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ + + +ES++ + +L LR +G LT+DDFGT S LSYL Sbjct: 631 KSLEESGLPSDKFDIEVTESLLFNHDSELLDMLNNLRALGTKLTIDDFGTGYSALSYLQK 690 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S M + ++ II MAK + I+A+ I + + L + C+ Sbjct: 691 FPFDRLKIDRSFMQNMFENDSDRELVNVIIAMAKALNLKIVAEGIEEQRHVDYLKGLNCE 750 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 + Q H + PL LLK+ Sbjct: 751 FGQGFHYSRPLPAKDFEALLKQ 772 >gi|262172271|ref|ZP_06039949.1| hypothetical protein VII_003098 [Vibrio mimicus MB-451] gi|261893347|gb|EEY39333.1| hypothetical protein VII_003098 [Vibrio mimicus MB-451] Length = 684 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 136/574 (23%), Positives = 259/574 (45%), Gaps = 36/574 (6%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG + L Sbjct: 125 LVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGF--EDTQKLLGENLS 180 Query: 455 YIHINDRDN--FRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + I+++ F + L S + R R +E +V+ + S Sbjct: 181 RLFIDEKTKTVFSSQLASLLTERPLICLTGPRCGFERKVQLHAGS--------TSILGSQ 232 Query: 507 GDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 ++ + D E K+ +A D+LTG+ NR F RL + + Sbjct: 233 SQLI----LLQDADEAPKQLSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETP 283 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL Sbjct: 284 LVLLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPE 343 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ A + I P +L + SIG + + +L+NA+ AMY AK Sbjct: 344 HNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAK 403 Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 RG N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++ Sbjct: 404 ERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVR 463 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 464 WKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPE 522 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+G +L++DDF Sbjct: 523 QFGNPQLIDYLEKLLRTTGLDPNCITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDF 582 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 583 GTGYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLSLTVVAEGVETQ 642 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 643 QQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|153869319|ref|ZP_01998959.1| sensory box/GGDEF family protein [Beggiatoa sp. PS] gi|152074149|gb|EDN71035.1| sensory box/GGDEF family protein [Beggiatoa sp. PS] Length = 576 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 125/437 (28%), Positives = 234/437 (53%), Gaps = 7/437 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ E + A D LT +PNR L+RL L + ++ +D+D ++ IND + Sbjct: 132 ETEEQLAYLANYDPLTKLPNRNLLLERLRQTLGRATRTHQ-DIAILALDLDNFQMINDGV 190 Query: 584 GIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G VGD VL + +R+ + + +ARLSG+ F +I S+N +++ A + +++ Sbjct: 191 GHDVGDKVLHEVAQRLTQTVSKIGATVARLSGDEFVVIEESDNLVKDVSEMAQGLLDNLS 250 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700 + + E+ VTASIG + + S ++ +LKNA+ AM AK G N + F+ ++ Sbjct: 251 RSMVIDHHEMVVTASIGISVYPSDGEEAAILLKNADTAMARAKAAGKNTYQFFKAEMNKA 310 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +R+M++ L + N+EL L Y P I L ++VG+EAL++W HP++G S +F+ + Sbjct: 311 AFERLMLENQLRKVLSNNELILYYQPQIELSSGQLVGMEALLRWQHPEFGICSPVKFVPV 370 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE+ +I I ++L + +W+ Q PP+ + +N++S+ + L + ++ ++ Sbjct: 371 AEEMGLIVPIGEWVLRTACQQNQTWQ-QLGFPPVRVSVNVSSRQFFRDNLLQIIKEALAD 429 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 + +P ++L +ESV+M LL ++ +G+ + +DDFGT S LSYL P D Sbjct: 430 SNLNPIYLELELTESVLMAEESGIFELLTEVQNMGVHIAIDDFGTGYSSLSYLKRFPLDV 489 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + AI +II MA ++ +++A+ + + + L + CD IQ Sbjct: 490 LKIDRSFVKDICSDGNDAAITTAIIAMAHSLGLSVVAEGVETQGQLTFLQQQHCDVIQGY 549 Query: 939 HVASPLGFNSILKLLKE 955 + + P+ + + L+ Sbjct: 550 YFSRPICSEKMTQTLQR 566 >gi|158318156|ref|YP_001510664.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Frankia sp. EAN1pec] gi|158113561|gb|ABW15758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Frankia sp. EAN1pec] Length = 804 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 137/563 (24%), Positives = 250/563 (44%), Gaps = 25/563 (4%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDN 463 R + G+ + D V + ILGL+ + W +H DR+ Sbjct: 253 RLHAVLSGTALGMLVADRTGRIVEASDAALEILGLSGHTA---PLAWPLPEIVHPADREA 309 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQ 522 R + RRGR + E R+ D W+ + + GD + + DITE+ Sbjct: 310 VRWLWREA---RRGRSRGECRILRPDGTPTWVALTLSTTWPGVAGDWFG-VAMLEDITER 365 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 ++ E + +A D LTG+ NR FLDRL + + + R + +D+D++K IN+ Sbjct: 366 RRLQEELRFHARHDPLTGLANRAEFLDRLQAVFREAP--PSARVGLCYLDLDRFKMINEG 423 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G VGD +L + RR+G + +AR+ G+ F I++ ++ A + ++ Sbjct: 424 FGYEVGDQLLAEVARRLGGMAVAERTVARMGGDEFMILVPDCGGLDEMTGIARRVLDTLR 483 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P + R++ T SIG + + S+++ A+ A+ AK+ G N +F Sbjct: 484 EPARVDGRDLPATCSIGVVEMAVADTSPSDLVAAADAALTWAKNGGKNRWTAFDPDRGTR 543 Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + + + ++ E L Y PII L + G EAL++WDHP+ G EF+ + Sbjct: 544 EAARGLMSRSMRPGLDRGEFSLAYQPIIDLRHGTVAGAEALLRWDHPRLGPTRPGEFIAL 603 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE+ I + L++LER W +FI +N++++ L + L ++ ++ + Sbjct: 604 AEDSGFIVQLGLWVLERACETARDWPAH-----MFISVNLSARQLREPGLVGAVKKVLDR 658 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P R++L +E+V+M + L L +G+ + +DDFGT S YL +P Sbjct: 659 TGLPPRRLQLELTETVLMDSGGDQVTALHALNDLGVRIVIDDFGTGWSNFVYLSTMPVRG 718 Query: 881 VKFNGSLM----TGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K G + G+ + ++ +I+ A+ + ++ A+ + L G D Sbjct: 719 LKLAGLFVEKLGRGTEPGRDDHLVEAIVEFARRLRLSVTAEGVEEPEQAAALRSFGADLG 778 Query: 936 QDSHVASPLGFNSILK-LLKERF 957 Q P+ + +L+ F Sbjct: 779 QGHLFGEPVPADEFAATMLRRAF 801 >gi|221066763|ref|ZP_03542868.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1] gi|220711786|gb|EED67154.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1] Length = 820 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 145/771 (18%), Positives = 303/771 (39%), Gaps = 51/771 (6%) Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELL-----IWRACSEIALSSSLIIFLFMYLHWNRWH 279 W+ + I+ FG + ++LS+++++ + + + Sbjct: 36 VWLSVAGIATGFGIWATYFIAMLTYSPRIQNSYNTTLVLVSLSAAILLAILSFAVTSGLP 95 Query: 280 AKVGYITFSGIACIAILF----CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335 ++G + I M+ + + ++ + F + Sbjct: 96 QRLGREKGGLLVGCGIAIMHYSGMAAFEVPGRILWNPSMMVISIVLGSLFSTFALPTELR 155 Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ-------------PALVGGLVLIVILI 382 + + + + D+IQ L + + +LI Sbjct: 156 KKTHRTITSGALLLTLVICNHHFAAMATADLIQDQSITVSTNATPVYWLAITVTIACLLI 215 Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + + + E + + + + ++ +A + G ++ Sbjct: 216 FLLTLIVFTLNVWNLHLATREMEHLNSLANAAFEGLLVYE-DGVITMANTSLAKLAGCSA 274 Query: 443 GSMHGPIRNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + L I + + L E + R Sbjct: 275 EELTHR---DLSLIFPDAMARNWLEEKPCIALKTMLHPLSGE--------DSIVVEATSR 323 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + + + + I D+ + K+ I D LTG+ NR++F L +L Sbjct: 324 SVIYAR-KLQKIVAI-RDLRDHIKAERDIHYLFNHDTLTGLINRKAFNQELEKLLQDHGA 381 Query: 561 DD---NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + V+ +D+D++K++ND+ G A GD +L ++ RR + L+ ++ARL G+ F Sbjct: 382 NGRLCGKHLAVLCLDLDRFKEVNDLFGHAAGDGLLQTVARRAQQTLRSDQLMARLGGDEF 441 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREI-TVTASIGFASWTSSKITSSEMLKN 676 II ++ + A + A T++ +IG A + S +++ Sbjct: 442 AIIAPGLSDPQQAERIAQKLFSVFADANRSASTSCATISINIGIAIFPQHGHNSPSIMRC 501 Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A A+ AK G F V DR ++ DL LA+ N EL LVY P+++ E Sbjct: 502 AAKALCQAKADGRGVYRFFDVTLDQQMRDRQRLEHDLRLAIANQELSLVYQPLVQTKSRE 561 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +VG E L++W H K G + S F+ IAEE I I ++L + ++ SW+ + Sbjct: 562 VVGFETLLRWKHQKRGLVPPSVFIPIAEECGQILQIGEWVLHQACKEASSWKRH-----L 616 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I +N+++ L + + + ++ +T PSR++L +E+ ++ +P+ + + +L++I Sbjct: 617 NIAVNVSAVQLHSPQFVQITREILKQTKLPPSRLELEITETALIRDPDIALSTIRQLKEI 676 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETT 912 G+ + +DDFGT S LS+L PFD +K +GS + + I+R+++ + + +E Sbjct: 677 GVRIAMDDFGTGYSSLSHLLTFPFDKIKIDGSFIKSVHVNPRAATIVRAVLELGRGLELP 736 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963 ++A+ + E ++ L+ C+ +Q P L+L + + T Sbjct: 737 VLAEGVETEEELAFLSAESCEEVQGYLFGKPESIERYLQLTTRALQVPRYT 787 >gi|17229798|ref|NP_486346.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131398|dbj|BAB74005.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 611 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 127/442 (28%), Positives = 230/442 (52%), Gaps = 5/442 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ++ ++K +L A D LTG+PNR F+ RL L+ + + N + V+ +D D++K Sbjct: 166 VSARQKLQGKLLDMALHDALTGLPNRILFIRRLGKALNRAKEESNYQFAVLFLDCDRFKV 225 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG VGD++L+S+ R+ L LARL G+ FGI+L + A + Sbjct: 226 VNDSLGHLVGDELLISIAHRLQSCLTPDATLARLGGDEFGILLEDIKDIRMAIQIADYIL 285 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + ++M L E+ + SIG +L++A+ AMY AK G + F + Sbjct: 286 QQLSMSFKLSRYEVFMNVSIGINWGHKGYDQPEYLLRDADTAMYRAKDSGRSRYHVFDPA 345 Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + DL +VE E + Y PII L +I G EAL++W HP G I+ +E Sbjct: 346 MHEEVIKALEKENDLRRSVEKQEFVIYYQPIISLSTGKISGFEALVRWQHPTHGLIAPTE 405 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I IN+++L+ + + W+ P + I +N+++K L + Sbjct: 406 FIPVAEETGLINTINIWVLQSACQQLRIWQSHPGTPNNLTISVNLSAKLFLQTNFLTQVD 465 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +I +T PS ++L +E+V+M N +++L +L++ I L +DDFGT S LSYL Sbjct: 466 QIIKETQIDPSSLELEITETVIMENNNEIKVILQQLKERKIKLIMDDFGTGYSSLSYLHI 525 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PF+ +K + S + ++ + ++ ++I +A ++ + IA+ + + +++L + CD Sbjct: 526 FPFNALKIDKSFVNRMLDNQENMGLVPAMISIAASMGMSAIAEGVETQEQLEQLKSLKCD 585 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 + Q + P+ N ++ + Sbjct: 586 FAQGYLFSQPIEQNLVIDFIAS 607 >gi|331007307|ref|ZP_08330506.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [gamma proteobacterium IMCC1989] gi|330418869|gb|EGG93336.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [gamma proteobacterium IMCC1989] Length = 712 Score = 472 bits (1216), Expect = e-130, Method: Composition-based stats. Identities = 127/561 (22%), Positives = 243/561 (43%), Gaps = 24/561 (4%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W+ D+V + T + +L + + + + Y R L++ + + + Sbjct: 135 GGWELDVVTGHLFWTLETYHLLDTSPEEFNPSVDAGISYFLPESRQIITDALEAAIDHGK 194 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC----- 531 G E + + ++ G ++ GI DI++QK S + Sbjct: 195 G-YDLELETLTTKGRRIDVRTTCS-VTQEEGKTVKLTGIFQDISDQKSSQRQLESVNKAL 252 Query: 532 ---------NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 A D LT +PNR DRL + + V +D+D +K++ND Sbjct: 253 EDVNAELKSIAHYDALTHLPNRTLLADRLRQSILQKKRNGR-SIAVAFLDLDGFKEVNDT 311 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G GDD+L+ + + E L+ D LAR+ G+ F ++L N + + K++ Sbjct: 312 FGHDAGDDLLIHIANNMKETLREVDTLARIGGDEFVVLLDDLVNPKECEFLLQGLLKTVV 371 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 P L ++ ++ASIG + + + ++L++++ AMY AK G N F V + Sbjct: 372 KPFILGTNKVQISASIGVTIYPQDGVDAEQLLRHSDQAMYRAKQSGKNCFHLFDVEQDVA 431 Query: 703 DRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + E ++ A+ N+E L Y P + + E++G EALI+W HP+ G + +F+ + Sbjct: 432 VKTQHAEIGNIQTALNNNEFVLFYQPKVNMQTGEVIGAEALIRWQHPQRGLLFPLDFLPV 491 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 E+ + I +++ + SWR I + +N+ + L + ++ ++S+ Sbjct: 492 IEDSPLSINIGEWVISTALEQMESWRLAGLD--IPVSVNVGALQLQQTNFLKRLENILSQ 549 Query: 821 T-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 P + L E+ +G+ + L+ + + + LDDFGT S L+YL +P Sbjct: 550 YPNTQPHHLGLEILETSALGDVSQVSTLINACQSLDVDFALDDFGTGYSSLTYLRRLPAT 609 Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + +AI+ II +A +IA+ + ++L +GC Q Sbjct: 610 LLKIDQSFVRDMLDDADDLAIIEGIISLASAFGREVIAEGVETVAHGEKLLSLGCKLAQG 669 Query: 938 SHVASPLGFNSILKLLKERFP 958 +A P+ I + +K P Sbjct: 670 YGIARPMPAEEIPQWVKSWQP 690 Score = 84.2 bits (207), Expect = 1e-13, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + W + I + G + G W IH +D +S Sbjct: 4 EAIPQLAWTATPAGEYSYVNQRIVDFCDVPYGDLLG--AGWQSLIHPDDVIRAIDAWNSA 61 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + +FR++ D + W + PM +G I + G DI+++K++ E Sbjct: 62 I-NIAKPFVIDFRLKRRDGIYIWCFCQAFPMFGEHGKITEWFGTYTDISDRKQAEEEQ 118 >gi|126656732|ref|ZP_01727946.1| hypothetical protein CY0110_23876 [Cyanothece sp. CCY0110] gi|126621952|gb|EAZ92660.1| hypothetical protein CY0110_23876 [Cyanothece sp. CCY0110] Length = 873 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 122/434 (28%), Positives = 223/434 (51%), Gaps = 11/434 (2%) Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 + D LTG+ NR+S +L + S V+ ID+D++K IND LG GD +L+ Sbjct: 436 YHDPLTGLANRRSLERKLQQLNYKSINQQPELVAVIFIDVDRFKSINDGLGHQAGDYLLI 495 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 ++++ + E L + L R+ G+ F I L + ++ FA ++++++ P+ EI Sbjct: 496 AMSQLLQEHLNSSEPLGRVGGDEFAIWLKPVKDKQEVVRFAKKLQQALSQPLFWQGHEIY 555 Query: 654 VTASIGFASWTSSKITSS--EMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKE 709 +T ++G + + + E+L+ A++AM+ AK + + + R ++ Sbjct: 556 ITVTVGIS-FEETGDNFHGPELLRYADIAMHRAKELNSSRPQIFEPGMDTQAIQRWHLET 614 Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769 DL L ++ E L Y PII L I G EAL++W+ G +S F+ +AEE +I Sbjct: 615 DLRLGLQQKEFQLYYQPIISLKTGRIAGFEALVRWNSKTRGFVSPGAFIPVAEETGLIVR 674 Query: 770 INLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 + ++L R I W ++ P + + +N++ + + L + ++ ++ R+ Sbjct: 675 LGEWILTEACRQIREWHERFPRNPALIMSVNLSGRQFSEPNLVKQIKTILDSAGIEGDRL 734 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 KL +ES++M N E + LL L+++G+ L++DDFGT S LSYL P DT+K + S + Sbjct: 735 KLEITESMMMNNVEEAITLLNGLKELGLRLSIDDFGTGYSSLSYLHRFPVDTLKVDKSFV 794 Query: 889 TGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 ++K I+I+++II + N+ +IA+ I E +K L + C+Y Q + P Sbjct: 795 ERMEDVKDSDKYISIVQTIISLGHNLNLDVIAEGIETEGQMKVLEFLDCEYGQGYLFSRP 854 Query: 944 LGFNSILKLLKERF 957 L + LL + Sbjct: 855 LSSENAEALLAKEN 868 >gi|325272741|ref|ZP_08139091.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] gi|324102125|gb|EGB99621.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] Length = 896 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 148/581 (25%), Positives = 262/581 (45%), Gaps = 43/581 (7%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + P I ++ + G LP + Sbjct: 335 RRAAANALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRHLGELPAL 394 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L Q EF+ R + + +W + I + N ++ YIG Sbjct: 395 -----ENLNELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DIT+ K + + I A+ DNLT + NR +F+ L A D ++++DID Sbjct: 450 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGEHSMCLLLVDID 506 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L ILAR + N F ++L + A Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDN-TILEDGQGVA 565 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + +++ P+ + + I VTAS+G A + ++KNA LA++ AK G + V+ Sbjct: 566 LQLLRTLDKPMFVDNQLINVTASVGLAYAPLHGSDPASLMKNAGLALHKAKANGKHQVQV 625 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++GLEAL++W+HP+ G I Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELEVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 685 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I +++ + R + M + + IN++ K D +L Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQSCR-MSQELRAGGMGNLHVAINLSPKQFSDPDLVA 744 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859 + +++ + E++ E + L L+ +G++L Sbjct: 745 SISSILKE-------------EALPPHLLELELTEGLLLEASEDTHRQLEELKALGLTLA 791 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S + + + I ++I MA N++ ++A+ Sbjct: 792 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVIAMAHNLKLKVVAEG 851 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I + L R CD Q P+ + + LK R+P Sbjct: 852 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 891 >gi|152997313|ref|YP_001342148.1| PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] gi|150838237|gb|ABR72213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Marinomonas sp. MWYL1] Length = 806 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 126/568 (22%), Positives = 245/568 (43%), Gaps = 25/568 (4%) Query: 400 IFSDGERQ----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455 SD ER + + D + D +L + S ++ L Sbjct: 235 ALSDLERSDSHTKAMIEHAADGILLLDENYQITLVNAAAEHMLKMKSEDLNSKS---LDV 291 Query: 456 IH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H + F IL+S ++ +R++ + IR+ + + Sbjct: 292 LHSPSSWPEFFNILESLEVNSPTTVETIYRMQ---GIELPVEIRLAKYKVQDK--TETLL 346 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP-TVMVIDI 573 + D++E+K++ I A+ D++T +PNRQ D+L + + V+ +D+ Sbjct: 347 LIRDVSERKETEARIHHLAYYDSVTNLPNRQYLADKLYKAIKTKQKNTTSSYSAVVFMDL 406 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SL 628 D++K IND LG VGD +L + ++ L + + AR+ G+ F +L + Sbjct: 407 DRFKTINDSLGHNVGDQLLCCVATQLSSLTEENIVFARMGGDEFAFLLTHVGDDKEKVEK 466 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 I F ++ + E+ +TAS+G + ++ ++ +LK A+ A+Y AK G Sbjct: 467 AINGFVESVMYACQQVKKAGHHEVHITASLGATIFDGNEGSAEAILKQADTALYRAKESG 526 Query: 689 GNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N ++ ++ + L A E L Y P + E++G EALI+W Sbjct: 527 RNTFALYKPEMQAVSDARLEMEKALHHATEFKLFELYYQPQTNDKN-ELIGAEALIRWKD 585 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDL 805 K G IS +EF+ +AEE+ +I I ++L + +W + + IN++ Sbjct: 586 EKKGFISPAEFIPVAEEIGLIVEIGHWVLNEALSQVATWLKEGKWQLSWRMSINVSPIQF 645 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 ++ + K PS + L +E++++ + + ++ +G+ L++DDFGT Sbjct: 646 QQAGFLPMLKTQLEKHDVPPSCVDLEITENMLLNDLSSCLKKMNAIKALGVHLSIDDFGT 705 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L YL +P D +K + S + + AI+ ++I MAK + +++A+ + + Sbjct: 706 GYSSLKYLKSLPIDRLKIDQSFVRDLLTDKSDEAIVHAVIAMAKALNISVLAEGVETLLH 765 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951 L + C Y Q + P+ N + Sbjct: 766 YNRLREIDCFYYQGYYFGHPVPPNEFIA 793 >gi|229171330|ref|ZP_04298917.1| Sensory box/GGDEF [Bacillus cereus MM3] gi|228612149|gb|EEK69384.1| Sensory box/GGDEF [Bacillus cereus MM3] Length = 689 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 125/549 (22%), Positives = 245/549 (44%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G +H +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISMDSIGRITYANPATYEIFGYRYEELHNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + R ++ + + + ++ +R P+ N +I+ + D+T Q + Sbjct: 207 IFKGALQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNAEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L +DN ++ ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNVFL-----NDNTEFALVFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + ++ A ++ K I+ Sbjct: 320 EGDKVLQKVTECLSSLQIDGMHLFREHDDQFVMLIENIT-KERVEIVAKSILKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E L Y P + + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFCLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E +M + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALM-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSKYDVEN 685 >gi|288959257|ref|YP_003449598.1| signal transduction protein [Azospirillum sp. B510] gi|288911565|dbj|BAI73054.1| signal transduction protein [Azospirillum sp. B510] Length = 746 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 125/448 (27%), Positives = 211/448 (47%), Gaps = 12/448 (2%) Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + DI +++ E + A D LTG+ NR DRL + S L ++ ID+ Sbjct: 276 ALETDIALRRRYEEQLYRQAHFDELTGLANRLLTRDRLEQAIVNSRR-GQLTSALLFIDL 334 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K +ND LG GD +L + R+ +++ D LAR+ G+ F ++L + Sbjct: 335 DNFKNVNDTLGHEAGDRLLKAAAGRLSTIIRQGDTLARMGGDEFLVVLPCIAGTDAARGV 394 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + + P + ++ VTASIG A + + +++++A+LA+Y AK RG N E Sbjct: 395 AERVLDAFVPPFRIGGQDHFVTASIGIALFPTDGADGPDLMRSADLALYRAKERGRNRYE 454 Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL------MDEEIVGLEALIQWD 745 F + ++ L LA++ SE L Y PI+R ++ LEAL++W Sbjct: 455 FFTAEINERAQRRIALEGRLRLAIQRSEFVLHYQPILRAGGPAGGEGHRLIALEALLRWR 514 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 P + +F+ +AEE+ +I I +++E + + P + +N++ + L Sbjct: 515 QPDGSLTAPGDFIGVAEEVGLIGEIGAWVIETAIHETVGLFGIGPSAP-RVAVNVSPRQL 573 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 D + +S+ PSR++L +E V+MG L RL GI L++DDFGT Sbjct: 574 RDPSFVAHVVGALSRHGLPPSRLELEITEGVLMGEAPEVAEALHRLCDHGIRLSIDDFGT 633 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PFD +K + ++ A ++ +II MA + IA+ + E Sbjct: 634 GYSSLSYLQRYPFDMLKIDRCFVSEMCGGAAAARLVEAIIAMAHGLGLETIAEGVETEEQ 693 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951 + L GCD +Q + P+ I Sbjct: 694 FRFLRSRGCDLMQGYLLGRPVPLADIAA 721 >gi|327481857|gb|AEA85167.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 686 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 119/451 (26%), Positives = 215/451 (47%), Gaps = 5/451 (1%) Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 I +++ ++++ + D+LTG+PNRQ +L ILD + R V+ + + Sbjct: 231 SIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQSQLDHILDEARRLQR-RVAVLCLGL 289 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D +K IN+ GD +L L R+ E LARL G++F ++L + A+ Sbjct: 290 DDFKGINEQYSYQAGDCLLKGLADRLRESAGRLGALARLGGDQFVLVLSGIEQPYEAAEL 349 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A A+ + PI+L I + A+IG + + ++L+ AE M AK R N + Sbjct: 350 AQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNTEKLLQKAEQTMTLAKSRSRNRYQ 409 Query: 694 SFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + S R +++DL A++ +E +LVY P + I G+EALI+W HP+ Sbjct: 410 FYVASIDSQMRARRELEKDLSEALKRNEFHLVYQPQVDYRQNRITGVEALIRWKHPQGKL 469 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 + F+ +AE+ I I ++L++ + W Q + + +N+++ L +L Sbjct: 470 VPPDLFIPLAEQNGSIIEIGKWVLDQACSQLRQWHAQ-GHTGLRVAVNLSTVQLRHPQLP 528 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + L+ ++L +E+ +M + + + L LR+ G + +DDFGT S LS Sbjct: 529 AMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLHSLRRSGALIAIDDFGTGYSSLS 588 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 YL +P D +K + S + + I+R+II + K++ T+IA+ + L Sbjct: 589 YLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKSLGMTVIAEGVETPEQEAYLIAE 648 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961 GC Q + + PL + LL++ P + Sbjct: 649 GCQEGQGYYYSKPLPARDLDLLLRQSAPFDR 679 >gi|241765471|ref|ZP_04763437.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN] gi|241364756|gb|EER59749.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN] Length = 524 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 127/515 (24%), Positives = 235/515 (45%), Gaps = 9/515 (1%) Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDIL 510 W + + + + ++V A W+ + + +++G Sbjct: 1 WNAAVAADALPGISAEVARHAAHPATPFDATWKVAAPHAPARWVRNLGKIVSHDAHGQPT 60 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 R +G+A D+T Q++ E + A D LTG+PNR L + + + R V Sbjct: 61 RMLGVAMDVTPQREQEELLQKLAHYDALTGLPNRVLLAKLLQDRMAETRAN-GTRLGVAY 119 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D+D +K +ND LG GD +LV + R+ L+ D +ARL G+ F I++ + + Sbjct: 120 LDLDGFKPVNDRLGHGAGDRLLVVVAGRLSRALRPQDCVARLGGDEFVILMPGLASPAEG 179 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + SI+ P +L ++VTASIG+ + + +L++A+ AMY AK G N Sbjct: 180 EQLLQRVMDSISPPYSLEGERVSVTASIGYTLFPLDDADADALLRHADQAMYAAKQAGRN 239 Query: 691 HVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F R+ R + + L A+ E L P + + +VG E L +W HP+ Sbjct: 240 RFHQFDAEQERAQRAQREQGQQLRDALARGEFVLFLQPKVAMQAGVVVGAETLARWQHPE 299 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S + F+ + E + A +++E + + + INI+++ L Sbjct: 300 RGLLSPAAFLPLVESTGLELAFGEWVVETALAQLEQLILAGLQ--LPLSINISARQLQQP 357 Query: 809 ELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + M +++ + ++L +ES + + L RLR +G++++LDDFGT Sbjct: 358 GFADWMLERLARHPQVPATLVELEITESAALYDLPAVTGTLARLRALGMAVSLDDFGTGY 417 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L+YL +P DT+K + S + G +AI++ +I +A++ +IA+ + + Sbjct: 418 SSLTYLRNLPMDTLKIDQSFVHGMMTDPGDMAIVQGVIGLARSFGCKVIAEGVETVEQGQ 477 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 L +MGC + Q +A P+ F+ + P Sbjct: 478 MLQQMGCAHAQGYGIARPMPFDRFAGWVAHWQPPA 512 >gi|228983752|ref|ZP_04143949.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775947|gb|EEM24316.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 689 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 118/550 (21%), Positives = 243/550 (44%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ + +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYKKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKRSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNDFL-----NEKIDFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ A +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPGMHLFREHDDQFVMLIENIT-KERVEVVAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 + E ++ ++ASIG + + + A+ AK +G H + Sbjct: 379 IEEEDVYLSASIGIVMAPRDGEDEKILFQRVDAALEKAKDKGKGHYHFYCSGLDSEREQR 438 Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 I+ L A+E +E +L Y P I + ++I +EALI+W++ + G + ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLHYQPQINIETKKIASMEALIRWENKELGFVPPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|30577817|emb|CAD90949.1| LssE protein [Legionella pneumophila str. Corby] Length = 840 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 149/809 (18%), Positives = 320/809 (39%), Gaps = 69/809 (8%) Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252 I+ A + ++ + ++ GF ++++ G I Sbjct: 54 AIVYNTALCFIVLSLAILFSLNC---YYKSSLILGITVFVFSGLGFSQHILDVNLGIDEI 110 Query: 253 WRACSEI--------ALSSSLIIFLFMY-------LHWNRWHAKVGYITFSGIACIAILF 297 + +++ FL + L R + + Sbjct: 111 FFHHYHAFKNAYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGALGFLVFCLAIL 170 Query: 298 CMSFY-------------YPMVTASIARITLASIVLYYTYFIIYHGMKGYER-AVLLIPA 343 +S Y PM + + S Y+ + A+ + + Sbjct: 171 FISGYFSEIQHAYQWGVKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCS 230 Query: 344 WILIFIWFIGL--WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 + ++ + + + RL+ V G + + L G + LA + Sbjct: 231 FCIMLTFTLLSFEILEKENRLNLSFSIATFVIG-IFVSFLFGLVIRLWQLAKLSAIAAKY 289 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS------------GSMHGPI 449 + E + + D + D + + + ++ + Sbjct: 290 AFLE-VEATLESTADAILVVDKEGNVINYNQRFLDMWRQRINPPRIINYLDIKEEINKQL 348 Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509 N IH ++ + + + +E R++ ++ + + I Sbjct: 349 VNKREVIH---------RINQTIKHPDHQNSFELRLK---GNLYYDCYTQPLKLDED--I 394 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 + + DIT K+ + + D LT +PN+ +D L + + +D + V Sbjct: 395 IGRVWSFRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLRYAMKGAISDKKI-VGVY 453 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++D+D++ +INDV G + GD+++ + +R+ + + IL R+SG++F I++ S + + Sbjct: 454 LLDLDRFTQINDVFGHSKGDEIIKIIAKRLKDCVPVEHILGRISGDQF-IVIASLDEIRE 512 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + + P+ + ++ SIG S+ T +L A++A+ K G Sbjct: 513 AVLGVTRLLAAFHEPVIMNSHCTKMSCSIGVPSYPRDGNTVDVLLPKADIALSRPKIEGR 572 Query: 690 NHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 N+ +S+ ++++ +L A+ E L Y PI+ L + G EALI+W+HP Sbjct: 573 NNSQSYTRDMNTYTLEHILLENELRNAIRKRESVLYYQPILELRSLNLNGSEALIRWNHP 632 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G + +F+ +AEE+ +I I ++L + + I +W+ Q + +NI+ K L Sbjct: 633 RNGLLLPEKFIQLAEEIGIISEIGDWVLRTVCKRIKTWKKQGVN-NLKGAVNISPKHLKF 691 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L + ++S++ I+L +E++++ L L++IGI +++DDFGT Sbjct: 692 RHLPIRINEILSESQVKSESIELELTENILIDKSSGIIDTLNELKEIGIKISIDDFGTGY 751 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S LSYL +P D +K + + + A++++II MAKN+ +IA+ I + ++ Sbjct: 752 SCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIAEGIENKYQLE 811 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLK 954 L +GC Y Q + P+ + ++ L+ Sbjct: 812 ILQNLGCHYGQGYYFYHPMPPDKCMQFLQ 840 >gi|262163932|ref|ZP_06031671.1| hypothetical protein VMA_000372 [Vibrio mimicus VM223] gi|262027460|gb|EEY46126.1| hypothetical protein VMA_000372 [Vibrio mimicus VM223] Length = 684 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 135/574 (23%), Positives = 259/574 (45%), Gaps = 36/574 (6%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG + L Sbjct: 125 LVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGF--EDTQKLLGENLS 180 Query: 455 YIHINDRDN--FRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + I+++ F + L S + + R +E +V+ + S Sbjct: 181 RLFIDEKTKTVFSSQLASLLTEKPLICLTGPRCGFERKVQLHAGS--------TSILGSQ 232 Query: 507 GDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 ++ + D E K+ +A D+LTG+ NR F RL + + Sbjct: 233 SQLI----LLQDADEAPKQLSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETP 283 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL Sbjct: 284 LVLLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPE 343 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ A + I P +L + SIG + + +L+NA+ AMY AK Sbjct: 344 HNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAK 403 Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 RG N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++ Sbjct: 404 ERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVR 463 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 464 WKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPE 522 Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863 + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+G +L++DDF Sbjct: 523 QFGNPQLIDYLEKLLRTTGLDPNCITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDF 582 Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921 GT S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 583 GTGYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLSLTVVAEGVETQ 642 Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 643 QQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|153869654|ref|ZP_01999199.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS] gi|152073882|gb|EDN70803.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS] Length = 581 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 126/546 (23%), Positives = 248/546 (45%), Gaps = 21/546 (3%) Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHI-NDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 T LG+ ++ G LP+ ++ + + + E +++ Sbjct: 29 INQTTLTFLGIQRETVEGSYFWTLPWATPCEEKTQGQLKMAIASAGQGNFAHCEVKIQKH 88 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 + Q + + P+ N +G + + D++E + + + D LTG+PNRQ F+ Sbjct: 89 NGQLTILDFSLTPVKNVHGKTIWILAEGRDLSEHRVLEQRLTDMNLHDQLTGLPNRQLFM 148 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK---- 604 D L L + V+ +D+D++K N LG +GD +L+ + +R+ L Sbjct: 149 DYLDKALMRTKQHQKTTFAVLFLDLDRFKVTNISLGHDMGDWLLMEVAQRLQNCLNNFRG 208 Query: 605 ----------FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 DILAR G+ F I+L + ++ + A+ + K +A P + +I Sbjct: 209 KSFCFTKTFASKDILARAGGDEFLILLENISDITEANRLAVTINKVLAKPFLIDRYKIMT 268 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLC 712 +ASIG + +S+ E+L++A+ AMY AK G + F + R+ I+ DL Sbjct: 269 SASIGIV-YRTSQQEGMELLRDADAAMYRAKALGKSGYAIFSPGMREEAISRLQIEMDLH 327 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+ N L Y P L ++VG+E+LI++ HP+ G I EF+ + E+ +I I Sbjct: 328 QAIVNKNFVLFYQPQTELYSNQLVGIESLIRFHHPENGLILPMEFLPVLEDTGIIIPIGE 387 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L+ + + +W + + + +N++ L + + + + +P ++L Sbjct: 388 WILQTACQQLKTWLEAGLLIE-RVAVNLSPYQFRSKNLLKRVADALENSGIAPESLELEI 446 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +ES+++ + + + L + +GI + +DDFG + L Y+ P D +K + S + G Sbjct: 447 TESLLLKDIDSAIKTLKSFKDMGIRVIIDDFGMGYASLDYIKRFPADGIKIDNSFINGII 506 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 + + I + I MA + T++A+ + L GCD Q A+P+ + L Sbjct: 507 SSPEDATITVATIDMAHALGLTVVAEGVETVEQRDFLRDHGCDLAQGLFYAAPMKNTAFL 566 Query: 951 KLLKER 956 + ++ Sbjct: 567 EWSQQY 572 >gi|163938473|ref|YP_001643357.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] gi|163860670|gb|ABY41729.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Bacillus weihenstephanensis KBAB4] Length = 689 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 119/549 (21%), Positives = 239/549 (43%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G + +I+ F+ Sbjct: 149 FKSLLEYNNDSIISVDSIGRITYANPATYEIFGYRYEELKDQFI--FQFINKEYEKTFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + R ++ + + + ++ +R P+ N +I+ + D+T Q + Sbjct: 207 IFKNALQGRAKQIVAK-KYIHKEGYELYISVRTIPII-VNSEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L + ++ ID+D++ IND G Sbjct: 265 MKTEYLAYFDQLTGLMNRISCTNKLNEFLAENKE-----FALVFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + +L L R ++F +++ + + + A + K I+ Sbjct: 320 EGDQVLKKVTECLRDLKIEDMHLFREHDDQFVMLIENIT-REYVEEVAQTILKKISGHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G + + R R Sbjct: 379 IEEEDVYLSASIGIVMAPEDGMDEKMLFQRVDAALEKAKEKGKGYYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E L Y P I + ++ +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFSLYYQPQINIETGKMASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ I W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVHQVCEQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 PHLLAIEVTEGALI-HKDVSKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A + +IA+ + I+ L +Q Sbjct: 617 RSFMEGIYKDERDTNITAAIIHLAHTLGLNVIAEGVEKAEQIQFLKEKNVKIVQGYFYNR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSIYDVEN 685 >gi|218234545|ref|YP_002365345.1| sensory box/GGDEF family protein [Bacillus cereus B4264] gi|218162502|gb|ACK62494.1| sensory box/GGDEF family protein [Bacillus cereus B4264] Length = 689 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K S Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E IIA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|159186248|ref|NP_356033.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|159141382|gb|AAK88818.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 779 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 154/778 (19%), Positives = 302/778 (38%), Gaps = 59/778 (7%) Query: 191 YRGIIIGVASLLAIFLTIF---YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPS 247 +I + + A F + A L + F + Sbjct: 18 LLAAVICLLGMFAFFHLLLRADESPAGRKPYWVLVAAFAAGLSVWATHFVAMLAYRGAVP 77 Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFC--------- 298 + AL+ R A + + +++ Sbjct: 78 IGYDFFFTALSAALAVFGFWLAL----VARSQAIYSSLIVGTLVTLSVAVMHFVGMAGMD 133 Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 ++ + + S + F ++ + ++R A I M+ Sbjct: 134 VAATISYRWGPVFGGSAVSWAAFVLAFFLFRRLASWKRIAAPAGAAIFGICALHFTAMSA 193 Query: 359 T---------KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409 T +++ + ++G + + LI F L Y Sbjct: 194 TVLTPDPSMSGPDPDNVGRLIMIGAISGVTFLILFATAVAALVDRYLVD--------LKG 245 Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469 V + D + V A +LG S+ G +D Sbjct: 246 LVDATLDGLAVVR-DGRIVELNTRFAGLLGREEASLVGRN--------PDDLFKAVDGQP 296 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 +++ R ++ +R Q + +R + G + I D+TE++++ I Sbjct: 297 TYLS-RPAPVEA---IRERGGQAQVFELGVRTI-EYRGRPCEVMAI-RDLTEKREAQREI 350 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+ NR F RL +D D+ ++ +D+D++K +ND+ G A GD Sbjct: 351 EYLARHDVLTGLSNRTMFQTRLHQQIDNG--DEEDEFALLALDLDRFKAVNDIFGHAEGD 408 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 VL + + E + D++ARL G+ F I+ + + A + A+ +N++ Sbjct: 409 RVLKKVAAILDECARAGDVVARLGGDEFVILTARHTKADEARLLAETILGMFALKMNVVN 468 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMI 707 V SIG A + ++ A+LA+Y AK G + + + +R + Sbjct: 469 DPTAVGVSIGIAVFPRDGQDHESIMHAADLALYRAKMGGRGILAFYDPLMDQEARERRQL 528 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 + DL LA+ EL L Y P++ + ++VG EAL++W HP G + F+ IAEE +I Sbjct: 529 ETDLRLAINRDELVLNYQPVLSVECGQVVGYEALVRWQHPTRGVVPPDVFIPIAEESGII 588 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 ++ ++L R +W P + I +N++ L + ++ +T SP+R Sbjct: 589 ISLGEWVLREACRQASTWA-----PHLKIAVNVSPLQFSLANLGHVVCTVLMQTGLSPNR 643 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 ++L +E+ ++ + + + ++L +L+ +G+++ +DDFGT S LS L PFD +K + S Sbjct: 644 LELEITEAALLKDRKATLVILNQLKALGVAIVMDDFGTGYSSLSNLQSFPFDKIKIDRSF 703 Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 + +E AI+R++I + ++++ + A+ I + + + GC Q P Sbjct: 704 IAAMSEDDNARAIVRAVIGLGRSLDLPVTAEGIETDAQYRMVVDEGCAQAQGYLFGRP 761 >gi|229148886|ref|ZP_04277132.1| Sensory box/GGDEF [Bacillus cereus m1550] gi|228634585|gb|EEK91168.1| Sensory box/GGDEF [Bacillus cereus m1550] Length = 689 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T L ++++ ++ ID+D++ +IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L L R ++F +++ + + + A ++ K+I+ Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G H + R R Sbjct: 379 IKEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ + + W ++ + I +NI+++ L E + ++K S Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E IIA+ + + I+ L +Q + + Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|330972079|gb|EGH72145.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 732 Score = 472 bits (1215), Expect = e-130, Method: Composition-based stats. Identities = 128/587 (21%), Positives = 229/587 (39%), Gaps = 18/587 (3%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ +I + + R S D + D ++ I Sbjct: 147 VLQDLAVMIIERMELRRLTLENEDSHSRFMNITSTSPDAIICSDSKNRIISWNNSAEIIF 206 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495 G S G + I R L + D + Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAVHRDGHTIPI 264 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + S G+ I DIT++ ++ + + A D+LTG+ NR + R+ Sbjct: 265 ELSLS-QWTSAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D L +++ID+D +K +ND LG A GD VL + R+ E + +++RL G+ Sbjct: 323 -----DAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGD 377 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F + L + K + + I PI + I + ASIG + S +ML Sbjct: 378 EFVVFLSETADPDKAIKLGLELIAVIEEPIEFEDNSIYIGASIGVSVRCGSDYDEEQMLG 437 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 438 NADLALYQAKSDGRSPVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G EALI+W+HP +S + F+ E + + ++L WR+ Sbjct: 498 RITGAEALIRWNHPTLCVVSPAVFLPALEASLLAVPVGEWILRSACEQAAQWRNTGCEE- 556 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 +G+ + DDFGT + LS L P +K + S ++G ++K I+ +++ +A Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNL 676 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERF 957 + A+ I + CD Q P+ + + + Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTKRYISSHN 723 >gi|296536548|ref|ZP_06898634.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957] gi|296263125|gb|EFH09664.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957] Length = 475 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 120/469 (25%), Positives = 218/469 (46%), Gaps = 8/469 (1%) Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 R A + ++ + G R + I DI+E+K + E + A D LT +PNR Sbjct: 10 RDAGGRERTLLSTAVAVRGGRG-AGRVVFIGLDISERKAAEERMRHLAEHDPLTDLPNRL 68 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 F RL L + + + +DID++K +ND LG VGD +L++ RI L+ Sbjct: 69 LFGLRLNAALAKAREGHSPGFALHCLDIDRFKTVNDRLGHPVGDRLLLAAVERIRGCLRR 128 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 D LAR+ G+ F +I + A + K + P + I SIG A Sbjct: 129 ADTLARIGGDEFAVIQAEVSGPQDAISLAARLVKVMQAPFRIDGSVIESGLSIGSALGLL 188 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723 + + + A++A+Y AK G F R ++ +L +E EL+L+ Sbjct: 189 HGGHAELLQQRADVALYRAKAEGRGGAVLFDPGMETALQQRREMEAELRRGLEAGELHLL 248 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P L VG EAL++W+H G I + F+ +AEE M + ++L + Sbjct: 249 YQPKFCLQTGRPVGCEALLRWEHAARGAIPPALFVPVAEEAGMAATLGRYVLRAACGQAL 308 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 WR+ + + +N+++ ++ ++ ++++ P+ +++ +E V + N E Sbjct: 309 RWRETG--LALPVAVNLSAMLFASDQAVALVREALAESGLPPALLEIELTEGVFIRNAEA 366 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST---EKRIAILR 900 +R L L ++G+ + LDDFGT S L+YL +PFD +K + + + T I+ Sbjct: 367 ARQALQALHRLGVRVALDDFGTGYSSLAYLQRLPFDVLKIDRAFVRDLTAPEHGSARIVE 426 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 +I+ +A + ++A+ + + L R+GCD +Q + P+ ++ Sbjct: 427 TILRLAHGLGAKVVAEGVETPEQLAALRRLGCDAVQGFLLGRPMAAGAV 475 >gi|146338270|ref|YP_001203318.1| putative diguanylate cyclase/phosphodiesterase (EAL) [Bradyrhizobium sp. ORS278] gi|146191076|emb|CAL75081.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) [Bradyrhizobium sp. ORS278] Length = 789 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 126/684 (18%), Positives = 283/684 (41%), Gaps = 27/684 (3%) Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 RW + + + ++ + ++ + Y R Sbjct: 103 RWEIRYQIGAMLYALVLGVWCVVAVVDNSDPVVH-----LIAISVTLCYMSAGAGRTYGR 157 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 + IL+ + + +A+ + A + + I + + + Sbjct: 158 PWIF-HVQILLACGPLAMALALHG-SPYYMGMAAFCVLFFMSLKHISTNLQRIFVQAFVA 215 Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 +G + ++ A+ + + ++ L + + I Sbjct: 216 REGEAALAKQFDTALNNMPHGLCMFGPDGRLAVMNHRFGEMMSLPEDILQRGGKA-ADII 274 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF---HWMIIRIRPMSNSNGDILRYI 513 + + + + +D + +PM++ + Sbjct: 275 NACVISGAISAPSGRMILSEIEHTKTHNIITSDPDIVRDRSLSWTFQPMADG-----GAV 329 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + DITE++ + I A D LT +PNR SF D + +L + L ++ +D+ Sbjct: 330 VLLEDITERQHAEARISHLARYDELTTLPNRVSFRDEIERLLKIPQRHGELS-ALLFVDL 388 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K++ND LG GD +L +++ R+ ++L+ D +AR G+ F + + ++ A Sbjct: 389 DRFKQVNDTLGHPCGDQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAVL 448 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + ++ + + + AS+G A T+ I++ +LKNA++A+Y AK G Sbjct: 449 ARRIVDQLSERYKIDNHLVEIGASVGIAM-TAPGISADTLLKNADMALYRAKAEGRGTFC 507 Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 FR ++ ++ DL A+ + E L Y P++ L +I EAL++W+HP G Sbjct: 508 FFRDELAQTVEARRILELDLRKALASEEFELFYQPLVNLKSGKISTCEALLRWNHPVRGT 567 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S + + +AE++ +I + ++L + + + W + + + +N + + ++ Sbjct: 568 VSPVDIIPVAEDMGLIVDLGRWILRKACLECMKWPEA-----VSVAVNFSPQQFHQRDVL 622 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ + + P R+++ +ES ++ N + + +L +L +G+ ++LDDFGT S LS Sbjct: 623 SEVRYALEVSGLPPHRLEIEITESSLLRNTQLTHDVLSQLHMLGVRISLDDFGTGYSSLS 682 Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 YL P + VK + S + G R +LR + ++ ++ +++ + I ++ ++ Sbjct: 683 YLHNFPLEKVKIDRSFLEGIDSDRPLTLLRGVARLSADLGMSVVVEGIETNEQLELVSVD 742 Query: 931 G-CDYIQDSHVASPLGFNSILKLL 953 G Q + P+ I +LL Sbjct: 743 GTVTEAQGYLFSRPVPAVRIRQLL 766 >gi|313496702|gb|ADR58068.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida BIRD-1] Length = 896 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 146/581 (25%), Positives = 262/581 (45%), Gaps = 43/581 (7%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + P I ++ + G LP + Sbjct: 335 RRAAASALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPAL 394 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L Q EF+ R + + +W + I + N ++ YIG Sbjct: 395 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I D+T+ K + + I A+ DNLT + NR +F+ L A D ++++DID Sbjct: 450 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGESSMCLLLVDID 506 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L ILAR + N F ++L + + A Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLL-DDTSLEDGQGVA 565 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ P+ + + I VTAS+G A + + ++KNA LA++ AK G + V+ Sbjct: 566 QQLLCTLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQV 625 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++GLEAL++W+HP+ G I Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 685 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I +++ + + +A + + + IN++ K D +L Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQAC-CMSQQLRKAGLGNLHVAINLSPKQFSDPDLVA 744 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859 + ++ + E++ E + L L+ +G++L Sbjct: 745 SISTILKE-------------EALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLA 791 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S + + + I +++ MA N++ ++A+ Sbjct: 792 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 851 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I + L R CD Q P+ + + LK R+P Sbjct: 852 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 891 >gi|116048784|ref|YP_792416.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14] gi|115584005|gb|ABJ10020.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14] Length = 823 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 123/586 (20%), Positives = 241/586 (41%), Gaps = 15/586 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++++L Q ++ + ++ ER + + GD V D P Sbjct: 219 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 278 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490 + G P+ + + + R+ +++ + GR + +R D Sbjct: 279 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 337 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + P+ G+I + + +D+T +++ + + A D LTG+ NR+ F R Sbjct: 338 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 396 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L+ + R +M +D+D++K +ND G A GD++L + + + L+ D LA Sbjct: 397 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 455 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ FGI+L + + + + + T S+G T Sbjct: 456 RLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 515 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726 E L++A++A Y AK +G N V+ F R + + + LA+E L P Sbjct: 516 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 575 Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 I+ L + + +E L++ + F+ AE ++ I+ +++E R ++ Sbjct: 576 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 635 Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 PI IN++ + D + + L ++ P I +E+V + N Sbjct: 636 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 695 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + + L+ G +LDDF S YL ++P D +K +GS + A+++ Sbjct: 696 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 755 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I + + IA+ + ++ L +G DY Q + +PL F+ Sbjct: 756 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 801 >gi|260222135|emb|CBA31398.1| hypothetical protein Csp_F37330 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 666 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 133/587 (22%), Positives = 255/587 (43%), Gaps = 19/587 (3%) Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 + + L I + + + + R A+L + ++ +D + Sbjct: 97 VSMNMQLSGIRLTDGRMAMLCESRIIEPDRPEAL-RSVEALLHTDVMITLYDREGVVLYR 155 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 P S+ D + +L + L Sbjct: 156 NPAA-------RESVPNLNMRMAERF--QDIEALERMLAMLELHGEATLTLP---AHTTR 203 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 W + +R ++ + D+T K + + A D+LTG+PNR + R Sbjct: 204 NLRWHEVSVRLCRDAVPGRDAVLMSEVDVTAIKHAQDHSQYLARHDSLTGLPNRSHVMQR 263 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L ++ ID+D +K IND LG A GD +LV + R+ + + D++A Sbjct: 264 FADTLRDMGE-GATEAALIYIDLDHFKDINDTLGHAAGDALLVQVAERLRAITRSSDMVA 322 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ F I+++S N ++ + ++A PI++ E+ VT S+G + + Sbjct: 323 RLGGDEFLILMVSHNIREEVDLVRRRLSSTVAQPIHIHGAEVIVTPSVGVSFYPEHGKEL 382 Query: 671 SEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728 +L+NA+LAMY AK G N + F ++ R+ ++ +L A+ E L Y P + Sbjct: 383 DTLLRNADLAMYSAKESGRNALNIFESPMAQRVQQRLELETELRHALTRQEFELYYQPRV 442 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 + ++ G EALI+W+HP+ G + F+ E MI A+ ++ E+ AR + W + Sbjct: 443 DVATGQVRGAEALIRWNHPQRGLVGPDAFIPTCESTGMINALGDWVFEQAARQQVQWARE 502 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + I +N++ + D EL + +++ T P+R++L +ES+++G + L Sbjct: 503 GLD--LKISVNLSPRQFRDPELLNRLARIVTATAAQPARLELELTESMLLGVAPHTHETL 560 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN 908 LR++G S+++DDFGT S L+YL P +K + + + E + I+ M + Sbjct: 561 DDLRRMGFSISVDDFGTGYSNLAYLNRFPIQVLKVDKTFVQDI-EANRPVAELIVSMCRL 619 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ I+A+ + ++ + G Q A PL + ++ ++ Sbjct: 620 MQLHIVAEGVETPAQLEWVQTQGIGQYQGYLFAKPLPATAFVERVRA 666 >gi|299132025|ref|ZP_07025220.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Afipia sp. 1NLS2] gi|298592162|gb|EFI52362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Afipia sp. 1NLS2] Length = 798 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 164/776 (21%), Positives = 306/776 (39%), Gaps = 47/776 (6%) Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242 + I G+ S F+ + A ++ + + G L + Sbjct: 46 RHIWLAVSAVAIGFGIWST--HFIAMLAFSPGIPSGYNIALTAISLVVAMLLTGGGL--V 101 Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302 V + G I + + T IA + F Sbjct: 102 VAMIPGWSAGPALGGAIVAGGIAAM----------------HYTGMAAFEIAGIVVWDFG 145 Query: 303 YPMVTASIARITLASIVLYYTYFII--YHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 + + A + + + + + L Sbjct: 146 MVAWSIVLGATLGAIALPVGLHDQSEKWKAAGAALLTLAICSHHFTGMAAVTILPDPNIA 205 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 + L + + I + V + + +R + + + Sbjct: 206 VPATALPPALLAILVCAASLTIILLSLTAVALDVRDRRRAELETDRMRGLANAAVEGLVV 265 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D VT A ++GL+S G L +D + + + Sbjct: 266 CDGDT-IVTVNESFAQLVGLSSAMPVGNK---LDLCLPDDTAR-----ERLLTSSNQPM- 315 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 E +R D + +RP+ + G + + D+ +KK+ + I A D LT Sbjct: 316 -EVTLRHHDGSMIPAEVILRPI-DYAGRPHHVVAV-RDLRARKKNEQHIRYLAHHDALTS 372 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR SF + L D+ V+ +D+D++K++ND+ G A GD VL ++ RIG Sbjct: 373 LPNRTSFNAAIDEALAALPKDNK--LAVLCLDLDRFKEVNDLFGHAAGDRVLQTVANRIG 430 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 LL I++RL G+ F I+L + + FA + ++ + + E + +++S+G Sbjct: 431 GLLGSGQIMSRLGGDEFAILLPNIARADAARRFAENVLAALRLKGDTPETD-GISSSLGI 489 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS 718 A + +L +A+ A+Y AK G N F +R MI+ DL AV + Sbjct: 490 ALYPDDANDRQMLLSHADTALYRAKTEGRNTYRFFEAKMGAEVRERRMIEHDLRHAVARN 549 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 EL LVY P + + + G EAL++W HP G++S + F+ IAEE I I ++L Sbjct: 550 ELRLVYQPQHDIQNNIVTGFEALLRWKHPTRGDVSPATFIPIAEEAGAILGIGEWVLRTA 609 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 R+ SW P+ I +N+++ + D + ++ +T SP+R++L +E+ ++ Sbjct: 610 CREAASWPQ-----PLTIAVNVSTLQIYDPNFAHLVHRILIETGLSPNRLELEITETALV 664 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRI 896 + R+ L L +++ +G+ + +DDFGT S LS L PFD +K +GS + S E+ Sbjct: 665 RDLNRALLTLRQIKALGVHIAMDDFGTGYSSLSNLRAFPFDKIKIDGSFIKSVDSNEQAA 724 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 I+R+++ + + + ++A+ + ++K L CD IQ + P + Sbjct: 725 TIVRTVLGLGRGLGLPVLAEGVETAGEMKFLREQNCDEIQGYLIGRPAAIENFRHF 780 >gi|229525306|ref|ZP_04414711.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv. albensis VL426] gi|229338887|gb|EEO03904.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv. albensis VL426] Length = 684 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 132/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182 Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +I + F + L S + + R +E +++ + + Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234 Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + D E K+ +A D+LTG+ NR F RL + + Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL ++ Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + I P +L + SIG + + +L+NA+ AMY AK R Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++W Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+G +L++DDFGT Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|220935020|ref|YP_002513919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Thioalkalivibrio sp. HL-EbGR7] gi|219996330|gb|ACL72932.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) [Thioalkalivibrio sp. HL-EbGR7] Length = 1301 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 133/593 (22%), Positives = 255/593 (43%), Gaps = 22/593 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 T I + S+ +R A+ ++ D + G Sbjct: 607 ITDITERKEAEAALRKAHSETQRFREALDYVSSFIYMKDTQSRYTYANRATLELFGTNDH 666 Query: 444 SMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + G + + + +D V + + E + P+ Sbjct: 667 DLPGSDDFRFFS----DSTAHRLREIDRHV-FLGEQTSEEIEAVDPGGHRRVYLEIKTPI 721 Query: 503 SNS--NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + +++ +GI+ DIT K+ + A D LT +PNR DRL + + Sbjct: 722 YDETERDEVIGLLGISTDITAIKEHERQLEHIAHFDALTNLPNRVLLADRLHQAMAQAVR 781 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 + V +D+D +K IND G AVGD +L+++ +++ E+L+ D L+RL G+ F + Sbjct: 782 RGH-HLAVAYLDLDGFKAINDRYGHAVGDKLLMAVAQQMHEVLREEDTLSRLGGDEFVAV 840 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAEL 679 L+ + + + A P+++ RE+ ++AS+G + ++ + ++L+ A+ Sbjct: 841 LLDLADVEACVPLLTRLLAAAARPVSIEGRELRISASLGVTFYPQAEQIEAEQLLRQADQ 900 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMY AK G F RS R + + A EN E L Y P + + ++G Sbjct: 901 AMYQAKLAGKGRYHVFDAELDRSVRTHHESLERIRSAFENDEFVLHYQPKVNMRSGAVIG 960 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EALI+W HP G + +F+ + E+ + + +++ R + + SW+ + + + Sbjct: 961 AEALIRWQHPDKGLLPPGDFLPVIEDHPLAIELGEWVITRALQQMASWQTAGLV--LPVS 1018 Query: 798 INIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +NI + L + ++ L+ SP ++L E+ +G+ LL + R IG+ Sbjct: 1019 VNIGASQLRQDTFVSRLRTLLDGFPEISPGSLELEILETSALGDLALVTRLLDQCRAIGV 1078 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 ++ LDDFGT S L+YL +P VK + S + + +AIL ++ +A +I Sbjct: 1079 NIALDDFGTGYSSLTYLKRLPAGVVKVDQSFIRDILMDPEDLAILDGVLGLAGAFNRQVI 1138 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-----RFPLVKN 962 A+ + L R+GC+ Q +A P+ ++ +K +P ++ Sbjct: 1139 AEGVETVEHGDMLLRIGCELAQGYGIARPMPAEALHDWVKRWRPEPHWPRLRR 1191 Score = 135 bits (340), Expect = 4e-29, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 2/149 (1%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447 Q + + R A+ G+GD VWDW++ + V + ++LG + Sbjct: 347 QLTVDIRDREARLSDSEYRWRFALEGAGDGVWDWNLEDNTVYFSRRWKSMLGFEDQEIGQ 406 Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSN 506 + W +H +D D+ L ++ RG E R+R D + W++ R + + Sbjct: 407 GLDEWQRRVHPDDLDSTLAELKGYLNGDRGEYVSEHRMRCKDGSWKWILDRGMVVSRDGQ 466 Query: 507 GDILRYIGIANDITEQKKSL-EGILCNAF 534 G LR IG DI+ QK A Sbjct: 467 GRPLRMIGTHTDISGQKALEAAREEILAR 495 Score = 73.4 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 6/137 (4%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIATILGLASGSMHGPIR 450 R +V+++ + D + I I ++ + Sbjct: 484 ALEAAREEILARLQTITSRVPGVVYEFRLQADGRSCFPYASEAIRQIYRVSPEEVKTDAS 543 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 +H +D D + + ++E+RV+ D W+ P +G L Sbjct: 544 AVFAILHPDDYDAVVESIQHSARHLT-PWRHEYRVKFPDGTVRWLYGDSLPHREPDGSTL 602 Query: 511 RYIGIANDITEQKKSLE 527 Y G DITE+K++ Sbjct: 603 WY-GFITDITERKEAEA 618 >gi|92116800|ref|YP_576529.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis X14] gi|91799694|gb|ABE62069.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis X14] Length = 898 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 140/582 (24%), Positives = 261/582 (44%), Gaps = 21/582 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILG 439 + + + V S+ + + + V ++ + TIL Sbjct: 314 VFLIALFEDVTERKSLSRELENAKKFLETVVDNIPVSLIVQCASDGHYLLANRRAETILN 373 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 G + D D G L E +R ++ + R Sbjct: 374 RRREDAIGLTAS--DIFGPRDAKLIVAR-DEMAVGNGGLLTEEHPIRTSEG-LRLFLTRR 429 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + +G+ I D+T+++++ + A+ D LT +PNR +FL L+ +++ + Sbjct: 430 VTVRGDDGEPQYLIKTNEDVTDRRQTESRMAHMAYHDGLTDLPNRTAFLKALSQMIE-AC 488 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 + V+ +D+D K+INDV G AVGD +L+ + RRI ++ARLSG+ FG+ Sbjct: 489 QGTDDEFAVLSLDLDGLKEINDVFGHAVGDSLLIEVARRIQSAAH-GGLVARLSGDEFGV 547 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I+ A + ++ + ++ + + G + + + +L NA + Sbjct: 548 IIDG-KQPAVGQALAQQIVAAMVPEFLIDDKSVRTGLTTGISLFPRDGTDPASLLANAGV 606 Query: 680 AMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM----DE 733 A++ AK RG V + DR ++ DL A+ N EL L Y P R D+ Sbjct: 607 ALFRAKAKSRGSICVFEPEMDRQIRDRRVLHRDLSNAMRNGELSLHYQPQARTGRKLVDD 666 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 +++G EAL +W HP G + +F+ +AEE +I A+ ++L R+ SW P Sbjct: 667 DVIGFEALTRWSHPTRGFVPPGDFIPLAEESGLIVAMGEWILREACREAASWPS-----P 721 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I +N++ + +L + +++ +T +PSR++L +E V++ + ERS LL RL+ Sbjct: 722 KQIAVNLSPVQFIHGDLVGLVHSILLETGLNPSRLELEITEGVLIEDFERSLALLRRLKA 781 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIET 911 +G+ + +DDFG+ S LSY PFD +K + + G + AI+R++I + ++ Sbjct: 782 LGVRIAMDDFGSGYSSLSYFQAFPFDKIKIDRGFVMYLGRNPQSAAIVRAVIGLGHGLDV 841 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 +I+A+ + + + L GCD +Q + P L+ Sbjct: 842 SIVAEGVETQEQLGFLADEGCDAVQGFFIGKPEPIAHYATLV 883 Score = 38.4 bits (88), Expect = 6.6, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 47/178 (26%), Gaps = 24/178 (13%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG----YFSQGIFSDGERQSLA---VLGS 414 L D G+ + GF + + A + R + + Sbjct: 41 LSTDNHITGTDAGVAWEIFTGGFIAVSFLAAAAIWVTSVLRKARRSLRRHAFVSSGLNNL 100 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFV 472 V D + + I GL + + + D R +LD+ Sbjct: 101 NQGVVMTDSRQRIIFCNDRYLEIYGLLRSDIRPAMTD------PELGDLRRARGVLDACS 154 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI--LRYIGIANDITEQKKSLEG 528 +R+ A + + R ++ + + D +EQ+K Sbjct: 155 DQF-------YRLSNACDGLFTELPDGRLIAVKRFKLPNGGSVATHEDCSEQRKLARQ 205 >gi|120556297|ref|YP_960648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Marinobacter aquaeolei VT8] gi|120326146|gb|ABM20461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinobacter aquaeolei VT8] Length = 867 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 139/562 (24%), Positives = 254/562 (45%), Gaps = 15/562 (2%) Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 E LA +G+ + D V I G A + G L Sbjct: 187 RRSAEELRLAATVFEHAGEGILVTDTQGHIVNVNRAFTVITGYAREEVVGQTPRLLESDR 246 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +D + ++T+ + + E R + ++ I + + G+I Y + + Sbjct: 247 YDD-EFYQTVGQALREH--DYWHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFS 303 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT K++ + + A D LTG+PNR DRL + + + V+ ID+D +K Sbjct: 304 DITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRR-GMHLAVVFIDLDGFK 362 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 K+ND G AVGD +L L+RR+ ++L+ D LARL G+ F IL+ +S + Sbjct: 363 KVNDQHGHAVGDKLLSVLSRRMTQVLREDDTLARLGGDEFVAILVDLPDSSVSVPILERL 422 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + P+ + + V+ASIG + + + + ++L+ A+ AMY AK G N F Sbjct: 423 IEVASQPVPIGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFD 482 Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R + + + A+ N + L Y P + + E++G EALI+W HP G +S Sbjct: 483 TEKDCTLRTRHEGFDSIENALANGQFLLYYQPKVNMRTGEVLGAEALIRWQHPTRGLLSP 542 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 + F+ I E + + + +E I WR P I +NI ++ LL + + Sbjct: 543 ASFIPIIENHPLGIDVGEWTIEAALTQIEVWRKAGLHVP--ISVNIGARHLLQPDFIMHL 600 Query: 815 QALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++S+ P ++L E+ + + + L+ + ++G+ LDDFG+ S L+YL Sbjct: 601 RGMLSRHPGARPQDLELEILETSAVEDFVQVSQLMAQCGRMGLRFALDDFGSGYSSLTYL 660 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P +K + + IAIL +++ +A++ IA+ + + L R+G Sbjct: 661 KRLPAYLLKIDQGFIRDMLEDPDDIAILDALLALARSFGRNCIAEGVESIQHGEMLLRLG 720 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C++ Q + P+ + + L Sbjct: 721 CEWGQGYAIGHPMPAHEFEQWL 742 Score = 76.1 bits (186), Expect = 3e-11, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 8/158 (5%) Query: 382 IGFTVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIAT 436 + ++ + Q + S +R+ LA G +++ + D + I Sbjct: 44 LTTATVEDITDLKRVEQALNSMRLQREELASHVPG-MLYQYRLRPDGSSHFPYASAKIRE 102 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I G+A + +H DRD + + G E+RV+ D + W+ Sbjct: 103 IYGVAPEDVVEDATPAFAALHPEDRDRVHETIQAS-GQSLALWHDEYRVQFPDGRVIWVE 161 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 P + +G IL + G +D+T +++S E + A Sbjct: 162 GEASPEAMPDGSIL-WHGYIHDVTSRRRSAEELRLAAT 198 >gi|229520944|ref|ZP_04410366.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM 11079-80] gi|229342177|gb|EEO07173.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM 11079-80] Length = 684 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 132/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182 Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +I + F + L S + + R +E +++ + + Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234 Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + D E K+ +A D+LTG+ NR F RL + + Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL ++ Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + I P +L + SIG + + +L+NA+ AMY AK R Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++W Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+G +L++DDFGT Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|110632976|ref|YP_673184.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Mesorhizobium sp. BNC1] gi|110283960|gb|ABG62019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Chelativorans sp. BNC1] Length = 574 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 118/561 (21%), Positives = 237/561 (42%), Gaps = 21/561 (3%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 E + V+ D V I+G + + Sbjct: 4 SLEALYQVLTAIPYPVFVKDENHRWVLVNQAFCEIMGHTREELLYKTDYDFV---PAAQA 60 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRYIGIANDIT 520 + +D V + E + A + R + +G + I +DIT Sbjct: 61 DVFRAIDDHVFATGEPNENEEVLTDASGTVRVITTRKCRVELPTPDGPRPFIVAIFSDIT 120 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 +++ +A D+LTG+ NR +RL L + + + ++D+D +K++N Sbjct: 121 AYREAEARARYHAHHDSLTGLANRMHLGERLQEELIEA-RAKGTQLALFLLDLDGFKQVN 179 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G A GD++L + R+ +++ D++ARL G+ F ++ + ++S + A + Sbjct: 180 DRYGHAAGDELLQIIATRLKRIVRGRDVVARLGGDEFCVVQVEPDDSSAVDALAERILGV 239 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 ++ PI VTASIG +++ +T ++L+ A++A+Y K G + Sbjct: 240 LSEPIVAEWGTARVTASIGISAFPGDAVTQEDLLRYADIALYSVKGSGRASYARYDKQKD 299 Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + L A+ N E+ L + P++ +D EAL +W HP+ G I F+ Sbjct: 300 GVSNSIGSLAPALEAAIANEEITLAFQPLVSTLDGTPRAFEALARWHHPELGAIPPGVFI 359 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AE ++ A+ +L + W + + +NI+ + +L E ++ ++ Sbjct: 360 PLAERKGLMPALGRLVLRQACDAAAKW-----DSDLQVRVNISPVQVESGDLVEVIRDVL 414 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T R+++ +E+V++ + + RL+ +GI + LDDFG+ + L L PF Sbjct: 415 KETRLPAQRLEIEVTEAVLLNEKSENLHIFHRLKMLGIKIALDDFGSGWTSLDVLRRFPF 474 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S + + A++R+++ + K ++ I A+ + + L MGCD +Q Sbjct: 475 DRLKIDRSFVANMETDPRAAAVVRAVLSIGKALDLPITAEGVERREQLDVLRTMGCDEVQ 534 Query: 937 DSHVASPL------GFNSILK 951 + P + K Sbjct: 535 GHFLGRPKNIRGNGPVDEAEK 555 >gi|220935016|ref|YP_002513915.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. HL-EbGR7] gi|219996326|gb|ACL72928.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. HL-EbGR7] Length = 648 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 118/452 (26%), Positives = 226/452 (50%), Gaps = 20/452 (4%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ITE++ + ++ D LT +PNR F+DRL + + V+++D+D +K+ Sbjct: 199 ITERQ--SKELVHQYSHDLLTNLPNRILFVDRLEQSIGR-RASRDAHLAVILLDLDNFKR 255 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPD------------ILARLSGNRFGIILISENN 626 +ND LG GD ++ L + ++ + L+RL G+ FGIIL ++ Sbjct: 256 VNDSLGHKSGDLLIKQLGEDLRKVFLGNELARRYGIEASSITLSRLGGDEFGIILDEVDS 315 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 + + + I+ ++ ++ +T S+G + + + ++KNA+ AMY AK Sbjct: 316 LDLVVRIVQHLIEVISREHDIEGHQVFLTCSVGISVFPYDGDDADTLIKNADAAMYDAKQ 375 Query: 687 RGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 RG N + + + + L A+ E + Y P + ++ ++VG EAL++W Sbjct: 376 RGRNSFQFYTKDINSQTYRQLILENQLVKALAREEFEVHYQPQVDVISGQVVGAEALVRW 435 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G + F+ IAEE +I+ + ++L+++ +DI P I IN++++ Sbjct: 436 RHPEKGLQPPANFIAIAEETGIIEGLGAWVLQKVCQDIRQLTRDGYRIP-RISINLSARQ 494 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 ++L E + I +P+ I+L +ES +M + + + +L +L +G+ L +DDFG Sbjct: 495 FRQSDLVEQCRNTIRSAGIAPAYIELELTESTIMKDIDIAVGMLRQLNALGVRLAIDDFG 554 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 T S L+ L + P DT+K + S + AI+ +I+ +AK++E ++A+ + Sbjct: 555 TGYSSLNNLKHFPIDTLKIDKSFVRDIPGDRDDEAIVTAIVALAKSLELEVVAEGVETRE 614 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + L R+GC+ +Q + PL F + LK Sbjct: 615 QLGFLKRLGCEIVQGYFFSRPLPFEGFREYLK 646 >gi|330986384|gb|EGH84487.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 732 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 128/580 (22%), Positives = 230/580 (39%), Gaps = 17/580 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ ++ + + R S D + D ++ I Sbjct: 147 VLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495 G S G + I R L + D + Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVASGGPTSIIGKSINLTAIHRDGHTIPI 264 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + G+ I D+T++ ++ + + A D+LTG+ NR + R+ Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D L +++ID+D +K +ND LG A GD VL ++R+ E + ++ARL G+ Sbjct: 323 -----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGGD 377 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F + L + +A+ I PI + I + ASIG + + S +ML Sbjct: 378 EFVVFLSDTTDPDNATSLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQMLG 437 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE- 556 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 +G+ + DDFGT + LS L P +K + S ++G ++K I+ ++I +A Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFNL 676 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + A+ I + CD Q P+ + + Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716 >gi|300868139|ref|ZP_07112773.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300333874|emb|CBN57953.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 626 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 122/437 (27%), Positives = 229/437 (52%), Gaps = 4/437 (0%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E + + +AF D+LTG+PNR F+++L +++L+ D + V+ ID+D++K +N Sbjct: 173 ELLAKEDKLRYDAFHDSLTGLPNRTWFINQLNRVIELANLDSDYLYAVLFIDLDRFKVVN 232 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG VGD++L +R+ + + DI+ARL G+ F I+L + + + A + + Sbjct: 233 DSLGHLVGDELLKIAAKRLQDCVPETDIVARLGGDEFIILLEAIGDMNEAISTADRILEQ 292 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE--SFRVS 698 + +P + EI ASIG T + + +++A++AMY AK +G E + + Sbjct: 293 LRLPFIFDKYEIFTGASIGITFSTMGYDRAVDAIRDADVAMYQAKIKGKGCYEVLTKAIQ 352 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + ++R+ ++ +L A+E E L Y PI+ L ++G EAL++W +S ++F+ Sbjct: 353 TQAANRLQLENELRKAIELEEFCLYYQPIVSLSTGHLLGFEALVRWQRAFGELVSPAKFI 412 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817 +AEE+ I ++ ++ + R + W+ Q + + +N++ L L E MQ + Sbjct: 413 PLAEEIGAINSLGWWIFQEACRQLRLWQQQFPQALGLTLNVNVSPVQLKQANLVERMQKI 472 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + T S S +KL +ES + +L +L+ GI L +DDFGT S LS L P Sbjct: 473 VEATGVSSSCLKLEITESCFLEASTCEATMLKQLKSQGIKLCIDDFGTGYSSLSRLHEFP 532 Query: 878 FDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 DT+K + S + + + I+ +I+ +A + ++A+ I +++L +GC+ Q Sbjct: 533 IDTLKIDRSFVNRISAGKSDGIVETIVTLAHSFGMDVVAEGIETLEQLEKLCSLGCELGQ 592 Query: 937 DSHVASPLGFNSILKLL 953 + P+ + +LL Sbjct: 593 GYLFSKPVDSQTATQLL 609 >gi|121603197|ref|YP_980526.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Polaromonas naphthalenivorans CJ2] gi|120592166|gb|ABM35605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Polaromonas naphthalenivorans CJ2] Length = 836 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 133/544 (24%), Positives = 249/544 (45%), Gaps = 14/544 (2%) Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486 V G + + G + + + +R + E + Sbjct: 294 IVFVNQAFEEHTGYSGHEVLGQTP--RKLFGPGAVQDELQGMTKMLLRKR-HARSELLIY 350 Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546 + W+ + I ++ + ++ ++ + DIT++K + + I AF D LT +PNR Sbjct: 351 RKNGSCFWLELEIVQVAVTADELTHWVAVGRDITQRKVNADAIHQLAFYDPLTTLPNRLM 410 Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 L+RL ++ SA + +M ID+DK K +ND LG GD +L + R+ ++ Sbjct: 411 LLNRLEQVMAQSA-HPRRQGALMFIDVDKLKVLNDTLGHHKGDLLLQQVAERLAGCVEDT 469 Query: 607 DILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 D++ARL G+ F ++L + + + A + + + P +L + T+SIG Sbjct: 470 DMVARLGGDEFVVLLENLGDDAGSAAAHARQLAEKVLEQLREPFDLGGHQHYTTSSIGVT 529 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSE 719 S ++ + SE+LK A+LAMY AK G N + F + +L +A+ E Sbjct: 530 SLNAAHGSVSEVLKQADLAMYQAKTTGRNALCFFDPEMQAAVNANAAVSSELHIALRKQE 589 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L Y P + + G+EAL++W HPK G + ++F+ +AEE +I + + L Sbjct: 590 FVLHYQPQVD-SQGRVNGVEALLRWHHPKRGLVMPTDFIPMAEETGLILPLGRWALATAC 648 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + +W + I +N++ + + + + A I +T P +KL +E+++ Sbjct: 649 EQLAAWAAWPQAADLSIAVNVSVRQFRHPDFVDQVMAEIRRTGIKPQHLKLELTETLLAD 708 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIA 897 + + +G L+ +G++L LDDFG S LS L +P D +K + S + + A Sbjct: 709 GMDVTLARMGTLKALGVTLALDDFGMGYSSLSLLKRLPLDQLKIDKSFVAEVLTDPADAA 768 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 I R+II +A ++ ++A+ + + L GCD Q ++PL ++ L + Sbjct: 769 ISRTIITLAHSLNLKVVAEGVETQAQQDFLVAEGCDQFQGFLFSAPLPIEALEAYLMAQS 828 Query: 958 PLVK 961 P +K Sbjct: 829 PPLK 832 Score = 68.8 bits (167), Expect = 5e-09, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 6/151 (3%) Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGP 448 L G + G R ++ + W D+ +T + + A ILGL + + Sbjct: 11 ALTGGQVPTALQQAGHRLAMTERIAHIGSWALDLPALQLLTYSSEFAAILGLPADAPL-T 69 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 R +L + E ++ W+ + + N G Sbjct: 70 WDELADRFAPEYRKRIAALLQQCASHGTA-FDEEMQIDTPL-CRKWVRMACEAVQNKRGQ 127 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 I G+ DI+ QK + + L A + LT Sbjct: 128 IKSLQGVLQDISTQKHAQQETLHLAMR--LT 156 >gi|121587851|ref|ZP_01677608.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 2740-80] gi|147673182|ref|YP_001216147.1| PAS/GGDEF domain-containing protein [Vibrio cholerae O395] gi|153215852|ref|ZP_01950184.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 1587] gi|153802006|ref|ZP_01956592.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-3] gi|153818697|ref|ZP_01971364.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae NCTC 8457] gi|153822535|ref|ZP_01975202.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae B33] gi|153826524|ref|ZP_01979191.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-2] gi|153829181|ref|ZP_01981848.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 623-39] gi|227080834|ref|YP_002809385.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae M66-2] gi|229505725|ref|ZP_04395235.1| hypothetical protein VCF_000936 [Vibrio cholerae BX 330286] gi|229509242|ref|ZP_04398727.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33] gi|229519550|ref|ZP_04408993.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9] gi|229530459|ref|ZP_04419847.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae 12129(1)] gi|229608836|ref|YP_002879484.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae MJ-1236] gi|254226539|ref|ZP_04920122.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V51] gi|254291892|ref|ZP_04962674.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae AM-19226] gi|254850887|ref|ZP_05240237.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255744130|ref|ZP_05418083.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS 101] gi|262156106|ref|ZP_06029225.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE 91/1] gi|262169951|ref|ZP_06037641.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27] gi|262191207|ref|ZP_06049406.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae CT 5369-93] gi|297580779|ref|ZP_06942705.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae RC385] gi|121547887|gb|EAX57971.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 2740-80] gi|124114569|gb|EAY33389.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 1587] gi|124122465|gb|EAY41208.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-3] gi|125620943|gb|EAZ49294.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V51] gi|126510777|gb|EAZ73371.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae NCTC 8457] gi|126519953|gb|EAZ77176.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae B33] gi|146315065|gb|ABQ19604.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae O395] gi|148875370|gb|EDL73505.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 623-39] gi|149739704|gb|EDM53911.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-2] gi|150422178|gb|EDN14143.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae AM-19226] gi|227008722|gb|ACP04934.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae M66-2] gi|227012478|gb|ACP08688.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O395] gi|229332232|gb|EEN97720.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae 12129(1)] gi|229344239|gb|EEO09214.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9] gi|229353814|gb|EEO18750.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33] gi|229357948|gb|EEO22865.1| hypothetical protein VCF_000936 [Vibrio cholerae BX 330286] gi|229371491|gb|ACQ61914.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae MJ-1236] gi|254846592|gb|EET25006.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae MO10] gi|255738070|gb|EET93462.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS 101] gi|262021685|gb|EEY40396.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27] gi|262030142|gb|EEY48787.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE 91/1] gi|262032909|gb|EEY51448.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae CT 5369-93] gi|297535195|gb|EFH74030.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae RC385] Length = 684 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 132/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182 Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +I + F + L S + + R +E +++ + + Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234 Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + D E K+ +A D+LTG+ NR F RL + + Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL ++ Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + I P +L + SIG + + +L+NA+ AMY AK R Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++W Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+G +L++DDFGT Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|323528074|ref|YP_004230226.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001] gi|323385076|gb|ADX57166.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1001] Length = 667 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 132/542 (24%), Positives = 252/542 (46%), Gaps = 11/542 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + G+ ++ G W ++ D + F R + Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIIGRN-VWALFMSSEDGAASSQNIAGFF-NRGVSYEV 186 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E RV+ + + ++ S S D I DITE++ + E + A D+LTG+ Sbjct: 187 ERRVKTLNGERLFLFRNKFVQSGSGIDEQYLICSGTDITEERLAQERLTQLANTDSLTGL 246 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 NR + D++ T ++ +A V+ +D+D +KK+ND G GD ++ ++ IG Sbjct: 247 ANRNAIQDKIRTAIEEAA--PGESVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSAAIGT 304 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D LARL G+ F I+L ++ + ++ A + + + P +L E+ SIG A Sbjct: 305 CLNEGDTLARLGGDEF-IVLAAKGTAHELEATAQRILERMRTPFSLGLVEVYTGCSIGIA 363 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 + ++++A+ AMY AK G F R + + + +L +E + Sbjct: 364 RYPEHGDNLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGLEEGQ 423 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L L Y P + L + G+EAL++W+ P+ G I +EF+ AEE +I + ++++ Sbjct: 424 LTLHYQPKLVLSTGVVQGVEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMQT-- 481 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + + +A+ + + IN++++ L+D + +++ P + + +ES ++ Sbjct: 482 AAKQAAKWKADGHNLRVAINVSARQLVDTAVVRHFTEALAEAHLDPCLVDVELTESCLIE 541 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897 + + L+ R++G + LDDFGT S LS LG IP D +K + S + A Sbjct: 542 DEAAAIDLIKSFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADTKAQA 601 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++RS++ +A+ + ++A+ I E + + +G +Y+Q A P+ + LK+R Sbjct: 602 LVRSMVVVAQELGFKVVAEGIETESEEAFMKGLGVEYVQGYLYAQPMPAAEFERWLKDRQ 661 Query: 958 PL 959 L Sbjct: 662 KL 663 >gi|15640673|ref|NP_230302.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|9655090|gb|AAF93819.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 684 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 133/572 (23%), Positives = 256/572 (44%), Gaps = 32/572 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182 Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +I + F + L S + + R +E +++ + + Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234 Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + D E K+ +A D+LTG+ NR F RL + + Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL ++ Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + I P +L + SIG + + +L+NA+ AMY AK R Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++W Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + ++ L+ T P+ I +ESVVM + E ++ +L ++K+G +L++DDFGT Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESVVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|229165486|ref|ZP_04293268.1| Sensory box/GGDEF [Bacillus cereus AH621] gi|228617991|gb|EEK75034.1| Sensory box/GGDEF [Bacillus cereus AH621] Length = 689 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 121/549 (22%), Positives = 238/549 (43%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G + +I+ F+ Sbjct: 149 FKSLLEYNNDSIISVDSIGRITYANPATYEIFGYRYEELKDQFI--FQFINKEYEKTFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + R ++ + + + ++ +R P+ N +I+ + D+T Q + Sbjct: 207 IFKNALQGRAKQIVAK-KYIHKEGYELYISVRTIPII-VNSEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L + ++ ID+D++ IND G Sbjct: 265 MKTEYLAYFDQLTGLMNRISCTNKLNEFLAENKE-----FALVFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + +L L R ++F +++ + + + A + K I+ Sbjct: 320 EGDQVLKKVTECLRDLKIEDMHLFREHDDQFVMLIENIT-REYVEEVAQTILKKISGHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G + + R R Sbjct: 379 IEEEDVYLSASIGIVMAPEDGMDEKILFQRVDAALEKAKEKGKGYYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E L Y P I + +I +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFSLYYQPQINIETGKIASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ I W ++ + I +NI++K L E + ++K Sbjct: 499 GFIIKLDEWVVHQVCEQIREWLNK-GYVVVPIAVNISAKHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 PHLLAIEVTEGALI-HKDVSKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A + +IA+ + I+ L Q Sbjct: 617 RSFMEGIYKDERDTNITAAIINLAHTLGLNVIAEGVEKAEQIQFLKGKNVKIAQGYFYNR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSIYDVEN 685 >gi|295703224|ref|YP_003596299.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319] gi|294800883|gb|ADF37949.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319] Length = 843 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 117/451 (25%), Positives = 217/451 (48%), Gaps = 10/451 (2%) Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + ++ D + KKS E +A+ D LTG+PNR+ F + L L S Sbjct: 392 NHLSHFLKTYVD--DLKKSQEESEYHAYHDFLTGLPNRRYFKEELNRRLIESKEKSIRHV 449 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISEN 625 V+ +DID++K IND LG + GD ++ ++ RI E L L R G+ F I+ Sbjct: 450 AVLFMDIDRFKDINDTLGHSKGDQLIQLISNRIKECLPPANSFLTRQGGDEFVILFSDFT 509 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ + + P + E+ V+ S G + + ++ A++AMY +K Sbjct: 510 -PEEVKCITEKIIAYVQQPCYIDNDEVFVSISSGLSFYPEHSTNLDTLITYADVAMYASK 568 Query: 686 HRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +GG+ V + + ++++V I+ L A++ ++ + Y P I I G+EAL++ Sbjct: 569 RQGGSKVSIYHDSLNQKQAEKVHIETRLRKAIQKGDIDVYYQPKIEAHRNVITGVEALVR 628 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+ + G +S F+ IAEE +I+ + ++ + + W + + + +N + + Sbjct: 629 WNDAELGFVSPEVFIPIAEEAGLIQPLWEVVMRKACSQVSKWNKE-RNEKMTLAVNFSPR 687 Query: 804 DLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 D L +Q +S + P+ ++ +ES ++ N E + L L+K GIS+++DD Sbjct: 688 QFQDPIVLVNEIQQFLSLHRFDPTWFEMEITESTLLMNAEETIKALHLLKKYGISISIDD 747 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +P D +K + S + E I ++II ++++++ +IA+ + Sbjct: 748 FGTGYSSLSYLKKLPIDCLKIDRSFIQDIQEDYSNSEIAQAIISLSQSLKLQVIAEGVEE 807 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 E L GCD++Q + PL Sbjct: 808 EYQKAFLMENGCDHMQGYLFSKPLAAKDFEA 838 >gi|219847558|ref|YP_002461991.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Chloroflexus aggregans DSM 9485] gi|219541817|gb|ACL23555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Chloroflexus aggregans DSM 9485] Length = 830 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 149/714 (20%), Positives = 289/714 (40%), Gaps = 32/714 (4%) Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323 S I L Y + + + + + + + + Sbjct: 127 SAIAILDRYGRVLAANVRWLQLGPLLGVDTFDCAVGAAFLAACQLGRGSAVVIATAIEQL 186 Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383 + AV W+ + G + + + + + +V Sbjct: 187 LASAQERYENEVAAVDSTRRWLSVRAVRFGAGSRVRVVIVLEDVSARHQADQIALVRRRV 246 Query: 384 FTVIQHVLATGYFSQGIFS-------DGERQSLAVLGSGDIV-----WDWDIVRDRVTTT 431 +I ++ + D + A+ +G V D + Sbjct: 247 LELIARQYDLRTIARELLQLIGEQMPDLVYAAYAIRSAGVFVSYHHEILHDDQPNLDRWA 306 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA--AD 489 I T+ + + + ++ + R R AD Sbjct: 307 EQILTMSPYPRQRIAELPLDSPVG------QRMQELIQLHIVNRA--WIAVVRTNRDQAD 358 Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFL 548 P++ + I I EQ +L + A D LTG+PNR F Sbjct: 359 GWLLLCRRNDTPLTTDEKQAIDQIEQLTIIALEQHTTLHKLAYQAHHDALTGLPNRLLFE 418 Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608 DRL +DL+ +++L V+ ID+D++K +ND LG A+GD +L+ + RR L+ D Sbjct: 419 DRLQQAIDLARRNNSL-VAVLFIDLDRFKHVNDTLGHAIGDLLLIQVARRFELCLRATDT 477 Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668 LAR G+ F ++L + +A A + +++ P + EI V+ASIG + + Sbjct: 478 LARHGGDEFLLVLPEITSPQHVATVARRLHEALDRPFFINGHEIFVSASIGASLYPIDGS 537 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHP 726 + + A++AMY AKH N + F +++ +++ I+ L A+E +EL L Y P Sbjct: 538 DVVSLQRAADIAMYRAKHTLRNSFQFFDAAITNASLEQLQIETLLRRAIERNELLLYYQP 597 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + + EAL++W+ + G +S F+ +AEE +I I +++L +AR + W+ Sbjct: 598 KVD-RSGNLTSFEALLRWNSAELGMVSPVRFIPVAEETGLIIPIGIWVLTELARQVREWQ 656 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 Q P + + N+++ + + + ++++ ++L +E+++MG E R Sbjct: 657 RQGL-PLVPVAANVSALQFAHVDFVQQVADILAQAALPAGWLELELTETMLMGQIEDLRR 715 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSI 902 L LR++G++L +DDFGT S LSYL +P +K + S + + +I +I Sbjct: 716 QLTELRQLGVTLAIDDFGTGYSSLSYLHLLPISILKIDRSFIMRLDQSDATVERSITNAI 775 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 I + ++ ++A+ + E + L GCD Q ++ PL + + L+ + Sbjct: 776 IALGHHLGMQVVAEGVETEGQFQILLSAGCDLFQGYYIERPLPPDETVAWLRRK 829 >gi|91223235|ref|ZP_01258501.1| ScrC (sensory box/GGDEF family protein) (involved in swarmer cell regulation) [Vibrio alginolyticus 12G01] gi|91192048|gb|EAS78311.1| ScrC (sensory box/GGDEF family protein) (involved in swarmer cell regulation) [Vibrio alginolyticus 12G01] Length = 776 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 121/442 (27%), Positives = 219/442 (49%), Gaps = 9/442 (2%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I +K S + + A D LT +PNR +RL L ++ + + VM ID+D +K+ Sbjct: 335 IERRKASEKELAFQAKYDTLTNLPNRSYGSERLALELIRASRSGS-KVLVMFIDLDHFKQ 393 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G VGD++L +R+ ++ + D+LAR+ G+ F +++ ++ A ++ Sbjct: 394 INDSMGHFVGDEILKLSAQRLYQVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 453 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P E +++S+G + + + ++L A++AMY AK G + + + Sbjct: 454 SAFNDPFVWNNHEFFLSSSVGMSVFPDDGDNAEQLLACADMAMYRAKQDGRDGFCFYNHN 513 Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+ N L L Y PII L +IVG EAL++W+ K+G ++ E Sbjct: 514 MNQDLQRYLDLENRLRSAISNQLLELYYQPIIELSSGKIVGAEALMRWNDDKYGFVNPEE 573 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815 F+ IAE+ +I I F +++ R W+ P+F+ +N +S L ++ Sbjct: 574 FISIAEKNGLIHQIGEFAIQQACRQAAQWQSL---TPLFVSVNFSSVQFRYCERLLTFIK 630 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ + + +ES++ + +L LR +G LT+DDFGT S LSYL Sbjct: 631 HSLEESGLPSDKFDIEVTESLLFNHDSELLDMLNNLRALGTKLTIDDFGTGYSALSYLQK 690 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S M + ++ II MAK ++ I+A+ I + + L + C+ Sbjct: 691 FPFDRLKIDRSFMQNMFENDSDRELVNVIIAMAKALDLKIVAEGIEEQRHVDYLKNLNCE 750 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 + Q H + PL LL + Sbjct: 751 FGQGFHYSRPLPAKDFEALLAK 772 >gi|317130662|ref|YP_004096944.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Bacillus cellulosilyticus DSM 2522] gi|315475610|gb|ADU32213.1| diguanylate cyclase/phosphodiesterase with extracellular sensor [Bacillus cellulosilyticus DSM 2522] Length = 774 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 119/430 (27%), Positives = 214/430 (49%), Gaps = 8/430 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 +S + + A D LTG+PNR L + +D +M +D+D++K +ND + Sbjct: 348 QSRKEVEYRANHDILTGLPNRYHIEQLLEQEIVTCDENDQ-SLALMFMDLDRFKILNDTM 406 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G +GD +L+ R+ + + + RL G+ F +IL + + K+++ A + K +A Sbjct: 407 GHQIGDQLLIQTAIRLQQHVCENCTVGRLGGDEF-LILSKDASIEKVSNIAKKILKDMAN 465 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P + +E + SIG + + T +++K+A+ AMY AK GGN+ + + Sbjct: 466 PFIINSKEFFTSPSIGISVYPKDGQTKDDIIKHADTAMYVAKENGGNNYQFYTPEPTNLL 525 Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I+ DL A++N E L Y P + L ++VGLEALI+W HPK G I +F+ IA Sbjct: 526 SKKYIIENDLRKALKNEEFLLYYQPQVDLKSGDLVGLEALIRWQHPKLGLIPPMDFIPIA 585 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE I I ++++ R W+ Q I + +N++ D E ++A + +T Sbjct: 586 EETGYINHIGKWLIKEACRQNKQWQ-QNGSFYIPVAVNVSPWQFRDKNFVENIKAALDET 644 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P ++L +ES +M + + + +++++GI + +DDFGT S L+ + +P DT+ Sbjct: 645 NLDPKYLELEITES-MMHHFIDTIDKVHQVKEMGIKVAIDDFGTGYSSLNAIDQLPIDTL 703 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + + + AI+++II + N+ IA+ + E L C Q Sbjct: 704 KIDRSFIRDMITNDSKAAIVKTIIDLGNNLHLNTIAEGVEYEEQATFLANQDCVKAQGYL 763 Query: 940 VASPLGFNSI 949 + PL + Sbjct: 764 FSKPLPPEQL 773 >gi|325113002|ref|YP_004276948.1| putative signaling protein [Acidiphilium multivorum AIU301] gi|325052469|dbj|BAJ82806.1| putative signaling protein [Acidiphilium multivorum AIU301] Length = 620 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 123/503 (24%), Positives = 238/503 (47%), Gaps = 22/503 (4%) Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 +L + R + + G L+ AAD + W + + + G + Sbjct: 112 FLDRVGP----GCRAAMAALFQGDGGTLE----WLAADGE-AWFRTEVAALRDEGG-LSG 161 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ I D++E++++ E I A D LTG+ NR+ ++L L+ + + V VI Sbjct: 162 YLVITQDVSERRRATERIRYLAEHDPLTGLANRRRLHEQLEGELE-AGRRQGTKFAVHVI 220 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND+ G A GD +LV L + + + D++AR+ G+ F ++ ++ Sbjct: 221 DVDRFKTVNDLFGHAAGDRLLVDLATCLRQEARESDMIARIGGDEFVVLQTGIGDARDAG 280 Query: 632 DFAIAMRKSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + +++ + R + T SIG A T+ +L +A++A+Y K G N Sbjct: 281 ALAGRLVGAVSARLAETGARALAATVSIGIALAPDDGTTAEALLSHADMALYQVKSTGRN 340 Query: 691 HVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F + R ++ +L A E E+ + Y P+ + + +VG EAL++W Sbjct: 341 GFAFFNTEINEAQLARRRMEAELRGACERGEMAVHYQPLFEIASDRVVGFEALVRWRW-N 399 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 IS + F+ IAEE I I F+L R+ W + + +NI++ + D Sbjct: 400 GEEISPATFIPIAEESGSIIEIGRFVLREACREAAGWPA-----KLRVAVNISALQIQDG 454 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 L + + ++ +T R++L +ES+++ N E + +L R+R +G++++LDDFGT S Sbjct: 455 GLPDLVATVLEETGLEAGRLELEVTESLLLANAEAATEVLARIRALGVTISLDDFGTGYS 514 Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+ L PFD +K + S + + AI+ +++ + + ++ +++A+ + + Sbjct: 515 SLATLRMFPFDKIKLDRSFVNDLGRLGEAEAIVMAVLGLGRALDVSVVAEGVETKEQAAM 574 Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949 L GC +Q + P Sbjct: 575 LREAGCSLLQGYLIGRPAPIARF 597 >gi|82702833|ref|YP_412399.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC 25196] gi|82410898|gb|ABB75007.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196] Length = 1109 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 140/577 (24%), Positives = 260/577 (45%), Gaps = 11/577 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442 +I+ + I + + + D++++ D + ++ Sbjct: 528 VAMIRDITEQERRKTEILAARRQLQATLDAIPDLLFELDADGCVHAWHSVRRTEFPTVSG 587 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRP 501 S+ G ++ D + L Q E R+ ++++ W + + Sbjct: 588 ESLVGKKVA--DFLPTGAVDIILSALAEAQEKGLSSGKQLELRLPGREDKW-WFELSVSR 644 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + LR+I +A DITE+K S + IL A D+LTG+PNR DR+ ++ +A Sbjct: 645 KHVDSAAGLRFIVLARDITERKASEQRILHLAHYDSLTGLPNRALLADRMRVAINRAARQ 704 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 R V+ +D+D++K IND LG VGD +L + R+ ++ D ++R+ G+ F ++L Sbjct: 705 AK-RLAVLFVDLDRFKAINDSLGHDVGDHLLKVVAERMQTSIRSVDTVSRVGGDEFVVLL 763 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + A A + ++ P + + E+ +T SIG + + + +L+NA+ +M Sbjct: 764 NEIETAEDAARVAQKIIDGLSQPYQIEKHELLLTGSIGICIYPDNGKEPNILLRNADASM 823 Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 Y AK G N + + +R+ ++ DL AVE E++LVY P I L ++G+E Sbjct: 824 YTAKEAGHNRYQFYSEDMTARAIERLSLEHDLRGAVERGEMFLVYQPQIELGTSRVIGVE 883 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 L++W HP G IS F+ +AE+ +I +I + L R W ++ I +N Sbjct: 884 VLMRWRHPARGLISPVRFIPVAEDTGLILSIGEWGLRESCRQAQLWYERGL-LNACISVN 942 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 +++ + ++ + ++ +P+ ++L +ES VM E + L L +G+ + Sbjct: 943 VSAVQFRQTDFVGIIENALQESGLAPTNLELELTESAVMQGAEPALNKLRELDALGVKVA 1002 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S L+YL D +K + S + AI +I+ M N+ IIA+ Sbjct: 1003 IDDFGTGYSSLAYLRQFTVDRLKIDQSFVRDVPGNNDAEAIAAAIVAMGLNLGFRIIAEG 1062 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E + L + C Q A P+ + Sbjct: 1063 VETEAQAEFLQSVLCKEGQGYLFAWPMTAIEFEAWIA 1099 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 18/198 (9%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 L +W + WM+ + V +V+L+ + Q D Sbjct: 372 LAQLWTLVFWMSAVILIA---------VTAVSVVLLLLWRQQQRAHQLALIIHTADQDR- 421 Query: 406 RQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 + R + ++G ++ + ++W+ H +D Sbjct: 422 LLKYFYDLPFIGMAITSPDTKRWLRFNNQFCEMMGYSTEELA--KKSWIEITHPDDVAKS 479 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + R D + + ++ + +G + ++ + DITEQ++ Sbjct: 480 TAERERILKGESEGYAMNKRFIRKDGSIIFANVDVKCVRRDDGTVHYFVAMIRDITEQER 539 Query: 525 -----SLEGILCNAFQDN 537 A D Sbjct: 540 RKTEILAARRQLQATLDA 557 >gi|148243771|ref|YP_001220011.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5] gi|146400334|gb|ABQ28869.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5] Length = 620 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 124/503 (24%), Positives = 240/503 (47%), Gaps = 22/503 (4%) Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 +L + R + + G L+ AAD + W + + + G + Sbjct: 112 FLDRVGP----GCRAAMAALFQGDGGTLE----WLAADGE-AWFRTEVAALRDE-GRLAG 161 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 Y+ I DI+E++++ E I A D LTG+ NR+ ++L L+ + + V VI Sbjct: 162 YLVITQDISERRRATERIRYLAEHDPLTGLANRRRLHEQLEGELE-AGRRQGTKFAVHVI 220 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D++K +ND+ G A GD +LV L + + + D++AR+ G+ F ++ + ++ Sbjct: 221 DVDRFKTVNDLFGHAAGDRLLVDLATCLRQEARESDMIARIGGDEFVVLQVGIGDARDAG 280 Query: 632 DFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + +++ + R + T SIG A T+ +L +A++A+Y K G N Sbjct: 281 ALAGRLVGAVSARLAEPGARALAATVSIGIALAPDDGTTAEALLSHADMALYQVKSTGRN 340 Query: 691 HVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F + R ++ +L A E E+ + Y P+ + + +VG EAL++W Sbjct: 341 GFAFFNTEINEAQLARRRMEAELRGACERGEMAVHYQPLFEIASDRVVGFEALVRWRR-D 399 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 ++S + F+ IAEE I I F+L R+ W + + +NI++ + D Sbjct: 400 GEDVSPAVFIPIAEESGSIIEIGRFVLREACREAAGWP-----VKLRVAVNISALQIQDG 454 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 L + + ++ +T R++L +ES+++ N E + +L R+R +G++++LDDFGT S Sbjct: 455 GLPDLVATVLEETGLEAGRLELEVTESLLLANAEAATEVLARIRALGVTISLDDFGTGYS 514 Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L+ L PFD +K + S + + AI+ +++ + + ++ +++A+ + E Sbjct: 515 SLATLRMFPFDKIKLDRSFVNDLGRLGEAEAIVMAVLGLGRALDVSVVAEGVETEEQAAM 574 Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949 L GC +Q + P Sbjct: 575 LRAAGCSLLQGYLIGRPAPIARF 597 >gi|121728390|ref|ZP_01681418.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V52] gi|121629324|gb|EAX61756.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V52] Length = 684 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 132/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182 Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +I + F + L S + + R +E +++ + + Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234 Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + D E K+ +A D+LTG+ NR F RL + + Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL ++ Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + I P +L + SIG + + +L+NA+ AMY AK R Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++W Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+G +L++DDFGT Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTLIENIINLGRSLNLTVVAEGVETQQQ 644 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|119493530|ref|ZP_01624196.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119452647|gb|EAW33828.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 596 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 130/439 (29%), Positives = 226/439 (51%), Gaps = 4/439 (0%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + ++ + AF D LTG+PNR F++ L L + D + + ++ ID D++K +N Sbjct: 154 QLEEVHAKLTTLAFHDELTGLPNRALFINSLNEALKNNQADSSDQFALLYIDCDRFKVVN 213 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +VGD +L ++ R+ L ILARL G+ F I+L + + A + ++ Sbjct: 214 DSLGHSVGDRLLTAVAHRLSNALPSVQILARLGGDEFAILLTNIQEIKPAVEVAEKVIET 273 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699 + P L + ++ V ASIG A S +L++A+ AMY AK +G V + Sbjct: 274 LLTPFKLEKYDVYVNASIGIALSNESYTQPQHILRDADAAMYRAKKQGNRYQVFDPTMHQ 333 Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 I+ DL A+ +EL L Y PII L ++VG E L++W H G IS EF+ Sbjct: 334 KAVQTFQIETDLRKAISLNELRLNYQPIIDLKTGKLVGFETLVRWFHTNRGLISPIEFIP 393 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I I ++LE+ + + +W++ + + IN++++ +L + + ++ Sbjct: 394 VAEETGLIIPIGYWILEQACQQLKTWQENGLANEELTVNINLSARQFSQIDLIDQIDQVL 453 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +K IK +ES +M N ++++ +L ++R I + LDDFGT S LSYL Y Sbjct: 454 TKIDLDSRYIKFEITESAIMENHQKAQNILEQIRDRQIQICLDDFGTGYSSLSYLDYFSI 513 Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 DT+K + S ++ ++ II +A ++ ++A+ + E + +L + CD+ Q Sbjct: 514 DTLKIDKSFTGRLDGTPAKLGLVPVIINIAHHMGMNVVAEGVETEKQLNQLQELDCDFGQ 573 Query: 937 DSHVASPLGFNSILKLLKE 955 A PL + KLL+ Sbjct: 574 GYFFAKPLDVENATKLLES 592 >gi|89093904|ref|ZP_01166849.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp. MED92] gi|89081790|gb|EAR61017.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp. MED92] Length = 812 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 249/577 (43%), Gaps = 15/577 (2%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 TV Q ++ + + ++ + + A Sbjct: 233 TVQQLLIENRENHHALERSENSLKQLINRVPQLILAVNSEGIVLFCNRKFAEFYSCRIDE 292 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 + G L + + I S + +F + + I P Sbjct: 293 VAGLSLLQLHNVDHE-VEELNQIRRSVEVNQTEEAVTDFIWSSQTGKKLHFSITAAPFVY 351 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + ++ DI+EQK + I A D LTG+PNR DRL L S +L Sbjct: 352 FSEPATLFVAT--DISEQKMVQDHISYMANHDTLTGLPNRALLNDRLEQALAASRRSGDL 409 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 +M ID+D +K IND LG VGD +L + + ++ D +ARL G+ F I+L + Sbjct: 410 N-ALMFIDLDHFKNINDSLGHGVGDLLLKKVAEILINEVRSCDTVARLGGDEFVILLQAF 468 Query: 625 NNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 + + + ++ PI + + ++ + ASIG + + T ++++ A+ Sbjct: 469 QSDVDQVTQDVERVCHKLLTILSQPIEVKQHQLRIGASIGVVLFPMADKTLDDLMRFADT 528 Query: 680 AMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 AMYHAK G N + + + ++ +L A+E + + Y P++ + EI+G Sbjct: 529 AMYHAKENGRNGFAFYHQAMSLAVEKQQNMESELHQAIEEEQFCVHYQPLVSV-GGEIIG 587 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFI 796 EAL++W HP+ G + +EF+ E +I ++ ++L +R I+ W++ P ++ Sbjct: 588 FEALLRWQHPEKGLMPPAEFIPSLEVSGLIVPVSNWLLGHCSRQIVKWKETGFWQPDWYV 647 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +NI+ ++ MQ IS+ + I L +E+V + N E + L +R++G+ Sbjct: 648 SVNISPLQFYQADMVPTMQQAISEGGAHLTDICLEITETVAIENIEFAVNRLKVIRELGM 707 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTII 914 + LDDFGT S LSYL +P D VK + S + + K +I+ ++ +A+ E ++ Sbjct: 708 MIALDDFGTGYSSLSYLKDLPIDIVKIDRSFVQELGQKSKSQSIVEAVTNIARAYELKVV 767 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 A+ I + +GCD Q + P + + Sbjct: 768 AEGIESHDQLMLAHNIGCDIFQGFFIERPQVAEKLKR 804 >gi|224367296|ref|YP_002601459.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223690012|gb|ACN13295.1| signal transduction family protein (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 925 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 142/559 (25%), Positives = 256/559 (45%), Gaps = 19/559 (3%) Query: 418 VWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 ++ + + + G+ S +M L IH D + ++ Sbjct: 369 IFQCQLDTRGRYHFSYVSSGVYQACGITSKAMEQEAGVLLDRIHEQDVERVTERVNQS-T 427 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + +FR+ + W+ P ++G L Y G D+TE+K S + I A Sbjct: 428 QTLETWKSQFRILHPERGLIWLEGHATPERMTDGGTLWY-GYIWDVTERKASEDQIKKLA 486 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LTG+ NR+ +DRL + +S N V+++D+D +K +ND G VGD +LV Sbjct: 487 LYDALTGLANRRLLMDRLGHAIAISRRKKNC-GAVLMLDMDNFKSLNDTKGHNVGDALLV 545 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLL 648 + +R+ ++ D +ARL G+ F ++L K A ++ + L Sbjct: 546 EVAKRLQACVRETDTVARLGGDEFVVLLEWLGQDEKVGHEKAMAIAEKIKGMLNQAYLLG 605 Query: 649 --EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 +ASIG + + S E+LK A++AMY AK RG N V + + Sbjct: 606 REHHLHHSSASIGVSLFQSGDAGEGEVLKRADVAMYEAKDRGRNRVCFYSEARQAMVDTR 665 Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + D+ + E +L P L + +I G EAL++W +S F+ IAE Sbjct: 666 AAMALDMQTGLGKKEFFLFLQPQF-LNNGKICGAEALLRWMPRGKPPVSPELFIPIAEST 724 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + +++E+ + I I +NI+++ +D + M+ ++++ Sbjct: 725 DLILLLGEWVMEKACQYIKDLGRYDLPKEFAIGVNISARQFVDERFLDKMKGILNRAGID 784 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 PSR+K +E+ ++ + ER R++L LR +G+S+ LDDFGT S L+ + +P T+K + Sbjct: 785 PSRLKFELTETCLIQDMERGRMILNELRLMGLSVELDDFGTGYSSLNSIKNLPLTTLKLD 844 Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 SL++G + AI+++ + MAK + IA+ + + L GCD +Q A Sbjct: 845 RSLISGIENQNSNRAIVKAALAMAKAMSLKTIAEGVETPTQMDFLVAQGCDMVQGFLYAR 904 Query: 943 PLGFNSILKLLKERFPLVK 961 P+ + + L++ L+K Sbjct: 905 PMPYEDFMGFLEQESILLK 923 Score = 95.8 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 1/159 (0%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436 I + V + + + + + +R A + W+ D + T + I Sbjct: 207 FIFRPLEGQVQRALFSLESSVKEMTKTRKRLLAAQKLALVGDWELDTRTGKFTCSDQIYE 266 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 I G+ + + L +H DR L S V ++G L E+R++ D + Sbjct: 267 ICGMCRNDVELTWKAVLKQVHPEDRGMVTKSLRSLVE-KQGALSLEYRIKGQDGVERLVY 325 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 + +G + + G DITE+K+ + + Sbjct: 326 QHAASVKGRDGRVEKVSGAVQDITERKELSAKLEKLSGH 364 >gi|158334589|ref|YP_001515761.1| PAS sensor diguanylate cyclase/phophodiesterase [Acaryochloris marina MBIC11017] gi|158304830|gb|ABW26447.1| PAS sensor diguanylate cyclase/phophodiesterase, putative [Acaryochloris marina MBIC11017] Length = 935 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 121/576 (21%), Positives = 238/576 (41%), Gaps = 17/576 (2%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 I+ + + + + +R D+ W+ D + ++ G Sbjct: 365 IIGAAISARDITVLKDTEEALRESQQRFHDFAAIGADLFWETDAELRFTYLSEQHCSLTG 424 Query: 440 LASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 + G ++ D+ LD+ E + D + Sbjct: 425 SPIEAWIGKSCLDFYAVFKPTAWDHLNQTLDAL-----EPFDIEIECQHLDGNARVLRSI 479 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 +P+ + G Y GI DITE + + A D+LTG+ NR+ F +L I++ Sbjct: 480 GKPVFSPQGVFCGYRGIGRDITEAHSLSQQLTHQATHDSLTGLVNRREFEHQLGQIIEEK 539 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ ++ + +D+D++K +ND +G GD +L + + ++ DIL+RL G+ FG Sbjct: 540 QSNP-IQHALCFLDLDQFKIVNDTVGHLAGDALLKQVADLLQAHIRQTDILSRLGGDEFG 598 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 ++L + + + + + + ASIG T+ + + A+ Sbjct: 599 LLLKNCSLEKARIVTENLISELSQFRFIWEGQLFKIGASIGIVPITADTDNLTLLFAKAD 658 Query: 679 LAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPII--RLMD 732 +A Y AK RG N V + + + +M + A+E S L Y PI+ Sbjct: 659 VACYSAKDRGRNRVHLYHAQAQGVTEQHSELMQVATIRKALEESRFRLYYQPIVPLDTET 718 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 + V E L++ +S + F+ AE ++ I+ +++E + ++ Sbjct: 719 KIPVCYEILLRLQDTDGKILSPNSFLPAAERYGLMLEIDKWVIENVLIKYGAYFQS--QE 776 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I IN++ L D+ L + +Q ++KT P +I +E+V + N +++ + +++ Sbjct: 777 NTRISINLSGSSLDDDALLDFIQTQLNKTQLEPHKICFEITETVAISNFKQAIQCIEKIK 836 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910 + G LDDFG+ S SYL P D +K +GSL+ E ++ +I + + + Sbjct: 837 EFGCHFALDDFGSGFSSFSYLKRFPIDYLKIDGSLVRDMVEDATHQVMVSAINQICRAMH 896 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 IA+ + I L ++G DY+Q + P Sbjct: 897 IKTIAEFVENGDTIVALEQIGVDYLQGYAMGKPQPL 932 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 10/130 (7%) Query: 407 QSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDR 461 ++LA + D + D + +P G + G ++L N Sbjct: 142 RALAAETANDGIVISDATVPGFPVIFASPSFYQFTGYTPDEVIGNSCHFLQGPKTDPNTV 201 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 D R L + + E Q W ++RI+P++N+ G++ +GI DIT+ Sbjct: 202 DEIRQALKN-----DQTFEGEILNYRKMGQPFWNLLRIKPLTNAQGEVHFLVGIQTDITQ 256 Query: 522 QKKSLEGILC 531 QK++ E + Sbjct: 257 QKETEERLRQ 266 >gi|257484752|ref|ZP_05638793.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 732 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 128/580 (22%), Positives = 230/580 (39%), Gaps = 17/580 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ ++ + + R S D + D ++ I Sbjct: 147 VLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495 G S G + I R L + D + Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVASGGPTSIIGKSINLTAIHRDGHTIPI 264 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + G+ I D+T++ ++ + + A D+LTG+ NR + R+ Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D L +++ID+D +K +ND LG A GD VL ++R+ E + ++ARL G+ Sbjct: 323 -----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGGD 377 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F + L + +A+ I PI + I + ASIG + + S +ML Sbjct: 378 EFVVFLSDATDPDNATSLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQMLG 437 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE- 556 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 +G+ + DDFGT + LS L P +K + S ++G ++K I+ ++I +A Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFNL 676 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + A+ I + CD Q P+ + + Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716 >gi|229154257|ref|ZP_04282377.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] gi|228629081|gb|EEK85788.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342] Length = 689 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 118/550 (21%), Positives = 242/550 (44%), Gaps = 16/550 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F+ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKRSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L ++ + + ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNDFL-----NEKIDFAFIFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ A +++K I+ Sbjct: 320 EGDKVLQKVTECLSSFQIPGMHLFREHDDQFVMLIENIT-KERVEVVAKSIQKKISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 + E ++ ++ASIG + + + A+ AK +G H + Sbjct: 379 IEEEDVYLSASIGIVMAPRDGEDEKILFQRVDAALEKAKDKGKGHYHFYCSGLDSEREQR 438 Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 I+ L A+E +E +L Y P I + ++I +EALI+W++ + G + ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFFLHYQPQINIETKKIASMEALIRWENKELGFVPPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ + R I W ++ + I +NI+++ L E + + K Sbjct: 499 GFIIKLDEWVVNEVCRQICEWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 AHLLAIEITEGALI-HKDISKRVLLQLKEQDLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A +E +IA+ + I+ L ++Q + + Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676 Query: 943 PLGFNSILKL 952 PL + + Sbjct: 677 PLSKYDMENM 686 >gi|309792407|ref|ZP_07686874.1| diguanylate cyclase [Oscillochloris trichoides DG6] gi|308225562|gb|EFO79323.1| diguanylate cyclase [Oscillochloris trichoides DG6] Length = 852 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 136/519 (26%), Positives = 238/519 (45%), Gaps = 17/519 (3%) Query: 454 PYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAA--DNQFHWMIIRIRPMSNSNGDI 509 + +D ++D+ R R P+ + + Sbjct: 337 EHCLPDDVCWAGMGDLIDAM--GLRDCWVTPIRAHTGRIGGVLVVAHSEPTPIGLEDAQV 394 Query: 510 LRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + I EQ++ + A D LTG+PNR F + L +D + + + V Sbjct: 395 IELAEQLLMIALEQQEHTRQLAYQAKHDALTGLPNRLLFEENLRRAIDGARHSERM-IAV 453 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 + ID+D++K+IND LG VGD +L+ L RR ++ D LAR G+ F ++L N+ Sbjct: 454 LFIDLDRFKQINDTLGHTVGDTLLIQLARRFESCVRGSDTLARRGGDEFMLVLTDIVNAQ 513 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-R 687 ++ A + + + P ++ E+ ++ASIG + + + + + A+ AMY AKH R Sbjct: 514 QVVKVAHRLMELLQPPFHIAGHELFISASIGASIYPTDGEDPDSLQRRADAAMYRAKHLR 573 Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 + +R+ ++ L A+E +EL L Y P + +IV +EAL++W HP Sbjct: 574 NNFQFFDPTTNQTTLERLRLENYLRRALERNELDLYYQPKVN-RQGQIVAVEALLRWKHP 632 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G I+ S F+ +AEEL +I I + + R I W+ PI + +N++ Sbjct: 633 DLGIIAPSRFVPMAEELGLIIPIGTWCMARAFSQICQWQR--PGRPISVAMNVSIIQFSQ 690 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 E ++ ++ +T PS + +ES+++G+ L LR +G+ L +DDFGT Sbjct: 691 PGFIETVRTVLDETGLDPSLCIIELTESMLIGDQASVTQRLNDLRALGLKLAIDDFGTGY 750 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSIIPMAKNIETTIIAKDIYGEID 923 S L YL +P +K + + ++ R AI+ SII +A ++ ++A+ + ++ Sbjct: 751 SSLGYLRRLPISILKIDRTFVSDIGTDRDDSGRAIINSIINLAHHLGMQVVAEGVETQLQ 810 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVK 961 L +GCD IQ PL + LL R P K Sbjct: 811 RDFLHSVGCDMIQGFFYTEPLPPSLFEYLLDSPRLPSPK 849 >gi|299769310|ref|YP_003731336.1| hypothetical protein AOLE_05330 [Acinetobacter sp. DR1] gi|298699398|gb|ADI89963.1| hypothetical protein AOLE_05330 [Acinetobacter sp. DR1] Length = 950 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 128/575 (22%), Positives = 265/575 (46%), Gaps = 11/575 (1%) Query: 388 QHVLATGYFSQGIFSDG---ERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q L ++ I + E L + + + ++ D + + P + G + Sbjct: 373 QKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEHLNYIDINPYYEKLTGFS 432 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + + F T + + G +F + + + ++ + I Sbjct: 433 KSELLNKELFSIAINQKELQQQFHTSITQQLLE-TGEYMGQFDEKFSSGKSVYLWLHINV 491 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + I YIG A D+TEQK+ + + D+LT +PNR + ++L L + + Sbjct: 492 VKDEFHQITNYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRLYYYNQLHQYLVNPSYN 551 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++ ++ID+++ N+ L GD++L +R+ + ++A L+ + F II Sbjct: 552 IK-NLALIRVNIDRFRAFNEFLNNDSGDELLKQFAQRLRLININAILVAYLNSDDFAIIY 610 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 I + + +++ P + E +TASIG A + + +AE A+ Sbjct: 611 EISPIHPNIEQYCQNILQALNAPFYIDNHEYFITASIGVACFPEHGRQIDHLNNHAEQAL 670 Query: 682 YHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK GGN + + + + ++++L A++N E + Y P I L+D+ I+G EA Sbjct: 671 SEAKRLGGNTISYYCNKAEHPYKTADLEQELRKAIQNDEFVIYYQPKINLLDQSIIGFEA 730 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G + + F+ AE +I I +L+++ + + W++ + + +NI Sbjct: 731 LIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKNA-GYTNVQVSVNI 789 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + L + ++ K S ++L +ES ++ N + + LL +++ IS+ L Sbjct: 790 VAQQIHRGLLLNDLDEVLQKYNIQGSDLELEITESALLDNTDNVKTLLHAIKQRDISIAL 849 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DDFGT S L+YL P D +K + + ++ K+ AI+ ++I M K++ ++A+ + Sbjct: 850 DDFGTGYSSLAYLTEYPIDVLKIDRAFISKIGDHKQEAIVNAMIAMGKSMGLKLVAEGVE 909 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 E + L + CD++Q + P+ I+ L+ Sbjct: 910 TEEQVAYLQKQQCDFLQGYFFSRPIPAEQIIPYLQ 944 Score = 89.6 bits (221), Expect = 3e-15, Method: Composition-based stats. Identities = 54/374 (14%), Positives = 113/374 (30%), Gaps = 42/374 (11%) Query: 181 YKDTVNSFTLYRGIIIGVASLLAI-------FLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233 + ++ F G+ + + L + TI ++ +L ++ V+LG Sbjct: 47 FLSSITIFNWSMGLTVASLTCLLFVPNILTHYRTINFIKKADLILQSICFISGVLLGASV 106 Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293 F + + I A + + FL + Y+ Sbjct: 107 TVIHFYLPQELVTLPDAHILIALFITSAHIIGLTFLTQ-------QPRYFYL---LFIPS 156 Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 + ++ + + +I T Y + Y++ I + I Sbjct: 157 TLPLLIAQFTHTPITQLPFYFAYNIAFIATILCAYATQRNYQK----ISQLLFRNKQLIQ 212 Query: 354 LWMAITKRLDNDIIQPALVGG--------LVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 + T+ + +Q L L+ V + ++ + S Sbjct: 213 ISEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNEQLESHHY 272 Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP----IRNWLPYIHINDR 461 + A +G WDWDI ++ I + + L +H +D+ Sbjct: 273 NLAFANETAGIRPWDWDIENQKL-------EITFFDQQKLTQTTVIHLNTILDRVHPSDK 325 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDI 519 F L + FR+ D + W+ R ++ LR +G+ DI Sbjct: 326 KLFNERLKQHLEGITDHFNINFRILRRDGSWRWIHDVGRVITRDPKTQKALRMVGMTRDI 385 Query: 520 TEQKKSLEGILCNA 533 ++KK E + +A Sbjct: 386 HQEKKDQEHLRLSA 399 >gi|114776871|ref|ZP_01451914.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator [Mariprofundus ferrooxydans PV-1] gi|114552957|gb|EAU55388.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator [Mariprofundus ferrooxydans PV-1] Length = 719 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 132/589 (22%), Positives = 260/589 (44%), Gaps = 21/589 (3%) Query: 388 QHVLATGYFSQGIFSDG-------ERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATIL 438 Q + Q + ER + + + +++ DI + +I + Sbjct: 128 QRLQDFQAMHQRLQESEAQIRKVNERLNFLLTSTAAVIYASDISEHYATTFISDNIERLS 187 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + + L +H +D R L + RG ++E+R + D + W+ Sbjct: 188 GYPANTFTAEADFRLECVHPDDLAMVRNELKLALD--RGSSRFEYRFQHKDGHYFWVGDE 245 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 +R N +G + ++G DI+E K++ E ++ A+ D LTG+PNR + DRL + S Sbjct: 246 VRVEKNRHGQLE-FLGFMADISEHKQNEEKVIQMAYTDLLTGLPNRSLYFDRLKQAIAQS 304 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 + + V+ +D+D +K IND LG GD L+ + +R+ ++ D LAR+ G+ F Sbjct: 305 HRN-HTTMAVLFMDLDYFKPINDELGHEWGDQALIEVGKRLQGCIRETDTLARIGGDEFS 363 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 IIL + A + I P+ L + SIG +S + ++ A+ Sbjct: 364 IILGDIASEQAACRIADKIISCIQEPMLLNHSSYVLGISIGIRIESSDYSDAETFMRLAD 423 Query: 679 LAMYHAKHRGGNHVESFRVSSFR-----SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 AMY AK G N +R S + +++ L A+ N+EL + Y P + L + Sbjct: 424 DAMYQAKEAGRNRCCVYRESGDTQLQGLHSELDMEKALRQALINNELVVYYQPKVDLKEG 483 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G AL++WD G + ++F+ +A + +I +I ++L + + I +W D Sbjct: 484 LITGTHALLRWDRGSEGMLQPAQFLPLANKTGLIVSIGEWVLRQASAQIRAWLDAGLQV- 542 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + +N+ ++ L + + +++ + +P+ ++L SE+ +M + L L Sbjct: 543 VPVSVNVTAEQLRHPDFSRLVASILDECALAPNLLELEVSEADLMRHGSFLTQALHDLSD 602 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIET 911 +G+ +T+ +FG+ L L +P +K + +L+ + +II M + Sbjct: 603 VGVKITMGNFGSGFFSLESLKAMPIHELKMDRALIGKIGHAGDSGQVANAIIAMGHILNH 662 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 ++A+ + + L D + + P+ + I L +R L+ Sbjct: 663 PVVAEGVETHDQLSFLRHHNTDGMLGYLSSPPVTADEITSHLTKRASLL 711 >gi|89896127|ref|YP_519614.1| hypothetical protein DSY3381 [Desulfitobacterium hafniense Y51] gi|89335575|dbj|BAE85170.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 596 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 126/565 (22%), Positives = 249/565 (44%), Gaps = 15/565 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + R + V S D+ + +P + ILG G + Sbjct: 27 ALKNLQRRFQVLVQDSHDVFEIINSDGTIQYISPAVEKILGYKPEERIGKPAY--ELLEP 84 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS---NGDILRYIGI 515 ++ F+ +L + +Q E +++ Q + +R + G IL + Sbjct: 85 TEKYKFKQMLSLAFNHPDQVVQEEIKIKTKAGQEIILSCDMRNKLSEPSIQGVILNWRVS 144 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 ++D + + A D LT +P R +F L+ + + ++++DID+ Sbjct: 145 SSD---RNREDSQAKAPATLDELTRLPARGAFESLLSQHMAEAR--GEEALALIIVDIDR 199 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IN LG GD +L ++RR+ L +L R SG+++ I+ Sbjct: 200 FKYINSYLGYEHGDQLLRQISRRLRLLCTDQVLLCRFSGDQYAIVAARGEGQDDYLPLVE 259 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + P + E ++ ++ S+G + + S ++K+A A+ K G H + + Sbjct: 260 EVLRLFDAPFIVDEHKLDISVSLGISLYPHDAQDSETLVKSAYAALLRGKAAGKKHYQFY 319 Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + ++ D+ A++ + + Y PI+ L E++ +EAL++W HP G IS Sbjct: 320 SADVEHKNYREFLLRRDMQKALKEGQFAVHYQPIVNLYTNEVLAVEALLRWKHPLCGMIS 379 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +EF+ I EE I + ++LE + R W+ + PP+ + IN +S + E Sbjct: 380 PAEFIPIMEETGFIVDMGKWLLEEVCRSHKQWQKEGL-PPLKVSINCSSVQFAEECFVES 438 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +QA++ K P + + +ESV++ N ++ L +L++IGI + +DDFGT S LSYL Sbjct: 439 IQAILDKMQLDPRYLIIEITESVLIDNAKKVIADLQKLQEIGILVAVDDFGTGFSSLSYL 498 Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 D +K + S + + + I S+I +A+ + ++A+ I + L R Sbjct: 499 LTFNIDIIKIDSSFIQNIPTNKTSTIITHSVINLARELNIKLVAEGIESPEQLSHLKRFN 558 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 C Q + P+ + + +++ + Sbjct: 559 CHTGQGYLYSKPIPQHQLAEIIANK 583 >gi|293607662|ref|ZP_06689994.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] gi|292813947|gb|EFF73096.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] Length = 687 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 214/432 (49%), Gaps = 7/432 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ E ++ A D LT +PNR DR+ ++ + V+ D+D +K +ND Sbjct: 255 EANEELVQLALHDTLTKLPNRILLEDRMEQAIESANRHKGY-FAVLFFDLDGFKAVNDAY 313 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L+ L +RI + L+ D +ARL G+ F I+L A+ A + ++IA Sbjct: 314 GHHTGDALLIDLAQRIRQALRTQDTVARLGGDEF-IVLSEVIEPTDAANVADRLIEAIAR 372 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P+ + E+ VT+S+G A + + + +L NA+ AMYHAK GG F S Sbjct: 373 PVMVYGHEVLVTSSVGIAVYPNDGEDTHSLLTNADAAMYHAKRLGGTGYSFFEPSMNADA 432 Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I+ DL LA E + L Y P I+G EAL++W+HP G + +F+ A Sbjct: 433 HEQIELLHDLRLAQERGQFVLHYQPKYEAPAGPIIGAEALLRWNHPTRGLVGPDQFIPTA 492 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I +I +++ R + W + I +NI++ L E +++ +++ Sbjct: 493 EKTGLILSIGEWVINEACRQMREWINA-GQGNWTIAVNISALQFAHASLVETVRSALARH 551 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P+ + L +ES M + E S +L RL +G+++++DDFGT S L YL +P + Sbjct: 552 DVPPACLTLEVTESTAMRDAEASLAVLKRLSGLGVTISIDDFGTGYSSLLYLKRLPATEL 611 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + AI+ +I+ +A+ + I+A+ + K LT +GCD +Q Sbjct: 612 KIDRGFVNQLENDNEDAAIVSAIVALAQQLNLRIVAEGVETAAQQKFLTGLGCDSLQGFL 671 Query: 940 VASPLGFNSILK 951 + P+ L+ Sbjct: 672 LGRPMPATEFLE 683 >gi|229491950|ref|ZP_04385770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodococcus erythropolis SK121] gi|229321163|gb|EEN86964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Rhodococcus erythropolis SK121] Length = 791 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 169/777 (21%), Positives = 319/777 (41%), Gaps = 52/777 (6%) Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272 + + W L LS +V L + ++R ++ S I F + Sbjct: 32 LNRRLEFTAGILPWAFLIAAIA----LSTIVVLLPADTGMFRWVWPSVVAVSSIAFSLYW 87 Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332 L +R T G+ I ++ + + + ++ + + + Sbjct: 88 LGRSRLGISESQTTELGVLTIQVVVWGVLLACLALVLFPILDPGNELVLTSTLMGGIAVG 147 Query: 333 GYERAVL--LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390 + + WI + + ++ L ++ +V L T++ Sbjct: 148 VFPTLMFRGFTLIWIGLVGLGLAGGFWTEPEPSRYVLVGVL---MIFLVSLYSGTLLLAK 204 Query: 391 LATGYFSQGIFSDGER--QSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 L + ++ ER L + G+ D +W+ D T + A +GL + Sbjct: 205 LFDKRLHAELVAEDERDLVELLLNDLEDGAQDWLWETDSRGIASTVSYRFAEQVGLPAAQ 264 Query: 445 MHGPIRNWLPY--------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 + G + + + D + +R +Q R W Sbjct: 265 IRGRTMHEILIGIGASRTDVGRKSLDLLAANFQAGTAFRDLTMQVVVR-----GDTRWWS 319 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 + P S +G + G+ +DIT + IL A D+LTG+ NR SF +L++ + Sbjct: 320 MSGHPGSG-DGATYGWRGVGSDITHSYHQRQNILRLAEIDSLTGLRNRYSFNAQLSSRI- 377 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 D R + ++D+D +K IND LG +GDDVL + R+ +L+ +I RL G+ Sbjct: 378 ----RDGHRVWLAILDLDNFKSINDRLGHHIGDDVLRDVASRLHSVLRSNEICGRLGGDE 433 Query: 617 FGIILISEN-----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 F I ++ ++ + S P +L+ +I + AS+G+ S + Sbjct: 434 FAIAFDDVAFDDIGSADEVEKRFQTILDSFERPFSLVGNQIRIRASLGYGSMPDDADSLE 493 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729 +++ A+LA+YHAK G N + +F + R DL A+ + E LVY P + Sbjct: 494 DLVIVADLALYHAKESGRNQIRAFDATLRDRATGRARALLDLRRALIDEEFELVYQPQVS 553 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 +VG EAL++W+HP G +S +F+ +AEE +I I +L +W + Sbjct: 554 AATGVVVGFEALLRWNHPTSGLVSPGDFISVAEETGLIVPIGAGVLRAACTAATTWPE-- 611 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +N++ L + + ++ + + PSR+++ +ES+V+ + + R +L Sbjct: 612 ---DIRVAVNVSQVQLRSSRYVDSVRRTLIEVNLHPSRLEIEVTESLVIDDAD--RDVLV 666 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK----RIAILRSIIPM 905 +L +GI++ +DDFGT S ++ L +P D +K + + + R A+LR++I + Sbjct: 667 QLSALGIAIAMDDFGTGFSSVASLARLPLDRLKIDRAFVAPLDADPSNSRFAVLRAVIAI 726 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962 AK++ +A+ + E +T GCD IQ P+ I L R Sbjct: 727 AKSLGLDTVAEGVETERQRAIVTECGCDVIQGYLEGMPIRAAEIPHYLNGRLGGSSR 783 >gi|169826660|ref|YP_001696818.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41] gi|168991148|gb|ACA38688.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41] Length = 782 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 113/426 (26%), Positives = 223/426 (52%), Gaps = 6/426 (1%) Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592 AF D LT +PNR+ F+ L + ++ + + +++ ID+D +K++ND LG + GD++L Sbjct: 351 AFYDPLTNLPNRRQFVFTLEQAITQAS-SEQSKFSIIFIDVDNFKQVNDTLGHSAGDELL 409 Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652 + ++ + ++ARL G+ F I+L + + ++R S P + + Sbjct: 410 QKVAEQLQSSIGSEGVVARLGGDEFVILLEHRADHAYLEKMLSSLRDSFVQPFTIHGQIT 469 Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710 V S+G AS+ +T E+LK+A++AMY AK GGN+ F + I++ Sbjct: 470 FVQMSLGIASYPIDGVTQEELLKHADIAMYKAKESGGNNHRFFDNKMNELVIKKNQIEQM 529 Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770 + LA+ +E+ + Y P I ++ G EAL++W P+ G +S +F+ IAE+ I I Sbjct: 530 IRLALARNEINVHYQPQIEPATGKLRGFEALVRWKSPELGFVSPEDFIPIAEKTGFITQI 589 Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830 + +++ + + + Q P + +NI++ L + + +Q ++++T P +++ Sbjct: 590 DEWVMYQACLKNVELQHQFGY-PFLMSVNISALQLERTDFVDKVQLILNETKLKPEYLEI 648 Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890 +ES+++ + E S +L +L +G+ + DDFGT S L+YL +P T+K + SL+ Sbjct: 649 EITESILVESFESSICILRKLENLGVKIAQDDFGTGYSSLNYLSLLPIHTLKIDRSLIQN 708 Query: 891 STE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 T I+ SII +A + ++A+ + + L CD++Q + + P+ + Sbjct: 709 MTSATAEKTIIESIIQLAHKLGHDVVAEGVETKEQYILLKEWNCDFVQGYYFSRPVSEDM 768 Query: 949 ILKLLK 954 +++ L Sbjct: 769 LVEYLT 774 >gi|39933447|ref|NP_945723.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|39647293|emb|CAE25814.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains [Rhodopseudomonas palustris CGA009] Length = 838 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 134/564 (23%), Positives = 257/564 (45%), Gaps = 14/564 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q A Q + E L W + R +P++ +LGL + Sbjct: 264 ITQLAAARTLLDQRTGALEEAHRL----GRIGTWTHRLDTGRTVWSPELYQLLGLEPDAF 319 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 PY +D I + + R+ D + I + S Sbjct: 320 EPTYEGTEPYFLDDDAARLLKIQKRVLRTSTTE-ATDIRILHTDGTPRDLAIICKAEI-S 377 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 NG+++ IG A D+T++K++ + A+ D LTG+ NR + +L + + + Sbjct: 378 NGNVIGLIGTAQDVTDRKEAERRLEQLAYTDPLTGLANRALYKRKLADLFENPMAEHGQN 437 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-E 624 + +ID+D++K++ND LG + GD +L+ + + + L +AR+ G+ F ++ S Sbjct: 438 -ALYLIDLDRFKEVNDSLGHSTGDSLLIHVAGVLRQELGPQAFIARIGGDEFAVLTNSPN 496 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A + +++P+ L E E + A+IG A T+ + +NA+LA+Y A Sbjct: 497 TSVEATTALADRLIAKLSVPVELAEGEACIGATIGIAILPEHGATAEKASRNADLALYMA 556 Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G + F + ++ + L AV++ L Y P I L ++G EAL+ Sbjct: 557 KEAGRGRAQLFEPMYAEAVDQKLDLGRRLRHAVDSGGLNTHYQPQIDLKTGRVIGFEALL 616 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G IS +EF+ IAE +I + ++L + + W D P I +N++ Sbjct: 617 RWSHPERGPISPAEFIPIAETTGLIVDLGHWVLRDACKQMRGWLDAGL-PARTISVNVSP 675 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLD 861 + + + + + +++ T P + L +E++ + + ++ L L K+GI L LD Sbjct: 676 AQIWNGDFEKVVATVLADTGLPPELLCLELTENLFVDHTKQKVSTTLAALSKLGIQLALD 735 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919 DFG+ S L YL +PF+ +K + S + G ++ +L II ++ + +++A+ Sbjct: 736 DFGSGYSSLGYLTRLPFNRLKIDRSFVDGIATVPEKRKLLGGIIALSHGLGMSVVAEGAE 795 Query: 920 GEIDIKELTRMGCDYIQDSHVASP 943 + ++ L CD++Q + P Sbjct: 796 LQAEVDLLAAFDCDFVQGYAFSKP 819 Score = 47.3 bits (111), Expect = 0.014, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 20/148 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT------TPDIATI 437 F +++ + + +R + V + D W+ + + T+ Sbjct: 131 FGIVRDATPETSALRQLAVSEQRLADFVSTASDWCWESGPDHRLLPYPKSLDGNAALQTV 190 Query: 438 L--GLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 G A + +H +D + R + + D Sbjct: 191 ASGGKARWELAYAPDEEGSMALHRDDMEAHR-----------PFRDFIYTSIGNDGSRII 239 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQ 522 + +P+ +G L Y G A+DIT+ Sbjct: 240 ISTSGKPIFADDGTFLGYRGTASDITQL 267 Score = 38.4 bits (88), Expect = 5.8, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 5/79 (6%) Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 + + + R E ++ D + ++ P ++NG + R GI D Sbjct: 78 DSHAILQAHYAACWTEGR-PFAVETKLIKPDGRLLDCVVHGEPEFDANGQVQRVFGIVRD 136 Query: 519 IT----EQKKSLEGILCNA 533 T ++ A Sbjct: 137 ATPETSALRQLAVSEQRLA 155 >gi|269965387|ref|ZP_06179507.1| ScrC (sensory box/GGDEF family protein) [Vibrio alginolyticus 40B] gi|269830033|gb|EEZ84262.1| ScrC (sensory box/GGDEF family protein) [Vibrio alginolyticus 40B] Length = 776 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 121/442 (27%), Positives = 219/442 (49%), Gaps = 9/442 (2%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I +K S + + A D LT +PNR +RL L ++ + + VM ID+D +K+ Sbjct: 335 IERRKASEKELAFQAKYDTLTNLPNRSYGSERLALELIRASRSGS-KVLVMFIDLDHFKQ 393 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G VGD++L +R+ ++ + D+LAR+ G+ F +++ ++ A ++ Sbjct: 394 INDSMGHFVGDEILKLSAQRLYQVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 453 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P E +++S+G + + + ++L A++AMY AK G + + + Sbjct: 454 SAFNDPFVWNNHEFFLSSSVGMSVFPDDGDNAEQLLACADMAMYRAKQDGRDGFCFYNHN 513 Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+ N L L Y PII L +IVG EAL++W+ K+G ++ E Sbjct: 514 MNQDLQRYLDLENRLRSAISNQLLELYYQPIIELSSGKIVGAEALMRWNDDKYGFVNPEE 573 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815 F+ IAE+ +I I F +++ R W+ P+F+ +N +S L ++ Sbjct: 574 FISIAEKNGLIHQIGEFAIQQACRQAAQWQSL---TPLFVSVNFSSVQFRYCERLLTFIK 630 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ + + +ES++ + +L LR +G LT+DDFGT S LSYL Sbjct: 631 HSLEESGLPSDKFDIEVTESLLFNHDSELLDMLNNLRALGTKLTIDDFGTGYSALSYLQK 690 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S M + ++ II MAK ++ I+A+ I + + L + C+ Sbjct: 691 FPFDRLKIDRSFMQNMFENDSDRELVNVIIAMAKALDLKIVAEGIEEQRHVDYLKNLNCE 750 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 + Q H + PL LL + Sbjct: 751 FGQGFHYSRPLPAKDFEALLAK 772 >gi|330446221|ref|ZP_08309873.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490412|dbj|GAA04370.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 984 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 123/570 (21%), Positives = 265/570 (46%), Gaps = 24/570 (4%) Query: 401 FSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYI 456 S ++ +LA + + + D VT + G +S + G R Sbjct: 415 VSTVQQLNLAKTVFDNTSECIVITDSNNHIVTVNQSFEAVTGYSSEEVIGKDPRILASGF 474 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H D+ + + D G+ + + R + + + I + + N +++ Y+G+ Sbjct: 475 H--DKAFYEEMWDCV--EHAGQWKGQLYNRRKNGNVYPEEMTINKVEDDNHEVVNYVGVF 530 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-----SATDDNLRPTVMVI 571 +DI+ ++++ + +L A D LT + NR+ F +R+ ++ N +V+ I Sbjct: 531 HDISVRQQTEKELLFYANNDALTTLMNRRCFTERVEQEINSVCEQVKKGGCNQEFSVLFI 590 Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631 D+D +K IND+ G VGD +L + + + ++ R G+ F I+L ++++ Sbjct: 591 DLDDFKSINDLYGHDVGDKLLKHIAEILLDFCSKETLVCRYGGDEFAILLKGKSSA-FAK 649 Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 +A + +++++PI + + VT SIG +++ S +T +LKNA+ AMY K G N Sbjct: 650 QYAQKLMRALSVPILIDALQFNVTISIGISTYPESGVTHQALLKNADYAMYEQKRNGRNG 709 Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + + +K+ L A+ ++ + Y PI+ + +I EAL +W + Sbjct: 710 ISIYDAQLQSEYIRKLRLKDRLIKAIAEKKIQVYYQPIVDIETGKICKFEALTRWFDEEE 769 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G IS F+ +AE +I + + E+ RD+ +Q I + IN + ++ Sbjct: 770 GYISPVIFIEMAETYGLIGQLGRVVFEQACRDLAYMHNQGYD-DICMSINRSVREFA--- 825 Query: 810 LCEG--MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L + + +I + + ++I + +ES + LL + GI + +DDFGT Sbjct: 826 LYDQKYIYDIIDEHGLAYNKIMIEITESAALDEGNNILELLSEFAQKGICVAIDDFGTGY 885 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S +S + + +K + + + + + ++ ++ M++ + ++A+ + + ++ Sbjct: 886 SSMSAIIANKPNVIKIDRNFIVDIEQSVESQILVSLVMDMSRKLHLDVVAEGVETKAQLQ 945 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L++MGC YIQ + + + ++ + LLK+ Sbjct: 946 LLSKMGCHYIQGFYFSPAVNIDAAMVLLKQ 975 Score = 79.6 bits (195), Expect = 3e-12, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 15/164 (9%) Query: 372 VGGLVLIVILIGFTVIQHVLA-TGYFSQGIFSDGERQSLAVLG-------------SGDI 417 V G+V+ + L F + Q + + + S+ + +L + Sbjct: 117 VIGIVVCLFLHPFVLSQEQIDWSEEMGHLLGSELQYLALLSEQKLLLGEMEASQRVAKLG 176 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 W WD++ + T + + I L +H ++ IH DR+ T +++ + Sbjct: 177 NWQWDVLTNTYTWSKEACRIYELE-NCLHPDLKFVHSSIHPEDRERVITFMNNIITSEHT 235 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 +R+ + ++ + + NG GI DI+E Sbjct: 236 GYNIIYRLLLPSGKIKYVRKESVLIKDDNGKTTLIRGIIQDISE 279 Score = 65.7 bits (159), Expect = 4e-08, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 7/143 (4%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 +IQ + + S + ++ + + VW++ T+P + IL + Sbjct: 272 GIIQDISEFYHISTELSKTSDKLHITYNAVAEGVWEYHFNTREKVTSPKVWDILKIE-ER 330 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA---DNQF--HWMIIRI 499 + + + IH ++R + L ++FR+ + + HW + Sbjct: 331 VIHSLYELMRLIHKDERKVVLDAIRKLRNNDSQSLCFDFRLNPKYVTNISYIEHWFQCQG 390 Query: 500 RPM-SNSNGDILRYIGIANDITE 521 + N+ GD + G+ DIT+ Sbjct: 391 SVVAVNAFGDTEKVAGVLTDITD 413 >gi|144898379|emb|CAM75243.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1] Length = 571 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 128/572 (22%), Positives = 250/572 (43%), Gaps = 16/572 (2%) Query: 398 QGIFSDGER-------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 Q ++ ER A + + V + P I G + G Sbjct: 2 QQRLAELERENAELRLFRAAFDMAAEAVAVCGPDWRLLVVNPAFTAITGFLPEEVCGRHA 61 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 L + F +D + R + E R + + + + + G Sbjct: 62 EMLYASLGD--GTFLVEVDEHLR-RGSSWEGEVWSRRKTGEPYRQSLSVACEHDMRGGPS 118 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 R++ + D++E + + E + ++ D LT +PNR LDRL L L+ +N R ++ Sbjct: 119 RHVLMFRDVSEARDNAEKLWRHSNYDTLTELPNRGLLLDRLLQALVLAGR-ENCRAALLF 177 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 I +D +K IND LG+ VGD VL R G L+ D L R G+ F +L + ++ Sbjct: 178 IGLDGFKTINDTLGMTVGDMVLRESALRFGRCLRKGDTLGRFGGDEFIAVLPHIDTIDEV 237 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + +S+ P+ + +I ++ SIG + W +++N+ A+ HAK G Sbjct: 238 EAVVRTILESLQEPLLIEANQILLSCSIGISLWPGDGEDVETLMRNSSSALEHAKAAGRG 297 Query: 691 HVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 F + + R + +L A+E++E LV+ P++ L D + G EAL++W + Sbjct: 298 TFRFFTPTMDARAQARSRLAGELSEALEHNEFSLVFQPVVNLADGSVGGAEALLRWQNRY 357 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G ++ +F+ +AEE+ +I I ++ R+ +W+ + I IN++ + + Sbjct: 358 IGAVNPDQFVPLAEEMGLILPIGEWLTLAACREAKAWQQAGLG-DLRIAINVSPRQVQQT 416 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 ++ ++ + ++ SP + + +ES+++ + L R+R +G + +DDFGT + Sbjct: 417 DIATTLRRALDESGLSPRLVTVEITESLILNSGTEIIRKLERVRDLGARIAVDDFGTGYA 476 Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 LSYL + P D +K + S ++ + ++ +II + ++ ++ + + Sbjct: 477 SLSYLKHFPVDILKIDRSFVSEALNNADDARLIEAIIALGHSLGMKVVGEGVETRQQQAF 536 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 L GCD Q + PL ++ P Sbjct: 537 LVERGCDLAQGYRFSPPLSAERFRDFVRNFEP 568 >gi|298500769|ref|ZP_07010572.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae MAK 757] gi|297540550|gb|EFH76608.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae MAK 757] Length = 684 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 131/572 (22%), Positives = 254/572 (44%), Gaps = 32/572 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182 Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +I + F + L S + + R +E +++ + + Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234 Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + D E K+ +A D+LTG+ NR F RL + + Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL ++ Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + I P +L + SIG + + +L+NA+ AMY AK R Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405 Query: 688 GGNH--VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + +++ R+ ++ +L A++ + L + Y P + D I G EAL++W Sbjct: 406 GRNRLIKSNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS F+ +AE+ +I+ + ++ + + W + P + INI+ + Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+G +L++DDFGT Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|115526079|ref|YP_782990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] gi|115520026|gb|ABJ08010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 894 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 136/581 (23%), Positives = 264/581 (45%), Gaps = 21/581 (3%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGL 440 + + S+ + + + + + + + TIL Sbjct: 312 FLIALFDDITEKRELSRELVNAKKFLERVIDNVPICLTVQSAVDGRYLLANRSAETILNR 371 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 G R + D+ R L E + D + R + Sbjct: 372 LREDAIG--RTVAEIFDPQE-GKLIAERDAIAIKRGQLLAEEQPISTKDG-LRMFVTRRQ 427 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + G+ I D+T+Q+++ + A+ D LT +PNR +FL LT +++ + Sbjct: 428 TVLDEFGEPQYLIKTHEDVTDQRQTEARMAHMAYHDGLTELPNRAAFLQALTQMIE-ACC 486 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 D V+ +D+D K+INDV G AVGD +L+ + RI +++RLSG+ FG+I Sbjct: 487 DTADEFAVLSVDLDGLKEINDVFGHAVGDKLLIEVAERIKTAS-RGGVVSRLSGDEFGLI 545 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + D A + +++ + + + + + G A++ ++ ++ +L NA A Sbjct: 546 IDGPQ-PSSALDLADEVARAVGEGFQIDGKAMRIGVTTGIATFPNNGQDAASLLANAGAA 604 Query: 681 MYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE---- 734 ++ AK RG + + DR ++ +DL A++N E+ L Y P R + Sbjct: 605 LFRAKAKMRGSVSIYEPEMDQQIRDRRVLHQDLSKAIKNGEISLYYQPQARGHGQTGHDD 664 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 I G EAL +W HP G + S+F+ +AEE +I + ++L R+ SW P+ Sbjct: 665 ITGFEALARWRHPTRGFVPPSDFIPLAEESGLIVELGEWILREACREAASWAK-----PL 719 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ L+++L + ++ +T PSR++L +E V++ + +R LL RL + Sbjct: 720 QVAVNLSPAQFLNSDLVSAVHRILLETGLKPSRLELEITEGVLIEDFDRGLSLLRRLTSL 779 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+ +++DDFG+ S L+YL PFD +K + + + + AI+R++I + + + Sbjct: 780 GVKISMDDFGSGYSSLTYLQAFPFDKIKIDRAFVMNLGHNPQSAAIVRAVIGLGHGLGVS 839 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 I+A+ + + + L + GCD +Q + P +L+ Sbjct: 840 IVAEGVETQQQLDFLVQEGCDAVQGYFIGRPHPIEHYARLV 880 >gi|320323919|gb|EFW80003.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328056|gb|EFW84061.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330875742|gb|EGH09891.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 732 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 128/581 (22%), Positives = 231/581 (39%), Gaps = 17/581 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +V+ ++ + + R S D + D ++ I Sbjct: 146 LVLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELI 205 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494 G S G + I R L + D Sbjct: 206 FGHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRAASGGPTFIIGKSINLTAIHRDGHTIP 263 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + + G+ I D+T++ ++ + + A D+LTG+ NR + R+ Sbjct: 264 IELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 D L +++ID+D +K +ND LG A GD VL ++R+ E + ++ARL G Sbjct: 322 C-----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGG 376 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F + L + +A+ I PI + I + ASIG + + S +ML Sbjct: 377 DEFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQML 436 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE 556 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 -FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +G+ + DDFGT + LS L P +K + S ++G ++K I+ ++I +A Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFN 675 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + A+ I + CD Q P+ + + Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716 >gi|312962173|ref|ZP_07776665.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas fluorescens WH6] gi|311283510|gb|EFQ62099.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas fluorescens WH6] Length = 819 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 118/595 (19%), Positives = 247/595 (41%), Gaps = 13/595 (2%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 R+ ++ + + +++L + + F++ + + ER + + GD V Sbjct: 201 RMILRLLLITNLATALGLIVLALLRTRKLLAQRHAFAEALKDEKERAQITLESIGDGVIT 260 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGR 478 D+ P + S G P+ + + + + T+++ + R RG Sbjct: 261 TDVDGAITYMNPAAEALTHWKSVQAQGLPLAALFNLLDDDAQPDGLTLIEHILKGRLRGG 320 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538 ++ ++ D + + P+ ++ G I + + +D+T++++ + + A D L Sbjct: 321 SEHSKTIQRVDGSTVSVTLVGAPIRSA-GKISGAVLVLHDMTQERQYIANLSWQATHDAL 379 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+ NR+ F RL +L+ + R +M +D+D++K +ND G A GD++L + Sbjct: 380 TGLANRREFEYRLEQVLNPA-RHQGERHALMFLDLDQFKLVNDTCGHAAGDELLRHICAL 438 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + L+ D LARL G+ FGI+L + ++ R T SI Sbjct: 439 LQSDLREGDTLARLGGDEFGILLENCPAPTAEKIAESLRHTVQSLHFVWKGRPFMTTVSI 498 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLA 714 G +++ T L+ A++A Y AK +G N V+ + R + + L +A Sbjct: 499 GLVHISNTPTTLESSLRAADMACYMAKEKGRNRVQVYHSDDSELSVRFGEMAWVQRLHMA 558 Query: 715 VENSELYLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 +E + L I + +E L++ I F+ AE ++ +++ Sbjct: 559 LEENRFCLYAQEIASLGHTEAGSGHIEILLRLHDEAGRIILPDSFIPAAERYGLMTSLDR 618 Query: 773 FMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 +++E + + I + P+ + IN++ + D++ ++ P I Sbjct: 619 WVVENVFKIIARCMHERPARPMAMCAINLSGITIGDDDFLGFLREKFDSYRIPPEMICFE 678 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +E+ + N + + L+ +G +LDDF S +YL ++P D +K +GS + Sbjct: 679 ITETSAIANLGSAIRFINELKALGCHFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDM 738 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 A++ I + + IA+ + + L +G DY Q + P Sbjct: 739 LDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLIERPQ 793 >gi|16330004|ref|NP_440732.1| hypothetical protein slr2077 [Synechocystis sp. PCC 6803] gi|1652490|dbj|BAA17412.1| slr2077 [Synechocystis sp. PCC 6803] Length = 732 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 122/436 (27%), Positives = 218/436 (50%), Gaps = 4/436 (0%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 +K S + A D LTG+ NR L RL + R ++ ID+D +K IND Sbjct: 293 RKASQNQLSYQALHDTLTGLANRALLLQRLEFAGHQIKNNPKSRFALLFIDLDHFKLIND 352 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G +VGD +L+ + ++ L+ D+ RL G+ F I L S + D A + + Sbjct: 353 SWGHSVGDALLIKIAEKLQINLRETDLAVRLGGDEFVIFLESITEIKQAIDVAERILIHL 412 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 +P+ + +E+ V ASIG + ++++A++AMY AK+ G N F S + Sbjct: 413 RLPVQIQAKELFVKASIGIVIGSIHYYEPERLIRDADIAMYQAKNNGRNQYAVFDPSMHQ 472 Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + R+ ++ D A+E L L Y PII L+++ + G EALI+W HP+ G I+ + + Sbjct: 473 TILERLSLEHDFRKALEQETLELYYQPIISLVNDRLQGFEALIRWQHPEKGYINPEQLIA 532 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 IAEE +I + +++++ + I WR+ N I++ IN++ + E ++ ++ Sbjct: 533 IAEETGLIIILGQWIMQQACQQIAQWREITNDDKIYVSINLSPNQICRPLFVEEIENILQ 592 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 T + L +E V++ + E L +++ GI +++DDFGT S LSYL +P + Sbjct: 593 TTKLDGDALVLEITEGVLIQHLEIVAECLKKIKSHGIKISIDDFGTGYSSLSYLYRLPVN 652 Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + TE +I+++II + ++ +A+ + + L +MGC Q Sbjct: 653 YLKIDRSFINQITEDSPSQSIVKTIITLGDLLDIQTVAEGVETNDQLNLLKKMGCGLGQG 712 Query: 938 SHVASPLGFNSILKLL 953 + P+ I L Sbjct: 713 YFWSEPMTVREIDCFL 728 >gi|113867267|ref|YP_725756.1| signal transduction protein [Ralstonia eutropha H16] gi|113526043|emb|CAJ92388.1| predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains [Ralstonia eutropha H16] Length = 1124 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 124/440 (28%), Positives = 217/440 (49%), Gaps = 6/440 (1%) Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 ++++ E + A D LTG+PNR F L + V+ +D+D++K +ND Sbjct: 672 RRQAEENLRFIANHDALTGLPNRLMFKAEFEQALTRARASGQALH-VIFVDLDEFKVVND 730 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 +G GD VL + R+ L+ +++ R G+ F ++L + +S + ++ ++ Sbjct: 731 TIGHNAGDIVLREMADRLRGSLEEVELITRFGGDEFVVLLDPKGDSTILDRTIARIQAAL 790 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 A + E E+ +TASIG +S+ +LK+A+LAMY AK G N + + Sbjct: 791 APGFVVNESELRMTASIGISSFPEDGSDWQTLLKHADLAMYGAKQLGKNGYQFYCRGMSA 850 Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 S + ++ L A+E E L Y P I L +EALI+W HP+ G + +F+ Sbjct: 851 SLQRRIDMESHLHRALEQDEFILYYQPRIALASGACTAVEALIRWRHPELGLVMPGDFIP 910 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 AE+ I I + L R +WR Q PP+ + +N++++ D L + + Sbjct: 911 FAEQSGAIVEIGAWALREACRQNAAWRAQGL-PPVRVSVNLSARQFADKSLRLTIIDALR 969 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 + + ++L +ES+VM + E++ L RL++ G+ L +DDFGT S L+YL P D Sbjct: 970 QAGLPGNLLELELTESMVMRDAEQASSWLSRLKRTGVRLAIDDFGTGYSSLAYLSRFPID 1029 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 TVK +GS + + I ++I + + ++A+ + E+ ++ L R GCD +Q Sbjct: 1030 TVKIDGSFVRYIPESRSDTQITSAVIGLGHRLGLEVVAEGVENEVQLEFLRREGCDEVQG 1089 Query: 938 SHVASPLGFNSILKLLKERF 957 + + PL I L R Sbjct: 1090 YYFSHPLPPAKITAFLASRM 1109 Score = 65.7 bits (159), Expect = 4e-08, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 67/197 (34%), Gaps = 10/197 (5%) Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL--IVILIGFTVIQHVLATGYFSQGIF 401 W++ F + L ++ L+ ++L + + + + V + + Sbjct: 338 WVIAFAADAKAISGPQRYLPGLVVISGLIISVLLGWLAYALSSSRARAVAVADQMTHSLR 397 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + A + W D+ +D + ++A +LGL I R Sbjct: 398 DSQAALAEAQQIAHLGDWRIDLDQDIAHFSQEMARLLGLRGD--KPTPEALFQAIDAGHR 455 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 R + + + R ++E R+ + W+ + + +LR G A DI++ Sbjct: 456 AVLRERMRTAL-QDRQPFEFECPYRSRRGRRGWLHLIGHAHGAPDSAVLR--GTAQDISQ 512 Query: 522 QKKSLE---GILCNAFQ 535 ++ + + A Sbjct: 513 RRSAEQARTQEHQIALH 529 >gi|163855670|ref|YP_001629968.1| signalling protein [Bordetella petrii DSM 12804] gi|163259398|emb|CAP41698.1| probable signalling protein [Bordetella petrii] Length = 703 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 125/436 (28%), Positives = 219/436 (50%), Gaps = 7/436 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E + + + A DNLT +PNR DRL ++ + + +R +M +D+D +K +N Sbjct: 251 ELADANQELTYLALHDNLTKLPNRVLLEDRLGQAMERARR-EKIRFALMFMDLDGFKAVN 309 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 DV G +GD +LV+ RI E + D +AR+ G+ F +L + A + + Sbjct: 310 DVYGHLMGDMLLVAAAGRIVENTRGSDTVARVGGDEFV-VLAQVDEPTDAGVLASKLVAA 368 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699 I P + E+ V+ SIG A + + + E+L NA+ AMYH K G + F S Sbjct: 369 IGEPYLVNGHELHVSTSIGIAIYPGNGESQDELLTNADAAMYHVKGTGRDDYCFFEASMT 428 Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 +V + +DL +A++ +EL L Y P I GLEAL++W HP G + F+ Sbjct: 429 ANAHGQVQLLQDLRMALKRNELVLYYQPKFTAPHGPITGLEALLRWKHPAHGMLGPVSFI 488 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AE+ +I I ++L R + WRD I +N+++ L + L E ++ + Sbjct: 489 PLAEKTGLIVPIGEWVLNEACRQMAEWRDD-GREDWTIAVNLSAVQLAHSGLVEAVRGAL 547 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + P R+ L +ES M + + S+ +L RL IG+ +++DDFGT S L YL +P Sbjct: 548 DRHGLEPHRLVLEITESTAMRDVDSSQTILQRLHDIGVRISIDDFGTGYSSLLYLKRLPA 607 Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + + + AI+ +I+ + + ++ ++A+ + + LT +GCD +Q Sbjct: 608 SELKIDRCFVHDLACGTEDAAIVSAIVALGQTLDLRVVAEGVETAEQQEFLTSLGCDTLQ 667 Query: 937 DSHVASPLGFNSILKL 952 +A P+ + ++ L Sbjct: 668 GYLLAYPMQADEVIVL 683 >gi|329896030|ref|ZP_08271266.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC3088] gi|328921990|gb|EGG29354.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC3088] Length = 594 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 131/462 (28%), Positives = 239/462 (51%), Gaps = 25/462 (5%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 + K+ + + A+ D LT +PNR+SF + L ++ L+ + + VM ID+D +K+ Sbjct: 133 VQALKRQEDRLRYLAYYDPLTSLPNRRSFTEELDRLV-LTHHNKDAHVAVMFIDLDHFKR 191 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPD--------------------ILARLSGNRFG 618 IND +G A GD +LV + +R+ + L I+ARL G+ F Sbjct: 192 INDSIGHARGDRLLVEIAKRLTDQLSDYGDINILSDVGDYQYLGTEESIIIARLGGDEFT 251 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 +++ + + K+ D A + S++ P+ L VT SIG A + +++NA+ Sbjct: 252 VVIPNVEDDEKVTDIAKRILHSLSQPVELQSHNPVVTPSIGIALFPKDGTDPDTLVRNAD 311 Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMY AK G + ++ + + ++E+L A+ ++L L Y P++ D + Sbjct: 312 TAMYAAKSMGRSCYRFYKDDMNSSAVELLKMEEELREALVENQLELHYQPLVNSSDGALA 371 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 GLEAL++W+HP+ G IS EF+ +AE+ I + ++++ +D W +QA I Sbjct: 372 GLEALVRWNHPERGMISPGEFIPVAEQTGQIIDLTAWVMKEAIKDCKIW-EQAGFADFKI 430 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 INI++ + ++L + L + ++ R++L +ES +M + + + L L +G+ Sbjct: 431 SINISALEFNHDDLASHVTDLFDEVDFNKHRVQLELTESAIMTDAQANIKKLSELCDLGV 490 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIA 915 +L +DDFGT S LSYL P + +K + S + G TE AI+ +I +AK + ++A Sbjct: 491 TLAVDDFGTGYSSLSYLRQFPINVLKIDRSFVMGIGTENGNAIVDAITSLAKALHLGLVA 550 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + + + + L GCD +Q +++ P+ SI+ LL + F Sbjct: 551 EGVETKEQMDYLVASGCDTLQGFYLSRPVPAKSIIGLLTKPF 592 >gi|71907617|ref|YP_285204.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB] gi|71847238|gb|AAZ46734.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB] Length = 695 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 124/437 (28%), Positives = 227/437 (51%), Gaps = 7/437 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I+E++++ + A+ D LTG+ NR+ F++RL L + V+ ID+D++K+ Sbjct: 256 ISERRQAQSKLNYLAYHDPLTGLANRRCFIERLEESLSEGERHGE-KLAVLYIDLDQFKQ 314 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG VGD++LVS+ R+ E ++ D+LARL G+ F ++ + + ++ A + Sbjct: 315 VNDSLGHGVGDELLVSVAARLSEHVRLIDMLARLGGDEFICLMEAARSEDEVELLAREII 374 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P L + E+ +TAS+G + S + ++++NA+ AMY AK G + + Sbjct: 375 AAFEYPFKLGDHELFLTASVGISLCPSDGNSVLDLMRNADTAMYRAKMLGRGNFHFYTAE 434 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +R+ ++ L A++N EL + P + ++VG EAL++W+ P+ G + Sbjct: 435 MTREAQERIQMENLLRRALDNGELSVHLQPQVDSRSGQLVGAEALVRWNSPELGQVMPIR 494 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I + ++L R + WR P + +N++ K L E + + Sbjct: 495 FIPLAEDSGLIIGLGNWVLRETCRQFMQWRMSGFELP-QVSVNLSVKQLERPEFIDVLDK 553 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P+ +KL +ESVVM + L RLR +GISL LDDFGT S LSYL + Sbjct: 554 ILDETGMDPTLLKLELTESVVMAVGDAFTP-LERLRDLGISLALDDFGTGYSSLSYLKML 612 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + G AI+R+I+ +A+++ ++A+ + L +GC+ Sbjct: 613 PVQQLKIDRSFVEGIGRNSGDEAIIRTIMELARSLGFEVVAEGVETVEQANFLADLGCEQ 672 Query: 935 IQDSHVASPLGFNSILK 951 +Q + Sbjct: 673 LQGFLHGQAVSPVEFRA 689 >gi|71734101|ref|YP_275409.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554654|gb|AAZ33865.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 732 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 128/581 (22%), Positives = 231/581 (39%), Gaps = 17/581 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +V+ ++ + + R S D + D ++ I Sbjct: 146 LVLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELI 205 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494 G S G + I R L + D Sbjct: 206 FGHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVASGGPTFIIGKSINLTAIHRDGHTIP 263 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + + G+ I D+T++ ++ + + A D+LTG+ NR + R+ Sbjct: 264 IELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 D L +++ID+D +K +ND LG A GD VL ++R+ E + ++ARL G Sbjct: 322 C-----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGG 376 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F + L + +A+ I PI + I + ASIG + + S +ML Sbjct: 377 DEFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQML 436 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE 556 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 -FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +G+ + DDFGT + LS L P +K + S ++G ++K I+ ++I +A Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFN 675 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + A+ I + CD Q P+ + + Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716 >gi|146284167|ref|YP_001174320.1| sensory box protein [Pseudomonas stutzeri A1501] gi|145572372|gb|ABP81478.1| sensory box protein [Pseudomonas stutzeri A1501] Length = 890 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 151/582 (25%), Positives = 261/582 (44%), Gaps = 16/582 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + A +Q S L AV S D P I Sbjct: 315 AGELADQYAQVLANQQRLSATHMLGLFQRAVEQSASAFILVDRDGRVEYVNPAFTAISQF 374 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + G L + + S + + Q EFR R + + +W + I Sbjct: 375 SESEVRGQRLADLKAL--ENLGELLFDTSSVLAHSN-SWQGEFRSRRKNLEPYWGQLSIS 431 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + N +G + YIGI DIT K + + I A+ DNLT + NR F+ + A Sbjct: 432 KVFNDDGMLTHYIGIYEDITRSKLAHQHIERLAYTDNLTNLGNRPFFIRSIEERFAAGAE 491 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 R ++++DID +K+IND LG GD +L SL RR+ L +LAR + N F ++ Sbjct: 492 ---PRLCLLLVDIDNFKRINDSLGHQTGDKLLTSLARRLRNGLSQQSVLARFASNEFALL 548 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + I A + + + P+ + ++ I+V+ S+G A ++K+A A Sbjct: 549 FDDKGLEEGI-RLADQVLRILDKPLFVDKQLISVSGSLGLACSPQHGRDPETLMKHAGQA 607 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 ++ AK G N V+ F + + + +L A+ +EL + Y P + L + GL Sbjct: 608 LHKAKANGKNQVQIFTEALHAEANYKLFVENNLRRALLQNELEVFYQPKLCLHTGRLQGL 667 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP+ G I +F+ +AEE +I I +++ R ++ + P I I Sbjct: 668 EALLRWNHPEKGMIRPDQFISVAEETGLIIPIGKWVVREACRMGVTLSELGLGKP-QIAI 726 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ K D +L + A++ + +++L +ES+++ E +R L L+ +G++L Sbjct: 727 NLSPKQFSDPDLLSSIAAILLEEKLPAGQLELELTESLLLDATEETRQQLIGLKALGLTL 786 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 +DDFGT S LSYL P D +K + S + + + I ++I MA+ + ++A+ Sbjct: 787 AMDDFGTGYSSLSYLKKFPIDVIKIDRSFIKDIPDNQDDVEITSAVIAMARKLHLKVVAE 846 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I +K L R CD Q P+ + L+ R+P Sbjct: 847 GIETPEQLKFLRRHRCDIGQGYLFDKPIPGTGLTDALR-RYP 887 >gi|152992153|ref|YP_001357874.1| hypothetical protein SUN_0557 [Sulfurovum sp. NBC37-1] gi|151424014|dbj|BAF71517.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 656 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 132/435 (30%), Positives = 232/435 (53%), Gaps = 6/435 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + K+ + A+ D LT +PNR F DRL +D S + N + V+ +D+D +K+IN Sbjct: 217 KLKQQKDAYKKLAYYDILTKLPNRVLFYDRLKHSIDKSKRN-NTKLAVLFLDLDNFKEIN 275 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG VGD+VL L R+ + L+ D LARL G+ F ++L + I + + ++ + Sbjct: 276 DSLGHHVGDNVLKILATRLQKRLRKSDTLARLGGDEFTLLLEDLEDLSNIGEISQSLIQV 335 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 I+ PI + E + VT S+G + + + +LK A+ AMY AK+ G N ++ Sbjct: 336 ISKPIKIKEHTLYVTVSLGISIYPDDGQDTESLLKCADAAMYSAKNEGCNLFHFYKQEMT 395 Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 I + + A++N E + Y P+I + +++GLEAL++W H + G +S +F+ Sbjct: 396 VKALERITFETSIRHALDNDEFIVYYQPLIDIRTNQLIGLEALLRWQHSEKGLLSPDKFI 455 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAE +I I +LE +A + W ++ P I +N++ K L + L + ++ Sbjct: 456 HIAETSSIIIQIGERVLEDVAAQLEIWHEKGFNPE-RIAVNLSVKQLRHHGLISIISDIL 514 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 KT + P ++L +ES M P ++ LL +++ +G+ LT+DDFGT S LSYL IP Sbjct: 515 EKTKFRPKWLELEITESYTMQKPVQAIRLLNQIKDLGVDLTIDDFGTGYSSLSYLKKIPV 574 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 + +K + + + + A++ +I+ MAK++ ++A+ + E + L +GC IQ Sbjct: 575 NKLKIDRAFIKDITENKDDKALVSAILSMAKSMNLDVVAEGVETEEQRQCLEALGCYKIQ 634 Query: 937 DSHVASPLGFNSILK 951 + P+ + I K Sbjct: 635 GYLFSKPMSVSDIEK 649 >gi|150017708|ref|YP_001309962.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] gi|149904173|gb|ABR35006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Clostridium beijerinckii NCIMB 8052] Length = 792 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 149/770 (19%), Positives = 303/770 (39%), Gaps = 62/770 (8%) Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSK-LVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273 ++ I F A V GY +L LV E R +A ++++F+ + Sbjct: 48 ENINIAFFWRAVSVFGYCFFSGHWLYFALVLNNEKESKYNRIIIILAHVPAVLLFMLNII 107 Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 I + + + I + ++ + + ++ Sbjct: 108 ----VEPSSAMIRRPYGWIDVAPNLIGQIAYSICSIIFYVLGLVMLFNRGRYSKKNRIRK 163 Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 + +L + + + + L + P+ V + + + + + +H Sbjct: 164 QNKIILWTCFISITMGVLTDIILPMFGIL----VFPSAVLSGTIALGGVCYAISKHRFM- 218 Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + + ++ D + I + G + + L Sbjct: 219 ------LTTSKYLSEYIFNSVKNPIFILDENFAIQNCNEASSNITDYKFKELEGKMFSDL 272 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 D ++ + R E ++ D ++ + + + D L + Sbjct: 273 ISYKNID-------FNTIIENSYVR-NVEVNLQQKDERYIVCELSSTVIYDEYDDKLGIV 324 Query: 514 GIANDITEQKK----------------------------SLEGILCNAFQDNLTGIPNRQ 545 + +DI+E+K+ + E I + D LT IPNR+ Sbjct: 325 ILIHDISERKRIAEIEKKYTLKLERKNSKLVDQIKDKILAEEKIRHYVYYDALTEIPNRK 384 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 L+ + +L + + + ++ ID+D +K IND G VGD VL + + + + Sbjct: 385 MMLENINELLK----NKDKKFAILFIDLDDFKNINDNFGHQVGDKVLKKVASTLKDSIGP 440 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 DI++R+ G+ F IIL + + + I + A+ ++K + PI E + + ASIG + + Sbjct: 441 QDIISRIGGDEFIIILKNVESDIYIKEIALRIQKELKKPITYNEESLILGASIGISIFQE 500 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLV 723 S ++ NA+LAMY K GG + ++ D++ +K L A+ N+E + Sbjct: 501 HGEDSDTLINNADLAMYEVKKNGGYDFAIYSPKMEHKAIDKLEMKMKLNKALSNNEFMVY 560 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y PI+ L ++++ EALI+W + IA+ + I I+ +MLE Sbjct: 561 YQPIMDLKSKKVLNSEALIRWKQGDRIIPPIEF-IPIAKSVGEIIPIDNWMLENACIQCK 619 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W + + + +N + L E +Q ++ P + L +E M + E Sbjct: 620 KWNEIGSHE-FSVSVNTSYSQLKQPEFVSLVQNILDAYSLPPEYLNLEVTEDEAMEDFET 678 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901 +L + + +GI ++LDDFGT S L+Y+ +P D +K + SL+ + I++S Sbjct: 679 IINILEQFKSMGIKISLDDFGTGYSSLNYVNKLPIDKIKIDKSLIMNLETNYKNLTIIKS 738 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 II M +++ I+A+ I + ++ L + CD+IQ + P+ + Sbjct: 739 IINMGHSLDIKIVAEGIETKEQLRILNELKCDFIQGYLIGKPMEASDFEH 788 >gi|317405519|gb|EFV85826.1| signaling protein [Achromobacter xylosoxidans C54] Length = 687 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 126/432 (29%), Positives = 216/432 (50%), Gaps = 7/432 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ E ++ A D LT +PNR DRL ++ ++ V+ D+D +K +ND Sbjct: 255 EANEELVQLALHDTLTKLPNRILLEDRLEQAIESASRRKGY-FAVLFFDLDGFKAVNDAY 313 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L+ L +RI + L+ D +ARL G+ F I+L A+ A + ++IA Sbjct: 314 GHHTGDALLIDLAQRIRQTLRTQDTVARLGGDEF-IVLSEVVEPTDAANVADRLIEAIAR 372 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P+ + E+ VT+S+G A + + + +L NA+ AMYHAK GG F S Sbjct: 373 PVMVYGHEVLVTSSVGIAIYPNDGEDTHALLTNADAAMYHAKRLGGTGYSFFEPSMNADA 432 Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I+ DL LA E + L Y P I+G EAL++W+HP G + +F+ A Sbjct: 433 HEQIELLHDLRLAQERDQFVLHYQPKYEAPAGPIMGAEALLRWNHPTRGLVGPDQFIPTA 492 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I +I +++ R + W + I +NI++ L E ++A +++ Sbjct: 493 EKTGLILSIGEWVINEACRQMREWINA-GQGHWTIAVNISALQFAHASLVETVRAALARH 551 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 PS + L +ES M + E S +L RL +G+++++DDFGT S L YL +P + Sbjct: 552 DVPPSCLTLEVTESTAMRDAEASLTVLKRLSGLGVTISIDDFGTGYSSLLYLKRLPATEL 611 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + AI+ +I+ +A+ + I+A+ + K LT +GCD +Q Sbjct: 612 KIDRGFVNQLENDNEDAAIVSAIVALAQQLNLRIVAEGVETAAQQKFLTGLGCDSLQGFL 671 Query: 940 VASPLGFNSILK 951 + P+ + L+ Sbjct: 672 LGKPMPADEFLE 683 >gi|15620536|gb|AAL03920.1|U30252_8 unknown [Synechococcus elongatus PCC 7942] Length = 635 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 130/623 (20%), Positives = 263/623 (42%), Gaps = 58/623 (9%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--L 440 ++ + + + V ++ IL Sbjct: 11 NSSIAVMSFSLNAVISQARNSQTYLRQILDHLPIGVAVHELTGRMTYVNAVGREILRGKY 70 Query: 441 ASGSMHGPIRNW------LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 S ++ + + + + L + + + +R D Sbjct: 71 KSATLEEMAKFFNIYQASKNRLTPIEELPLAMALQGQLSHTE-----DLELRWPDRT-IP 124 Query: 495 MIIRIRPMSNSNGDILRYIGIANDI----------------------------------- 519 + + P+ + G I + + DI Sbjct: 125 LEVWGIPIHDETGHIKEGMTVFQDIHERLENARLIQQANEQLSLTVQELEAANHKLEQEA 184 Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 +E++++ + A D LT +PNR F+++L + D V+ +D D++K + Sbjct: 185 SERQQAQAQLWHLAHFDTLTQLPNRAYFVEQLHAWFNRYKADHQYPFAVLFLDCDRFKIV 244 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG + GD +L + +R+ + P I ARL G+ FG+++ + D A + + Sbjct: 245 NDSLGHSAGDVLLTQVAQRLQSCIASPVIFARLGGDEFGVLVP-AQDPGYPQDLAEQLHE 303 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFR 696 I P + + I + SIG + ++ + E+L++A+ AMY AK G + S + Sbjct: 304 LIVHPFEIQGQRIYIGVSIGISFVSAQIDAAEELLRSADTAMYAAKRNPLSRGIQIFSAK 363 Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +S+ + ++ L A++ +++ L Y PI+ L +VG EAL +W HP+ GNI E Sbjct: 364 LSANSLKNLALETALREAIKQADIDLFYQPIVDLETGALVGAEALARWFHPELGNIPPLE 423 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP--IFILINIASKDLLDNELCEGM 814 F+ +AE +I ++ F+LE+ I W+ + P + +NI+++ + + + + Sbjct: 424 FVTLAERSKLIFSLGNFILEKACLQIHLWQQDHLITPGDFILHVNISAQQICHEDFEDWI 483 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++ +T S + L +ES V + + + LL L+ +G+ L++DDFGT S LSYL Sbjct: 484 KDILQRTEISAQNLMLEITESSVAEDIDQQLLKLLDELKSMGVQLSIDDFGTGYSSLSYL 543 Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P +++K + S + + ++ I +A + ++A+ I E + L ++G Sbjct: 544 QRLPVNSLKIDRSFIHQINLAGDNRQVAQATIALAHSFGLEVVAEGIEEESQLYWLRQLG 603 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 CD Q + + PL + + L+ Sbjct: 604 CDMGQGYYFSKPLSAADMTEFLR 626 >gi|260460286|ref|ZP_05808538.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum WSM2075] gi|259033931|gb|EEW35190.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum WSM2075] Length = 427 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 170/425 (40%), Positives = 284/425 (66%), Gaps = 2/425 (0%) Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 TG+PNR+ F++RL I+ ++ T++ +RPTV VIDID++K++ND LGI+ GD +L+++ RR Sbjct: 2 TGLPNRELFMNRLEAIISIARTEEKVRPTVFVIDIDRFKQVNDGLGISAGDTILLTIARR 61 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + LLK D L+R +G++F ++L+SE + +IA A A++ +I PI +REI +TASI Sbjct: 62 LHRLLKPKDSLSRFAGDQFALMLLSEQDPARIAGVADAIKHAINNPITFAKREIVLTASI 121 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVE 716 G +WTS++ ++ +M+K+AELAM+ AK GG+ +E FR + +DR+ + DL A+E Sbjct: 122 GLITWTSAQTSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFESDLRRAIE 181 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 E L Y PI+RL D + G EAL++WDHP+ G I ++F+ +AE +I + LF ++ Sbjct: 182 RREFTLAYQPIVRLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIVQLGLFAMQ 241 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 + A D+ W+ Q P+ + +N++S+ L+ +L ++++I++ P +L +ES+ Sbjct: 242 QAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRRDLVSDVRSVIARANLKPRCFRLELTESL 301 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896 VM NPE++ +L +L+++GI L+LDDFGT S L+YL PFDT+K + S + ST KR Sbjct: 302 VMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFVDDSTPKRA 361 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +L+S++ MA + +++A+ I E D EL +MGC+Y+Q +P+ + +LK LKE+ Sbjct: 362 VLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMFGAPMPGDQVLKTLKEQ 421 Query: 957 FPLVK 961 +PL + Sbjct: 422 YPLTQ 426 >gi|320324625|gb|EFW80702.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] Length = 586 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + + A DNLTG+PNR DR+ + + +M +D+D +K +ND Sbjct: 137 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 195 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + R+ L D LAR+ G+ F +L+ ++ A I Sbjct: 196 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 254 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++ ++ SIG + + T E+L NA+ AMYH K G N F ++S Sbjct: 255 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 314 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +++ + +DL A+++ + + Y P + +G EAL++W+HP+ G + +F+ +A Sbjct: 315 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 374 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I ++L+ R + W Q I +N+++ L + +++ Sbjct: 375 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 433 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + + L +E+ M + + S +L RL ++G+ L++DDFGT S L YL +P + + Sbjct: 434 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 493 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + AI+ +I+ + + + I+A+ + + + LT +GC +Q Sbjct: 494 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 553 Query: 940 VASPLGFNSILKLLKE 955 + PL L ++ Sbjct: 554 LGYPLPAEQFLDEIRA 569 >gi|229131482|ref|ZP_04260375.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] gi|228651982|gb|EEL07926.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196] Length = 689 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 120/574 (20%), Positives = 243/574 (42%), Gaps = 16/574 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + + A I + + D + D + P I G Sbjct: 124 FIICITRDITAQVKKKVEIEEKQMLFKSLLEYNNDSIISVDSIGRITYANPATYEIFGYR 183 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + +I+ F+ I + + R ++ + + + ++ +R P Sbjct: 184 YEELKDQFI--FQFINKEYEKTFQIIFKNALQGRAKQIVAK-KYIHKEGYELYISVRTIP 240 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + N +I+ + D+T Q + A+ D LTG+ NR S ++L L + Sbjct: 241 II-VNSEIVGVYIVTRDVTRQVLNEMKTEYLAYFDQLTGLMNRISCTNKLNEFLAENKE- 298 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++ ID+D++ IND G GD VL +T + +L L R ++F +++ Sbjct: 299 ----FALVFIDLDEFHLINDTFGHKEGDQVLKKVTECLRDLKIEDMHLFREHDDQFVMLI 354 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + + A + K I+ + E ++ ++ASIG + + + + A+ Sbjct: 355 ENIT-REYVEEVAQTILKKISGHFVIEEEDVYLSASIGIVMAPEDGMDEKMLFQRVDAAL 413 Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739 AK +G + + R R +I+ L A+E +E L Y P I + ++ +E Sbjct: 414 EKAKEKGKGYYHFYCSGLDCEREQRFIIENQLHRAIEKNEFSLYYQPQINIETGKMTSME 473 Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799 ALI+W++ + G +S ++F+ +AE ++ +++ ++ I W ++ + I +N Sbjct: 474 ALIRWENKELGFVSPNQFIPLAERTGFTIKLDEWVVHQVCEQIREWLNKGYEV-VPIAVN 532 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 I+++ L E + ++K P + + +E ++ + + S+ +L +L++ + + Sbjct: 533 ISARHFRSITLIEMITRALNKYNVPPHLLAIEVTEGALI-HKDVSKRVLLQLKEQNLKIH 591 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 LDDFGT S LSYL P DT+K + S M G E+ I +II +A + +IA+ Sbjct: 592 LDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIYKDERDTNITAAIIHLAHTLGLNVIAEG 651 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + I+ L +Q PL + Sbjct: 652 VEKAEQIQFLKEKNVKIVQGYFYNRPLSIYDVEN 685 >gi|167031381|ref|YP_001666612.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166857869|gb|ABY96276.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Pseudomonas putida GB-1] Length = 896 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 148/581 (25%), Positives = 264/581 (45%), Gaps = 43/581 (7%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + AV S + P I ++ + G LP + Sbjct: 335 RRAATNALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLAELPAL 394 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L Q EF+ R + + +W + I + N ++ YIG Sbjct: 395 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I D+T+ K + + I A+ DNLT + NR +F+ L A D ++++DID Sbjct: 450 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGESAMCLLLVDID 506 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L ILAR + N F ++L + + A Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLHAGGILARFASNEFAVLLDN-TSLEDGQGVA 565 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + + +++ P+ + + I VTAS+G A + + ++KNA LA++ AK G + V+ Sbjct: 566 LQLLRTLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQV 625 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P I L ++GLEAL++W+HP+ G I Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELEVFYQPKICLRSGRLLGLEALLRWNHPERGMI 685 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I +++ + R + +A M + + IN++ K D +L Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQACR-MSQQLREAGMGNLHVAINLSPKQFSDPDLVA 744 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859 + ++ E++ E + L L+ +G++L Sbjct: 745 SISTILKD-------------EALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLA 791 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S + + + I +++ MA N++ ++A+ Sbjct: 792 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 851 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I + L R CD Q P+ + + LK R+P Sbjct: 852 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 891 >gi|56475847|ref|YP_157436.1| response regulator receiver protein [Aromatoleum aromaticum EbN1] gi|56311890|emb|CAI06535.1| Response regulator receiver protein [Aromatoleum aromaticum EbN1] Length = 638 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 129/443 (29%), Positives = 236/443 (53%), Gaps = 7/443 (1%) Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 + ++ E++ + + A +D LTG NR+S DRL + ++ N R ++ +D+ Sbjct: 166 ALQTEVAERRGAEKLARELALRDTLTGFFNRRSLNDRLARAISVAG-HQNDRLALLFLDL 224 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D++K++ND LG GD++L + R+ ++ D LAR G+ F ++L + ++ A Sbjct: 225 DRFKRVNDSLGHDKGDELLKQVAARLRCAVREADTLARFGGDEFVVLLENLHDRDDAAQV 284 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 AI + ++A P L + V+AS+G + + ++S ++KNA+LAMY AK G N E Sbjct: 285 AIKICAALAQPFELGASTVKVSASVGVSLYPDDGASASVLMKNADLAMYEAKQMGRNGHE 344 Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 +R R +R+ + +L A+EN E L Y P + +++ I G+EAL++W HP+ G Sbjct: 345 FYREELNRRLLERIRHEHELQQALENDEFELYYQPKVNVVEGTIAGMEALLRWHHPQLGF 404 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNEL 810 +S+ +FM +AEE M+ + + L R W+D + I +N+A L L Sbjct: 405 LSAEQFMGLAEEAGMLVPLGEWALRAACRQARQWQDAGWLEETVRIAVNVAEPQLYSA-L 463 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + + L+ + SP+ I+L +E+++M + + + +L ++ G+S+ +DDFGT S L Sbjct: 464 PDTLARLLDEHGLSPAHIELEITETLLMRDVDHAASVLAQIGATGVSIAVDDFGTGYSSL 523 Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 + L +P +K + S + R AI+ +I+ MA + +IA+ + E + L Sbjct: 524 AILKALPIHILKIDQSFVRDLPHDRDTHAIVTAIVQMAHALGLNVIAEGVENEAQLGALR 583 Query: 929 RMGCDYIQDSHVASPLGFNSILK 951 R+GCD Q + P+ + + K Sbjct: 584 RLGCDEYQGYLYSKPIPASELAK 606 >gi|89094570|ref|ZP_01167508.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92] gi|89081169|gb|EAR60403.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92] Length = 888 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 123/477 (25%), Positives = 232/477 (48%), Gaps = 9/477 (1%) Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 R D + W I ++N + I Y+ + DI+ +K++ + A D LTG+PN Sbjct: 402 RKTDFDGK--WYSFSISHITNPSDQITHYVTVVQDISARKQAEAKLYKQANFDPLTGLPN 459 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R+ + LT L + + V+ +DID +K +ND G VGD +L ++ R+ + Sbjct: 460 RRRAHENLTAELQSAWKHKQ-QVAVLYLDIDNFKNVNDTFGHMVGDQLLQLVSARLVKCC 518 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663 K + +SG+ F ++ + I A + + P+ + ++I V+ SIG + + Sbjct: 519 KDLANICHISGDEF-LVYARYASESDIRKLAQKILDDVQTPVLIEGKQIFVSVSIGISRY 577 Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELY 721 + ++K A++A+Y +K G N F R + I+ +L A+E +E+Y Sbjct: 578 PEDNNDVTGLVKFADIALYESKREGRNRYSFFDHELDRRLKRKHTIETELRQALERNEIY 637 Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781 + Y + +I+G EAL++W+ G + EF+ +AE++ +I + F L + D Sbjct: 638 MAYQSKNDIASGKIIGFEALMRWNSGVLGPVGPFEFIEVAEDIGVINELGEFALRQACID 697 Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841 + ++ + + + +N++ + L D+ + + + I +T PSR++L +ES++ N Sbjct: 698 LQEFQK-FSDTTLKMAVNLSIRQLNDDSIVDMVAKGIEETGIDPSRLELEITESLLAENI 756 Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899 ++ L RL ++G +LT+DDFGT S LSYL P T+K + + + E + Sbjct: 757 DQILPRLERLLELGTALTIDDFGTGYSSLSYLTTFPVSTLKVDRAFVKDMVSNEGDATLT 816 Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 +II MA + ++A+ I E + L CD Q + PL + L++ Sbjct: 817 HTIITMAHALGMKVVAEGIEDEDQLAMLREQNCDIGQGYLFSKPLTQKEMEILIETH 873 >gi|104784060|ref|YP_610558.1| sensory box protein [Pseudomonas entomophila L48] gi|95113047|emb|CAK17775.1| putative sensory box protein [Pseudomonas entomophila L48] Length = 897 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 148/581 (25%), Positives = 262/581 (45%), Gaps = 43/581 (7%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + S AV S + P I ++ + G LP + Sbjct: 336 RRTAASALHLFQRAVEQSASAFLLVNRDGVVEYVNPSFTAITQYSTEEVQGHHLGELPAL 395 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +N +L Q EF+ R + + +W + I + N ++ YIG Sbjct: 396 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 450 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I D+T+ K + + I A+ DNLT + NR +F+ L A D N ++++DID Sbjct: 451 IYEDVTQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSNTPICLLLVDID 507 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +K+IND LG GD +L+SL RR+ L LAR + N F ++L + + A Sbjct: 508 NFKRINDSLGHQTGDKLLISLARRLRNSLSSGGSLARFASNEFAVLL-DDTSLEDGQGVA 566 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + +++ P+ + + I VTAS+G A + ++KNA LA++ AK G + V+ Sbjct: 567 QQLLRTLDKPMFVDNQLINVTASVGLACAPLHGSDPATLMKNAGLALHKAKANGKHQVQV 626 Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 F ++ S ++ ++ +L A+ +EL + Y P + L ++GLEAL++W+HP+ G I Sbjct: 627 FTEVLNAEASYKLFVENNLRRALTQNELEVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 686 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 +F+ +AEE +I I +++ + R A M + + IN++ K D EL Sbjct: 687 RPDQFISVAEETGLIIPIGKWVVRQACRK-SQELRGAGMGNLHVAINLSPKQFSDPELVG 745 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGN-------------PERSRLLLGRLRKIGISLT 859 + +++ + E++ E + L L+ +G++L Sbjct: 746 SIGSILKE-------------EALPPHLLELELTEGLLLEATEDTHRQLDELKALGLTLA 792 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917 +DDFGT S LSYL P D +K + S + + + I +++ MA N++ ++A+ Sbjct: 793 MDDFGTGYSSLSYLKKFPIDIIKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 852 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I + L R CD Q P+ + + L+ R+P Sbjct: 853 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAEKLR-RYP 892 >gi|162149427|ref|YP_001603888.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|161788004|emb|CAP57608.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] Length = 692 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 143/551 (25%), Positives = 259/551 (47%), Gaps = 21/551 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHINDRDNF 464 +A+ + + + A I GL G+ R L ++ R Sbjct: 130 LDIALQNMSHGLCLFGADARLILANGRYAEIFGLPEGAAKPGMTYRALLTLVY-TRRGLS 188 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN----SNGDILRYIGIANDIT 520 + V R R R + ++G ++ DIT Sbjct: 189 AEAVRRRVDGTFERQMALVRRRRGGTSVLHPRPDMAVQVQYRIMADG---GWVATYEDIT 245 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ ++ I A D+LTG+ NR F + L L L+A R V+ ID+DK+K+IN Sbjct: 246 ERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAA-SGTQRVAVIGIDLDKFKEIN 304 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G AVGD VLV+L RI ++L+ +++ARL G+ F ++ ++ F + + Sbjct: 305 DQHGHAVGDQVLVTLAARIRDVLEDDELVARLGGDEFAAA-KRFDDMAELNAFIGRLEEC 363 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 ++ PI + E+ ASIG + + T ++ +A+LAMY AK HV + Sbjct: 364 LSQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDADLAMYRAKGALREHVCFYEAEMD 423 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 DR + L AV++ + +L + R+ EI G E L++W HP+ G ++ +F+ Sbjct: 424 EAARDRRSLVAALWEAVDHHQFHLHFQVQKRVATGEITGFEVLLRWHHPERGWVAPMDFI 483 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE I I ++L + R+ W P I +N+++ L ++ L + ++A++ Sbjct: 484 PLAEECGAILPIGEWVLRQACREAARWSR-----PYRIAVNLSAVQLGEDGLADMVRAIL 538 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 +T +PSR++L +E+ ++ + ++S L R++ +G+S+++DDFG S L L PF Sbjct: 539 EETGLAPSRLELEITETAIIVDKQQSLRTLQRIKALGVSISIDDFGVGYSSLETLRTFPF 598 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S MT + + AILR+I+ + +++ ++A+ + ++ + L GC Q Sbjct: 599 DKIKMDRSFMTEIERSPESKAILRAILALGRSLTIPVLAEGVETQVQLDILHAEGCIEAQ 658 Query: 937 DSHVASPLGFN 947 + P Sbjct: 659 GYLLGRPKPME 669 Score = 62.3 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 4/127 (3%) Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 L V + D V+ D T + G ++ + G + L Y RD Sbjct: 3 FRLLVDEARDYAVYMLDDAGRVTTWNVGAQRLTGYSAREVLGRVGGRL-YSEAERRDGVP 61 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L R G + E D W + I P+ + G + + D T++K Sbjct: 62 QRL--LAEAREGTVAREGWRYRKDGSPFWASVTINPVRDEAGAQVGFAVSVRDDTKRKTD 119 Query: 526 LEGILCN 532 + I Sbjct: 120 ADRIAQM 126 >gi|219670546|ref|YP_002460981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfitobacterium hafniense DCB-2] gi|219540806|gb|ACL22545.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfitobacterium hafniense DCB-2] Length = 596 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 126/565 (22%), Positives = 249/565 (44%), Gaps = 15/565 (2%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + R + V S D+ + +P + ILG G + Sbjct: 27 ALKNLQRRFQVLVQDSHDVFEIINSDGTIQYISPAVEKILGYKPEERIGKPAY--ELLEP 84 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS---NGDILRYIGI 515 ++ F+ +L + +Q E +++ Q + +R + G IL + Sbjct: 85 TEKYKFKQMLTLAFNHPDQVVQEEIKIKTKAGQEIILSCDMRNKLSEPSIQGVILNWRVS 144 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 ++D + + A D LT +P R +F L+ + + ++++DID+ Sbjct: 145 SSD---RNREDSQAKAPATLDELTRLPARGAFESLLSQHMAEAR--GEEALALIIVDIDR 199 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IN LG GD +L ++RR+ L +L R SG+++ I+ Sbjct: 200 FKYINSYLGYEHGDQLLRQISRRLRLLCTDQVLLCRFSGDQYAIVAARGEGQDDYLPLVE 259 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + P + E ++ ++ S+G + + S ++K+A A+ K G H + + Sbjct: 260 EVLRLFDAPFIVDEHKLDISVSLGISLYPHDAQDSETLVKSAYAALLRGKAAGKKHYQFY 319 Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + ++ D+ A++ + + Y PI+ L E++ +EAL++W HP G IS Sbjct: 320 SADVEHKNYREFLLRRDMQKALKEGQFAVHYQPIVNLYTNEVLAVEALLRWKHPLCGMIS 379 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +EF+ I EE I + ++LE + R W+ + PP+ + IN +S + E Sbjct: 380 PAEFIPIMEETGFIVDMGKWLLEEVCRSHKQWQKEGL-PPLKVSINCSSVQFAEECFVES 438 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +QA++ K P + + +ESV++ N ++ L +L++IGI + +DDFGT S LSYL Sbjct: 439 IQAILDKMQLDPRYLIIEITESVLIDNAKKVIADLQKLQEIGILVAVDDFGTGFSSLSYL 498 Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 D +K + S + + + I S+I +A+ + ++A+ I + L R Sbjct: 499 LTFNIDIIKIDSSFIQNIPTNKTSTIITHSVINLARELNIKLVAEGIESPEQLSHLKRFN 558 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 C Q + P+ + + +++ + Sbjct: 559 CHTGQGYLYSKPIPQHQLAEIIANK 583 >gi|325122893|gb|ADY82416.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acinetobacter calcoaceticus PHEA-2] Length = 950 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 127/575 (22%), Positives = 261/575 (45%), Gaps = 11/575 (1%) Query: 388 QHVLATGYFSQGIFSDG---ERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 Q L ++ I + E L + + + ++ D + + P + G + Sbjct: 373 QKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEHLNYIDVNPYYEKLTGFS 432 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + + F T + + G +F + + + ++ + I Sbjct: 433 KPELLSKQLFSITINQKELQQQFHTSITQQLLE-TGEYMGQFDEKFSSGKSVYLWLHINV 491 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + + I YIG A D+TEQK+ + + D+LT +PNR + ++L L + + Sbjct: 492 VKDEFNQITNYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRLYYYNQLHQYLVNPSYN 551 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 ++ ++ID+++ N+ L GD++L +R+ + ++A L+ + F II Sbjct: 552 IK-NLALIRVNIDRFRAFNEFLNNDSGDELLKQFAQRLRLININAILVAYLNSDDFAIIY 610 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 + + + +++ P + E +TASIG A + + +AE A+ Sbjct: 611 EISPIHPNVEQYCQNILQALNAPFYIDNHEYFITASIGVACFPEHGRQIDHLNNHAEQAL 670 Query: 682 YHAKHRGGNHVESFRVS-SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK GGN + + + ++++L A++N E + Y P I L D+ +G EA Sbjct: 671 SEAKRLGGNTICYYCNKTNHSYKTADLEQELRKAIQNDEFVIYYQPKINLHDQSTIGFEA 730 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W HP+ G I + F+ AE +I I +L+++ + + W++ I + +NI Sbjct: 731 LIRWQHPEKGLILPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKNA-GYINIQVSVNI 789 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 ++ + L + ++ K S ++L +ES ++ N + LL +++ IS+ L Sbjct: 790 VAQQIHRGLLLNDLDEVLQKYNIQGSDLELEITESALLDNTANVKTLLHAIKQRDISIAL 849 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DDFGT S L+YL P D +K + + ++ K+ AI+ ++I M K++ ++A+ + Sbjct: 850 DDFGTGYSSLAYLTEYPIDVLKIDRAFISKIGDHKQEAIVNAMIAMGKSMGLKLVAEGVE 909 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + + L + CD++Q + P+ I+ L+ Sbjct: 910 TKEQVTYLQKQQCDFLQGYFFSRPIPAEQIIPYLQ 944 Score = 90.0 bits (222), Expect = 2e-15, Method: Composition-based stats. Identities = 55/378 (14%), Positives = 105/378 (27%), Gaps = 50/378 (13%) Query: 181 YKDTVNSFTLYRGIIIGVASLLAI-------FLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233 + T+ F+ G+ I L + TI + +L I Sbjct: 47 FSSTITIFSWSIGLTIVALVCLLFIPNILTHYRTIDFTKKADRVLQSICLF---SGILIG 103 Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293 I+ + + L + ++S+ II L R+ + Sbjct: 104 INVTIIHFYLPPDLIALPDAHILIALFITSAHIIGLTFLTQQPRYF-------YLLFIPS 156 Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353 + ++ + + ++ T Y + Y++ L+ Sbjct: 157 TVPLLIAQFTHNPITQLPFYFAYNLTFVATVLCAYATQRNYQKISQLLL----------K 206 Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-------ER 406 + + L L V Q Q + E+ Sbjct: 207 NKQLVQISDQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNEQ 266 Query: 407 Q-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIH 457 + A +G WDWDI R+ T + + L IH Sbjct: 267 LESHHYNLAFAHETAGIRPWDWDIESQRLEI-----TFFDQQKQTQTAVIHLNTILDRIH 321 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGI 515 +D+ F L + FR+ D + W+ R ++ LR +G+ Sbjct: 322 PSDKKLFDERLKQHLEGVTDHFNITFRILRRDGSWRWIHDVGRVITRDPKTQKALRMVGM 381 Query: 516 ANDITEQKKSLEGILCNA 533 DI ++KK E + +A Sbjct: 382 TRDIHQEKKDQEHLRLSA 399 >gi|22299542|ref|NP_682789.1| hypothetical protein tlr1999 [Thermosynechococcus elongatus BP-1] gi|22295725|dbj|BAC09551.1| tlr1999 [Thermosynechococcus elongatus BP-1] Length = 790 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 224/447 (50%), Gaps = 8/447 (1%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +I E+K+ +L A D+LT +PNR F D++ L+ +A + V+ +D+D++ Sbjct: 343 REIQERKEVEAQLLYQARHDHLTHLPNRWLFEDQVRLSLNHAAAHSDFHYAVLCLDLDRF 402 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND LG A+GD +L + +R+ + D++ARL + F ++L + A Sbjct: 403 KTLNDSLGHAIGDLLLQAFAKRLTRCVSPQDVVARLGSDEFAVLLNDIQGIEQAQAIAQR 462 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVES 694 +R+ + P + + T SIG + ++ E+L++A++AMY+AK +G + Sbjct: 463 LRERLNHPFEIDHYTLYTTVSIGLVMGDAHYKSTEELLRDADMAMYYAKSKGHNRIDIFD 522 Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + DR+ ++ +L A++ + L Y PII L + G EAL++W IS Sbjct: 523 PMMLQQVRDRLHLEVELRQAIDQGDFALYYQPIINLRSQSPRGFEALVRWQKED-TLISP 581 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM---PPIFILINIASKDLLDNELC 811 + F+ +AEE +I ++ ++L + W+ + + IN+++ L Sbjct: 582 TVFIPVAEETGLIFELSRWVLRSACEQLQQWQKRYPKLRSLGFTVSINLSANQFSLPTLV 641 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ + + +K+ +ES +M + + + +L +L+ +G+ + +DDFGT S LS Sbjct: 642 AEIEQALEHHHLAGQFLKIEITESTLMHHLDSACEILTKLKAMGVRINIDDFGTGYSSLS 701 Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL +P D +K + S ++ ++ + ++R+I+ +A+N+ IA+ I ++ L Sbjct: 702 YLRNLPLDGIKIDRSFISQMDRSQEDLELVRTILVLARNLHLDCIAEGIESTTQLQLLRS 761 Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956 + C + Q A PL + L++ Sbjct: 762 LRCPFGQGYLFAPPLTADKAEVYLQKH 788 >gi|289623524|ref|ZP_06456478.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649807|ref|ZP_06481150.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867719|gb|EGH02428.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 732 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 128/581 (22%), Positives = 231/581 (39%), Gaps = 17/581 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +V+ ++ + + R S D + D ++ I Sbjct: 146 LVLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELI 205 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494 G S G + I R L + D Sbjct: 206 FGHRSEDALGKPLDI--IIPPEMRSRHHAGLSRVASGGPTFIIGKSINLTAIHRDGHTIP 263 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + + G+ I D+T++ ++ + + A D+LTG+ NR + R+ Sbjct: 264 IELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 D L +++ID+D +K +ND LG A GD VL ++R+ E + ++ARL G Sbjct: 322 C-----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGG 376 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F + L + +A+ I PI + I + ASIG + + S +ML Sbjct: 377 DEFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQML 436 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE 556 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 -FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +G+ + DDFGT + LS L P +K + S ++G ++K I+ ++I +A Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFN 675 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + A+ I + CD Q P+ + + Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716 >gi|117925246|ref|YP_865863.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1] gi|117609002|gb|ABK44457.1| ammonium transporter / diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1] Length = 1264 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 137/565 (24%), Positives = 242/565 (42%), Gaps = 18/565 (3%) Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 E LA + + V ++ + G + + G L H Sbjct: 683 RRSEEALRLAATVYESTNESVVIFNGEGRVEQVNQAFCRLSGYTAREVRG-----LELRH 737 Query: 458 INDRDNFRTILDSFVGYR--RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 + ++ D G E + + + + +G I + Sbjct: 738 LLSARYEKSQFDEMAQALALTGHWSGEVMGQRKQGALASERLSLSLVRRPDGSTQNTIAV 797 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 D+TEQK E I A D LT +PNR+ F DRL L + R + +D+D+ Sbjct: 798 FTDLTEQKAQEELIWRQANFDPLTSLPNRRLFQDRLHQALAQADRSAG-RVALFFLDLDR 856 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K IND +G GD++L RI ++ D +ARL G+ F +IL + N ++ A Sbjct: 857 FKPINDTMGHQAGDELLQKCAERINAAVRSSDTVARLGGDEFTVILPNIQNGQDLSRIAE 916 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + K++ P L E ++ S+G A + +++ A+ A+Y AK G N+V+ F Sbjct: 917 GIIKTLTEPFYLKAGEANISTSVGVAVYPDDSQDDEGLMRAADAALYQAKDHGRNNVQFF 976 Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + +R+ +++ L + EL+LVY P + + + G EAL++W P + Sbjct: 977 TESLNQQILERIALEKGLRRGLGAGELFLVYQPQVEVSSGRLSGAEALVRWRLPTGEVVM 1036 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELC 811 F+ +AEE +I + ++ + I +W D PP I IN + K L Sbjct: 1037 PDRFIPMAEESGLIVQVGEVVVSLAVQQIRAWLDAGFEPP-RISINASPKQFHLDGGGLT 1095 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + SPSR+ + ES +M NPERS +L L K+G+ + LDDFGT S L+ Sbjct: 1096 SILMSTCDAYQISPSRLAVEIVESGLMANPERSGEILAGLAKLGVEVELDDFGTGYSSLA 1155 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 L + +K + + G + ++ +++ MA+ + +IA+ + + L Sbjct: 1156 RLSRLQIQALKLDRRFLVGIPEDPQNRILVTAMVQMARGMGIEVIAEGVEDLRQMGFLQD 1215 Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954 +GC Q +A P+ + + + Sbjct: 1216 LGCHRAQGFGIARPMEPEAFVVFCQ 1240 Score = 74.6 bits (182), Expect = 8e-11, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 3/154 (1%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + + A I + R + + D + V P + +L L+ Sbjct: 543 MLIGTFRDIRARKQAELAIKASEARFRTLFASAALGMALIDAKQRVVDANPALMQMLELS 602 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMIIRIR 500 P L H D+ LD+ + R + E R W + I Sbjct: 603 HHRDALPPLAQLA--HPQDQQEVAARLDAVIEGRSPQENCEVRCLCEARHLTIWTRMVIS 660 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 P+ + + I D+T++++S E + A Sbjct: 661 PIVLESNLTPMVVVIVEDVTQRRRSEEALRLAAT 694 Score = 38.8 bits (89), Expect = 5.2, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 18/121 (14%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465 +GD + D ++T P + G +S + + + + + F Sbjct: 454 RAVFQTAGDAILIIDPHSGQITAHNPMAEAVFGRSSAAFAHLTLSDLVVGVTPQ---RFW 510 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 L R D + + I S+ +G++L IG DI +K++ Sbjct: 511 LGLHEEGEG-----------RLPDGHTFPLELAITRASHGDGEML--IGTFRDIRARKQA 557 Query: 526 L 526 Sbjct: 558 E 558 >gi|298487686|ref|ZP_07005727.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157778|gb|EFH98857.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 732 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 127/581 (21%), Positives = 231/581 (39%), Gaps = 17/581 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 +V+ ++ + + R S D + D ++ I Sbjct: 146 LVLKDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELI 205 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494 G S G + I R L + D Sbjct: 206 FGHRSEDALGKPLDI--IIPPEMRSRHHAGLSRVASGGPTFIIGKSINLTAIHRDGHTIP 263 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + + + G+ I D+T++ ++ + + A D+LTG+ NR + R+ Sbjct: 264 IELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 D L +++ID+D +K +ND LG A GD VL ++R+ E + ++ARL G Sbjct: 322 C-----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGG 376 Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674 + F + L + +A+ I PI + I + ASIG + + S +ML Sbjct: 377 DEFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQML 436 Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496 Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792 I G EALI+W+HP G +S + F+ E + + ++L W++ Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWQNTGCDE 556 Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 -FRIGVNLFATQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615 Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910 +G+ + DDFGT + LS L P +K + S ++G ++K I+ ++I +A Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFN 675 Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + A+ I + CD Q P+ + + Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716 >gi|71282285|ref|YP_271060.1| GAF domain/GGDEF domain/EAL domain-containing protein [Colwellia psychrerythraea 34H] gi|71148025|gb|AAZ28498.1| GAF domain/GGDEF domain/EAL domain protein [Colwellia psychrerythraea 34H] Length = 831 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 120/452 (26%), Positives = 234/452 (51%), Gaps = 4/452 (0%) Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 LR + + ++IT +K++ + + A D+LTG+PNR FLD L + + D+ V+ Sbjct: 374 LRTLALEDEITHRKQAEKLLKHTAAHDSLTGLPNRMVFLDLLNHAIACAKRKDDFSFAVL 433 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 +D+D++K +ND LG GD +L + R + +++ D +ARL G+ F I++ ++ + Sbjct: 434 FLDLDRFKVVNDSLGHHAGDVLLKIIARELLAIVRKVDTVARLGGDEFVILIEDLKSNNE 493 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 + A + + P + + + SIG + + ML++A+ AMYHAK G Sbjct: 494 AFEVAQRITAFLQQPFTIDNQLVYTGTSIGISFSNIRYTDADTMLRDADTAMYHAKDNGR 553 Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 E F S + + + ++ D+ A+ E + PII+L ++++ G EAL +W Sbjct: 554 GRYEVFDDSMHQKVQNALSLEADIREAITWQEFIPYFQPIIKLDNQKLKGFEALARWQST 613 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 K G + ++F+ +AEE +IK I++ ++E+ + + W D+ +++ N+ SK Sbjct: 614 KRGFVYPNDFIPLAEETDLIKEIDIQIIEKSCQQLKCWHDELGCDDLYVSCNLFSKQFFS 673 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 L + ++ ++ +T +P +++ +E ++ N E + L+ +G+ + LDDFGT Sbjct: 674 TSLPQDIEKVLKRTGLAPHHLRVELTERALLENAEIVLTNMQALKNMGVKILLDDFGTGY 733 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L YL P D +K + S ++ E AI+R+I+ +A N++ + + + I D + Sbjct: 734 SSLGYLHRFPIDVLKIDRSFISNVDEHNNNRAIIRTIVDLANNLQMSTVGEGIESLADAE 793 Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L +M C Y Q + A P+ + ++ Sbjct: 794 LLQQMDCVYGQGYYFAKPMSSQDTKDYIIQKL 825 >gi|332715584|ref|YP_004443050.1| diguanylate cyclasediguanylate cyclase/phosphodiesterase [Agrobacterium sp. H13-3] gi|325062269|gb|ADY65959.1| diguanylate cyclasediguanylate cyclase/phosphodiesterase [Agrobacterium sp. H13-3] Length = 779 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 152/782 (19%), Positives = 301/782 (38%), Gaps = 53/782 (6%) Query: 191 YRGIIIGVASLLAIFLTIFYM----VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246 +I + + A F + R + A A + + + L+ ++P Sbjct: 18 LLAAVICLLGMHAFFHLLLRAEESPAGRKPYWVLVAAFAAGLSVWATHFVAMLAYKGSVP 77 Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306 G + A S + + L R A + + +++ + Sbjct: 78 IGFDFQFTALSAVLAVLGFWLALRA-----RSQASYSPVIVGTLVTLSVAVMHFVGMAGM 132 Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI--WFIGLWMAITKRLDN 364 + + + + + L AW I I L + Sbjct: 133 DVAATISYRW-GPVLGGFAVAWVFFLLAFFLFLCSAAWKRIVIPAGCSILAICALHFTAM 191 Query: 365 DIIQPALVGGLV-----LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419 + + + +I + V + + +R + + G D Sbjct: 192 SATILSPDPSVAGPDPDNLARVIMIAAVSGVTFLVLAATATAALVDRYLVDLKGLVDATL 251 Query: 420 D---WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH--INDRDNFRTILDSFVG 473 D V A ++G S+ G + + +++ Sbjct: 252 DGLAVVRDGRIVELNTRFAGLVGSDEASLMGKNPDDLFKAMDGQPTYLPRL-APVEAIRE 310 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 +E VR + R P + D+TE++++ I A Sbjct: 311 RTDRPQVFELAVRT-------IEYRGHPCE---------VLAIRDLTEKREAQREIEYLA 354 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LTG+ NR F RL ++ +D ++ +D+D++K +ND+ G A GD VL Sbjct: 355 RHDVLTGLSNRTMFQTRLHQQIEHCDAED--EFALLALDLDRFKAVNDIFGHAEGDRVLK 412 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + + E + DI+ARL G+ F I+ S + A + + +N Sbjct: 413 KVATILDECARPGDIVARLGGDEFVILTARHTKSEEARLLAETILAMFGLKMNAANDPTA 472 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDL 711 V SIG A + ++ +L A+LA+Y AK G + + + +R ++ DL Sbjct: 473 VGVSIGIAVFPRDGNSNESILHAADLALYRAKMGGRGILSFYDPLMDQEARERRQLETDL 532 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 LA+ +EL L Y P++ + ++VG EAL++W HP G + F+ IAEE +I ++ Sbjct: 533 RLAINRNELVLNYQPVLSVECGQVVGYEALVRWQHPTRGVVPPDVFIPIAEESGIIISLG 592 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 ++L R +W P + I +N++ L + ++ ++ SP+R++L Sbjct: 593 EWVLREACRQASTWA-----PHLKIAVNVSPLQFSLANLGHVVCTVLMQSGLSPNRLELE 647 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +E+ ++ + + + ++L +L+ +G+++ +DDFGT S LS L PFD +K + S + Sbjct: 648 ITEAALLKDRKATLIILNQLKALGVAIVMDDFGTGYSSLSNLQSFPFDKIKIDRSFIAAM 707 Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP--LGFN 947 +E AI+R++I + ++++ + A+ I + + + GC Q P Sbjct: 708 SEDDNARAIVRAVIGLGRSLDLPVTAEGIETDAQYRMVVDEGCAQAQGYLFGRPDVAPAA 767 Query: 948 SI 949 + Sbjct: 768 AA 769 >gi|104781933|ref|YP_608431.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48] gi|95110920|emb|CAK15636.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Pseudomonas entomophila L48] Length = 696 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 115/435 (26%), Positives = 212/435 (48%), Gaps = 7/435 (1%) Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + + A D LTG+PNR DR+ + A +M ID+D +K +ND G Sbjct: 255 ANQELTQLALHDTLTGLPNRTLLADRIDQAIGRVAEQGGC-FALMFIDLDGFKPVNDAFG 313 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 VGD +L ++ R+ L D LAR+ G+ F +L+ A+ ++ P Sbjct: 314 HHVGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVELGEPDDAMGVAVKQVNLVSRP 372 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702 + E ++ +TAS+G + + E+L+NA+ AMYHAK G N F +++ Sbjct: 373 FRVAEHDLQLTASLGIVLYPGNGADQHELLRNADAAMYHAKSAGKNGYSFFDASMNTNAR 432 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ + +DL A+E + L Y P + +G EAL++W+HP+ G + F+ +AE Sbjct: 433 QQLQLLQDLRTALEQGQFRLHYQPKFDAAARQPIGAEALLRWEHPQHGLMLPDRFIGLAE 492 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + +I I ++L R + W DQ + I +N+++ L + + ++ Sbjct: 493 KTGLIIPIGEWVLGEACRQMRQWMDQGHD-DWRIAVNLSAIQFCHAGLVDSVARALNDNG 551 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 +R+ L +E+ M + + S +L RL +G+ L++DDFGT S L YL +P + +K Sbjct: 552 LPANRLTLEITETTAMRDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 611 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + AI+ +I+ + + + I+A+ + + LTR+GCD +Q + Sbjct: 612 IDRGFVRDLEQDSDDAAIVSAIVALGQALGLRIVAEGVETDRQQDFLTRLGCDSLQGYLL 671 Query: 941 ASPLGFNSILKLLKE 955 P+ ++ L++ Sbjct: 672 GQPVPPEQFMQRLEQ 686 >gi|75906348|ref|YP_320644.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Anabaena variabilis ATCC 29413] gi|75700073|gb|ABA19749.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Anabaena variabilis ATCC 29413] Length = 611 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 127/442 (28%), Positives = 228/442 (51%), Gaps = 5/442 (1%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ++ ++K +L A D LTG+PNR F+ RL L+ + + N + V+ +D D++K Sbjct: 166 VSARQKLQGKLLDMALHDALTGLPNRILFIRRLGKALNRAKEESNYQFAVLFLDCDRFKV 225 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 +ND LG VGD++L+S+ R+ L LARL G+ FGI+L + A + Sbjct: 226 VNDSLGHLVGDELLISIANRLQSCLTTDSTLARLGGDEFGILLEDIKDIRMAIQIADYIL 285 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + ++M L E+ + SIG +L++A+ AMY AK G F + Sbjct: 286 QQLSMSFKLSRYEVFMNVSIGINWGHQGYDQPEYLLRDADTAMYRAKDSGRARYHVFDPA 345 Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + DL +VE E + Y PII L +I G EAL++W HP G I+ +E Sbjct: 346 MHEEVIKALEKENDLRRSVEKQEFVIYYQPIISLTTGKISGFEALVRWQHPTHGLIAPTE 405 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQ 815 F+ +AEE +I IN+++L+ + + W+ P + I +N+++K L + Sbjct: 406 FIPVAEETGLINIINMWVLQSACQQLRIWQSHPMTPKNLSISVNLSAKLFLQTNFITQVD 465 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +I T PS ++L +E+V+M N +++L +L++ I L +DDFGT S LSYL Sbjct: 466 QIIKDTQIDPSNLELEITETVIMENNNEIKVILQQLKERKIKLIMDDFGTGYSSLSYLHI 525 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PF+ +K + S + ++ + ++ ++I +A ++ + IA+ + + +++L + CD Sbjct: 526 FPFNALKIDKSFVNRMLDNQENMGLVPAMISIAASMGMSAIAEGVETQEQLEQLKSLKCD 585 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 + Q + P+ N ++ + Sbjct: 586 FAQGYLFSRPIAQNMVMDFIAS 607 >gi|254522988|ref|ZP_05135043.1| PAS fold family protein [Stenotrophomonas sp. SKA14] gi|219720579|gb|EED39104.1| PAS fold family protein [Stenotrophomonas sp. SKA14] Length = 919 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 131/548 (23%), Positives = 238/548 (43%), Gaps = 10/548 (1%) Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + ++ + T + I GL + + L + R+ F L Sbjct: 368 EIEVQTRHMQWTEECYRIHGLRKEPI--TLDQALALYTEDSRNAFEAALVRIANGGLPE- 424 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 Q + W+ + + +G R++ + DIT ++++ E I A D LT Sbjct: 425 QLDLCFYRQSGLRVWVQVLVELDR-RDGLPPRFVVLFRDITREREANERIELLAHYDLLT 483 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR ++ ++ + D ++ ID+D +K IND G A GD +L + R+ Sbjct: 484 GLPNRVLLGEQTAEAIEEA-RDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRL 542 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 + L+ D+ R SG+ F ++L A + S+A P+ E + V AS+G Sbjct: 543 HQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVG 602 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN 717 A ++ +L+ A+ AMY AK G N + + + ++ ++ L A+E Sbjct: 603 IAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIER 662 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E L Y P++ E +EAL++W P G S +EF+ IAE+ I I ++L Sbjct: 663 EEFSLAYQPLLHAHQGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNE 722 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R +W I +N+++ L D E + + + P R++L +ES + Sbjct: 723 ACRQATAWDHAGLRFD-RIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESAL 781 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895 + + + R L + G+ L +DDFGT S L+YL P +K + S + G Sbjct: 782 IRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGT 841 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++I+ + + ++A+ + + L R GCD IQ + PL + + L++ Sbjct: 842 AEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQ 901 Query: 956 RFPLVKNT 963 + P T Sbjct: 902 QHPAPGRT 909 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R LA+ +G +WDWDI DRV TP + L +H D R Sbjct: 107 RWELALDSAGHSLWDWDIPSDRVARTPALGD----------ETATEMLSRVHSEDIGQVR 156 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524 LD + + + +FR R AD Q+ W++ R R + ++G LR +G DI +QK+ Sbjct: 157 AALDQHLRGQSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQ 216 Query: 525 SLEGILCNAFQ 535 + Sbjct: 217 LESLLQEQQLH 227 Score = 72.7 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 9/155 (5%) Query: 398 QGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + + S A + W +D +P++ ++L L G++ G R WL + Sbjct: 218 ESLLQEQQLHLSEAQRIASMGSWSFDPTTGHFWWSPELRSLLALEQGAVPGQ-RRWLKQL 276 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H R R R E + + + + ++P+ + G R +G Sbjct: 277 HPRSRGALRAAWRRLWRDGRAA-NLELELTRGNEPSQHLRLWMQPLMDMEGQPKRLLGQV 335 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 +ITEQ ++ I T + NR S L R+ Sbjct: 336 QNITEQHQTDALIRWR------TELLNRVSALGRI 364 >gi|241207102|ref|YP_002978198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860992|gb|ACS58659.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 779 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 141/780 (18%), Positives = 302/780 (38%), Gaps = 46/780 (5%) Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYM----VNRSSMLIPTFAMAWVVLGYISIDFG 237 +D + + + + +A L + R + I A A+ + + Sbjct: 9 RDNHDWRLVLAAAAVCLVGAMAAMLLLSRAQECDAGRRKLWIGASAFAFGTGVWATHFIA 68 Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297 L+ +P G L S + + + +++ + ++ Sbjct: 69 MLAYDGGMPIGYQLGLTTLSFLLSVVGSWAAILVASESRGRFSRIRGGVLMALGIASMHL 128 Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY----------ERAVLLIPAWILI 347 + + + + + ++ + A Sbjct: 129 TGMQAIETQAVILYDPFMTLSAVLAGALLSSAAFHTFFQLKGLRRLLASSITFVLAICA- 187 Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407 + + + L ++ L L+ ++++ T++ + F + +D Sbjct: 188 LHFISMASITLVPDLGKEVPATVLDASLLAAIVVVAATMLILIALAVVFVESHLTDLRGL 247 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 + S + + + + G + G + Sbjct: 248 A---NASQEGLLIL-REGRIIDANERFQGLSGWKLAGLAGKAPS---------------A 288 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 + + V E + + + + + + + + D+TE++++ E Sbjct: 289 VLTAVQGTGQNRSSETLLNTRNGREIAVEVTTSRIVYRGHNCE--VLAVRDLTERRQAEE 346 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 I A D LT +PNR F R+ L ++ N + +D+D++K +ND+ G A Sbjct: 347 MIEHLAHHDVLTDLPNRSLFDTRIRQALQMAER-KNSEVALFYLDLDRFKAVNDIFGHAE 405 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L + + + D +ARL G+ F II ++ A + A ++ Sbjct: 406 GDRILRKVASILRRVADESDTIARLGGDEFAIIQLAGQQPAAAQKLAADILGEFAAEMDT 465 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705 V S+G A + + + + E+ NA+ A+Y KH G V F +R Sbjct: 466 ARDPTAVGVSVGIALYPADGMAAEELCNNADTALYRVKHDGRGKVCFFDAEMDKAARNRR 525 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 I+ +L A+ +++++ Y PI+ + EI G EAL++W+ P G F+ IAEE Sbjct: 526 QIESELRHAIVRNQIHVSYQPILDALSGEIGGYEALMRWNRPGHGLTEPDIFIPIAEESG 585 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 I + ++L++ R+ + W P+ I +N++ + LCE ++A++++T +P Sbjct: 586 SIVQLGEWVLQQACREAVRWP-----LPLMIAVNLSPVQFMLPNLCERIEAILAETGLAP 640 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 SR++L +E+ ++ + +R L RL K+G+ + +DDFGT S LS L PFD +K + Sbjct: 641 SRLELEITEAALIRDRDRVMTTLLRLHKLGVHIVMDDFGTGFSSLSNLRSFPFDKIKVDR 700 Query: 886 SL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + +I+R+II + ++ ++ + + E+ + + GC +Q + P Sbjct: 701 SFTGVLEHDAAARSIVRAIIGLGHSLGMPVVTEGVETEMQRRIVVEEGCTQVQGLLLGKP 760 >gi|227819044|ref|YP_002823015.1| hypothetical protein NGR_b08060 [Sinorhizobium fredii NGR234] gi|227338043|gb|ACP22262.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 1105 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 128/614 (20%), Positives = 249/614 (40%), Gaps = 37/614 (6%) Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL----AVL 412 +R + I P L I +L + I ++ ER + + Sbjct: 478 TGAERYMDVITAPVLGAFGEPIRMLAIWRDITEARKARDDAEAARLHAERLAERLSGVLE 537 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + D V D +L + W +ND F + Sbjct: 538 STMDSVVVADRDWRIEYLNSKAMRLL--QVDEQAVGLDLW-RLFPVNDSSVFAVEYRKVM 594 Query: 473 -GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE---- 527 + + + W+ + P DITE+ K+ + Sbjct: 595 SEHSSTTFEA-----YLEGLERWLEVHAAPTFE------GISLFFRDITERHKAEQERLL 643 Query: 528 ---GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 I A D +TG+PNRQ + + + + V+ +D+D +K +ND G Sbjct: 644 AHRQIHHMARHDAVTGLPNRQFLREAFERLFEGTRARSKT--AVLSLDLDGFKAVNDAYG 701 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD +L S+ R+ ++ D +ARL G+ F I+ + D + + ++ P Sbjct: 702 HPTGDLLLRSVAERLRRCVEGGDTVARLGGDEFVILRTGVRQEEEAIDLSQRIIDALGAP 761 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 L + + +G A + +++K A++A+Y AK RG F + Sbjct: 762 YELDGVQADIGVRVGIAFSPRDGRAADQLIKAADIALYRAKARGRGTYIQFEPGMDAHLQ 821 Query: 705 --VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 +K +L A+ N EL L Y P++ L I EAL++W+HP+ G IS +F+ +AE Sbjct: 822 ARQQMKVELRRALANDELELHYQPLVNLRTGLIATCEALVRWNHPEKGAISPVDFIPLAE 881 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I + ++L R + + W Q + + +N++ L ++ + ++ Sbjct: 882 ETGLIVPLGEWILRRACAEAVQWPQQ-----VSVAVNLSPLQFRSRRLVSVVRDTLKESG 936 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 SR+++ +ESV++ + + +L +R++G+ + +DDFGT S L YL FD +K Sbjct: 937 LDASRLQIEVTESVLLDESDNNLRVLQDIRRLGVKIAMDDFGTGYSSLGYLRTFAFDKIK 996 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + ++ ++ +AI+R++ + + + T + + + + + G D Q Sbjct: 997 VDRGFISDLPTGKESLAIIRAVAGIGRTLGITTAVEGVETQTQLDVIHAEGFDEAQGYLF 1056 Query: 941 ASPLGFNSILKLLK 954 A PL +L+ ++ Sbjct: 1057 ARPLTAARVLEAIQ 1070 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 3/143 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + +++++ + + R + ++W D V + G + Sbjct: 250 YGLVENIDDRRKALEALKESEARFRAIADDAPVMIWVADENGASVYQSRVWLETTGQIAE 309 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G WL IH +DR + + + R ++ E+R+R D + W+I +P Sbjct: 310 QAQG--FGWLDAIHPDDRIDAEAAFNEALRLRT-PVRTEYRLRRVDGSYAWVIDVGQPRF 366 Query: 504 NSNGDILRYIGIANDITEQKKSL 526 ++G L Y+G+ DITE++++ Sbjct: 367 ATDGGFLGYVGVGLDITERRQAE 389 Score = 87.3 bits (215), Expect = 1e-14, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 3/146 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + I V A + + E V + W D D + P I G Sbjct: 122 LVVATILDVTARRRAESELRASEEHYRSLVELHPQVPWTADPSGDVLEVGPRWKEITGFE 181 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G W + +D + V L EFR+ +HW R Sbjct: 182 PADAFGT--GWAKAMQPDDLETVERQWSKSVATGN-PLDVEFRLADGQGGYHWFRSRAAA 238 Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527 +G + R+ G+ +I +++K+LE Sbjct: 239 RRAEDGTVTRWYGLVENIDDRRKALE 264 Score = 68.1 bits (165), Expect = 7e-09, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 3/144 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + D + D+ + + GL + +R Sbjct: 384 ERRQAELALVESEALIRSVFESTPDCIRLLDLDGRPLLMNRAGRQLFGLGESTRLEDVR- 442 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 W + +D + R R+ E +R +M + P+ + G+ +R Sbjct: 443 WEKMVPASDVAKAEAVYSEVRQGRTTRV--ETAIRDNTGAERYMDVITAPVLGAFGEPIR 500 Query: 512 YIGIANDITEQKKSLEGILCNAFQ 535 + I DITE +K+ + Sbjct: 501 MLAIWRDITEARKARDDAEAARLH 524 Score = 43.8 bits (102), Expect = 0.16, Method: Composition-based stats. Identities = 12/131 (9%), Positives = 38/131 (29%), Gaps = 5/131 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D ++G + G + ++ D R Sbjct: 19 LEAILDAIPQPIIVKDEQSQFRFLNDAACALIGRGRDDLIGLTD--FDVLPASEADRIRE 76 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG--DILRYIGIANDITEQKK 524 + + +E + +AD ++ + R ++G + D+T +++ Sbjct: 77 MDRRVLST-GEEFLFEQEITSADGSVRNLLTQKRRAELTSGHSKQQLVVATILDVTARRR 135 Query: 525 SLEGILCNAFQ 535 + + + Sbjct: 136 AESELRASEEH 146 >gi|292492708|ref|YP_003528147.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291581303|gb|ADE15760.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 573 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 123/444 (27%), Positives = 229/444 (51%), Gaps = 9/444 (2%) Query: 520 TEQKKSLE---GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 T+ KK+ A D LTG+PNR DRL + + + ++ +D+D++ Sbjct: 131 TQLKKTQAKETRSRHLAQYDALTGLPNRILLQDRLAQSMAET-LHSRQQLALLFLDLDRF 189 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND G +GD L+ + + + D + R+ G+ F II ++ + A A Sbjct: 190 KDINDSFGHEIGDAELIRVAGVLHGCVGPTDTVLRIGGDEFAIIQTHILDADEAALLAQR 249 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + +IA P L +I SIG + S T+ ++LKNA++A+YHAKH G N+ + + Sbjct: 250 ILGAIAEPHRLQGHKIHNNVSIGITLFPSDAPTAKQLLKNADIALYHAKHEGRNNYQLYM 309 Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 RV + +DL A+E+ +L+L + P + L V EAL++W HP+ G ++ Sbjct: 310 PDINARAHSRVALAKDLQSALESGDLHLQFQPQLDLTSGRTVSFEALLRWRHPQHGMLAR 369 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ +AEE +I I ++LE + SW+ Q + P+ + +N++ + +L G+ Sbjct: 370 QTFIRLAEETGLIIPIGAWVLEIACQTCFSWQ-QFHSGPLQVAVNLSPRQFRQPDLAGGI 428 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 A++ +T SP +++ +E +++ + + + L L +G+ +++DDFGT S L+YL Sbjct: 429 AAILERTGLSPPSLEVEITEGLLIEDMDSALKTLQSLSTLGVRISVDDFGTGHSSLTYLK 488 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 ++P D++K + S + E + AI ++II + ++ ++A+ + + L GC Sbjct: 489 HLPLDSIKIDRSFIHDIPEEIESRAITKAIIALGHSLNLEVVAEGVETQEQFLYLQEYGC 548 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 D +Q ++ PL K +E+ Sbjct: 549 DRVQGYFISKPLNAPRAQKWWQEK 572 >gi|239820749|ref|YP_002947934.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Variovorax paradoxus S110] gi|239805602|gb|ACS22668.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Variovorax paradoxus S110] Length = 755 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 133/534 (24%), Positives = 247/534 (46%), Gaps = 9/534 (1%) Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 + + +I G ++ I D+ + + E+R+ Sbjct: 207 IYISHNITK-FGHEPAALLANPDWADVLIDPADQPGVAAAMARVLEKDAEGASIEYRLCT 265 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 D W+ R P+ + +G ++ GI D+TE+K + E + A D LTG+ NR + Sbjct: 266 GDGARRWVENRYVPVRDKDGRLIEVEGIVIDVTERKAAEEQLAKLARTDGLTGLANRATL 325 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 ++RL +A ++ + +D+D +K +ND+ G GD +L + R+ + D Sbjct: 326 VERLHQA-HAAARRGSVPFALHCLDLDHFKPVNDMFGHPGGDLLLREVALRLKNCTRETD 384 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 ++ARL G+ F ++ ++ A +++ +A P + ++ +ASIG +T Sbjct: 385 VVARLGGDEFAVLQSEMADAAAAGALAAKIQQELARPYMIDGNQVHASASIGICPYTPGS 444 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYH 725 + EML A+LA+Y +K +G N DRV + EDL A+E +L L Y Sbjct: 445 ESPEEMLAQADLALYRSKEQGRNQYHFHSEELDFEVRDRVALGEDLKQAIEREQLELYYQ 504 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + L +IVG+EAL++W+HP+ G + ++ F+ IAE I A+ ++L++ R + W Sbjct: 505 PQVELSSGKIVGVEALLRWNHPRRGLLEANAFVPIAERTGGIVALGRWVLDQACRQMSLW 564 Query: 786 RDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 R+Q PP+ + IN++ L +EL + ++K PS ++ +ES + Sbjct: 565 REQGVAPPV-VAINLSLGQLRQGSELIRDVTEGLAKWRLEPSVLEFDVTESTLAQMTWTH 623 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902 +L RLR +G+ + +DDFGT+ S YL + +K S++ A +R+I Sbjct: 624 NDVLPRLRALGVRIAIDDFGTEYSSFEYLRTYRVNHLKIAQSMLKRAIDDPDSAATVRAI 683 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGC-DYIQDSHVASPLGFNSILKLLKE 955 + +A+ II + + + + L G Q + + + L+ Sbjct: 684 MNLAREARIGIIVEGLETQTQLAFLQSTGATTLAQGYYFSEAVMATEAGDFLRS 737 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] gi|133738375|emb|CAL61420.1| conserved hypothetical protein; putative GGDEF, MHYT and EAL domains; putative membrane protein [Herminiimonas arsenicoxydans] Length = 715 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 122/433 (28%), Positives = 218/433 (50%), Gaps = 7/433 (1%) Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + + A QDNLT +PNR DRL IL + + R +M ID+D +K IND LG Sbjct: 259 ANQELTRQALQDNLTKLPNRTLLEDRLNQILHKAERT-HTRFALMFIDLDGFKAINDSLG 317 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 +GD +L+ + +RI ++ D ARL G+ F +++ A A + I P Sbjct: 318 HHIGDMLLIEVAQRIRGSIRAQDTAARLGGDEFVLLIE-VTEPEDAASVADKLCNIINQP 376 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702 + + V+AS+G + T ++L NA+ AMYH K G N F +++ Sbjct: 377 FEIDFHTLGVSASVGITIYPDDGHTPHDLLVNADAAMYHTKSTGRNGYHFFEASMNANAH 436 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 +++ + +DL LA+E E L Y P + +VG EAL++W HP G I+ +F+ +AE Sbjct: 437 NQLQVIQDLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIALAE 496 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + +I I ++L+ R + W D+ + +N+++ ++ L E +Q +++ Sbjct: 497 KTGLIVPIGEWVLDEACRQMRIWHDE-GNQHWKVAVNLSAVQFSNDHLIELVQTTLARNN 555 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + S + L +ES M + E S +L +L +GI +++DDFGT S L YL +P +K Sbjct: 556 FPASGLILEVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATELK 615 Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + +I+ +II + +++ I+A+ + E L +GCD +Q + Sbjct: 616 IDRGFIRDLAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGYLM 675 Query: 941 ASPLGFNSILKLL 953 P+ + + + Sbjct: 676 GRPMAPDQFMDAI 688 >gi|332141558|ref|YP_004427296.1| GGDEF domain-containing PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551580|gb|AEA98298.1| GGDEF domain-containing PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 794 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 134/502 (26%), Positives = 227/502 (45%), Gaps = 17/502 (3%) Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 R + + F + + P I ++ IA+ Sbjct: 304 RAGVAACWSQPIRGASTEVIGTFAIYHR--------YKAVPTPEEVVLIEQFAHIASIAI 355 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E++++ E I A D LTG+PNR LD L L + + + R V +D+D +K IN Sbjct: 356 ERERASELIWKQANFDTLTGLPNRNLMLDHLQLALKTADREGD-RVAVAFLDLDNFKDIN 414 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG VGD +L+ RI + L+ D ++RL G+ F +IL S I + Sbjct: 415 DTLGHDVGDQLLIECAERIKQCLRANDTVSRLGGDEFVVILNSIETLSSIDIVVQKILDV 474 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 I P + + +AS+G + +LKNA+ AMY AK G N + + Sbjct: 475 ILKPYLINVERVHTSASLGVTLYPDDARDIKGLLKNADQAMYGAKDLGKNSYKYYTQDMQ 534 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ + DL A++N EL++ Y PI D + + EAL++W HP+ G I+ EF+ Sbjct: 535 AVAVKRITLLNDLRYAIQNDELFIEYQPITSFKDGKAIKAEALLRWQHPEKGRIAPDEFI 594 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEGMQA 816 +AEE +I I+ ++ E + +++ W+ + I IN + E + + + Sbjct: 595 PLAEESGLIIEISNWVFEEVCKNVKRWQTHYCRE-LQICINTSPSQYFQQETSITDWLTR 653 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L+ + + I L +E+++M L + R+ G+ + LDDFGT S +SYL + Sbjct: 654 LLDE-NIAARSILLEVTENLLMEADTNVSKKLFQFRQAGVDIALDDFGTGYSSISYLKKL 712 Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P D +K + S + T+ + +II MAK + ++A+ + + L MGCD+ Sbjct: 713 PTDYLKIDKSFVKTMTDVSNDKVLCEAIIVMAKKLGIKVVAEGVETQEQYDILNNMGCDF 772 Query: 935 IQDSHVASPLGFNSILKLLKER 956 Q +A P+ + LK Sbjct: 773 GQGYFIARPMSKTNFEAFLKAH 794 >gi|187927489|ref|YP_001897976.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J] gi|309779809|ref|ZP_07674564.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA] gi|187724379|gb|ACD25544.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J] gi|308921386|gb|EFP67028.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA] Length = 685 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 118/432 (27%), Positives = 215/432 (49%), Gaps = 7/432 (1%) Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + A DNLT + NR DRLT + + + + R +M +D+D +K +NDV G Sbjct: 257 KELAYLALHDNLTKLSNRVLLEDRLTQAIRTAEREKH-RFALMFMDLDGFKAVNDVYGHH 315 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +RIG ++ D +AR+ G+ F +L ++ A A+ + + P Sbjct: 316 VGDLLLIDVAQRIGARVRQQDTVARVGGDEFV-VLAYVDDPEDAGTLANALLEVVREPFM 374 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDR 704 E+ V+ SIG A + ++L NA+ AMYHAK G N F S + Sbjct: 375 AGGHELRVSTSIGIAIYPGDGGNQHDLLTNADAAMYHAKGLGRNAYSFFEPSMNADVHQQ 434 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + + +DL AVE EL L Y P + I+G+EAL++W HP+ G + + EF+ +AE+ Sbjct: 435 LQLVQDLRRAVERHELVLHYQPKFNAPNGPIMGVEALVRWQHPQRGLVPADEFIPLAEKT 494 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + ++L+ R + W+ + + +N+++ L + ++ +++ Sbjct: 495 GLIVPLGAWVLDEACRQMAQWQRE-GHSGWSVAVNLSALQFGHAALIDSVRDTLARHALD 553 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + L +ES M + + S +L RL +G+ +++DDFGT S L YL +P +K + Sbjct: 554 PRSLTLEITESTAMRDVDASLQILQRLDAMGVRISIDDFGTGYSSLLYLKRLPASELKID 613 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + + AI+ +I+ + + + I+A+ + LTR+GC +Q + Sbjct: 614 RGFVRDLAHDTEDAAIVSAIVALGQTLNLRIVAEGVETAEQQAFLTRLGCHSLQGYLLGR 673 Query: 943 PLGFNSILKLLK 954 P+ S+ + Sbjct: 674 PMTAESLSAAMA 685 >gi|77918430|ref|YP_356245.1| EAL and GGDEF domain-containing protein [Pelobacter carbinolicus DSM 2380] gi|77544513|gb|ABA88075.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM 2380] Length = 976 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 127/439 (28%), Positives = 218/439 (49%), Gaps = 6/439 (1%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 I+EQ K+ + I A D LTG+ NR +R + + + + + ++D+D + Sbjct: 516 RFISEQNKAQKKIAYLAHYDQLTGLANRSLLKERFDYAVRHAMRSGS-QVALCLLDLDGF 574 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K IND+ G VGD +L + +R+ ++ D+ AR+ G+ F I+ + Sbjct: 575 KAINDLQGHHVGDQLLCEVAKRLQTSIRSTDMAARIGGDEFVILFTDMQKTSVATTLVQK 634 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 +L E T+TAS+G A + + K+A+ AMY AK G N V+ FR Sbjct: 635 AMSCFTSAYDLQEHTHTITASMGVAIFPEDGHDFPTLFKHADAAMYFAKESGRNGVQFFR 694 Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 +R+ ++ +L A++ +L L Y PI +L ++ IVGLEAL++W HP+ G + Sbjct: 695 QEIGQRVQNRLTMETELRQALQEDQLELHYQPIWQLTEKCIVGLEALVRWRHPQKGLLPP 754 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 F+ IAEE +I+A+ ++L RD+ SWR+Q + + +NI+++ L ++ + Sbjct: 755 DRFIPIAEESNLIQALGQWVLNAACRDMRSWRNQ-GFESLPVSVNISARQLFHDDFTSSL 813 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 L+ + P +++L +E++ + ++ L+ IG+ L LDDFGT S LSYL Sbjct: 814 ARLLKEYALPPEQLELEVTETIFLQKDTTVEKVMNHLKNIGVGLVLDDFGTGYSSLSYLN 873 Query: 875 YIPFDTVKFNGSLMTGSTEKRI-AILRS-IIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 D +K + S M +K AIL + II MA+++ ++A+ + L GC Sbjct: 874 RFHIDKLKIDRSFMAHICQKEQDAILTATIIRMAQSLGMQVVAEGVETAGQELFLMEQGC 933 Query: 933 DYIQDSHVASPLGFNSILK 951 D Q P S+ Sbjct: 934 DLAQGYFYYKPQPIESLRD 952 Score = 53.8 bits (128), Expect = 2e-04, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 7/158 (4%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLAS 442 T+ + + + + + + D+V+ D + P + + Sbjct: 185 ATMFSDITESHNAKEALQENQSLIQSLLRSMQDLVFVLDTDLVFQTYHQPACGKLF-VLP 243 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 G + + + E+ + D + + I P Sbjct: 244 EQFIGKHLDEVNL--PEEVVQATKTALEHTLTTGTVTHTEYWLDLPDGRT-CFDMCISPY 300 Query: 503 SNSNGDILRYIGIANDITEQKKSLE--GILCNAFQDNL 538 N I +A DITE+K++ E A L Sbjct: 301 RAQNRQIKGLTCVARDITERKQAEETLEKRIQALTRPL 338 >gi|91978607|ref|YP_571266.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91685063|gb|ABE41365.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 777 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 134/690 (19%), Positives = 277/690 (40%), Gaps = 28/690 (4%) Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 RW + A + ++ + ++ + Sbjct: 88 DAQRWEMRYQIGAMLYAAALGFWCVIALIGTDDPVAHM-----ICTCVTLSYMAAGAGRT 142 Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 Y R + IL+ + +A + AL+ + + + T +Q + Sbjct: 143 YGRPWIFHL-QILLACGSMSAALAWHGNIYYA--GLALLNVVFFVGVKHITTSLQQIFVR 199 Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + S + A+ + + ++ L S+ Sbjct: 200 ALLGRERESALAAQFDTALNNMPHGLCMFGPDGRLAVMNHRFTEMMKL-RDSLVKNAPTA 258 Query: 453 LPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + + + + L E ++ + +PM+ Sbjct: 259 TEIVAACVSIGAISASSGRLILSEVDNSLAGEIVTVGDESTPRSLSWTFQPMAGG----- 313 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP-TVM 569 + + DITE++ + I+ A D LTG+PNR +F D + IL S + ++ Sbjct: 314 GTVVLVEDITERRNAEARIIHLARYDELTGLPNRVNFHDEIERILTASQGQNKAALSALL 373 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ID+D++K++ND LG GD +L ++ R+ ++L+ D +AR G+ F + + ++ Sbjct: 374 FIDLDQFKQVNDTLGHPCGDRLLCAVADRLRDMLRPEDFVARFGGDEFVVFQQNIRSNED 433 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689 A A + ++ + + + ASIG A T+ + +LKNA++A+Y AK G Sbjct: 434 AAVLARRIVDRLSDRYLIDHHVVEIGASIGIAL-TAPATRADILLKNADMALYRAKADGR 492 Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747 FR ++ ++ DL A+ N E L + P++ L I EAL++W+HP Sbjct: 493 GTYCFFREEMAKTVEARRILELDLRKALANEEFELYFQPLVNLKTGRIATCEALLRWNHP 552 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 G +S + + +AEE+ +I + ++L + + + W +Q + + +N +S+ Sbjct: 553 VRGTVSPVDIIPVAEEMGLIVDLGRWILRKACMECMMWPEQ-----VSVAVNFSSQQFHQ 607 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 ++ ++ + + SR+++ +ES ++ N + + L +L G+ ++LDDFGT Sbjct: 608 RDVINEVRYALEVSGLPASRLEIEITESSLLRNTQFTHDALEQLHAEGVRISLDDFGTGY 667 Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 S LSYL P VK + S + G R +L + ++ ++ ++ + I ++ Sbjct: 668 SSLSYLHSFPLQKVKIDRSFLEGIDSDRPLTLLHGVARLSADLGMAVVVEGIETNEQLER 727 Query: 927 LTRMG-CDYIQDSHVASPLGFNSILKLLKE 955 + G Q + P+ + I +LL Sbjct: 728 INSEGTVTEGQGYLFSRPVPASRIRQLLAA 757 >gi|315499329|ref|YP_004088133.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) [Asticcacaulis excentricus CB 48] gi|315417341|gb|ADU13982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Asticcacaulis excentricus CB 48] Length = 622 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 122/567 (21%), Positives = 248/567 (43%), Gaps = 27/567 (4%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + +G+R + + +D T + + + + Sbjct: 60 LRQSLRDLRENGQRFQATIETLPHGICLYDRDGHICEYNRAYLTFFDVDKAN-NARGLSL 118 Query: 453 LPYIHINDR------DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506 + + R +L+ + G ++ ++ W R +S + Sbjct: 119 VQALEAAGRRMSASNARLMQLLEYLAIPKTG---------HSEGEYVWPSGRTVRVSRTG 169 Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + Y+ + DITE + I A D LT + NR F RL ++ ++ Sbjct: 170 VEGGGYLDVIADITESHLARATIERMANFDALTELANRNLFQKRLADLVARASARSMAA- 228 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626 ++ +D+D++K +ND+ G VGD +L + RR+ ++L+ D+ ARL G+ F ++L + Sbjct: 229 -ILSLDLDRFKAVNDLYGHGVGDALLAKVARRLVDVLRPGDLAARLGGDEFAVLLEKVSA 287 Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A + ++ P + EI + AS+G +++++A+ A+Y AK Sbjct: 288 HHDAHQVAKRLVSHLSAPYEIDGLEIVIGASVGIEFIDDPHAAPIDLMRHADQALYAAKR 347 Query: 687 RGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 G N + + + R I+ DL A ++ E +LVY PI + + G EAL++W Sbjct: 348 SGRNDIAVYDAKLHETYLERQQIEADLRKAAQSREFFLVYQPIFCVKSARVCGYEALLRW 407 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 P G +S +EF+ +AEE +I+ I +++ + +D + + I +N++ Sbjct: 408 QSPVRGIVSPNEFIPVAEETGIIEEIGSWVIRKACKDAAALPEHT-----TIAVNVSPVQ 462 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 + + + +P+R+++ +E V++G+ + +L L+ +G+ ++LDDFG Sbjct: 463 FRSRAFVSVVTRALQDSRINPNRLEIEITEGVMIGDAGEALKILRALKALGVRISLDDFG 522 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEI 922 T S SY+ PFD +K + S + ++ AI+R++ M ++ A+ + E Sbjct: 523 TGYSSFSYISAFPFDKIKIDQSFVRDLGQRSESLAIIRAVSGMCSSLGIVSTAEGVETEQ 582 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949 + L CD +Q P+ N + Sbjct: 583 QFEILRTEHCDTMQGYLFGKPVALNEL 609 >gi|322507765|gb|ADX03219.1| Sensory box protein [Acinetobacter baumannii 1656-2] Length = 949 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 266/577 (46%), Gaps = 15/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V T Q D E L + + + ++ D + + P + G + Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499 + + ++ + + + G +F + + ++ + I Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I+ YIG A D+T+QK+ + + D+LT +PNR + ++L L + Sbjct: 490 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ I+ID+++ N+ L GD++L +R+ ++A L+G+ F I Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I I + + +++ P + E+E +TASIG A + + +AE Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 A+ AK GGN + + + ++ ++++L A++N E + Y P I L D+ I G Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKIADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + + F+ AE +I I +L+++ + + W+ + + + Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI ++ + L + ++ S ++L +ES ++ N + + LL +++ IS+ Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917 LDDFGT S L+YL P D +K + + ++ +++ AI+ ++I M K++ ++A+ Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E + L + CD++Q + PL N IL+ L+ Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944 Score = 91.2 bits (225), Expect = 8e-16, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 40/327 (12%) Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284 + I+ L + + + ++S+ II L R+ Sbjct: 95 CLTSGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYF----- 149 Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 + + + + + ++ T Y + Y++ L+ Sbjct: 150 --YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL--- 204 Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + L L V Q Q + Sbjct: 205 -------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERT 257 Query: 405 -------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI- 449 ER + A +G WDWDI + ++ T + + P+ Sbjct: 258 YDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTPLH 312 Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--N 506 ++ L IH NDR F L + + FR+ + + W+ R +S Sbjct: 313 LKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKT 372 Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533 LR +G+ DI ++KK E + +A Sbjct: 373 NKALRMVGMTRDIHQEKKDQEHLRLSA 399 >gi|118443995|ref|YP_877082.1| nitrogen fixation positive activator [Clostridium novyi NT] gi|118134451|gb|ABK61495.1| nitrogen fixation positive activator, putative [Clostridium novyi NT] Length = 591 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 132/560 (23%), Positives = 255/560 (45%), Gaps = 11/560 (1%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 S + S + + D + + I + + I + ++ Sbjct: 39 FSEIIDSSKEGIMILDESLTVLYANYTLLKICERNVEEVINERIYNINKIK---VEFYKN 95 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I+ + + + E+R + + + + I + + + YI I D+T+ K+S Sbjct: 96 IVMNIKQNKIWTGELEYR--SKSGRMYSLSILGKSIISQRDLQTYYIVIFEDVTKLKESE 153 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 I D LT +P ++ F+ L + L V+ + +D +K IN+ +G Sbjct: 154 RDINYLKKYDILTQLPQKELFVKNLKDEIIRLEGTGKL-VGVVTLGLDDFKFINEAMGHL 212 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD +L +TRR+ L LAR++G+ FGIIL + I + +++ Sbjct: 213 SGDRLLRDVTRRLKT-LDKKCFLARITGDEFGIILTECEDIKDIENRINHIQQLFCKAFV 271 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706 + ++E+ VTASIG + + + ++E++ NA A K G N + + ++ Sbjct: 272 INDQEVFVTASIGISIYPLDALNANELIMNATSAQNFVKKNGKNDYKIYSKDISKNAYKR 331 Query: 707 IK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 I+ L AVEN++ L Y P + L ++G+EALI+W+HPK G + +F+ +AE+ Sbjct: 332 IEMIALLKHAVENNQFVLHYQPQVSLESGSVMGVEALIRWNHPKLGLVYPDKFIPLAEKT 391 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + +++ R W D + + +N+++ +L + + + + Sbjct: 392 GLIIPMGEWVIREACRQNKIWHDSGFEE-LVVSVNLSALQFEKEDLVDVIVDALKTSGLD 450 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P +++ +E ++M N +++ L L++IG+ + +DDFGT S LSYL P D +K + Sbjct: 451 PKFLEVEITEGILMVNTDKAIQTLNDLKEIGVKIAIDDFGTGYSSLSYLKEFPIDRLKID 510 Query: 885 GSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + G E AI II +AK++ ++A+ IK L CD IQ + + P Sbjct: 511 RSFIMGIPKEDNGAIANIIIELAKSLHLNVVAEGTETLDHIKFLKVRKCDTIQGYYFSKP 570 Query: 944 LGFNSILKLLKERFPLVKNT 963 + ++L++ L N+ Sbjct: 571 VSGEGFTEILRDNKKLYSNS 590 >gi|88811130|ref|ZP_01126386.1| putative signal transducer protein with histidine kinase domain [Nitrococcus mobilis Nb-231] gi|88791669|gb|EAR22780.1| putative signal transducer protein with histidine kinase domain [Nitrococcus mobilis Nb-231] Length = 654 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 156/651 (23%), Positives = 281/651 (43%), Gaps = 14/651 (2%) Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 +R+ A V ++ HG+ A + + F+ + +A Q A Sbjct: 5 SRLISAIAVAITAGVLVSHGVWELSVASKPTSSIGALLELFVAVVLAAWSWYQLRHTQHA 64 Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430 L V + + + + + + ++ + D V+ D + Sbjct: 65 LPTTRVSL-LTLPAPRLGFAWINVKAHTQLDENPCYHAMILDSMADAVFIIDHGFRILDC 123 Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 +LG + + G N + D +D+ V + GR Q E + Sbjct: 124 NRAAEALLGRDNAELKGIALN--QLLRAQQVDTLLKAIDTTVTH-TGRWQGELCFGNSQG 180 Query: 491 QFHWMIIRIRPMSNSNGDILR-YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549 P+ +S+ +G+ DI E+K + + A D LT +PNR F D Sbjct: 181 --ILTEAIFVPLMDSSTKRQGTLLGVVRDIRERKAAETHLGYAANYDPLTALPNRSLFRD 238 Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609 RL +L ++ + + +ID+D +K IN+ LG A GD VL + +R+G + D L Sbjct: 239 RLDQVLADASWQRR-QIALHLIDLDNFKLINEGLGHAQGDQVLQRIAQRLGAAVHRSDTL 297 Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKI 668 AR+ G++F +I S + + A A + + + + RE+ VTASIG A + + + Sbjct: 298 ARVGGDKFALIQTSLHRVEQSAFRAQHLLDVVEPTLTIAGERELNVTASIGIALYPENGL 357 Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726 + E+ NAELA+ AK G N F RV ++ DL A+ + E Y P Sbjct: 358 ATEELTHNAELALSRAKLEGRNAYCFFVRGMEEEMRVRCALEHDLGQALTHDEFLFHYQP 417 Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786 + L ++G EALI+W HPK+G + S F+ +AEE I + + L + R + W+ Sbjct: 418 QVELTTGRVIGCEALIRWHHPKYGLLYPSRFISMAEESGAIIPLGEWSLREVCRQLKVWQ 477 Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846 + I +N+++ E + ++ P+ ++L +ES+ M NPE + Sbjct: 478 REGLPIG-HIAVNLSAVQFRYPEFASLVDQVLRDASVDPACLELEVTESLAMENPELAAS 536 Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIP 904 L+ +L+++G+ L +DDFG S L YL P +K + SL+ AI ++I Sbjct: 537 LVAQLKRLGVKLAIDDFGAGYSSLGYLKRFPVQMLKIDRSLIDELATNGCDAAITIAVIE 596 Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +++ ++A+ I + L R CD+ Q + A+ + ++ Sbjct: 597 LGHSLDMHVLAEGIETREQLDFLRRHHCDFGQGTSFAAAMPAGEFAACVRR 647 >gi|124267633|ref|YP_001021637.1| signal transduction protein [Methylibium petroleiphilum PM1] gi|124260408|gb|ABM95402.1| signal transduction protein [Methylibium petroleiphilum PM1] Length = 965 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 146/551 (26%), Positives = 260/551 (47%), Gaps = 22/551 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + AV + D ++ +LGL + + Sbjct: 140 RERARRQLRLTRHAVEQAHDALFLVGPDGAYRDANAAACRLLGLTRKQLLRL------RV 193 Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 H D T RG ++E VR D + + + ++ S+G+ ++ Sbjct: 194 HDIDTQVNETSWPQRWHEMCERGSSRFETNVRHHDGHEIPVDVSVSLVT-SDGETFAHVC 252 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 + +D+ +++ + I D LTG+PNRQ + L L SAT V+V+++D Sbjct: 253 V-DDLRDRRAAERRIQQLLQFDELTGLPNRQRLFEHLGATLQTSATT-----AVLVLELD 306 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K+IND LG +GD VL + RI ++ D++AR G+ F I++ + + A Sbjct: 307 RFKRINDGLGPQIGDAVLREVAGRIAATVRSVDLVARRGGDEFVIVMPAPSVP--APHVA 364 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++IA P+ + EI +T IG A + + +L+ A A+ AK G N V Sbjct: 365 QTLLETIARPMTIEGHEIHLTCGIGIAMAPADGDRADTLLRRANAALEQAKRLGRNQVNV 424 Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + +++ ++ L A+ + + L Y P + L IVG+EAL++W HP G I Sbjct: 425 YAGAPHDDDPEQMALETALRHALRDEQFELHYQPQVDLAQGRIVGVEALLRWQHPTLGRI 484 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S F+ IAEE +I I ++L +W+ PP+ + +N++++ LL +L Sbjct: 485 SPDRFIPIAEETGLIVPIGDWVLRHAIEQAAAWQRARL-PPLRMAVNLSARQLLQPDLAR 543 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ L++ T P R + +ES+++GN +++ L LR +G+ ++LDDFGT S LSY Sbjct: 544 RIEGLLAATGLDPRRFGVEVTESMLIGNFDQAVQHLRALRALGVEVSLDDFGTGYSSLSY 603 Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L +P D VK + SL+ T + ++I R+II MA ++ ++A+ + E L Sbjct: 604 LRRLPVDVVKIDRSLVPDVTAPAEDVSITRAIITMAHQLQMKVLAEGVESEGQAALLAAN 663 Query: 931 GCDYIQDSHVA 941 CD +Q + Sbjct: 664 QCDQMQGWWFS 674 Score = 39.9 bits (92), Expect = 2.0, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 14/126 (11%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGR 478 D +G + G W ++ R + L S R Sbjct: 41 DADGVLRYANQAALQAIGATPEQVLGLRFETTPWWQGCKLSQR-RLQQALASASRGEASR 99 Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL------CN 532 +R M + P+ +G + I A+D++E++++ + Sbjct: 100 FDVRLAIR---GDTLAMDFSLLPLYGPDGRVAWLIPSAHDVSERERARRQLRLTRHAVEQ 156 Query: 533 AFQDNL 538 A D L Sbjct: 157 A-HDAL 161 >gi|327482494|gb|AEA85804.1| sensory box protein [Pseudomonas stutzeri DSM 4166] Length = 890 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 151/582 (25%), Positives = 261/582 (44%), Gaps = 16/582 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + A +Q S L AV S D P I Sbjct: 315 AGELADQYAQVLANQQRLSATHMLGLFQRAVEQSASAFILVDRDGRVEYVNPAFTAISQF 374 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + + G L + + S + + Q EFR R + + +W + I Sbjct: 375 SESEVRGQRLADLKAL--ENLGELLFDTSSVLAHSN-SWQGEFRSRRKNLEPYWGQLSIS 431 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + N +G + YIGI DIT K + + I A+ DNLT + NR F+ + A Sbjct: 432 KVFNDDGMLTHYIGIYEDITRSKLAHQHIERLAYTDNLTNLGNRPFFIRSIEERFAAGAE 491 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 R ++++DID +K+IND LG GD +L SL RR+ L +LAR + N F ++ Sbjct: 492 ---PRLCLLLVDIDNFKRINDSLGHQTGDKLLTSLARRLRNGLSQQSVLARFASNEFALL 548 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + I A + + + P+ + ++ I+V+ S+G A ++K+A A Sbjct: 549 FDDKGLEEGI-RLADQVLRILDKPLFVDKQLISVSGSLGLACSPQHGRDPETLMKHAGQA 607 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 ++ AK G N V+ F + + + +L A+ +EL + Y P + L + GL Sbjct: 608 LHKAKANGKNQVQIFTEALHAEANYKLFVENNLRRALLQNELEVFYQPKLCLHTGRLQGL 667 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+HP+ G I +F+ +AEE +I I +++ R ++ + P I I Sbjct: 668 EALLRWNHPEKGMIRPEQFISVAEETGLIIPIGKWVVREACRMGVTLSELGLGKP-QIAI 726 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ K D +L + A++ + +++L +ES+++ E +R L L+ +G++L Sbjct: 727 NLSPKQFSDPDLLSSIAAILLEEKLPAGQLELELTESLLLDATEETRQQLIGLKALGLTL 786 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916 +DDFGT S LSYL P D +K + S + + + I ++I MA+ + ++A+ Sbjct: 787 AMDDFGTGYSSLSYLKKFPIDVIKIDRSFIKDIPDNQDDVEITSAVIAMARKLHLKVVAE 846 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 I +K L R CD Q P+ + L+ R+P Sbjct: 847 GIETPEQLKFLRRHRCDIGQGYLFDKPIPGTGLTDALR-RYP 887 >gi|56461444|ref|YP_156725.1| intracellular signaling protein [Idiomarina loihiensis L2TR] gi|56180454|gb|AAV83176.1| Intracellular signaling protein (GAF,PAS,GGDEF,EAL domains) [Idiomarina loihiensis L2TR] Length = 766 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 133/571 (23%), Positives = 257/571 (45%), Gaps = 25/571 (4%) Query: 400 IFSDGERQSLA-VLGS--------GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450 I + +R+ A + S D V+ D+ + + + +L L + G Sbjct: 202 IEHEEQRRKQARLEQSQSSLFTHNPDAVFMLDLEGNFTSVNRSVCELLLLKEEDLLGKHY 261 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 + +D+ ++ E +V+ Q H + I P+ +G+I Sbjct: 262 ELA--VPESDQKRTSEHFEAAKAGIPQSY--EIKVKDQTGQLHDLAITNIPII-IDGEIT 316 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 GIA DITE+ + E + D+LT + NR + RL + + V+ Sbjct: 317 GVHGIAKDITERIQREEALEFFTSHDSLTHLVNRSAMEQRLQQL---QENKSDAAIFVLF 373 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 ID+D +K IND LG +GD+VL+ +R+ +++ P++L R G+ F ++ + ++ Sbjct: 374 IDLDGFKPINDSLGHYLGDEVLIETAQRLQQVVSEPNLLCRFGGDEFVAVIQDMSAVEQV 433 Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 + P + E E++++A+IG ++ E+ + A++AMY AK RGGN Sbjct: 434 NALCAEVLAVFEQPFRIGEVEVSLSAAIGVSANDIEFKHPMELTQRADVAMYEAKKRGGN 493 Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748 V + + +V ++ + A+ + L Y PI+ ++ G EALI+W HP Sbjct: 494 SVYWYSANLDEGLGYKVALRTKIQEALAQEQFELFYQPIMTDK-GQVAGAEALIRWQHPT 552 Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808 G +S ++F+ +AE I I+ ++L++ RD+ + + +N + Sbjct: 553 KGYVSPADFIPVAERTGQIIPISEWVLKQACRDLQQLKLYGIK---SVSVNFSPIQFYRE 609 Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868 + +A++ + P I + +E+V++ + +R LL +LR +G+ + +DDFG+ + Sbjct: 610 DFVSKTKAILEQFDIKPGEITVEITENVLVNDTQRIAELLQQLRDLGLDVAIDDFGSGFA 669 Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L YL +P + +K + S + E AI I+ M I +A+ + E + Sbjct: 670 SLRYLNMLPVNKLKIDRSFIENIHENSHNAAITCGILSMVAGIGIETVAEGVEKEEECAY 729 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 L GC ++Q + P +LK + + Sbjct: 730 LVEHGCHFMQGFLFSKPKPLGELLKWAERQQ 760 >gi|222080887|ref|YP_002540250.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] gi|221725566|gb|ACM28655.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84] Length = 766 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 137/496 (27%), Positives = 236/496 (47%), Gaps = 32/496 (6%) Query: 496 IIRIRPMSNSNGDILRYIGIAN--------DITE--------------QKKSLEGILCNA 533 R +S+++G I + + + D +E + ++ I A Sbjct: 271 QCRCLAISDADGQIEGILALYSSEGSRFQPDFSEFVSIAVHMAGIAISRHRAEARIGFLA 330 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LTG+ NR +LT + + + +D+D +K +ND LG +VGD +L Sbjct: 331 DHDPLTGMANRALLDRKLTFAMQTAD-STRSEVALAFLDLDNFKLVNDSLGHSVGDQLLK 389 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 + RI EL LAR+ G+ F IIL + + D A+R+++ PI L + E+ Sbjct: 390 IVASRISELTSDQGSLARIGGDEFVIILE-QMDLESCLDRLSAIREAVTRPIVLNDIELR 448 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DL 711 VT SIG AS+ S T+ E+L +A++AMY AK G + + F + R + +L Sbjct: 449 VTCSIGVASYPSHGSTAGELLASADMAMYRAKELGRDGIALFTSAMTAIVRKKLSRTDEL 508 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+ E L Y P + + IV EALI+W+H G + +F+ +AEE +I I Sbjct: 509 RQALLRDEFVLHYQPQVDVRTGRIVAAEALIRWNHSSEGLVYPGDFIALAEETSLIVPIG 568 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 ++L+ R +W+DQ PI I +N++++ + L E + +S++ P ++L Sbjct: 569 EWVLKTACRQAKAWQDQ-GREPIRISVNVSARQFQEKRLIETVATALSESGLDPIWLELE 627 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +ES++M + S + L +G+ L +DDFGT S LS L P +K + S + Sbjct: 628 ITESLIMKDLAGSIARMQELETLGVKLAVDDFGTGYSSLSALKRFPLSRLKIDRSFIADI 687 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 +AI +II +A+ + +IA+ + E + L GC+ IQ + P+ Sbjct: 688 PHDADDMAITAAIISLAQKLGLEVIAEGVETEEQARFLVESGCNEIQGYLFSRPVEEAQF 747 Query: 950 LKLLKERF---PLVKN 962 ++L+ PL++ Sbjct: 748 NRMLENNSGMHPLLRT 763 Score = 51.9 bits (123), Expect = 5e-04, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 25/173 (14%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTIL 468 + D ++ D+ + I GL+ + G ++ + T + Sbjct: 56 MINQIPDYIYAKDLEGRFLFANQAIVANNGLSHLKDLVGRTD--FDFL-PHHIAQIATDV 112 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + V + W++I P+ +++G I+ +G++ D+T QK + Sbjct: 113 ERSVAETGQPHFGGEELAFRGGGERWLMITRVPLRDASGTIVGVVGVSRDVTAQKSAERR 172 Query: 529 ILCNAFQDNLTG----------IPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571 + + G +PN FL+ L L + + + I Sbjct: 173 MRAQS------GLLEMIARGMPLPN---FLEEL--ALMTAGFAKGVHAAFLTI 214 >gi|229009972|ref|ZP_04167189.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] gi|228751310|gb|EEM01119.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048] Length = 689 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 119/549 (21%), Positives = 239/549 (43%), Gaps = 16/549 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G + +I+ F+ Sbjct: 149 FKSLLEYNNDSIISVDSIGRITYANPATYEIFGYRYEELKDQFIC--QFINKEYEKTFQI 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + R ++ + + + ++ +R P+ N +I+ + D+T Q + Sbjct: 207 IFKNALQGRAKQIVAK-KYIHKEGYELYISVRTIPII-VNSEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L L + ++ ID+D++ IND G Sbjct: 265 MKTEYLAYFDQLTGLMNRISCTNKLNEFLAENKE-----FALVFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + +L L R ++F +++ + + + A + K I+ Sbjct: 320 EGDQVLKKVTECLRDLKIEDMHLFREHDDQFVMLIENIT-REYVEEVAQTILKKISGHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704 + E ++ ++ASIG + + + + A+ AK +G + + R R Sbjct: 379 IEEEDVYLSASIGIVMAPEDGMDEKMLFQRVDAALEKAKEKGKGYYHFYCSGLDCEREQR 438 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 +I+ L A+E +E L Y P I + ++ +EALI+W++ + G +S ++F+ +AE Sbjct: 439 FIIENQLHRAIEKNEFSLYYQPQINIETGKMASMEALIRWENKELGFVSPNQFIPLAERT 498 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 I ++ +++ ++ I W ++ + I +NI+++ L E + ++K Sbjct: 499 GFIIKLDEWVVHQVCEQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + + +E ++ + + S+ +L +L++ + + LDDFGT S LSYL P DT+K + Sbjct: 558 PHLLAIEVTEGALI-HKDVSKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 S M G E+ I +II +A + +IA+ + I+ L +Q Sbjct: 617 RSFMEGIYKDERDTNITAAIIHLAHTLGLNVIAEGVEKAEQIQFLKEKNVKIVQGYFYNR 676 Query: 943 PLGFNSILK 951 PL + Sbjct: 677 PLSIYDVEN 685 >gi|330809204|ref|YP_004353666.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377312|gb|AEA68662.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 790 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 117/437 (26%), Positives = 227/437 (51%), Gaps = 6/437 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 E + A+ D LT +PNR F L+ + ++ + V+ +D+D++K++ND L Sbjct: 348 AYAENVEYLAYHDGLTALPNRSLFSKLLSRSIGEASRYHR-QLAVLFLDLDRFKQVNDTL 406 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + R+ L+ D +ARL G+ F I+L ++ +A A + +IA Sbjct: 407 GHDAGDQLLKEVALRLKACLRTSDTVARLGGDEFVILLPELSDDKDVATTAQKILGAIAR 466 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701 P NL +E VTAS+G + + + + KNA++AMY AK RG N+ + + ++++ Sbjct: 467 PFNLQGQEFRVTASVGISVFPQDGLDEQTLKKNADIAMYQAKQRGKNNFQFYSAKLNADS 526 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +R+ ++ L A+E E L Y + I G+EAL++W+HP G ++ +F+ +A Sbjct: 527 LERLTLELSLRHALERHEFQLHYQAKRDIGSGRITGMEALLRWNHPDLGIVAPMQFIPVA 586 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I I ++L+ + ++W+ Q P + + +N+ ++ D L + ++++T Sbjct: 587 EETGLIVPIGKWVLKTACQQNMAWQQQGL-PHLGVAVNLTARQFADENLLTDLAEILAET 645 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 ++L +ES++M + +R+ +L L+ + + + +DDFG S LS L P D + Sbjct: 646 GMDARLLELEIAESLLMQDVKRALSVLTGLKHLRVRIAIDDFGIGYSSLSALEQFPLDVI 705 Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + ++ + A+ +II M + + T++A+ + + L CD Q + Sbjct: 706 KIDRSCICDTSSVSEDKALTEAIIAMGRTLSLTVVAQGVETKEQADFLRDNACDEFQGFY 765 Query: 940 VASPLGFNSILKLLKER 956 P+ + LL+ + Sbjct: 766 FNKPVPADQFKVLLQAQ 782 >gi|239502470|ref|ZP_04661780.1| MorA [Acinetobacter baumannii AB900] gi|260556740|ref|ZP_05828958.1| signal transduction protein [Acinetobacter baumannii ATCC 19606] gi|260409999|gb|EEX03299.1| signal transduction protein [Acinetobacter baumannii ATCC 19606] Length = 949 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V T Q D E L + + + ++ D + + P + G + Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499 + + ++ + + + G +F + + ++ + I Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I+ YIG A D+T+QK+ + + D+LT +PNR + ++L L + Sbjct: 490 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ I+ID+++ N+ L GD++L +R+ ++A L+G+ F I Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I I + + +++ P + E+E +TASIG A + + +AE Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 A+ AK GGN + + + + ++++L A++N E + Y P I L D+ I G Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + + F+ AE +I I +L+++ + + W+ + + + Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI ++ + L + ++ S ++L +ES ++ N + + LL +++ IS+ Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917 LDDFGT S L+YL P D +K + + ++ +++ AI+ ++I M K++ ++A+ Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E + L + CD++Q + PL N IL+ L+ Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944 Score = 90.8 bits (224), Expect = 1e-15, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 40/327 (12%) Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284 + I+ L + + + ++S+ II L R+ Sbjct: 95 CLTSGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYF----- 149 Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 + + + + + ++ T Y + Y++ L+ Sbjct: 150 --YLLFIPSTVPLIIGQFTHSQINQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL--- 204 Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + L L V Q Q + Sbjct: 205 -------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERT 257 Query: 405 -------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI- 449 ER + A +G WDWDI + ++ T + + P+ Sbjct: 258 YDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTPLH 312 Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--N 506 ++ L IH NDR F L + + FR+ + + W+ R +S Sbjct: 313 LKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKT 372 Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533 LR +G+ DI ++KK E + +A Sbjct: 373 NKALRMVGMTRDIHQEKKDQEHLRLSA 399 >gi|254517294|ref|ZP_05129351.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma proteobacterium NOR5-3] gi|219674132|gb|EED30501.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma proteobacterium NOR5-3] Length = 1521 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 138/577 (23%), Positives = 251/577 (43%), Gaps = 16/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 V Q + T + + E L + S W D + TP + + G ++ Sbjct: 945 VYQDLSITMQLRSALKEEQELFHLLLDWTSNTEYW-TDADGNISYITPAVREMTGYSAEE 1003 Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMS 503 I + R ++ + + + +R D W+ R R M Sbjct: 1004 FIETPGLLSGIIAESSRADWLRHVSPEESPAKDQWKTITLPIRKRDGSQVWIEHRFRIMY 1063 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 +S+ IL Y G D+ E K + AF+D LT +PNR+ +L +S Sbjct: 1064 SSDSKILGYRGTMRDVDEVHKLEKEARDLAFKDPLTNLPNRRMIAVKLDEARTVSNRTYQ 1123 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 ++++DID +K++ND G VGD++LV + R+ + L+ D +AR+ G+ F +IL + Sbjct: 1124 Y-GALVMLDIDHFKRVNDTDGHGVGDELLVEVAARLRQRLRSFDTVARVGGDEFLMILNA 1182 Query: 624 E-NNSLKIADFAIAMRKSIAMPINLLER------EITVTASIGFASWTSSKITSSEMLKN 676 + ++ + A + I I+ + VT S G A + K T+ +LK Sbjct: 1183 LGQDQMEASLTASRICNEIRADISSEQNLTGASTSHHVTGSFGVALFVGDKETAETLLKQ 1242 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEE 734 A++A+Y AK G N V+ F + + L A E+ +L + Y + Sbjct: 1243 ADMALYSAKDNGRNRVKLFDPKMQADVDRRMASETALLGAQESGDLIMYYQLQTDAQ-GQ 1301 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 +EAL++W P S EFM + E+ ++ I +++ + W ++ + Sbjct: 1302 AKAVEALLRWKKPDGSMASPMEFMDVLEDQPLVSNIGHWVINTCFAQLKQWEADPDLHNL 1361 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 I INI++ L+++ + + LI P RI L +E+ ++ +R L+ +L Sbjct: 1362 DISINISAGYLVNDSFTKELGQLIESNSVDPRRIILELTENALLVESDRISTLMYKLSAR 1421 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912 G +LDDFGT S LS+L +P +K + S + G + +I++SI+ + + + Sbjct: 1422 GFRFSLDDFGTGFSSLSHLRDLPLAQLKIDQSFVAGLPDDLNCQSIVKSIVAVGQALNLE 1481 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 ++A+ + L +GCD Q A P+ + I Sbjct: 1482 VVAEGVETRAQCDFLQSLGCDLYQGYLFAHPVPADKI 1518 >gi|192288805|ref|YP_001989410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] gi|192282554|gb|ACE98934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] Length = 840 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 135/570 (23%), Positives = 258/570 (45%), Gaps = 14/570 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + Q A Q + E L W + R +P++ +LGL + Sbjct: 264 ITQLAAARTLLDQRTGALEEAHRL----GRIGTWTHRLDTGRTVWSPELYQLLGLEPDAF 319 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 PY +D I + + R+ D + I + S Sbjct: 320 EPTYEGTEPYFLDDDAVRLLKIQKRVLRTSTTE-ATDIRILHTDGAPRDLAIICKAEI-S 377 Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565 NG ++ IG A D+T++K++ + A+ D LTG+ NR + +L + + + Sbjct: 378 NGRVIGLIGTAQDVTDRKEAERRLEQLAYTDPLTGLANRALYKRKLADLFENPMAEHGQN 437 Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-E 624 + +ID+D++K++ND LG + GD +L+ + + + L +AR+ G+ F ++ S Sbjct: 438 -ALYLIDLDRFKEVNDSLGHSTGDSLLIHVAGVLRQELGPQAFIARIGGDEFAVLTNSPN 496 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + A + +++P+ L E E + A+IG A T+ + +NA+LA+Y A Sbjct: 497 TSVEATTALADRLIAKLSVPVELAEGEACIGATIGIAILPEHGATAEKASRNADLALYMA 556 Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G + F + ++ + L AV++ L Y P I L ++G EAL+ Sbjct: 557 KEAGRGRAQLFEPMYAEAVDQKLDLGRRLRHAVDSGGLNTHYQPQIDLKTGRVIGFEALL 616 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W HP+ G IS +EF+ IAE +I + ++L + + W D P I +N++ Sbjct: 617 RWSHPERGPISPAEFIPIAETTGLIVDLGHWVLRDACKQMRGWLDAGL-PARTISVNVSP 675 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLD 861 + + + + + +++ T P + L +E++ + + ++ L L K+GI L LD Sbjct: 676 AQIWNGDFEKVVATVLADTGLPPELLCLELTENLFVDHTKQKVSTTLAALSKLGIQLALD 735 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919 DFG+ S L YL +PF+ +K + + + G ++ +L II +A + +++A+ Sbjct: 736 DFGSGYSSLGYLTRLPFNRLKIDRTFVEGIATVPEKCKLLGGIIALAHGLGMSVVAEGAE 795 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 ++ LT CD++Q + P+ + Sbjct: 796 LAAEVDLLTAFDCDFVQGYVFSRPVAADQA 825 Score = 47.3 bits (111), Expect = 0.014, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 20/148 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT------TPDIATI 437 F +++ + + +R + V + D W+ + + T+ Sbjct: 131 FGIVRDATPETSALRQLAVSEQRLADFVSTASDWCWESGPDHRLLPYPKSLDGNAALQTV 190 Query: 438 L--GLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 G A + +H +D + R + + D Sbjct: 191 ASGGKARWELAYAPDEEGSMALHRDDMEAHR-----------PFRDFIYTSIGNDGSRII 239 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQ 522 + +P+ +G L Y G A+DIT+ Sbjct: 240 ISTSGKPIFADDGTFLGYRGTASDITQL 267 Score = 38.0 bits (87), Expect = 8.9, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 12/123 (9%) Query: 419 WD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---Y 474 W+ + + + ++ + + + H D IL Sbjct: 37 WESYSAAATDFWMSAEFTSL--YDAETPDDSVPLAPARDH--DLTESHAILQDHYAACWT 92 Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT----EQKKSLEGIL 530 E ++ D + ++ P ++NG + R GI D T ++ Sbjct: 93 EGRPFAVETKLIKPDGRLLDCVVHGEPEFDANGQVQRVFGIVRDATPETSALRQLAVSEQ 152 Query: 531 CNA 533 A Sbjct: 153 RLA 155 >gi|332140970|ref|YP_004426708.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Alteromonas macleodii str. 'Deep ecotype'] gi|327550992|gb|AEA97710.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Alteromonas macleodii str. 'Deep ecotype'] Length = 573 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 121/543 (22%), Positives = 235/543 (43%), Gaps = 13/543 (2%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRL 479 +D R+ + + G + G I N RD ++ + Sbjct: 37 YDKHRNVIYWNKSSEDMYGYSKDEALGQKLE--DLIIPNFMRDEVVKFHQRWIEFDEAIP 94 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 E ++ D Q + + + Y + D++EQ + + A D LT Sbjct: 95 SNELVLKKKDGQPIHVFSSHVMLKQGSDSPEMY-CVDIDLSEQHEIRLELERMASTDLLT 153 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 +PNR+ L +I++ T N + ID+D +K+IND LG GD++L ++ +R+ Sbjct: 154 DLPNRRVLEQTLISIIEDV-THSNSGFALFFIDLDMFKEINDTLGHTWGDELLKAVAKRL 212 Query: 600 GELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + +LAR G+ F + + + ++ + A + L + +T+SI Sbjct: 213 VSCIDSANGMLARFGGDEFVYVANNITDEIQCEEIAKKLTDCFKKSFELSTESVHITSSI 272 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVE 716 G + + ++LK+A+ AMY AK G N F S + I L +++ Sbjct: 273 GISIFPRDGDGIDDLLKHADAAMYQAKAEGRNRYHFFTKTLSQRLRQQRSIAARLRESLK 332 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDH-PKWGNISSSEFMLIAEELCMIKAINLFML 775 E L++ P I + + EAL++W + + + F+ IAE +I I ++L Sbjct: 333 KDEFELLFQPQIDVKTGKFTSCEALLRWRPLDEESAVPPNIFIPIAERSELIADIGRWVL 392 Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835 E+ + W+ + + I IN++ K+L + E + A S SP I L +E+ Sbjct: 393 EKTCQQSKKWKQKGIG--VRIDINVSGKELEKSSFFERLTACRSHYGLSPEDIGLELTEN 450 Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894 V++ + L R +G+ +++DDFGT S LSYL P +K + S + G+ E Sbjct: 451 VLIKSDNAILENLRAQRDLGVEISIDDFGTGYSSLSYLKQFPVSHLKIDRSFLKGAPENA 510 Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A++ +I+ + ++ I+ + + + + +++Q + P+ +I LL Sbjct: 511 YDSALMEAIVNVGHKLDLKIVVEGVETQSQSDYCKSLNVEFVQGFLYSRPISAEAIEALL 570 Query: 954 KER 956 +++ Sbjct: 571 EKQ 573 >gi|289678768|ref|ZP_06499658.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 579 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 125/580 (21%), Positives = 229/580 (39%), Gaps = 18/580 (3%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 ++ + + R S D + D ++ I G S Sbjct: 1 MVIERMELRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAELIFGHRSEDA 60 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPM 502 G + I R L + D + + + Sbjct: 61 MGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAIHRDGHTLPIELSLS-Q 117 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G+ I DIT++ ++ + + A D+LTG+ NR + R+ D Sbjct: 118 WTYAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC-----DA 171 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + +++ID+D +K +ND LG A GD VL + R+ E + +++RL G+ F + L Sbjct: 172 QMSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGDEFVVFLS 231 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + K +A+ I PI + I + ASIG + + + +ML NA+LA+Y Sbjct: 232 DTADPEKAIKLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGADYDDEQMLGNADLALY 291 Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G + V +F ++ + + A N E L Y P +RL D I G EA Sbjct: 292 QAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADGRITGAEA 351 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W+HP G +S + F+ E + + ++L WR+ I +N+ Sbjct: 352 LIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAKWRNTGCEE-FRIGVNL 410 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + E +++ + ++L +E++++ N +R L LR +G+ + Sbjct: 411 FAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRSLGVGIAF 470 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT + LS L P +K + S ++G ++K I+ +++ +A + A+ I Sbjct: 471 DDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNLQVTAEGI 530 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957 + CD Q P+ + + + Sbjct: 531 ETREQESLMRHYVCDEGQGYLYGRPMPAHDFTERYISSHN 570 >gi|254239213|ref|ZP_04932536.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719] gi|126171144|gb|EAZ56655.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719] Length = 823 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 123/586 (20%), Positives = 241/586 (41%), Gaps = 15/586 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++++L Q ++ + ++ ER + + GD V D P Sbjct: 218 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 277 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490 + G P+ + + + R+ +++ + GR + +R D Sbjct: 278 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 336 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + P+ G+I + + +D+T +++ + + A D LTG+ NR+ F R Sbjct: 337 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 395 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L+ + R +M +D+D++K +ND G A GD++L + + + L+ D LA Sbjct: 396 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 454 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ FGI+L + + + + + T S+G T Sbjct: 455 RLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 514 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726 E L++A++A Y AK +G N V+ F R + + + LA+E L P Sbjct: 515 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 574 Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 I+ L + + +E L++ + F+ AE ++ I+ +++E R ++ Sbjct: 575 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 634 Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 PI IN++ + D + + L ++ P I +E+V + N Sbjct: 635 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 694 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + + L+ G +LDDF S YL ++P D +K +GS + A+++ Sbjct: 695 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 754 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I + + IA+ + ++ L +G DY Q + +PL F+ Sbjct: 755 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 800 >gi|332875287|ref|ZP_08443119.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] gi|323518771|gb|ADX93152.1| signal transduction protein [Acinetobacter baumannii TCDC-AB0715] gi|332736544|gb|EGJ67539.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6014059] Length = 949 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V T Q D E L + + + ++ D + + P + G + Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499 + + ++ + + + G +F + + ++ + I Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I+ YIG A D+T+QK+ + + D+LT +PNR + ++L L + Sbjct: 490 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ I+ID+++ N+ L GD++L +R+ ++A L+G+ F I Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I I + + +++ P + E+E +TASIG A + + +AE Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 A+ AK GGN + + + + ++++L A++N E + Y P I L D+ I G Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + + F+ AE +I I +L+++ + + W+ + + + Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI ++ + L + ++ S ++L +ES ++ N + + LL +++ IS+ Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917 LDDFGT S L+YL P D +K + + ++ +++ AI+ ++I M K++ ++A+ Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E + L + CD++Q + PL N IL+ L+ Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944 Score = 91.2 bits (225), Expect = 7e-16, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 40/327 (12%) Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284 + I+ L + + + ++S+ II L R+ Sbjct: 95 CLTSGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYF----- 149 Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344 + + + + + ++ T Y + Y++ L+ Sbjct: 150 --YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL--- 204 Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404 + + L L V Q Q + Sbjct: 205 -------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERT 257 Query: 405 -------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI- 449 ER + A +G WDWDI + ++ T + + P+ Sbjct: 258 YDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTPLH 312 Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--N 506 ++ L IH NDR F L + + FR+ + + W+ R +S Sbjct: 313 LKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKT 372 Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533 LR +G+ DI ++KK E + +A Sbjct: 373 NKALRMVGMTRDIHQEKKDQEHLRLSA 399 >gi|302189446|ref|ZP_07266119.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 732 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 127/587 (21%), Positives = 230/587 (39%), Gaps = 18/587 (3%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ ++ + + R S D + D + I Sbjct: 147 VLQDLAIMVIEKMELRRLELENEDNHTRFMNITSTSPDAIICSDSKNRITSWNNSAELIF 206 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495 G + G + I R L + D + Sbjct: 207 GHRAEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPTSIIGKSINLTAIHRDGHTIPI 264 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + G+ I DIT++ ++ + + A D+LTG+ NR + R+ Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D L +++ID+D +K +ND LG A GD VL + R+ E + +++RL G+ Sbjct: 323 -----DAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGD 377 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F + L + K +A+ I PI + I + ASIG + S +ML Sbjct: 378 EFVVFLSDTADPDKAIKLGLALIAVIEEPIEFEDNSIYIGASIGVSVRCGSDYDEEQMLG 437 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE- 556 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 +G+ + DDFGT + LS L P +K + S ++G ++K I+ +++ +A Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVVRLANGFNL 676 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957 + A+ I + CD Q P+ ++ + + Sbjct: 677 QVTAEGIETPEQESLMRHYVCDEGQGYLYGRPMPAHAFTERYISSHN 723 >gi|187920151|ref|YP_001889182.1| RNase II stability modulator [Burkholderia phytofirmans PsJN] gi|187718589|gb|ACD19812.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia phytofirmans PsJN] Length = 689 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 134/542 (24%), Positives = 247/542 (45%), Gaps = 11/542 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + G+ ++ G W ++ D + F R + Sbjct: 151 DRHGRIQRFNRLAEELTGVKEENIVGRN-VWALFMSTEDGAASSQNIAGFF-NRGVSYEV 208 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E RV+ + ++ S S D I DITE++ + E + A D+LTG+ Sbjct: 209 ERRVKTVHGERLFLFRNKFVQSGSGIDEQFLICSGTDITEERLAQERLTQLANTDSLTGL 268 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 NR + D++ ++ +A V+ +D+D +KK+ND G GD ++ ++ I E Sbjct: 269 ANRNAIQDKIRAAIEDAA--PGEAVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSSAISE 326 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D LARL G+ F I+L ++ + ++ A + + + P L E+ SIG A Sbjct: 327 CLNEGDTLARLGGDEF-IVLAAKGTAHELETTAQRILERMRTPFALGLVEVYTGCSIGIA 385 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 + + ++++A+ AMY AK G F R + + + +L +E + Sbjct: 386 RYPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRRVAEYMWLDTNLRRGLEEGQ 445 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L L Y P + L + G+EAL++W+ P+ G I SEF+ AEE +I + +++E Sbjct: 446 LTLHYQPKLSLATGVVQGVEALVRWNSPERGQIMPSEFIRYAEESGLIGVLGRWVMET-- 503 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + + +A+ + I IN++++ L+D + + P I L +ES ++ Sbjct: 504 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFSEALQNARLDPCLIDLELTESCLIE 563 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897 + + L+ + R++G + LDDFGT S LS LG IP D +K + S + A Sbjct: 564 DETAAIDLIRQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADTKAQA 623 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++RS++ +A+ + ++A+ I E + + +G DY+Q + + L++R Sbjct: 624 LVRSMVAVAQELNFKVVAEGIETESEEVFMKGLGVDYVQGFLYGQAMPAAEFERWLQDRQ 683 Query: 958 PL 959 L Sbjct: 684 KL 685 >gi|330985324|gb|EGH83427.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 584 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + + A DNLTG+PNR DR+ + + +M +D+D +K +ND Sbjct: 135 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 193 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + R+ L D LAR+ G+ F +L+ ++ A I Sbjct: 194 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 252 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++ ++ SIG + + T E+L NA+ AMYH K G N F ++S Sbjct: 253 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 312 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +++ + +DL A+++ + + Y P + +G EAL++W+HP+ G + +F+ +A Sbjct: 313 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 372 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I ++L+ R + W Q I +N+++ L + +++ Sbjct: 373 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 431 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + + L +E+ M + + S +L RL ++G+ L++DDFGT S L YL +P + + Sbjct: 432 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 491 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + AI+ +I+ + + + I+A+ + + + LT +GC +Q Sbjct: 492 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 551 Query: 940 VASPLGFNSILKLLKE 955 + PL L ++ Sbjct: 552 LGYPLPAEQFLDEIRA 567 >gi|294497851|ref|YP_003561551.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM B1551] gi|294347788|gb|ADE68117.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM B1551] Length = 843 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 116/451 (25%), Positives = 220/451 (48%), Gaps = 10/451 (2%) Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566 + ++ D + KKS E +A+ D LTG+PNR+ F ++L L S Sbjct: 392 NHLSHFLKTYVD--DLKKSQEESEYHAYHDFLTGLPNRRYFKEQLNRRLIESKEKSIRHV 449 Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISEN 625 V+ +DID++K IND LG + GD ++ + RI E L L R G+ F I+ Sbjct: 450 AVLFMDIDRFKDINDTLGHSKGDQLIQLIANRIKECLPSANSFLTRQGGDEFVILFSDFT 509 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ + + P + E+ V+ S G + + ++ A++AMY +K Sbjct: 510 -PEEVKGITEKIMAYVQQPCYIDNDEVFVSISSGLSFYPEHSTNLDTLITYADVAMYASK 568 Query: 686 HRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 +GG+ V + + ++++V I+ L A++ ++ + Y P I I G+EAL++ Sbjct: 569 RQGGSKVSIYHDSLNKKQAEKVHIETRLRKAIQKGDIDVYYQPKIEAKRNVITGVEALVR 628 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803 W+ + G +S F+ IAEE +I+ + ++++ + W + + + +N + + Sbjct: 629 WNDAELGFVSPEAFIPIAEEAGLIQYLWEVVMKKACSQVSEWNK-VSDEKMTLAVNFSPR 687 Query: 804 DLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 D L ++ +S + P+ ++ +ES ++ N E + L L+K GIS+++DD Sbjct: 688 QFQDPVVLVNEIKHFLSLHRFDPAWFEMEITESTLLMNAEETIKALHLLKKYGISISIDD 747 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920 FGT S LSYL +P D +K + S + E I ++II ++++++ +IA+ + Sbjct: 748 FGTGYSSLSYLKKLPIDCLKIDRSFIQDIQEDYSNSEIAQAIISLSQSLKLEVIAEGVEE 807 Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 E L + GCD++Q + PL + Sbjct: 808 EYQKAFLMKNGCDHMQGYLFSKPLAAEDFEE 838 >gi|159186276|ref|NP_355973.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] gi|159141410|gb|AAK88758.2| GGDEF family protein [Agrobacterium tumefaciens str. C58] Length = 724 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 149/583 (25%), Positives = 266/583 (45%), Gaps = 30/583 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI------VWDWDIVRDRVTTTPDIATI 437 H+L + I E A+ V++ + V +P +A Sbjct: 150 LQAQAHILEMIVAAARIEDFLEEFVKAIENLATGLACAVRVFEAAVGEPSVYVSPALAQQ 209 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 GL + + + + H + F + + G G + R D I Sbjct: 210 AGLTA--LISNVSDPESLAHSGEDTAFSFDIPASEGKAHGFVWCRLAGRKPDEALVEFI- 266 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 G R G+A D +K++ E I A D LT +PNR+ RL IL Sbjct: 267 ---------GAAARMAGLAID---RKRAAEHIAFLADHDMLTRLPNRRFLDTRLPEILAA 314 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 +A + R + +D+D +K+IND LG ++GD +L RI L D++ R+ G+ F Sbjct: 315 AAKANR-RVGIGFLDLDNFKQINDTLGHSIGDALLSKTAERIAASLGQNDLVLRVGGDEF 373 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 IIL + + +R +++ P+ + +I VT SIG A + T++E++ A Sbjct: 374 VIILEEHKD--DVEKHLQRIRAAVSQPLRIRNYDIKVTCSIGMAFFPEHGKTTAEIVAAA 431 Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LAMY KH G + + +F + + E++ AVE E L + P + L + I Sbjct: 432 DLAMYEVKHNGRDSIATFTPNMADDLRKKFTRIEEMRKAVERDEFVLHFQPQVDLANGRI 491 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 G+EAL++W HP G + EF+ +AEE +I + +L++ R +W P+ Sbjct: 492 SGVEALVRWQHPTEGLLGPVEFIGLAEETGLIVELGANILKKACRQAQAWVAAGL-SPVK 550 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +NI+ + L + +++++ +T +PS +++ +E++++ + E S ++ ++++G Sbjct: 551 MAVNISPRQF-QGGLVQQIRSVLKETGLAPSLLEIEITETLIIQDVETSVRIMHAIKQMG 609 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913 +SL LDDFG S L L P +K + S +T E K AI+ +I +A ++ + Sbjct: 610 VSLALDDFGIGYSCLGMLKTFPLSCMKIDRSFLTHLPEKTKDSAIVTIMIQLAGSLGIDV 669 Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 IA+ + L GC Y Q + + PL ++I L R Sbjct: 670 IAEGVETAEQANFLRTAGCPYGQGYYFSRPLPADAIEATLANR 712 Score = 51.9 bits (123), Expect = 5e-04, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 19/137 (13%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTT---------PDIATILGLASGSMHGPIRNWLPYIH 457 + D ++ D+ + + ++GL +HG Sbjct: 29 LEAMIDHVPDFIYAKDLEGRFLFANRAIVNENGFESVEELIGLTDYDIHGEAARHAGI-- 86 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + L YE R D W+++ P+ + +G+I+ +G + Sbjct: 87 PDTEARVMRT-------GEPDLGYEERAMRGD-VDRWLMMSRVPLKDKSGEIIGVVGASR 138 Query: 518 DITEQKKSLEGILCNAF 534 DIT++K S + A Sbjct: 139 DITQKKASERLLQAQAH 155 >gi|330888919|gb|EGH21580.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. mori str. 301020] Length = 732 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 128/580 (22%), Positives = 231/580 (39%), Gaps = 17/580 (2%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ ++ + + R S D + D ++ I Sbjct: 147 VLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495 G S G + I R L + D + Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVASGGPTFIIGKSINLTAIHRDGHTIPI 264 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + + + G I D+T++ ++ + + A D+LTG+ NR + R+ Sbjct: 265 ELSLSQWTYAGGPQFG--AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D L +++ID+D +K +ND LG A GD VL ++R+ E + ++ARL G+ Sbjct: 323 -----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGGD 377 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F + L + +A+ I PI + I + ASIG + + S +ML Sbjct: 378 EFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQMLG 437 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGWDE- 556 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 +G+ + DDFGT + LS L P +K + S ++G ++K I+ ++I +A Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFNL 676 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + A+ I + CD Q P+ + + Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716 >gi|119511103|ref|ZP_01630222.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with GAF sensor and FHA domain [Nodularia spumigena CCY9414] gi|119464274|gb|EAW45192.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with GAF sensor and FHA domain [Nodularia spumigena CCY9414] Length = 868 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 111/438 (25%), Positives = 227/438 (51%), Gaps = 6/438 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 ++++ E I A D+LTG+PNR F + L L + + VM +D+D +K IN Sbjct: 431 QRQQVSEKIRFQALHDHLTGLPNRLLFNELLEKALPNAIRNGE-SLAVMFLDLDLFKLIN 489 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +GD +L + +R+ L+ D +AR G+ F I+L N +++ A + + Sbjct: 490 DTLGHTLGDRLLKEVAQRLKGCLRGGDTVARWGGDEFTILLPRMNYLEEVSLVAQRILGA 549 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698 + L E+ V+ S+G A + ++++A+ A+Y+AK +G N+ + + Sbjct: 550 LDNVFYLDGHELYVSGSLGIAILDEHSADAETLIQHADTALYYAKDQGRNNYHFYSKTLN 609 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + + + + L A+E EL + Y P + + +I G+EAL++W HP+ G ++ + F+ Sbjct: 610 TKNPELLTLDKSLRYALERKELVVYYQPRVNIKTRKITGMEALLRWQHPEMGLVAPNVFI 669 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAEE +I I ++L +W+ PP+ I +N++ K +L + + ++ Sbjct: 670 PIAEESGLIIPIGEWVLRTACMQNKAWQQAGL-PPLTIAVNLSPKQFRKPQLVDTVAKIL 728 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 ++T P ++L +E+ + + + +R +L L ++G++L++DDFGT S LS L +PF Sbjct: 729 AQTDLEPKFLELEITETTAIEDLDFTRTVLQDLTQMGVNLSIDDFGTGHSSLSRLQLLPF 788 Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + + T+ I+++I+ + +++ + A+ + + ++ L + C+ +Q Sbjct: 789 HNLKIDKYFIQELTKDEKVAHIVQAIVTLGRSLGLRLTAEGVEKQEELDFLASINCEDVQ 848 Query: 937 DSHVASPLGFNSILKLLK 954 L ++L+ Sbjct: 849 GFFFYKALPSEKATEILQ 866 >gi|23098814|ref|NP_692280.1| truncated nitrogen fixation positive activator [Oceanobacillus iheyensis HTE831] gi|22777041|dbj|BAC13315.1| nitrogen fixation positive activator (partial) [Oceanobacillus iheyensis HTE831] Length = 539 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 134/549 (24%), Positives = 254/549 (46%), Gaps = 29/549 (5%) Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV---GYRRG 477 D+ + + L + G I ++ + ++ Sbjct: 5 IDVNGNLIYANDSFCKRLNYTEEDIFGKP---FNRI-------LKSPFPLHIVREQNKKA 54 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537 + E +++ D+ W + P + +G+ + I DIT +K E I AF D Sbjct: 55 VWKEEIQIQTKDDTTCWFEASMVPYYDQDGNPDKTITTYYDITARKHYEEYIEGIAFTDY 114 Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597 LT +PN ++L +D D N ++ I +D++K+IN+ G + D V+ + Sbjct: 115 LTKLPN----QNQLYHWIDEQQIDINNTKAILYISLDRFKQINEAFGKRIADKVIRMVAE 170 Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657 R+ + L R G+ F +I+ + N + A ++ + +P + + +I++T S Sbjct: 171 RLQNFQTKDNFLFRKDGDEFVVIIKEQLNQEECMAKAESIVNKLRIPYKIQDSQISITVS 230 Query: 658 IGF-----ASWTSSKITSSEM---LKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MI 707 IG +++T+ E+ +K A AM AK +GGN + +I Sbjct: 231 IGIRFPYKSAYTNGHSKYDEIDTSIKQARKAMDLAKKKGGNRYCIHAHHQEKPLERGYII 290 Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767 +L A+ E ++Y PII L ++VG EAL++W++ + G +S EF+ EE MI Sbjct: 291 DLELKEALAREEFSIMYQPIINLKSHKVVGAEALLRWNNRELGFVSPDEFIPKLEESGMI 350 Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827 ++ ++LE + R + SW+++ + I +N++ D + ++ +++ T+ S Sbjct: 351 ISVGKWILENVCRRMKSWQEKGLLMQ-RISVNVSPIQFKDKYFVQDVKEILNDTMLDASY 409 Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887 +++ +ES ++ N E S L + L+ +G+ +++DDFGT S LSYL +P DT+K + S Sbjct: 410 LEIEITESTIL-NLESSMLTILELKSLGMHVSIDDFGTGYSSLSYLKQLPIDTLKIDKSF 468 Query: 888 MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 + I +II M KN+ IIA+ I E ++ L C Q + P+ N Sbjct: 469 IDDLDRDGEIITNTIINMGKNLHFRIIAEGIESEKQLEYLKSQQCHEGQGYLFSKPVQPN 528 Query: 948 SILKLLKER 956 I+ +L ++ Sbjct: 529 EIMTMLLQQ 537 >gi|91793351|ref|YP_563002.1| GGDEF domain-containing protein [Shewanella denitrificans OS217] gi|91715353|gb|ABE55279.1| GGDEF domain [Shewanella denitrificans OS217] Length = 855 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 140/609 (22%), Positives = 268/609 (44%), Gaps = 13/609 (2%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413 + + + + + + ++ +IGF+ I + + + ER S Sbjct: 251 MQLKMLGIEHDVLWLNLRLSAVMENNHVIGFSAIIYNITASLIDR---QKIERYSSIFNH 307 Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473 + + D V P + GL G L I R L ++ Sbjct: 308 TSHGILVLDHNGKVVEVNPGFLALTGLPIEPFLGRDFTKLNSIKFT--KEQRASLRLYIK 365 Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + Q E + ++ + + + ++ + + DI++ K + +L Sbjct: 366 AGK-PWQGEVVHIHLNGISRISLLSLFVLPSQMVELQQLVCFFTDISDIKSYQDQLLYLT 424 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D TG+ NR F+ L L A D + V +D+D +K IND G A+GD+ + Sbjct: 425 RHDKNTGLYNRLHFVTLLDYELKRCARDGR-QLAVCFLDVDNFKDINDTFGHAIGDEFIA 483 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 L + L+ D++AR G+ F I E +R+ ++ + I Sbjct: 484 LLATNLKNKLRQTDVIARFGGDEFIIFFEIEAEQQSAEQSITNIRQLVSGEFITSQAVIN 543 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDL 711 + S+G A + + +TS+E++KNA+ AMYHAK +G +R + I ED+ Sbjct: 544 ASVSLGIAIYPNDGLTSAELIKNADTAMYHAKKQGVGSFAYYRQALTEQVVRRISIVEDI 603 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+ ++ + Y P I ++ EEI G EALI+W HP G I+ +F+ +AEEL +I ++ Sbjct: 604 KQALLLNQFEMWYQPQIDVITEEISGAEALIRWQHPTKGLINPIDFIPLAEELGLIAEVD 663 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 +++ + + W ++ + +N+++K ++ + IS+ PS I++ Sbjct: 664 RWVMNSVFNQVFKWHEKKLFFG-RVALNVSTKTFKQSKFRQHYAEAISQYQIDPSHIEIE 722 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +E + E L L+ +G + +DDFGT S LS L IP + +K + S + Sbjct: 723 ITEGAF-SDEEDISPFLQELQSLGYGIAIDDFGTGYSSLSRLRSIPVNRLKIDRSFIDPI 781 Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 T+ A+++SII +A +++ +IA+ I + + L +GC+++Q +++ PL Sbjct: 782 TDSLAAKALVKSIINLAHSLDLCVIAEGIETQQHLTILKELGCNHMQGYYISRPLPVALF 841 Query: 950 LKLLKERFP 958 ++ P Sbjct: 842 EMFVQSYCP 850 >gi|169795276|ref|YP_001713069.1| hypothetical protein ABAYE1139 [Acinetobacter baumannii AYE] gi|184158859|ref|YP_001847198.1| signal transduction protein [Acinetobacter baumannii ACICU] gi|215482809|ref|YP_002325012.1| MorA [Acinetobacter baumannii AB307-0294] gi|301510424|ref|ZP_07235661.1| MorA [Acinetobacter baumannii AB058] gi|332850383|ref|ZP_08432703.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332871822|ref|ZP_08440245.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] gi|169148203|emb|CAM86066.1| conserved hypothetical protein; putative membrane protein with diguanylate cyclase (GGDEF) domain [Acinetobacter baumannii AYE] gi|183210453|gb|ACC57851.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Acinetobacter baumannii ACICU] gi|193077878|gb|ABO12759.2| sensory box protein [Acinetobacter baumannii ATCC 17978] gi|213986121|gb|ACJ56420.1| MorA [Acinetobacter baumannii AB307-0294] gi|332730654|gb|EGJ61965.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013150] gi|332731151|gb|EGJ62451.1| diguanylate cyclase domain protein [Acinetobacter baumannii 6013113] Length = 949 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V T Q D E L + + + ++ D + + P + G + Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499 + + ++ + + + G +F + + ++ + I Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I+ YIG A D+T+QK+ + + D+LT +PNR + ++L L + Sbjct: 490 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ I+ID+++ N+ L GD++L +R+ ++A L+G+ F I Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I I + + +++ P + E+E +TASIG A + + +AE Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 A+ AK GGN + + + + ++++L A++N E + Y P I L D+ I G Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + + F+ AE +I I +L+++ + + W+ + + + Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI ++ + L + ++ S ++L +ES ++ N + + LL +++ IS+ Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917 LDDFGT S L+YL P D +K + + ++ +++ AI+ ++I M K++ ++A+ Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E + L + CD++Q + PL N IL+ L+ Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944 Score = 91.9 bits (227), Expect = 5e-16, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 97/333 (29%), Gaps = 40/333 (12%) Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW 278 + + + I+ L + + + ++S+ II L R+ Sbjct: 89 LVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRY 148 Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + + + + + ++ T Y + Y++ Sbjct: 149 F-------YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKIS 201 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 L+ + + L L V Q Q Sbjct: 202 QLL----------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ 251 Query: 399 GIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + ER + A +G WDWDI + ++ T + Sbjct: 252 KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQT 306 Query: 445 MHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + P+ ++ L IH NDR F L + + FR+ + + W+ R + Sbjct: 307 QNTPLHLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVI 366 Query: 503 SNS--NGDILRYIGIANDITEQKKSLEGILCNA 533 S LR +G+ DI ++KK E + +A Sbjct: 367 SRDPKTNKALRMVGMTRDIHQEKKDQEHLRLSA 399 >gi|42779683|ref|NP_976930.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] gi|42735600|gb|AAS39538.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987] Length = 702 Score = 469 bits (1207), Expect = e-129, Method: Composition-based stats. Identities = 124/562 (22%), Positives = 249/562 (44%), Gaps = 29/562 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + + D + D + P I G ++ +I+ +F++ Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQS 206 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 I + + ++ + + + ++ +R P+ NG+I+ + D+T Q + Sbjct: 207 IFKGSMQGKAKQIVSK-KYIHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 A+ D LTG+ NR S ++L T+L +DN+ ++ ID+D++ IND G Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNTLL-----NDNIEFALVFIDLDEFHLINDTFGHK 319 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD VL +T + L R ++F +++ + ++ A + K I+ Sbjct: 320 EGDKVLQKVTECLSSFEIAGMHLFREHDDQFVMLIENIT-KERVEGVAKNILKRISEHFV 378 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---------------NH 691 + E ++ ++ASIG + + + + A+ AK +G H Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYALEKAKEKGKGHYH 438 Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + R R +I+ L A+E +E +L Y P I + ++I +EALI+W++ + G Sbjct: 439 FYCSGLDCEREQRFIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGF 498 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S ++F+ +AE I ++ +++ + R I W ++ + I +NI+++ L Sbjct: 499 VSPNQFIPLAERTGFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLI 557 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + + K + + +E ++ + + S+ +L +L++ + + LDDFGT S LS Sbjct: 558 EMITRALHKYNVPAHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLS 616 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + S M G E+ I +II +A +E +IA+ + I+ L Sbjct: 617 YLKTYPIDTLKIDRSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKE 676 Query: 930 MGCDYIQDSHVASPLGFNSILK 951 ++Q + + PL + Sbjct: 677 KNVKFVQGYYYSRPLSKYDVEN 698 >gi|289679897|ref|ZP_06500787.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 609 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 146/553 (26%), Positives = 261/553 (47%), Gaps = 26/553 (4%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451 + + E+ + A S D + +I R V + G ++ + G + Sbjct: 67 AQIALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFTRLTGFSAQEVLGRTAHEVG 126 Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510 W + R++ L + E R + I + ++ +N Sbjct: 127 IWTDTLQ---REHMLEELR----QKGRVHHREMDGRDKHGAPLVLDISVEFITLNN--TA 177 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 + A DI K + I A+ D LTG+PNR LDRL+ + L NLR ++ Sbjct: 178 CLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQ-HQNLRGALLF 236 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK- 629 +D+D +K IND LG VGD VL + R+ ++ D +ARL G+ F +++ S Sbjct: 237 LDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDE 296 Query: 630 ----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 + + A +R +A P+ L + VT SIG +T +++LK A++A+Y AK Sbjct: 297 VTQQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAK 356 Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 G N + F VS + S R+ ++ DL LA+ +E +L + + +E I G EAL++ Sbjct: 357 DCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLR 416 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801 W HP++G ++ +F+ I EE MI + +L + Q +P + +NI+ Sbjct: 417 WQHPEYGLMAPDQFVQILEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGVNIS 476 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L ++ E ++ ++ S +KL +E +V+ N + + L + L+ +G+S +D Sbjct: 477 PRQFLQHDFIERVERSLTLNQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMD 536 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S L+YL +P DT+K + S + + I+R+I+ MA+++ +IA+ + Sbjct: 537 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVE 596 Query: 920 GEIDIKELTRMGC 932 + L ++GC Sbjct: 597 TSEQLAFLEKVGC 609 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +R R + + + + LQ +R + + + R R + G +R G D Sbjct: 2 EERRRMRALYAAALETGQDCLQVTYRFQLKNGTSRLLEGRARIYRDEQGQPVRLSGTLMD 61 Query: 519 ITEQK-----KSLEGILCNAFQ---DNLT 539 IT+Q ++ E AF D++T Sbjct: 62 ITQQCAQIALEASEEKFAKAFHSSPDSIT 90 >gi|209548399|ref|YP_002280316.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534155|gb|ACI54090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 765 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 133/440 (30%), Positives = 230/440 (52%), Gaps = 6/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K+ + I A D+LTG+PNR +RL ILD + + TV ID+D +K IN Sbjct: 326 ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRHTR-KVTVAYIDLDNFKDIN 384 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639 D G A GD+VL R+ ++ D++ RL G+ F ++L+ +++ I ++K Sbjct: 385 DGRGHAAGDEVLKETAARMANSIRASDMVVRLGGDEFLVVLVHQSSHDAGITRRLRELQK 444 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +I PI EITVT+SIG A++ TS E+L NA+ AMY AK G N ++ Sbjct: 445 AINRPIPSEGGEITVTSSIGVAAFPFDGATSEELLANADRAMYRAKELGRNTLQHHDGGG 504 Query: 700 FRSDRVMIKED-LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + +++ L A+ +L+L Y P + + I G+EAL++W+HP G + F+ Sbjct: 505 TPVGMPLGEQEELHQAITGDQLFLQYQPQVDVATGRITGIEALVRWNHPAKGRVPPVNFI 564 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I + L++L R W+D P+ I +N+++K D + + + Sbjct: 565 PLAEETGLIVPLGLWVLNEACRQARQWQDMGL-TPLTIAVNVSAKQFADPDFASHVAEAL 623 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + ++L +ESVVM + ER+ ++ LR +G+ L++DDFG+ S L+ L PF Sbjct: 624 ERHRLQARWLELEVTESVVMQDAERALAMMESLRALGVRLSIDDFGSGYSSLAALKTFPF 683 Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + SL+ + AI ++I +A+ ++ +++A+ + + + L C+ Q Sbjct: 684 DRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSVLAEGVETDAQMDFLRHAHCEEAQ 743 Query: 937 DSHVASPLGFNSILKLLKER 956 + P+ I LL+ R Sbjct: 744 GYRFSKPVSPEEIPGLLRAR 763 Score = 55.3 bits (132), Expect = 6e-05, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 17/177 (9%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 AL IV + + + R V D ++ D Sbjct: 8 RWESTDALSAETRRIVAATEAMMASTAHHLSDGIENL-----RLKTIVHELPDFLYVKDR 62 Query: 424 VRDRVTTTPDIATILGLASGSMHG-----PIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 V A+ LGL S + + ++ +H D + + + Sbjct: 63 DSRFVFANTVTASSLGLESADLLTGKRDFDLFDFETALHHFDIE------QQIMATGQAC 116 Query: 479 LQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534 + E + + P+ N G+++ IG++ DITE+K+ + A Sbjct: 117 IDMEESYVLPGGKRPICRLTSKIPLRNDRGEVIGLIGVSRDITERKRQEDLHREQAN 173 >gi|309779436|ref|ZP_07674197.1| sensory box protein [Ralstonia sp. 5_7_47FAA] gi|308921677|gb|EFP67313.1| sensory box protein [Ralstonia sp. 5_7_47FAA] Length = 889 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 144/582 (24%), Positives = 269/582 (46%), Gaps = 16/582 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + +L + ++ L V + V ++ A IL ++ Sbjct: 310 IAALVKLLRLENEYRQSRELRDQYRLVVNHLSEGVLTLSTDGRVLSYNRSAAEILRMSGA 369 Query: 444 SMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRI 499 S G R L + + R S + R GR V A + Q W+ + Sbjct: 370 SWKGRPRVALNDMMLGEDGAILPRAAWPSTLAARTGRAISNVVVGVPAGNGQIVWLRESV 429 Query: 500 RPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 PM + + + I DIT ++ + E + +D+LTG+PNR +F++RL L L Sbjct: 430 LPMFSPDSASPHAVLVIFTDITAERSAYEQLRLLETKDSLTGLPNRAAFIERLDARLALP 489 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 +T ++ ++ I +D +K +N+ +G +G+ VL +RI +LARL G++F Sbjct: 490 STGES---ALLYIGLDHFKTVNEAMGHHMGNQVLNMAAQRIRGQAGQRALLARLGGDQFC 546 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 + + ++ A + ++A P ERE+ ++ASIG A++ ++ ++ +AE Sbjct: 547 VAI---DDPNAADTLAQQVLDALARPFTGGEREVHLSASIGVAAYPEDGGDAATLVSHAE 603 Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMY AK G N + + + + E + A+ ++ LVY P L E+V Sbjct: 604 AAMYRAKENGRNRITRYSRALETQMLRRFTLNERMRRALARGQVRLVYQPKYALDSGELV 663 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 +EAL+QW P+ G +S SEF+ +AEE I + + L + +W + + Sbjct: 664 AVEALMQWSDPELGAVSPSEFIDVAEESGYILELGRWALMQACAQGEAWARKFGFTG-RM 722 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++++ + + + + +P R++L +ESV++ + + ++ LL L G+ Sbjct: 723 AVNVSARQCDAGVIERDVDEALKASGMAPGRLELELTESVLLADRQSTQRLLMSLAARGV 782 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914 ++LDDFG S LSYL +P +K + S ++G +A+ ++II MA+ + T+ Sbjct: 783 RISLDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPGVPDCVALTKTIIAMARALNMTVT 842 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 A+ + LT CD +Q PL +++ +LL+ R Sbjct: 843 AEGVETPEQTAFLTAHACDEVQGFLFGRPLEVSALEELLRTR 884 >gi|325277590|ref|ZP_08143176.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51] gi|324097271|gb|EGB95531.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51] Length = 577 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 116/443 (26%), Positives = 211/443 (47%), Gaps = 7/443 (1%) Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + + A D LTG+PNR DR+ + A +M ID+D +K +ND G Sbjct: 137 ANQELTQLALHDTLTGLPNRTLLADRIEQAIARVAEQGGC-FALMFIDLDGFKPVNDAFG 195 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 +GD +L ++ R+ L D LAR+ G+ F +L+ D A+ ++ P Sbjct: 196 HHIGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVQLQEPDDAMDVAVKQVNLVSRP 254 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702 + E ++ ++AS+G + + E+L+NA+ AMYHAK G N F ++S Sbjct: 255 FRVAEHDLQLSASLGIVLYPGNGQDQHELLRNADAAMYHAKSAGKNGYRFFDVSMNSNAR 314 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ + +DL AV + L Y P + +G EAL++W+HP+ G + F+ +AE Sbjct: 315 QQLQLLQDLRQAVAQRQFRLHYQPKFDAQACQPIGAEALLRWEHPQQGLLMPDRFIALAE 374 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + +I I ++L R + W DQ + + +N+++ L + + + Sbjct: 375 KTGLIIPIGEWVLNEACRQMRLWLDQGHHQ-WRMAVNLSAIQFSHCGLVDSVAQALQHNG 433 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + + L +E+ M + + S +L RL +G+ L++DDFGT S L YL +P + +K Sbjct: 434 LPANCLTLEITETTAMHDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 493 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + AI+ +I+ + + + I+A+ + + LTR+GCD +Q + Sbjct: 494 IDRGFVRELEQDSDDAAIVSAIVALGQALGLRIVAEGVETDRQQAFLTRLGCDSLQGYLL 553 Query: 941 ASPLGFNSILKLLKERFPLVKNT 963 P+ L L+ P K+ Sbjct: 554 GQPVPAEQFLSKLQAMGPGAKSA 576 >gi|153836012|ref|ZP_01988679.1| ScrC [Vibrio parahaemolyticus AQ3810] gi|260901150|ref|ZP_05909545.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio parahaemolyticus AQ4037] gi|149750766|gb|EDM61511.1| ScrC [Vibrio parahaemolyticus AQ3810] gi|308109338|gb|EFO46878.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio parahaemolyticus AQ4037] Length = 774 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 9/442 (2%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I +K S + + A D LT +PNR +RL L ++ + + VM ID+D +K+ Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGS-KVLVMFIDLDHFKQ 391 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G VGD++L +R+ + + D+LAR+ G+ F +++ ++ A ++ Sbjct: 392 INDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 451 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + + P E +T S+G + + + ++L A++AMY K G + + + Sbjct: 452 SAFSEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 511 Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+ N L + Y PII L +IVG EAL++W+ K+G ++ E Sbjct: 512 MNQDLQRYLDLESRLRNAISNQLLEMYYQPIIELKSGKIVGAEALMRWNDEKFGFVNPEE 571 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815 F+ IAE+ +I + F +++ W+ P+F+ +N +S + L ++ Sbjct: 572 FISIAEKNGLIHQLGEFAIQQACHQASQWQSI---SPLFVSVNFSSVQFRYCDRLLAFIR 628 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ + + +ES++ + + +L LR +G LT+DDFGT S LSYL Sbjct: 629 QSLEESGLPAEQFDVEVTESLLFNHDDELVDMLDNLRALGTKLTIDDFGTGYSALSYLQK 688 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S M + ++ II MAK + I+A+ I + + L + C+ Sbjct: 689 FPFDRLKIDRSFMQNVFENDSDRELVNVIIAMAKALRLKIVAEGIEEQRHVDYLNELNCE 748 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 + Q H + P+ +LL + Sbjct: 749 FGQGFHYSRPVPAKEFEQLLNQ 770 >gi|313682488|ref|YP_004060226.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM 16994] gi|313155348|gb|ADR34026.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM 16994] Length = 561 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 133/552 (24%), Positives = 261/552 (47%), Gaps = 18/552 (3%) Query: 405 ERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463 E V +G +V+ D+ + + ++ G G + + + Sbjct: 11 EPMEAIVNNTGALVYVIDLSSYEILYANKQCKSLFGDIEGKACYSVLQNGQNVPCDFCPM 70 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY-IGIANDITEQ 522 + +D ++E + + +++ RI + NG + + IGI DIT+Q Sbjct: 71 QQQPIDPLSLPVGTYFEWENQN-TRNGRYYLYNDRI--IRWKNGQLAKVQIGI--DITDQ 125 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 KK + D LT +PNR F L+ ++ + + ++ ID+D +K IN+ Sbjct: 126 KKLELDLKNLTHYDTLTNLPNRLLFTVHLSNMIHHTYRSKHY-AAILFIDLDHFKTINNT 184 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFAIAM 637 G +VGD +LV +RI +++ D +AR G+ F +++ + + A + Sbjct: 185 KGHSVGDQILVETAKRIFNIVRQCDTVARFGGDEFVVLINTNKDDKIQATADAQFVAEKI 244 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697 + P + + + +ASIG A +T + + ++LK A+ AM++AK G N F Sbjct: 245 LAELEKPFYIDDFDFRTSASIGIAMFTDLEHSIDDLLKYADSAMHNAKTSGRNTFRFFDP 304 Query: 698 SSFRSDRVM--IKEDLCLAVENSELYL-VYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + + L A+EN+ + L + I+ + +VG+EAL++W+ P+ G IS Sbjct: 305 LLQKMMEDRACMLDRLRKAIENNFMALHYQNQILVNRHQHVVGVEALLRWNDPEHGMISP 364 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE +I + +++ + + W D I +N++ K ++ M Sbjct: 365 GEFIPLAEESGLIIPLGEWIMREAVKQLKIWEDDPVKKDWRISVNVSYKQFEKDDFVSLM 424 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++++ + + +R++L +ES+++ N E + + +L+ +GISL++DDFGT S LSYL Sbjct: 425 ESILQEYPTAANRLRLELTESLLIKNTEEALHKIRQLKVLGISLSIDDFGTGYSSLSYLK 484 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 +P D +K + S + + I+ +II + + +IA+ + E ++L MGC Sbjct: 485 QLPIDELKIDQSFIRELTTNRNDVIIVETIISIGQKFGFEVIAEGVETEEQYQKLVLMGC 544 Query: 933 DYIQDSHVASPL 944 +Y Q P+ Sbjct: 545 EYFQGYLFGKPI 556 >gi|90023471|ref|YP_529298.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] gi|89953071|gb|ABD83086.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] Length = 682 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 113/436 (25%), Positives = 225/436 (51%), Gaps = 6/436 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E +K E AF DNLTG+PNR +R ++ + N ++ +D+D +K IN Sbjct: 234 ELEKLAEEFRFRAFHDNLTGLPNRALLNERFGLCIEHARRCGNKFVCLL-LDLDDFKTIN 292 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D G GD++L+ + +R+ ++ D++ RL G+ F I+ A + + Sbjct: 293 DTKGHDYGDELLIGVAQRLKASVRAEDLVCRLGGDEFIILATDIETEFDARQIANNILFA 352 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 ++ I + + +I SIG A + T + ++A++AMYHAK G N F Sbjct: 353 LSEDIVIKDDKIKTAVSIGGAIYPQHGETVGVLKRHADVAMYHAKDGGKNRFSLFSHGMQ 412 Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+MI+ DL A+ +++L + + P + E+ G EAL++W HP+ G ++ +F+ Sbjct: 413 EEVHYRLMIQRDLEPAILDNQLIIYFQPKVLAETGEVAGCEALVRWQHPEEGFLTPDKFI 472 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 AEE +I+ I+ +++ + + W + P+ I +N++ + ++ E ++ + Sbjct: 473 PYAEETPLIREIDYYVIRECCKKLKEWAARF-DKPVPIAVNLSGRHFRSFKIVEVLKEAV 531 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + SP +++ +E+V++ +P++++ ++ ++ IG +++LDDFGT S L+YL +P Sbjct: 532 ASAGISPDLLEIEITEAVLIADPDKAQKVVHAIKSIGFTISLDDFGTGYSSLNYLRTLPI 591 Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S + E+ + R I +AK ++ T++A+ + E ++ L +GC Q Sbjct: 592 DIIKLDRSFIANIDTSEQDRRLTRGITSLAKGLDLTMVAEGVETESQLQTLLDLGCHCFQ 651 Query: 937 DSHVASPLGFNSILKL 952 + + P+ L Sbjct: 652 GYYFSKPVPETEFLAW 667 >gi|304309705|ref|YP_003809303.1| PAS/GGDEF domain protein [gamma proteobacterium HdN1] gi|301795438|emb|CBL43636.1| PAS/GGDEF domain protein [gamma proteobacterium HdN1] Length = 708 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 139/587 (23%), Positives = 264/587 (44%), Gaps = 21/587 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++G + + L + ++ D + + + G Sbjct: 119 VVGLIGVSIDASNRAPHSAALEQNRLLDLFLNHIDAHIFQKDANGRFLYANRPVVRLYGR 178 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G L + + D + + +R AD Sbjct: 179 TEAEILGHTD--LELL-PEEIARALMATDQEILQSGQPRACQEAIRGADGVLRHFWSSKL 235 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 P+ N G +G+A DI+E + E + D LTG+ NR F RL L Sbjct: 236 PLLNP-GQPPTLVGVATDISELLELQERLHRQQTTDELTGLANRSLFESRLQQALTA--- 291 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP---DILARLSGNRF 617 ++ V+++D+D +K IN G A GD +L + R+ + + +AR NR+ Sbjct: 292 -EDTTWAVILLDLDDFKYINSAHGQATGDTLLRQVALRLEQCPAAQQLRNTIARFGANRY 350 Query: 618 GIIL--ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 ++L + ++ ++A A + +++A+P+ + E+ +TASIG + + ++L Sbjct: 351 ALLLEIPNADSGAQVAQMASCLTQTLALPLQIGEQLFHLTASIGVSLYPLDSQAQQQLLS 410 Query: 676 NAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAV--ENSELYLVYHPIIRLM 731 +AE A+Y AK G N V + +R ++ L A+ + L Y P I+L+ Sbjct: 411 HAEAALYQAKALGRNQVCFYSPELGQRVQERAHLEHALRAAIVEPDQAFELHYQPKIQLL 470 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + VG+EAL++W P+ G +S +F+ +AE+L +I A+ + + R + +WR + Sbjct: 471 SGQAVGVEALLRWPRPE-GMVSPLQFIPLAEQLGLINALGGWAITTACRQLAAWRGTSLD 529 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + I +N+++ L D++L + + + ++L +ES++M NPER+ L +L Sbjct: 530 -GLKIAVNLSAHQLRDDKLVSFIADQLQRYGVPAKSLELEVTESLMMDNPERAIAYLHQL 588 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNI 909 R +G+SL +DDFGT S SYL +P D +K + + +T + + +I +AK + Sbjct: 589 RALGVSLAIDDFGTGFSSFSYLKQLPVDCLKLDKAFITNIAKDAREADLCAGLIMLAKRM 648 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 T++A+ + E ++ L +M C+ IQ + PL + L+ R Sbjct: 649 GLTVVAEGVEEEAQLELLRQMDCELIQGYFYSKPLSIRPLEDYLRGR 695 >gi|322419628|ref|YP_004198851.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geobacter sp. M18] gi|320126015|gb|ADW13575.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter sp. M18] Length = 705 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 121/583 (20%), Positives = 245/583 (42%), Gaps = 21/583 (3%) Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDI 434 + ++ + + + +R S + D++ + V Sbjct: 120 LFRILDRVGEKLTLRRLVARQVAALRASEQRFSTIFQATPDLLSIASLQDGRLVEVNEAF 179 Query: 435 ATILGLASGSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490 LG + G WL L + + E R++A + Sbjct: 180 LRALGFDRQEVIGRTPEELGLWLDAGEP-------AALLQALAEKGAVRDLEVRLKAKNG 232 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 Q ++ + G+ + + DI+E+K+ + I A D LT +PNR+ F+D Sbjct: 233 QELEGLVSADSIEME-GNP-FLLTLFKDISERKRLEQIIKHQAQHDPLTDLPNRKLFMDF 290 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L + + V+ +D+D +K+IND LG A GD +L ++ +R+ ++ D +A Sbjct: 291 LALELAQARRNKK-SLAVLFLDLDHFKQINDTLGHAAGDLLLQAVAQRLKRCVRESDTVA 349 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 R+ G+ F +++ + + + P L E+ + S+G + + + Sbjct: 350 RIGGDEFNVLMPDLAQTDDVGTVVSKIMGVFGPPFRLEGIEVQASTSLGVSMFPDDGESC 409 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPII 728 E+L+ A+ AMY AK GN + + R ++ L AV EL LVY P++ Sbjct: 410 EELLQKADGAMYVAKQSDGNSYQFYNDEINARTVSRQNMEMRLRQAVSRGELELVYQPLL 469 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 L I EAL++W HP+ G + ++F+ +AEE I I +++ + + W++Q Sbjct: 470 NLGTGRISAAEALLRWHHPERGLLFPAQFLTVAEETGAIVPIGEWVIHQACTQMKEWQEQ 529 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + + +N+++++ E +S+T +P +++ E +M N + Sbjct: 530 GLD--LSLAVNLSNREFHHPNFLEMTMTALSETGLAPGSLEMDIPERAIMDNASLPVKDM 587 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906 RL + G++ ++DDFG S L + +P +K + S + + ++ ++I M+ Sbjct: 588 LRLTEAGVAFSVDDFGIGSSSLQRIRQLPIAKLKIDRSFIRDILTEPGDLDVVSAMICMS 647 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 +++ + A + + + GCD +Q + PL Sbjct: 648 HSLKLRVNAVGVEAPGQLALMEDYGCDEVQGDLIGRPLPAAEF 690 >gi|169632940|ref|YP_001706676.1| hypothetical protein ABSDF1184 [Acinetobacter baumannii SDF] gi|169151732|emb|CAP00534.1| conserved hypothetical protein; putative membrane protein [Acinetobacter baumannii] Length = 949 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 131/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%) Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 ++ V T Q D E L + + + ++ D + + P + G + Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499 + + ++ + + + G +F + + ++ + I Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + I+ YIG A D+TEQK+ + + D+LT +PNR + ++L L + Sbjct: 490 NAVKDEYNQIINYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ I+ID+++ N+ L GD++L +R+ ++A L+G+ F I Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 I I + + +++ P + E+E +TASIG A + + +AE Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 A+ AK GGN + + + + ++++L A++N E + Y P I L D+ I G Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EALI+W HP+ G + + F+ AE +I I +L+++ + + W+ + + + Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 NI ++ + L + ++ S ++L +ES ++ N + + LL +++ IS+ Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917 LDDFGT S L+YL P D +K + + ++ +++ AI+ ++I M K++ ++A+ Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDQAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 + E + L + CD++Q + PL N IL+ L+ Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944 Score = 91.9 bits (227), Expect = 5e-16, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 97/333 (29%), Gaps = 40/333 (12%) Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW 278 + + + I+ L + + + ++S+ II L R+ Sbjct: 89 LVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRY 148 Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + + + + + ++ T Y + Y++ Sbjct: 149 F-------YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKIS 201 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398 L+ + + L L V Q Q Sbjct: 202 QLL----------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ 251 Query: 399 GIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 + ER + A +G WDWDI + ++ T + Sbjct: 252 KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQT 306 Query: 445 MHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 + P+ ++ L IH NDR F L + + FR+ + + W+ R + Sbjct: 307 QNTPLHLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVI 366 Query: 503 SNS--NGDILRYIGIANDITEQKKSLEGILCNA 533 S LR +G+ DI ++KK E + +A Sbjct: 367 SRDPKTNKALRMVGMTRDIHQEKKDQEHLRLSA 399 >gi|28901366|ref|NP_801021.1| sensory box/GGDEF family protein SrcC [Vibrio parahaemolyticus RIMD 2210633] gi|260362921|ref|ZP_05775790.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio parahaemolyticus K5030] gi|260880208|ref|ZP_05892563.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus AN-5034] gi|260895325|ref|ZP_05903821.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus Peru-466] gi|28809913|dbj|BAC62854.1| ScrC (sensory box/GGDEF family protein) (involved in swarmer cell regulation) [Vibrio parahaemolyticus RIMD 2210633] gi|308085558|gb|EFO35253.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus Peru-466] gi|308091669|gb|EFO41364.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus AN-5034] gi|308111922|gb|EFO49462.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio parahaemolyticus K5030] Length = 774 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 9/442 (2%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I +K S + + A D LT +PNR +RL L ++ + + VM ID+D +K+ Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGS-KVLVMFIDLDHFKQ 391 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G VGD++L +R+ + + D+LAR+ G+ F +++ ++ A ++ Sbjct: 392 INDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 451 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + + P E +T S+G + + + ++L A++AMY K G + + + Sbjct: 452 SAFSEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 511 Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+ N L + Y PII L +IVG EAL++W+ K+G ++ E Sbjct: 512 MNQDLQRYLDLESRLRNAISNQLLEMYYQPIIELKSGKIVGAEALMRWNDEKFGFVNPEE 571 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815 F+ IAE+ +I + F +++ W+ P+F+ +N +S + L ++ Sbjct: 572 FISIAEKNGLIHQLGEFAIQQACHQASQWQSI---SPLFVSVNFSSVQFRYCDRLLAFIR 628 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ + + +ES++ + + +L LR +G LT+DDFGT S LSYL Sbjct: 629 QSLEESGLPAEQFDVEVTESLLFNHDDELVDMLDNLRALGTKLTIDDFGTGYSALSYLQK 688 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S M + ++ II MAK + I+A+ I + + L + C+ Sbjct: 689 FPFDRLKIDRSFMQNVFENDSDRELVNVIIAMAKALRLKIVAEGIEEQRHVDYLNELNCE 748 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 + Q H + P+ +LL + Sbjct: 749 FGQGFHYSRPVPAKEFEQLLNQ 770 >gi|260775416|ref|ZP_05884313.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC BAA-450] gi|260608597|gb|EEX34762.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC BAA-450] Length = 648 Score = 469 bits (1206), Expect = e-129, Method: Composition-based stats. Identities = 129/544 (23%), Positives = 244/544 (44%), Gaps = 35/544 (6%) Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD----------SFVGYRR 476 ++ P +LG S + L + ++++ + + R Sbjct: 121 IISANPAAVRLLGFEDNS--DLLGEELSRLFVDEKTKTVFSKSLSSSLAKAPLTCLTGPR 178 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + ++ A D ++ + +++ K L +A D Sbjct: 179 CGFERRVQLHADDAMVLGCNTQLVLIQDADETP-------------KHLSNKPLEDAHID 225 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +LTG+ NR F RL + + ++ +DID +K IND LG +GD V+ ++ Sbjct: 226 SLTGLYNRFGFTKRLEQFI-----HNETPLLLLYLDIDNFKNINDSLGHHIGDKVIKEVS 280 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 R+ LL ++ L G+ FG+IL N+ A + I P +L + Sbjct: 281 SRLKRLLPQHAVVGHLGGDEFGLILPEPENNRMAEILAERIISLINQPFDLHHFSKRLAC 340 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714 SIG ++ + +L+NA+ AMY AK RG N + F +++ R+ ++ +L A Sbjct: 341 SIGSVTYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKA 400 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 ++ + L + Y P + D I G EALI+W HP G IS F+ +AE +I+ + + Sbjct: 401 LQQNGLEVWYQPKVNARDFSINGAEALIRWKHPVEGYISPGAFIPVAERAGLIEHLGRVV 460 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 + + + W + P + IN++ + + +L + M+ L+ T P+ I +E Sbjct: 461 MREVFSTVKRW-KLQGILPGRVAINLSPEQFGNPKLIDYMEKLLRTTELDPNCITFELTE 519 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-- 892 S VM + E + +L ++K+G +L++DDFGT S LSYL P D +K + + + Sbjct: 520 SAVMSDSEHTLQMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFINDIDTL 579 Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 K++ ++ +II + K++ T++A+ + + L+ + C+ IQ H P + +L Sbjct: 580 PKQVTVIENIINLGKSLNLTVVAEGVETQQQATLLSNLNCNSIQGFHFYRPQPKQEVEEL 639 Query: 953 LKER 956 + Sbjct: 640 FAQH 643 >gi|315127655|ref|YP_004069658.1| sensory box protein [Pseudoalteromonas sp. SM9913] gi|315016169|gb|ADT69507.1| sensory box protein [Pseudoalteromonas sp. SM9913] Length = 1501 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 123/564 (21%), Positives = 243/564 (43%), Gaps = 16/564 (2%) Query: 397 SQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-LP 454 + +F + R + A + D V+ D + + + + GL++ N + Sbjct: 938 RERVFEEHARLFTAAFEQTRDWVFILDKNFNIRASNKSLQSAFGLSAEPRSTRALNLGMS 997 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D L+ E V A+ + ++++I +++ + + ++ Sbjct: 998 RSSYFDYLRIMQKLEV-----GEHFSCEDTVVLANKEQRHVLVKISAVADESQRLSSFVI 1052 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I DI QK + + A D+LTG+PNR F DR +D + + ++ ++I Sbjct: 1053 ILTDIHAQKSAESELHILANYDSLTGLPNRTLFNDRAIHAIDQARRHQ-CKVALLHVNIK 1111 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 ++K ND G D+++ + R+ L+ D +ARL G+ F I++ ++ Sbjct: 1112 RFKYFNDSFGTENADEIIKLVANRLKTALRPCDSVARLGGDEFVILVEDIQQIEEVLLIC 1171 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHV 692 + ++ I + ++ + V SIG A + +LK + +A+Y+AK G Sbjct: 1172 TKLMDCVSKDIVMNQQSVNVHLSIGVAIFPDDAAHYKALLKASNVALYYAKDGLEGCYKF 1231 Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 ++ + ++ L A E Y PII ++ VG E L++W P Sbjct: 1232 YKQEMNQRVERAMHLESQLIKAYHEHEFCNYYQPIINASTQKTVGFEVLLRW--PDNQLA 1289 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 S+ EF +AE + +I I L +R + WR P +++ IN+++ D L Sbjct: 1290 STQEFANVAENIGLITKIMLQTFKRALVQLARWRKVC--PDLYLSINLSALDFEFIGLVP 1347 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 ++ ++ P I +ES++M + E + + L+++G L +DDFGT + L+Y Sbjct: 1348 EIRQALNNAALPPEAIVFEITESILMRDSEHALKNMDLLKQLGCKLYMDDFGTGYASLTY 1407 Query: 873 LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 L P D +K + S + AI++S + +A ++ IA+ + + L Sbjct: 1408 LKRFPIDVLKIDRSFVQDIGIDSDNEAIIQSTLTLASSLGKECIAEGVESAHQLAFLKAQ 1467 Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954 GC Y Q + + +L+L++ Sbjct: 1468 GCSYFQGYLFSKAVPKEQVLELIE 1491 Score = 99.6 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 6/180 (3%) Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH---VLATGYFSQGIFSDGERQSLA 410 + I R L +L++ ++ V++ + R LA Sbjct: 771 ATLNIKVRYPLWRAPYFLALYTILLITIVTAWVMRRNKIQRILLAAHKESQDSEARLKLA 830 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + GS VWDW + + P + LG S+ + ++L IH +R FR Sbjct: 831 LEGSESGVWDWQASQLNIYQ-PRLVNELGYEDDSV--SLDDYLEKIHPQERAIFRLEWLE 887 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 F+ +G +R+R A + W + + + G ++T ++ E Sbjct: 888 FLSTDKGYFNCTYRLRHAKGHWRWYKDFGKVVEWDKKTPQKVAGTYTNMTRERVFEEHAR 947 >gi|71278228|ref|YP_271298.1| sensory box protein [Colwellia psychrerythraea 34H] gi|71143968|gb|AAZ24441.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H] Length = 762 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 137/479 (28%), Positives = 236/479 (49%), Gaps = 29/479 (6%) Query: 501 PMSNSNGDILRYIGIAND----------------------ITEQKKSLEGILCNAFQDNL 538 P+ +S+G +L G+ +D + E++++ + I A+ D L Sbjct: 280 PIKSSSGKVLGAFGMYHDYPALPNEQESNDLTSAARLAGIVMEREQNQKRIQNLAYTDEL 339 Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598 T + +R F + ++ +SA + N + ++ ID+D +K +ND LG VGD +L + +R Sbjct: 340 TKLSSRPHFYINIEELVKISAREKN-KFGLLYIDLDNFKTVNDSLGHDVGDLLLKKVAQR 398 Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658 + + D +ARLSG+ F I + + + A A + I+ P+ L R+ T SI Sbjct: 399 LKSACREIDYIARLSGDEFCIAVNNVMDDYGAAHVAQRCLELISKPVELAGRKFTPACSI 458 Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVE 716 G A + I +LK A+ A+Y AK G N ++ R I++ L A+E Sbjct: 459 GIAHYPDDGIDLQTILKAADTALYAAKDLGKNRFAFYKKELTDKAEYRFKIEQHLREAIE 518 Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776 +L LVY P + + I+G+EAL +W+HP G +S +F+ +AE++ MIK + ++L+ Sbjct: 519 QQQLSLVYQPKVDIKSGNIIGVEALSRWNHPLLGQVSPVDFISMAEQIGMIKPLTEWVLK 578 Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 W++ I I +NI+ LD++L ++ +I +T P ++L +E V Sbjct: 579 TACNQATLWKEA-GFSSIIIAVNISPSHFLDSDLVPLIKRVIKETGMLPGDLELEVTEGV 637 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 + NPE + L+++GI L +DDFG S + L ++ D +K + + K Sbjct: 638 IQTNPENL-AVFEHLKELGILLAIDDFGVGYSSFASLKHLNVDYLKIDKYFIDDILVDHK 696 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ S+I M N+E I A+ I E L +GCDY Q + P+ N I KLL Sbjct: 697 AKLLVGSMIEMGHNLEHKITAEGIESEEQATMLQELGCDYAQGYFFSKPVSANQISKLL 755 Score = 138 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 + + + ER +LA+ G+ D +WDWD+ D V +P ++LG + + + W + Sbjct: 33 TAELLNSEERFALAMRGASDGLWDWDLATDDVYYSPRWKSMLGYSEHELENTLSTWAAMV 92 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI-RPMSNSNGDILRYIGI 515 H++D+D + F+ + E R+R ++ R + N + +R IG Sbjct: 93 HVDDKDFVLKNVHKFLSGEVDTFEVEMRMRHKVGHDVFIRSRAFKVTRGENNETIRLIGT 152 Query: 516 ANDITEQKK 524 DIT+QKK Sbjct: 153 HVDITQQKK 161 >gi|34498882|ref|NP_903097.1| hypothetical protein CV_3427 [Chromobacterium violaceum ATCC 12472] gi|34104733|gb|AAQ61090.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 662 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 128/551 (23%), Positives = 255/551 (46%), Gaps = 20/551 (3%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNF 464 R + A+L + ++ +D + P + + W + +H ND Sbjct: 128 RSTEALLHTSVLITLYDGNGGALYRNPA-------SRERVAVAGEGWRQHFVHDNDWQQL 180 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 R + + G + RV + W + R ++ + DIT+ K Sbjct: 181 RQGVAAC-----GEARLLARVNTREG-MRWHEVAARACRDAVTGQDALLVSEVDITDLKH 234 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + A D LTG+PNR L L + + + +M ID+D++K +ND LG Sbjct: 235 AEARASFLANHDVLTGLPNRNGIRSELLPHLQQALRNGR-QVALMFIDLDRFKNVNDSLG 293 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 A GD++L+ + R+ LL + ARL G+ F ++L + + + A + +++++P Sbjct: 294 HACGDELLIRMAGRLVGLLGHDEKAARLGGDEFLVMLSAPQVAERAEALARRILQALSVP 353 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702 + L ++ V+ASIG + ++ +M+++A+LAMY AK G N++ F + Sbjct: 354 MRLEGMDVGVSASIGISVCEGRELDLEQMMRHADLAMYAAKDAGRNNLMFFTPALEARSQ 413 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ ++ D+ ++ E + P + + +VG EAL +W HP+ G + F+ + E Sbjct: 414 AQLALENDIRRGLDCGEFIAYFQPRVDIASGRVVGAEALARWRHPQRGLLMPDSFIPMCE 473 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + M+ + +L + AR WRD+ + + +N+++ +D L ++ +++ + Sbjct: 474 DCGMVMELGRQILLQAARQQRQWRDRGLD--LLVSVNLSACQFVDPGLPGQVEQILADSG 531 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P R++L +ESV++G+ E++ L +R +G+ + +DDFGT S L+YL P ++K Sbjct: 532 CQPDRLELEITESVLLGHDEQTMSTLQAMRALGVRIAVDDFGTGYSNLAYLQRYPLTSLK 591 Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + S + + AI I + + + ++A+ + E + L GC Q + Sbjct: 592 IDRSFIADLD-DKPAIAELITTLCRMMGLNMVAEGVETEAQLAWLAERGCQEYQGYLCSP 650 Query: 943 PLGFNSILKLL 953 L + L Sbjct: 651 ALSAQEFQQRL 661 >gi|51891865|ref|YP_074556.1| hypothetical protein STH727 [Symbiobacterium thermophilum IAM 14863] gi|51855554|dbj|BAD39712.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 1016 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 137/668 (20%), Positives = 272/668 (40%), Gaps = 15/668 (2%) Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346 ++ + + + ++ + S++ ++ L G+ L Sbjct: 352 YAMLGAMLGVLSLAQILLPGSMSVSLPFGIAVGLMIIVLGAAWVHAGHAHRSLYRQLTET 411 Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406 + + + AL ++ +++ +A + ER Sbjct: 412 SQTLVQNNRVLQAANEELAAQREALAAQQDELLRQHRI-LVEQAMALSAQRDELLESEER 470 Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 A + V D+ + P + +LG G + G H +D + + Sbjct: 471 FRTAFEYAPIGVALVDLDFVIMRANPALHDMLGYRRGDLTGVP--LRQITHRDDLEEQES 528 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 +L++ + G E R D + W+ + + + +++G ++ D+T+++++ Sbjct: 529 LLNAVRAGQAGSCAMEKRYLRHDGRAVWVAVSVALVRDAHGTPRYFVAQVMDVTDRRQAE 588 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 E + A D LT + NR+ F +L LD AT R + +D D +K +ND LG Sbjct: 589 EQLRRLAHFDPLTDLGNRRYFQRKLEAALDDPAT---PRGALFFLDFDDFKFVNDTLGHL 645 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GDD+L +L R + E L +ARL G+ FGI++ ++ A + ++ I Sbjct: 646 AGDDLLKNLARVMTETLGGRGFMARLGGDEFGILVPGV-DASGAEALAQDLLAAVRSQIA 704 Query: 647 LLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF---RVSSFRS 702 VT S+G A + T+ ++ +A+LAMY AKH GG+ + + Sbjct: 705 ANPACPTYVTISVGIALYPDHGHTAETLMLHADLAMYQAKHSGGDRYCMYVAFEPLNGDE 764 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + L A+ LV+ PI+ L E+ EAL++ P I EF+ A Sbjct: 765 AGSAWEIRLRAALAEDRFTLVFQPILDLQLGEVTQYEALLRMVEPDGRQIPPGEFLPAAA 824 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 ++ I+ +++ R I + + + + +N++ + L D L ++ LI + Sbjct: 825 SCGLMPEIDRWVVRRAVETIAREQARGRR--LTLSVNLSGQALNDPSLVPLVRDLIDRHQ 882 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P ++ +ES + + +++ + L +G LDDFG S L YL +P T+K Sbjct: 883 IPPGSLRFEVTESAAVTDLDQAAACIEALTDLGCEFALDDFGVGFSSLRYLKRLPVRTLK 942 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 +G + +++RS++ MA+ + +A+ + + ++ L R G D Q +V Sbjct: 943 IDGGFIERLPDDPVDQSLVRSMVTMARGLGVRTVAEYVTSDRALEMLRRCGVDAAQGYYV 1002 Query: 941 ASPLGFNS 948 P Sbjct: 1003 GPPGPLPE 1010 >gi|27381656|ref|NP_773185.1| hypothetical protein bll6545 [Bradyrhizobium japonicum USDA 110] gi|27354825|dbj|BAC51810.1| bll6545 [Bradyrhizobium japonicum USDA 110] Length = 892 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 121/447 (27%), Positives = 218/447 (48%), Gaps = 8/447 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K++ I A+ D LTG+PNR ++ +D T + +D+D +K +N Sbjct: 431 ERKEARAEIARLAYHDILTGLPNRAQLRHLISAAIDACPT--GSHVALAFLDVDHFKDVN 488 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG A GD++L+ L +R+ E + DIL RL G+ F ++L ++ A + ++ Sbjct: 489 DTLGHAAGDELLIQLAQRLREQIGPEDILGRLGGDEFVVLLPH-RDAEGAERVATGITEA 547 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +A P+ L R++ ++ASIG + + +++ A+ AMY AK G + F Sbjct: 548 LAAPLRLGSRQMQMSASIGISLYPDHATDIDTLMQQADAAMYMAKQAGRSTHRLFSAEMN 607 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ + L A+ EL L Y P IR D I GLEAL +W + G++S ++F+ Sbjct: 608 GLTEQRLALIAALRRAIAEGELTLSYQPQIRSCDGAIHGLEALARWHDAELGDVSPAKFI 667 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I+ I L+ + R + SWR P + +N++ + + L + ++ Sbjct: 668 PLAEECGLIEQIGLWSVREACRQMASWRRAGLSIPC-VSVNLSPINFRNVTLAARLADIL 726 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 ++ P + L +E M + + + +R++G+ L++DDFGT S LS L ++P Sbjct: 727 AEYGLPPDALMLEITEGAFMQDSVAALETMNAIRELGVGLSVDDFGTGYSSLSRLAHLPI 786 Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + S M +AI +++ + + + T++A+ + E K L +GCD +Q Sbjct: 787 RELKIDRSFMRDIETDAGALAIATAVVRVGQGLGMTVVAEGVETEAQRKLLADLGCDVVQ 846 Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963 A L + + L E Sbjct: 847 GFLYAPALPPVAFERWLIEHCAEQARA 873 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 7/155 (4%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAV-----LGSGDIVWDWDIVRDRVTTT 431 + I + I + F++ + ++ ER+ +A+ + +V D ++ V Sbjct: 121 VAITLSSATIDGAVHRIVFARDVTAEAERRARIALLHAVSDQTNRVVIITDTEQNIVYVN 180 Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491 ++ G S G L DR ++ + R R + E D + Sbjct: 181 SAFTSLFGYTSEEAEGRRAGELIAGRHTDRKTVAKLVKRLMHGDR-RGEAEVLAYDKDGE 239 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 W+ RI + + G + + DITE K+ Sbjct: 240 EIWVCARIDALRDKKGRVKHIFALLEDITETKQLR 274 Score = 40.7 bits (94), Expect = 1.4, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 15/128 (11%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464 + A+ + D V D + + I L+ + G RD Sbjct: 44 QLLLAALERADDGVVIVDDAQRIIHFNTAAERIWKLSRTEVLG-------------RDAA 90 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 L + E + D + I + + +G + R + A D+T + + Sbjct: 91 VLTLKCLQADAVTDFRDEISLMRRDGSRIKVAITLSS-ATIDGAVHRIV-FARDVTAEAE 148 Query: 525 SLEGILCN 532 I Sbjct: 149 RRARIALL 156 >gi|225850185|ref|YP_002730419.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Persephonella marina EX-H1] gi|225645147|gb|ACO03333.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Persephonella marina EX-H1] Length = 654 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 131/586 (22%), Positives = 256/586 (43%), Gaps = 21/586 (3%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTP 432 V + + + D + + S + + + + Sbjct: 80 FAVFVFPVIDKLKNRLLVFLVEATQKDIQEMRELLNTLIEKSPAGSFIY--RETFIFSNR 137 Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF-RVRAADNQ 491 I G + + IR W +H R++ ++ + + Y+ + + D + Sbjct: 138 TFQEITGFSEEELK-KIRPW-EIVHPKFREDVIKTINDRLSGKMMDKHYDLLTIISKDGK 195 Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 + + + G G+ D TE+ + + + D LTG+PNR+ F++ L Sbjct: 196 EKHLELITTTIK-YQGKYAGM-GVCVDRTEKVELEKRLNYLYSHDELTGLPNRKKFIENL 253 Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611 LD + +++L V++IDI +K IN G GD VL+S+++++ EL+ D +AR Sbjct: 254 KKALDYARKNNHL-VAVILIDIKDFKIINKQYGYETGDKVLISISKKLEELMTDVDSVAR 312 Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671 + ++FGI+L + + K+ + S+ ++ +I V +G + + + Sbjct: 313 VGDDKFGILLYAFRSFEKLTGKIEDVFNSVEGEYSINGFKIFVEIKMGVSVFPKDGVYPD 372 Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIR 729 ++ KNAE+A+ AK G E F + + + +KE + +E + + + Y PII Sbjct: 373 DLYKNAEIALLKAKRTPGKSFEFFSKNIYSEITRILNLKEKIRKVIEENNILIYYQPIIN 432 Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789 L EI LEAL + + I + + +AEE +I + +L + + + Sbjct: 433 LKTGEIDSLEALFRLNDGNETVILPKDIIPVAEETGLIVELGERILNSVLKF-----SKK 487 Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 I + +NI+S L + + P RI + +E+ +M + + L Sbjct: 488 VPQNIKLSVNISSIQLNKPMFDRDFLLSLENSDIPPDRIVIELTETAIMDSVSENITKLR 547 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907 L++ GI + +DDFGT S L+YL +P D +K + S + G I+++II MAK Sbjct: 548 NLKEKGIKIAIDDFGTGYSSLNYLKILPVDFLKIDRSFVKGIGRDRNDEMIVKTIISMAK 607 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 ++ IA+ + E ++ L GCDY Q + P+ + I++++ Sbjct: 608 SMNLKTIAEGVETEEQLRFLIENGCDYGQGYYFGKPVPEDKIMEVI 653 >gi|327439971|dbj|BAK16336.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Solibacillus silvestris StLB046] Length = 608 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 134/617 (21%), Positives = 277/617 (44%), Gaps = 24/617 (3%) Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 W L + + + ++ Q + +V +IG+ + H+ + + + Sbjct: 4 TWRLALTAILIISN-FFIFSNLELSQNITLSIIVFGANVIGWMLGNHLDKYVSSKKELGT 62 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + A+ + + + + G +W + Sbjct: 63 TLVDYTFALDFVTLGIGITNEKGEFEFVNKAHQDLYGYNLKEFLTK--SWKDCYSPEMAE 120 Query: 463 NFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520 + + + R G+ + + + D + I + S + I + DIT Sbjct: 121 HLN---NQAITQLRIYGKWKGKAKGIRKDGSIFPQELLISNIEGSK----KMICVVRDIT 173 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 EQ++ L I A ++LT +PNR+ L +++ +++ ID+D++K +N Sbjct: 174 EQQQYLNYIEHIAEHNDLTKLPNRRKLLSDFDKT-----KKESVDTSILFIDLDRFKIVN 228 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG GD +L+S+ R+ + + L G+ F +I+ + AI + Sbjct: 229 DTLGHNYGDKLLISVAERLISIQNEYIKIYHLGGDEFIVIVQNV-EYDYTEFIAIEIINI 287 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P + E+E+++T SIG S + ++++ A++AMYHAK G N + F Sbjct: 288 LKKPYLIFEKEVSITCSIGICSKSEHGYNYEKLIELADIAMYHAKMEGKNTYKFFNEDIR 347 Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + + +L A+ N E ++ Y P L D ++GLEAL++W++P G +S +EF+ Sbjct: 348 KQLERNLLIENELRRAISNGEFFINYQPKCNLADSSLIGLEALVRWNNPLLGIVSPAEFI 407 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 IAEE +I I +++ + + W+ P I +N++ + +NEL + ++ + Sbjct: 408 PIAEETGLINDIGNWVINAVLYQLHQWQSS-GYPLAKISVNVSQRQFKENELVDYIEKCL 466 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + P ++ +ES ++ + + L L+ +G+ +++DDFGT S L+++ +P Sbjct: 467 TTYNIEPQYFEIEITES-LIADFDLIIPQLTSLKNMGVGISIDDFGTGYSSLNFINLLPV 525 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 DT+K + S + G K ++++II + N++ ++A+ I E +KEL + C + Q Sbjct: 526 DTLKIDQSFIRGLLSNRKNNLLVKTIIDIGNNLQLKVVAEGIETEEQLKELINLNCHFGQ 585 Query: 937 DSHVASPLGFNSILKLL 953 + PL + I +L Sbjct: 586 GYLFSKPLAADKIESIL 602 >gi|90022956|ref|YP_528783.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] gi|89952556|gb|ABD82571.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans 2-40] Length = 581 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 130/423 (30%), Positives = 219/423 (51%), Gaps = 6/423 (1%) Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594 D LTG+ NR ++L +D TVM+++ID++K IND LG+ GDDVL+ Sbjct: 145 FDPLTGLANRAQLYEQLRRAIDY-GRVHRECVTVMMLNIDRFKNINDSLGVGAGDDVLIQ 203 Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654 ++ + +L+ D +ARL + F ++L +N I A + +I P+N+ EIT Sbjct: 204 ISEILRNVLRDNDTVARLGSDEFILLLDKVDNPHHITKIADKILNAIGQPLNICGHEITC 263 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712 TAS+G + + + +LK+A+ AM AK G N + + ++S D ++++ DL Sbjct: 264 TASLGVSQFPIHGDSIDLLLKHADEAMARAKSEGKNRYKIYTAQMSERTVDALLMENDLR 323 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+E E L Y P + L +I+GLEALI+W H G IS +F+ +AEE +I+ + Sbjct: 324 RALEQDEFILFYQPQVHLRTGKIIGLEALIRWQHKTKGVISPLDFIPLAEETGLIEEVGA 383 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L W Q + +N++++ E + ++K+ P ++L Sbjct: 384 WVLAHACERFHHWLKQGLSLG-KVAVNLSARQFRQAHFAETVVEALNKSKLPPQYLELEI 442 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892 +ES+ M + + LG L K+G+S+ +DDFGT S LSYL P + +K + + + Sbjct: 443 TESLTMQDTDEVLQTLGYLNKLGLSIAIDDFGTGYSSLSYLKKFPVNKLKIDRTFIHDVG 502 Query: 893 E--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 AI +SII +A N+ ++A+ + + L GCD +Q + PL N +L Sbjct: 503 SELDDGAIAKSIIDLAHNMSMLVVAEGVERLGQSRWLYDQGCDQVQGYYFCKPLSENELL 562 Query: 951 KLL 953 KLL Sbjct: 563 KLL 565 >gi|221065573|ref|ZP_03541678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] gi|220710596|gb|EED65964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Comamonas testosteroni KF-1] Length = 935 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 139/562 (24%), Positives = 253/562 (45%), Gaps = 15/562 (2%) Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 E LA +G+ + D V + I G A + G L Sbjct: 255 RRSAEELRLAAKVFEHAGEGILVTDAQSHIVNVNRAFSVITGYAREEVMGQTPRLLESDR 314 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +D + ++T+ + + E R + ++ I + + G+I Y + + Sbjct: 315 YDD-EFYQTVWQALREH--DYWHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFS 371 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT K++ + + A D LTG+PNR DRL + + + V+ ID+D +K Sbjct: 372 DITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRR-GMHLAVVFIDLDGFK 430 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 K+ND G AVGD +L L+RR+ ++L+ D LARL G+ F IL+ + + Sbjct: 431 KVNDQHGHAVGDKLLSVLSRRMTQVLREDDTLARLGGDEFVAILVDLPDISVSVPILDRL 490 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P+ + + V+ASIG + + + + ++L+ A+ AMY AK G N F Sbjct: 491 IEVAVQPVPIGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFD 550 Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R+ R + + + A+ N + L + P + + E++G EALI+W HP G +S Sbjct: 551 TEKDRTLRTRHEGFDSIENALANGQFLLYFQPKVNMRTGEVLGAEALIRWQHPTRGLLSP 610 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 + F+ I E + + + +E I WR P I +NI ++ LL + + Sbjct: 611 ASFIPIIENHPLGIDVGKWTIEAALTQIEVWRKAGLHVP--ISVNIGARHLLQPDFIMHL 668 Query: 815 QALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++S+ P ++L E+ + + + L+ ++G+ LDDFG+ S L+YL Sbjct: 669 RGMLSRHPGAQPQDLELEILETSAVEDFVQVSQLMTLCERMGLRFALDDFGSGYSSLTYL 728 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P +K + + IAIL +++ +A++ IA+ + + L RMG Sbjct: 729 KRLPAHLLKIDQGFIRDMLEDPDDIAILDALLALARSFGRNCIAEGVESIQHGEMLLRMG 788 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C++ Q + P+ + + L Sbjct: 789 CEWGQGYAIGHPMPAHEFEQWL 810 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + W D+ +T + + +LGL G+ +L IH DR F D+ Sbjct: 17 ENAHLGSWRLDLDSQLLTCSDEACRVLGLDVGAPIA-FERFLQCIHPEDRPLFDRAWDAA 75 Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK------- 524 + + L +R+ + Q W+ +R +++G G DIT+ K+ Sbjct: 76 MCGK--SLDLRYRIV-SGGQVRWIHLRATFKGDASGRPRAADGTVEDITDLKRVEQALNS 132 Query: 525 SLEGILCNAFQ 535 A Sbjct: 133 MRRQREELASH 143 Score = 74.6 bits (182), Expect = 7e-11, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 6/153 (3%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGL 440 ++ + Q + S ++ +++ + D + I I G+ Sbjct: 115 GTVEDITDLKRVEQALNSMRRQREELASHVPGMLYQYRLRPDGSSHFPYASTRIQEIYGV 174 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 A + +H DRD + + G E+RV+ D + W+ Sbjct: 175 APEDVVEDATPAFAALHPEDRDRVHETIQAS-GQSLALWHDEYRVQFPDGRVIWVEGEAS 233 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 P + +G IL + G +D+T +++S E + A Sbjct: 234 PEAMPDGSIL-WHGYIHDVTSRRRSAEELRLAA 265 >gi|170750603|ref|YP_001756863.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] gi|170657125|gb|ACB26180.1| diguanylate cyclase/phosphodiesterase [Methylobacterium radiotolerans JCM 2831] Length = 828 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 138/713 (19%), Positives = 275/713 (38%), Gaps = 34/713 (4%) Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330 +L+W T I+ + T + + I G Sbjct: 106 TWLYWRTHGDTASAATVRWGCRISAGLAFALGLAWATLPVVLFAPSGGDARLLVVAIVTG 165 Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL--IVILIGFTVIQ 388 + V + + +F + + + + + +L L + I ++ + Sbjct: 166 LISDAYVVGPLLSVSYLFAVPVIVGSFVGLARSGEPVALSLGFLLAVYAIFVVTSVRRMS 225 Query: 389 HVLATGYFSQ-GIFSDGERQSLAVLG----SGDIVWDWDIVRDRVTTTPDIATILGLA-- 441 + + + E L + + D +W+ D + +A +L Sbjct: 226 RLSRQRILDRVRVGDQSETIGLLLNAFEANASDWLWETDGTGRFQHVSTRMADVLACPVR 285 Query: 442 -------SGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADN 490 + G P I D RRG Sbjct: 286 TLQHASFPALLAGRAEASPKGSPEISPEISPEADQSADLLDRLRRGVAFHQHLIAVDTPA 345 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 W+ + +P + G + G+ +D+TE +++ I A +D +TG+ NR F D Sbjct: 346 GRRWLRLSGKPFLDQKGRFAGFRGVGSDVTEARRAEAHIAYLATRDPMTGLSNRVMFHDV 405 Query: 551 LTTILDLSATD----DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606 + + +A + +++ +D+D +K +ND +G A GD +L + R+ LL Sbjct: 406 ASEVCAAAAQTSPQAPDATVSLLYLDLDGFKTVNDSIGHAAGDALLGQVADRLRALLPAD 465 Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666 RL G+ F I+ + + A + + P + + S+G A + Sbjct: 466 AQAFRLGGDEFAILQRGRDGAAARALAEATI-GVLREPYLIDGVRAEIGVSVGIACAPAD 524 Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVY 724 ++L+ A+LA+Y AK G F + + D + A+ + E+ L Y Sbjct: 525 ATEPEDLLRKADLALYSAKQGGKGRWRGFDRDLEVRVQRRHELDEAMRQALADGEMALHY 584 Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 P++ L D ++VG EAL++W P G +S +E + IAE I AI + L R + ++ Sbjct: 585 QPLVGLQDGQVVGCEALLRWTRPGLGPVSPAELIPIAEGTGFILAIGRWALRRACAEALT 644 Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844 W + + + +NI+S + + A++S+T + R+++ +ES+ + N Sbjct: 645 WPAR-----LRVAVNISSVHFRRPDFFADVAAVLSETGLAAERLEIEITESIFLANTPHV 699 Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSI 902 L LR +G+ + LDDFGT S LSYL P D +K + + + + + + ++ +I Sbjct: 700 LDNLRALRALGVRIALDDFGTGYSSLSYLTQFPVDKIKIDRAFVRDLSSRPECLTVIEAI 759 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +A+++ + + + E + L C+ Q + I L++ Sbjct: 760 MVIARDLRIDVTVEGVETEQQAELLRLRRCNSAQGFLYSPARPPEEIPGLIER 812 >gi|330898348|gb|EGH29767.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 732 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 18/587 (3%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ ++ + + R S D + D ++ I Sbjct: 147 VLQDLAVMVIERMELRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495 G S G + I R L + D + Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAIHRDGHTLPI 264 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + G+ I DIT++ ++ + + A D+LTG+ NR + R+ Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D + +++ID+D +K +ND LG A GD VL + R+ E + +++RL G+ Sbjct: 323 -----DAQMSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGD 377 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F + L + K +A+ I PI + I + ASIG + + + +ML Sbjct: 378 EFVVFLFDTADPEKAIKLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGADYDDEQMLG 437 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAKWRNTGCEE- 556 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 +G+ + DDFGT + LS L P +K + S ++G ++K I+ +++ +A Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNL 676 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957 + A+ I + CD Q P+ + + + Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHDFTERYISSHN 723 >gi|307296880|ref|ZP_07576697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] gi|306877601|gb|EFN08828.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] Length = 704 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 148/583 (25%), Positives = 251/583 (43%), Gaps = 12/583 (2%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 L G V+ + + E L V + + W D + T Sbjct: 96 AGRLTGDMVMVDLTGEQAEIGRLRRSMENLRLIVEYNPQLPWIADPDGRIIDFTDRWLEN 155 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497 GL G WL H +D + + R+ D Q+ WM Sbjct: 156 SGLEREEAEGN--GWLATTHPDDIGPLTQRIGHSLTT-GEPFDVRVRLMVND-QYRWMRA 211 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 + P + +G I+R+ G DI E E I NA D+LT +PNR F L L Sbjct: 212 QAYPRRDEDGRIIRWYGYTEDIHESVLIEEQIRWNAEHDSLTKLPNRAMFNACLDKALAD 271 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 + TD + V ++DID +K +ND++G GD++L S R+ ++ ++ARL G+ F Sbjct: 272 AMTDFK-KVGVFLLDIDNFKDVNDLMGHHAGDELLKSFASRLRDVFAEDAVVARLGGDEF 330 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 I++ N ++A A + +I R + SIG AS+ ++E+L++A Sbjct: 331 AILVKDVENRAQLAALANRIL-TIRETFFSAGRSLECRVSIGVASFPEDGRVATELLRHA 389 Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 +LA+Y AK G ++ F S +RV + AV + + Y P + L E+ Sbjct: 390 DLALYRAKSLGRGRMQMFEPSLLEDMQERVAMINRARTAVRDGTIISYYQPKVSLQTGEL 449 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 VG EAL++W S +E ++ + I M ++ D+ +WR + Sbjct: 450 VGFEALLRWRDSCGTIRSPAEIYAAFDDHDVADMIGQTMTSQVFADMAAWRARGLTLG-H 508 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKI 854 + IN++S +L + + + P I++ +E V +G + R + L + Sbjct: 509 VAINVSSAELRRERFAGRLIETMERFSIEPDAIEIEITEGVFLGAGSDTVRRSIDELHRC 568 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912 I L LDDFGT + LS+L +P T+K + S ++G T E AI+ ++I + + + Sbjct: 569 HIPLALDDFGTGFASLSHLRSLPVSTLKIDRSFVSGVTAREGDAAIVSALITLGRALNMK 628 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++A+ + +L MGCDY Q + P +I L+ Sbjct: 629 VVAEGVEEADQSIKLKEMGCDYAQGFYFGRPTPSENIPALIHS 671 >gi|254245147|ref|ZP_04938469.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192] gi|126198525|gb|EAZ62588.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192] Length = 818 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 123/586 (20%), Positives = 241/586 (41%), Gaps = 15/586 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++++L Q ++ + ++ ER + + GD V D P Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490 + G P+ + + + R+ +++ + GR + +R D Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + P+ G+I + + +D+T +++ + + A D LTG+ NR+ F R Sbjct: 333 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L+ + R +M +D+D++K +ND G A GD++L + + + L+ D LA Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ FGI+L + + + + + T S+G T Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726 E L++A++A Y AK +G N V+ F R + + + LA+E L P Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570 Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 I+ L + + +E L++ + F+ AE ++ I+ +++E R ++ Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630 Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 PI IN++ + D + + L ++ P I +E+V + N Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + + L+ G +LDDF S YL ++P D +K +GS + A+++ Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I + + IA+ + ++ L +G DY Q + +PL F+ Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 796 >gi|238755577|ref|ZP_04616914.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) [Yersinia ruckeri ATCC 29473] gi|238706177|gb|EEP98557.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) [Yersinia ruckeri ATCC 29473] Length = 669 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 126/559 (22%), Positives = 247/559 (44%), Gaps = 12/559 (2%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 V + ++ D G + G L + R Sbjct: 113 EQVVSEANSVIVILDKNGSVQRFNRLSEEYTGKKEQDVIGKNVFELFMTQKEGASS-RKN 171 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 ++ F R + E V + ++ S S + L I DIT+++++ E Sbjct: 172 IEGFFK-RGASYEVERWVNTMKGKRLFLFRNKFVHSGSGKNELFLICSGTDITKERRAQE 230 Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587 + A D +TG+PNR + +R+ + + T ++ +D+D +KK+ND G Sbjct: 231 RLRVLANTDMITGLPNRHAIHERINSAI---QTRGESSVGIIYLDLDNFKKVNDHYGHMF 287 Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647 GD +L ++ I LK ++LARL G+ F +++ + + +++ + A + + P + Sbjct: 288 GDRLLKDVSLSILSCLKENEMLARLGGDEFIVLIEN-TSIIELEETAQRILDQMRAPFRI 346 Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705 E+ SIG A T ++++A+ AMY AK G F + + + Sbjct: 347 GLIEVYTGCSIGIALCPQHGETLENIIRSADTAMYTAKELGKRTYSIFSQEMNKKVSEYM 406 Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765 + +L +E +L + Y P I E+V +EAL++W + G I EF+ AEE Sbjct: 407 WLDTNLRKGLEQHQLIVFYQPKISTRTGEVVSVEALVRWSTTERGLIPPIEFISYAEESG 466 Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825 +I + ++L+ + + W+ + + I +NI+++ L+D E+ + Sbjct: 467 LIAPLGQWVLQTAMQQAVDWQKKG--IKLRIAVNISARQLVDEEIITAFIKSLESCGIQS 524 Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885 S I + +ES ++ + + ++ +L+ +G + LDDFGT S LS L IP D +K + Sbjct: 525 SPIDVELTESCLIEDENAAINIIKQLKALGAEVHLDDFGTGYSSLSQLARIPIDAIKLDQ 584 Query: 886 SLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943 S + G + + +++R+I +A+ ++ +IA+ + + + L +G D Q A P Sbjct: 585 SFVRGIDKNKVAQSLVRAITVVAETLQMRVIAEGVETAAEEEFLNSLGVDEKQGFLYAKP 644 Query: 944 LGFNSILKLLKERFPLVKN 962 + + L + P + N Sbjct: 645 MPAEELEHWLSKYTPHLPN 663 >gi|299067929|emb|CBJ39143.1| putative integral membrane sensor protein; putative GGDEF, MHYT and EAL domains [Ralstonia solanacearum CMR15] Length = 701 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 151/725 (20%), Positives = 278/725 (38%), Gaps = 67/725 (9%) Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG-------YITFSGIACIAILFC 298 L+++ C I S + + A + Sbjct: 6 YHPLLVLFSLCVAILASYTALDMAGRIATARGHAAHWWLGGGACAMGLGIWSMHFVGMLA 65 Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG---LW 355 S P+ + I + + F ++ + L +L+ Sbjct: 66 FSLPIPLGYDPWITLASLLIAVALSAFALWLVCQRRLPWPRLAGGALLMGAGVASMHYTG 125 Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415 MA + + PAL V+I IL + S+ + + ++ + + Sbjct: 126 MAAMRMSPGILYDPALFCLSVVIAILASGAALWIAFRLRRQSRHVRAKRAGAAVVMGLAI 185 Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-----RNWLPYIHINDRDNFRTILDS 470 + T A G GS+ G WL + +L Sbjct: 186 VGM---------HYTGMAAA---GFPLGSLCGAAGGGVSAEWLALVI---IVVTLAVLAM 230 Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + L+ E R A T K+ + Sbjct: 231 ALLISVLDLRMEAR------------------------------TAVLATSLAKANRELA 260 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 A DNLT + NR DRL + + +M +D+D +K +NDV G VGD Sbjct: 261 YLALHDNLTKLSNRLLLEDRLEQAIQAAGRTRG-SFALMFLDLDGFKAVNDVYGHHVGDL 319 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L + +RI ++ D +AR+ G+ F +L S A A+ ++ P + Sbjct: 320 LLADVAQRIVACVRQQDTVARVGGDEFV-VLASVGEPADAGTLADALLAAVRAPFLVDGY 378 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIK 708 E+ V+ SIG A + ++L NA+ AMYHAK G + F S ++ + Sbjct: 379 ELRVSTSIGIALYPDDGAGQHDLLTNADAAMYHAKGMGRDTYCFFEASMNANVHQQLQLV 438 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 +DL LA+E EL L Y P +VG+EAL++W HP+ G + F+ +AE+ +I Sbjct: 439 QDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPEHGLVPPDAFIPLAEKTGLIV 498 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 + ++L+ R + WR + I +N+++ L + ++ +++ P + Sbjct: 499 PLGAWVLDEACRQMAQWRRE-GRTNWSIAVNLSAVQFAHAALVDTVRDTLARHALEPQGL 557 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 L +ES M + + S +L +L +G+ +++DDFGT S L YL +P +K + + Sbjct: 558 TLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFV 617 Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + AI+ +++ + + + I+A+ + E LTR+GC +Q + + P+ Sbjct: 618 RDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTRLGCHALQGNLLGRPMTA 677 Query: 947 NSILK 951 ++L+ Sbjct: 678 QALLE 682 >gi|284042297|ref|YP_003392637.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] gi|283946518|gb|ADB49262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] Length = 994 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 131/619 (21%), Positives = 255/619 (41%), Gaps = 27/619 (4%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLV-----------LIVILIGFTVIQHVLATGYFSQ 398 I + I R + A V G+V IV + V A + Sbjct: 374 GTITVTSRIRHRDGRYVWIEARVRGVVDPATGEMKEGQAIVRDVSERVASEA-ALRESVE 432 Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 I + +R A + + D+ + + I G + ++ H Sbjct: 433 RIAAAEQRFRTAFEAAPIGMALSDLEGRFIQVNDALCAITGYTREELE--EMSFGELSHP 490 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + ++ S + + E R Q W+ + + ++G ++G D Sbjct: 491 ADVEREAEMMASLLSGEQSTYWMEKRYVDVVGQVVWVAVHATLVRAADGSPQHFLGQIQD 550 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ++E+ + + A D LTG+ NR+SF L + +V+DID++K Sbjct: 551 VSERVRYEAQLQHMADHDPLTGLLNRRSFERELNQHIHRVERY-GAEGAALVLDIDRFKH 609 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD+++V + + + L+ D+LARL G+ F ++L + A ++ Sbjct: 610 INDTLGHNVGDELIVKVAQTLRSRLRDSDVLARLGGDEFAVLLPK-GGQQEAEAVAESIL 668 Query: 639 KSIAMP--INLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESF 695 S+ + R +T S+G A + +++ ++L NA+LAMY AK G + +F Sbjct: 669 ASVRAQSVLTTAGRRRPITTSVGIALFGETGGLSAEDVLVNADLAMYDAKEAGRDRAATF 728 Query: 696 RVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 R+ E + A+E L PI+ L + E L++ + Sbjct: 729 SSQERGASRMKARITWAERIRDALEEDRFTLYAQPIVELRSGAVRQHEVLLRMLDEQGEV 788 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I + F+ +AE +++ I+ +++ R +++ R +NI+ D +L Sbjct: 789 IPPAAFIGVAERFDLMQEIDRWVVARAIKEMGQQRRAGRDLVFE--VNISGASTGDPDLL 846 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 ++ + + P + L +E+ + N R++ RL ++G LDDFG Sbjct: 847 TIIERELRENEIDPINLVLEVTETTAVANIPRAQEFAARLAELGCRFALDDFGAGFGSFY 906 Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL ++PFD +K +G + +++ ++R+ + +A+ + IA+ + + ++ L Sbjct: 907 YLKHLPFDILKIDGEFVRSCTTSQTDQLLIRAAVEIARGMGKETIAEYVGDDETVELLRT 966 Query: 930 MGCDYIQDSHVASPLGFNS 948 +G DY Q H+ P Sbjct: 967 LGVDYAQGFHLGRPAPLEQ 985 Score = 97.7 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 85/247 (34%), Gaps = 31/247 (12%) Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA----------TGYFSQG 399 W + + I + + + +LI + A Sbjct: 240 WVLAIGRPEPSNAVTWAIAISGTVLTIALGLLIWQAARRERYALDLVEERMAERDRAEAE 299 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459 + + +R L + D++ +D +P ++G + G R ++H + Sbjct: 300 LRAAEQRHRLLADNATDMILVFDPSGVATYVSPASRELMGYDPEELVG--RQPREFVHPD 357 Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIAND 518 D D + V + G + R+R D ++ W+ R+R + + G++ I D Sbjct: 358 DTDEVVGA-RTRVAEQGGTITVTSRIRHRDGRYVWIEARVRGVVDPATGEMKEGQAIVRD 416 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-DNLRPTVMVIDID-KY 576 ++E+ S + + ++R+ T + + + D++ ++ Sbjct: 417 VSERVASEAALRES---------------VERIAAAEQRFRTAFEAAPIGMALSDLEGRF 461 Query: 577 KKINDVL 583 ++ND L Sbjct: 462 IQVNDAL 468 >gi|159897514|ref|YP_001543761.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Herpetosiphon aurantiacus ATCC 23779] gi|159890553|gb|ABX03633.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Herpetosiphon aurantiacus ATCC 23779] Length = 704 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 138/577 (23%), Positives = 257/577 (44%), Gaps = 8/577 (1%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + I+ L Q + S + D + DI P +++L + Sbjct: 113 LSAIEMGLYRHRVDQRLRRMERLYSSTLNSVDDAIITTDIYGLIKFANPTASSLLNRPND 172 Query: 444 SMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 ++ G I + + + + ++ L + + ++ D + I + Sbjct: 173 ALIGQFIGDVVQLLDRETKITYQFDLPYLIQQANHHMLLPRQILVNDQAKFVVAPSISQI 232 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + I + + D+ + + E I A D LTG+ NR F++RL ILD Sbjct: 233 REEDEAIAGIVLVLRDMRDLDAAEEHIRHQALHDALTGLANRNVFINRLQYILDHYHLH- 291 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 V+ ID+D++K IND LG VGD +L+ + +R+ ++ D++ARL G+ F I+L Sbjct: 292 -HHHAVLFIDLDRFKIINDSLGHIVGDKLLIQVGQRLERCIRSHDLVARLGGDEFTILLD 350 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 N+ + + +A P ++ ++ ASIG E+L++ + AMY Sbjct: 351 GVNDIHDVLRVTDRLLSVVAEPYHIDGYKVFTAASIGIVVIDDHYKHYHEVLRDVDSAMY 410 Query: 683 HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK +G F + ++ +L AVE EL L Y PII+L E+ G EA Sbjct: 411 RAKSQGRGCRAVFDEEMHVEALRTLQLEVELRRAVERDELCLHYQPIIKLATGELSGFEA 470 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILIN 799 L++W+HP G I + F IAEE ++ I +L + I +W+++ PP+ + +N Sbjct: 471 LLRWNHPTQGVIGPASFFAIAEETGILAQIGWKLLRESCQQICAWQNEFQFHPPLELSVN 530 Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859 + L + +Q+++++T + +E V+M R+ ++ L +G+ + Sbjct: 531 FTHRQFFQANLIQQVQSILAETGMPARHLCAEITEGVMMQ-SNRAVEVMHELHDLGVQVH 589 Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDI 918 +DDFGT + LS L P D +K + + + S + +I + I MA+++ ++A+ + Sbjct: 590 IDDFGTGYASLSLLHSAPIDVLKIDRTFIQPESGASKHSIAQLISLMARSLGCAVVAEGV 649 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L MGCD+ Q + L L++ Sbjct: 650 EDAQTAQMLIEMGCDFGQGWWYSKALPPEEARVLIRN 686 >gi|332993627|gb|AEF03682.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Alteromonas sp. SN2] Length = 701 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 117/578 (20%), Positives = 262/578 (45%), Gaps = 11/578 (1%) Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + +++ + + E+ ++ + D V D P + G Sbjct: 124 MQRQKSQLSIYNERVLEEKEQLNITLNAIADGVIATDADGIVTFINPVAQRLTGFNEFEA 183 Query: 446 HGP-IRNWLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 G + + + L + R + + ++ + + + P+ Sbjct: 184 CGRMVDDIMELRDATTNAGVINPALYTMKVKRPVAMAFNVKLVSKQGKECRVEDTASPIL 243 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 ++ G + + + D++E + A D LTG+PNR D++ ++ + + Sbjct: 244 DTQGRVKGSVVVFQDVSESVAMAVQMTHVANHDQLTGLPNRVLLHDKIVQSINRTDKAKH 303 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 +++IDID +K +ND LG +GD +++S+++R+ + +AR+ G+ F +L Sbjct: 304 -SVALLLIDIDNFKYLNDALGHKIGDSIILSISKRLQQACGPSATVARVGGDEFACLLTH 362 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A+ +S PI++ + ++ SIG + + ++ EM+++++ AMY Sbjct: 363 VSGLS-VDGVAMNCLQSAREPIHIDGQYHQLSLSIGISLFPQDASSAEEMMRHSDTAMYR 421 Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G + F + R ++ + L A++N+ L + + P L ++VG E+L Sbjct: 422 AKATGKDKFSFFSKDLKLAMRKRVEMEVKLRTALDNNSLAIFFQPKYDLNLNKVVGAESL 481 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++ +S EF+ ++EE +I + +L + I + P I +N++ Sbjct: 482 VRLIDDDGSIVSPDEFIPLSEETGLIHRLGKQVLVKSCEFIAKCVEA--NEPFKIAVNVS 539 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 ++ + + + + +I T P ++L +ES +M + +++R +L L +G+SL LD Sbjct: 540 AQQIANPSFAKEVGEVILSTGIDPGLLELEVTESALMADFDQTRNVLLALSSLGLSLALD 599 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL P + +K + S + + A I+ +I+ + + ++A+ + Sbjct: 600 DFGTGYSSLSYLRQFPLNVLKIDRSFIKDMDTEPQALDIVTAIVRLGNCLNMVLVAEGLE 659 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKER 956 E+ L ++GC+Y Q ++ P+ + + L ++ Sbjct: 660 TELQFHSLRQLGCEYGQGYYMCKPISEDEFTTRFLNQK 697 >gi|328469301|gb|EGF40247.1| sensory box/GGDEF family protein SrcC [Vibrio parahaemolyticus 10329] Length = 774 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 9/442 (2%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I +K S + + A D LT +PNR +RL L ++ + + VM ID+D +K+ Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGS-KVLVMFIDLDHFKQ 391 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G VGD++L +R+ + + D+LAR+ G+ F +++ ++ A ++ Sbjct: 392 INDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 451 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + + P E +T S+G + + + ++L A++AMY K G + + + Sbjct: 452 SAFSEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 511 Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+ N L + Y PII L +IVG EAL++W+ K+G ++ E Sbjct: 512 MNQDLQRYLDLESRLRNAISNQLLEMYYQPIIELKSGKIVGAEALMRWNDEKFGFVNPEE 571 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815 F+ IAE+ +I + F +++ W+ P+F+ +N +S + L ++ Sbjct: 572 FISIAEKNGLIHQLGEFAIQQACHQASQWQSI---SPLFVSVNFSSVQFRYCDRLLAFIR 628 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ + + +ES++ + + +L LR +G LT+DDFGT S LSYL Sbjct: 629 QSLEESGLPAEQFDVEVTESLLFNHDDELVDMLDNLRALGTKLTIDDFGTGYSALSYLQK 688 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S M + ++ II MAK + I+A+ I + + L + C+ Sbjct: 689 FPFDRLKIDRSFMQNVFENDSDRELVNVIIAMAKALRLKIVAEGIEEQRHVDYLNELNCE 748 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 + Q H + P+ +LL + Sbjct: 749 FGQGFHYSRPVPAKEFEQLLNQ 770 >gi|46579130|ref|YP_009938.1| GGDEF domain/EAL domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448543|gb|AAS95197.1| GGDEF domain/EAL domain protein [Desulfovibrio vulgaris str. Hildenborough] Length = 502 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 132/483 (27%), Positives = 229/483 (47%), Gaps = 6/483 (1%) Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 G ++E+ + + + P+ +L A DI+E+K++ I AF D Sbjct: 8 GNRRFEWIFMRSGGSEVPCEVTLSPVMQRGRRMLHL--TARDISERKRNEAQITHLAFHD 65 Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596 +LTG+ NR FLDRL + + V+ ID+D++K IND LG A GD +L + Sbjct: 66 SLTGLANRVLFLDRLAHAIATCRRAPDRNFAVLFIDLDRFKVINDSLGHAAGDGLLSIIA 125 Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656 I ++ D +AR+SG+ F +++ + A + + I P+ + E+ ++A Sbjct: 126 SAIAANIRETDTVARISGDEFTVLVHEPPSPRFAIKMARRILERIKQPLTIEGFELVISA 185 Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714 S+G S ++L++A++AMY AK G + + F R+ + ++ DL A Sbjct: 186 SMGIVIGNSGYTDPHQVLRDADIAMYKAKRAGKDKLRVFGSRMHEQALHAMRLENDLRQA 245 Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774 ++N +L Y PI+ L + G EAL +W HP GNI S F+ IAE+ I + M Sbjct: 246 IDNGDLSCHYQPIVNLESGALEGFEALARWQHPTLGNIPPSTFIPIAEDTGRIIPLGRAM 305 Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834 L + S R I +N++ + L + ++A + T P + L +E Sbjct: 306 LHKACAFAASIRGTLPQGDPVIHVNLSPRQFLSRQRLREVEAALDATGLPPELLVLEITE 365 Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893 S++M NP ++ ++ L++IG+ L+LDDFGT S L L P D+VK + S + + Sbjct: 366 SLLMENPRVAKSIMAGLKEIGVRLSLDDFGTGYSSLGSLQDYPLDSVKIDRSFIRAMNDG 425 Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 I+R+I+ + ++ I + + + L G +Q A P+ L Sbjct: 426 RDAEHIVRAILKLVSHLRLEAICEGVETTMQAANLMAFGATRMQGFLFAKPMPSEKARSL 485 Query: 953 LKE 955 L+ Sbjct: 486 LER 488 >gi|254507911|ref|ZP_05120040.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio parahaemolyticus 16] gi|219549147|gb|EED26143.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio parahaemolyticus 16] Length = 774 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 123/444 (27%), Positives = 216/444 (48%), Gaps = 9/444 (2%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +++ +K S E + A D+LTG+PNR +RL L + + VM ID+D + Sbjct: 331 SEVERRKASEEELAFQAKHDSLTGLPNRVYGSERLALELSRAERVGS-NVLVMFIDLDHF 389 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND +G VGD+VL R+ ++ D+LAR+ G+ F +++ ++ FA Sbjct: 390 KQINDSMGHFVGDEVLKLAAERLQNAVRKTDLLARIGGDEFLLVIPDLQDADSAKRFATT 449 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + P E ++AS+G + + ++L A++AMY K G N + Sbjct: 450 VLSVFNEPFVWQNHEFFLSASVGMSMYPQDGGNVEQLLACADMAMYRVKQDGRNAFCFYD 509 Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + + ++ L A+ ++ L L Y PII L +IVG EAL++W+ K+G ++ Sbjct: 510 HNMNQDLQRFLELESRLRHAISHNLLELYYQPIIELDSGKIVGAEALMRWNDDKFGFVNP 569 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEG 813 EF+ IAE+ +I + F + + + W+ A P+F+ +N +S L + Sbjct: 570 EEFIAIAEKNGLIHQLGDFAIRQACQQAAHWQSVA---PLFVSVNFSSVQFRYCERLFDQ 626 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ + ++ + +ES++ + +L LR +G LT+DDFGT S LSYL Sbjct: 627 IKQHLEESTLPAEMFDVEVTESLLFNHSGDLMEMLHNLRSLGAKLTIDDFGTGYSALSYL 686 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 PFD +K + S + E ++ II MAK + I+A+ I + + L + Sbjct: 687 QKFPFDRLKIDRSFLQNMFENESDRELVNVIIAMAKALNLKIVAEGIEEQRHVDYLKNLN 746 Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955 C++ Q H + PL LL + Sbjct: 747 CEFGQGFHYSRPLPAKDFEALLAK 770 >gi|307726091|ref|YP_003909304.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003] gi|307586616|gb|ADN60013.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003] Length = 647 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 122/438 (27%), Positives = 223/438 (50%), Gaps = 5/438 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + + A D LT +PNR++F D L L ++ D R +M++D+D +K +ND L Sbjct: 190 RAEKDLEYLASTDPLTDLPNRRAFYDELKARLHRASAADK-RVALMMVDLDNFKTVNDTL 248 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD++L + + +++ D+++R+ G+ F +++ + + ++ A + ++++ Sbjct: 249 GHGAGDELLKQVAEALRNVVRPNDLVSRIGGDEFAVVIGPDASRVRARATAGRIARNLSR 308 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701 P L + VTAS+GF+ + +E++ NA++A+Y AK RG + F+ Sbjct: 309 PFVLHGSDSAVTASVGFSVYPEDTGEMAELVSNADIALYSAKSRGKSIAVEFQSEMTAEA 368 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 R I+ +L AV+ L +VY P + ++G EAL++W HP G IS +EF+ IA Sbjct: 369 QRRARIEAELRRAVDQDGLEIVYQPQFDCLSGRLLGAEALVRWTHPSEGPISPAEFVPIA 428 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E +I A+ ++L R RD SW + + +NI+++ L D + + K+ Sbjct: 429 ENSDLIVALGRWVLWRACRDAASWNA-GREASVHVAVNISARQLRDEGFTREVCDALQKS 487 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 S ++L +ES +M N + LR G+ L+LDDFGT S LSYL P ++ Sbjct: 488 GLPASLLELELTESQLMSNMSVGIQAMQELRAAGVRLSLDDFGTGYSSLSYLQSFPVHSI 547 Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 K + S + I+ +II MA + ++A+ + ++ L CD +Q Sbjct: 548 KIDRSFICPLPNGGQPIVTAIISMAHSFGLLVVAEGVEYPAQLEWLCDARCDVVQGFLTG 607 Query: 942 SPLGFNSILKLLK-ERFP 958 P+ +L ++ E+ P Sbjct: 608 RPMSLQQLLATIRAEQAP 625 >gi|289625137|ref|ZP_06458091.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648694|ref|ZP_06480037.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330868009|gb|EGH02718.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 703 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + + A DNLTG+PNR DR+ + + +M +D+D +K +ND Sbjct: 254 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 312 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + R+ L D LAR+ G+ F +L+ ++ A I Sbjct: 313 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 371 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++ ++ SIG + + T E+L NA+ AMYH K G N F ++S Sbjct: 372 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 431 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +++ + +DL A+++ + + Y P + +G EAL++W+HP+ G + +F+ +A Sbjct: 432 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 491 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I ++L+ R + W Q I +N+++ L + +++ Sbjct: 492 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 550 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + + L +E+ M + + S +L RL ++G+ L++DDFGT S L YL +P + + Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + AI+ +I+ + + + I+A+ + + + LT +GC +Q Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 670 Query: 940 VASPLGFNSILKLLKE 955 + PL L ++ Sbjct: 671 LGYPLPAEQFLDEIRA 686 >gi|294649933|ref|ZP_06727325.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|292824162|gb|EFF82973.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 949 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 138/565 (24%), Positives = 254/565 (44%), Gaps = 16/565 (2%) Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---P 454 D ER L + + ++ D + + P I L + G + Sbjct: 391 RKDQERLKLSASVFEQASEGIFILDENFNYIEVNPKYEQITELDKQVILGKQLFEITKQN 450 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 +H NF+ + + + + EF+ + ++ + I + + ++ YIG Sbjct: 451 KLH---HQNFQLSILDTLAHE-HEYEGEFQETYHSEKSCFLWMHINAVKDEQDRVINYIG 506 Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574 I +D TE+K + + D LT +PNR + +L L A V+ ++ID Sbjct: 507 IVSDQTERKHQEQRLSYLTNYDTLTDLPNRFYYQQQLHQYLVNEAAIQ--HLAVIRLNID 564 Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634 +++ +N+++ G+++L + +R+ ++A LS + F II I Sbjct: 565 RFRTLNELVSNQAGNELLKQVAQRLRISNIDALLVAHLSADDFAIIYEMSPLHPPIHQLC 624 Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694 + ++ + P + ++E V+ SIG A + + +AE A+ AK GGN + Sbjct: 625 NNIVENFSQPFYIADQEYFVSVSIGVAMFPEHGRQVDNLNTHAEQALNEAKRLGGNTIRY 684 Query: 695 FRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752 + + ++ DL A++N+EL + Y P + D + G EALI+W+HP G I Sbjct: 685 YSNERANLAAQYSDLELDLRKAIQNNELVVYYQPKMTTHDNLVNGFEALIRWEHPSKGLI 744 Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812 F+ +AE +I I F+L + A+ + W + P I I +NI + +L +L Sbjct: 745 MPDIFIPLAESTSLISDIGQFVLHQAAKQLQRWIE-LGYPQIHIAVNIVVQQVLRGQLLH 803 Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872 + ++S+ S ++L +ES + N E + +L L+ IS+ LDDFGT S L+Y Sbjct: 804 DVDTILSQYKISGHNLELEITESAFLENTETVKTVLEALKDRHISIALDDFGTGYSSLAY 863 Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 L P DT+K + + ++ + AI+ ++I M K I ++A+ + E L + Sbjct: 864 LTEYPIDTLKIDRAFISKIGNSKQDAIVNAMIAMGKTIGLKVVAEGVETEAQRDYLQKQN 923 Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956 CD +Q A PL K L++ Sbjct: 924 CDILQGYLFAKPLTALDATKFLQQH 948 Score = 89.2 bits (220), Expect = 3e-15, Method: Composition-based stats. Identities = 52/410 (12%), Positives = 115/410 (28%), Gaps = 53/410 (12%) Query: 165 ISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAM 224 + L + Y + SF L ++G+ +L L + ++ ++ Sbjct: 4 VQKQGLAPFIYTDQINYSSHIRSFVLS---VLGIC-VLDYALFGLFYSFTPNIFTAWISI 59 Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284 V L F K + + +I S+ ++ + + Sbjct: 60 TAVFLLIFFFLCRFSLKCYS-SPAFIKRSHVLFQIVCFSTGLLLGINSIIITYYLIHEVP 118 Query: 285 ITFSGIACIAILFCMSFYYPMVTASIA---RITLASIVLYYTYFIIYHGMKGYERAVLLI 341 ++ + + + R + II H + + L Sbjct: 119 QLTGSHILTLTALLLTTSHIIALTFLTQHIRYFFLFFLPSVLPLIISHLLSRDHQHTLFY 178 Query: 342 PAWILIFIWFIGLWMAITKRL------------------DNDIIQPALVGGLVLIVILIG 383 A+ F + A K ++ L L V Sbjct: 179 LAYYFTFFATLLCAHATFKIHKHLSQVLEKNKQLVDVAEQHNQWTEELCQQLQHEVNKSK 238 Query: 384 FTVIQHVLATGYFSQGIFS------------DGERQSLAV--LGSGDIVWDWDIVRDRV- 428 Q Q + + RQ+LA +G W+W++ V Sbjct: 239 DIEAQLQFNNHLLEQKVRDRTYDLTQMNESLEEHRQNLAFAHETAGIRPWEWNLENQTVG 298 Query: 429 ---TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485 T + + +H +D + + L + R + +R+ Sbjct: 299 VTNTHSQAVKR-------DSENHYTLLHKIVHPDDIERVKNALYHHICGETLRYEETYRI 351 Query: 486 RAADNQFHWMIIRIRPMSN--SNGDILRYIGIANDITEQKKSLEGILCNA 533 + + ++ W+ + + + LR +GI DI +++K E + +A Sbjct: 352 KRPNGEWSWIHDVGQVIQRHPEDQTPLRMVGIHRDINQERKDQERLKLSA 401 >gi|320328997|gb|EFW84996.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 653 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + + A DNLTG+PNR DR+ + + +M +D+D +K +ND Sbjct: 204 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 262 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + R+ L D LAR+ G+ F +L+ ++ A I Sbjct: 263 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 321 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++ ++ SIG + + T E+L NA+ AMYH K G N F ++S Sbjct: 322 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 381 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +++ + +DL A+++ + + Y P + +G EAL++W+HP+ G + +F+ +A Sbjct: 382 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 441 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I ++L+ R + W Q I +N+++ L + +++ Sbjct: 442 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 500 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + + L +E+ M + + S +L RL ++G+ L++DDFGT S L YL +P + + Sbjct: 501 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 560 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + AI+ +I+ + + + I+A+ + + + LT +GC +Q Sbjct: 561 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 620 Query: 940 VASPLGFNSILKLLKE 955 + PL L ++ Sbjct: 621 LGYPLPAEQFLDEIRA 636 >gi|323139092|ref|ZP_08074150.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC 49242] gi|322395656|gb|EFX98199.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC 49242] Length = 763 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 152/774 (19%), Positives = 297/774 (38%), Gaps = 51/774 (6%) Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244 + TL GI+ G+ + + ++ + + A+ + Y Sbjct: 25 DTTETLIAGIVFGLLAPMIA-----WLSTGEATYLALVALMSCIGAY------------- 66 Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304 + LS + +W + S +A + + + Sbjct: 67 -----------RIHVLLSHNHTPIAERRRDARKWEHRYTIGAVSFMALLGFSTAI-LFSQ 114 Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364 + I + + + + ++ + + I ++ + Sbjct: 115 HHSEMIGYYGVIIMTGVTGNLAARNAARPNIVFWQVVGTCMPLAITVF-FSFSVWYWGIS 173 Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424 + L V + H+ + + ++ SLA+ + D Sbjct: 174 AFLIFG-----ALSVFKTTKFLKGHLESALRNGRDASRQRQKFSLALNSMTHGLCMGDSE 228 Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484 + + G+ + + H R + +++ V R + Sbjct: 229 LNITVVNRRVIEFFGIVAAT---TPIRLEALAHAIGRSVAMSSVETTVF--TERWKRHAA 283 Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544 + A+ H + R + +I + D+T Q+++L I A D+LTG+PNR Sbjct: 284 MPHANVFTHKIGERFFDFHCERAEGNAFITVIEDVTAQQRALREIERIAHFDDLTGLPNR 343 Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604 F D L L L+ ++ ID+D++K++ND LG VGD +L S+ R+ Sbjct: 344 YQFQDTLGENLVQLNER-GLKAALINIDLDRFKEVNDTLGHTVGDQLLASVGARLSACAP 402 Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664 P ++ARL G+ F +++ + I A M + P + I++ ASIG A+ Sbjct: 403 APHMVARLGGDEFCVLVRATRELPDIDALAQRMIAEMNRPFFIDGNTISIGASIGVAAAP 462 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722 T +LK ++LA+Y AK F S + I+ +L A+E +L + Sbjct: 463 QDSETPIGLLKCSDLALYRAKSGQRGTAVWFTPQMQEALSRKREIETELRHALEADQLIV 522 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y PI+ +V +EAL++W HP+ +S EF+ +AEE +I I + L+R D Sbjct: 523 HYQPIVDSRRGAVVAMEALLRWRHPERCLVSPVEFIPVAEETGLIVDIGAWALKRACSDA 582 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 ++W + + +N++ + +L + A IS+T SP R++L +E+ +M + Sbjct: 583 MAWPAH-----VRVAVNLSPRQFHQTDLVTTIAAAISETGLSPDRLELEITETTLMAQTD 637 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900 + + +G+ L+LDDFG S L YL P VK + S + K AI+ Sbjct: 638 DVERKVRAIDALGVRLSLDDFGAGYSSLGYLDRFPVKKVKIDQSFARQAIDSPKTQAIIG 697 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +I +A+++ ++A+ + + + IQ + P + L Sbjct: 698 AISLLARDLGIDLVAEGVENHDQLAFMASKNIFLIQGYLYSKPRPIEELAPHLA 751 >gi|109898570|ref|YP_661825.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Pseudoalteromonas atlantica T6c] gi|109700851|gb|ABG40771.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Pseudoalteromonas atlantica T6c] Length = 780 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 139/441 (31%), Positives = 227/441 (51%), Gaps = 7/441 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E++ + + I A D LT +PNR + L L+++ + + V+ +D+D +K IN Sbjct: 339 ERQNNSDLIWHQANFDELTQLPNRNIMGEHLKQALNVAKRNQ-TQVAVLFLDLDNFKDIN 397 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG +VGDD+LV +RI + ++ DI+ARL G+ F +I+ + + A + K Sbjct: 398 DTLGHSVGDDLLVDCAQRIKDCIRHKDIVARLGGDEFVVIINDIVDFSGLEKTAQKILKG 457 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 ++ P +L + +ASIG + S +LKNA+ AMY AK G N+ + + Sbjct: 458 LSRPYHLQSEIVHTSASIGITIYPDDADDVSSLLKNADQAMYGAKAIGKNNYHYYTKNMR 517 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R+ + DL A++N E ++VY PII L+D+ I EALI+W HP G + +F+ Sbjct: 518 DAAVKRMALITDLRHAIDNDEFFIVYQPIINLLDQSITKAEALIRWRHPIRGLVGPDDFI 577 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM-QAL 817 +AEE +I I+ ++ E++ RD+ WR P + I IN + D E C + Sbjct: 578 PVAEETGLIIDISDWVFEQVCRDVCQWRQAL-CPTLQISINTSPVHYTDPEHCITLWLEK 636 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + P + L +ES++M + L + R+ G+ + LDDFGT S +SYL P Sbjct: 637 MLINRTPPQAVLLEITESLLMDANKSISTKLFQFRQAGVDIALDDFGTGYSSISYLKRYP 696 Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + S + TE + +II MAK + ++A+ I + L +MGCDY Sbjct: 697 TDFLKIDKSFVHSMTEVSNDKVLCEAIIVMAKKLGIKVVAEGIETQEQYHILQKMGCDYG 756 Query: 936 QDSHVASPLGFNSILKLLKER 956 Q A PL ++ LL++ Sbjct: 757 QGYLFAKPLEHHAFNALLQQH 777 >gi|51892837|ref|YP_075528.1| hypothetical protein STH1699 [Symbiobacterium thermophilum IAM 14863] gi|51856526|dbj|BAD40684.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 720 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 113/571 (19%), Positives = 231/571 (40%), Gaps = 18/571 (3%) Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 + V+Q + + + ER LA + V D + + +LG Sbjct: 152 TLFLAVVQDLTERKETERRLKESEERFRLAFEHAPIGVALLDAGGAILEVNRALCAMLGY 211 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 A + G L H + E +R D + W + Sbjct: 212 APAELAGRPLTDLAA-HPG-------AFPDPAHLQSAGPAPEVALRHRDGRTIWAQLSCA 263 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 ++ D +I DIT++K+ E ++ A D+LT + NR+ F L + + Sbjct: 264 ALNGWQSD-TAFILQLQDITDRKRYEEELVRLAMVDSLTDLANRRRFQQELEEAVTEAER 322 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 ++ ID+D +K IND LG GD+VL + + ++ D ARL G+ F ++ Sbjct: 323 TGR-SGALVFIDLDMFKHINDTLGHPAGDEVLRQVATILRSAIRPGDTAARLGGDEFALV 381 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 L + + + + E +++TAS+G + + E++ A++A Sbjct: 382 LRNADGARAAQVADRLLTAIRRARFGGAEAPVSLTASMGVVLFPEHGRSVRELMNRADMA 441 Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 + AK G + F + ++ + A+E L Y PI+ L + Sbjct: 442 LLEAKEGGRDSWAPFTPEGRWQREMQAQLLWRQRISRALEEDRFVLHYQPILDLRRNAVT 501 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 EAL++ I EFM +AE +I+ ++ ++LER R++ + + Sbjct: 502 RHEALLRMVGDGGELIFPGEFMAVAERFDLIQQVDRWVLERAVRELAELQRAGRRTVLE- 560 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N++ + L+D L ++ ++ P+ + L +E+ + + +++ +G ++ +G Sbjct: 561 -VNLSGRTLMDPVLPAVIRRGLTLRDVDPASLVLEITETAAISDVDQAERFIGEMKALGC 619 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914 L LDD G + L +L +P D +K +G+ + ++R++ + + + + Sbjct: 620 RLALDDVGAGFASLYFLKRLPVDYIKIDGAFIRNLPHDTADQHLVRALASVCRELGKQTV 679 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 A+ + ++ + G DY Q + P Sbjct: 680 AEFVDSPKTLQVVREYGIDYAQGYLIGRPGP 710 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 43/140 (30%), Gaps = 8/140 (5%) Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452 + + R + + + D + V + G + G + Sbjct: 35 AADVQRALARSEARLAGMLEITPAATVAVDADQRIVLFNDMAEQVFGYTREEVLGRPLDV 94 Query: 453 LPYIHINDRDNFRTILDSF----VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 L + R + F V RR + E R + I I ++ + Sbjct: 95 L--LPPETAARHRQHVTRFGLGPVRQRRMAERQELTARRKSGELFPAQIAIARVAMDDET 152 Query: 509 ILRYIGIANDITEQKKSLEG 528 + ++ + D+TE+K++ Sbjct: 153 L--FLAVVQDLTERKETERR 170 >gi|34557329|ref|NP_907144.1| hypothetical protein WS0940 [Wolinella succinogenes DSM 1740] gi|34483045|emb|CAE10044.1| conserved hypothetical protein [Wolinella succinogenes] Length = 713 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 140/596 (23%), Positives = 261/596 (43%), Gaps = 22/596 (3%) Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 L + G V I I T + Q E + + + ++ Sbjct: 126 YLLHSHSGQWSDGRKVKFQIAIDVTEQRLSPEGIMLEQN--QMLEVIKALLDATIEGLFI 183 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 +D + V + G +H ++ L +I + R+ + R + Sbjct: 184 FDRNQKCVYANHIALNLFGYTLEEVH--SKSILDFIALGFRNKVKR-----FSQNRDQPP 236 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 YE D ++IR + + G+ + DIT+ ++ + D+LT Sbjct: 237 YEVLGIKNDGSLFPIMIRGKAI--ELGEEKFRLSAVIDITKMREKENELFQIKRYDSLTS 294 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 +PNR+ D L L S + R ++ I +D++K ND G + GD +L + +R+ Sbjct: 295 LPNRRFLEDLLKKSLHTSHQNGCYR-ALLFIGVDRFKLFNDSKGHSFGDQLLYEIAQRLK 353 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVT 655 LAR G+ F ++L + S + A ++ K + P LL + I++T Sbjct: 354 AATASMGALARFGGDEFTLLLEDGSKSEEQIRRSARQSAESISKLLQAPFVLLGQSISIT 413 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCL 713 ASIG S+ + + ++K A AM+HAK +G N + F R ++ EDL Sbjct: 414 ASIGIISFKETARSPRTLIKYATSAMHHAKKKGCNTICFFEPLLQRRFEERLELQEDLRD 473 Query: 714 AVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A++ +L L Y +R+ ++ E +G EAL++W HP G IS EF+ +AEE I + Sbjct: 474 AIDKEQLELFYQKQMRVNEQAECMGAEALLRWKHPARGFISPLEFIPLAEEGGYIHLLGE 533 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L+ + + W+ + INI++K+ + +Q ++T P R+ + Sbjct: 534 WVLKHALQKLQKWQKDPQKSHWRLSINISAKEFEREDFISNVQKNFNQTPCPPHRLCIEL 593 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891 +E +++ +PE+S + L +GI ++DDFGT S L YL +P +K + + Sbjct: 594 TEGILIQDPEKSIQKILALASMGILFSIDDFGTGYSSLQYLKKLPIQELKIDRCFIQNIL 653 Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 E+ ++ ++I + K ++A+ + + +K+L MGC+ Q + P Sbjct: 654 EDEQDQILVDTMIGIGKKFNLNVVAEGVETQEQLKKLQSMGCELFQGFLFSKPSPV 709 >gi|13473025|ref|NP_104592.1| hypothetical protein mlr3504 [Mesorhizobium loti MAFF303099] gi|14023773|dbj|BAB50378.1| mlr3504 [Mesorhizobium loti MAFF303099] Length = 808 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 151/764 (19%), Positives = 299/764 (39%), Gaps = 57/764 (7%) Query: 224 MAWVVLGYISIDFGFLSKLVN---------LPSGELLIWRACSEIALSSSLIIFLFMYLH 274 +AW+++ S FG + + + + +++ + L Sbjct: 39 LAWLMIAATSTGFGIWATHFIAMLAFTPGIPSAYDPWLSVLSLAASVALTAAGMWIATLR 98 Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334 H VG G M+ + + +A +L Sbjct: 99 DEFEHHLVGGAVLGGGIAAMHYTGMAAFEVQGRIEWNLLMVAVSLLAGVTLGALALHVVL 158 Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDI---------------IQPALVGGLVLIV 379 R L + + + + I A +V Sbjct: 159 RRPSLTATSVGAVLLTLAICTLHFIGMGAVSIFPDSSIAISEYTIEPTSQAFAAAAATLV 218 Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 IL+ + + Q + + +R + + + D V+ + + G Sbjct: 219 ILVLSASALWI-DLRFRRQKL--EVDRMHGLANAAVEGLIVCD-GNRIVSANDSMGKLTG 274 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 + +++G L H + + E R R D + + Sbjct: 275 TLAATLNGTELRELFDEH---------TANDAASLAGQPWEAELRNR--DGTRIPVELIA 323 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 R + + G I + DI E+KK+ E IL A D LTG+ NR+SF RL + Sbjct: 324 RSI-DYCGKPHNVIAV-RDIRERKKAEEEILRLAHFDPLTGLANRRSFSSRLDMEIASMN 381 Query: 560 T-------DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 +++ D+D++K++ND+ G GD +L + +L+ +LARL Sbjct: 382 RIANGDTGVKGRHLALLLFDLDRFKEVNDLYGHGAGDAMLQKVATCAAGVLRHGQMLARL 441 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F II + + A ++ ++ + V+ASIG A + + Sbjct: 442 GGDEFAIIAPNLPDPQAAGRIAGSLLAAMREENRVAAGGGLVSASIGIAIYPLDAEDQTG 501 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 ++ +A+ A+Y AK G + F S D+ +++ +L AV E YLVY P + Sbjct: 502 LISHADTALYRAKTEGRDTYRYFEASMGAEARDKRIMEHELRQAVVRGEFYLVYQPQKEI 561 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 +VG EALI+W HP+ G++S + F+ +AEE I I ++L+ + W++ Sbjct: 562 SSGRMVGFEALIRWRHPERGDVSPATFIPVAEESGAIGQIGDWVLDAACEEAARWKN--- 618 Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850 P+ + +N+++ L + + + +T +P+R++L +E+ ++ + R+ L + Sbjct: 619 --PLTVAVNVSAVQLHNPNFSRKVHETLLRTGLAPTRLELEITETALVKDMPRALATLRQ 676 Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKN 908 ++ +G+ + +DDFGT S LS L PFD +K + S + AI+R+++ + + Sbjct: 677 VKSLGVRVAMDDFGTGYSSLSNLRAFPFDKIKIDASFIKAVDTNGQVAAIVRAVLGLGRG 736 Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 + ++A+ + ++K L C+ Q ++ P + L Sbjct: 737 LGLPVLAEGVETLGELKFLDAEACEIGQGYYLGKPAPIEAFDDL 780 >gi|262372151|ref|ZP_06065430.1| sensory box protein [Acinetobacter junii SH205] gi|262312176|gb|EEY93261.1| sensory box protein [Acinetobacter junii SH205] Length = 950 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 136/567 (23%), Positives = 252/567 (44%), Gaps = 20/567 (3%) Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 D ER LA + + ++ D + + P + GL + + Sbjct: 384 KDQERLKLAASVFEQASEGIFILDENFNYLEVNPKYEQLTGLDKQYILNKHLFEIT---- 439 Query: 459 NDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 + + L+ + ++ + EF+ + ++ I I + + + +L YI Sbjct: 440 --KQTKQHHLNFHLSILDTLHQEFEYEGEFQETYLSEKTCFLWIHINAVKDESDRVLNYI 497 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 GI +D +E+K + + D LT +PNR + +L L V+ ++I Sbjct: 498 GIVSDQSERKHQEQRLSYLTNYDTLTDLPNRFYYHQQLHQYL--VNEASIQHLAVIRLNI 555 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633 D+++ +N++L G+++L + +R+ ++A LS + F II I Sbjct: 556 DRFRALNELLSNQAGNELLKQVAQRLRISNIDALLVAHLSADDFAIIYEMSPLHPPIHQI 615 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 + ++ + P + ++E V+ SIG A + + +AE A+ AK GGN + Sbjct: 616 CNNIVEAFSKPFYIADQEHVVSISIGVAIYPEHGRQVDNLNTHAEQALTEAKRLGGNTIR 675 Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 + ++ DL A++N EL + Y P I + I G EALI+W HP G Sbjct: 676 YYSSERTNFVAKHTDLELDLRKAIQNKELVVYYQPKINTQNSNITGFEALIRWKHPTKGL 735 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 I F+ +AE +I I F+L AR + W+ I + +NI ++ +L +L Sbjct: 736 IMPDIFIPLAESTSLISDIGRFVLYEAARQLQVWQK-LGFVHIHVAVNIVAQQILRGQLL 794 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 + + A++ + ++L +ES + N E +++L L++ IS+ LDDFGT S L+ Sbjct: 795 QDIDAVLDQYSIGGENLELEITESAFLENTENVKMVLCALKERNISIALDDFGTGYSSLA 854 Query: 872 YLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930 YL P D +K + + ++ K+ AI+ ++I M K I ++A+ + E L R Sbjct: 855 YLTEYPIDILKIDRAFISKIGDPKQDAIVNAMIAMGKTIGLKVVAEGVETEQQRDYLKRQ 914 Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957 CD +Q A PL + L++ Sbjct: 915 NCDILQGYLFAKPLTASHATDYLQQHM 941 Score = 90.0 bits (222), Expect = 2e-15, Method: Composition-based stats. Identities = 65/462 (14%), Positives = 120/462 (25%), Gaps = 109/462 (23%) Query: 210 YMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII- 267 ++ V+ I ID+ + IW S I LS LII Sbjct: 4 FIYTDQINYPNHIRLFVVSVIFIILIDYFLFGFFYSFDLNIFSIWTISSLIVLSIFLIIC 63 Query: 268 -FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT------------------- 307 F + R K CI L + Sbjct: 64 NFSLKHYTSVRHAKKTNLTFQLICLCIGSLLGVGSVVISQLLTKDVPHLSHSHILTLTAL 123 Query: 308 -------------ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 R L + ++ + + L A+ F+ + Sbjct: 124 LLTSSHIISLTFLTQHIRYFLLFFIPSVLPLVLSQIINRDQEHTLFYVAYYFSFVATLLC 183 Query: 355 WMAITKRL------------------DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 A K ++ L L V Q Sbjct: 184 AHATFKIHKRFFQVLEKNKQLIDVAEQHNQWTEELCQQLQREVNKSKDIEAQLQFNNHLL 243 Query: 397 SQGIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLA 441 Q + ER + A +G W+W++ +RV T + + Sbjct: 244 EQKVRERTYDLTKMNERLEEHRQNLAFAHETAGIRPWEWNLEENRVGVTNSHQKEVTRNS 303 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 +H +D + + + S + + R + FR++ ++ + W+ + Sbjct: 304 ----ENHYELLSKIVHPDDAERVKNTIYSHLCGQTKRYEETFRIKRSNGDWSWIHDVGQV 359 Query: 502 MSN--SNGDILRYIGIANDITEQKKSLEGILCNAF------------------------Q 535 + +G LR +GI DI ++KK E + A Sbjct: 360 IQRNPKDGTPLRMVGIHRDINQEKKDQERLKLAASVFEQASEGIFILDENFNYLEVNPKY 419 Query: 536 DNLTGI-----PNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + LTG+ N+ F + +L + ++D Sbjct: 420 EQLTGLDKQYILNKHLFE------ITKQTKQHHLNFHLSILD 455 >gi|85714378|ref|ZP_01045366.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A] gi|85698825|gb|EAQ36694.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A] Length = 761 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 142/696 (20%), Positives = 284/696 (40%), Gaps = 41/696 (5%) Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 RW A+ + ++ + + T ++ + Sbjct: 75 EAARWEARYQIGAVLYAVALGAWCAIALLMTDDAVAHM-----ICISVTTGYVAAGAGRA 129 Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 Y R + + I + + A+ R D I AL+ L + + T +Q + Sbjct: 130 YGRPWIF---HLQILLTCGPMAGAMMLRADPYYIGMALLTVLYFLGLERITTRLQAIFVR 186 Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN- 451 ++ + + A+ + +D ++ L + +H + Sbjct: 187 ALIAREREAALASQFDTALNNMPHGLCMFDADGRLGVMNYCFGEMMHLPADFVHRNVGAS 246 Query: 452 -------WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504 I + + L++ + A + +PM+ Sbjct: 247 ELIAACVVAGAISSENGRAINSELENSQAGAMVTSDADLEQGRA------LSWTFQPMAG 300 Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564 + + DITE++K+ I A D+LT +PNR SF D + +L+ S TD + Sbjct: 301 G-----GTVVLVEDITERRKAEARISHLARFDSLTDLPNRLSFRDEIERLLE-SPTDRSR 354 Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624 ++ ID+D++K+IND LG GD +L + R+ +L+ D +AR G+ F + + Sbjct: 355 LSALLFIDLDQFKQINDTLGHPCGDRLLCIVADRLRGMLRPEDFVARFGGDEFVVFQQNI 414 Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684 + + A + + + + + + + ASIG A + T+ +LK+A++A+Y A Sbjct: 415 QSPEEAAALSRRIVERLTERYEVDRHLVEIGASIGIALTSP-GATADNLLKHADMALYRA 473 Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742 K G FR + ++ DL A+ N E L Y P++ L I+ EAL+ Sbjct: 474 KADGRGTFCFFRSEMAETVERRRVLELDLRKALANEEFELFYQPLVNLRSGRIMACEALL 533 Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802 +W+HP G IS + + +AEE+ +I + ++L + + + W + + + +N +S Sbjct: 534 RWNHPTRGMISPMDIIPVAEEMGLILDLGRWILRKACMECMMWPEA-----VSVAVNFSS 588 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 + ++ ++ + + R+++ +ES ++ N E + L +L G+ ++LDD Sbjct: 589 QQFHQRDVLSEVRYALEVSGLPAHRLEIEITESSLLRNTEWTHDALTQLHSAGVRISLDD 648 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGE 921 FGT S LSYL P VK + S + G R +LR + ++ ++ ++ + I Sbjct: 649 FGTGYSSLSYLHNFPLQKVKIDRSFLEGIDTDRPLTLLRGVARLSADLGMAVVVEGIETN 708 Query: 922 IDIKELTRMG--CDYIQDSHVASPLGFNSILKLLKE 955 ++ L Q + P+ I +LL+ Sbjct: 709 EQLE-LISADSTVTEAQGYLFSRPVPAARIRQLLES 743 >gi|119468623|ref|ZP_01611675.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7] gi|119447679|gb|EAW28945.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7] Length = 1485 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 127/556 (22%), Positives = 265/556 (47%), Gaps = 13/556 (2%) Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 ++ E+ + A D + D + + + + ++ I Sbjct: 923 RANEEQAKILGEAFSQINDWLLILDDHLMPFSANNSFIRTFSDSEEFTNISPKLFIKSIG 982 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + F IL + ++ A + H + I + ++ S ++ Y+ + + Sbjct: 983 KENCKEFAKILKKL--QPTENWHIDTLIKTAKSSKHPVHINVTAVAKSTTEVSYYVIVIS 1040 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 D+TEQK++ + A D LT +PNR + + + N ++ ID+DK+K Sbjct: 1041 DLTEQKRAENELRYLANYDALTKLPNRSLMYQEIEEAIKQA-ESSNTHCALLFIDLDKFK 1099 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 +ND G AVGD +L ++T R+ +L L R SG+ F +++ + + + + + + Sbjct: 1100 PVNDSFGHAVGDKLLCNITERVSNILNENAQLGRQSGDEFLVLIKNVESQDSLKETVMLI 1159 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695 K +A + + + I ++ASIG A + IT+ +++NA++AM AK G N F Sbjct: 1160 SKELANKVMIEDFAINISASIGVALYPFDAITTDILIRNADVAMMQAKQNGRNGFSFFSD 1219 Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755 ++ ++M++ DL AV+ + Y PI+ + I G+E L++W + + +S + Sbjct: 1220 EMNEQIKQKLMLENDLKDAVKADLFFNHYQPIVDIEARTINGVELLMRWKNKE-QFVSPA 1278 Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815 F+ I+EE +I+ + L+R ++ ++ + +I +N++ K +L + E +Q Sbjct: 1279 VFIPISEETGLIERLTELALKRALIELAPLLNENPL--FYISLNLSPKHILKENITERLQ 1336 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +++ P +++L +E++++ + ++ L +L+ G L LDDFGT S L+YL Sbjct: 1337 CILADAGILPKQLRLEITETILLEDKLKAANQLQKLKAAGFKLLLDDFGTGYSSLTYLSQ 1396 Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 P + +K + S + E +I+++II +A+N+ IA+ + ++ L GC Sbjct: 1397 FPINVIKIDQSFVNSIGEDKGDESIIKTIISLAENLNLYCIAEGVENRDQMEFLVNAGCH 1456 Query: 934 YIQDSHVASPLGFNSI 949 +Q + A P+ ++ Sbjct: 1457 VLQGYYFAKPMSAEAL 1472 Score = 91.9 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 10/183 (5%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVI--QHVLATGYFSQG---IFSDGERQSLAVL 412 ++ + + +IV+L F + Q+ Q + ++ LA+ Sbjct: 752 LSMNVAYAPWKSPFAIFTYIIVMLSLFALFFWQYRNRQNVIQQAHTDTINSKKQTELALK 811 Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472 + +WD+ V T I LG + I + IH +D+ F T F+ Sbjct: 812 NNKSGIWDFRFKDGSVNTLRGIE--LGYENLEERVSIELFYSIIHPDDKRRFETKWQGFI 869 Query: 473 G--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGI 529 + Q +R+R + Q+ W + + ++ G L GI +ITEQ+ + E Sbjct: 870 SKKSKNKNWQLTYRLRHKNGQWLWYQDTGQIIFDTQTGKPLYVSGIYTNITEQRANEEQA 929 Query: 530 LCN 532 Sbjct: 930 KIL 932 >gi|13471907|ref|NP_103474.1| hypothetical protein mlr2027 [Mesorhizobium loti MAFF303099] gi|14022651|dbj|BAB49260.1| mlr2027 [Mesorhizobium loti MAFF303099] Length = 867 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 134/617 (21%), Positives = 260/617 (42%), Gaps = 42/617 (6%) Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS-QGIFSDGERQSLAVLGSGDIVWDW 421 + + L ++++ V + + + R LA+ SG VW+ Sbjct: 256 PKNEWALRSLMLLAGALVVLPIMVAGRLFGERQKNYAELRRLSGRLELALEASGIGVWEH 315 Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D+ + + + I G ++ +W IH D R D ++G Sbjct: 316 DLTTNEMVWDDRVNEIYGKSADGKPRGYDDWAQAIHPEDLARARQDFD-LAAAKQGPYSS 374 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--------------------- 520 ++R+ D + R + G + IG D+T Sbjct: 375 QYRLLRPDGTVRHVRTRATYFQDIGGTP-KLIGAEWDVTSDVLLNENLIRERQLTESKNA 433 Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E + I A D+LTG+PNR+ + L + R ++ +D+D++K+IN Sbjct: 434 ELNLAKAHIEYAALHDSLTGLPNRRYLDELLAE-----NGKPDRRTALLHLDLDRFKQIN 488 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG A GD +LV ++ I + D +AR+ G+ F ++ ++ ++ A + + Sbjct: 489 DTLGHAAGDAMLVHASKVIQANVGRDDFVARIGGDEFVVVSHGLDD-DGLSALAHRIIED 547 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P++ SIG A+ ++ + ++L NA+LA+Y AK RG N E F Sbjct: 548 MRQPVDYRGHPCRFGVSIGIAA--NNGVDVKQLLVNADLALYRAKSRGRNRYEFFNEELQ 605 Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 I +++ +E +E Y P EIVG+EAL +W HP+ G ++ ++ Sbjct: 606 SEIVRTKQIADEILGGLERNEFVAYYQPQFDASTLEIVGVEALSRWKHPRRGILAPDAYL 665 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEEL ++ I+ +L+ + W P + +N++++ L D +L EG++ L Sbjct: 666 KVAEELNVVALIDRIVLKHALENFERWSRSHLNIP-RVSVNVSARRLEDRDLIEGLRKLA 724 Query: 819 SKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + ES+ + N + + ++++GI + +DDFGT + + L + Sbjct: 725 ----IKAGTVSFELVESIFLDENDDLVTWNIDHIKELGIDIEIDDFGTGHASIVSLLKLR 780 Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + L+T T + ++ SII + K++ ++A+ + + L +GCD + Sbjct: 781 PRRLKIDRQLITPITGSMAQRHLVASIIEIGKSLGIEVVAEGVETMEHARILKELGCDIL 840 Query: 936 QDSHVASPLGFNSILKL 952 Q P+ + Sbjct: 841 QGYLFGRPMEAKAFKAF 857 >gi|13506640|gb|AAK08640.1| ScrC [Vibrio parahaemolyticus] Length = 774 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 9/442 (2%) Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 I +K S + + A D LT +PNR +RL L ++ + + VM ID+D +K+ Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGS-KVLVMFIDLDHFKQ 391 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND +G VGD++L +R+ + + D+LAR+ G+ F +++ ++ A ++ Sbjct: 392 INDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 451 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + + P E +T S+G + + + ++L A++AMY K G + + + Sbjct: 452 SAFSEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 511 Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 + + ++ L A+ N L + Y PII L +IVG EAL++W+ K+G ++ E Sbjct: 512 MNQDLQRYLDLESRLRNAISNQLLEMYYQPIIELKSGKIVGAEALMRWNDEKFGFVNPEE 571 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815 F+ IAE+ +I + F +++ W+ P+F+ +N +S + L ++ Sbjct: 572 FISIAEKNGLIHQLGEFAIQQACYQASQWQSI---SPLFVSVNFSSVQFRYCDRLLAFIR 628 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 + ++ + + +ES++ + + +L LR +G LT+DDFGT S LSYL Sbjct: 629 QSLEESGLPAEQFDVEVTESLLFNHDDELVDMLDNLRALGTKLTIDDFGTGYSALSYLQK 688 Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 PFD +K + S M + ++ II MAK + I+A+ I + + L + C+ Sbjct: 689 FPFDRLKIDRSFMQNVFENDSDRELVNVIIAMAKALRLKIVAEGIEEQRHVDYLNELNCE 748 Query: 934 YIQDSHVASPLGFNSILKLLKE 955 + Q H + P+ +LL + Sbjct: 749 FGQGFHYSRPVPAKEFEQLLNQ 770 >gi|239993275|ref|ZP_04713799.1| sensory box/GGDEF/EAL domain protein [Alteromonas macleodii ATCC 27126] Length = 991 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 144/613 (23%), Positives = 253/613 (41%), Gaps = 23/613 (3%) Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410 + + + A LIV L ++ Q S A Sbjct: 388 VLPAEITLYMPHAPLRSPLAYTIYAALIVSLFVAYLLSRQRQLFRL-QKAQQQVTLFSDA 446 Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470 + D V +D + V P + G + L + L+ Sbjct: 447 FRQTRDWVLIFDKEKRLVAANPAFEHVFGFNNKEPLPKQLARLYLRYP--------TLNR 498 Query: 471 FVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + + E + AD + + ++I I +S + Y+ + +DITEQK Sbjct: 499 HLSGKLPEMQGGDFWKDEAVIDGADGKRYDVLIDITAVSGESNTAEHYLIVISDITEQKN 558 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + +L A D LTG+ NR LDRL + L+ ++ R VM +D+D++K IND LG Sbjct: 559 AERKLLKIATYDGLTGLVNRTLLLDRLEHAIGLARHHEH-RVAVMFVDLDRFKGINDSLG 617 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD +L + R+ L+ +ARL G+ F I++ N + ++ F + +S+ P Sbjct: 618 HDYGDKLLRIVANRMRNLVAESGTVARLGGDEFVIVIEEVNANDDLSSFVAQIIESVETP 677 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRS 702 I+L E + V+ SIG A + +E++K A++AMY AK G + ++ Sbjct: 678 ISLAEEVLRVSCSIGVAFYPEDASEPAELIKQADVAMYTAKKDALSGFTYFTTDMNERAK 737 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 R+ ++ + A + + Y PII +G+E L++ +F+ + E Sbjct: 738 TRLQLENKVKRAYSDDCFFNHYQPIIDARTNTTIGVELLLRGKLDNEPLFP-DQFIPVLE 796 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 EL I + + R A D+ SW Q F+ IN+++ G+ L+ + Sbjct: 797 ELKYIIEVTRQAMRRAAEDLSSWYSQGFTG--FVSINLSALHFKTEFDLTGVLTLLDEFN 854 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + +E V+M + + + + R K G L LDDFGT S LSYL P +K Sbjct: 855 LPKEAFRFEITEGVLMDDSDNALRQINRFVKEGFVLALDDFGTGYSSLSYLKRYPLSVLK 914 Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + S + A++ + I +A N+ + +A+ + + +EL C + Q Sbjct: 915 IDKSFVNEMAPGNANEALVTTTITLANNLNMSCVAEGVETKAQAEELIGKACYFHQGYFY 974 Query: 941 ASPLGFNSILKLL 953 A P ++ LL Sbjct: 975 AKPCTAEEVVPLL 987 >gi|296156788|ref|ZP_06839626.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] gi|295893387|gb|EFG73167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. Ch1-1] Length = 667 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 132/542 (24%), Positives = 248/542 (45%), Gaps = 11/542 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + G+ ++ G W ++ D + F R + Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIIGRN-VWALFMSTEDGAASSQNIAGFF-NRGVSYEV 186 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E RV+ + ++ S S + I DITE++ + E + A D+LTG+ Sbjct: 187 ERRVKTVHGERLFLFRNKFVHSGSGVEEQFLICSGTDITEERLAQERLTELANTDSLTGL 246 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 NR + DR+ ++ +A V+ +D+D +KK+ND G GD ++ ++ I Sbjct: 247 ANRNAIQDRIRAAIEDAA--PGEAVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSAAISL 304 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D LARL G+ F I+L ++ + ++ A + + + P +L E+ SIG A Sbjct: 305 CLNEGDTLARLGGDEF-IVLAAKGTAHELEVTAQRILERMRTPFSLGLVEVYTGCSIGIA 363 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 + + ++++A+ AMY AK G F R + + + +L ++ + Sbjct: 364 LYPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGIDEGQ 423 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L L Y P + L + G EAL++W+ P+ G I +EF+ AEE +I + +++E Sbjct: 424 LTLHYQPKLSLATGAVQGAEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMET-- 481 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + + +A+ + I IN++++ L+D + + P I L +ES ++ Sbjct: 482 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFSEALQHANLDPCLIDLELTESCLIE 541 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIA 897 + + L+ + R++G + LDDFGT S LS LG IP D +K + S + + K A Sbjct: 542 DETAAIDLIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADPKAQA 601 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++RS++ +A+ + ++A+ I E + + +G DY+Q + + L++R Sbjct: 602 LVRSMVVVAQELNFKVVAEGIETESEELFMKGLGVDYVQGFLYGQAMPAAEFERWLQDRQ 661 Query: 958 PL 959 L Sbjct: 662 KL 663 >gi|241662019|ref|YP_002980379.1| MHYT sensor-containing diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12D] gi|240864046|gb|ACS61707.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Ralstonia pickettii 12D] Length = 687 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 118/432 (27%), Positives = 214/432 (49%), Gaps = 7/432 (1%) Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + A DNLT + NR DRLT + + + R VM +D+D +K +NDV G Sbjct: 259 KELAYLALHDNLTKLSNRVLLEDRLTQAIRTADR-EKRRFAVMFMDLDGFKAVNDVYGHH 317 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 VGD +L+ + +RIG ++ D +AR+ G+ F +L ++ A A+ + + P Sbjct: 318 VGDLLLIDVAQRIGARVRQQDTVARVGGDEFV-VLAYVDDPEDAGTLADALLEVVREPFM 376 Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDR 704 E+ V+ SIG A + ++L NA+ AMYHAK G N F S + Sbjct: 377 AGGHELRVSTSIGIAVYPGDGGNQHDLLTNADAAMYHAKGLGRNAYSFFEPSMNADVHQQ 436 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764 + + +DL AVE EL L Y P + I+G+EAL++W HP+ G + + EF+ +AE+ Sbjct: 437 LQLVQDLRRAVERHELVLHYQPKFNAPNGPIMGVEALVRWQHPQRGLVPADEFIPLAEKT 496 Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824 +I + ++L+ R + W+ + + +N+++ L + ++ +++ Sbjct: 497 GLIVPLGAWVLDEACRQMAQWQRE-GHSGWSVAVNLSALQFGHAALIDTVRETLARHALD 555 Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884 P + L +ES M + + S +L +L +G+ +++DDFGT S L YL +P +K + Sbjct: 556 PRSLMLEITESTAMRDVDASLQILQQLDAMGVRISIDDFGTGYSSLLYLKRLPASELKID 615 Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + + AI+ +I+ + + + I+A+ + LTR+GC +Q + Sbjct: 616 RGFVRDLAHDTEDAAIVSAIVALGQTLNLRIVAEGVETAEQQAFLTRLGCHSLQGYLLGR 675 Query: 943 PLGFNSILKLLK 954 P+ S+ + Sbjct: 676 PMTAESLSAAMA 687 >gi|327483453|gb|AEA77860.1| C-di-GMP phosphodiesterase A-like protein [Vibrio cholerae LMA3894-4] Length = 684 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 131/572 (22%), Positives = 254/572 (44%), Gaps = 32/572 (5%) Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454 + + + +L D + + D ++ P A +LG Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182 Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 +I + F + L S + + R +E +++ + + Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234 Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + D E K+ +A D+LTG+ NR F RL + + Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 ++ +DID +K IND LG +GD V+ + R+ LL +L L G+ FG+IL ++ Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 A + I P +L + SIG + + +L+NA+ AMY AK R Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405 Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N + F +++ R+ ++ +L A++ + L + Y P + D I G EAL++W Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HP G IS F+ +E+ +I+ + ++ + + W + P + INI+ + Sbjct: 466 HPVEGYISPGAFIPGSEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + +L + ++ L+ T P+ I +ES VM + E ++ +L ++K+G +L++DDFGT Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S L+YL P D +K + + ++ K++ ++ +II + +++ T++A+ + + Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 L+ + C IQ H P + + +L + Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676 >gi|115526721|ref|YP_783632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] gi|115520668|gb|ABJ08652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris BisA53] Length = 1223 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 138/564 (24%), Positives = 248/564 (43%), Gaps = 33/564 (5%) Query: 399 GIFSDGERQSL-------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-HGPIR 450 + ER + A+ + D V T + GL + G Sbjct: 663 ELAQQAERLARTNMQFDAALTNMSQGLAMLDSQGRLVLTNKRFQEMYGLDEEQLKPGTPA 722 Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-RAADNQFHWMIIRIRPMSNSNGDI 509 L + + + + +G L R+ + D+ + RI + + Sbjct: 723 EDL-------VERYVPLFAASKSMVKGYLA---RLSKDVDSVIPLLDGRIIRIRRAQTSD 772 Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569 ++ DIT Q++S I AF D LT + NR + L+ S +V+ Sbjct: 773 GGWVATHEDITAQERSARQISYLAFHDGLTELANRAELNKQGHLALESSDR----PISVL 828 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-SL 628 +ID+D++K +ND G A GD +L + R+ L D++AR+ G+ F I+ + Sbjct: 829 LIDLDRFKAVNDTFGHAAGDRLLQLVAIRMRALAGPKDLVARVGGDEFAILQAPCPDQRE 888 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A + + P +L ++ ++ ASIG A + + +++ A+LA+Y K G Sbjct: 889 AAIALASRTIEVLRQPFDLGGKQASIGASIGIAVRSPQTVRFDDLIHQADLALYEIKSGG 948 Query: 689 GNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N + S + +R+ ++ DL A+ ++ L Y PI+RL D + G+EAL++W H Sbjct: 949 RNDCLLYEDSLGARAHERLELENDLREAIAGGQMELHYQPIVRLTDLRVCGMEALVRWRH 1008 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P G +S F+ +AEE +I + F++ + D SW D + + +NI+ + Sbjct: 1009 PVRGLLSPDLFIPLAEETGLIVQLGEFVVNQACHDAASWPDH-----VKVAVNISPTHIK 1063 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 L + + + + R++L +E+V+M E L +LR +GIS+ LDDFGT Sbjct: 1064 GRGLLGTVTLALLNSQLATERLELEVTETVLMERDEDMLAELHQLRALGISVALDDFGTG 1123 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S LS+L FD +K + S + TE AI+ ++ +A+ ++ A+ + E + Sbjct: 1124 FSSLSHLRMFSFDKIKIDRSFVAEITERSDSAAIVCAVTGLARTLDIVTTAEGVETEQQM 1183 Query: 925 KELTRMGCDYIQDSHVASPLGFNS 948 + L GC +Q P + Sbjct: 1184 QILRAAGCTQLQGYLFGRPKPADQ 1207 Score = 80.0 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 6/131 (4%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYI 456 Q + A+ + IV D+ + I G + + G L + Sbjct: 30 QLAADELGHLVAALDQTA-IVAITDVKGRILHANDKFCEISGYSRDELLGQDHRLLKSGV 88 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H + + FR + G EF RA + +W+ I P + G ++ Y I Sbjct: 89 HPD--ELFRDMYRVIA--GGGVWHGEFCNRAKSGRLYWVDTTIVPRLDGRGKVVGYTSIR 144 Query: 517 NDITEQKKSLE 527 DIT++K E Sbjct: 145 VDITQRKTMEE 155 Score = 59.6 bits (143), Expect = 3e-06, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 8/142 (5%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG------SM 445 + + + + GD + D V + P A ILGL + Sbjct: 149 QRKTMEEALRRSEQLLRSTMTALGDGLVIQDRDGRIVASNPAAARILGLGADPCGSTALF 208 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 H D + + +R D W+ I + Sbjct: 209 DPCWVAIKEDGH--DFPAVEHPAQVTLATGEPQRDVVMGLRKPDGAVSWVSINSVAILGH 266 Query: 506 NGDILRYIGIANDITEQKKSLE 527 + + DIT ++++ E Sbjct: 267 DDCPDSVVTSCADITAKRQAEE 288 >gi|331012469|gb|EGH92525.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 951 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + ++ A D+LT +PNR + L I+ + + +V+ ID+D++K +N Sbjct: 503 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 561 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ + I A + + Sbjct: 562 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKTLANHVVE 621 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL +++ V+AS+G A++ + +LKNA+ AMYHAK G N+ + + + Sbjct: 622 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATM 681 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A++ E L + P + L D I GLEAL++W+HP+ G +S +EF Sbjct: 682 NESLVRRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 741 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + +++ + I SW ++ N+ + I IN++ + L L E ++ + Sbjct: 742 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 800 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 801 VKGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 860 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + + L GCD + Sbjct: 861 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 920 Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960 Q + P+ ++K L Sbjct: 921 QGYLFSKPVIIEECASMIKSSRSLS 945 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ AV + +++ + I +A +L + G + +L+ ++ Sbjct: 139 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 197 Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434 A ++ S L A+ IV + Sbjct: 198 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 256 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492 + + + I++ + E R+ + Sbjct: 257 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 308 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550 W I P+ + G + +YI I DIT +K+ IL N+ + NL + +Q+ + Sbjct: 309 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 368 Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572 L L + + ++V+D Sbjct: 369 STLGELAALTAAQGLTLSKAALLVVD 394 >gi|311108782|ref|YP_003981635.1| signaling protein [Achromobacter xylosoxidans A8] gi|310763471|gb|ADP18920.1| signaling protein [Achromobacter xylosoxidans A8] Length = 687 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 124/432 (28%), Positives = 214/432 (49%), Gaps = 7/432 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ E ++ A D LT +PNR DRL ++ + V+ D+D +K +ND Sbjct: 255 EANEELVQLALHDTLTKLPNRILLEDRLEQAIESATRRKGY-FAVLFFDLDGFKAVNDAY 313 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L+ L +RI L+ D +ARL G+ F I+L A+ A + +IA Sbjct: 314 GHHTGDALLIDLAQRIRLTLRTQDTVARLGGDEF-IVLSEVVEPTDAANVADRLIDAIAR 372 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P+ + E+ VT+S+G A + ++ + +L NA+ AMYHAK GG F S Sbjct: 373 PVTVYGHEVMVTSSVGIAIYPNNGQDTHALLTNADAAMYHAKRLGGTGYSFFEPSMNADA 432 Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 I+ DL LA E ++L L Y P I+G EAL++W+HP G + +F+ A Sbjct: 433 HEQIELLHDLRLAQERNQLVLHYQPKYEAPAGPIIGAEALLRWNHPTRGLVGPDQFIPTA 492 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I +I +++ R + W + + +NI++ L E +++ + + Sbjct: 493 EKTGLILSIGEWVINEACRQMREWINA-GQGHWTVAVNISALQFAHASLVETVRSALERH 551 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P+ + L +ES M + E S +L RL +G+++++DDFGT S L YL +P + Sbjct: 552 GVPPACLTLEVTESTAMRDAEASLAVLKRLSNLGVTISIDDFGTGYSSLLYLKRLPATEL 611 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + + AI+ +I+ +A+ + I+A+ + K LT +GCD +Q Sbjct: 612 KIDRGFVNQLENDNEDAAIVSAIVALAQQLNLRIVAEGVETPAQQKFLTGLGCDSLQGFL 671 Query: 940 VASPLGFNSILK 951 + P+ L+ Sbjct: 672 LGKPMPATEFLE 683 >gi|183221125|ref|YP_001839121.1| putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911216|ref|YP_001962771.1| signal transduction protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775892|gb|ABZ94193.1| Signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779547|gb|ABZ97845.1| Putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 702 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 148/561 (26%), Positives = 264/561 (47%), Gaps = 13/561 (2%) Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460 + + Q A+ + IV D A G + G L Sbjct: 142 LKEIQLQKFALDQAN-IVSITDANGIITYVNEAFANATGFPVTELLGQNHRILKC----- 195 Query: 461 RDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 ++ + + ++ + E D W+ I P ++G + +YI I +D Sbjct: 196 QNKTKEEWEKIWESIHKGKVWRGEILNTKKDGSSFWVDTTIVPFIGTDGSVFQYIAIHHD 255 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT++K + E + +AF DNLTG+PNR +L R+ + ++ P + I+ID +K+ Sbjct: 256 ITDRKLAEEQLTHDAFYDNLTGLPNRALYLARIEQKIFSYNIKNDGYPILFCINIDNFKR 315 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IN LG GD +L+ ++R+ + ++ RL + F I+L + + D+A + Sbjct: 316 INHSLGNEAGDKILIIFSQRLKQFSDKEAVITRLGADNFSILLNHLLSIEEAVDYAYRLL 375 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + I PI + EI +TAS G + + + +L+NAE+AM+HAK + V F + Sbjct: 376 EYIGDPIPIGGYEIYLTASCGISGFGLGGKEADVLLRNAEIAMFHAKSQKVGLVSVFNQA 435 Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 ++ DL A+ +E+ + Y PI+ L +I EAL++W HP+ G +S +E Sbjct: 436 MQERIHFQLEIQNDLKKALNQNEISVFYQPILDLKTNKIGHWEALVRWRHPQRGMVSPAE 495 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AE+ +I I F+LE+ A I + + PI I +N++ + D + + Sbjct: 496 FIPLAEDSGLIVPITRFVLEQSANVIEEVQIKNGK-PISIAVNLSPQVFFDQNIFHWIVD 554 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 L + + +++ +ES+ M N + +L L IG+ + LDDFGT S LSYL + Sbjct: 555 LHKQRNIPYTSLQVEITESLAMKNLSETVPILSNLIDIGVKVALDDFGTGFSSLSYLEKL 614 Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +K + S + K +L SII MA ++ +++A+ + ++ L CD Sbjct: 615 PLSILKIDKSFLNNVHVGSKESFLLISIINMAHDLGYSVVAEGVEELEQLELLKSYQCDE 674 Query: 935 IQDSHVASPLGFNSILKLLKE 955 IQ ++ P+ F I+ L + Sbjct: 675 IQGYWLSKPIPFPEIIPFLDQ 695 >gi|153011143|ref|YP_001372357.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC 49188] gi|151563031|gb|ABS16528.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC 49188] Length = 786 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 141/790 (17%), Positives = 293/790 (37%), Gaps = 57/790 (7%) Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSM------LIPTFAMAWVVLGYISIDFG 237 TV + + ++ + + R + A+A + + + Sbjct: 9 TVQHDQPFVVLAASISFASMFAFFLLLVRARECTESRRDNWLAISALAGGLGVWATHFVA 68 Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297 L+ + A++ +L+ + + + ++ A+ F Sbjct: 69 MLAYRGTVAIEFD-FTITVLSAAIAVLGFWLSVRFLNGKAFKYVLIAAISATLSIAAMHF 127 Query: 298 CMSFYY----------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347 P + L + ++ M+ V I A + Sbjct: 128 TGMSAIRAAADVHYDLPPILIGSIISILLLLAAFWFVMNTAGWMRVLLPTVGGILAVCTL 187 Query: 348 FIWFIGLWMAITKRL-----DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402 + + I + L+G + +V ++ T I V Y + Sbjct: 188 HFTAVASTELVPNPTLPAADPLGIGRLWLIGAIAAVVSIVALTTIIAVFVDRYMTD---- 243 Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 + D + V + ++ + ++ G + + D Sbjct: 244 ----LKGFANATLDGLAVVR-DGGIVEMNARFSDLMRRSEKALVGVAPD--TLLLAADGL 296 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + R + R+ G + + D+TE+ Sbjct: 297 PVCASRPEAIEA-APRFPNDERI----------FELAVHTIEYQGRPCEVLAV-RDLTEK 344 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 + + I A D LT +PNR F +RL + + + V+ +D+D++K +ND+ Sbjct: 345 RTAQRQIEHMARHDTLTDLPNRMFFEERLANAVARRSREP---FAVLALDLDRFKAVNDI 401 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G A GD VL +++ + + D AR+ G+ F I+ + + + + Sbjct: 402 FGHAEGDRVLKTVSSILKRSINGIDTAARIGGDEFIILQVGVPQPKGARKLSEKILDTFR 461 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701 +N + V SIG A + + + + A++A+Y AK G V + R Sbjct: 462 SELNTVLDPTAVGVSIGVAVYPNDGKDAEAIRHAADIALYRAKTEGRGMVAFYSPEMDRE 521 Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +R ++ DL A+ ++ + Y P+ D G EAL++W+HP+ G I F+ I Sbjct: 522 IRERRQMEADLRHAMVRGQISIAYQPLFATADGSCTGYEALVRWNHPERGQIPPEVFVPI 581 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEE +I + ++L R W + I +N++ L + + +++++ Sbjct: 582 AEETGVIVPLGEWVLREACRTAAGWEKH-----LTIAVNLSPVQFRLINLPDTVSSVLAQ 636 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T P+R++L +E+ +M + + LL R++K+G+ + +DDFGT S LS L PFD Sbjct: 637 TGLDPTRLELEVTEAALMKDRLTTLELLRRMKKLGVRIVMDDFGTGYSSLSNLQSFPFDK 696 Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S +T AI+R+I+ + ++++ ++A+ I + + GC+ +Q Sbjct: 697 IKIDRSFITSMETDVSARAIVRAIVGLGRSLDLPVVAEGIETFDQHRMVIEEGCEQVQGF 756 Query: 939 HVASPLGFNS 948 P + Sbjct: 757 LFGRPANAPA 766 >gi|83644378|ref|YP_432813.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83632421|gb|ABC28388.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 928 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 142/598 (23%), Positives = 269/598 (44%), Gaps = 17/598 (2%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 I + + L +++ F + + S R + D Sbjct: 333 RSAIIEQMTPEMALAGLIVLFAALIQRYFLTAGQ--LESSQRRYRQMFEHCDAVQIILDP 390 Query: 424 VRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482 ++V P G +S M + + + + + + Sbjct: 391 TNNKVIDANPAACDFFGFSSEMMGNISAS--RLFLSENNEMLGENWLPSLQSGKTVIAA- 447 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 R DN+ + + + + + L I +DIT++K+S E I A+ D LT +P Sbjct: 448 ---RRGDNRSSLVEMYVSDIKDKASSYLYLI--VHDITDRKRSEEQIRLQAYYDPLTRLP 502 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR + L +++ + R V+ ID+D++K++ND LG VGD +L ++ R+ Sbjct: 503 NRSYLFEHLNSLIASHKR-EQARLAVLFIDLDRFKQVNDNLGHGVGDKLLQQVSTRLKSR 561 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 L+ D+LARL G+ F ++L A + + +A ++ + E+ + ASIG Sbjct: 562 LRESDMLARLGGDEFTVVLPHLREETDAIHVAKMLLQQLADSFSVGDYELHIGASIGVTL 621 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSEL 720 + +S ++KNA++AMY AK G N F + R+M++ D+ A +N + Sbjct: 622 FPKDGEDASTLIKNADIAMYKAKDNGRNQYRFFEERMNEAVASRLMLEGDIREATQNEQF 681 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 +L + PII L + + G EAL++W HP++G + EFM IAEE I I+ ++L+ Sbjct: 682 HLEFQPIIDLKNMRLAGAEALLRWLHPRFGELHPREFMSIAEETGNIVQISEWLLQNALN 741 Query: 781 DIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 W+ FI +N++ + L+ ++ + + +I ++ PS + L +E ++ Sbjct: 742 LAAEWQYSRPAGQQPFIAVNMSRRQLISSQHIKRWRDIIRQSEVPPSSLVLELTEHNLLN 801 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897 E SR L L ++G+ L+LDD+G S L+ L +P +K +G L+ K Sbjct: 802 EFEESRRCLIELHQMGVRLSLDDYGHGASSLTLLKDLPISMLKLDGLLIRNLGRQTKEEV 861 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 ++ +++ M + ++ I+A+ + + L GCDY Q + P + +L++ Sbjct: 862 LMDALVKMGRAMDMKIVAEGVETPQQLAVLRESGCDYGQGYLFSPPTQPRELSMMLEK 919 >gi|229918006|ref|YP_002886652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Exiguobacterium sp. AT1b] gi|229469435|gb|ACQ71207.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Exiguobacterium sp. AT1b] Length = 868 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 164/812 (20%), Positives = 327/812 (40%), Gaps = 35/812 (4%) Query: 165 ISTPNLPQIYLWEPNFYK---DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221 + + L+ Y D S + + +L+ I +I + + Sbjct: 69 LISAGNVCFTLYLLMHYHSTNDNTQSLLFLQNFFYLIMALIVITQSIEFRTLKLRTFDLF 128 Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK 281 +++++G + I F + + + ++L + + Sbjct: 129 ALFSFLLIGGLHIWFFSTQDVSLVSQLSGFEEQMLLISLYMMLAFLYLNRVVSAGQQFRI 188 Query: 282 VGYITFSGIACIAI---LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338 + I G +I LF S V + ++ +I + Y + + Y+ V Sbjct: 189 LLLIGILGFTIASIANTLFVFSGITHEVIHLLQISSILTISISYWVDDVSEDVLAYDSIV 248 Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV----------LIVILIGFTVIQ 388 + +++ ++ + + + + +I A++ L+ LI + Sbjct: 249 DYVLYSVVVMMFLLASDRLLGTSVMDSMIANAVLLLLIRQFVVSKQNALISHRLHTVNTD 308 Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 +A + + ++ + ++ +D+ + ++ ++ILGL + ++ G Sbjct: 309 LEVAVSTKAHELEIREQQYRSLFAYHSEPIFLFDLHGEVLSVNEAGSSILGLTTETLLGS 368 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 N L I DR + IL R + + RV + + + PM +G+ Sbjct: 369 --NILDIIESKDRAPYTIILQELTNGRPRTI--DVRVMTDEGETRVWQLVNVPMI-IDGE 423 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 + IA DIT+ + E IL A D+LTG+ NR + +++ +++ + T+ Sbjct: 424 VEGIYAIAKDITQMIEQQEQILYQAKFDSLTGLHNRYALQEQIERLIE-----EGRTFTL 478 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 M D+D +K+IND G +GD +L + +R+ L + RL G+ F ++ ++ + Sbjct: 479 MFSDLDGFKEINDQFGHHMGDQLLQHIGKRLRTALLPNEYAGRLGGDEFIVVAEHGDDEM 538 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 R P + + V ASIG + +L NA+LAMY AK +G Sbjct: 539 LTERL---RRLVYRPPYYMAGTLVEVHASIGIVRFPEHGKKLKHLLSNADLAMYRAKDKG 595 Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 + F + E L A+E E+ L P + + I+G EAL++W H Sbjct: 596 RDETVMFEPELREDKEERKVLMEGLETALEKGEISLFLQPQVDASTKAIIGAEALMRWQH 655 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 I S+F+ IAEE I+ + +M+ + I + P + +N++ + L Sbjct: 656 -NGAFIPPSQFIPIAEETGHIQDLGRWMIHETFQLIHVFEQGDIHLP-KLSVNLSVRQLF 713 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 D L + ++ L + PSR+ +E+V + +R + L+ +GI L++DDFGT Sbjct: 714 DEHLIDYLKTLFERFPIEPSRLNFELTETVAAHHSDRVLNRILELKALGIKLSIDDFGTG 773 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L+YL P D +K E R + +I+ MA+ + ++A+ + E Sbjct: 774 YSSLAYLVRYPIDELKIPREFTMQLEENREYQMVTTTIVAMARQLGMALVAEGVETEYQE 833 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 L ++GCD +Q A P+ + + + Sbjct: 834 TFLRKIGCDSMQGYRYAKPMPLDEFVIYYMKH 865 >gi|284043232|ref|YP_003393572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] gi|283947453|gb|ADB50197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Conexibacter woesei DSM 14684] Length = 769 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 125/553 (22%), Positives = 237/553 (42%), Gaps = 16/553 (2%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 LA G+ + D+ + + I G + + L H + D Sbjct: 208 FRLAFEGAPIGIALADLDGRFLRVNDALCEITGYTEAELLAANVDLLG--HSDAADAEAE 265 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 +D + + E R+ A + W+ + + + +S+G I DI+++K+ Sbjct: 266 HVDRLMRGEIRSYRLERRIVHATGRSVWVSLSVSLVRDSSGVPRYCIKQLEDISDRKRFE 325 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + A D LTG+ NR++F L V+VID+D +K IND LG A Sbjct: 326 GQLAYLADHDALTGLYNRRAFQRELEQRTSEDGRGG----AVVVIDLDHFKDINDTLGHA 381 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646 GD+V+V + R + + L+ D+L RL G+ F +L + A A +R + Sbjct: 382 AGDEVIVRVARLLAKRLRKTDVLGRLGGDEFATLLSGVSREEAEAVIAELLRVVREQSVV 441 Query: 647 L-LEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHV----ESFRVSSF 700 + I +TAS G A + + E+L +A++AMY AK G + E+ + + Sbjct: 442 VEGGHPIGLTASAGIALFEGDTPLSGEELLVSADIAMYDAKEAGRDRHAISVETEQRQAQ 501 Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 ++R+ + + A+E+ L P++ L E L++ I + F+ I Sbjct: 502 MTERMAWSQRMRDALEHDGFVLFQQPVVDLRTGLPKCHELLLRMRGDDGELIPPAAFLPI 561 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE +I I+ ++ R I + P+ + +N++ + D L E ++ ++ Sbjct: 562 AERSGLIAEIDRWVTRRAIATIAAQEAAGR--PLRLAVNLSGASVSDPGLLEIIEGDLAA 619 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 P + +E+ + N +R+R L ++G L LDDFG YL +PFD Sbjct: 620 MAPPPGSLVFEVTETAAIVNLDRARAFAATLAELGCELALDDFGAGFGSFYYLKRLPFDY 679 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K +G + + + ++R+I+ +A+ + +A+ + E ++ L + D Q Sbjct: 680 LKIDGDFIRQLTSSHEDQLVVRAIVEIARGLGKRTVAEFVGDEATLELLRELRVDDGQGF 739 Query: 939 HVASPLGFNSILK 951 H+ P ++ Sbjct: 740 HLGRPAPLEDLIA 752 Score = 91.6 bits (226), Expect = 7e-16, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 64/192 (33%), Gaps = 3/192 (1%) Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389 G R L+ + + + + + +++++ ++ Sbjct: 3 SQNGPTRVSALVREAVPFAVGAVLAIALVPLSSLREASATWQRVLVLVVLGTAIGCAVRW 62 Query: 390 VLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 ++A Q + E+ A + + + + ++G G + G Sbjct: 63 LVAHLRAGQDALQHAQEQFRTAFEDAPIGIALFTVDGRFTEVNRAFCEMVGAERGQIVG- 121 Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 + L ++ DR + + V R E R+R AD + W +R + + G+ Sbjct: 122 -ISVLDHVAPADRPDSLAAFRALVAGERTTFHAEQRLRRADGREVWCALRASLVRDGAGE 180 Query: 509 ILRYIGIANDIT 520 L +I D++ Sbjct: 181 PLHFIVQIEDVS 192 >gi|148549159|ref|YP_001269261.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1] gi|148513217|gb|ABQ80077.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida F1] Length = 818 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 130/625 (20%), Positives = 253/625 (40%), Gaps = 25/625 (4%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSLAVLGS 414 +++ L+ L+ + LI + + F+ + + ER + + Sbjct: 195 ALGEGSRMLLRVLLITNLLTAMFLIAIAWRRSSKLLAQRQAFASALQEEKERAQITLQAI 254 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHINDRDNFRTILD 469 GD V D+ P + SG G + L + + R +L Sbjct: 255 GDAVITTDVEGSIGYMNPAAEQLTHWQSGQAQGLPLSALFSLVDEHAEEDGRSLVEQVLS 314 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + R+ D + + P+ N +G + + + +D+T++++ + + Sbjct: 315 GSLKGGSEHARLIQRL---DGSTVSINLVGSPIVN-DGQVSGIVLVLHDMTQERQYIANL 370 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+ NR+ F RL L+ A R ++M +D+D++K +ND G A GD Sbjct: 371 SWQATHDALTGLANRREFEYRLEQALNDLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGD 429 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648 ++L + + L+ D LARL G+ FG++L + + +R+ + Sbjct: 430 ELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCP-PDQAERIGEQLRQMVQSLHFVWK 488 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDR 704 R T SIG + T L+ A++A Y AK +G N V+ + R Sbjct: 489 GRPFVTTVSIGLVHMAQAPGTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGE 548 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + + L +A+E + L I L E +E L++ I S F+ AE Sbjct: 549 MAWIQRLHVALEENRFCLYAQEIAPLKTFEGPGHIEILLRLHDESGRTILPSSFIPAAER 608 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTL 822 ++ A++ +++ + I ++ P+ IN++ + D++ E +Q L + Sbjct: 609 YGLMTALDRWVVRNVFMVIRQCLEEGREGPLSTCAINLSGSSIGDDKFLEYLQRLFVEYA 668 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P I +E+ + N + + L+ +G +LDDF S +YL ++P D +K Sbjct: 669 IPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLK 728 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 +GS + A++ I + + IA+ + + + L +G DY Q + Sbjct: 729 IDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLI 788 Query: 941 ASPL--GFNSILKLLKERFPLVKNT 963 P +S+ + PL++ Sbjct: 789 ERPQVFTCDSLQRQRIAARPLLQRA 813 >gi|316931601|ref|YP_004106583.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris DX-1] gi|315599315|gb|ADU41850.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris DX-1] Length = 840 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 134/556 (24%), Positives = 257/556 (46%), Gaps = 14/556 (2%) Query: 398 QGIFSDGERQSLAVLGSG----DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453 + + ++++ A+ + W + R +P++ +LGL + Sbjct: 268 EAARTLLDQRTGALEEAHRLGKIGTWYHRLDTGRTVWSPELYQLLGLEPDAFEPTYDGTK 327 Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513 Y +D + I + + + RV D + I + + SNG I I Sbjct: 328 AYFLDDDAERLLKIQKRVLRSSKTE-ATDIRVLHTDGAPRDLAIICKAET-SNGKITGLI 385 Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573 G A D+TE+K + + A+ D LTG+ NR F +L L ++ + +++ID+ Sbjct: 386 GTAQDVTERKDAERRLEQLAYTDPLTGLANRALFKRQLVD-LFEKPISESEQNALLLIDL 444 Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIAD 632 D++K++ND LG + GD +L+ + + + L +AR+ G+ F ++ S ++ Sbjct: 445 DRFKEVNDSLGHSTGDALLIHVAGVLRQELDPQAFIARIGGDEFAVLTNSPTTSAEATTA 504 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + +++P+ L E E + A+IG A T+ + +NA+LA+Y AK G Sbjct: 505 LADRLIAKLSIPVELAEGEACIGATIGIAILPEHGATAEKASRNADLALYMAKEAGRGRA 564 Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F + + L AV++ L Y P I L ++G EAL++W HP+ G Sbjct: 565 LLFEPIYAEAVDQRLDLGRRLRHAVDSGGLETHYQPQIDLKTGRVIGFEALLRWSHPERG 624 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 IS +EF+ IAE +I + ++L + + W D P I +N++ + + + Sbjct: 625 PISPAEFIPIAETTGLIVDLGHWVLRDACKQMRGWLDAGL-PARTISVNVSPAQIWNGDF 683 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSL 869 + + ++ T P + L +E++ + + ++ L L K+GI L LDDFG+ S Sbjct: 684 EKVVATVLGDTGLPPELLCLELTENLFVDHTKQKVSTTLAALSKLGIGLALDDFGSGYSS 743 Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +PF+ +K + + + G ++ +L II ++ + +++A+ ++ L Sbjct: 744 LGYLTRLPFNRLKIDRTFVDGIATVPEKRKLLGGIIALSHGLGMSVVAEGAELAAEVDLL 803 Query: 928 TRMGCDYIQDSHVASP 943 T CD++Q + P Sbjct: 804 TAFDCDFVQGYVFSRP 819 Score = 55.3 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 6/132 (4%) Query: 407 QSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 A+ + W+ +P+ A++ + PI RD + Sbjct: 25 LRRAMRMARVAYWESHSAAETDFWMSPEFASLYDFQTPDGSVPIAAMRERDLTESRDVLQ 84 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT----E 521 + R E ++ D ++ P +SNG + R G+ D+T Sbjct: 85 AHYAACWAEGR-PFAVETKLPKPDGSPLDCVVHGEPEFDSNGQVQRVFGVVRDVTPETSA 143 Query: 522 QKKSLEGILCNA 533 ++ E A Sbjct: 144 LRQLAESEQRLA 155 Score = 49.9 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 20/152 (13%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-- 441 F V++ V + + +R + V + D W+ +L Sbjct: 131 FGVVRDVTPETSALRQLAESEQRLADFVSTASDWCWESGPD----------HRLLPYPKS 180 Query: 442 -------SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 G W + D+ + +R R + + D Sbjct: 181 VDGNAALQSVASGGRARWELSYAPEEEDSMASHRADMEAHRPFR-DFVYTSIGNDGSRVS 239 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 + +P+ +G L Y G A+DIT+ + + Sbjct: 240 ICTSGKPIFADDGRFLGYRGTASDITQLEAAR 271 >gi|298487212|ref|ZP_07005261.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158236|gb|EFH99307.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 653 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + + A DNLTG+PNR DR+ + + +M +D+D +K +ND Sbjct: 204 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 262 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + R+ L D LAR+ G+ F +L+ ++ A I Sbjct: 263 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 321 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++ ++ SIG + + T E+L NA+ AMYH K G N F ++S Sbjct: 322 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 381 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +++ + +DL A+++ + + Y P + +G EAL++W+HP+ G + +F+ +A Sbjct: 382 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 441 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I ++L+ R + W Q I +N+++ L + +++ Sbjct: 442 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 500 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + + L +E+ M + + S +L RL ++G+ L++DDFGT S L YL +P + + Sbjct: 501 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 560 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + AI+ +I+ + + + I+A+ + + + LT +GC +Q Sbjct: 561 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 620 Query: 940 VASPLGFNSILKLLKE 955 + PL L ++ Sbjct: 621 LGYPLPAEQFLDEIRA 636 >gi|239993891|ref|ZP_04714415.1| GGDEF domain-containing PAS signal transduction protein [Alteromonas macleodii ATCC 27126] Length = 777 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 220/469 (46%), Gaps = 7/469 (1%) Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 + R P ++ I ++ IA+ E++ + + I A D+LTG+PNR LD L Sbjct: 311 IYHRERAVPTADEMRLIEQFAHIASIAIERELANQLIWKQANFDSLTGLPNRNLMLDHLQ 370 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 + + + + + V+ +D+D +K IND LG +GD +L+ RRI + L+ D ++RL Sbjct: 371 LAIKAADRESD-KVAVIFLDLDNFKDINDTLGHDIGDKLLIECARRIKQCLRSDDTVSRL 429 Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672 G+ F IIL I + I P +L + +AS+G + Sbjct: 430 GGDEFVIILNGIKGLSSIELVVQKLLGEIVKPYSLELERVHTSASLGVTLYPDDAKDVKG 489 Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRL 730 +LKNA+ AMY AK G N+ + + R+ + DL AV+N EL++ Y PI Sbjct: 490 LLKNADQAMYGAKDLGKNNYQYYTHDMQTAAIKRMTLLNDLRYAVKNKELFIEYQPIACF 549 Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790 ++++ EAL++W HP G I+ EF+ +AEE +I I+ ++ + +I W+ Q Sbjct: 550 SSQKVMKAEALLRWQHPTKGRITPDEFIPLAEESGLIIDISNWVFNEVCANIKQWKAQNR 609 Query: 791 MPPIFILINIASKD-LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849 + + IN + L+ S I L +E+++M E L Sbjct: 610 QE-LQVSINTSPSHYFNLESNITQWLNLLLDQKISARSILLEVTENLLMEANEMVSKKLF 668 Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAK 907 + R+ G+ + LDDFGT S +SYL P D +K + S + T+ + +II MA Sbjct: 669 QFRQAGVDIALDDFGTGYSSISYLKRFPTDFIKIDRSFVKSMTDVSNDKVLCEAIIVMAN 728 Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 + ++A+ + + L MGCDY Q +A PL + + Sbjct: 729 KLGIKVVAEGVETQEQYDILKSMGCDYAQGYFIAKPLSKSDFESFWERH 777 >gi|257483244|ref|ZP_05637285.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 969 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + ++ A D+LT +PNR + L I+ + + +V+ ID+D++K +N Sbjct: 521 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 579 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ + I A + + Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKTLANHVVE 639 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL +++ V+AS+G A++ + +LKNA+ AMYHAK G N+ + + + Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATM 699 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A++ E L + P + L D I GLEAL++W+HP+ G +S +EF Sbjct: 700 NESLVRRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 759 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + +++ + I SW ++ N+ + I IN++ + L L E ++ + Sbjct: 760 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 818 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 819 VKGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + + L GCD + Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 938 Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960 Q + P+ ++K L Sbjct: 939 QGYLFSKPVIIEECASMIKSSRSLS 963 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ AV + +++ + I +A +L + G + +L+ ++ Sbjct: 157 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215 Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434 A ++ S L A+ IV + Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492 + + + I++ + E R+ + Sbjct: 275 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 326 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550 W I P+ + G + +YI I DIT +K+ IL N+ + NL + +Q+ + Sbjct: 327 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 386 Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572 L L + + ++V+D Sbjct: 387 STLGELAALTAAQGLTLSKAALLVVD 412 >gi|71736799|ref|YP_276642.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557352|gb|AAZ36563.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 969 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + ++ A D+LT +PNR + L I+ + + +V+ ID+D++K +N Sbjct: 521 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 579 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ + I A + + Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKALANHVVE 639 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL +++ V+AS+G A++ + +LKNA+ AMYHAK G N+ + + + Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATM 699 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A++ E L + P + L D I GLEAL++W+HP+ G +S +EF Sbjct: 700 NESLVRRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 759 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + +++ + I SW ++ N+ + I IN++ + L L E ++ + Sbjct: 760 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 818 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 819 VEGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + + L GCD + Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 938 Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960 Q + P+ ++K L Sbjct: 939 QGYLFSKPVIIEECASMIKSSRSLS 963 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ AV + +++ + I +A +L + G + +L+ ++ Sbjct: 157 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215 Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434 A ++ S L A+ IV + Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492 + + + I++ + E R+ + Sbjct: 275 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 326 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550 W I P+ + G + +YI I DIT +K+ IL N+ + NL + +Q+ + Sbjct: 327 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 386 Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572 L L + + ++V+D Sbjct: 387 SALGELAALTAAQGLTLSKAALLVVD 412 >gi|75759044|ref|ZP_00739151.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493443|gb|EAO56552.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 931 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 144/562 (25%), Positives = 270/562 (48%), Gaps = 11/562 (1%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + +R D V+ ++ + ++ + + + +I Sbjct: 374 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 431 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 D + + L + L E R + + ++++ I + P N +++ GIA D Sbjct: 432 KDHELLKKALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 488 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT + + + AF D LTG+PNR+ F L IL+ + T+ N VM +D+D++KK Sbjct: 489 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVMFLDLDRFKK 547 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND LG VGD +L+ + R+ L+ D++AR G+ F I+L + A + Sbjct: 548 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 607 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698 + P + E+++T SIG A + +E++KNA++AMY AK G N F Sbjct: 608 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 667 Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 +++ + +L A++ +E +L Y P + ++I+GLEAL++W HPK G +S + Sbjct: 668 MSIAQNEIQFLXGELSKALQQNEFFLEYQPQVSTKTKDIIGLEALLRWKHPKLGIVSPXQ 727 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ +AEE I + ++L + W +Q + + +N++ +L + Sbjct: 728 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 786 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T P + + +ES+ + + L +L+ +GI +++DDFGT S L+YL Sbjct: 787 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 846 Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P +T+K + G + AI+ SII ++K + +IA+ + E + + L R CD+ Sbjct: 847 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 906 Query: 935 IQDSHVASPLGFNSILKLLKER 956 IQ ++ P+ + LL ++ Sbjct: 907 IQGFFISKPVSSKDVWMLLHKK 928 >gi|152998354|ref|YP_001343189.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] gi|150839278|gb|ABR73254.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Marinomonas sp. MWYL1] Length = 804 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 118/567 (20%), Positives = 249/567 (43%), Gaps = 19/567 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + S + + ++ + + +L ++ + I Sbjct: 236 ELAKSEAYFKAVLHQSSECMLLTNLKGQILDCNSETCRLLAYDKPTLLMLT---IQDIDP 292 Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 N + + + + + ++ ++ D Sbjct: 293 EQTPNLLREWADNSLGDPKIFEAHY--HRSSGVSFPVEVCGNIITLD--HEAHFLASFRD 348 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 IT++K E + A+ D LT +PNR+ + ++ + ++ ++ ID+D++K Sbjct: 349 ITQRKLDQEQVKFLAYYDALTNLPNRRFLNQNIEKVITTAQ-NNGYIGGLLFIDLDRFKN 407 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADF 633 IND +G VGD +LV ++RI L DI R+ G+ F +++ ++ + + Sbjct: 408 INDSMGHHVGDALLVEASKRILACLSQADIAVRMGGDEFVLLIPVLGDNAEEAQSRVTLL 467 Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693 A + + L + ++ ++ASIG + + +++L+ A+ AMY AK G N Sbjct: 468 AETLLSQLCQVFRLEQTDLFISASIGISLFPFDGANDAQILRQADTAMYEAKESGRNAYR 527 Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 +R + +R +++ L A+ N E YLVY P + +++G EALI+W + + G Sbjct: 528 FYRQEMQQQVAERAALEKALHRAISNDEFYLVYQPQVN-EHGQLIGFEALIRWSNEELGL 586 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNEL 810 + + F+ IAEE+ +I + ++LE + + + +W+D P + INI+ Sbjct: 587 VPPNRFIPIAEEIGLIYDVGNWVLENVCQQLKAWQDIGLPPTFKGVAINISPYQFAKECF 646 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 E + +I +T S + L +E +++ N + RL++ I ++DDFGT S L Sbjct: 647 VESVCDVIDRTQVDSSLLDLEITEGMLVENIASVAEKMWRLKEHNIRFSIDDFGTGYSSL 706 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 YL + P + +K + S + + I+ +I+ MA ++ +++A+ + +++ L Sbjct: 707 RYLQHFPINQLKIDQSFVRDLTSDPQSHVIINTIVSMATHMNLSVLAEGVEHQVEKDILE 766 Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955 MGC Q + P+ ++ + L Sbjct: 767 NMGCAKYQGYFFSKPVKADTATQYLSS 793 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] gi|151281211|gb|ABR89621.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 124/630 (19%), Positives = 274/630 (43%), Gaps = 30/630 (4%) Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 + + + +N + + +++L + + + Q + E Sbjct: 278 FFVMVGLSKEDILLPYENNLALYRKIAVFGSALLLLFATAAMWMSIRLAWRKQQADAIRE 337 Query: 406 RQSLAVLGSGDIVWDWDIVRDR---------VTTTPDIATILGLASGSMHG-PIRNWLPY 455 +A G + + +RDR V A+ + G + ++ Sbjct: 338 TYRIATEGGNEGFYILLPMRDRNEFITDFQVVDCNEKGASFYNMNKDKFTGVKVSDFYSG 397 Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 D + G + +++V + R S Sbjct: 398 ---EYFDKVMQAYRIAMD--TGFFEDDYQV--PADSPVDAEWLKRKFVRSEN---GLAIT 447 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DI+E K+ + A +D LT +PNR F+ L L+ + + ++ ID+D Sbjct: 448 LRDISEPKRHEREMSRLATEDGLTALPNRHWFMSYLPKALENARANA-TMLAILFIDLDD 506 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K +ND LG + GD +L ++ +R+ +L+ D + R+ G+ F +IL + ++ + A A Sbjct: 507 FKNVNDTLGHSAGDQLLCTVAKRLRSVLRPSDKVIRIGGDEFTVILEAIHSEEEAAHIAH 566 Query: 636 AMRKSIAMPINLL----EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691 A+ +++ P + ++ + SIG + + ++KNA++AMY AK Sbjct: 567 AINQALREPFEISRDTTSQKNRIGGSIGISIFPRDGQDVETLVKNADIAMYAAKTGSKGQ 626 Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749 + + + ++ + +++L A++ + + Y P ++ +++G+EALI+W HP Sbjct: 627 FRFYDHTLYEDIKMRLNTEQELQQAIKEDQFLIYYQPRVQTQTGKLLGIEALIRWQHPTR 686 Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809 G + ++F+ +AEE +I I +++++ + SW Q + + + +N++ + + Sbjct: 687 GLVLPNDFIGLAEESGLINPIGELVVDKVCAQLASWLKQ-GVEAVPVSVNVSPHQFNEGK 745 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 + + + A ++K S +++ +ES +M N L + +GI + +DDFGT S Sbjct: 746 VKKSIAASLAKHGIPASLLEIELTESAMMRNIGDIFDELTAINAMGIKVHVDDFGTGYSS 805 Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 LS L + D +K + + + G + +I+ MAK + ++A+ + + L Sbjct: 806 LSLLQRLDMDILKIDQAFTSQLGRGKDGEIFFTAIVSMAKALGMRVVAEGVETLEQLHIL 865 Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957 + CD +Q +VA PL ++I +++++ Sbjct: 866 QTLSCDEVQGYYVAWPLPADNIADIIRKQN 895 >gi|296390786|ref|ZP_06880261.1| hypothetical protein PaerPAb_21643 [Pseudomonas aeruginosa PAb1] Length = 827 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 120/576 (20%), Positives = 235/576 (40%), Gaps = 15/576 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++++L Q ++ + ++ ER + + GD V D P Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490 + G P+ + + + R+ +++ + GR + +R D Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + P+ G+I + + +D+T +++ + + A D LTG+ NR+ F R Sbjct: 333 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L+ + R +M +D+D++K +ND G A GD++L + + + L+ D LA Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ FGI+L + + + + + T S+G T Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726 E L++A++A Y AK +G N V+ F R + + + LA+E L P Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570 Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 I+ L + + +E L++ + F+ AE ++ I+ +++E R ++ Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630 Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 PI IN++ + D + + L ++ P I +E+V + N Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + + L+ G +LDDF S YL ++P D +K +GS + A+++ Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 I + + IA+ + ++ L +G DY Q Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQG 786 >gi|94263469|ref|ZP_01287282.1| GGDEF:EAL [delta proteobacterium MLMS-1] gi|93456199|gb|EAT06338.1| GGDEF:EAL [delta proteobacterium MLMS-1] Length = 535 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 122/504 (24%), Positives = 220/504 (43%), Gaps = 27/504 (5%) Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK-------KSL 526 G+ R D ++ P+ + I + DIT+ K Sbjct: 29 EDGGQHTAIHIHRDKDGNPIYVETNAYPLYRGDDQIYAVVETIRDITQMKVIEAEKQARE 88 Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 + + AF D LT +PNR+ DRL S V+++D+D +K +ND G Sbjct: 89 DEVHQLAFYDFLTNLPNRRLLQDRLEQAFASSERSGQY-GAVILLDLDNFKNVNDTRGHR 147 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSI 641 GD +L RR+ E ++ D +ARL G+ F I+L + E +++ A +R ++ Sbjct: 148 TGDLILQMTARRLRETVREDDTVARLGGDEFVILLSNLSTRSETAISRVSRVAEKIRLTL 207 Query: 642 AMPINLL---------EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A P L E + +S+G + + ++ + K A+ AMY AK G N Sbjct: 208 ARPFQLDTPEQGGPSESGEFHLGSSLGITLFHGHEESTDNLFKYADTAMYQAKEAGRNTA 267 Query: 693 ESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 F + + + ++ DL A+ L Y P + ++G EAL++W HP G Sbjct: 268 RFFDPAMQKALEESETLERDLRQAIAEERFELYYQPQV-GAAGHLLGAEALLRWYHPSRG 326 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810 +S F+ ++EE +I I ++L+ R + +W + + IN++++ Sbjct: 327 PVSPLSFIPLSEENGLILPIGRWVLQEACRQLAAWSRSFPVGDFRLAINVSARQFHQPGF 386 Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870 + +Q +I+ P RIKL +E++V+ + + + +L+ GI +DDFGT S L Sbjct: 387 VDEVQEIIAAARVEPRRIKLELTETLVLAKLDDTISKMRQLQAAGIGFAMDDFGTGYSSL 446 Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928 + L +P + +K + + + AI +II M + + I+A+ + ++ L Sbjct: 447 AKLKQLPLEQLKIDRAFVRDLETDPHDAAIAATIIAMGRTLGFEIVAEGVETAAQLQILQ 506 Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952 GC Q + PL +L Sbjct: 507 SQGCGIFQGYYFNPPLPAAKFERL 530 >gi|313105738|ref|ZP_07792001.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa 39016] gi|310878503|gb|EFQ37097.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa 39016] Length = 818 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 123/586 (20%), Positives = 241/586 (41%), Gaps = 15/586 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++++L Q ++ + ++ ER + + GD V D P Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490 + G P+ + + + R+ +++ + GR + +R D Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + P+ G+I + + +D+T +++ + + A D LTG+ NR+ F R Sbjct: 333 SSVPVTLVGAPIH-RGGEITGVVLLLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L+ + R +M +D+D++K +ND G A GD++L + + + L+ D LA Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ FGI+L + + + + + T S+G T Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726 E L++A++A Y AK +G N V+ F R + + + LA+E L P Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570 Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 I+ L + + +E L++ + F+ AE ++ I+ +++E R ++ Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630 Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 PI IN++ + D + + L ++ P I +E+V + N Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + + L+ G +LDDF S YL ++P D +K +GS + A+++ Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I + + IA+ + ++ L +G DY Q + +PL F+ Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 796 >gi|192290828|ref|YP_001991433.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] gi|192284577|gb|ACF00958.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Rhodopseudomonas palustris TIE-1] Length = 673 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 145/672 (21%), Positives = 283/672 (42%), Gaps = 41/672 (6%) Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMK------GYERAVLLIPAWILIFIWFIGLWM 356 + ITLA+++ Y G++ G R +I + Sbjct: 6 SAPDAHTWGMITLAAVLCALGVVAAYGGLRSIRVSEGKGRRHWIIATCFASLSAVAAVVA 65 Query: 357 AITKRLDNDIIQPALVGGLVL--IVILIGFTVIQHVLATGYFSQGIFSDGER---QSLAV 411 + + P + L++ ++ GF + L++ + + ER + Sbjct: 66 LALLAASDAPLAPTIALVLMIGSVIATTGFASLAVWLSSIAGRRTQLTLAERDMVLDAIL 125 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHIN------DRDNF 464 + +D V I G+ G + G + N D+ Sbjct: 126 NDAARGFCLFDAVGRLQLWNEAFLDIYGIPPGREIAGHSLRRTLVVMQNSGNFVSDKRQL 185 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + L E R D + + +R NG +I +D+T+ K+ Sbjct: 186 IELGAALASGGPASLVAELR----DGRHIRIDLR----RLPNG---GWIAKHSDVTDHKQ 234 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + A D TG+PNR +F DR+ ++ + D V+ + ID++K+INDV G Sbjct: 235 AEQRFAYLALHDVATGLPNRAAFNDRIVQSVEQARRFDG-SFAVIRLGIDRFKEINDVFG 293 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 AVGD VL + RR+ + + LAR G+ F I+ + + I D + + Sbjct: 294 QAVGDAVLAEMARRLADTCHWG-FLARPGGDEFSIVTPPDAAADSIQDVCRQLTELCDTE 352 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRS 702 + + V A+ G + + + ++ +A++A+Y AK RG + + Sbjct: 353 FEVDGHRVRVGATAGVSVYPRDGDDADTLIAHADVALYRAKTEQRGTVCLFEPAMDLQIR 412 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ ++ +L +A+E + + Y P EIVG EAL++W HP G +S + F+ +AE Sbjct: 413 EKRALQRELAVALEQRQFEIHYQPQAS-TSGEIVGFEALLRWRHPVRGMVSPALFVPLAE 471 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E I I+ ++L + + SW P+ I +N + D ++ + ++ +T Sbjct: 472 ETGQIGPIDEWVLRSVCAEAASWAK-----PLAIAVNFSPLDFRRFDVPALILQILLETG 526 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 SR+++ +E V++ + + +L +++ +G+ + +DDFG S LSYL PFD +K Sbjct: 527 LEASRLEIEITEGVLIDDFAGAIAILRKIKNLGVRVAMDDFGAGYSSLSYLQSFPFDKIK 586 Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + + AI+ +I+ +A+ ++ +IA+ + E + L + GCD +Q + Sbjct: 587 IDQAFTRKLETNPESAAIVEAILSLARTLKLPVIAEGVETEKQLAFLAQAGCDEVQGYLI 646 Query: 941 ASPLGFNSILKL 952 P L Sbjct: 647 GRPQPIAHYRDL 658 >gi|34496296|ref|NP_900511.1| hypothetical protein CV_0841 [Chromobacterium violaceum ATCC 12472] gi|34330292|gb|AAQ58516.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 606 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 128/569 (22%), Positives = 253/569 (44%), Gaps = 14/569 (2%) Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462 D ++ + V D + P + + M G + + R Sbjct: 30 DSDQVQQILTLVDMAVLSVDEEGVIIDANPAACEMFAYTADEMAGMPVH--QLLPPALRQ 87 Query: 463 NFRTILDSFVGYRRGRLQYEFRV----RAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 +L FV + R D + I I G+ I +D Sbjct: 88 PHAGMLKQFVASGDVIRRMASRSNVTGCRKDGSCFPLEISIAKFR--KGERWTLIATLHD 145 Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578 ++ Q ++ E +L +A D LTG+ NR L+RL L S ++ +D+D +K Sbjct: 146 VSVQMRTQEELLWSATHDALTGLANRALLLERLERALQRSRRT-GAGLALLFVDLDNFKL 204 Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638 IND G +GD ++ ++ R+ L+ D +AR +G+ F ++ I+ A + Sbjct: 205 INDTHGHGIGDQLIQAIAARLLTQLRPGDTVARFAGDEFVVLCEQVARPEDISALAERIN 264 Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697 ++ + L + TASIG A + + + ++L++A++AM+ K +G + F Sbjct: 265 AALREEVRLDGLALGCTASIGIAIGSGRQHLADDLLRSADIAMHAVKQKGRDGWRFFNDS 324 Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R I + L A+E EL+ Y PI+ +VG E L++W H G I ++ Sbjct: 325 LHGQARQRFSIIQGLRSAIEREELHARYQPIVDADGVRVVGAELLLRW-HAAGGEIPPAQ 383 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816 F+ IAE I AI ++ + WR + ++ +N++++ L + L + Sbjct: 384 FITIAESCGAIVAIGYWVFRQACLAEADWRRRWGADAPYVSVNLSARQLDEARLADEFGR 443 Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 ++ +T +P+RI L +E+ +M + + + +L L +G+ + +DDFGT S L+ L + Sbjct: 444 ILRETGAAPARILLEVTETALMADIDVNLKVLQALNALGLRVAVDDFGTGYSSLAQLTRL 503 Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 P + +K + + + G K+ ++R+II + K + ++A+ + ++ L ++GCD Sbjct: 504 PVEVLKIDRAFVDGIGRKQQDVTLIRAIIGLGKALGLKLVAEGVESGEQLQTLRQLGCDL 563 Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKNT 963 IQ P+ +++ +++ ++ Sbjct: 564 IQGYLFHRPMPLDALQSVVEHSLSAARDA 592 >gi|330953153|gb|EGH53413.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 972 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 122/440 (27%), Positives = 233/440 (52%), Gaps = 7/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + A D+LT +PNR + L I+ + + + +V+ ID+D++K +N Sbjct: 521 ERYDAKRKLTYLAENDSLTHLPNRWFLSNYLREIISRTTSAPDA-VSVIFIDLDRFKAVN 579 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + ++ARL G+ F I++ + + I A + Sbjct: 580 DTMGHSVGDQLLIQAGRRLKGCMDENSVVARLGGDEFSIVVTHNVYSESLIKSLATHVVD 639 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL ++I V+AS+G A++ + +LKNA+ AMYHAK G N+ + + Sbjct: 640 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYNARM 699 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A++ E L + P + L D I GLEAL++W+HP+ G IS ++F Sbjct: 700 NESLTRRLQTETLLRGALDRDEFILHFQPKVSLADGRISGLEALLRWNHPEQGMISPADF 759 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + ++++ ++ + SW + + I IN++ + L L E ++ + Sbjct: 760 IPILEDTGLIIPVGVWVIRKVCETLKSWEENNIRL-VPIAINLSVRQLQVKGLAETVKHV 818 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 819 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + ++ L GCD + Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLELLVAYGCDQM 938 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + P+ + ++K Sbjct: 939 QGYLFSKPVISDECAAMIKS 958 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 60/211 (28%), Gaps = 24/211 (11%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ AV + +++ + I +A +L + G + +L+ ++ Sbjct: 157 LVIQATLFAVFFLLISLMLMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215 Query: 389 HVLATGYFS--------------QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 A + + + + + A+ IV + Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFH 493 T S L + + E R+ + Sbjct: 275 VT-------SSQHSRAELLELTIDEVWTGMSSTTEPWQWAPENEVWNGEVRLSGRSGKVA 327 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 W I P+ + G + +YI I DIT++K+ Sbjct: 328 WHRRTIIPILDDLGGVEKYICIDIDITDRKE 358 >gi|239834110|ref|ZP_04682438.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239822173|gb|EEQ93742.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 803 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 145/750 (19%), Positives = 294/750 (39%), Gaps = 40/750 (5%) Query: 206 LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE---IALS 262 L I + F G ++I+F F + +++ + L W + AL Sbjct: 68 LAISAFAGGVGVWATHFVAMLAYSGTVAIEFDFTATVLSAATAVLGFWLSLHLLKGAALK 127 Query: 263 SSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322 +L+ + L H F+G++ I + + P + A L + ++ Sbjct: 128 YALMAAISATLSIAAMH-------FTGMSAIKAAADIHYDLPPIFVGGAISVLILLAAFW 180 Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382 + V I A + + + + +++ I Sbjct: 181 FVTNASGWSRILLPTVGGILAVCTLHFTAVASTELVPNPTLPAADPLGIGRLWLVVAIAA 240 Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 + + F +D + + + D + V + ++ + Sbjct: 241 VVCSVALATISAVFIDRYMTDLKGFA---NATLDGLAVI-RDGGIVEMNARFSELMRRSE 296 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 S+ G + L + + + R + R+ Sbjct: 297 KSLMGIEPDTL-LLAADGLPVCARR--AEAIEAAPRFPNDERI----------FELAVHA 343 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 G + + D+TE++ + I A D LT +PNR F +RL + + + Sbjct: 344 IEYQGRPCEVLAV-RDLTEKRAAQRQIEHMARHDALTDLPNRMFFEERLANAVARPSREP 402 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 V+ +D+D++K +ND+ G A GD VL +++ + + D AR+ G+ F I+ + Sbjct: 403 ---FAVLALDLDRFKAVNDIFGHAEGDRVLKTVSSILKRCVNGIDTAARIGGDEFIILQV 459 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + + ++ + +N + V SIG A + + + + A++A+Y Sbjct: 460 GVPQPRGARKLSEKILEAFRLELNTVLDPTAVGVSIGVALYPNDGKDAEAIRHAADIALY 519 Query: 683 HAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G + + +R ++ DL A+ ++ + Y P+ D G EA Sbjct: 520 RAKTEGRGLFAFYSPEMDQEIRERRQLEADLRHAMVRGQIGIAYQPLFATSDGRCTGYEA 579 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W+HP+ G I F+ IAEE I A+ ++L R W + I +N+ Sbjct: 580 LVRWNHPERGQIPPDVFIPIAEETGTIVALGEWVLREACRTAAEWESH-----LSIAVNL 634 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L + ++++I++T P+R++L +ES +M + + LL R++K G+ + + Sbjct: 635 SPVQFRLVSLPDTVRSVIAETGLDPTRLELEVTESALMKDRLTTLELLRRMKKSGVRIVM 694 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LS L PFD +K + S +T AI+R+I+ + ++++ ++A+ I Sbjct: 695 DDFGTGYSSLSNLQSFPFDKIKIDRSFITSMETDVSARAIVRAIVGLGRSLDLPVVAEGI 754 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 + + GC+ +Q P + Sbjct: 755 ETFDQHRMVIEEGCEQVQGFLFGRPANAPA 784 >gi|291301820|ref|YP_003513098.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Stackebrandtia nassauensis DSM 44728] gi|290571040|gb|ADD44005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Stackebrandtia nassauensis DSM 44728] Length = 868 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 138/653 (21%), Positives = 277/653 (42%), Gaps = 20/653 (3%) Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370 + + + + + A + + + + + A L + + Sbjct: 214 MLVLVWGAGCLVSAGAAWLARRFPGPATAVPLPRVDVAVTLVPAVGASATALYHGYVVGP 273 Query: 371 LV----GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426 L + +V ++ + + +++ + V GS DI D Sbjct: 274 LGPDAIITAMAVVGVLSVRQVLARIDVRRYARVLSDREAYYRSIVSGSSDITTVVDFDGR 333 Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRV 485 ++G + +H +D L + V G R++ + R+ Sbjct: 334 MRFQAASAPWRCHADPTRINGVP--FTDMVHPDDAATVERQLTTLVAGEPGQRIRIDARI 391 Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545 + AD ++ + + N + + D+ E++ + AF D LT + NR+ Sbjct: 392 KDADGEWRDTESIVADQRD-NPKVDGLVIRTRDVGERRALERELAKLAFTDPLTTLSNRR 450 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 + L L + + ++ T++ +D+D +K +ND G +GD VLV + +R+ E L+ Sbjct: 451 ALLRTLESDVA----GGSMPCTLLAVDLDGFKNVNDTRGHDIGDAVLVEVAKRLRESLRP 506 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWT 664 D+ ARL G+ F ++L + + A + +A P + +++SIG A Sbjct: 507 TDVAARLGGDEFAVLLWCP--PERGYEIAERLLAVLAEPYRFDGHASVFLSSSIGLAGC- 563 Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722 ++ +L+NA+LA+ AK +G N +E++ + R ++ +L A+ ELYL Sbjct: 564 ATADDVQALLRNADLALRSAKQQGKNQIEAYDELFEKRVRRRNVLEHELHGAINRGELYL 623 Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782 Y P+I L +VG EAL++W HP G +S EF+ + E+ + + + L ++A + Sbjct: 624 EYQPVISLPHRRVVGAEALLRWQHPTLGAVSPGEFIPVVEDAGLSSDLATWTLGQVAERL 683 Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842 W+ P ++ IN++ + L + + PSR+ + +E V + + Sbjct: 684 AVWKA--GGHPAWVSINLSPRQLHSRLFATDLAQALLSKGVPPSRLVVEVTEHDVAQDMD 741 Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSI 902 LG LR G+ + LDDFG S L L +P D +K + L+ GS E + + Sbjct: 742 ILVAQLGALRGTGVRIALDDFGAGYSSLGQLHRLPVDILKIDRDLVAGSDEGAAPLADVV 801 Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + + +IA+ + E + + + GC +Q +A P+ I +L++ Sbjct: 802 VRLGERLGLAVIAEGVETETQLDVVKQAGCAMVQGYLLARPMAVAKIDAMLRD 854 >gi|313500073|gb|ADR61439.1| Sensory box protein/GGDEF family protein [Pseudomonas putida BIRD-1] Length = 818 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 130/625 (20%), Positives = 253/625 (40%), Gaps = 25/625 (4%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSLAVLGS 414 +++ L+ L+ + LI + + F+ + + ER + + Sbjct: 195 ALGEGSRMLLRVLLITNLLTAMFLIAIAWRRSSKLLAQRQAFASALQEEKERAQITLQAI 254 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHINDRDNFRTILD 469 GD V D+ P + SG G + L + + R +L Sbjct: 255 GDAVITTDVEGSIGYMNPAAEQLTHWQSGQAQGLPLSALFSLVDEHAEEDGRSLVEQVLS 314 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + R+ D + + P+ N +G + + + +D+T++++ + + Sbjct: 315 GSLKGGSEHARLIQRL---DGSTVSINLVGSPILN-DGQVSGIVLVLHDMTQERQYIANL 370 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+ NR+ F RL L+ A R ++M +D+D++K +ND G A GD Sbjct: 371 SWQATHDALTGLANRREFEYRLEQALNDLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGD 429 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648 ++L + + L+ D LARL G+ FG++L + + +R+ + Sbjct: 430 ELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCP-PDQAERIGEQLRQMVQSLHFVWK 488 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDR 704 R T SIG + T L+ A++A Y AK +G N V+ + R Sbjct: 489 GRPFVTTVSIGLVHMAQAPGTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGE 548 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + + L +A+E + L I L E +E L++ I S F+ AE Sbjct: 549 MAWIQRLHVALEENRFCLYAQEIAPLKSFEGPGHIEILLRLHDESGRTILPSSFIPAAER 608 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTL 822 ++ A++ +++ + I ++ P+ IN++ + D++ E +Q L + Sbjct: 609 YGLMTALDRWVVRNVFMVIRQCLEEGREGPLSTCAINLSGSSIGDDKFLEYLQRLFVEYA 668 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P I +E+ + N + + L+ +G +LDDF S +YL ++P D +K Sbjct: 669 IPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLK 728 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 +GS + A++ I + + IA+ + + + L +G DY Q + Sbjct: 729 IDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLI 788 Query: 941 ASPL--GFNSILKLLKERFPLVKNT 963 P +S+ + PL++ Sbjct: 789 ERPQVFTCDSLQRQRIAARPLLQRA 813 >gi|152993066|ref|YP_001358787.1| hypothetical protein SUN_1479 [Sulfurovum sp. NBC37-1] gi|151424927|dbj|BAF72430.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 776 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 148/692 (21%), Positives = 287/692 (41%), Gaps = 21/692 (3%) Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332 L +R++ V + +LF S + + + + + Sbjct: 90 LWLDRYYTNVLLSGIIWGSSAFLLFPESNLFGQMILLLFLFAVG-FSSLGVLATKRDLLL 148 Query: 333 GYERAVLLIPAW-ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391 Y + W + + L A ++ A +I Q + Sbjct: 149 SYIFVMYGPIVWRLFFLAGDLYLNFAYAVLSLVLVLILAANYYGKIINK--SLEDRQQFI 206 Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + ER + ++ ++ + + + I Sbjct: 207 DIKVSHDKLR---ERFFSLFERAPVGIYYYNESLILQDVNQQFRKMSNIKNKEDLLGISL 263 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDIL 510 + D + + + G + F++ + + ++ + PM NS GDI Sbjct: 264 YEDI----DDAKILEVHEKVFKRQTGDYRGPFQMISGTIEENLYVDLSTIPMLNSEGDIT 319 Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570 I I NDIT + + E +L NA+ D LT IPNR +D+L L ++ Sbjct: 320 GGIAIVNDITNEVTAQEKMLRNAYYDMLTNIPNRTLLMDKLQN-LAEVKKSTKNYGALLF 378 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----N 625 +DID +KKIN G +GD V+ + RI E + + LAR++G++F I++ + Sbjct: 379 LDIDNFKKINTTFGQDIGDKVIKQVAHRIEEFIGSHETLARVAGDKFVILIPNIGMDENT 438 Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685 ++ + PI ++ ++ V+ SIG + ++ T+ ++LK AE AMY AK Sbjct: 439 AKDATTEYVEKFNQHFTRPIKVVGKDHHVSFSIGAILFADTEATAFDLLKRAETAMYEAK 498 Query: 686 H--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743 RG +S+ +++M++ D+ A+++ E + Y P +++ EI+G EALI+ Sbjct: 499 KSTRGSMKFYQDSMSTQVEEQLMLENDIHRAIKDDEFEMYYQPQLKVKTNEIIGAEALIR 558 Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIAS 802 W HP+ G + F+ +AEE +I + ++ +RI +D+ + I INI++ Sbjct: 559 WHHPEKGLVLPDAFIQLAEESGIIIKLEEWIFDRIFKDVKEMNRDMGGFSLHHISINIST 618 Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862 L+ E + L+ + P +L +ES ++ N + + + L+ G + ++DD Sbjct: 619 VHFLEPHFVEKIMLLVKEHKVKPEWFELEITESGIIRNIDDAIRKIRELKGFGFAFSIDD 678 Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922 FGT S LS+L +P D +K + S + + I+ +++ + + I+A+ + Sbjct: 679 FGTGYSSLSHLKELPVDVIKIDQSFIRNMNQDDEMIVEAVVAIGQKFHLGIVAEGVENND 738 Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 +K L + CD Q + + LLK Sbjct: 739 TLKYLQHVDCDTYQGYLASMAVPLKDFEALLK 770 >gi|117924195|ref|YP_864812.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] gi|117607951|gb|ABK43406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Magnetococcus sp. MC-1] Length = 577 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 139/572 (24%), Positives = 258/572 (45%), Gaps = 15/572 (2%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 G + + S + + D + G+ GS+ G Sbjct: 7 QAGVAHKAKEQSLRMIKTLLENSHEGILILDARGTVHQANQAFMNMTGMKKGSLVGRH-- 64 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 + + + ++ G Q D++ + +++ + +G + Sbjct: 65 -ILRLMPEEFRERLLEEIREELWQSGFWQGSLSQSLGDDKQLTVDLKVSAVLPPDGKVSY 123 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV- 570 YI + +D+LTG+P+R F DRL + L+ N + + Sbjct: 124 YIAQLRGSSVVSSPPPPKD---NRDDLTGLPSRILFEDRLQQAISLAVRHKNCVGAMFLG 180 Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630 +D ++ K I + LG D+++ + R+ + L+ D +AR++ + F ++L N Sbjct: 181 LDTERIKLIRNSLGQTATDELIREVAVRLDDCLRTTDSVARIAEDSFALLLTDLNGHKDA 240 Query: 631 AD----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686 A + +S+ P+ L + + V A++G + T E+L NAE A+ HA+H Sbjct: 241 VRNSSVVARKVYESLVKPVILNGQPVEVNAAMGITLFPQDGSTPRELLMNAETALNHARH 300 Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744 RG N+ + F +R ++ L A+E +EL L Y P + L D I+G EALI+W Sbjct: 301 RGWNNYQFFSSEMTEAARERFELETHLRQAIEKNELVLYYQPQVDLHDGTIIGAEALIRW 360 Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804 HP+ G IS ++F+ +AEE +I I +++ R I W + + P+ + IN+++ Sbjct: 361 KHPERGLISPAQFIPVAEETGLIVPIGEWVMRTAIRQIAIW-KELGVTPVRVGINLSALQ 419 Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864 L ++ L+++ PS + L +ES +M + R+ +L R+ +G+ L++DDFG Sbjct: 420 FKRQNLAALVEELLNEHDIDPSLVDLEITESAIMDDVGRAIEMLKRISALGVKLSIDDFG 479 Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 T S LS L PF T+K + S +T + AI+ +II MA ++E T+I + + Sbjct: 480 TGYSSLSQLRQFPFQTLKIDRSFVTDLESSGDKAIVSAIIAMAHSLEQTVIVEGLETSAQ 539 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + + + C+ +Q + PL LL+E Sbjct: 540 LTIMKELNCNEMQGFLFSKPLPAEEFTALLRE 571 >gi|329910008|ref|ZP_08275190.1| hypothetical protein IMCC9480_42 [Oxalobacteraceae bacterium IMCC9480] gi|327546318|gb|EGF31340.1| hypothetical protein IMCC9480_42 [Oxalobacteraceae bacterium IMCC9480] Length = 1185 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 121/574 (21%), Positives = 230/574 (40%), Gaps = 13/574 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + + + A + + ER + + GD V D+ P + G Sbjct: 611 FILGISEDITALHAEQLALQASEERLRVTLNSIGDAVITTDMQARVTYLNPVAERMTGWL 670 Query: 442 SGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMII 497 G G + I H +D + + + Sbjct: 671 LGDATGRPLTEVFRIYHRDDDVPLSDPVAQVIATGVASSTPGSAMLAGPGPGGTRAAIED 730 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 P+ ++ +L + + +D++E K E + A D LTG+ NR+ F RL + Sbjct: 731 MASPIRDAGEVMLGVVLVFHDVSEAHKMAEQMTHLAAHDALTGLLNRREFEHRLEQAVAS 790 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 ++ D TVM +D+D++K +ND G GD++L LT + L+ D LARL G+ F Sbjct: 791 ASRDSQEH-TVMYLDLDQFKIVNDTCGHVAGDELLRQLTTLLHAKLRQSDTLARLGGDEF 849 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 G++L + + + L++ + SIG ++ + T +L+ A Sbjct: 850 GVLLEQCGTAPALRVAEQLRQTVSDFHFVWLDKSFPIGVSIGLVTFGAGMTTPD-ILRMA 908 Query: 678 ELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733 + A Y AK +G N V + + R ++ L A++ L PI+ L Sbjct: 909 DSACYVAKDKGRNRVHVYSEENAELVHRQGQMSWVARLQQALDEDRFVLFCQPILGLGQH 968 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 E L++ I F+ AE ++ +++ +++ R + R P Sbjct: 969 HGRHEELLLRLRADDDTLIPPMAFIPAAERYGLMPSLDRWVIRRALAT-HALRHPPGSVP 1027 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 + + IN+++ + D + A + T PS I +E+ + N + +L+ L+ Sbjct: 1028 VLVAINLSATSICDETFLPFVLAQFTLTGVPPSEICFEITETAAIANLGEATVLIRALKA 1087 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911 IG +LDDFG+ S +YL ++P D +K +GS + A++ +I + + Sbjct: 1088 IGCKFSLDDFGSGMSSFTYLKHLPVDYLKIDGSFVKDMMDDPVDRAMVEAIHRIGHVMGL 1147 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 IA+ + + + L +G D+ Q + P+ Sbjct: 1148 QTIAEFVESDAIMAALREIGVDHAQGYAIGKPVP 1181 Score = 44.2 bits (103), Expect = 0.11, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 10/106 (9%) Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-- 482 V + GL++ ++ G L F + D+ RL Sbjct: 527 GQFVLWNKAAERLTGLSAATVIGNTNRDLF------APGFAAVYDAHDHEIMVRLSSVGI 580 Query: 483 --FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526 VRA D + P+ ++ G + +GI+ DIT Sbjct: 581 PSHPVRAQDGTARILRTHSLPVFDAAGKVDFILGISEDITALHAEQ 626 Score = 41.5 bits (96), Expect = 0.72, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 67/227 (29%), Gaps = 41/227 (18%) Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV--------LATGYFSQ 398 + W I + +L + I LV++ + T + Sbjct: 308 LAWWAIDRQLRPLDQLASRIDAVRQRPSLVMLPAVYAATEFGRLAQSFDELMRERLLADS 367 Query: 399 GIFSDGERQSLAVLGSGDIVW----DWDIVRDRV-----TTTPDIATILGLASGSMHGPI 449 E A D + + D+ + + +LGL + G Sbjct: 368 RYQRSAEELRAATDSKLDAFFVLQAEHDVAGEVTDFRFSYINDNGLQLLGLKREQVIGQG 427 Query: 450 RNWLPYIHIND--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507 L ++ D D + +L S + LQ EF + Q W+ ++ P+++ Sbjct: 428 LCELLPVNRTDGFFDRYVQVLQSGIA-----LQEEFAIDTPGIQATWLAHQVTPLAD--- 479 Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + DI+++K+ + NR + + Sbjct: 480 ---GVAITSRDISQRKRDELELST-----------NRAFLQSLIDHL 512 >gi|330988240|gb|EGH86343.1| sensory box protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 969 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + ++ A D+LT +PNR + L I+ + + +V+ ID+D++K +N Sbjct: 521 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 579 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ + I A + + Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKTLANHVVE 639 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL +++ V+AS+G A++ + +LKNA+ AMYHAK G N+ + + + Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATM 699 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A+ +E L + P + L D I GLEAL++W+HP+ G +S +EF Sbjct: 700 NESLVRRLQTETLLRGALARNEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 759 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + +++ + I SW ++ N+ + I IN++ + L L E ++ + Sbjct: 760 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 818 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 819 VEGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + + L GCD + Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 938 Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960 Q + P+ ++K L Sbjct: 939 QGYLFSKPVIIEECASMIKSSRSLS 963 Score = 51.1 bits (121), Expect = 0.001, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ AV + +++ + I +A +L + G + +L+ ++ Sbjct: 157 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215 Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434 A ++ S L A+ IV + Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492 + + + I++ + E R+ + Sbjct: 275 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 326 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550 W I P+ + G + +YI I DIT +K+ IL N+ + NL + +Q+ + Sbjct: 327 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 386 Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572 L L + + ++V+D Sbjct: 387 STLGELAALTAAQGLTLSKAALLVVD 412 >gi|78358456|ref|YP_389905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220861|gb|ABB40210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 935 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 138/562 (24%), Positives = 253/562 (45%), Gaps = 15/562 (2%) Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457 E LA +G+ + D V + I G A + L Sbjct: 255 RRSAEELRLAAKVFEHAGEGILITDAQGHIVNVNRAFSVITGYAREEVMAQTPRLLESDR 314 Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 +D + ++T+ + + E R + ++ I + + G+I Y + + Sbjct: 315 YDD-EFYQTVWQALREH--DYWHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFS 371 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DIT K++ + + A D LTG+PNR DRL + + + V+ ID+D +K Sbjct: 372 DITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRR-GMHLAVVFIDLDGFK 430 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637 ++ND G AVGD +L L+RR+ ++L+ D LARL G+ F +L+ + + Sbjct: 431 EVNDQHGHAVGDKLLSVLSRRMTQVLREDDTLARLGGDEFVAVLLDLPDISVSVPILDRL 490 Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFR 696 + A P+ + + V+ASIG + + + + ++L+ A+ AMY AK G N F Sbjct: 491 IEVAAQPVPIGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFD 550 Query: 697 VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 R+ R +E + A+ N + L + P + + E++G EALI+W HP G +S Sbjct: 551 TEKDRTLRTRHEELDSIEKALANGQFLLYFQPEVNMRTGEVLGAEALIRWQHPTRGLLSP 610 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 + F+ I E + + + +E I WR P I +NI ++ LL + + Sbjct: 611 ASFIPIIENHPLGIDVGEWTIEAALTQIEVWRKAGLHVP--ISVNIGARHLLQPDFIMHL 668 Query: 815 QALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + ++S+ P ++L E+ + + + L+ ++G+ LDDFG+ S L+YL Sbjct: 669 RGMLSRHPGAQPQDLELEILETSAVEDFVQVSQLMALCGRMGLRFALDDFGSGYSSLTYL 728 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P +K + + IAIL +++ +A++ IA+ + + L RMG Sbjct: 729 KRLPAHLLKIDQDFIRDMLEDPDDIAILDALLALARSFGRNCIAEGVESIQHGEMLLRMG 788 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 C++ Q + P+ + + L Sbjct: 789 CEWGQGYAIGHPMPAHEFEQWL 810 Score = 75.0 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 6/153 (3%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGL 440 ++ + Q + S ++ +++ + D + I I G+ Sbjct: 115 GTVEDITDLKRVEQALNSMRRQREELASHVPGMLYQYRLRPDGSSHFPYASARIQEIYGV 174 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 A + +H DRD + + G E+RV+ D + W+ Sbjct: 175 APEDVVEDATPAFAALHPEDRDRVHETIQAS-GQSLALWHDEYRVQFPDGRVIWVEGEAS 233 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 P + +G IL + G +D+T +++S E + A Sbjct: 234 PEAMPDGSIL-WHGYIHDVTSRRRSAEELRLAA 265 Score = 73.8 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 11/126 (8%) Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476 W D+ +T + + +LGL G+ +L IH DR F D+ + + Sbjct: 22 GSWHLDLGSQLLTCSDEACRVLGLDVGAPIA-FERFLQCIHPEDRPLFDRAWDAAMCGK- 79 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-------SLEGI 529 L +R+ + Q W+ +R +++G G DIT+ K+ Sbjct: 80 -SLDLRYRIV-SGGQVRWIHLRATFKGDASGRPRAADGTVEDITDLKRVEQALNSMRRQR 137 Query: 530 LCNAFQ 535 A Sbjct: 138 EELASH 143 >gi|170690417|ref|ZP_02881584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] gi|170144852|gb|EDT13013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia graminis C4D1M] Length = 667 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 134/542 (24%), Positives = 250/542 (46%), Gaps = 11/542 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + G+ ++ G W ++ D + F R + Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIIGRN-VWALFMSSEDGAASSQNIAGFF-NRGVSYEV 186 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E RV+ + ++ S S D I DITE++ + E + A D+LTG+ Sbjct: 187 ERRVKTLHGERLFLFRNKFVQSGSGIDEQYLICSGTDITEERLAQERLRQLANTDSLTGL 246 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR + D + T ++ +A V+ +D+D +KK+ND G GD ++ ++ IG Sbjct: 247 PNRNAIQDYIRTAIEEAA--PGESVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSAAIGM 304 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D LARL G+ F I+L ++ + ++ A + + + P +L E+ SIG A Sbjct: 305 CLNEGDTLARLGGDEF-IVLAAKGTAHELEATAQRILERMRTPFSLGLVEVYTGCSIGIA 363 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 + ++++A+ AMY AK G F R + + + +L ++ + Sbjct: 364 RYPEHGDNLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGLDEGQ 423 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L L Y P + L + G+EAL++W+ P+ G I +EF+ AEE +I + +++E Sbjct: 424 LTLHYQPKLVLSTGVVQGVEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMET-- 481 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + + +A+ + I IN++++ L+D + ++ P + + +ES ++ Sbjct: 482 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFTEALAAANLEPCLVDVELTESCLIE 541 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897 + + L+ R+IG + LDDFGT S LS LG IP D +K + S + A Sbjct: 542 DEAAAIDLIKHFRQIGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADTKAQA 601 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++RS++ +A+ + ++A+ I E + + +G +Y+Q A P+ + L++R Sbjct: 602 LVRSMVVVAQELGFKVVAEGIETESEEAFMKGLGVEYVQGYLYAHPMPAADFERWLQDRQ 661 Query: 958 PL 959 L Sbjct: 662 KL 663 >gi|170692794|ref|ZP_02883956.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M] gi|170142450|gb|EDT10616.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M] Length = 647 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 118/448 (26%), Positives = 223/448 (49%), Gaps = 10/448 (2%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + + A D LT +PNR++F D L L + D R +M++D+D +K +ND L Sbjct: 190 RAEKDLEYLASTDPLTDLPNRRAFYDELKARLHKAHAADK-RVALMMVDLDNFKIVNDTL 248 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD++L + + +++ D+++R+ G+ F +++ + + ++ A + ++++ Sbjct: 249 GHGAGDELLKQVADALRNVVRPNDLVSRIGGDEFAVVIGPDASRVRARATAGRIARNLSR 308 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701 P L + VTAS+GF+ + +E++ NA++A+Y AK RG + F+ Sbjct: 309 PFILHGSDSVVTASVGFSVYPEDTGEMAELVSNADIALYSAKSRGKSIAVEFQSEMTAEA 368 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 R I+ +L AV+ L +VY P + ++G EAL++W HP G IS +EF+ IA Sbjct: 369 QRRARIEAELRKAVDQDGLQIVYQPQFDCLSGRLLGAEALVRWTHPSEGPISPAEFVPIA 428 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E +I ++ ++L R RD +W + + +NI+++ L + + K+ Sbjct: 429 ENSDLIVSLGRWVLWRACRDAANWNA-GRNAGVHVAVNISARQLRAEGFTNEVCDALEKS 487 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 S ++L +ES +M N + LR G+ L+LDDFGT S LSYL P ++ Sbjct: 488 GLPASLLELELTESQLMSNMSVGIQAMQELRAAGVRLSLDDFGTGYSSLSYLQSFPVHSI 547 Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 K + S + I+ +II MA + ++A+ + ++ L CD +Q Sbjct: 548 KIDRSFICPLPNGGQPIVTAIISMAHSFGLLVVAEGVEYPAQLEWLCDAHCDVVQGFLTG 607 Query: 942 SPLGFNSILKLLK------ERFPLVKNT 963 P+ +L +++ E + + + Sbjct: 608 HPMSLEQLLAIIRMEEDRGEHKRVGRRS 635 >gi|330976131|gb|EGH76197.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 725 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 127/587 (21%), Positives = 230/587 (39%), Gaps = 18/587 (3%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V+ ++ + + R S D + D ++ I Sbjct: 147 VLQDLAVMVIERMELRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495 G S G + I R L + D + Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAIHRDGHTLPI 264 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 + + G+ I DIT+ ++ + + A D+LTG+ NR + R+ Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDITQLVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 D L +++ID+D +K +ND LG A GD VL + R+ E + +++RL G+ Sbjct: 323 -----DAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGD 377 Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675 F + L + K +A+ I PI + I + ASIG + + + +ML Sbjct: 378 EFVVFLSDTADPDKAIKLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGADYDDEQMLG 437 Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733 NA+LA+Y AK G + V +F ++ + + A N E L Y P +RL D Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497 Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793 I G EALI+W+HP G +S + F+ E + + ++L WR+ Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAKWRNTGCEE- 556 Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853 I +N+ + + E +++ + ++L +E++++ N +R L LR Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616 Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911 +G+ + DDFGT + LS L P +K + S ++G ++K I+ +++ +A Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNL 676 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957 + A+ I + CD Q P+ + + + Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHDFTERYISSHN 723 >gi|120556691|ref|YP_961042.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8] gi|120326540|gb|ABM20855.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8] Length = 755 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 109/443 (24%), Positives = 223/443 (50%), Gaps = 6/443 (1%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +I ++K + D LTG+ NR+ F++ L ++++ + ++++D+D++ Sbjct: 302 QEIDQRKAIQVDLQRLESTDTLTGLANRRFFMEDLAHTINIADRQMR-QIALVMMDLDRF 360 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 + +ND LG GD++L+ ++ R+ L ++A G+ F + ++ + Sbjct: 361 QMLNDSLGHQFGDELLIKVSERLNGLSNERVLVAYSGGDEFMVCQQQVDDIDDVIHLLGQ 420 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 +++ A P + ++TA++G A + S + + +L+NA++A+Y AK +G N + + Sbjct: 421 IKQCFAAPFEVQGEAHSITATMGVAVYPQSGLDADTLLRNADIALYRAKEQGRNTYQFYT 480 Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + ++ DL A+ N E L + P + L EI +EALI+W HP G + Sbjct: 481 EGMQDREVLRLELDRDLSQALANDEFVLYFQPQLNLDTGEINSVEALIRWQHPVRGLLPP 540 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE I I +++ R + W + + +N++ ++L D+ L + + Sbjct: 541 VEFIPLAEESGRITEIGRWVVLAACRQLARW-KGTPCEHLRVAVNLSGRELDDDSLIDHI 599 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 ++ ++ PSR+++ +E + + N E + L +L ++G+ L +DDFG S L YL Sbjct: 600 RSTLASEAVDPSRLEVELTEEIFIQNIEHNLNQLSQLHQLGVHLAIDDFGVGYSSLGYLR 659 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S +T TE I R++I +A N+ ++A+ + E + L C Sbjct: 660 DFPVDLLKIDRSFITDVTERHDDAVITRAVINLAHNLGIQVVAEGVETEEQLNFLKAHRC 719 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 + Q ++ P+ + + L E Sbjct: 720 NLAQGYLISRPIPAADLERALAE 742 >gi|325276964|ref|ZP_08142645.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] gi|324097906|gb|EGB96071.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] Length = 818 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 129/625 (20%), Positives = 253/625 (40%), Gaps = 25/625 (4%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSLAVLGS 414 +++ L L+ + LI + + F+ + + ER + + Sbjct: 195 ALGEGSRMLLRVLLFTNLLTAMFLISIAWRRSSKLLAQRQAFASALQEEKERAQITLQAI 254 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD-----NFRTILD 469 GD V D+ P + + G + L + + +L+ Sbjct: 255 GDAVITTDVEGCIGYMNPAAEQLTHWQAAQAQGLPLSALFSLVDEHAEENGTSLVEQVLN 314 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + R+ D + + P+ N +G + + + +D+T++++ + + Sbjct: 315 GSLNGGAEHARLIQRL---DGSTVSINLVGSPIVN-DGQVAGIVLVLHDMTQERQYIANL 370 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+ NR+ F RL L+ A R ++M +D+D++K +ND G A GD Sbjct: 371 SWQATHDALTGLANRREFEYRLEQALNGLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGD 429 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648 ++L + + L+ D LARL G+ FG++L + + + A +R+ + Sbjct: 430 ELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCPS-DQAERIAEQLRQLVQSLHFVWK 488 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDR 704 R T SIG + T L+ A++A Y AK +G N V+ + R Sbjct: 489 GRPFVTTVSIGLVHMAQAPSTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGE 548 Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + + L +A+E + L I L E +E L++ I S F+ AE Sbjct: 549 MAWIQRLHVALEENRFCLYAQEIAPLKTFEGPGHIEILLRLHDESGRTILPSSFIPAAER 608 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTL 822 ++ A++ +++ + I D+ P+ IN++ + D++ E +Q L + Sbjct: 609 YGLMTALDRWVVRNVFMVIRQCLDEGREGPLSTCAINLSGSSIGDDKFLEYLQRLFVEYA 668 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P I +E+ + N + + L+ +G +LDDF S +YL ++P D +K Sbjct: 669 IPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLK 728 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 +GS + A++ I + + IA+ + + + L +G DY Q + Sbjct: 729 IDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLI 788 Query: 941 ASPL--GFNSILKLLKERFPLVKNT 963 P +S+ + PL++ Sbjct: 789 ERPQVFTCDSLQRQRIAARPLLQRA 813 >gi|120612138|ref|YP_971816.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] gi|120590602|gb|ABM34042.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1] Length = 886 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 132/585 (22%), Positives = 247/585 (42%), Gaps = 28/585 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 G + ++ + + A+ D + I Sbjct: 301 GGFTMAYLRRISHARNDLARSKATLEQALGSMVSGFVLLDSRHRVLQWNQRYEEIFPWLR 360 Query: 443 GSMH-----GPIRNWLPYIH-INDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHW 494 M + H + + R + R R +E + + F Sbjct: 361 SMMQVGLPFRSVLEATSRYHLPDADEAMRREWVEQRLLLQRETRGTHEQML--PNGHFIQ 418 Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554 + R P + +D+TE +++ I AF D LTG+PNR+ LDRL Sbjct: 419 ITERATPE-------GGLMITYHDVTEMRRASAEIESLAFYDPLTGLPNRRLLLDRLHQA 471 Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614 L + ++ +D+D++K +ND G +GD +L + R+ + D +ARL G Sbjct: 472 LATAQRSRQF-GALLFLDLDQFKTLNDTQGHEMGDLLLQQVALRLRVCARPADTVARLGG 530 Query: 615 NRFGIILISE-NNSLKIADFAIAM----RKSIAMPINLLEREITVTASIGFASWTSSKIT 669 + F +++ ++ + A + +++A P +L ++ T S+G A + + T Sbjct: 531 DEFVVMMSDLSHDRQEAASITRRIGEKILQAVAQPYHLQQQMHQHTCSVGAAIFGDQRQT 590 Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727 ++++LK A++AMY K R GN + F ++ DL A+ E L Y P Sbjct: 591 AADLLKQADIAMYQVKARRGNALCFFDPQMQVVISQRARLETDLQAAIAAQEFVLYYQPQ 650 Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787 E++G E L++W HP G I+ EF+ +AEE +I I ++L + +W Sbjct: 651 FS-RAGEVIGAEGLLRWKHPGRGLIAPGEFIGVAEESELIVPIGQWVLRTACVQLAAWSR 709 Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847 + + + +N++++ + + + P ++L +ES+V+ N + S Sbjct: 710 DPRLAHLHVAVNVSARQFRHPDFVASVVEALQHAGVKPHLLELELTESLVLDNVDDSVAK 769 Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905 + LR G+ ++DDFGT S L+YL +P +K + S + ++ I+++II M Sbjct: 770 MHLLRTKGVRFSVDDFGTGYSSLAYLTRLPLHQLKIDQSFVRNLGKRPTDDVIVQTIIGM 829 Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 A+N++ +IA+ + + L R GCD Q A P+ L Sbjct: 830 ARNLDLEVIAEGVETQEQRDFLDRHGCDLYQGYLFARPMPAQDFL 874 >gi|148258088|ref|YP_001242673.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gi|146410261|gb|ABQ38767.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 777 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 132/694 (19%), Positives = 285/694 (41%), Gaps = 47/694 (6%) Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336 +W + + A + + + + A+ + ++ +I + + R Sbjct: 91 KWEMRYQFGAILYAAALGLWCAV-----GLLATTDTVVHMISIVVTVGYIAGGVGRTFGR 145 Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396 + I + + + + + V L I L + Sbjct: 146 PWIYHL-QIALSFGITSIALILHG------TIYYIGLAFVAAGFLFALREITKNLQKIFV 198 Query: 397 SQGIFSDGE-----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH--GPI 449 D E + A+ + + ++ L + G Sbjct: 199 DALTARDREAALANQFDTALNNMPHGLCMFRPDGRLAVMNHRFGEMMSLPEDILQSGGTA 258 Query: 450 RNWLPY------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503 + + I + +++ + + D W +PM+ Sbjct: 259 ADIINACVLSGSISAASGRLILSEIENTKTHNIITSDPDIM---RDRSLSW---TFQPMA 312 Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 + + + DITE++ + I A D LT +PNR SF D + +L + Sbjct: 313 DG-----GAVVLLEDITERRHAEARISHLARYDELTTLPNRVSFRDEIERLLRIPPRQGE 367 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 L ++ +D+D++K++ND LG GD +L +++ R+ ++L+ D +AR G+ F + + Sbjct: 368 LS-ALLFVDLDRFKQVNDTLGHPCGDQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRN 426 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 ++ A A + ++ + + + AS+G A T+ I++ +LKNA++A+Y Sbjct: 427 IRSNDDAAVLARRIVDQLSERYKIDNHLVEIGASVGIAM-TAPGISADTLLKNADMALYR 485 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G FR ++ ++ DL A+ N E L Y P++ L +I EAL Sbjct: 486 AKAEGRGTFCFFRDELAQTVEARRILELDLRKALANEEFELFYQPLVNLKSGKISTCEAL 545 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 ++W+HP G +S + + +AE++ +I + ++L + + + W D + + +N + Sbjct: 546 LRWNHPVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACLECMKWPDA-----VSVAVNFS 600 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + ++ ++ + + P R+++ +ES ++ N + + +L +L +G+ ++LD Sbjct: 601 PQQFHQRDVLSEVRYALEVSGLPPHRLEIEITESSLLRNTQLTHDVLSQLHMLGVRISLD 660 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYG 920 DFGT S LSYL P + VK + S + G R +LR + ++ ++ +++ + I Sbjct: 661 DFGTGYSSLSYLHNFPLEKVKIDRSFLEGIDTDRPLTLLRGVARLSADLGMSVVVEGIET 720 Query: 921 EIDIKELTRMG-CDYIQDSHVASPLGFNSILKLL 953 ++ ++ G Q + P+ I +LL Sbjct: 721 NEQLELVSADGTVTEAQGYLFSRPVPAIRIRQLL 754 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 146/631 (23%), Positives = 278/631 (44%), Gaps = 23/631 (3%) Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQ 407 I + + + ++ + G I+ + + + Sbjct: 206 HSTIFSRHRTRHKDGHWVWLETRGYNMLHDSAINGLVFSIEDITLRKDVELKLQEETAML 265 Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNW--LPYIHINDRDNF 464 + + +++ D + G +S + G L + ND+ + Sbjct: 266 RAVLDLNPSMIYVKDSEGRFTISNQVFQRRFGYSSEDELRGKTVYDICLKMANENDKFSA 325 Query: 465 RTILDSFVGYRRGRLQYEFRVR--------AADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 R I D + +Q ++ +D W P+ ++ +I+ +G+ Sbjct: 326 REIADEIQQQDQQVMQTGIPLQDVEAPGFWHSDMHL-WFHTSKYPLRDARNNIIGILGVT 384 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DIT++K + I A D LT +PNR+ ++ L T ++ S + T++ D+D + Sbjct: 385 RDITKRKMTELQIEYQAMHDMLTDLPNRRYLVNTLATAMETSRQQQS-SLTMLFCDLDFF 443 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K +ND G GD L+ +++RI +L D +AR GN F I+ S I A Sbjct: 444 KSVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEFVILTNSSLAESSIKAKA-- 501 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + ++++ + + + SIG A + +++++ A+ AMY AK RG N E + Sbjct: 502 IARAVSERLVFENVAVKIQVSIGIAQLSPDHQVPADLIREADAAMYQAKERGRNRTEIYD 561 Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + L A+E +EL + Y P + L+D + G E L++W+ P++G IS Sbjct: 562 AALQSKSTKHARMDVALRFALERNELSVAYQPKVSLVDGSVRGFELLLRWNSPEYGMISP 621 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEG 813 +EF+ IAE M+ I ++ +E+ R + +W+ I + +N++ + LL Sbjct: 622 NEFIPIAETSGMVVPIGMWAMEQACRQLAAWQASYPAMGDITVAVNVSMRQLLHTSFFTQ 681 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ ++ + P I+L +E+ M NP ++ L L+ +G+ L LDDFGT S L+YL Sbjct: 682 VREILDSSGVVPHTIELELTETSAMANPLQTIENLALLKNLGLRLALDDFGTGYSSLAYL 741 Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + + + G + I+R ++ +A+ + +A+ + + I EL MG Sbjct: 742 QKLPIDILKIDKTFVHGLGTKQSDREIIRLMMALAQTLNLQTVAEGVETIMHINELQEMG 801 Query: 932 CDYIQDSHVASPLGFNSILKLL--KERFPLV 960 CD Q + PL L+ +FPLV Sbjct: 802 CDLGQGFIFSPPLSAEEAETLICSSHQFPLV 832 Score = 79.6 bits (195), Expect = 3e-12, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 83/276 (30%), Gaps = 23/276 (8%) Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYF 325 I F+ + W V ++ + ++ S +I + + Sbjct: 13 ISFIRYF-----WLRTVILLSEKFLLAEILIATCSIVVLAAQNTIPTLPM---PWLIAIA 64 Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385 ++ M + A+L I A LI A + + + + +L+ T Sbjct: 65 GVFPLMLRHRIAMLCIAALALIGYRLNVYLGATA---SDWLPDLFATICIGWLSLLLAKT 121 Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445 + + +A ++ R + + I D P + ++G + + Sbjct: 122 LNINRIALSQA----RTNERRFNAIARVTRHIFIITDADYQIKFANPALQEVIGYSYEEI 177 Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505 P +H +D + + L + R R D + W+ R M Sbjct: 178 LHNAI--KPILHPDDEEEHKEKLRHLRNTPHSTIFSRHRTRHKDGHWVWLETRGYNML-H 234 Query: 506 NGDILRYIGIANDIT-----EQKKSLEGILCNAFQD 536 + I + DIT E K E + A D Sbjct: 235 DSAINGLVFSIEDITLRKDVELKLQEETAMLRAVLD 270 >gi|162146655|ref|YP_001601114.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus PAl 5] gi|161785230|emb|CAP54776.1| putative signalling protein, GGDEF family [Gluconacetobacter diazotrophicus PAl 5] Length = 730 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 134/583 (22%), Positives = 246/583 (42%), Gaps = 34/583 (5%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-----------WDIVRDRVTTTPDIAT 436 + + Q + + Q+ + GS D + D + + A Sbjct: 161 KRARSPVQLEQELENSRAAQAEILRGSRDRLLQVIDTVPALVSATDAEGNYIFVNRFHAR 220 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 ++G +G + L DR + +YE + ++ Sbjct: 221 VMG--AGQGRNDAASQLR-----DR--------QVLETGLPTARYEESIADRYGMERILL 265 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 P + + + + DIT++KK+ + A+ D LTG+P+R + +L Sbjct: 266 TSKIPFYDDASGMRYVLTTSLDITDRKKAERELHHLAYYDQLTGLPSRSKLETEMQVLLR 325 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 D +++D+D++K IND G +GD +L + R+ L I+ARL G+ Sbjct: 326 QRGAD-GPPFAFVLMDLDRFKGINDTQGHTIGDLLLRKVALRLRTALPRAGIIARLGGDE 384 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+ ++ A A + A P L +R +V AS G + + T +LK Sbjct: 385 FA-IVHDVIDAADAAHMAERIVGIFARPFTLGDRVTSVGASAGVTLFPARGATFETLLKR 443 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LAMY AK+ G F ++ +++ L AVEN E L Y P I L Sbjct: 444 ADLAMYRAKNEGRCRYAFFDEEMEQAFAATTELEQALRRAVENEEFVLHYQPQIDLASGT 503 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + G+EALI+W P + F+ +AEE +I + ++ L R W+ I Sbjct: 504 LCGVEALIRWVQPGGDLVHPGCFLPLAEETGLIAPMTVWSLREACRQAARWQSDGIH--I 561 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ +++ + ++ PS ++L +E+ V+ NPE + L L+++ Sbjct: 562 RVAVNLSGVLFRQHDVHRLVVDATTEAGLDPSFLELELTETAVIENPESAGRQLAALQQM 621 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+S+ +DDFGT + L YL +P +K + + + AI+++II + KN+ Sbjct: 622 GVSVAIDDFGTGYASLVYLTRLPIHRLKIDRVFIQDLGSSPGSRAIVKAIIALGKNLGIR 681 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ I + ++ L C Q + P+ + L+ Sbjct: 682 VIAEGIERQDQLRWLEEQDCQEAQGFYFGYPVPPAKLQDLVDS 724 >gi|295681510|ref|YP_003610084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] gi|295441405|gb|ADG20573.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1002] Length = 918 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 121/545 (22%), Positives = 243/545 (44%), Gaps = 22/545 (4%) Query: 412 LGSGDIVWDWDI--VRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468 G+ V D V P I G G + + Sbjct: 370 DAIGNGVIITRPGPSGDVVEYANPAFEKITGYERPQNAGGDHSAR----PET-PGLWQQI 424 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + + +R + R A+ W + + + + + + +I + +D+TE +S + Sbjct: 425 GTAIAGQREATTLT-KSRRANGTEFWYQLYVAQVRDESEKVTHHISVVSDLTELIESRDL 483 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 ++ A +D LT +PNR + + + + D ++ ID+D +K IND LG G Sbjct: 484 LVRQARRDALTDLPNRVTLRELIDAAIL-----DGHEFALLFIDLDHFKDINDSLGHGAG 538 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D +L + RR+ + ++ R G+ F +L +++ + +++ P+ + Sbjct: 539 DRLLQEVARRLSASVGSDGVVTRYGGDEFVTMLKCSTGDAELSALLARVTQTLDEPVQID 598 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVM 706 + ++ V S+G + + +LK+A+LAMY K G N VE F S + R+ Sbjct: 599 DMQLRVRMSVGVSCYPQDGTDCETLLKHADLAMYRVKAGGRNGVERFAPSLAHEAAQRIA 658 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 + L AVE++ LVY P + + + G+EALI+W +G +S + F+ +AE++ + Sbjct: 659 LSHKLRNAVEHNGFELVYQPQVDIRSYRLTGVEALIRWHDADFGTVSPTTFIPLAEDIGL 718 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 I +I ++L+ W + + + +N++ L ++ ++ ++ + + Sbjct: 719 ISSIGEWVLQTACAQAKRWEEALPE--LRMSVNVSPSQLTSSDFGAVVRRALAASQLAAD 776 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 R++L +E ++ + L L IG+S+ +DDFG S L+YL D +K + S Sbjct: 777 RLELEITEGGLV--APGALPTLSALHDIGVSIAIDDFGAGYSSLAYLRSFHADRLKIDMS 834 Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 + G R I+ +II +A+N+ ++A+ + + L GC+ +Q + A+P Sbjct: 835 FIRGIGSSRADETIIGAIIALARNLRFEVVAEGVERAEQLAFLAEAGCEIVQGYYFAAPQ 894 Query: 945 GFNSI 949 +I Sbjct: 895 PAANI 899 Score = 49.2 bits (116), Expect = 0.004, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 59/249 (23%), Gaps = 17/249 (6%) Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339 ++ T +A + + + + LA+ + ++ + A L Sbjct: 126 RRLRGETAGWAWLLADIAVRARVADGRASIDSPELLAANRMLANIVTQLVTLRDAQTASL 185 Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + + + + + LA Sbjct: 186 RAASDSAT-----------RHLVIERTVLATTALAACFLFCYALIAHYRARLARQSARVI 234 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 R + +D+ + A+ G + + Sbjct: 235 ASESERRFRQYFDHHPLPMLIFDVETLSILAANRAAASQYGRTRHQL--CSLDMAALYAQ 292 Query: 459 NDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 D +F L + + R R +D ++ + + G A Sbjct: 293 ADLPSFLRDLHALLAAATTSGSAGVCRHRHSDGTPVYVELSYH--FLTYGHHRACFITAV 350 Query: 518 DITEQKKSL 526 D+TE+K + Sbjct: 351 DVTERKNAE 359 >gi|90578882|ref|ZP_01234692.1| hypothetical protein VAS14_04233 [Vibrio angustum S14] gi|90439715|gb|EAS64896.1| hypothetical protein VAS14_04233 [Vibrio angustum S14] Length = 1022 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 126/554 (22%), Positives = 256/554 (46%), Gaps = 10/554 (1%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 + S A S + V D + + G + +I+D+ Sbjct: 462 KKLQALSRAAEQSAESVIITDKNGFIQYVNTAYIKMSNKPLNQLIGSHSSICINDYIDDK 521 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 + ++ V + R + DN ++ I P+ +G+I YI + DIT+ Sbjct: 522 NEQDELISKLVSGQSIRHVIT---KEKDNNIIYIDYTISPIRGDDGNISNYIATSKDITD 578 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 + + A D LT +PNR F + + + + +++ID++ K++++ Sbjct: 579 RVSYENRLHRLAHYDALTQLPNRTMFTQDIAHSMKEAIRH-KAQIAIVLIDLELTKQLHE 637 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 + + +L+ +++RI L+ D+LAR+ + FGI++ S ++ I A + ++ Sbjct: 638 SMSNEDIEKILLIVSKRIKSNLRETDVLARIGSDEFGILIRSFHDLQTITQVAERLLQNT 697 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 P+++ + ++++ +IG A + ++ + K A +A+Y AK G++ F S Sbjct: 698 NAPLSIDSQVLSISTNIGIALSSDAESDPKLIQKYAHIALYRAKGLSGSNYCYFTESMEA 757 Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + + + DL +V + + Y P + + G+EAL++W + K S + + Sbjct: 758 ENIQRLILESDLRKSVGSDQYEYFYQPKVNANTHTLCGVEALLRWKNNKGEYRSPIDVIP 817 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 I E +I +++ + + SW+D+ + + INI+++ LL+ +L E + I+ Sbjct: 818 ILESSELIIDAGRYLINQACLQLKSWQDKGHFFD--VAINISARQLLEADLVETITQAIN 875 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 T +P ++L +ESV+M + + L LR++GI + +DDFGT S L+YL P + Sbjct: 876 NTGCNPHFLELELTESVLMCDVNFALKQLKSLRELGIKIAIDDFGTGYSSLAYLSRFPIN 935 Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + + + I I RSII +A N+ TI+A+ + E +K L +G + +Q Sbjct: 936 ILKVDREFIKDLPSNKDSITICRSIIELAHNLNLTIVAEGVETEDQLKFLESLGVEELQG 995 Query: 938 SHVASPLGFNSILK 951 + PL + Sbjct: 996 YYFDKPLPLSDFEN 1009 >gi|227822860|ref|YP_002826832.1| GGDEF family protein [Sinorhizobium fredii NGR234] gi|227341861|gb|ACP26079.1| GGDEF family protein [Sinorhizobium fredii NGR234] Length = 788 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 138/587 (23%), Positives = 264/587 (44%), Gaps = 19/587 (3%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + F +Q L + + S R + + +++ D + Sbjct: 203 ALAGNFNAMQDRLERE--ERELKSAHARATETYNLTPAMLFSRDAAGRLSAVSDYWLLAT 260 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G + G R++ +I + + + + + R AD +F ++ Sbjct: 261 GYLRDEVIG--RSFTDFIDPSWHEAYHQSAKATAVDGDDITELTLPFRKADGEFMTVL-- 316 Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558 I S+G+I + + D+T K++ A D+LTG+ NRQ F + L + + Sbjct: 317 ILETETSSGEIS--LSVMTDVTALKQAESRNHTQAITDHLTGLLNRQGFENALDEAILSA 374 Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618 ++ + ID+D++K IND G A GD VL RI L+ D++ARL G+ F Sbjct: 375 DQC-GMQLACLFIDLDRFKWINDNFGHAAGDAVLRQTVERIRAALRPEDVIARLGGDEFA 433 Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 I++ + + ++ ++ ++ ++ P+ + E+ V+AS+G + + + +S++L A+ Sbjct: 434 ILIAATDVAVLASEIGESICAALHEPMPITGNELFVSASVGVSVYPAHASGASDLLLKAD 493 Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 +AMY K G N ++ F + +R I++ + ++ PI+ L D +IV Sbjct: 494 MAMYARKRDGKNGLQVFDAGMLDAARERHEIEQCIEAGLKEDWFEAWLQPIVSLDDGQIV 553 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 G EAL++ DHP+ G + + + IAEE I I +LE+ R + + ++ Sbjct: 554 GFEALMRLDHPEKGLMPPGKIIGIAEETGTIGRIGDRVLEKAIRHLAAISALDGTQSTYL 613 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 +N + L + AL+ K SP RI + +E+V+M + +L +L + G Sbjct: 614 AVNFSPLQFE-LTLPHKLAALLLKHHISPQRIVVEITEAVLMLDNPEVHAVLKQLNEFGC 672 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-------KRIAILRSIIPMAKNI 909 + LDDFGT S LSYL P D VK + S + K +++ I ++ + Sbjct: 673 RIALDDFGTGYSSLSYLNRFPVDIVKVDQSFTRSLSSGAADVRRKSRMLIKGIRTISHQM 732 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 T++A+ I + + L ++G D Q + P+ + +L +L+ Sbjct: 733 GCTVVAEGIETDEQWQLLRKLGVDNGQGYLFSRPMPIDGMLTMLENE 779 >gi|257487818|ref|ZP_05641859.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008533|gb|EGH88589.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 703 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + + A DNLTG+PNR DR+ + + +M +D+D +K +ND Sbjct: 254 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 312 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + R+ L D LAR+ G+ F +L+ ++ A I Sbjct: 313 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 371 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++ ++ SIG + + T E+L NA+ AMYH K G N F ++S Sbjct: 372 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 431 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +++ + +DL A+++ + + Y P + +G EAL++W+HP+ G + +F+ +A Sbjct: 432 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 491 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I ++L+ R + W Q I +N+++ L + +++ Sbjct: 492 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 550 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + + L +E+ M + + S +L RL ++G+ L++DDFGT S L YL +P + + Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + AI+ +I+ + + + I+A+ + + + LT +GC +Q Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 670 Query: 940 VASPLGFNSILKLLKE 955 + PL L ++ Sbjct: 671 LGYPLPAEQFLDEIRA 686 >gi|126659225|ref|ZP_01730363.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] gi|126619530|gb|EAZ90261.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] Length = 635 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 121/443 (27%), Positives = 226/443 (51%), Gaps = 12/443 (2%) Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 + +AF D LTG+ NR+ F++ L + ++ + + V+ ID+D +K +ND LG Sbjct: 187 EAQLKHDAFHDKLTGLINRELFVNLLKQEMKTASVNSDYLYGVLFIDLDGFKMVNDSLGH 246 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 +GDD+L +++R+ ++ D +AR G+ F I+L + A + K+++ P Sbjct: 247 LIGDDLLKVVSQRLKTCVRSSDAVARFGGDEFAILLKNLKELSLAEVIAQRILKTLSQPF 306 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703 L E+ + ASIG ++E+L++A++AMY AK +G H + F Sbjct: 307 YLNNNEVAIGASIGMTFNIFKYNQATEILRDADIAMYQAKRQGKGHYQCFNPDMQALVFA 366 Query: 704 RVMIKEDLCLAVEN-------SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756 R+ ++ +L AVEN + L Y PI+ L +I G EAL++W HP G IS + Sbjct: 367 RLQLERELKKAVENIKNNEFSQQFSLYYQPIVHLKTRKINGFEALLRWQHPTEGWISPQK 426 Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQ 815 F+ IAEE +I + ++L+++ + + W Q + + IN+++ + E + Sbjct: 427 FIPIAEETQLINPLGWWILKQVCQQMSYWTKQFPNHDSLRVNINVSAIQFKQDNFVEQIG 486 Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875 +I ++ P +KL +ES + S L +L+ +GI L +DDFG S L+ L Sbjct: 487 LIIQESHLPPESLKLEITESYTLNTENYSLEKLQKLKDMGIHLCIDDFGVGYSCLNRLQE 546 Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933 +P +T+K + S + + + +++I+ +A ++E ++A+ I + ++ L +GC Sbjct: 547 LPVNTLKIDRSFLQKLNQCNPNLQFVKAILMLASSLEIEVVAEGIETKTQLQYLQELGCL 606 Query: 934 YIQDSHVASPLGFNSILKLLKER 956 Q + P+ N + L+E Sbjct: 607 LGQGYLFSKPIDSNQATQFLREE 629 >gi|327440116|dbj|BAK16481.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Solibacillus silvestris StLB046] Length = 835 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 124/578 (21%), Positives = 253/578 (43%), Gaps = 14/578 (2%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLAS 442 F +I+ + + E +W + I + + + +IL + Sbjct: 258 FGIIKDETYQTLLKKKLMEQNEGYKSIFDNLTSGIWMREKIGGKFLFASKGLESILEIPL 317 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502 +++ + W I + + Q+ +R+ + W++ + P Sbjct: 318 STLYEDSKAWYNMIQPVHLPELANGKKKMINGQ--SFQWIYRINSGSGTTKWLLEEVVPR 375 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 + +G I G+ DIT + + I + DNLTG+PN+QS ++ + + Sbjct: 376 LDDHGQITNIFGLVTDITYEIEKEHTINYLSNYDNLTGLPNQQSLFKKIDLMCE-----S 430 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 + ++ D+D++ IND LG +GD+ L +R+ +++ LARLS N F +I+ Sbjct: 431 DDPYAILYFDLDRFNIINDSLGYFIGDETLKFTAQRLEKIMPKESYLARLSSNDFIMIIK 490 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 + N ++ +A + K I P + + E+ ++ SIG + +LKNA A+Y Sbjct: 491 NYNTKKEVLQYAKKVIKKIREPFTIQDYELNISTSIGITFYPEEGREKLTLLKNAHTALY 550 Query: 683 HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK G N + + + D+ A+ N E L + P + + + G EA Sbjct: 551 KAKKDGKNTYKLSSDDEDLSSYKKYALDRDMRKAISNEEFELHFQPQVETGNGSLCGAEA 610 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 LI+W+H +WG +S EF+ +AEE MI I +++E++ + + W+++ P I I IN+ Sbjct: 611 LIRWNHKEWGLVSPGEFIPMAEENHMINGITDWVIEKVCQLLKEWKEKGL-PIIPIAINV 669 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + L + ++ + P ++ +E ++ + L+ +GI + + Sbjct: 670 PPIRFMKKGLFQHVKTQLENYGIDPFYLEFEITEDTLLNIESSVYSTIQSLKDLGIRIAV 729 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKD 917 DDFGT + L+ + + +K + + + I+ + + +AK++E ++A+ Sbjct: 730 DDFGTGYASLASIRKFKPNKIKIDKIFIDNINNEDKVDNGIICATLNLAKSLEMNVVAEG 789 Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + +K L + CD IQ + P+ ++K Sbjct: 790 VEEFEQLKFLKKNDCDVIQGYLFSKPVKKEMFEHIMKA 827 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 9/151 (5%) Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q + + A + W++ D++ + + +LGL + I Sbjct: 142 ELKQELMLWENHLNYAQQIAEIGSWEYVFNEDKLICSKNFYNMLGLD-YQKYISINKPFK 200 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPMSNSNGDILRYI 513 IH D D L + Y ++ RV + + + G + Sbjct: 201 QIHPEDLDISLQYLKKAI-YDGENYTHKVRVYHRKTKELKHLKVHAEVFF-EEGKPAKIF 258 Query: 514 GIANDITEQ----KKSLEGIL-CNAFQDNLT 539 GI D T Q KK +E + DNLT Sbjct: 259 GIIKDETYQTLLKKKLMEQNEGYKSIFDNLT 289 >gi|227820985|ref|YP_002824955.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain precursor [Sinorhizobium fredii NGR234] gi|227339984|gb|ACP24202.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain precursor [Sinorhizobium fredii NGR234] Length = 928 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 136/554 (24%), Positives = 257/554 (46%), Gaps = 29/554 (5%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-------HIN 459 +A+ + +D + + I L S+ G + + + + Sbjct: 379 LDIALENMTQGICLFDHADRLLISNRRCLEIFEL-PESLAGFGLTFREVLDRMCARTYPD 437 Query: 460 ---DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 G+ +F + ++ + + R P +G ++ Sbjct: 438 PAVAEAKSEAAYRKHRLEIAGKGGGDFVEKLSNGRSILVKHRTLP----DG---GWVSTY 490 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DITE+ S E I A D+LTG+PNR F L LD +A + + V+ ID+DK+ Sbjct: 491 EDITERLDSEEQISFLARHDSLTGLPNRLQFNSHLDEELD-AAVWFSRKVAVIGIDLDKF 549 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++ND+ G A GD VLV++ +R+ E L+ + +AR G+ F + E + ++ DF Sbjct: 550 KEVNDLHGHAAGDFVLVTIAQRMKEHLQEGEFVARFGGDEFAAVKRFE-DLSEVHDFLRR 608 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + + + E+ S+G A + T+ ++ NA+LAMY AK + + Sbjct: 609 IETCLQEEMRFGDFELKSGGSMGVAIYPQDAETADTLINNADLAMYRAKAALNQTICFYE 668 Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + R + DL AVE SEL L Y + +++G E L++W+HP+ G + Sbjct: 669 VSMDEAARGRRALANDLWEAVERSELALHYQVQKSVTTGDVIGYEVLLRWNHPERGLVPP 728 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 +EF+ +AEE I I ++L + R+ SW + I +N++ L + ++ + Sbjct: 729 NEFIPLAEECGAILPIGEWVLRQACREAASWDAEY-----KIAVNLSPVQLANGDVVSLV 783 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 +++ +T R++L +ES ++ + ER+ L L ++ +G+++ +DDFGT S L L Sbjct: 784 HSILVETGLDAKRLELEITESTIIDDKERALLTLRAIKALGVTIAIDDFGTGYSSLETLR 843 Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 PFD +K + S M+ + + AI+R+I+ + +++ ++A+ + + + L GC Sbjct: 844 AFPFDKIKLDKSFMSEVEGSPQAKAIIRAILALGHSLQVPVLAEGVETQKQLDILQAEGC 903 Query: 933 DYIQDSHVASPLGF 946 D Q + P Sbjct: 904 DEAQGYLLGRPAPI 917 Score = 78.1 bits (191), Expect = 7e-12, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 90/327 (27%), Gaps = 26/327 (7%) Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284 W+ I+ FG + +L++ ++ + A Sbjct: 48 IWLGAAGIASGFGIWATHFIAMLAYDPGVVLGYHTSLTTLSLVVAILLTTTALAIATYAK 107 Query: 285 ITFSGIACIAIL---------FCMSFYYPMVTASIARITLASIVLYYTYF--IIYHGMKG 333 + + +L M+ R + + VL F + +K Sbjct: 108 GRPAWLLGGLVLGAGVGCMHFLGMAALELPGFIRWDRTLVVASVLAGVLFEMVAIFAIKR 167 Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKR----------LDNDIIQPALVGGLVL--IVIL 381 + L + + L + +IQP + ++ L Sbjct: 168 DQSKAQLAATAAMTL-GIVVLHFTAMGAVTMEVEFATGIQEGMIQPHFLAFVLAGTAFFL 226 Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 + +I A + S+ E ++ D+ + G Sbjct: 227 LSAVLIAAGFARHAEILAVASEKEFSRFVGSVKDYAIYMLDVDGRVASWNAGAEANKGYT 286 Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 + + G N+ + D+ + G+ + E D W + I Sbjct: 287 AEEIVGK--NFACFYSPEDQAANLPARALRIALEAGQYETEGWRYRKDGTRFWAHVVIDT 344 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEG 528 + +G +I IA DIT++K+ + Sbjct: 345 IVGEDGGHAGFIKIAKDITKRKEDADR 371 >gi|325272685|ref|ZP_08139039.1| hypothetical protein G1E_07058 [Pseudomonas sp. TJI-51] gi|324102196|gb|EGB99688.1| hypothetical protein G1E_07058 [Pseudomonas sp. TJI-51] Length = 681 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 113/436 (25%), Positives = 220/436 (50%), Gaps = 7/436 (1%) Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + ++ A DNLT +PNR DRL + + V+ +D+D +K +ND G Sbjct: 243 ANSELVQLALHDNLTRLPNRILLNDRLQQAIHKAIR-QKSHFAVLFMDLDGFKAVNDTYG 301 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 GD +L+ + +RI + + D +ARL G+ F +++ A A + ++I +P Sbjct: 302 HHTGDQLLLQVAKRINDAKRGEDTVARLGGDEFVLLIDP-GEPEDAAMLAQRLVENIRLP 360 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704 L + + V+ASIG A + + +T E++ NA+ AMYHAK +G + F + + Sbjct: 361 YVLGRQTVHVSASIGIAIFPENGLTEHELMVNADAAMYHAKEQGRDGYCFFEKAMNVNAH 420 Query: 705 VMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + ++ +DL A++ +E L + P + + ++G+EAL++W+ P +G + F+ +AE Sbjct: 421 LQLEMQQDLRCALDRNEFILHFQPKMLAPNGPMIGVEALLRWNKPGFGLVPPVRFLPLAE 480 Query: 763 ELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKT 821 +I I +++ R + W+ I +NI++ L +L + ++ + + Sbjct: 481 RTGLIVPIGSWVIHEACRQMAEWQALGEGKDEWSIAVNISTVQLAHAKLVDVVRNALQSS 540 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P + L +ES M + E + + L +L +G+++++DDFGT S L YL +P + + Sbjct: 541 GLPPRFLTLEVTESTAMRDAEAALIALDQLAALGVNISIDDFGTGYSSLLYLKRLPANEL 600 Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + +T + AI+ +I+ + K + I+A+ + + LT +GCD +Q Sbjct: 601 KIDRGFITELAKCNDDAAIVSAIVALGKTLGLRIVAEGVETAEQQQMLTELGCDILQGYL 660 Query: 940 VASPLGFNSILKLLKE 955 + P+ +L+ L Sbjct: 661 LGKPMSAERMLESLSA 676 >gi|326318167|ref|YP_004235839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375003|gb|ADX47272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 886 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 133/584 (22%), Positives = 248/584 (42%), Gaps = 26/584 (4%) Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442 G + ++ + A+ D + I Sbjct: 301 GGFAMAYLRRISRARNDLARSKSTLEQALGSMVSGFVLLDSGHRVLQWNQRYEEIFPWLR 360 Query: 443 GSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVRA----ADNQFHWM 495 M + + + R + + +R LQ E R + F + Sbjct: 361 AMMEVGLP-FRSVLEATSRYYLPDADEAMRREWVEQRLLLQRETRGTHEQMLPNGHFIQI 419 Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555 R P + +D+T+ +++ I AF D LTG+PNR+ LDRL L Sbjct: 420 TERATPE-------GGLMITYHDVTDMRRASAEIENLAFYDPLTGLPNRRLLLDRLHQAL 472 Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615 + ++ +D+D++K +ND G +GD +L + R+ + D +ARL G+ Sbjct: 473 ATAQRSHQF-GALLFLDLDQFKTLNDTQGHEMGDLLLQQVALRLRVCARPADTVARLGGD 531 Query: 616 RFGIILISE-NNSLKIADFAIAM----RKSIAMPINLLEREITVTASIGFASWTSSKITS 670 F +++ ++ + A A + ++A P +L ++ T S+G A + + T+ Sbjct: 532 EFVVMMSDLSHDRQEAATIARRIGEKILHAVAQPYHLQQQMHQNTCSVGAAIFGDQRQTA 591 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII 728 +++LK A++AMY K + GN + F ++ DL A+ E L Y P Sbjct: 592 ADLLKQADIAMYQVKAQRGNALCFFDPQMQVVISQRARLESDLQAAIAAQEFVLYYQPQF 651 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 E++G E L++W HP+ G I+ EF+ +AEE +I I ++L + +W Sbjct: 652 S-RAGEVIGAEGLLRWKHPERGLIAPGEFIAVAEESELIVPIGQWVLRTACAQLAAWSGD 710 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + + I +N++++ + + + P ++L +ES+V+ N + S + Sbjct: 711 PRLAGLHIAVNVSARQFRHPDFVTSVVEALQHAGVKPHLLELELTESLVLDNVDDSVAKM 770 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMA 906 LR G+ ++DDFGT S L+YL +P +K + S + ++ I+++II MA Sbjct: 771 HLLRTKGVRFSVDDFGTGYSSLAYLTRLPLHQLKIDQSFVRNLGKRPTDDVIVQTIIGMA 830 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950 +N++ +IA+ + + L R GCD Q A P+ L Sbjct: 831 RNLDLEVIAEGVETQEQRDFLDRHGCDLYQGYLFARPMPAQDFL 874 >gi|113972075|ref|YP_735868.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] gi|113886759|gb|ABI40811.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. MR-4] Length = 706 Score = 466 bits (1199), Expect = e-128, Method: Composition-based stats. Identities = 120/557 (21%), Positives = 232/557 (41%), Gaps = 12/557 (2%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRD 462 E + + S + V+ D + + I G ++ + G +L + Sbjct: 154 EIMATTLEESAEAVYITDADNRILAVNKAMCRICGYSAEQLIGKTPEFLEAKLLPPGQET 213 Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522 + + + RG E + +D R + + + + I +DI+ + Sbjct: 214 DCQAAMK-----LRGFWHGETLKQRSDGSHFPAWQSSRRIETDDNALYH-VNIFSDISTK 267 Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K + A D LTG+PNR L + LD D + +M +D++ +K IND Sbjct: 268 KLLETQLTTRAMYDTLTGLPNRYHLKQILNSALDKLKDDPSALGALMFLDLNGFKNINDS 327 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 G ++GD VL + R+ +AR+ G+ F ++L + +I FA + Sbjct: 328 FGHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQECSCKEEIQLFAEQILSLFD 387 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFR 701 P + ++ + SIG A + + + +++ A+ AMY AK + +S Sbjct: 388 SPFEIEGQKFFLGTSIGIALFPTHSDQAGQLISLADTAMYSAKKNQPHLVFYDKVMSQAA 447 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++ + +L A + L Y I+ L + +G EAL++W + ++EF+ + Sbjct: 448 ELKLKLINNLRHAHSLKQFNLAYQAIVDLHTNKPIGAEALLRWQKSPNEHYEAAEFVPLL 507 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I I + LE+ + WR P + +N++ L + + + + Sbjct: 508 EETGLIITIGQWALEQACKQAAIWRASY-QPDFKVSVNVSPLQLEHVDFVGQVISALEMV 566 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + L +ES ++ PE +R L R++ +G+ + +DDFGT S LS LG +P D+V Sbjct: 567 ALPAEALILEITESALLRQPELARQTLERIKALGVGIAIDDFGTGLSSLSRLGTLPIDSV 626 Query: 882 KFNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 K + + + +I+ +A+ ++ +A+ I + +T MG + Q Sbjct: 627 KIDAEFALRLHDASGQKLCHAIVQLAQALDIHFVAEGIETQQQKDIITHMGQGFAQGFLF 686 Query: 941 ASPLGFNSILK-LLKER 956 P + L ER Sbjct: 687 GYPSSVEQFTQAFLAER 703 >gi|194365691|ref|YP_002028301.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia R551-3] gi|194348495|gb|ACF51618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Stenotrophomonas maltophilia R551-3] Length = 919 Score = 466 bits (1199), Expect = e-128, Method: Composition-based stats. Identities = 132/548 (24%), Positives = 238/548 (43%), Gaps = 10/548 (1%) Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479 + ++ + T + I GL + + L + R F L + Sbjct: 368 EIEVQTRHMQWTEECYRIHGLRKEPI--SLDQALALYTEDSRSAFEAALVR-IAGGGLPE 424 Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539 Q + W+ + I +G R++ + DIT ++++ E I A D LT Sbjct: 425 QLDLCFYRQSGLRVWVQVLIELDR-RDGLPPRFVVLFRDITREREANERIELLAHYDLLT 483 Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599 G+PNR ++ ++ + D ++ ID+D +K IND G A GD +L + R+ Sbjct: 484 GLPNRVLLGEQTAEAIEEA-RDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRL 542 Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659 + L+ D+ R SG+ F ++L A + S+A P+ + + V AS+G Sbjct: 543 HQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGDTTLKVGASVG 602 Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN 717 A ++ +L+ A+ AMY AK G N + + + R+ ++ L A+E Sbjct: 603 IAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRRLELEHALHGAIER 662 Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 E L Y P++ E +EAL++W P G S +EF+ IAE+ I I ++L Sbjct: 663 EEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNE 722 Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837 R I+W I +N+++ L D E + + + P R++L +ES + Sbjct: 723 ACRQAIAWDRAGLCFD-RIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESAL 781 Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895 + + + R L + G+ L +DDFGT S L+YL P +K + S + G Sbjct: 782 IRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGT 841 Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + ++I+ + + ++A+ + + L R GCD IQ + PL + + L++ Sbjct: 842 AEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQ 901 Query: 956 RFPLVKNT 963 + T Sbjct: 902 QHAAPGRT 909 Score = 98.5 bits (244), Expect = 5e-18, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 11/131 (8%) Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465 R LA+ +G +WDWDI DRV TP + L +H D R Sbjct: 107 RWELALDSAGHSLWDWDIPSDRVVRTPALGD----------ETATEILARVHSEDIGQVR 156 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524 LD + + +FR R AD Q+ W++ R R + ++G LR +G DI +QK+ Sbjct: 157 VALDQHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQ 216 Query: 525 SLEGILCNAFQ 535 + Sbjct: 217 LEGLLQEQQLH 227 Score = 74.6 bits (182), Expect = 8e-11, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 9/155 (5%) Query: 398 QGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 +G+ + + S A + W +D +P++ ++L L GS+ G R WL + Sbjct: 218 EGLLQEQQLHLSEAQRIASMGSWSFDPDSGLFWWSPELRSLLSLEQGSVPGQ-RRWLKQL 276 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H R R R E + + + + ++P+ +++G R +G Sbjct: 277 HPRSRGALRAAWRRVWRDGRAA-NIELELTRGNEPSQHLRLWMQPLLDTDGQPKRLLGQV 335 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551 +ITEQ ++ I T + NR S L R+ Sbjct: 336 QNITEQHQTDALIRWR------TELLNRVSALGRI 364 >gi|152968250|ref|YP_001364034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kineococcus radiotolerans SRS30216] gi|151362767|gb|ABS05770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kineococcus radiotolerans SRS30216] Length = 708 Score = 466 bits (1199), Expect = e-128, Method: Composition-based stats. Identities = 147/579 (25%), Positives = 252/579 (43%), Gaps = 10/579 (1%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 V + Q V + +R V S DI D R +P Sbjct: 133 VGGLLVVTWQDVTDLRRAEAARVAGEQRFRALVEHSSDITVVVDRERVVTYASPSTQRFT 192 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF-RVRAADNQFHWMII 497 G++ G +H DR+ + +LD G++ E RV AAD + W+ Sbjct: 193 ADGDGTLAGTPYGLP--LHPADRELAQELLDRAYAAPPGQVLRERARVIAADGRTRWIEA 250 Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557 ++ G + + DITE++ + E + A +D LTG+PNR+ F L L Sbjct: 251 EATNHLDTPG-VGGVVINCRDITEEQHAREALAAEAVRDPLTGLPNRRYFTQALQHALAR 309 Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617 SA ++++D+D +K +ND G GD +L +L +R+ L+ D + RL G+ F Sbjct: 310 SARSGQP-VALLLLDVDHFKHVNDAHGHPAGDRLLTTLAQRLRSSLRPSDTVCRLGGDEF 368 Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677 ++ ++ + A + + L E+ V+ SIG ++ +L A Sbjct: 369 VVLAEDLHHLDEALLLAERVNVAAGGTYLLDHGEVRVSVSIGVSTAVGPG-DPDALLSTA 427 Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735 + A+Y AK RG + E F+ R+ ++ DL A EL L + PI+R D + Sbjct: 428 DHALYEAKRRGRDRAEVFQPQLREHLLHRLALQRDLRRATTRDELELYWQPILRASDHAV 487 Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795 G EAL++W HP+ G ++ + F+ AE+ ++ I ++L A W + P Sbjct: 488 TGAEALLRWHHPEHGLLTPAAFIPAAEDAGLMPVICEWVLHHAAEQSARWARELADRP-Q 546 Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855 + +N+ L D +L + A+ + + L SE ++ + R + LL LR G Sbjct: 547 VFVNLDRHQLHDPDLLSRVGAIADAHHADLTGLTLEVSERILTEDLPRIQPLLHLLRAGG 606 Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTII 914 +SL LDDFG + L++L +P D +K + S AI+ +++ +A + + Sbjct: 607 LSLALDDFGAGNTALTWLQRMPMDVLKLDRSFTAALGDPASEAIVDAVLHLAPRLGIATL 666 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 A+ + + L +GCDY Q H A P + L Sbjct: 667 AEGVETAAQLATLVDLGCDYTQGFHHARPQPARELTAAL 705 >gi|237746617|ref|ZP_04577097.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] gi|229377968|gb|EEO28059.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacter formigenes HOxBLS] Length = 905 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 141/549 (25%), Positives = 254/549 (46%), Gaps = 12/549 (2%) Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471 + D ++ D R + + GL + G +L I D + + D Sbjct: 363 ENNRDGIFIADQDRRITVVNRQFSRMTGLTQEKIMGNKPWYLQA-DIADSTCYSQLCDVI 421 Query: 472 VGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530 + +E + + + ++ + + + I+ YIG DI++ + + Sbjct: 422 ACTDHEEMAAFE---KNRQEKIEPTHLTVKIVRDMDDRIISYIGTLLDISQNEFLEDHTR 478 Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590 D LTG+PNR LDRL L + + VM +D+D++K IND LG A+GD Sbjct: 479 YMIEHDFLTGLPNRILLLDRLGQTLIAAERNRRRAA-VMFLDLDRFKHINDTLGHAMGDR 537 Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650 +L + R+ + ++ D ++R G+ F I+L N+ +A A + +++ + Sbjct: 538 LLQQVAFRLTKCVRKNDTVSRQGGDEFVILLNDIGNADDVALVANNIMHALSQNYQIENY 597 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIK 708 E+++T SIG A + +LKNA+ AMYHAK G N + F +R ++ Sbjct: 598 EMSITPSIGIALYPEDGKDIDTLLKNADTAMYHAKEGGRNAYQFFNAQMNLHLVERTRLE 657 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 DL A++NS +L Y PI+ + G+EA ++W+HP++G + F+ +AE+ +I Sbjct: 658 NDLKAALQNSGFFLEYQPIVDTQSGHMTGVEAFLRWNHPEFGILMPPRFLGVAEDTGLIG 717 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I +++ + WRDQ P + IN++S L L ++ + + +P + Sbjct: 718 PIGEWVIRTACKQAGEWRDQGF--PKTVSINLSSIQLKQKNLLSTIRNALKENGLAPDFL 775 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +E +M N + LL LR +GI + LD+FG CS +S+L P +K + + Sbjct: 776 ELQITEGSIMENVKTVSDLLHELRAMGIRIVLDNFGNGCSSISHLKKAPIGKIKIDPVFI 835 Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 G+ + + +I+ MAKN+ + A + ++ L +GCD Q V+ L Sbjct: 836 HALGTGSEDADVAGAIVAMAKNLRLKVSAGGVETDLQALRLKEIGCDEYQGYLVSPSLSA 895 Query: 947 NSILKLLKE 955 I L+ Sbjct: 896 GEISPFLEA 904 Score = 70.0 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 10/129 (7%) Query: 403 DGER--QSLAVLGSGDIVWDWDIVRD------RVTTTPDIATILGLASGSMHGPIRNWLP 454 + ER LA+ S +W + RD R + + G P ++ Sbjct: 223 EKERHFYQLAIERSDIGLWKATVARDTPMDALRFHFSDKSGDLFGF-VTFADIPFSGFMN 281 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 IH + RT L+S + + G E RV + F W+ + + + +R G Sbjct: 282 TIHPESAEKIRTALNSAINGKTG-FDIEIRVNKPNGDFAWINWKCCLIEEDDTGKIRLEG 340 Query: 515 IANDITEQK 523 IA DIT K Sbjct: 341 IAADITSYK 349 >gi|319778115|ref|YP_004134545.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171834|gb|ADV15371.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 878 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 140/622 (22%), Positives = 260/622 (41%), Gaps = 44/622 (7%) Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS-QGIFSDGERQSLAVLGSGDIVWD 420 + N+ + ++++ V + + + R LA+ SG VW+ Sbjct: 268 IPNNAWMLRGLIAFAGALVVLPILVAGRLFGERQKNYAELRRLSGRLELALEASGIGVWE 327 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 D+ + + I G + +W IH D D R D+ R G Sbjct: 328 HDLATKELLWDDRVNQIYGKPADGKPRGYEDWAMAIHPEDFDRARQEFDAAAE-REGPYS 386 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-------------------- 520 ++RV AD + R + G + IG D+T Sbjct: 387 SQYRVLLADGTTRHVRTRAAFFQDIGGTP-KMIGAEWDVTSDVLLNETLIRERQLSESKN 445 Query: 521 -EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 E K + + A D LTG+PNR+ + L + R ++ +D+D++K+I Sbjct: 446 AELKVAKAHVEHVALHDPLTGLPNRRYLDELLAE-----KSVTGTRTALLHLDLDRFKQI 500 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 ND LG A GD +LV ++ I D +AR+ G+ F ++ ++ ++ + Sbjct: 501 NDTLGHAAGDAMLVHASKVIKVNTGPGDFVARIGGDEFVVVSHGRDDKQ-LSALGDRIIT 559 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P++ SIG A+ + ++L NA+LA+Y AK G N E F Sbjct: 560 QMRRPVDFQGNPCRFGVSIGIAA----GTDAKQLLVNADLALYRAKGSGRNRHEFFDEEL 615 Query: 700 FRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 I +++ +E +E Y P EIVG+EAL +W HP+ G ++ + Sbjct: 616 QSEIVRTKQIADEILGGLERAEFTTYYQPQFDARTLEIVGVEALSRWKHPERGILAPQSY 675 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEEL ++ I+ +LE+ + W + P + +N+++K L D +L +G++ L Sbjct: 676 LKVAEELNVVAVIDRAVLEQALENFDQWSNSGLKIP-HVSVNVSAKRLEDKDLIDGLRKL 734 Query: 818 ISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876 + ES+ + N + L ++++GI + +DDFGT + + L + Sbjct: 735 A----IRKGTVSFELVESIFLDENDDLVTWNLEHIKELGIDIEIDDFGTGHASIVSLLKL 790 Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934 +K + L+T T+ + ++ SII + K++ +IA+ + + L +GCD Sbjct: 791 QPRRLKIDRQLITPVTQSIPQRQLVSSIIEIGKSLGIEVIAEGVETNDHARILKELGCDI 850 Query: 935 IQDSHVASPLGFNSILKLLKER 956 +Q P+ + + R Sbjct: 851 LQGYVFGRPMDAKAFTAFAQSR 872 >gi|320322820|gb|EFW78913.1| sensory box protein [Pseudomonas syringae pv. glycinea str. B076] Length = 969 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + ++ A D+LT +PNR + L I+ + + +V+ ID+D++K +N Sbjct: 521 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 579 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ + I A + + Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKALANHVVE 639 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL +++ V+AS+G A++ + +LKNA+ AMYHAK G N+ + + + Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATI 699 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A++ E L + P + L D I GLEAL++W+HP+ G +S +EF Sbjct: 700 NESLVRRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 759 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + +++ + I SW ++ N+ + I IN++ + L L E ++ + Sbjct: 760 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 818 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 819 VEGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + + L GCD + Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 938 Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960 Q + P+ ++K L Sbjct: 939 QGYLFSKPVIIEECASMIKSSRSLS 963 Score = 50.7 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ AV + +++ + I +A +L + G + +L+ ++ Sbjct: 157 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215 Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434 A ++ S L A+ IV + Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492 + + + I++ + E R+ + Sbjct: 275 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 326 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550 W I P+ + G + +YI I DIT +K+ IL N+ + NL + +Q+ + Sbjct: 327 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 386 Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572 L L + + ++V+D Sbjct: 387 SALGELAALTAAQGLTLSKAALLVVD 412 >gi|118497063|ref|YP_898113.1| signal transduction protein [Francisella tularensis subsp. novicida U112] gi|194324298|ref|ZP_03058072.1| EAL domain protein [Francisella tularensis subsp. novicida FTE] gi|118422969|gb|ABK89359.1| signal transduction protein with a PAS, a PAC, an EAL and a GGDEF domain [Francisella novicida U112] gi|194321745|gb|EDX19229.1| EAL domain protein [Francisella tularensis subsp. novicida FTE] Length = 772 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 134/564 (23%), Positives = 249/564 (44%), Gaps = 13/564 (2%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YI 456 + I D E V S D V D + + + G G L Sbjct: 214 EKIDKDKEIADYIVNNSDDSVMVTDQYLNIIYVNKAFEAVTGYTKTEALGNTPAMLSSRK 273 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H D+ + + G + E R + + +I + N ++ Y+ + Sbjct: 274 H--DKYFYERMWTKLKSQ--GAWEGEIWNRRKSGELYLTWAKILTVK-KNSQVIYYVSVE 328 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI++++ L+ I A+QD LTG+ NR F ++ ++ A T+M +D+D++ Sbjct: 329 TDISKRRIRLDEIEKYAYQDMLTGLFNRYYFESHISDHIEKGARQRQ-PFTLMFLDLDRF 387 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++NDV G GD +L+S++ R+ EL++ D++ARL G+ F + + A Sbjct: 388 KEVNDVYGHQAGDKLLISVSNRLKELVREKDLVARLGGDEFLLFFVDMT-IDNAIKKAHK 446 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + IA P ++ +++ ++ASIG ++ +LK A+ AMY AK G N + Sbjct: 447 VVEYIAKPYDIDDKQFIISASIGVVNYPQDGTDFEHLLKYADAAMYRAKDLGRNRFFLYN 506 Query: 697 VS--SFRSDRVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + IK+ L A EN + +++ P L +I G+E L + +HP G + Sbjct: 507 QEISDKVCYDLKIKQVLNDAFENTDYIQVLFQPQYDLKQRQIYGIEILSRINHPDLGVVC 566 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +F+ I + + + + + +L++ + I S D I N+ ++ + C Sbjct: 567 PKDFIPILQSINQMPSFDKIVLQKACQQISS-NDMMLEQNFRISQNVTVPVIMSEQYCRE 625 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +I + SP R E++ + + + + L+K GIS+ +DDFG+ S LSYL Sbjct: 626 FIDIIKQYKISPQRFSFEVIENIAIDDYKTACKNFCLLKKEGISVEIDDFGSGYSSLSYL 685 Query: 874 GYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P +K + + + I R+II +A+++ +IA+ + + L +MGC Sbjct: 686 AQFPITVLKIDSFFVQNIHHPREEKICRAIISLAESLNLKVIAEGVETKHQADTLYKMGC 745 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 Q + PL + +L K Sbjct: 746 YLHQGFLYSQPLSYEELLLKFKNH 769 >gi|284050982|ref|ZP_06381192.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira platensis str. Paraca] Length = 592 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 124/440 (28%), Positives = 229/440 (52%), Gaps = 5/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + + + +L A D LT +PNR F+D+++ ++ +N V+ +D D++K +N Sbjct: 149 QLQIANYKLLEMALHDPLTKLPNRALFMDKISLVIKSVKEGNNHGFAVLFMDCDRFKVVN 208 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG VGD++L+++ RI ++LK D+L+RL G+ F II+ N + + A ++ + Sbjct: 209 DSLGHTVGDELLIAIGDRIQKILKNNDLLSRLGGDEFAIIVHDVNEIEPVRNLANSILEV 268 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698 ++ P + REI + SIG +L++A+ AMY AK G F + Sbjct: 269 MSCPFQIYSREIFINMSIGVVLSNRDYEQPEHLLRDADTAMYRAKALGRGQYHIFDPAMH 328 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 D + ++ DL A+EN EL Y PII L +I +EAL++W HP+ G + F+ Sbjct: 329 KEALDLLGLETDLRRAIENQELIPYYQPIINLETGKISSMEALVRWQHPQRGLVPPGMFI 388 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817 +AEE+ +I I ML + +W++Q + + +N++ + +L + + Sbjct: 389 PLAEEMGIITTIGTLMLVEACHQLKNWQEQKLVDESVSMSVNLSVRQFTQADLIATVDDI 448 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++++ +P ++L +ES ++ N + +R +L + R I L+LDDFGT S LSYL P Sbjct: 449 LAESGLNPKCLRLEMTESAIVENTQTARTILTQFRDRHIGLSLDDFGTGYSSLSYLHAFP 508 Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S ++ + + ++ +II ++K + +A+ I + +L + C+ Sbjct: 509 VDTIKIDKSFVSLLDGTPENLGLIPAIIGISKTLNMVAVAEGIETAEQLAQLRELECNSG 568 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + PL + +LL Sbjct: 569 QGYFFSRPLPATQMAELLAS 588 >gi|39934196|ref|NP_946472.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|192289722|ref|YP_001990327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] gi|39648044|emb|CAE26564.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) [Rhodopseudomonas palustris CGA009] gi|192283471|gb|ACE99851.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris TIE-1] Length = 776 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 139/698 (19%), Positives = 280/698 (40%), Gaps = 48/698 (6%) Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333 + W + + + + +A+ V + + Sbjct: 87 EADVWERRYRLGAIAHGISLGAWSLVVLLGTDDSAAHM-----LCVATVVAYTSAGVGRT 141 Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393 + R + +L I + + L L+ V I + L Sbjct: 142 FGRPQIFHLQVLLSCGPLIFAMVRVGG-------VYYLTLALLSAVFFISIRHLTSSLQR 194 Query: 394 GYFSQGIFSDGE-----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448 Y + I + E + A+ + + A ++ L + G Sbjct: 195 IYLNAWIGREREAALANQFDTALNNMPHGLCMFRADGRLAVMNHRFAEMMRLRDELVKGS 254 Query: 449 IRNW--------LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + I + ++S + + E + + Sbjct: 255 PTATEIVSACVAIGAISAASGRLILSEIESALAGEIVTVGDETI-------PRSLCWTFQ 307 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 PM++ + + DITE++ + I+ A D LT +PNR SF D + IL+ Sbjct: 308 PMADG-----GAVVLIEDITERRNAEARIVHLARYDELTALPNRVSFRDEIERILEAEHG 362 Query: 561 DDNLRP-TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 R ++ ID+D++K+IND LG GD +L S+ R+ ++L+ D +AR G+ F + Sbjct: 363 RGKTRLSALLFIDLDQFKQINDTLGHPCGDRLLCSVAERLRDMLRPDDYVARFGGDEFVV 422 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 + ++ A A + ++ + + + ASIG A + + +LKNA++ Sbjct: 423 FQQNIASNEDAAALARRIVDRLSDRYLIDHHVVEIGASIGIAMTSP-GTKADILLKNADM 481 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 A+Y AK G + FR ++ ++ DL A+ N E L Y P++ L +I Sbjct: 482 ALYRAKADGRGNYCFFREEMAQTVEARRILELDLRKALANEEFELYYQPLVNLKSGKITT 541 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++W+HP G +S + + +AE++ +I + ++L + + + W + P+ + Sbjct: 542 CEALLRWNHPVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACMECMLWPE-----PVSVA 596 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 IN + + ++ ++ + + SR+++ +ES ++ N + + L +L G+ Sbjct: 597 INFSPQQFHQRDVLTEVRYALEVSGLPASRLEIEITESSLLRNTQWTHDALQQLHAEGVR 656 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAK 916 ++LDDFGT S LSYL P VK + S + G R +LR + ++ ++ +++ + Sbjct: 657 ISLDDFGTGYSSLSYLHSFPLQKVKIDRSFLEGIDSDRPLTLLRGVARLSSDLGMSVVVE 716 Query: 917 DIYGEIDIKELTRMG-CDYIQDSHVASPLGFNSILKLL 953 I ++ ++ G Q + P+ I +LL Sbjct: 717 GIETNEQLELISADGTVTEAQGYLFSRPVPAQRIRQLL 754 >gi|167032364|ref|YP_001667595.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gi|166858852|gb|ABY97259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 818 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 127/590 (21%), Positives = 249/590 (42%), Gaps = 15/590 (2%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425 + +++I I + +LA F+ + + ER + + GD V D+ Sbjct: 206 VLLITNLLTAMVLITIAWRRSSKLLAQRQAFASALQEEKERAQITLQAIGDAVITTDVEG 265 Query: 426 DRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEF 483 P + + G P+ + + R++++ + +G ++ Sbjct: 266 SIGYMNPAAEQLTHWQASQALGLPLSAMFSLVDEQAEEEGRSLVEQVLSGSLKGGAEHAR 325 Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543 ++ D + + P+ S+G + + + +D+T++++ + + A D LTG+ N Sbjct: 326 LIQRLDGSTVSINLVGSPIV-SDGQVSGIVLVLHDMTQERQYIANLSWQATHDALTGLAN 384 Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603 R+ F RL L+ A R ++M +D+D++K +ND G A GD++L + + L Sbjct: 385 RREFEYRLEQALNGLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGL 443 Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFAS 662 + D LARL G+ FG++L + + A +R+ + R T SIG Sbjct: 444 REGDTLARLGGDEFGVLLENCP-PDQAERIAEQLRQMVQSLHFVWKGRPFVTTVSIGLVH 502 Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENS 718 + T L+ A++A Y AK +G N V+ + R + + L +A+E + Sbjct: 503 MAQAPGTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGEMAWIQRLHVALEEN 562 Query: 719 ELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777 L I L E +E L++ I S F+ AE ++ A++ +++ Sbjct: 563 RFCLYAQEIAPLKSFEGPGHIEILLRLHDESGRTILPSSFIPAAERYGLMTALDRWVVRN 622 Query: 778 IARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836 + I D+ P+ I IN++ + D++ E +Q L + P I +E+ Sbjct: 623 VFLVIRQCLDEGREGPLSICAINLSGSSIGDDKFLEYLQRLFVEYAIPPRMICFEITETS 682 Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894 + N + + L+ +G +LDDF S +YL ++P D +K +GS + Sbjct: 683 AIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLKIDGSFVKDMLDDPV 742 Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 A++ I + + IA+ + + + L +G DY Q + P Sbjct: 743 NRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLIERPQ 792 >gi|240140850|ref|YP_002965330.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) precursor with PAS sensor [Methylobacterium extorquens AM1] gi|240010827|gb|ACS42053.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) precursor with PAS sensor [Methylobacterium extorquens AM1] Length = 563 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 120/479 (25%), Positives = 214/479 (44%), Gaps = 31/479 (6%) Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 RVR + + P+ + D+TEQ A Q+ LTG+ Sbjct: 83 VRVRLTLGGDRRVEAALAPL-----SAGGFAITFEDVTEQ----LRGAALARQEPLTGLC 133 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR DRL L +A V+++D+D++K +ND LG VGD +L + R+ Sbjct: 134 NRVGLHDRLDAALIEAART-GAPLAVLMLDLDRFKTVNDTLGHPVGDALLRKVAERLRRA 192 Query: 603 LKFPDILARLSGNRFGIILIS------------ENNSLKIADFAIAMRKSIAMPINLLER 650 + D++ARL G+ F I+ + A + + + Sbjct: 193 TRSGDLVARLGGDEFAILQVDPQVGPQGSPHIGVEQPHAAEALARRLVDLVGRTYVVDGH 252 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708 + V S+G A + + ++LK+A+LA+Y AK G F + + ++ Sbjct: 253 MLNVGVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPAMNAQMQARRGLE 312 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 DL A+ + L + P I+L ++ G EAL++W+HP+ G +S + F+ +AEE+ +I Sbjct: 313 IDLRRAMALKQFDLAFQPQIQLESGDVTGFEALLRWNHPERGPVSPALFIPLAEEIGVIV 372 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++L R+ W P I +N++ L E + ++++T P+R+ Sbjct: 373 GIGEWVLRTACREAARWP-----HPASIAVNLSPVQFRGGRLVETVTNVLAQTGLDPARL 427 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +E ++ N + +L LR +G+ +++DDFGT S LSYL PFD +K + S + Sbjct: 428 ELEITEGALLENTDSVLDVLNGLRALGVKISMDDFGTGYSSLSYLQKFPFDKIKIDQSFV 487 Query: 889 TGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 G AI+R+I + ++ A+ + + + GC +Q P+ Sbjct: 488 RGMEGNAECGAIVRAIARLGASLGMRTTAEGVETATQLDAIRAEGCTEVQGYLTGRPMP 546 >gi|300854666|ref|YP_003779650.1| hypothetical protein CLJU_c14800 [Clostridium ljungdahlii DSM 13528] gi|300434781|gb|ADK14548.1| conserved protein with a sensory box/GGDEF and EAL domain [Clostridium ljungdahlii DSM 13528] Length = 557 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 131/554 (23%), Positives = 250/554 (45%), Gaps = 17/554 (3%) Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466 + A+ + W+I + + I G ++ + D+ Sbjct: 15 YTYALNTGNVGICKWNIDTGEMAIS---EKITGYKFNAIKSMNEFINIITYEKDKMMAIQ 71 Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN-DITEQKKS 525 LD ++ Q FR++ W++++ + + + +G+ +IT K Sbjct: 72 DLDDYINGSLEFYQSTFRIKTKCGDIKWVLLKGKIFKDET-ESSGVLGVLIFNITNMKFY 130 Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585 D+LT +PNR+ FL +L + + + ++ IDI+ K IN G Sbjct: 131 ERW-------DSLTNLPNRRFFLIKLNNSIKTAKIHNK-SGALIYIDINNLKIINHNFGH 182 Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645 GD +L S + I LL L RL G+ F I++ N+ +I + K + Sbjct: 183 RFGDWILKSFAKSITVLLGKRGELFRLEGDEFAILVYQFNDIKEIEKMCNKIHKCLKKSF 242 Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705 ++ +EI ++ S+G + E+LK +Y +K +G N F + Sbjct: 243 KIMGKEIYISTSLGVTVFPDDSSDPDELLKFCNFTIYRSKGKGKNECTFFDKQKAQPYFR 302 Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 I + +L ++ N+EL + Y P I ++ +I+G+EAL++W++ K GN+ +EF+ IAE+ Sbjct: 303 KILIESELKNSIINNELDIFYQPQINALNNKIIGVEALLRWNNNKLGNVPPTEFIPIAED 362 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823 I I ++L + SW+++ I +N++ L ++ + + +K Sbjct: 363 NGYIVQIGNWVLNKALETACSWKEKGYKFN-TISVNVSPIQLKKSDFKSNILNICAKHNV 421 Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883 PS + + +E ++ E LL L + GIS+ +DDFGT S L+YL +P +T+K Sbjct: 422 EPSLLGIEITERTLIEIGEDRIELLNELMESGISIAIDDFGTGYSSLNYLINLPINTLKI 481 Query: 884 NGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942 + S + A++ SI+ ++K ++ +I + + + E+ +GC+ IQ + + Sbjct: 482 DKSFIPNIHNDKNKAVIGSIVKLSKYLKYKVITEGVETREQLDEIVSLGCNLIQGYYFSK 541 Query: 943 PLGFNSILKLLKER 956 PL N I LLK + Sbjct: 542 PLKENKIEDLLKNQ 555 >gi|91778946|ref|YP_554154.1| RNase II stability modulator [Burkholderia xenovorans LB400] gi|91691606|gb|ABE34804.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400] Length = 667 Score = 465 bits (1198), Expect = e-128, Method: Composition-based stats. Identities = 129/542 (23%), Positives = 246/542 (45%), Gaps = 11/542 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + G+ ++ G W ++ D + F R + Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIIGRN-VWALFMSTEDGAASSQNIAGFF-NRGVSYEV 186 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E R++ + ++ S S + I DITE++ + E + A D+LTG+ Sbjct: 187 ERRIKTVHGERLFLFRNKFVHSGSGVEEQFLICSGTDITEERLAQERLTELANTDSLTGL 246 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 NR + DR+ ++ + V+ +D+D +KK+ND G GD ++ ++ I Sbjct: 247 ANRNAIQDRIRAAIEDA--TPGEAVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSSAISL 304 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D LARL G+ F I+L + + ++ A + + + P +L E+ SIG A Sbjct: 305 CLNEGDTLARLGGDEF-IVLAARGTAHELEVTAQRILERMRTPFSLGLVEVYTGCSIGIA 363 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 + + ++++A+ AMY AK G F R + + + +L ++ + Sbjct: 364 RYPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGLDEGQ 423 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L L Y P + L + G EAL++W+ P+ G I ++F+ AEE +I + +++E Sbjct: 424 LTLHYQPKLSLATGVVQGAEALVRWNSPERGQIMPTKFIRYAEESGLIGVLGRWVMET-- 481 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + + +A+ + I IN++++ L+D + + P I L +ES ++ Sbjct: 482 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFSEALQHANLDPCLIDLELTESCLIE 541 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIA 897 + + L+ + R++G + LDDFGT S LS LG IP D +K + S + + K A Sbjct: 542 DETAAIDLIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADPKAQA 601 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++RS++ +A+ + ++A+ I E + + +G DY+Q + + L++R Sbjct: 602 LVRSMVVVAQELNFKVVAEGIETESEELFMRGLGVDYVQGFLYGQAMPAAEFERWLQDRQ 661 Query: 958 PL 959 L Sbjct: 662 KL 663 >gi|289208761|ref|YP_003460827.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] gi|288944392|gb|ADC72091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thioalkalivibrio sp. K90mix] Length = 842 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 144/582 (24%), Positives = 268/582 (46%), Gaps = 12/582 (2%) Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIA 435 +I +++G + ++ + +R + +++ + + + + + A Sbjct: 262 VIALVLGLMAVWLRRTVRAQTRALREANQRLEHLLESGPVVLYQLNALDFKPLWVSGNFA 321 Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495 + G S W +H DR R + E R+ + + Sbjct: 322 RLFGFNSRVAL-QPGWWEQQVHPEDRATAMRENRRLQEER--HMVRELRLFDGWGKLRHI 378 Query: 496 IIRIRPMSNSNGDILR--YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 +R + N +G D+T + E + A D TG+PNR DRL Sbjct: 379 RDEMRIIPGGNQGQRGAEVVGSWTDLTASMEQKEALRQMAHYDARTGLPNRVLLHDRLGH 438 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 L+ + D R V+ ID+D+++ +N+ LG + GD VL L R+G LL D ++R+ Sbjct: 439 TLERAMADGLARWVVL-IDLDRFRNVNETLGTSAGDRVLEGLAERLGGLLGPQDTVSRVG 497 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 + F +I+ + F + +++ P + R + TAS+G A++ T E+ Sbjct: 498 ADEFCLIIENPPMDGGAEAFLEQLLETLREPCAIGGRALVTTASVGLATFPEHGNTRDEL 557 Query: 674 LKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 L AELAM ++ GG+ + R+ ++ DL A+ N EL L + P + + Sbjct: 558 LTAAELAMAASRSVGGDTWHVYEPGMGAQTEHRLFLENDLRSAIANDELLLYFQPQLEMQ 617 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 +VG+EAL++W HP G +S +EF+ +AEE MI+AI+ ++L + W Sbjct: 618 SGRLVGMEALVRWRHPVRGMVSPAEFIPLAEETGMIQAIDRWVLNAACAQLAHWDQDGRG 677 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 P + +N+++++L D L +Q ++ P R++L +E+++M PER+ +L RL Sbjct: 678 VP-TVAVNLSARELHDETLVAAIQEILEHHGLEPDRLELELTETMMMEQPERALAVLHRL 736 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909 +G++L +DDFG S L++L +P +K + SL+ +I+R+II +A + Sbjct: 737 ETLGVTLAMDDFGAGYSNLAHLRRLPLRRLKIDQSLVRDIGHSRNNESIIRAIIALADAL 796 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 +IA+ + L R GC + Q + P ++ L+ Sbjct: 797 GLDLIAEGVEEAGQQAFLLREGCRFGQGYLLGRPAPADNALQ 838 >gi|209543353|ref|YP_002275582.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Gluconacetobacter diazotrophicus PAl 5] gi|209531030|gb|ACI50967.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Gluconacetobacter diazotrophicus PAl 5] Length = 698 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 134/583 (22%), Positives = 246/583 (42%), Gaps = 34/583 (5%) Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-----------WDIVRDRVTTTPDIAT 436 + + Q + + Q+ + GS D + D + + A Sbjct: 129 KRARSPVQLEQELENSRAAQAEILRGSRDRLLQVIDTVPALVSATDAEGNYIFVNRFHAR 188 Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496 ++G +G + L DR + +YE + ++ Sbjct: 189 VMG--AGQGRNDAASQLR-----DR--------QVLETGLPTARYEESIADRYGMERILL 233 Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556 P + + + + DIT++KK+ + A+ D LTG+P+R + +L Sbjct: 234 TSKIPFYDDASGMRYVLTTSLDITDRKKAERELHHLAYYDQLTGLPSRSKLETEMQVLLR 293 Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616 D +++D+D++K IND G +GD +L + R+ L I+ARL G+ Sbjct: 294 QRGAD-GPPFAFVLMDLDRFKGINDTQGHTIGDLLLRKVALRLRTALPRAGIIARLGGDE 352 Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676 F I+ ++ A A + A P L +R +V AS G + + T +LK Sbjct: 353 FA-IVHDVIDAADAAHMAERIVGIFARPFTLGDRVTSVGASAGVTLFPARGATFETLLKR 411 Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734 A+LAMY AK+ G F ++ +++ L AVEN E L Y P I L Sbjct: 412 ADLAMYRAKNEGRCRYAFFDEEMEQAFAATTELEQALRRAVENEEFVLHYQPQIDLASGT 471 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 + G+EALI+W P + F+ +AEE +I + ++ L R W+ I Sbjct: 472 LCGVEALIRWVQPGGDLVHPGCFLPLAEETGLIAPMTVWSLREACRQAARWQSDGIH--I 529 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 + +N++ +++ + ++ PS ++L +E+ V+ NPE + L L+++ Sbjct: 530 RVAVNLSGVLFRQHDVHRLVVDATTEAGLDPSFLELELTETAVIENPESAGRQLAALQQM 589 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G+S+ +DDFGT + L YL +P +K + + + AI+++II + KN+ Sbjct: 590 GVSVAIDDFGTGYASLVYLTRLPIHRLKIDRVFIQDLGSSPGSRAIVKAIIALGKNLGIR 649 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 +IA+ I + ++ L C Q + P+ + L+ Sbjct: 650 VIAEGIERQDQLRWLEEQDCQEAQGFYFGYPVPPAKLQDLVDS 692 >gi|66047720|ref|YP_237561.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63258427|gb|AAY39523.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 972 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 121/440 (27%), Positives = 233/440 (52%), Gaps = 7/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + + A D+LT +PNR + L I+ + + +V+ ID+D++K +N Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSAPDA-VSVIFIDLDRFKAVN 579 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ S + I A + + Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIGENSVVARLGGDEFSIVVTHSVYSESLIKSLATHVVE 639 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL ++I V+AS+G A++ + +LKNA+ AMY AK G N+ + + Sbjct: 640 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYQAKKSGRNNFKFYNARM 699 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A+E E L + P + L D I GLEAL++W+HP+ G +S ++F Sbjct: 700 NESLTRRLQTETLLRGALERDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPADF 759 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + ++++ ++ + W + + I IN++ + L L E ++ + Sbjct: 760 IPILEDTGLIIPVGVWVIRKVCETLKRWEENHIRL-VPIAINLSVRQLQVKGLAETVKHI 818 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 819 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + ++ L GCD + Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQM 938 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + P+ + ++K Sbjct: 939 QGYLFSKPVISDECAAMIKS 958 Score = 54.2 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 89/286 (31%), Gaps = 20/286 (6%) Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + +SF + A + + + + + + +I + G+ L L Sbjct: 139 GVMRLSFNAERIAAELYSLVIQATLFAGFFLLISLMLMGFMIKRSLAHLGKLHSYEAEIA 198 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 A+ ++ + + + T G + + + + A+ Sbjct: 199 SGAVA---AEAMLVADAPMEIQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEV 255 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS--FV 472 IV + T + + + I++ + + Sbjct: 256 S-IVCEVSASGRITYVNERFVTSSQHSRAELLE--------LTIDEVWTGMSSANEPWLW 306 Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 E R+ + W + P+ + G + +YI I DIT++K+ IL N Sbjct: 307 APENKVWNGEVRLSGRTGKEAWHQRTVIPILDDLGGVEKYICIDIDITDRKEFEVAILDN 366 Query: 533 AFQDNLTGIPNRQSFLDR----L--TTILDLSATDDNLRPTVMVID 572 + + NL + +Q+ + L L + + ++V+D Sbjct: 367 SRRQNLIALFGQQALTEENVSVLGERAALTAAQGLKLSKAALLVVD 412 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] gi|151281539|gb|ABR89949.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Janthinobacterium sp. Marseille] Length = 709 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 119/433 (27%), Positives = 223/433 (51%), Gaps = 7/433 (1%) Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + + A QDNLT +PNR DRL ++ + + + R +M ID+D +K IND LG Sbjct: 255 ANQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQS-RFALMFIDLDGFKAINDSLG 313 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 +GD +L+ + +RI + ++ D ARL G+ F +++ N A A + ++ P Sbjct: 314 HHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLIE-VNEPEDAASVADKLCTTLNQP 372 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702 ++ + + ++ASIG A + T ++L +A+ AMYH K G N F ++ Sbjct: 373 FDIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASMNINAH 432 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 +++ + +DL A+E E L Y P D +VG EAL++W HP G ++ ++F+ +AE Sbjct: 433 NQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFISLAE 492 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + +I I ++L+ R + W D+ I +N++S ++ L E ++ +++ Sbjct: 493 KTGLIVPIGEWVLDEACRQMRKWYDE-GYQQWKIAVNLSSVQFSNDNLVEMVKETLARNN 551 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + + L +ES M N E S +L +L +G+ +++DDFGT S L YL +P +K Sbjct: 552 LPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPATELK 611 Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + +I+ +I+ + +++ I+A+ + E + LT +GCD +Q + Sbjct: 612 IDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQGYFM 671 Query: 941 ASPLGFNSILKLL 953 P+ + + Sbjct: 672 GHPMASEQFMAAI 684 >gi|74317024|ref|YP_314764.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gi|74056519|gb|AAZ96959.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [Thiobacillus denitrificans ATCC 25259] Length = 730 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 129/439 (29%), Positives = 234/439 (53%), Gaps = 6/439 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E++ + + I AF D+LTG+PNR SFL+ ++ +D S N ++ +D+D++K +N Sbjct: 279 ERQDNEQRIRHQAFHDSLTGLPNRNSFLEHISEAIDRSKRSGN-PGALLFLDLDRFKLVN 337 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG GD +L RI + L+ D+ R+SG+ F +IL S + A A + + Sbjct: 338 DSLGHDAGDQLLRITASRIQKCLRETDMAFRMSGDEFVVILESVDKGEHAALAAQRVMQE 397 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 +A+P++L E+ V SIG ++ +LK A+ AMY AK G NH E Sbjct: 398 MAVPMSLSGCEVIVNVSIGITTFAGDSADVQALLKEADSAMYRAKQVGQNHYEFHTPDMN 457 Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 +R+ ++ DL A++N E L Y P I + IV +EAL++W+HP G + + F+ Sbjct: 458 SAAHERLSMETDLQRALQNQEFVLHYQPKIDTATKAIVSVEALLRWNHPTRGLVLPNTFI 517 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 + E+ +I + ++L + A +W D PI + +NI++K + L E ++ + Sbjct: 518 PLLEDTGLINPVGEWVLLQAACQAQAWIDAGL-EPIRMSVNISAKQFRSHILVETVRRTL 576 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + ++L +ES+ + N ERS ++ L+ +G+SL++DDFG+ S L+YL P Sbjct: 577 GASQLESRYLELELTESMFIENAERSIQIMQELKCLGVSLSIDDFGSGYSSLAYLKQFPV 636 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + S +T +K AI +I +A +++ ++A+ + + ++ L + GC +Q Sbjct: 637 DYLKIDRSFVTDLVSNKKDAAIAVAIAALAHSLDLKLVAEGVEDQAQVEFLEKQGCHELQ 696 Query: 937 DSHVASPLGFNSILKLLKE 955 P+ + ++L++ Sbjct: 697 GYLFGRPVSAEELEQVLRQ 715 >gi|83749334|ref|ZP_00946331.1| Hypothetical Protein RRSL_01002 [Ralstonia solanacearum UW551] gi|83724012|gb|EAP71193.1| Hypothetical Protein RRSL_01002 [Ralstonia solanacearum UW551] Length = 732 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 114/436 (26%), Positives = 210/436 (48%), Gaps = 7/436 (1%) Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579 T K+ + + A D+LT + NR DRL + + + +M +D+D +K + Sbjct: 281 TSLAKANKELAYLALHDSLTKLSNRLLLEDRLEQAIRSAGRNRG-SFALMFLDLDGFKAV 339 Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639 NDV G GD +L + RRI ++ D +AR+ G+ F +L S A A+ Sbjct: 340 NDVYGHHAGDLLLADVARRIVACVRLQDTVARVGGDEFV-VLASVGEPADAGTLADALLA 398 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 + P + + V+ SIG A + + ++L NA+ AMYHAK G + F S Sbjct: 399 AAREPFLVDGHALRVSTSIGIALYPGDGASQHDLLTNADAAMYHAKGTGRDTYCFFEASM 458 Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 ++ + +DL A+E EL L Y P D +VG+EAL++W HP G + F Sbjct: 459 NANVHKQLQLVQDLRQALERRELVLHYQPKFSAPDGPVVGVEALVRWQHPSRGLVPPDAF 518 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AE+ +I + ++L+ R + WR + I +N+++ L + ++ Sbjct: 519 IPLAEKTGLIVPLGAWVLDEACRQMAQWRRE-GRTSWSIAVNLSAVQFAHAALVDTVRDT 577 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +++ P + L +ES M + + S +L +L +G+ +++DDFGT S L YL +P Sbjct: 578 LARHALEPPCLTLEITESTAMRDADASLRILQQLHAMGVRISIDDFGTGYSSLLYLKRLP 637 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + + + AI+ +++ + + + I+A+ + E LTR+GC + Sbjct: 638 ASELKIDRGFVRDLAHDTEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTRLGCHAL 697 Query: 936 QDSHVASPLGFNSILK 951 Q + + P+ ++ + Sbjct: 698 QGNLLGRPMTAQALAE 713 >gi|284990037|ref|YP_003408591.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus DSM 43160] gi|284063282|gb|ADB74220.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geodermatophilus obscurus DSM 43160] Length = 641 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 131/532 (24%), Positives = 240/532 (45%), Gaps = 17/532 (3%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D+ + + + G M G + L H D D + R+ Sbjct: 53 DLDGHLLVVNDALCVMTGRTPEDMVGRHVDLLA--HP-DEAPVPDRADGPLDPWL-RVDG 108 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E R+R AD W + S G + D T+++++ E ++ AF D LTG+ Sbjct: 109 ERRLRRADGTELWATQSHEVIHTSTGTPQFVVLSLIDGTDRRRAEEDLVRRAFTDPLTGL 168 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 PNR++ DRL L LS L+ ++ +++D+++ +NDVLG GD +L+ + R+ Sbjct: 169 PNRRALNDRLNHALALSRRR-GLQVGLVHLNLDRFQAVNDVLGNEAGDQLLIQVADRLRW 227 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 + D RL G+ F I+ + + A + + P + +REI ++AS+G Sbjct: 228 STRVEDTAVRLGGDEFLILAEDVEDLDGLRTMADRLLGVLDDPFLIGKREIVLSASVGLT 287 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDRVMIKEDLCLAVENS 718 S + ++L+ A A+ AK G V +S D++ ++ DL A+E+ Sbjct: 288 L--GSDVAPDDLLRQAHAALTRAKADGSRARIEVHDGGLSDSEVDQLQLEADLRNALESD 345 Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778 EL L Y PI+ L DE ++G EALI+W HP G + F+ AE+ + + ++L + Sbjct: 346 ELRLFYQPIVSLHDETLLGYEALIRWQHPTRGLLPPGAFLTAAEDNRLTSRLGAWVLRQA 405 Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838 D W + + +NI+++ L + E + ++++ P R++L +ES + Sbjct: 406 CFDAAGWPA-----GLRVHVNISARHLAEPGFAELVTDALAESGLPPERLELEITESTAL 460 Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896 + + + + G++L LDDFGT S ++ L +P TVK + S + + Sbjct: 461 FAADATLHAVSEVTDAGVTLALDDFGTGYSAITALHRLPIHTVKIDRSFVADVVTEPSTA 520 Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948 A+++ ++ + + +IA+ I L GC+ Q P + Sbjct: 521 ALVQGLVQLGLGMGLQVIAEGIEDLDQADWLREHGCEMAQGYAFGRPAPLPA 572 >gi|295401312|ref|ZP_06811284.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] gi|312111870|ref|YP_003990186.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] gi|294976719|gb|EFG52325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus thermoglucosidasius C56-YS93] gi|311216971|gb|ADP75575.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacillus sp. Y4.1MC1] Length = 802 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 123/578 (21%), Positives = 259/578 (44%), Gaps = 33/578 (5%) Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439 + G ++++ + + + E + D + P Sbjct: 243 AVAGLSILRDMTDFIQVREQLQQSEELYRKVIEFLPDPII-IQADGVIHYMNPA------ 295 Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499 L + D + S +R + + E+ + + + + ++ Sbjct: 296 ------------GLEMVKAERIDFVKGKRLSDFLEKREQQENEWVLTSLCGEQKEVDVKA 343 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 + + G +++ I D++EQK + I A D +T +PNR ++L +L Sbjct: 344 MSI-DYYGQSAQFL-IIRDLSEQKSKEKKIEFMAQYDPITVLPNRNYLREKLNELLLR-- 399 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 ++ V+++D+++++ IND LG + GD++L + RR+ ++ L+R+ + F + Sbjct: 400 ---DVSIAVLLVDVNRFQFINDFLGHSNGDELLKEVARRLKKIQSEQVFLSRIGDDEFAV 456 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 + ++ + + + P + ++ VT +IG + + + +L NA Sbjct: 457 VYTYNK-KEEVNWLLKKLDRLLNEPYFIAGEKLNVTINIGVSYAHDADRSVETLLSNAGK 515 Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737 A+Y+AK G + V ++ R+ ++ DL A+EN+E L Y P + + + Sbjct: 516 AVYYAKTNGVHRVVQYQSKLHDIFVKRIRLENDLQTALENNEFSLYYQPKVNVQSGTV-S 574 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 +EALI+W HP+ G +S +EF+ IAEE MI+ I ++L++ D+ + + + Sbjct: 575 VEALIRWKHPQLGMVSPAEFIPIAEETNMIERIGKWVLQQSCDDLKTLHKS-GFSALKMA 633 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++++ +D+ L + +++ PS +E+ +M P +L L++ GI Sbjct: 634 VNLSARQFMDSSLKATVSNILTSADVPPSSFVFEITETTIMKEPNEVIRILQALKEQGIM 693 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915 + +DDFG S L+YL P D VK + S + E R I+ +II +A + ++ A Sbjct: 694 IAIDDFGVSYSSLNYLNRFPIDAVKIDRSFIRDFHENRKGAEIVEAIISLAHRLNLSVTA 753 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + + E ++ L GCD +Q + + P+ + +L Sbjct: 754 EGVETEEQVRFLLEKGCDEMQGYYFSRPVPLEQLPNVL 791 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 55/174 (31%), Gaps = 9/174 (5%) Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 R+ +I P + ++ I +A + I + + + D + Sbjct: 100 EWRIAESMIVPVFTKDGTMPYMVCFTRDITEQIAREKQFEEI---HQLFHSFLEQTHDAI 156 Query: 419 WDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477 +D+ + + +LG + + I ++L + L + Sbjct: 157 VMFDLAGRVLRVNREAERLLGWSEKEVLAKKIADFL----PGHHGKLQQSLQKLSRGQTL 212 Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531 + D + + + P+ ++G + + I D+T+ + E + Sbjct: 213 T-SVHLSLVRKDGKKVHVSANVTPVFGNDGTAVAGLSILRDMTDFIQVREQLQQ 265 >gi|90420618|ref|ZP_01228525.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas manganoxydans SI85-9A1] gi|90335346|gb|EAS49099.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas manganoxydans SI85-9A1] Length = 808 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 153/810 (18%), Positives = 315/810 (38%), Gaps = 57/810 (7%) Query: 179 NFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238 + V + + + + +++R+S + W+ + G Sbjct: 2 AAFAQNVLVDHSLGFVATALVVCAIMAAIVLTVLDRASSVEGGRRYTWMAVSAAVAGLGV 61 Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW-----HAKVGYITFSGIACI 293 + G + ++ + +++ H++ + IA + Sbjct: 62 WTTHFVAMLGFRPDVVLGYDPMVTIVSVFVGILFVGLPLAATVLVHSRAARMALGAIAGL 121 Query: 294 A----------ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343 L Y + I+ A + ++++ Sbjct: 122 GVGAMHFTGMSALQGCLAAYDPLVTLISLFAGAGFFAAAMSMPPRGKQRLAVATLMVLGV 181 Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY-----FSQ 398 L FI GL ++ + I++P + V + L+ F + G Sbjct: 182 CFLHFIAIAGLTLSAAPAAEVWIVEPVTLSAFVALAALMIFITAFILAVNGEKLDASSRA 241 Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWL 453 E + A+ + + +LG+ + + ++L Sbjct: 242 AAADAAEHLRVLSAALQNMSNGLVMVGPDGIITLHNERAYELLGIGPNELRSGLALSSFL 301 Query: 454 PYI-HIN--DRDNFRTILDSF--VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508 H D ++D+ R + E + AD + + PM++ Sbjct: 302 DNFGHKAGWDAARIDRVIDNHTVWMRRSTITRVEHHL--ADGRVIGVACC--PMADG--- 354 Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568 I +D+TE ++ I A+ D LTG+PNR+SF D L D + T+ Sbjct: 355 --GAILTYDDMTEARQVQATITHMAYHDALTGLPNRRSFQDELKARFDSAK-----PTTI 407 Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628 ++ID+D++K +ND LG VGD +L+ + R+ D++ RL G+ I+ + +S Sbjct: 408 VMIDLDRFKAVNDTLGHPVGDALLIQVADRLRACCNPNDLIFRLGGDELAILPGDDEHSD 467 Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688 A + + P + I++ S+G A+ + + A+LA+Y AK G Sbjct: 468 ---TLARRVVEGFERPFTADKHRISIGCSVGLATADDVDDPDLVV-RQADLALYKAKKNG 523 Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746 N +E + + R ++ D+ A++ + L Y P+ L E+VG EALI+W+H Sbjct: 524 RNRIERYESGMMEDAVKRRDLEMDMVRALKEGQFSLNYQPLFNLPTRELVGFEALIRWNH 583 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806 P G + EF+ +AEE +I I ++L R+ W + +++ +N++ L Sbjct: 584 PTLGLVPPVEFIPLAEETGLITEIGEWVLNEACREASHWPGE-----LYVSVNVSPVQLH 638 Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866 ++ + +++ + R++L +E+ ++ + R L LR +G+ + +DDFGT Sbjct: 639 KTDMLRQVTRALAEHGLTAQRLELELTETAMVDDGRRINATLTALRSLGVRIAMDDFGTG 698 Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924 S L++L D +K + S + + + +A+LR++ MAK++ + + E + Sbjct: 699 YSSLAHLREFDLDRIKIDRSFIDSAPDDVSSLAVLRAVTMMAKDLSIATTGEGVESEEQL 758 Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954 L +GC Q + P+ + L++ Sbjct: 759 ARLLDLGCGTAQGYLLGRPMTAEAARALMQ 788 >gi|39935221|ref|NP_947497.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris CGA009] gi|39649072|emb|CAE27593.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain [Rhodopseudomonas palustris CGA009] Length = 709 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 144/672 (21%), Positives = 284/672 (42%), Gaps = 41/672 (6%) Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMK------GYERAVLLIPAWILIFIWFIGLWM 356 + ITLA+++ Y G++ G R +I + Sbjct: 42 SAPDAHTWGMITLAAVLCALGVVAAYGGLRSIRVSEGKGRRHWIIATCFASLSAVAAVVA 101 Query: 357 AITKRLDNDIIQPALVGGLVL--IVILIGFTVIQHVLATGYFSQGIFSDGER---QSLAV 411 + + P + L++ ++ GF + L++ + + ER + Sbjct: 102 LALLAASDAPLAPTIALVLMIGSVIATTGFASLAVWLSSIAGRRTQLTLAERDMVLDAIL 161 Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLAS--GSMHGPIRNWLPYIH-----INDRDNF 464 + +D V I G+ +R L + ++D+ Sbjct: 162 NDAARGFCLFDAVGRLQLWNEAFLDIYGIPPGREIAGHSLRRTLAVMQNSGNFVSDKRQL 221 Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524 + + L E R D + + +R NG +I +D+T+ K+ Sbjct: 222 IELGAALASGGPASLVAELR----DGRHIRIDLR----RLPNG---GWIAKHSDVTDHKQ 270 Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + A D TG+PNR +F DR+ ++ + D V+ + ID++K+INDV G Sbjct: 271 AEQRFAYLALHDVATGLPNRAAFNDRIVQSVEQARRFDG-SFAVIRLGIDRFKEINDVFG 329 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 AVGD VL + RR+ + + LAR G+ F I+ + + I D + + Sbjct: 330 QAVGDAVLAEMARRLADTCHWG-FLARPGGDEFSIVTPPDAAADSIQDVCRQLTELCDTE 388 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRS 702 + + V A+ G + + + ++ +A++A+Y AK RG + + Sbjct: 389 FEVDGHRVRVGATAGVSVYPRDGDDADTLIAHADVALYRAKTEQRGTVCLFEPAMDLQIR 448 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ ++ +L +A+E + + Y P EIVG EAL++W HP G +S + F+ +AE Sbjct: 449 EKRALQRELAVALEQRQFEIHYQPQAS-TSGEIVGFEALLRWRHPVRGMVSPALFVPLAE 507 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E I I+ ++L + + SW P+ I +N + D ++ + ++ +T Sbjct: 508 ETGQIGPIDEWVLRSVCAEAASWAK-----PLAIAVNFSPLDFRRFDVPALILQILLETG 562 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 SR+++ +E V++ + + +L +++ +G+ + +DDFG S LSYL PFD +K Sbjct: 563 LEASRLEIEITEGVLIDDFAGAIAILRKIKNLGVRVAMDDFGAGYSSLSYLQSFPFDKIK 622 Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + + + AI+ +I+ +A+ ++ +IA+ + E + L + GCD +Q + Sbjct: 623 IDQAFTRKLETNPESAAIVEAILSLARTLKLPVIAEGVETEKQLAFLAQAGCDEVQGYLI 682 Query: 941 ASPLGFNSILKL 952 P L Sbjct: 683 GRPQPIAHYRDL 694 >gi|288554460|ref|YP_003426395.1| putative signaling protein [Bacillus pseudofirmus OF4] gi|288545620|gb|ADC49503.1| probable signaling protein [Bacillus pseudofirmus OF4] Length = 634 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 116/432 (26%), Positives = 211/432 (48%), Gaps = 8/432 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + I A+ D LTG+PNR + L ++ + + N T++ +D+D++K +ND+L Sbjct: 194 QARKRIEHQAYHDALTGLPNRYHIEEYLKRSIEYAKVN-NSSLTLLYLDLDRFKLVNDLL 252 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G VGD +L + ++ + + ++ R G+ F I+L N ++ A + ++ Sbjct: 253 GHQVGDLLLKEVAEKLSQTICENGMIGRQGGDEFLIVLEDMN-EEEVRAIAGRILDCLSY 311 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 P +E ++ SIG + + M+KNA+ AMY AK RG N+ + + Sbjct: 312 PFVYAGKEFFISPSIGISMFPKDGNDIESMMKNADTAMYMAKERGKNNFQFYSSEPSSLL 371 Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 ++ L A++N E L Y P + L E+ G EALI+W++P+ G IS EF+ IA Sbjct: 372 SRRHLLENKLRTALKNKEFILNYQPQVHLNSHELRGFEALIRWNNPELGLISPEEFIPIA 431 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I I ++L+ R +W++Q + + IN++S+ D E + ++ ++ Sbjct: 432 EETGIITDIGTWVLKEACRQNKAWQEQ-GFVRVPVSINVSSQQFRDPEFVWNVLNVLKES 490 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P +++ +ES + + L +++ GI + +DDFGT S LS L +P D + Sbjct: 491 KLHPQYLEIELTESTT-HHFVHTVEKLQLIKQYGIKVAIDDFGTGYSSLSALDQLPIDIL 549 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + S + + AI ++II + N++ IIA+ I L C Q Sbjct: 550 KIDRSFIKHILTNPNKAAIAKTIIDLGHNLDFKIIAEGIEEPSQADFLNEHQCHIGQGFL 609 Query: 940 VASPLGFNSILK 951 PL + + Sbjct: 610 FHPPLNPTDVAR 621 Score = 70.4 bits (171), Expect = 2e-09, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 9/142 (6%) Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468 A+ + I+ D I + G L H +D F + Sbjct: 19 ALNEAS-IIAITDNKGTITFVNDMFCKISKYDRDELLGQNHRMLKSSYHSSD--FFVHLW 75 Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + + + E + +A D F+W+ I P +S G +Y+ I DITE+K + E Sbjct: 76 RTISRGK--VWRGEVKNKAKDGSFYWVHTTIVPFLDSRGKPYQYVSIRTDITERKCTEEL 133 Query: 529 ILCNAFQDNLTGIPNRQSFLDR 550 + D L NR+ Sbjct: 134 LKR--SLDQLAN-SNRKLLDHH 152 >gi|307946815|ref|ZP_07662150.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Roseibium sp. TrichSKD4] gi|307770479|gb|EFO29705.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor [Roseibium sp. TrichSKD4] Length = 777 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 115/449 (25%), Positives = 232/449 (51%), Gaps = 8/449 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ ++ +L A D LT +PNR F ++L ++L + N + ++ +D+D++K +N Sbjct: 329 EKMRADREVLHLAHHDMLTALPNRLKFKEKLDSLLVRC-RNKNEQLALVFVDLDQFKVVN 387 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRK 639 D G ++GD+VL + +R+ L D + R G+ F I++ +E+ N + F + +RK Sbjct: 388 DSFGHSIGDEVLKIIAKRLKTLSSKTDSVFRFGGDEFVILVENESVNKDALVPFLVDLRK 447 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 S++ I + R VTAS+G A + + ++ A+ AMY AK G + + + S Sbjct: 448 SLSEAILVHGRTFHVTASLGVACFPDDGTDAETLVGRADSAMYKAKDAGRDVFKFYIPSM 507 Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + R+ + E++ + +E E LVY P + ++D +++G EAL++W+HP G + F Sbjct: 508 SQGLAQRLTLLEEMRVGLETGEFRLVYQPQLDIVDGQMIGAEALVRWEHPYLGTLLPGRF 567 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + + E+ +I + ++L + RD +W + + + +N++++ D++ + Sbjct: 568 IPLMEDTDLICQLGDWVLSQACRDAKNWNE-LSDDDRPVGVNVSARQFSDDDFVCRVNKA 626 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 +S++ P ++L +ES++ N +++ ++ LR +G+ L +DDFGT S LS L P Sbjct: 627 LSESGLRPDLLELEITESLLFRNKDQAAEVMSELRDLGVQLAIDDFGTGYSSLSRLRSFP 686 Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 +K + S ++ + I ++II + ++ +IA+ + K L MGC Sbjct: 687 LTRLKIDKSFISDLDRESGDQCIAQAIISLGNDLGLRVIAEGVETVAQQKILMEMGCREA 746 Query: 936 QDSHVASPLGFNSI-LKLLKERFPLVKNT 963 Q H P+ + + L + P + + Sbjct: 747 QGFHFGRPMKLSDLKANYLPKSMPPLATS 775 Score = 58.4 bits (140), Expect = 6e-06, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 7/121 (5%) Query: 411 VLGSGDIVWDW----DIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFR 465 + D + D+ D V IA G + + G + D F Sbjct: 50 LQSIADDIADYIYLKDSNSRFVFANAIIARDFGYSSPAELFGKTDH--DVFSNEVADGFL 107 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + ++ YE V+ + + W+ P+ G I+ +G+A DITE+KK Sbjct: 108 NDEREILSTGEAKVDYEEFVKYENGIYRWLSTSKFPLKTPEGKIVGILGLARDITERKKL 167 Query: 526 L 526 Sbjct: 168 E 168 >gi|118589781|ref|ZP_01547186.1| hypothetical protein SIAM614_05055 [Stappia aggregata IAM 12614] gi|118437867|gb|EAV44503.1| hypothetical protein SIAM614_05055 [Stappia aggregata IAM 12614] Length = 692 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 142/585 (24%), Positives = 261/585 (44%), Gaps = 21/585 (3%) Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 +V+ I + + + + R + A++ + ++ + + + Sbjct: 120 VVMSGIRLNDGRMALLCEGRPHHEQQPETL-RSAEALMHTTVMISLFSEDGNPLYRNTAA 178 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494 AS + + + H D+ R ++ + E V D W Sbjct: 179 RA----ASTDLECTLWD-----HFIDKALARKVMGVLSEKATTKFVAE--VLTCDG-LRW 226 Query: 495 MIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553 I IR ++ G ++ D+TE ++ E A D LTG+ NR +RL Sbjct: 227 HEITIRRCHDAVTGKPA-FLLSEIDVTELHQTKERAQYLASHDALTGLSNRTYLKERLLQ 285 Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613 + + +D L T+ ++D+D +K +ND LG A GD +L + R+ EL DI+ARL Sbjct: 286 VRQTAQEND-LIATLYLVDLDDFKMVNDTLGHAAGDHLLQLVASRLKELAGNNDIVARLG 344 Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673 G+ F I +S S + F A+ ++ A P + + V SIG+ + E+ Sbjct: 345 GDEFLICHLSSPESPRPDWFGQALLQAFATPQMIEGKPRHVGLSIGYVHYPMDGSDIDEL 404 Query: 674 LKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731 +++A+LA+Y AK + + R + +K+DL A+ +E L Y PI Sbjct: 405 MRHADLALYQAKSERKNKCVRYKEFMRKIRDKHLSLKKDLERAIRANEFLLYYQPIACTR 464 Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791 + IVG EAL++W HP+ G +S +F+ +AEE +I I ++ +A + Sbjct: 465 SQRIVGAEALLRWQHPERGLVSPDDFVPVAEETGLINEIGTWVSRNVADMQSRL--KLLD 522 Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851 + + +N++ K L D + M+ L +T + + I L +ESV++G+ + L +L Sbjct: 523 VSVPLSMNVSPKQLSDPKFLSRMENLPKETACNANEISLEITESVLLGDIPHAYETLMKL 582 Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911 + G + +DDFGT S L+YL P D +K + M AI+R I+ +A ++ Sbjct: 583 KAAGYRIVIDDFGTGYSNLAYLHNYPIDGIKIDRMFMNDIATGG-AIVRLILSLATALDA 641 Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956 T++A+ + L+ GC+ Q + P+ + +L+ + Sbjct: 642 TVVAEGVETVEQRSWLSENGCNRFQGFLYSKPVPEEQFVDMLQAQ 686 >gi|229114146|ref|ZP_04243567.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] gi|228669166|gb|EEL24587.1| Sensory box/GGDEF [Bacillus cereus Rock1-3] Length = 689 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 115/529 (21%), Positives = 240/529 (45%), Gaps = 16/529 (3%) Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487 P I G ++ +F+ I + R ++ + + Sbjct: 170 TYANPATYEIFGYRYEELNNNFIFNFII--KEYEKDFQIIFKEALQGRAKQIVSK-KYVH 226 Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547 + ++ +R P+ NG+I+ + D+T Q + A+ D LTG+ NR S Sbjct: 227 KEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNEMKTEYLAYYDQLTGLMNRISC 285 Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607 ++L L ++N ++ +D+D++ IND G GD VL +T + L Sbjct: 286 TNKLNEFL-----NENKELALVFMDLDEFHLINDTFGHKEGDKVLQKVTECLSNLEIEGM 340 Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667 L R ++F +++ + + + A + + I+ + E ++ ++ASIG + Sbjct: 341 HLFREHDDQFVMLIENIT-KEYVEEVAKNILEKISEHFVIEEEDVYLSASIGIVMAPTDG 399 Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYH 725 + + + A+ AK +G H + R R +++ L A+E +E +L Y Sbjct: 400 ADEKILFQRVDAALEKAKEKGKGHYHFYCKGLDCEREKRFVMENQLHRAIEKNEFFLYYQ 459 Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785 P + + ++I +EALI+W++ + G + ++F+ +AE I ++ ++++++ + I W Sbjct: 460 PQVNIETKKIASMEALIRWENKELGFVPPNQFIPLAERTGFIIKLDEWVVDQVCQQIREW 519 Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845 ++ + I +NI+++ L E + ++K + + +E ++ + + S+ Sbjct: 520 LNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVPAHLLAIEVTEGALI-HKDISK 577 Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903 +L +L++ + + LDDFGT S LSYL P DT+K + S M G E+ I +II Sbjct: 578 RVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIHVDERDTNITAAII 637 Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 +A +E +IA+ + I+ L + +Q + + PL + + Sbjct: 638 HLAHTLELNVIAEGVEKAEQIQFLKEKNVEIVQGYYYSRPLSKYDVENM 686 >gi|330969773|gb|EGH69839.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 972 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 121/440 (27%), Positives = 233/440 (52%), Gaps = 7/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + + A D+LT +PNR + L I+ + + +V+ ID+D++K +N Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSAPDA-VSVIFIDLDRFKAVN 579 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ S + I A + + Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIGENSVVARLGGDEFSIVVTHSVYSESLIKSLATHVVE 639 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL ++I V+AS+G A++ + +LKNA+ AMY AK G N+ + + Sbjct: 640 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYQAKKSGRNNFKFYNARM 699 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A+E E L + P + L D I GLEAL++W+HP+ G +S ++F Sbjct: 700 NESLTRRLQTETLLRGALERDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPADF 759 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + ++++ ++ + W + + I IN++ + L L E ++ + Sbjct: 760 IPILEDTGLIIPVGVWVIRKVCETLKRWEENHIRL-VPIAINLSVRQLQVKGLAETVKHI 818 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 819 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + ++ L GCD + Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQM 938 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + P+ + ++K Sbjct: 939 QGYLFSKPVISDECAAMIKS 958 Score = 53.8 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 26/289 (8%) Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + +SF + A + + + + + + +I + G+ L L Sbjct: 139 GVMRLSFNAERIAAELYSLVIQATLFAGFFLLISLMLMGFMIKRSLAHLGKLHSYEAEIA 198 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 A+ ++ + + + T G + + + + A+ Sbjct: 199 SGAVA---AEAMLVADAPMEIQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEV 255 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF--- 471 IV + T ++W + D T + S Sbjct: 256 S-IVCEVSASGRITYVNERFVT-----------SSQHWRAELLELTIDEVWTGMSSANEP 303 Query: 472 --VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 E R+ + W + P+ + G + +YI I DIT++K+ I Sbjct: 304 WLWAPENKVWNGEVRLSGRTGKEAWHQRTVIPILDDLGGVEKYICIDIDITDRKEFEVAI 363 Query: 530 LCNAFQDNLTGIPNRQSFLDR----L--TTILDLSATDDNLRPTVMVID 572 L N+ + NL + +Q+ + L L + + ++V+D Sbjct: 364 LDNSRRQNLIALFGQQALTEENVSVLGERAALTAAQGLKLSKAALLVVD 412 >gi|15596058|ref|NP_249552.1| hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1] gi|9946759|gb|AAG04250.1|AE004521_1 hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1] Length = 818 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 122/586 (20%), Positives = 240/586 (40%), Gaps = 15/586 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++++L Q ++ + ++ ER + + GD V D P Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490 + G P+ + + + R+ +++ + GR + +R D Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + P+ +I + + +D+T +++ + + A D LTG+ NR+ F R Sbjct: 333 SSVPVTLVGAPIHRGA-EITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L+ + R +M +D+D++K +ND G A GD++L + + + L+ D LA Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ FGI+L + + + + + T S+G T Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726 E L++A++A Y AK +G N V+ F R + + + LA+E L P Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570 Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 I+ L + + +E L++ + F+ AE ++ I+ +++E R ++ Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630 Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 PI IN++ + D + + L ++ P I +E+V + N Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + + L+ G +LDDF S YL ++P D +K +GS + A+++ Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I + + IA+ + ++ L +G DY Q + +PL F+ Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 796 >gi|86355809|ref|YP_467701.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] gi|86279911|gb|ABC88974.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42] Length = 795 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 139/747 (18%), Positives = 273/747 (36%), Gaps = 46/747 (6%) Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271 R + I A A+ + + L+ + + LS + + Sbjct: 43 AGRRKLWIGAAAFAFGTGVWATHFIAMLAYDGGM-PISYQLGLTALSFLLSVAGSWAAIV 101 Query: 272 YLHWNRWHAKVGYITFSGIACIAIL---FCMSFYYPMVTASIARITLASIVLYYTYFIIY 328 +R + I I + I + + + + Sbjct: 102 VASESR--GRFSRIRGGVIMALGIASMHLTGMQAIETQAVVVYNPYMTLSAVLAGALLSS 159 Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 Y +L L + + I G + +++ +++ Sbjct: 160 AAF--YAFFQWRGLGRLLTSSVTFVLAICALHFISMASITLVPDPGKEVRAMVLDTSLLA 217 Query: 389 HVLATGYFSQGI--------FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440 ++ + + S S + + + + G Sbjct: 218 AIVVVAATALILTVIAVVFIESHLTDLRGLANASQEGLLILR-EGRIIDANERFQVLSGW 276 Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500 + G + L G R E + + + + + Sbjct: 277 KLADLVGKAPS--------------AALTVIQGQNRP---GETLLTTSSGKEIAVDVNTS 319 Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560 + + + D+TE++ + E I A D LTG+PNR F R+ L ++ Sbjct: 320 RIVYRGHNCD--VLAVRDLTERRLAEEMIEHLAHHDVLTGLPNRSLFDTRIRQALQMAER 377 Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620 N + ID+D++K +ND+ G A GD +L + + + D +ARL G+ F II Sbjct: 378 -KNSEVALFYIDLDRFKSVNDIFGHAEGDRILCKVASILRRVADESDTIARLGGDEFAII 436 Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680 + A A+ A ++ V S+G A + + + E+ NA++A Sbjct: 437 QPAGQQPAAAQKLAAAILDEFAAEMDTARDPTAVGVSLGIALYPADGRETDEICNNADIA 496 Query: 681 MYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738 +Y KH G F R I+ +L A+ +++++ Y PI + E+ G Sbjct: 497 LYRVKHGGRGKACFFDAEMDEATRARRQIESELRHAITRNQIHVSYQPIYGALSGEVSGY 556 Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798 EAL++W+ P G F+ IAEE I + ++L + W P+ I + Sbjct: 557 EALMRWNRPGHGISEPDVFIPIAEESGSIVQLGEWVLRDACTEAARWP-----HPLTIAV 611 Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858 N++ + LCE ++A++ +T +P R+++ +E+ ++ + +R L RLR +G+ + Sbjct: 612 NVSPVQFMLPNLCERIEAILEETGLAPDRLEIEITEAALIRDRDRVMATLQRLRSLGVHI 671 Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916 +DDFGT S LS L PFD +K + S +I+R+II + ++ ++ + Sbjct: 672 VMDDFGTGFSSLSNLRTFPFDKIKVDRSFTGMLEHDAASRSIVRAIIGLGHSLGMPVVTE 731 Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASP 943 + E + + GC +Q + P Sbjct: 732 GVETETQRQIVVEEGCAQVQGFLLGKP 758 >gi|229591727|ref|YP_002873846.1| putative signaling-related membrane protein [Pseudomonas fluorescens SBW25] gi|229363593|emb|CAY50896.1| putative signalling-related membrane protein [Pseudomonas fluorescens SBW25] Length = 820 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 121/604 (20%), Positives = 237/604 (39%), Gaps = 21/604 (3%) Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---HVLATGYFSQGIFSDGERQSLAVLGS 414 I+ L+ L + LI +++ + F+ + + ER + + Sbjct: 195 ALGEGSRMILGLLLITNLATALGLIVLALLRTHKLLAQRHAFADALQQEKERAQITLESI 254 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH----INDRDNFRTILD 469 GD V D+ P + S G P+ + + I+ Sbjct: 255 GDGVITTDVDGAISYMNPAAEALTHWNSAQAQGLPLAALFNLLDDNAQPDGFTLIEHIVK 314 Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529 + + R+ D + + P+ S G + + + +D+T++++ + + Sbjct: 315 GQLSGGSEHSKTIQRL---DGSTVSVTLVGAPIR-SGGKVTGAVLVLHDMTQERQYIANL 370 Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589 A D LTG+ NR+ F RL +L +A R +M +D+D++K +ND G A GD Sbjct: 371 SWQATHDALTGLANRREFEFRLEQVLHPAAQQYGGRHALMFLDLDQFKLVNDTCGHAAGD 430 Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649 ++L + + L+ D LARL G+ FGI+L + ++ ++ Sbjct: 431 ELLRHICALLQSDLREGDTLARLGGDEFGILLENCPAAVAEKIAESLRHTVQSLHFVWKG 490 Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRV 705 R T SIG + T L+ A++A Y AK +G N V+ + R + Sbjct: 491 RPFMTTVSIGLVHLGHTPTTLETSLRAADMACYMAKEKGRNRVQVYHADDSELSLRFGEM 550 Query: 706 MIKEDLCLAVENSELYLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763 + L +A+E + L I D +E L++ I F+ AE Sbjct: 551 AWVQRLHMALEENRFCLYAQEISPLGQTDGGDGHIEILLRLHDEAGRIILPDSFIPAAER 610 Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTL 822 ++ +++ +++E + + I + P+ + IN++ + D++ ++ Sbjct: 611 YGLMTSLDRWVVENVFKIIARCLHERPGRPMAMCAINLSGITIGDDDFLGFLREKFHTYA 670 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P I +E+ + N + + L+ +G +LDDF S +YL ++P D +K Sbjct: 671 IPPGMICFEITETSAIANLGSAIRFINELKALGCQFSLDDFCAGMSSFAYLKHLPVDFLK 730 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 +GS + A++ I + + IA+ + + L +G DY Q + Sbjct: 731 IDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLI 790 Query: 941 ASPL 944 P Sbjct: 791 ERPQ 794 >gi|114321598|ref|YP_743281.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii MLHE-1] gi|114227992|gb|ABI57791.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii MLHE-1] Length = 802 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 118/448 (26%), Positives = 220/448 (49%), Gaps = 8/448 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + ++ + A D LT +PNR RL + + T R V+ +D+D++K IN Sbjct: 358 QLRQHQARLTHLANHDPLTDLPNRLLLTTRLEQAVARA-TGSGQRVAVLFLDLDRFKNIN 416 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG AVGDD+L L R+ + + +ARL G+ F ++L ++ + A + + Sbjct: 417 DSLGHAVGDDLLRILAERLRSQV-EANTVARLGGDEFIVLLDGISDLELVDQQARELLEL 475 Query: 641 IAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 +A ++ R + V SIG + + + +SE++ A+ AMY AK G N + S Sbjct: 476 VAESFSVGGWRSLQVGGSIGISLFPDNAQDASELITQADAAMYLAKAEGRNTYRYYNQSL 535 Query: 700 FRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 + ++ + L A+E L + Y P + + + G+EAL++W P+ G I F Sbjct: 536 TAAASERLETETRLRRALELDHLEVFYQPQLDITTGALTGVEALVRWRDPEQGLIPPDRF 595 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + +AEE +I + +LER + +W D+ +P + + +N+++ + D LC ++ Sbjct: 596 IPVAEETGLIDRLGQQVLERACLQVAAW-DRDGLPALDVAVNLSAHQIGDPRLCAKIRHA 654 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + ++ +P R+ L +ES +M E + L L+ +G+ + +DDFGT S L+YL Sbjct: 655 LERSGLAPRRLVLEITESTLMTQAEGALGTLAGLKGLGVQVAIDDFGTGYSSLAYLKRFA 714 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + ++I+ MA N+ ++A+ + + + LT +GCD Sbjct: 715 IDWLKVDRCFVQDLPEDRNDAELTQTIVYMAHNLGLRVLAEGVETQAQLDFLTHLGCDGW 774 Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963 Q + PL ++ L+ R L + Sbjct: 775 QGFLCSPPLPPQELVARLESREGLRRRA 802 >gi|87122911|ref|ZP_01078777.1| sensory box/GGDEF family protein [Marinomonas sp. MED121] gi|86161811|gb|EAQ63110.1| sensory box/GGDEF family protein [Marinomonas sp. MED121] Length = 806 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 125/563 (22%), Positives = 250/563 (44%), Gaps = 20/563 (3%) Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458 + + +GD ++ D+ ++G+ + L +H Sbjct: 238 ALERSDAHSKAIISQAGDAIFLSDMEGQITLVNKAAVKMVGIDEQELTHSN---LRSLHA 294 Query: 459 NDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517 + + + V L E R + + IR + + + + +A Sbjct: 295 E--ETWVSFYQDLVKQPLDTPLTIETLYRHSSGAVTPIE--IRLIKYVLQESIEVLILAR 350 Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577 DI+ +K++ + I A+ D+LT +PNR ++RL + +++S + ++ V+ +D+D++K Sbjct: 351 DISARKEAEDKINHLAYFDSLTHLPNRHWIMERLESSMEIS-RERKVKGAVLFLDLDRFK 409 Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIAD 632 IND LG VGD +L + L + +ARL G+ F + K+A Sbjct: 410 NINDSLGHDVGDLLLQVVANDFKVLAEGDICVARLGGDEFVFLFPFLEGDLDYINEKVAF 469 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 FA + +S + E+ ++ SIG + + +LK A+ A+Y AK G N Sbjct: 470 FAQQIVQSFNKSKFVGSHEMHISVSIGITLFDGFEENVGVLLKQADTALYKAKDAGRNTY 529 Query: 693 ESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750 ++ DR+ +++ L A+ ++E L Y P + E++G EALI+W G Sbjct: 530 RFYKAEMQVLTDDRLKLEKALHRAITHNEFELYYQPQNNVK-GELLGAEALIRWHDGDNG 588 Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIASKDLLDNE 809 I ++F+ +AEE+ +I + +++E + W + P + IN++ E Sbjct: 589 FIPPAQFIPLAEEIGLIIELGEWVMENAFYQLSQWLKRDLWKPDWTLSINVSPIQFQHPE 648 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869 ++ L+ K + I + +E++++ + + SRL + +R +G+ L++DDFGT S Sbjct: 649 FLINLERLLLKYNIPATLIDIEITENMLLTDLQASRLKMEHIRSLGMKLSIDDFGTGYSS 708 Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927 L YL +P + +K + S + AI+ ++I M+ ++ ++A+ + + + L Sbjct: 709 LQYLKTLPIERLKIDQSFVRDLLIDSGDEAIVGAVIAMSGALDIEVLAEGVETQEHLLRL 768 Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950 MGC Q P+ Sbjct: 769 EEMGCLNYQGYLFGRPVSATQFT 791 >gi|107100318|ref|ZP_01364236.1| hypothetical protein PaerPA_01001343 [Pseudomonas aeruginosa PACS2] gi|218893172|ref|YP_002442041.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58] gi|218773400|emb|CAW29212.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58] Length = 818 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 122/586 (20%), Positives = 240/586 (40%), Gaps = 15/586 (2%) Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433 ++++L Q ++ + ++ ER + + GD V D P Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273 Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490 + G P+ + + + R+ +++ + GR + +R D Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332 Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550 + + P+ +I + + +D+T +++ + + A D LTG+ NR+ F R Sbjct: 333 SSVPVTLVGAPIHRGA-EITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391 Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610 L L+ + R +M +D+D++K +ND G A GD++L + + + L+ D LA Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450 Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 RL G+ FGI+L + + + + + T S+G T Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726 E L++A++A Y AK +G N V+ F R + + + LA+E L P Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570 Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784 I+ L + + +E L++ + F+ AE ++ I+ +++E R ++ Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630 Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 PI IN++ + D + + L ++ P I +E+V + N Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + + L+ G +LDDF S YL ++P D +K +GS + A+++ Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947 I + + IA+ + ++ L +G DY Q + +PL F+ Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 796 >gi|82701462|ref|YP_411028.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC 25196] gi|82409527|gb|ABB73636.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196] Length = 951 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 119/574 (20%), Positives = 238/574 (41%), Gaps = 13/574 (2%) Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441 I + + + + +F + E + + GD V D P + G + Sbjct: 377 IQTQLRRDLTEREIAEKALFEEKELLRVTLSCIGDAVITTDTEGSVTYLNPVAEAMAGCS 436 Query: 442 SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRI 499 S G P+++ IH + + + + + L + D Q + Sbjct: 437 SDDAKGLPLQDVFQIIHAETNELASSPAERVLRNKETVSLNSHALLIRRDGQTFPIEDSA 496 Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559 P+ + NG I+ + + D++ +K + A D LTG+ NR F RL +L+ Sbjct: 497 APIRDQNGSIIGVVLVFRDVSHAQKMAMEMRYQATHDALTGLINRHEFERRLKQVLERDK 556 Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619 T++ +D+D++K +ND G GD++L LT + L+ D LARL G+ FG+ Sbjct: 557 --GADEHTLLYLDLDQFKIVNDTCGHLAGDELLKQLTSLLQAKLRKDDTLARLGGDEFGL 614 Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679 +L + + ER ++ SIG A+++ + T S++L+ A+ Sbjct: 615 LLERCPRGSAFRVAEVLRQTVQEFRFVWEERIFSLGISIGLATFSGGEQTFSDVLRMADT 674 Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLM-DEE 734 A + AK +G N V+ + ++ E L A++ L I+ L Sbjct: 675 ACFLAKDKGRNRVQLYASDDKNLEKRRGEMGWVERLHKALDKQRFVLYSQKILPLSAPSS 734 Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794 E L++ + F+ AE ++ ++ +++ S + Sbjct: 735 TSHYEILLRMKGENGELVPPMAFIPAAERYGLMPQLDRWVITNAFAQYASHPSRGIKDTC 794 Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854 IN++ + D L + + ++ P+ I +E+V + N ++ L+ +L+++ Sbjct: 795 T--INLSGASICDEHLYDFVVDQFKQSQIDPAGICFEITETVAIANLTQAATLIRKLKEL 852 Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912 G +LDDFG+ S +YL ++ D +K +G+ + G A++ +I + ++ Sbjct: 853 GCRFSLDDFGSGMSSFTYLKHLLVDYLKIDGAFIKGMLSDPIDHAMVEAINHIGHVMKIQ 912 Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 IA+ + E ++ L ++G DY Q + P Sbjct: 913 TIAEWVEEESFLEALRKIGVDYAQGYAIEEPRPA 946 Score = 65.0 bits (157), Expect = 6e-08, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 9/141 (6%) Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 ++ + + D + + + V + + G L I R Sbjct: 252 KAEQKFRGLLEAAPDAIVIVNRNGEIVLVNSQTEKLFDYQREQLLGKKMEML--IPPRYR 309 Query: 462 DN---FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518 FR R + E D + I + P+ G + D Sbjct: 310 SKHPGFREDFFRAPRTRPMGIGLELYGLRRDGTEFPVEISLSPLETEEG--ILVSSAIRD 367 Query: 519 ITEQKKSLEGILCNAFQDNLT 539 ITE+K++ E I +D LT Sbjct: 368 ITERKRTKE-IQTQLRRD-LT 386 Score = 64.2 bits (155), Expect = 1e-07, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 11/127 (8%) Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHINDRDNFR 465 + D + + V + G ++ + G L +H +R Sbjct: 140 LDSIPDGIVIVNSTGRIVLVNTQTEKLFGYSAHELCGQPVEMLLPPRKRGLHSGER---- 195 Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525 + R +E D + I + P+ G I DI+++KK+ Sbjct: 196 AAYFTHPHSRTLVADWELYGFRKDGTEFPVEISLSPIETDEGRFS--ISAIRDISDRKKA 253 Query: 526 LEGILCN 532 + Sbjct: 254 EQKFRGL 260 Score = 51.9 bits (123), Expect = 6e-04, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 28/120 (23%), Gaps = 3/120 (2%) Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467 L + V +I G L + R Sbjct: 12 KLVLDEMPGGAIVTTGDGVVVYWNKGAQSIFGYTVAEALQRRLTELVG-APDHRPKINQS 70 Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 L + + E R D ++ + + +S + + +IT K + Sbjct: 71 LRN--THETRASVDEILCRKKDGSLLYVSMSCKVLSQDQRQDGYVLITSTNITHIKALRD 128 >gi|289675549|ref|ZP_06496439.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5] Length = 832 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 123/440 (27%), Positives = 232/440 (52%), Gaps = 7/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + A D+LT +PNR + L I+ + + + +V+ ID+D++K +N Sbjct: 381 ERYDAKNKLTYLAENDSLTRLPNRWFLSNYLREIISRTTSAPDA-VSVIFIDLDRFKAVN 439 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ + I A + Sbjct: 440 DTMGHSVGDQLLIQAGRRLRDCIDENSVVARLGGDEFSIVVTHKVYSESLIKSLATQVVD 499 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL ++I V+AS+G A++ + +LKNA+ AMYHAK G N+ + + Sbjct: 500 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYDARM 559 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A+E E L + P + L+D I GLEAL++W+HP+ G IS ++F Sbjct: 560 NESLTRRLQTETLLRGALERDEFILHFQPKVSLVDGRISGLEALLRWNHPEQGMISPADF 619 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + ++++ ++ + SW + I IN++ + L L E ++ + Sbjct: 620 IPILEDTGLIIPVGVWVIRKVCETLKSWEKNNIRL-VPIAINLSVRQLQVKGLAETVKHI 678 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 679 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 738 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + ++ L GCD + Sbjct: 739 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQM 798 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + P+ ++K Sbjct: 799 QGYLFSKPVISEECAAMIKS 818 Score = 53.4 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 14/242 (5%) Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358 +SF + A + + + + + + +I + G+ L L A+ Sbjct: 3 LSFNAERIAAELYSLVIQATLFAGFFLLISLTLMGFMIKRSLAHLGKLHSYEAEIASGAV 62 Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418 ++ + + + T G + + + + A+ IV Sbjct: 63 A---AEAMLVADAPMEIQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEVS-IV 118 Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRR 476 + T + + + I++ + + Sbjct: 119 CEVSASGRITYVNERFVTSSQHSRAELLE--------LTIDEVWTGMSSANESWQWAPEN 170 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 E R+ + W + P+ + G + +YI I DIT++K+ IL NA + Sbjct: 171 EVWNGEVRLAGRTGKVAWHRRTVIPILDDLGGVEKYICIDIDITDRKEFEVAILDNARRQ 230 Query: 537 NL 538 NL Sbjct: 231 NL 232 >gi|254563359|ref|YP_003070454.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens DM4] gi|254270637|emb|CAX26641.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) precursor with PAS sensor [Methylobacterium extorquens DM4] Length = 567 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 120/479 (25%), Positives = 213/479 (44%), Gaps = 31/479 (6%) Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 RVR + + P+ + D+TEQ A Q+ LTG+ Sbjct: 83 VRVRLTLGGDRRVEAALAPL-----STGGFALTFEDVTEQ----LRGAALARQEPLTGLC 133 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR DRL L +A V+++D+D++K +ND LG VGD +L + R+ Sbjct: 134 NRVGLHDRLDAALIEAART-GAPLAVLMLDLDRFKTVNDTLGHPVGDALLRKVAERLRRA 192 Query: 603 LKFPDILARLSGNRFGII------------LISENNSLKIADFAIAMRKSIAMPINLLER 650 + D++ARL G+ F I+ A + + + Sbjct: 193 TRSGDLVARLGGDEFAILQVDPQVGPQLGTHTGVEQPHAAEALARRLVDLVGRTYVVDGH 252 Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708 + V S+G A + + ++LK+A+LA+Y AK G F + + ++ Sbjct: 253 MLNVGVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPAMNAQMQARRGLE 312 Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768 DL A+ + L + P I+L ++ G EAL++W+HP+ G +S + F+ +AEE+ +I Sbjct: 313 IDLRRAMALKQFDLAFQPQIQLESGDVTGFEALLRWNHPERGPVSPALFIPLAEEIGVIV 372 Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828 I ++L R+ W P I +N++ L E + ++++T P+R+ Sbjct: 373 GIGEWVLRTACREAARWP-----HPASIAVNLSPVQFRGGRLVETVTNVLAQTGLDPARL 427 Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888 +L +E ++ N + +L LR +G+ +++DDFGT S LSYL PFD +K + S + Sbjct: 428 ELEITEGALLENTDSVLDVLNGLRALGVKISMDDFGTGYSSLSYLQKFPFDKIKIDQSFV 487 Query: 889 TGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945 G AI+R+I + ++ A+ + + + GC +Q P+ Sbjct: 488 RGMEGNAECGAIVRAIARLGASLGMRTTAEGVETATQLDAIRAEGCTEVQGYLTGRPMP 546 >gi|118593438|ref|ZP_01550818.1| putative kinase/esterase [Stappia aggregata IAM 12614] gi|118433917|gb|EAV40575.1| putative kinase/esterase [Stappia aggregata IAM 12614] Length = 759 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 127/452 (28%), Positives = 224/452 (49%), Gaps = 12/452 (2%) Query: 509 ILRYIGIANDITEQKKSLEGILCNA-FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 ++ + +T++ E +A D L+G+PNR F LT L+ SA + Sbjct: 293 VIAVTIFTHQMTKRLAHSEARAVHASRHDALSGLPNRARFHTLLTETLEESAA-EGTNTA 351 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V+ ID+D +K IND LG + GD V+ ++ +R+ ++ I+AR+SG+ F +++ + + Sbjct: 352 VVYIDLDHFKDINDTLGHSAGDKVITAVAQRLHRVIPDTGIVARISGDEFAMVIRNCEDD 411 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + + ++ I PI + RE+ + S+G A E+L+ A++A+Y AK Sbjct: 412 VWLEYILDQVQDEIGRPIMIGRRELHASLSMGAAVAPRDGNDPDELLRKADIALYDAKAN 471 Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N F + + + +L LA++N EL L Y P + IV +EAL +W Sbjct: 472 GRNRRSFFEPNMEHHVQSKDRLSRELRLALKNDELDLAYQPQSDTSAKRIVSVEALARWT 531 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 IS ++F+ +AEE +I + +++L + W P I + +N++ Sbjct: 532 KEDGTVISPAQFIPVAEETGLINDLGIWVLNKACAKAHEW------PGITVSVNVSPNQF 585 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 E + A+++ P R+++ +ESV G + L RL+ +G+ + LDDFG+ Sbjct: 586 KHPRFVEKVMAILATNNLPPQRLEIEVTESVFAGRNDSVLKALRRLKNLGVKVALDDFGS 645 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PFDT+K + ++ AIL SII + K + TI+A+ I + Sbjct: 646 GYSSLSYLRRFPFDTLKIDRDFVSDMNGNAEAEAILVSIIQLGKALGMTIVAEGIETQEQ 705 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 I+ L C+ +Q +++ PL ++ K L E Sbjct: 706 IRFLQAHDCNRMQGFYISRPLTDTALTKFLDE 737 >gi|86357036|ref|YP_468928.1| putative signal-transducer protein [Rhizobium etli CFN 42] gi|86281138|gb|ABC90201.1| putative signal-transducer protein [Rhizobium etli CFN 42] Length = 634 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 147/574 (25%), Positives = 261/574 (45%), Gaps = 33/574 (5%) Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRN 451 +Q + + + +D + + GL + I Sbjct: 63 SALNQAFDGQKRLFEIVLNNLPLGLSVFDAGQRLTLYNLRFPQLFGLTPEDVAAGATIAE 122 Query: 452 WLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN---- 504 + + N+R R + +R + W++ R + + Sbjct: 123 LIGKMRGNERTASKPVRQTARPSLAKTGSSS-----IRRRE----WLMHDGRIIQSVVTI 173 Query: 505 -SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 S+G I I DITE +K+ E I A D LTG+PNR F +++ T L + + Sbjct: 174 LSDGSS---IAIHADITEDRKAAERISYLAHHDPLTGLPNRMYFREQVDTRL--AQRKPH 228 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623 + ++ +++D++K IN+ +G++VGD +L + RI +ILARL + F I+ Sbjct: 229 EQIALVHLNLDRFKSINNTIGVSVGDKILQQVAERIRASAGSENILARLGSDEFAILQTG 288 Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683 + + A +R ++ P E+++T++ S+G A + + +LKNA +A+ H Sbjct: 289 KQQPRTVTALADQIRSELSEPFLNGEKQVTLSVSMGIAIAPENGGETDILLKNAGVALSH 348 Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741 AK G F ++ ++ DL AVEN E +L Y P+ L + I G EAL Sbjct: 349 AKADGRKRERFFTGEMEAQMQLRHALEADLRAAVENEEFHLHYQPLYDLAERRICGFEAL 408 Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801 I+W+HP G + +F+ +AEE+ +I I ++L R RD W + I + +N++ Sbjct: 409 IRWNHPVRGRVPPMDFIPLAEEVGLIVDIGRWVLRRACRDAAQWPE-----NIKVAVNVS 463 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + ++L + + ++ SPSR++L +ESV+M N +L L+ GI +++D Sbjct: 464 AIQFSGSDLTQDVSEALAAAGLSPSRLELEITESVLMENLNEVLPILHALKDRGIHVSMD 523 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919 DFGT S LSYL PFD +K + S + ++ AI+R+II + + + + + Sbjct: 524 DFGTGYSSLSYLSSFPFDKIKIDKSFVNDIVDNKEAYAIMRAIILLGDALGMRVTVEGVE 583 Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 + L CD IQ H++ P + LL Sbjct: 584 TAAQLALLECEECDEIQGYHISPPRPVRDVPHLL 617 >gi|302189319|ref|ZP_07265992.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 972 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 121/440 (27%), Positives = 236/440 (53%), Gaps = 7/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + + A D+LT +PNR + L I+ + + +V+ ID+D++K +N Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSSPDA-VSVIFIDLDRFKAVN 579 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ + I A + Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHPVYSESLIKSLAAHVVD 639 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL +++ V+AS+G A++ + +LKNA+ AMYHAK G N+ + + + Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYNATM 699 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A+E +E L + P + L+D +I GLEAL++W+HP+ G +S ++F Sbjct: 700 NESLTKRLQTETLLRGALERNEFILHFQPKVSLVDGKISGLEALLRWNHPEQGMVSPADF 759 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + ++++ + + SW + + I IN++ + L L E ++ + Sbjct: 760 IPILEDTGLIIPVGVWVIRTVCETLKSWEENNIRL-VPIAINLSVRQLQVKGLAETVKHI 818 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + +P+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 819 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + ++ L GCD + Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLELLVTYGCDQM 938 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + P+ + ++K Sbjct: 939 QGYLFSKPVISDECAAMVKA 958 Score = 56.1 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 32/266 (12%) Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388 ++ AV + +++ + I +A +L + G + +L+ ++ Sbjct: 157 LVIQATLFAVFFLLISLMLMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215 Query: 389 HVLATGYFS--------------QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434 A + + + + + A+ IV + Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274 Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQF 492 T + + + I++ + + E R+ + Sbjct: 275 VTSSQHSRAELLE--------LTIDEVWTGMSSANEPWQWAPENEVWNGEVRLSGRTGKV 326 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550 W + P+ + G + +YI I DIT++K+ IL NA + NL + +Q+ + Sbjct: 327 AWHRRTVIPILDDLGCVEKYICIDIDITDRKEFEVAILDNARRQNLIALFGQQALTEENV 386 Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572 L L + + + ++V+D Sbjct: 387 SALGELAALTAAQGLNLSKAALLVVD 412 >gi|238916473|ref|YP_002929990.1| histidine ammonia-lyase [Eubacterium eligens ATCC 27750] gi|238871833|gb|ACR71543.1| histidine ammonia-lyase [Eubacterium eligens ATCC 27750] Length = 723 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 130/576 (22%), Positives = 249/576 (43%), Gaps = 32/576 (5%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILGLAS 442 +I + + + + S + + G + + + + + Sbjct: 163 AMIIHSIAQSKVINNSLISSYDVLQKILDNIGSGIIVCSKNSGNILFENDMASHVT---- 218 Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMIIRIRP 501 R+ R L+ + + + + W +R Sbjct: 219 ----------------EVRETIRECLEEVFQNKDISGHIGTPMERYNTESGLWFEVRFSE 262 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561 + +G + + A DIT++KK+ + I A D LTG+ NR L ++ + Sbjct: 263 LKWIDGSDV-VVATAADITQKKKNQQKIEYQAHNDFLTGLYNRMKCEVDLRKVIRRTEKA 321 Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621 L+ V+ +D+D +K IND LG GD +L + + + R+ G+ F II+ Sbjct: 322 -GLKGAVLFLDLDDFKHINDGLGHQYGDILLQQIAAGLTGIPGLRGHCYRMGGDEFVIII 380 Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681 E +++ ++ P L+E E T S+G A + + + E+ + A++AM Sbjct: 381 EPEI-YNELSKIVTNIKTLFNKPWYLMETEYFCTMSMGIALFPDNSVDVHEITRMADVAM 439 Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVG 737 Y AK G N + S R+ I+ ++ A+ N +E + Y P++ + + Sbjct: 440 YEAKRSGKNGYAYYSSEVENSTAKRLDIENNMRQAISNEINEFVVFYQPVVNVNTQMCTS 499 Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797 EAL++WD G + EF+ +AE L +I +I ++LE R W D P +I Sbjct: 500 CEALVRWDSKALGFMGPGEFIPLAEYLGLITSIGDYVLEEACRRCKIWND-NGHPDFYIN 558 Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857 +N++ LL ++ E ++ ++ KT +P I L +ES + + +R ++ L+K+G Sbjct: 559 VNLSVVQLLQKDVVENIKRILDKTGVNPKNIVLEITESFAINDMQRVMEIITGLKKLGPR 618 Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915 + LDDFGT S L+Y+ +P D +K + + + E A ++ I+ ++K I T I+ Sbjct: 619 IALDDFGTGYSSLNYIKQLPLDIIKVDKTFIDDIVEDDYAQAFVKLIVDLSKTIGTKIVV 678 Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + + + + L +G DYIQ + P+ N + Sbjct: 679 EGVEHKEQFELLKSLGVDYIQGYYFGKPVPANIFEE 714 >gi|189423749|ref|YP_001950926.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Geobacter lovleyi SZ] gi|189420008|gb|ACD94406.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Geobacter lovleyi SZ] Length = 651 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 118/442 (26%), Positives = 218/442 (49%), Gaps = 5/442 (1%) Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 I T + + I AF D LTG+PNR L + + ++N + + ++D Sbjct: 177 IETIRLRTAHEHANARIHRLAFFDTLTGLPNRNHLAGLLADSIAAAKQNNN-QLALFLLD 235 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632 +D ++IN+ G GD +LV + +++ L+ ++AR G+ F II+ ++ K+ + Sbjct: 236 LDYIREINETYGHETGDWILVQVAQKLCGLVDDSALVARFGGDDF-IIIYEQSTVHKVRN 294 Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692 A + +I P R +++ SIG A + T +++L A+LAM K GG + Sbjct: 295 LAKHILAAIKQPFLFDARSFSISGSIGIAFYPDDADTPTDLLSRADLAMSKVKGAGGGYC 354 Query: 693 -ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751 +S + ++ + + L A+ L+L Y P + L +VG EAL++W P G Sbjct: 355 LYKRDMSHLLTRKLELVQRLECALAEGNLHLYYQPKVELYAGMMVGAEALLRWQDPVLGW 414 Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811 +S +EF+ +AE ++ I ++L+ + I SW+ + I +N++++ D Sbjct: 415 VSPAEFIPVAEGRGLMPQIGEWVLKTACQHIKSWKSKGLNCRGKIAVNVSAQQFGDPYFL 474 Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871 E + ++ +T PS I+L +ES +M +PER ++ LR +G S+ +DDFGT S L+ Sbjct: 475 ERVARVLEETGVLPSNIELELTESCLMDDPERMSEIMKSLRGMGFSIAIDDFGTGYSSLA 534 Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929 YL P DT+K + + + AI+ +I+ +AK + +A+ + E L + Sbjct: 535 YLKRFPIDTLKIDQTFVKNMLDDNNDKAIISTILAIAKQMGLMTVAEGVETEEQRCALQK 594 Query: 930 MGCDYIQDSHVASPLGFNSILK 951 +GC Q + P + + Sbjct: 595 LGCVLAQGYYFCRPEPMDDFTE 616 >gi|317407292|gb|EFV87267.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) [Achromobacter xylosoxidans C54] Length = 665 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 143/619 (23%), Positives = 258/619 (41%), Gaps = 14/619 (2%) Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401 A + + I + I L D IQ LVG + G + + + Sbjct: 50 QAQAIRALTGITASLRIDIVLYGDPIQLRLVGRKINPNEWAGTASAHSDTDSVA--RDLV 107 Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461 V + ++ D G + G + ++ + Sbjct: 108 EGLSFAETVVSEANSVIVIVDQHGRVQRFNKVSEEYTGKREQDIVGR-SVFDMFMTREEA 166 Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521 R + F R + E + ++ S S + I DITE Sbjct: 167 AASRRNIAEFYK-RGQSYEVERLINTVKGPRLFLFRNKFVTSGSGEKRVYLICSGTDITE 225 Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581 ++++ E + A D LT +PNR + RL T L + R V+ +D+D +K+IND Sbjct: 226 ERQAQERLRVLANTDVLTNLPNRHAITTRLKTALA---EGEGARGGVLFLDLDNFKRIND 282 Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641 G GD +L S++ I L LARL G+ F ++L + ++ A + + + Sbjct: 283 HYGHGFGDRLLKSVSVAISSCLAPGQTLARLGGDEF-LVLQEHAEAWQLEATAGRIIERL 341 Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701 P E+ + SIG A + ++++A++AMY AK G + F+ R Sbjct: 342 REPFRQELIEVYTSCSIGIAMYPEHGDDLDSVVRSADIAMYVAKEAGRHTYRVFQPEMDR 401 Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759 + V + +L A+ L L Y P + E+ G+EAL++W P+ G I S F+ Sbjct: 402 RNADYVWLDTNLRKALAEGHLMLYYQPKLAGRSGEVDGVEALLRWRSPERGMICPSVFIP 461 Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819 AEE +I + ++++ AR +W+ + + IN++++ L D + + Sbjct: 462 YAEESGLISQLGVWVMREAARQAAAWKRDGLD--LRVAINMSARQLDDKGVVSEFMRAVG 519 Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879 +P + + +ES ++ + + L+ + R++G + LDDFGT S LS L IP D Sbjct: 520 DAGLAPCLLDIELTESCLIEDEVAAIELMKQFRQLGARVHLDDFGTGYSSLSQLARIPLD 579 Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937 +K + S + G E A+ R+I+ +A+ +E +IA+ + + + L +G D Q Sbjct: 580 AIKLDASFVRGVNENPVSQALARAIVAVARTLELQVIAEGVETQEETAFLDTLGVDAKQG 639 Query: 938 SHVASPLGFNSILKLLKER 956 A P+ + L +R Sbjct: 640 YLYAKPMPAAELTTWLAQR 658 >gi|152965534|ref|YP_001361318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kineococcus radiotolerans SRS30216] gi|151360051|gb|ABS03054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Kineococcus radiotolerans SRS30216] Length = 768 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 131/585 (22%), Positives = 255/585 (43%), Gaps = 31/585 (5%) Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451 + + +R + S D+ A ++GL + + G Sbjct: 179 EDERAQAALRAAEDRFATLAQSSPVPTIVSDVGARLSRVNDAFAELIGLPAEELCGT--A 236 Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511 WL ++ ++R + + R L + R+R A Q W+ +R+ P G Sbjct: 237 WLTHVVDDERSGVVEAVARVLSGERVTL--DTRLRNAAGQVRWVAVRLAPSRTP-GYGAG 293 Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL--RPTVM 569 +IG D+T++ + A D LTG+PNR + L+RL +L L V+ Sbjct: 294 FIGTVEDVTDRLAREHRLAYQAQHDLLTGLPNRLALLERLADLLALPGEAPGPGTDVGVL 353 Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629 ++D+D +K +ND LG GD VLV + RR+ ++ D++AR G+ F ++ ++ Sbjct: 354 MVDLDDFKTVNDGLGPEAGDAVLVEIARRLAGTVRSGDVVARPGGDEFVLVCAGLDDLGA 413 Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG- 688 + A + ++ P+ + + ++ASIG S E++++A +A++ AK G Sbjct: 414 VEATARRVLDAVLAPVEVNGLRLRLSASIGVVLLDGSSCGPEEVVRDAGIAVHEAKAAGG 473 Query: 689 -GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDH 746 + V + + DL A+ + + Y PI+R +++ LEAL +W H Sbjct: 474 GRWTLLDEDVRHRARRALRLVADLREALSRGAVDVHYQPIVRPGRPAQVLSLEALCRWTH 533 Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-----ANMPPIFILINIA 801 P+ G I F+ +AE ++ A++ +L RD+ +WR + P + +N++ Sbjct: 534 PELGAIPPDTFIELAERANLVPALDAHVLAVACRDLATWRAAHAAGDLPLTPTHVAVNVS 593 Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861 + L G++ ++ S + L +E+ + + R +L LR+ G + +D Sbjct: 594 AVSLAAEGFAAGVRRTVAGAGLQLSDLCLEVTETALASDLRACRTVLEELRRDGARVAID 653 Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII------------PMAKNI 909 DFGT S L+YL +P D +K + S + + + +A+ + Sbjct: 654 DFGTGYSSLAYLKDLPVDHLKVDRSFVRDL----RTAVDGVQGGPARAVAAAVVSLARTL 709 Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954 I+A+ + + +GC+ +Q + PL ++ +LL+ Sbjct: 710 GLGIVAEGVETLEQDAVVRDLGCEAVQGWLYSRPLPREALAELLR 754 >gi|296270782|ref|YP_003653414.1| PAS/PAC sensor domain-containing diguanylate cyclase/phosphodiesterase [Thermobispora bispora DSM 43833] gi|296093569|gb|ADG89521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thermobispora bispora DSM 43833] Length = 895 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 130/586 (22%), Positives = 253/586 (43%), Gaps = 26/586 (4%) Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437 IV+++ + ++ T I + +GD+++ D+ Sbjct: 316 IVLVLLGRLFVLLVETAGMRDLIDLGDRQLRQFAESTGDLMFVCDLDGVIKEVAGVAT-- 373 Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQF 492 G + + Y+H D + +L G + R RAAD + Sbjct: 374 YGHRPADLVN--ASIADYLHPEDVPAVQQLLQRMAADEDGVEPHGSRRIGCRFRAADGTW 431 Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552 + + D+++Q + F D +TG+PNR F +R+ Sbjct: 432 RPTESVATRHVLGDD---LVLITVRDLSDQVALRNQVTHLTFHDGVTGLPNRSYFEERVR 488 Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612 LD A R V+ +D+D + +ND +G A GD +L RR+ + LAR Sbjct: 489 EALDHRA----GRTAVIFVDLDGFTAVNDSVGHASGDYLLGQAARRLRSAVGPGATLARW 544 Query: 613 SGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670 G+ F +++ ++ I +R A P + +R++ +TAS+G A + ++ Sbjct: 545 GGDEFAVLVEGTKPGDAQVIDLAERLVRAVSAEPFRVADRDVALTASVGVA-FDEDGQST 603 Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPII 728 ++L+NA++AM AK GG VE F S ++ DL AV + + Y P++ Sbjct: 604 GDLLRNADVAMSRAKELGGRRVEIFATHMHASVLQRLELASDLQRAVAEKQFTIEYQPVV 663 Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788 L + +EAL++W + +F+ IAEE +I +++ ++L R++++WR+ Sbjct: 664 DLETCNVTAVEALVRWWRGS-TFVPPEKFLGIAEETGVIVSLSEWILREACREVVAWRES 722 Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848 + +N++++ + D E + + ++ P + L E +++ + + L Sbjct: 723 GWDIG--LSVNLSARQINDPRFVEKVAGALEESGLPPGALTLEVVEEMLVAGADETMKKL 780 Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMA 906 LR +G+ L +DDFGT + L+ L IP D +K + S ++G + R+I+ + Sbjct: 781 AELRSLGVRLAIDDFGTGYASLASLRQIPVDMIKIDPSFVSGLGRDETLTLLTRTIVRLG 840 Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952 ++ ++A+ I ++ L MGC Q V+ P+ + L Sbjct: 841 HDLGLVVVAEGIERPEQLELLREMGCPRGQGYLVSRPMAARRVDSL 886 >gi|329903344|ref|ZP_08273437.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480] gi|327548422|gb|EGF33100.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480] Length = 1035 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 133/485 (27%), Positives = 234/485 (48%), Gaps = 28/485 (5%) Query: 496 IIRIRPMSNSNGDILRYIGIAN--------------DIT--------EQKKSLEGILCNA 533 P+ G IL + I DI E + + + I A Sbjct: 547 RCSSWPILAQRGQILGVLSIFQLPKDHPGSELMQLIDIAIDLASITIESRYAEQRIRRLA 606 Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593 D LTG+PNR +L L + + V+ ID+D++K IN+ G GD VL Sbjct: 607 HYDELTGLPNRVLCGQQLDKALLHAQRHGR-QVGVLFIDLDRFKNINETFGHDAGDTVLR 665 Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653 ++ R + L+ D++AR G+ F +++ ++ L++ D A + + + P + +E Sbjct: 666 EVSLRFLDTLRPSDLIARAGGDEFIVLVDGYDDPLELGDIARHLLQVASRPFAIAGQECQ 725 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711 + ASIG AS+ ++ +LKNA++AM+ AK G N+V+ + + +R+ ++ L Sbjct: 726 LGASIGIASFPQDGHSAQVLLKNADIAMHRAKDVGKNNVQYYSIDMHTHSVERLALEARL 785 Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771 A+E EL + Y P I +M I G EAL++W+HP+ G + +EF+ +AE+ +I A+ Sbjct: 786 QRAIERRELVIHYQPKIDVMTGRITGAEALVRWNHPERGLLHPAEFIDLAEDTGLIGALG 845 Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831 + +L+ DI +R I IN++ D L + M +I PS ++ Sbjct: 846 MLVLDATCADINDFRLAGIEVG-RIAINLSGSQFNDTRLLDHMLQVIRTRQVDPSSLEFE 904 Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891 +E +VM PE++ L+ + ++G +L +DDFGT S L+YL P +VK + S + Sbjct: 905 ITEGMVMHKPEQAIALMEEMIRLGFTLAIDDFGTGYSSLAYLKRFPVGSVKIDKSFINDI 964 Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949 AI+++II MA+ + ++A+ + + L GCD Q + P+ Sbjct: 965 PDDPNDSAIVQAIIVMARTLGMKVVAEGVETRTQLATLEAFGCDEYQGYFFSKPVAAADF 1024 Query: 950 LKLLK 954 + L + Sbjct: 1025 IALAR 1029 Score = 39.9 bits (92), Expect = 2.3, Method: Composition-based stats. Identities = 52/493 (10%), Positives = 138/493 (27%), Gaps = 66/493 (13%) Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACI------AILFCMSFYYPMVTASIARITLASIV 319 + L YL + + I A + I+ + +I Sbjct: 171 LGMLCAYLTLDYFDEYYHRIAEGRQATVSMHSDEGIVMIDWPFDARRLGEDISTNAGAIR 230 Query: 320 L-YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378 + + + ++ + A + A+ + + + Q L+ Sbjct: 231 IQAGSREGFFESVEMNDSAEPVFLAYRKLAALPLTVVYTYRLHEALLPWQQRTSNRLLFS 290 Query: 379 VILIGFTVI------QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432 + G ++ QH+ + + ++ R + + D + + + V P Sbjct: 291 GAITGLILLLTLLLLQHIRRLHRSEEHLAANENRYRMLYESATDAILLINHRHEYVDCNP 350 Query: 433 DIATILGLA-SGSMHG-PIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAA 488 + +A + G + +P + D +L + + E+ + Sbjct: 351 AALILFDVANKNQLIGKRFEDAMPSVPRADGKQHSPGKLLSLALDGQSQLF--EWAMLRK 408 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548 + I + +N ++L + + DI +K++ L Sbjct: 409 -GVPFFNEITLSRAHINNEELL--VAVFRDINARKRAELLQESQ------------NQLL 453 Query: 549 DRLTTILD-----------LSATDDNLRPTVMVID--IDKYKKINDVLGIAVGDDVLVSL 595 ++ + L+ R V+++D + ++ +G + L S Sbjct: 454 HMISAGIGLQPIVHAITQFLARHAPGTRSMVLLVDAGLPRFSS---AIGAGFTVEFLDS- 509 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 R+ + + + + ++ A + + PI +I Sbjct: 510 AARLEIVDHATTM------SEAVLTRAPAMSAGPATSAAAFPGRCSSWPILAQRGQILGV 563 Query: 656 ASIGFASWTSSKITSSEMLKNA-ELA--------MYHAKHRGGNHVESFRVSSFRSDRVM 706 SI +++ A +LA R ++ E + + Sbjct: 564 LSIFQLPKDHPGSELMQLIDIAIDLASITIESRYAEQRIRRLAHYDELTGLPNRVLCGQQ 623 Query: 707 IKEDLCLAVENSE 719 + + L A + Sbjct: 624 LDKALLHAQRHGR 636 >gi|311696424|gb|ADP99297.1| response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [marine bacterium HP15] Length = 741 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 110/443 (24%), Positives = 226/443 (51%), Gaps = 6/443 (1%) Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +I ++ + + D LTG+ NR+ F++ L+ L+++ + ++++D+D++ Sbjct: 288 QEIEQRTAIQKDLARLESTDTLTGLANRRFFMEDLSHTLNIADRQMR-QVALVMLDLDRF 346 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 + +ND LG GD++L+ ++ R+ L ++A G+ F ++ I Sbjct: 347 QTLNDSLGHQFGDELLIKVSERLNRLSNERLLVAYSGGDEFMFCQQQVDDIDDIIHLLGQ 406 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 +++ P + + ++T ++G A + S + + +L+NA++A+Y AK +G N + + Sbjct: 407 IKQCFDQPYEVQGQSHSITGTMGVAVYPQSGLDADTLLRNADIALYRAKEQGRNTYQFYT 466 Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754 + + ++ +DL A+ N+E L Y P + L EI +EALI+W HP+ G + Sbjct: 467 EGMQEREVMRLELDKDLSQALANNEFVLFYQPQLNLDTGEIQSVEALIRWRHPRRGLLPP 526 Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814 EF+ +AEE I I +++ R + +W + I +N++ ++L D +L + + Sbjct: 527 VEFIPLAEESGRITDIGRWVVMAACRQLAAW-KGTPQDGLRIAVNLSGRELDDEDLVDHI 585 Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874 + ++ R+++ +E + + N E +R L RL ++G++L +DDFG S L YL Sbjct: 586 REALAAENVPADRLEVELTEEIFIQNIEHNRNQLSRLHQLGVNLAIDDFGVGYSSLGYLR 645 Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P D +K + S +T TE I R++I +A N+ ++A+ + E + L C Sbjct: 646 DFPVDLLKIDRSFITEVTERHDDAVITRAVINLAHNLGIQVVAEGVETEEQLSFLKNQRC 705 Query: 933 DYIQDSHVASPLGFNSILKLLKE 955 ++ Q ++ P+ + + K L Sbjct: 706 NFAQGYLISRPIPVDDLEKALAS 728 >gi|160898708|ref|YP_001564290.1| PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1] gi|160364292|gb|ABX35905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Delftia acidovorans SPH-1] Length = 947 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 114/439 (25%), Positives = 207/439 (47%), Gaps = 7/439 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E++++ I AF D LT +PNR L + L +++ + V+ ID+D++K++N Sbjct: 493 EREQARRRIRQLAFYDGLTTLPNRSLLLAQAEQALSVAS-HEGHELAVVFIDLDRFKQVN 551 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG GD +L S+ +RI L+ DI RLSG+ F I+L + ++ + Sbjct: 552 DSLGHPAGDRLLCSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVI-ERLQSA 610 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700 + P + + + TAS G A + + +L A++AMY AK G F Sbjct: 611 LGEPCMIDDVSLASTASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRGLYSFFSPEMN 670 Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 R +R++++ L A+ + L L Y P + L D + G+EAL +W H ++G IS + F+ Sbjct: 671 RLAQERLVLETALRDALRSGGLRLHYQPQLDLKDGRLYGVEALARWSHAEFGEISPARFI 730 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I + + L R + WR + P + +N++ + +L + + Sbjct: 731 PLAEECGLIGELGTWALREACRQLGEWRSRGIDVPA-MSVNLSPTSFHNLDLPRMIADTL 789 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 P + L +ES+++ + L + G+ L++DDFGT S LSYL +P Sbjct: 790 EHNALKPQDLTLEITESLLLDTNPGTMRTLQAVHSQGVRLSMDDFGTGYSSLSYLRRLPV 849 Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 +K + S + E A+ +I+ + +++ T++A+ + L G Q Sbjct: 850 SELKLDRSFVADLENDEAAQALSNAILGIGRSLHLTVVAEGVETAAQNTILREQGYPVAQ 909 Query: 937 DSHVASPLGFNSILKLLKE 955 + PL + + L+ Sbjct: 910 GYLFSRPLPAADLERWLQA 928 Score = 66.5 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 15/169 (8%) Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438 + + + A + R SL + V D + Sbjct: 190 ALSHVLCIATDITARVQADRRRQEHLRRLSLVADATDAAVVIADGNWTISYVNAGFTRMF 249 Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498 G +S + G R + + + F + + + + E + D + +W+ + Sbjct: 250 GWSSEEVVG--RAPIALLVPHASPEFTAAYRAELDAGKPVYREEI-LVGKDGERYWVSAQ 306 Query: 499 IRPMSNSNGDI--------LRYIGIANDITEQKKSLEGILCNAFQDNLT 539 P+ +G + +++ +++ LT Sbjct: 307 ANPVMGPDGRLHTTVTVITDITEAKMHEVLQRRALEAMARDQ----PLT 351 Score = 63.8 bits (154), Expect = 2e-07, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 52/149 (34%), Gaps = 16/149 (10%) Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444 T+ + +A Q ++S ++ ++A+ ++ + + ILG + Sbjct: 77 TMFETRVAGTAGQQALWSTLDK-AMALA-------EFTPEGRLMRANANYEAILGYPTSG 128 Query: 445 MHGPIRNWL---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 G + + L + + +R + E R D W+ P Sbjct: 129 AEGLLHSDLCTQAHADPDAYGRWRQRWGA---GETISRVGEHR--RRDGSTCWLEATYAP 183 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530 + ++ G + + IA DIT + ++ Sbjct: 184 VLDTQGALSHVLCIATDITARVQADRRRQ 212 >gi|152995192|ref|YP_001340027.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] gi|150836116|gb|ABR70092.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1] Length = 731 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 124/431 (28%), Positives = 213/431 (49%), Gaps = 6/431 (1%) Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582 K+ + A++D LTG+PNR+ D L L + + + D+D +K+IND Sbjct: 293 KEKTAELQELAYKDPLTGLPNRRFLQDSLPKTLHNNQRRKRIS-AFIYFDLDNFKRINDT 351 Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642 +G VGD VL+ + R+ +L D++ RL G+ FGI+L + + ++ A + +SI Sbjct: 352 IGHDVGDQVLIIVGDRLNKLKAMSDLVVRLGGDEFGILLGDIGDEKQASEQANRILESIR 411 Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702 PI + RE ++ S+G A +++NA++A+Y AK +G N + S Sbjct: 412 TPIKMDSREYILSTSLGIAMIPEHGYDLVTIMQNADMALYQAKLKGKNQYAFYTEKMKIS 471 Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 +I +EDL LA++ +E + Y P + + G EALI+W+HP+ G I ++F+ + Sbjct: 472 THNLIKAEEDLTLALQRNEFEMYYQPQFNIRTNHVFGAEALIRWNHPEKGVIFPNDFIPL 531 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AE I + ++LE + R Q P I + IN+AS+ L D +Q L+ K Sbjct: 532 AESTGKIVELGYWVLESSIAYLAK-RKQEGRPDILLHINLASEQLSDPHFVALVQELLGK 590 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 I +E+ ++ + +R LL L+ +GI + +DDFGT S LS L +P D Sbjct: 591 YQVPAHLIGFEITETSILEDIHLARYLLQTLKDMGICIAIDDFGTGYSSLSQLKNLPVDL 650 Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + I+ +II MA + ++A+ + K L CD+ Q Sbjct: 651 LKIDRSFVMDLENDPDDRKIVEAIIAMAHKLNIKVLAEGVETREQWKMLAAFQCDFGQGY 710 Query: 939 HVASPLGFNSI 949 +V+ + + Sbjct: 711 YVSKAVTADEF 721 >gi|291566666|dbj|BAI88938.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 592 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 123/441 (27%), Positives = 230/441 (52%), Gaps = 5/441 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + + + +L A D LT +PNR F+++++ ++ ++ V+ +D D++K +N Sbjct: 149 QLEMANAKLLEMALHDPLTRLPNRTLFMEQVSGAMNNLKEGNSQGFAVLFMDCDRFKVVN 208 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG VGD++L+++ RI ++LK D+L+RL G+ F II+ N + + A ++ + Sbjct: 209 DSLGHTVGDELLIAIGDRIQKILKNNDLLSRLGGDEFAIIVHDVNEIEPVRNLADSILEV 268 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698 ++ P + REI + SIG + +L++A+ AMY AK G F + Sbjct: 269 MSCPFQIYSREIFINMSIGVVLSNTDYQQPEHLLRDADTAMYRAKALGRGQYHIFDPAMH 328 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 D + ++ DL A++N EL Y PII L +I +EAL++W HP+ G +S F+ Sbjct: 329 KEALDLLGLETDLRRALDNQELMAYYQPIINLETGKIYSMEALVRWQHPQRGLVSPGMFI 388 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817 +AEE+ +I I ML + W++Q + I +N++ + +L + + Sbjct: 389 PLAEEMGVITTIGTLMLVEACHQLKHWQEQKLVDEYVSISVNLSVRQFTQADLIATVDDI 448 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++++ +P ++L +ES ++ N + +R +L + R I L+LDDFGT S LSYL P Sbjct: 449 LTESGLNPKCLRLEMTESAIVENTQTARTILTQFRDRHIGLSLDDFGTGYSSLSYLHAFP 508 Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S ++ + + ++ +II ++K + +A+ I + +L + C+ Sbjct: 509 VDTIKIDKSFVSLLDGTPENLGLIPAIIGISKTLNMVAVAEGIETPEQLAQLRELQCNGG 568 Query: 936 QDSHVASPLGFNSILKLLKER 956 Q + PL + +LL Sbjct: 569 QGYFFSRPLPATQMAELLASH 589 >gi|83591897|ref|YP_425649.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC 11170] gi|83574811|gb|ABC21362.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC 11170] Length = 683 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 126/555 (22%), Positives = 239/555 (43%), Gaps = 28/555 (5%) Query: 412 LGSGDIVWDWDIVRDRVTTTPDI--------ATILGLASGSMHGPIRNWLPYIHINDRDN 463 V D + P +LG ++ +H Sbjct: 144 DHIPLGVMLSDGLGRIAYANPAFLAEDIAAVRALLGATPQALATGY------LHE---GL 194 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 RT+ + + R + + + AD Q + I P+ +G + R + + + Sbjct: 195 ARTLWEDLLCGR--VWRNDVDLPTADGQRTHSRLTIIPLRRDDGAVDRLMTVIEPRSP-- 250 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + D LTG+PNR F DRL T L + ++ + V+ +D+D +K +ND L Sbjct: 251 ATDSQAWQQVNHDTLTGLPNRVLFQDRLLTALASARRRND-QLAVLFVDLDHFKTVNDSL 309 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G + GD +L + R+ + L+ D LAR+ G+ F I L + + A A + +++ Sbjct: 310 GHSFGDQLLQQVATRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIANRILETLRR 369 Query: 644 PINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701 P L E+ + +SIG + + +L+NA+ AMY AK G N + F R Sbjct: 370 PFTLEGGHEVLIGSSIGITLFPNDAEDVDTLLRNADTAMYRAKASGRNAFQFFTEEMNRE 429 Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760 + ++ L AV +L + Y P++ +V EAL++W G I S F+ + Sbjct: 430 IQSHLDLENALRRAVRAMDLTIHYQPVVDSATLAVVSAEALVRWPLADKGFIPPSRFIPV 489 Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820 AEEL +I I ++L W+ Q + +N++ + L + + ++ + Sbjct: 490 AEELGLIDEIGGWVLWNACTQAKVWQAQ-GAKAFRVSVNVSWRQLRNPDFALRVREALEG 548 Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880 T + ++L +E +V+ +P+ L L ++G++L +D+FG+ S + L PF Sbjct: 549 TGLGAAFLELEITEGMVLRDPQGIAPALMALSEMGVALAIDNFGSGHSSIKCLRQFPFSI 608 Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938 +K + S + ++ + ++ + MA+ + T++A+ + ++ L CD IQ Sbjct: 609 LKLDRSCVADVLTSHEDAVLVETAAIMARRLGLTVVAEGVETHAQLEFLREHYCDLIQGY 668 Query: 939 HVASPLGFNSILKLL 953 PL ++L Sbjct: 669 LFGRPLPPEDFARML 683 >gi|328545199|ref|YP_004305308.1| Cyclic diguanylate phosphodiesterase domain protein [polymorphum gilvum SL003B-26A1] gi|326414941|gb|ADZ72004.1| Cyclic diguanylate phosphodiesterase domain protein [Polymorphum gilvum SL003B-26A1] Length = 683 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 123/539 (22%), Positives = 233/539 (43%), Gaps = 17/539 (3%) Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHIN--------DRDNFRTILDSFVGYRRGRLQYE 482 TP + ++ ++ + I + D + + + R+ Sbjct: 133 TPVMISMFASDGEPLYRNPASRASQIDPDTTLQNRLVDCGEAAALATALKDGKDCRIIA- 191 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 R R W I R ++ + Y+ D+TE K++ E A D LTG+P Sbjct: 192 -RTRTNRG-IRWHEITARTCKDAVTGVPAYLVSEIDVTELKETEERAQYLADNDFLTGLP 249 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR L ++ S D + + ID+D +K +ND LG GD +L ++ R+ Sbjct: 250 NRSYLQTHLPPLIVESV-DQDQPLYLYFIDLDGFKAVNDTLGHTTGDLLLRAVAGRLSGF 308 Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662 + I+ARL G+ F + + + +L DF + PI++ + VT ++G + Sbjct: 309 VGERGIVARLGGDEFLVCIPDRSGTLNAQDFGRQLLDLFLEPIDISGHVLQVTLAVGLSI 368 Query: 663 WTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720 ++++ +LA+Y AK S + +++ +++DL A++ E Sbjct: 369 CPDDGRDMDTLMRHCDLALYEAKTDRANRCTQFSMDLRERMEEKIALEKDLLRALDRGEF 428 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 + Y P + + I+ EAL++W HP+ G + S F+ EE+ +I + ++ +AR Sbjct: 429 VMFYQPRLCVQTGRILSAEALLRWQHPERGLLGPSLFIQACEEMGLIIDVGEWVYRTVAR 488 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 + I + IN++ + D EL E + L +T + R+ +ESV++G+ Sbjct: 489 QQRELGEAGID--ISLSINLSPRQFSDPELIEKILRLPEETGCAAKRLGFEITESVLLGD 546 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900 E R L R++ G + +DDFGT S L+YL P +K + + + I R Sbjct: 547 SEAIRTALRRMKAKGFEIIIDDFGTGYSNLAYLQKYPIGVLKIDQTFIKNIRT-SEPITR 605 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959 I+ + + ++A+ + + L GCD Q + + PL ++L + + L Sbjct: 606 LILSLGNVLNVRVVAEGVETREQLDWLVENGCDEYQGYYFSRPLPLAEFVELYRTQQRL 664 >gi|117922378|ref|YP_871570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] gi|117614710|gb|ABK50164.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Shewanella sp. ANA-3] Length = 706 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 122/556 (21%), Positives = 235/556 (42%), Gaps = 10/556 (1%) Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDN 463 E + + S + V+ D + + I G ++ + G +L I + ++ Sbjct: 154 EIMATTLEESAEAVYITDADNRILAVNKAMCRICGYSAEQLIGKTPEFLEAKILPSGQET 213 Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523 RG E + +D R + + + + I +DI+ +K Sbjct: 214 DCQAAMKL----RGFWHGETLKQRSDGSHFPAWQSSRRIETDDNALYH-VNIFSDISTKK 268 Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 + A D LTG+PNR L + LD D + +M +D++ +K IND Sbjct: 269 LLETQLTTRAMYDTLTGLPNRYHLKQILNSALDKLKDDPSALGALMFLDLNGFKNINDSF 328 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G ++GD VL + R+ +AR+ G+ F ++L + +I FA + Sbjct: 329 GHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQECSCKEEIQLFAEQILSLFDS 388 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702 P + ++ + SIG A + + + +++ A+ AMY AK + V + +S Sbjct: 389 PFEIEGQKFFLGTSIGIALFPTHSDQAGQLISLADTAMYSAKKNQPHLVFYDKAMSQAAE 448 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ + +L A + L Y I+ L + +G EAL++W + ++EF+ + E Sbjct: 449 LKLKLINNLRHAHSLKQFNLAYQAIVDLHTNKPIGAEALLRWQKSPNEHYEAAEFVPLLE 508 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 E +I I + LE+ + WR P + +N++ L + + + + Sbjct: 509 ETGLIITIGQWALEQACKQAAIWRASY-QPDFKVSVNVSPLQLEHVDFVGQVISALEMVA 567 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + L +ES ++ PE +R L R++ +G+ + +DDFGT S LS LG +P D+VK Sbjct: 568 LPAEALILEITESALLRQPELARQTLERIKALGVGIAIDDFGTGLSSLSRLGTLPIDSVK 627 Query: 883 FNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 + + + + +I+ +A+ ++ +A+ I + +T MG + Q Sbjct: 628 IDAEFALRLNDVSGQKLCHAIVQLAQALDIHFVAEGIETQQQKDIMTHMGQGFAQGFLFG 687 Query: 942 SPLGFNSILK-LLKER 956 P + L ER Sbjct: 688 YPSSVEQFTQAFLAER 703 >gi|115526694|ref|YP_783605.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] gi|115520641|gb|ABJ08625.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] Length = 780 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 147/742 (19%), Positives = 303/742 (40%), Gaps = 50/742 (6%) Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIF-LFMYLH---------WNRWHAKVGYIT 286 G + L L +G++ IW I +L YL+ RW + + Sbjct: 42 GIAALLTALKTGDVWIWPCALLIIAVGTLRALQTRNYLNSGTATDAASAKRWETQYRFGA 101 Query: 287 FSGIACIAILFCMSFY-YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345 + + + A + T+ Y + + + L+ + Sbjct: 102 ILYALSLGLWCVVVILGTDDPVAHMLCTTVTVGYTAGGAARNYG--RPHIVQLHLLLSCG 159 Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405 + + + A L ++ + + + + + L G + + Sbjct: 160 PMSLALVLHGGAYYYGLAALLVLFFYGLRSINLNL---HAIFVNALLAGEREAALAN--- 213 Query: 406 RQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH--GPIRNWLP------YI 456 + A+ + + R+ A ++ L MH G + + I Sbjct: 214 QFDTALNNMPHGLCMFGGKDGRLAVMNRRFARMMRLPDDFMHRSGSAADIVKACVGAGTI 273 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 + +D+ + + E A +PM+ + + Sbjct: 274 SPASGRLIVSEIDNALAGEIITVDSETTDAHA------FSWTFQPMTGG-----GTVVLV 322 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-TDDNLRPTVMVIDIDK 575 DITE++ + I+ A D LT +PNR +F D + +L ++ + ++ ID+D+ Sbjct: 323 EDITERRSTEARIIHLARYDELTALPNRVNFRDEIERLLTIAQNRGETQPAALLFIDLDQ 382 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 +K++ND LG GD +L + R+ E+L+ D +AR G+ F + + A A Sbjct: 383 FKQVNDTLGHPCGDRLLCDVANRLREMLRPEDYIARFGGDEFVVFQQHLKSDEDAAVLAR 442 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + ++ + + + ASIG A T+ I + +LKNA++A+Y AK G F Sbjct: 443 RIVDRLSERYVIDHHVVEIGASIGIAM-TAPGIKADVLLKNADMALYRAKADGRGTYCFF 501 Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 R ++ R M++ DL A+ N E L + P++ L I EAL++W+HP G +S Sbjct: 502 RDEMAQTVEARRMLELDLRRALANDEFELFFQPLVNLKTGRISTCEALLRWNHPVRGTVS 561 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 + + +AEE+ +I + ++L + + + W + + + +N +S+ ++ + Sbjct: 562 PVDIIPVAEEMGLIIDLGRWILRKACTECMQWPEA-----VSVAVNFSSQQFHQRDVMDE 616 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 ++ + + +P R+++ +ES ++ N + + L +L G+ + LDDFGT S LSYL Sbjct: 617 VRYALQASGLAPQRLEIEITESSLLRNTQWTLDALHQLHAEGVRIALDDFGTGYSSLSYL 676 Query: 874 GYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG- 931 P VK + S + G R +LR + ++ ++ +++ + I ++ ++ G Sbjct: 677 HTFPLQKVKIDRSFLEGIDTDRPLTLLRGVARLSADLGMSVVVEGIETNEQLELISADGT 736 Query: 932 CDYIQDSHVASPLGFNSILKLL 953 Q + P+ + + +LL Sbjct: 737 VTEAQGYLFSRPVPASRVRELL 758 >gi|331007775|ref|ZP_08330893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium IMCC1989] gi|330418414|gb|EGG92962.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [gamma proteobacterium IMCC1989] Length = 665 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 132/464 (28%), Positives = 222/464 (47%), Gaps = 14/464 (3%) Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563 G++ + + E + E + AF D LTG+PNR+ + L + + Sbjct: 195 GEFGELAHWFNQRTN--ELLATQEQVNSLAFYDPLTGLPNRKMLKIHIDKKLASAQKN-K 251 Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI- 622 ++ +D+D +K +ND LG +GD +L+ +R+ L+ D+ RL G+ F I+L Sbjct: 252 TCGAIIFLDLDHFKVLNDSLGHDIGDQLLIEFRKRLDLCLRKGDLAGRLGGDEFVIVLSL 311 Query: 623 ----SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678 + N + + A + S+ P L +TASIG A + ++ ++LK A+ Sbjct: 312 PAFKNHNRTKIPSAIAKQILSSLTEPFLLKGNMYHITASIGIALFDEHSSSTEDILKYAD 371 Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736 AMYH+K G N F R+ I++DL A++N L L + P + D + Sbjct: 372 SAMYHSKSNGRNTYCFFENGMQIKADQRLRIEKDLRHAIDNDGLSLAFQPQL-PTDNKCP 430 Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796 LE L++W HPK G IS +F+ IAEE +I + ++++ + + W Q + + Sbjct: 431 SLEVLVRWIHPKEGFISPLDFISIAEESMLILTLGDWVIKNTCKQMKEWEKQGIIFD-HV 489 Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856 INI+ + I + P ++ + +E V++ NP+R + RL+++GI Sbjct: 490 SINISPIQFQQVSFVHHLANTIKDSDVRPEQVMIELTEGVIIDNPDRVVEKINRLKEMGI 549 Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914 +++DDFGT S LSYL +P D +K + S + + I +II MAKN T+I Sbjct: 550 RVSIDDFGTGYSSLSYLKKLPLDELKIDRSFIQEITNDHSDVVITETIIAMAKNFGYTVI 609 Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 A+ + + L GC + Q + PL N I K LK P Sbjct: 610 AEGVETVEQKEILISKGCQFFQGFLFSKPLPPNEIPKYLKSLTP 653 >gi|262274875|ref|ZP_06052686.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia hollisae CIP 101886] gi|262221438|gb|EEY72752.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia hollisae CIP 101886] Length = 633 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 136/575 (23%), Positives = 249/575 (43%), Gaps = 20/575 (3%) Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443 + + S R GD ++ +LG S Sbjct: 64 IFHAADTSERQVLTSALESSESRFENLCQLVGDGCCVL-ADGVVLSANRVAGKLLGFDSH 122 Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502 + I + L++ + Q + R AD + + Sbjct: 123 NEILGEDIENLLISPVKGQSVEASLNALKPGQ----QLVCQAREADGNPALNVSFGSVSL 178 Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562 +G I+ A + + +++ E A D LTG+ NR F RL ++ + Sbjct: 179 LGGSGAIITLSRTAA-VPDHQQTFEK---LAQFDALTGLYNRHGFSRRLVQLI-----NS 229 Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622 N + +DID +K IND LG +GD VL + +R+ + L IL L G+ F I+L Sbjct: 230 NTPLLMFYLDIDNFKNINDSLGHHIGDRVLQDIAQRLRKRLPPDTILGHLGGDEFAILLP 289 Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682 ++ + + + I+ P +L + SIG + + +L+NA+ AMY Sbjct: 290 EHSSDEVANELSRRVVDIISQPFDLYHFSKYLACSIGMVRYPDDGKDARSLLQNADTAMY 349 Query: 683 HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740 AK RG N + ++ ++ R+ ++ +L A++N+ L + Y P + D I G EA Sbjct: 350 EAKERGRNRLVTYNQHMNKEARMRLWLEIELQKALQNNSLEVWYQPKVNAKDYTINGAEA 409 Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800 L++W HP G IS F+ +AE MI+ + ++ + + + W++ P + IN+ Sbjct: 410 LVRWKHPVEGYISPGRFIPVAERSGMIELLGRNVMREVFQTVRRWQNMKI-LPGRVAINL 468 Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860 + + + L M+ L + T +PS I +ES VM + E + +L ++ +G +L++ Sbjct: 469 SPQQFRNPNLTSHMKKLQAATEIAPSLITFELTESAVMNDGEHAIQMLNAIKDLGFALSI 528 Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918 DDFGT S LSYL P D +K + + ++ K++ ++ +II + +++ +++A+ + Sbjct: 529 DDFGTGYSSLSYLAKFPLDEIKIDRAFISDMETFPKQVTLIENIITLGRSLNMSVVAEGV 588 Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953 L + CD IQ H P+ LL Sbjct: 589 ETGKQASVLANLKCDTIQGFHFYKPMPRAEFETLL 623 >gi|163782558|ref|ZP_02177555.1| hypothetical protein HG1285_16780 [Hydrogenivirga sp. 128-5-R1-1] gi|159882131|gb|EDP75638.1| hypothetical protein HG1285_16780 [Hydrogenivirga sp. 128-5-R1-1] Length = 954 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 136/602 (22%), Positives = 260/602 (43%), Gaps = 33/602 (5%) Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS---------LAVLGSGDI 417 I+ VG L + + + Q I ER A+ + Sbjct: 370 IKGRTVGVLNIYSATPNMFGEEEIELLKELQQDISFALERIEKEKFIKLINTAIERGHEW 429 Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRR 476 V D + + + I G + + G R + H ++ ++ + + R Sbjct: 430 VLVTDEEGNILYVNRAVEEISGYSQDELFGRNPRIFKSGYH--TKEFYKNLWRTIKSGR- 486 Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535 Q F R + + ++ I P+ S G LR++ DIT +K E I + Sbjct: 487 -SFQAVFVNRKKNGELFYLDQTITPVRVGSKG--LRFVAFGKDITSEKYLEEEIARLKYT 543 Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D LTG+PNR+ FL + L+ + ++ +IDI + +N+V G AVG+++L + Sbjct: 544 DALTGLPNREGFLTAVKLTLEEAGDREH---AFFLIDILDFSGLNEVYGSAVGNEILRKV 600 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655 + E L DI+ RL G+ F ++ + +A A + + P+ + + I V Sbjct: 601 AHMLREKLFSRDIVGRLGGDEFAVLARGV-SEKDVATIADKLFTLFSSPLEVDGKSIKVN 659 Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713 ++G + + +L+ A A+ AK G N F R + ++ +L Sbjct: 660 INVGASLYPKDAKDPEGLLEKASTALSFAKREGENTYRFFSKDINRVVQEHFRLRANLEK 719 Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773 A++ + PI RL + E+VG E L++ P+ S +EF+ + E+ +I+ + Sbjct: 720 ALKEDRFLFYFQPIYRLPNMEVVGCETLLRLRGPRGKIQSPAEFIFVLEKTGLIRDVEDR 779 Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833 MLE++ I + + N++ K D E ++ + S + L + Sbjct: 780 MLEKLKEFI-----LRHDKKFMVTFNVSPKSFRDETFVEKVKEVAKSVG---SSMVLEIT 831 Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891 E + + NP+ + L +R G+ + +DDFGT S L+YL +P D +K + + Sbjct: 832 ERLFVENPDYAMEFLEDIRSSGVRVAIDDFGTGYSSLAYLETLPVDILKIDMKFVHRMVE 891 Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951 + K +A++ +I+ +A+ + IA+ + E ++ L +GC Y+Q +++ P+ I K Sbjct: 892 SSKSLAVVETIVELARKLGMETIAEGVESEEQLRLLKLLGCTYVQGYYLSKPMSEKQIDK 951 Query: 952 LL 953 +L Sbjct: 952 VL 953 Score = 74.2 bits (181), Expect = 1e-10, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 1/99 (1%) Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488 + + G + + WL +H +DRD L +R R Sbjct: 32 FLNSWVEKLTGWSLKEIKSNTNWWLENVHPDDRDRVTIECRELSEG-NDVLTRSYRFRKK 90 Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527 D + +++ + + N ++ +G+ DI+ Q++ E Sbjct: 91 DGSYIYLLETVSLIECMNEREIKVLGVWEDISLQREYYE 129 Score = 56.5 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 5/110 (4%) Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYE 482 V + I G + G + + R+ + ++ + + R+ E Sbjct: 146 QEGVVYANKAASEIFGYPREDLIGKEVH--ELVAPEYREIVKNVVSRRLKGEQFDRIYSE 203 Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 + + R + G ++ I DIT+QKK Sbjct: 204 LPILRKNGTVGITYTFTRTIYWK-GKPAGFV-IFIDITKQKKFERLFRVL 251 >gi|254503180|ref|ZP_05115331.1| hypothetical protein SADFL11_3219 [Labrenzia alexandrii DFL-11] gi|222439251|gb|EEE45930.1| hypothetical protein SADFL11_3219 [Labrenzia alexandrii DFL-11] Length = 728 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 136/572 (23%), Positives = 249/572 (43%), Gaps = 19/572 (3%) Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456 ++ + ER + A+ G+ VW+WD+ + + LG + ++ + Sbjct: 161 TRALKLSEERYAFAISGASQGVWEWDLNDEHNYLSEQWKLRLGYTEDDLPNAPGLFIKIV 220 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H DR N + + R R+ + W+ R + N+ + G Sbjct: 221 HPEDRANVELAFQAHLK-DRAPFDVSLRLLHKSGEQIWVRARGHAVWNNENRATKMGGTI 279 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 +DITE +K L+ A +D LTG+ NR F+ R+ L ++ + V +ID+D + Sbjct: 280 SDITEYRKLLDRAQYYAERDQLTGLYNRHYFM-RIAGDLLHKSSPNCRSCGVAIIDLDDF 338 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K+IND G GD L+ L R+ E + I+ RL G+ F ++ + + + + Sbjct: 339 KEINDCHGHPAGDSALIVLAERLVEYIGDTGIVIRLGGDEFAVVFSTHLSWEETVQYFKR 398 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + ++ PI +AS+G A T + +++L+ A+LA+Y AK GGN V F Sbjct: 399 LLEEVSKPIAWEGFLFECSASLGLAKKTQAIGSDVNDLLQQADLAVYDAKAAGGNAVRCF 458 Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + S +R I A+ L + P L +++ G EAL++ + + Sbjct: 459 SEALLSTAVNRTKILSSARRALTEERFLLCFQPKADLQSQKLAGFEALLRLSNEDGTLVP 518 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL----DNE 809 S + + E+ + I + R SW + I N++ + L D + Sbjct: 519 PSSYSEVFEDSVLACRIGEMVRLRAIDQASSWLKAGHDFG-HIAFNMSPPEFLAYQRDAQ 577 Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCS 868 + + IS PS I + +E V++ E +L RLR+ GI++ LDDFGT + Sbjct: 578 FVDRLIEAISNAGLKPSHIHVEVTEDVLLTRKRENVSSILRRLRENGITVALDDFGTGHA 637 Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926 L +L FD VK + S + ++ +AI+ +I +A + I+A+ I + + Sbjct: 638 SLLHLKETEFDLVKLDVSFVRSMLTSDVDMAIVETITKLAAKLGKQIVAEGIETQEQLAA 697 Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958 L +G + Q + P+ +++ FP Sbjct: 698 LQGLGVAFGQGYLIGHPVPGDAV------HFP 723 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 12/155 (7%) Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSM 445 + ++ Y Q + GE +G W+WD + D+ + +A + G+ Sbjct: 1 MDKKVSKVYPVQTLRRPGELFEEVEALAGIGYWEWDEIGDKCTYCSEQLARMHGVTVEEF 60 Query: 446 HGPI---RNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501 L ++H +DR+++R L + + ++ E+R+ ++ R Sbjct: 61 MRRATSMDADLEWVHPDDREHYRTQTLR--LSQTKSIVELEYRIIQTGGGEIFVRERGVA 118 Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536 + +++G LR G DIT K + A +D Sbjct: 119 VVDADGTHLRSYGFILDITCLKTAE-----LALRD 148 >gi|300868898|ref|ZP_07113504.1| putative Cyclic diguanylate phosphodiesterase (EAL) domain protein [Oscillatoria sp. PCC 6506] gi|300333115|emb|CBN58696.1| putative Cyclic diguanylate phosphodiesterase (EAL) domain protein [Oscillatoria sp. PCC 6506] Length = 557 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 138/534 (25%), Positives = 247/534 (46%), Gaps = 24/534 (4%) Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY--EFRVRAADNQFH 493 +LG + ++ + +D ++D + + + E R R Q Sbjct: 24 KVLGYSISAIVFSGEEAIQA--ADDMQPDLVLMDIHLQGKMDGITAAEEIRSRF---QIP 78 Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA--------FQDNLTGIPNRQ 545 + + + + R K E L +A D LT +PNR Sbjct: 79 VVYLTA---YADDNTLQRVNATKPFGYVVKPFEEKNLHSAIQIALHRHQYDYLTNLPNRS 135 Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605 +RL IL+ L P ++ + +D+ KIN LG ++GD VL +++R+ Sbjct: 136 LLRERLNQILEKQKAFQTLIP-IVSLSVDRINKINGTLGHSIGDSVLRIISQRLTNCNPN 194 Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665 +++ARL F II+ + A + I+ PI + E+ VTASIG A + Sbjct: 195 FNMVARLEAAEFAIIMPLIEEKEDTGNVAQTILDMISDPIVVDGYEVYVTASIGIAFYPG 254 Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLV 723 E+LKNA AMY+A+ +GGN + + S I ++ L A++ SE + Sbjct: 255 DGTKGDELLKNAYAAMYYAQQQGGNSYQFYTSKSSIVSINQIIQETSLRNALKCSEFEVY 314 Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783 Y P + L +IVG EAL++W+HP+ G + EF+ +AEE+ +I + ++L+ + Sbjct: 315 YQPQVELKTGKIVGAEALLRWNHPERGLVYPDEFIALAEEMGLIIPLGEWVLQTACKQTK 374 Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843 W++ + P+ I +N++ + + E ++ ++ +T P ++L +ES+V+ N Sbjct: 375 IWQES-DFSPLRIAVNLSGRQFNQKNIAERVRQILKETGLDPKYLELEVTESLVIQNESA 433 Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901 + + R +GI + +DDFGT S LSY PFD +K + S + K AI ++ Sbjct: 434 ATKAMTEWRTLGIKIAVDDFGTGYSSLSYPKRFPFDIIKIDRSFICNITNDPKNAAITKA 493 Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 II MA ++ +IA+ + + ++ L + CD +Q + L +LLK+ Sbjct: 494 IIQMAHSLNMKVIAEGVETQAELDFLYQYECDEMQGYFFSKALTNKEFEELLKK 547 >gi|163853430|ref|YP_001641473.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|163665035|gb|ABY32402.1| diguanylate cyclase [Methylobacterium extorquens PA1] Length = 561 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 120/474 (25%), Positives = 214/474 (45%), Gaps = 27/474 (5%) Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542 RVR + + P+ + D+TEQ A Q+ LTG+ Sbjct: 83 IRVRLTLGGDRRVEAALAPL-----SAGGFALTFEDVTEQ----LRGAALARQEPLTGLC 133 Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602 NR DRL L +A V+++D+D++K +ND LG VGD +L + R+ Sbjct: 134 NRVGLHDRLDAALTEAART-GAPLAVLMLDLDRFKTVNDTLGHPVGDALLRKVAERLRRA 192 Query: 603 LKFPDILARLSGNRFGIILIS--------ENNSLKIADFAIAMRKSIAMPINLLEREITV 654 + D++ARL G+ F I+ + A + + + + V Sbjct: 193 TRSGDLVARLGGDEFAILQVDPQVGPHAGVEQPHAAEALARRLVDLVGRTYVVDGHMLNV 252 Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712 S+G A + + ++LK+A+LA+Y AK G F + + ++ DL Sbjct: 253 GVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPAMNAQMQARRGLEIDLR 312 Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772 A+ + L + P I+L ++ G EAL++W+HP+ G +S + F+ +AEE+ +I I Sbjct: 313 RAMALKQFDLAFQPQIQLESGDVTGFEALLRWNHPERGPVSPALFIPLAEEIGVIVGIGE 372 Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832 ++L R+ W P I +N++ L E + ++++T P+R++L Sbjct: 373 WVLRTACREAARWP-----HPASIAVNLSPVQFRGGRLVETVTNVLAQTGLDPARLELEI 427 Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892 +E ++ N + +L LR +G+ +++DDFGT S LSYL PFD +K + S + G Sbjct: 428 TEGALLENTDSVLDVLNGLRALGVKISMDDFGTGYSSLSYLQKFPFDKIKIDQSFVRGME 487 Query: 893 EKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944 AI+R+I + ++ A+ + + + GC +Q P+ Sbjct: 488 GNAECGAIVRAIARLGASLGMRTTAEGVETATQLDAIRAEGCTEVQGYLTGRPM 541 >gi|113969374|ref|YP_733167.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4] gi|114046601|ref|YP_737151.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7] gi|113884058|gb|ABI38110.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4] gi|113888043|gb|ABI42094.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7] Length = 684 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 122/431 (28%), Positives = 214/431 (49%), Gaps = 6/431 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + A +D LTG+PNR L+ + + S +M ID+D++K IND L Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVH-KSSFALMFIDLDRFKNINDSL 298 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G A+GD L + R + ++ ++RL G+ F I+ S ++ + ADF + + + Sbjct: 299 GHALGDQFLARIARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDKLLVQLNV 358 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703 PI L E I ASIG + + ++ +++++A++AMY AK G N F+ Sbjct: 359 PIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418 Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 V + + L A++N+E L + P + L +I G EALI+W IS F+ +A Sbjct: 419 AVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITGCEALIRWQ-KDGRLISPISFIPVA 477 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 EE +I I +++E+ R + W+ + I I IN+AS+ D L ++ + + Sbjct: 478 EETGIIIPIGRWVIEQSCRVLREWQKKY-NFAIPIAINVASQQFADASLVSDIKQMALRY 536 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 P +++ +E+ +M + E + L +L+ G + +DDFGT S LSYL ++P T+ Sbjct: 537 QIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 596 Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941 K + ++ + AI +I+ + K + TI+A+ I E + L R C Q + + Sbjct: 597 KIDRCFVSDL-PEDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKRNQCQIGQGFYFS 655 Query: 942 SPLGFNSILKL 952 PL L Sbjct: 656 QPLPQAEFEAL 666 >gi|168334591|ref|ZP_02692744.1| hypothetical protein Epulo_06318 [Epulopiscium sp. 'N.t. morphotype B'] Length = 696 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 106/496 (21%), Positives = 225/496 (45%), Gaps = 11/496 (2%) Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528 + + + E R + W+ + ++ +N D++ + DI E+K S E Sbjct: 208 EEALKTNKFEYSMEIRYNHSVRGNIWIYLMVKYFRPANSDLMNILVTMVDINEEKNSEEQ 267 Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588 + D +TG PN+ F+ + + + +D D +K IND G A G Sbjct: 268 SMSL-LYDPVTGSPNKNFFIRYFNE-------HKDTKLAFIYLDADNFKSINDSFGRAFG 319 Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648 D VL + +R+ + I+ R + F I++ + +I DF + + + P Sbjct: 320 DAVLNEIIKRVNGIKHDKFIIGRCFADEFLIVIEDFEDENEINDFMMVLSQIFDEPFTNS 379 Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706 V+ S G + + ++L NA++AM+ K G + + S ++ +++ Sbjct: 380 GVSFGVSYSAGISVYPKDGKNFEDILNNADIAMHRVKAEGKRNFVFYNPSFKQTVLEKMY 439 Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766 ++ DL ++N+E L Y P + ++ ++ G EALI+W P I +F+ AEE + Sbjct: 440 MESDLREGIKNNEFSLYYQPQVDMLTNKVRGFEALIRWLKPDGRIIPPFKFITSAEETGL 499 Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826 + + +++E + I RD + + +NI++ + ++ ++ +T + Sbjct: 500 MIPMGAWIIEEACKFINKLRDA-GYENVHVAVNISAVQITQKSFVPELREIVERTKVNTK 558 Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886 ++ + +E+++M + + + + +L+ +GI + LDDFGT S L+YL +P D +K S Sbjct: 559 QLHIEITETILMKDIKTNTAKIRKLQDMGIIIALDDFGTGYSSLTYLKQLPIDVLKIEKS 618 Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946 + R ++ II + ++ ++A+ + + L CD +Q V+ P+ Sbjct: 619 FVDDIGTGRKNLVGPIINLGHELDLEVVAEGVEEREQLDYLLSYNCDILQGYIVSKPMPE 678 Query: 947 NSILKLLKERFPLVKN 962 + ++ L+ + K Sbjct: 679 DEVMAFLESEYAPEKT 694 >gi|71734809|ref|YP_274835.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555362|gb|AAZ34573.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 711 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 108/432 (25%), Positives = 207/432 (47%), Gaps = 7/432 (1%) Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583 ++ + + A DNLTG+PNR DR+ + + +M +D+D +K +ND Sbjct: 243 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 301 Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643 G GD +L + R+ L D LAR+ G+ F +L+ ++ A I Sbjct: 302 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 360 Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701 P + E ++ ++ SIG + + T E+L NA+ AMYH K G N F ++S Sbjct: 361 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 420 Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761 +++ + +DL A+++ + + Y P + +G EAL++W+HP+ G + +F+ +A Sbjct: 421 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 480 Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821 E+ +I I ++L+ R + W Q I +N+++ L + +++ Sbjct: 481 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 539 Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881 + + L +E+ M + + S +L RL ++G+ L++DDFGT S L YL +P + + Sbjct: 540 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 599 Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939 K + + AI+ +I+ + + + I+A+ + + + LT +GC +Q Sbjct: 600 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 659 Query: 940 VASPLGFNSILK 951 + PL + Sbjct: 660 LGYPLPAEQFSR 671 >gi|307725816|ref|YP_003909029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1003] gi|307586341|gb|ADN59738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Burkholderia sp. CCGE1003] Length = 667 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 250/542 (46%), Gaps = 11/542 (2%) Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481 D + G+ ++ G W ++ D + F R + Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIVGRN-VWALFMSSEDGAASSQNITGFF-NRGVSYEV 186 Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541 E RV+ + ++ S S D I DITE++ + E + A D+LTG+ Sbjct: 187 ERRVKTLQGERLFLFRNKFVQSGSGVDEQYLICSGTDITEERLAQERLTQLANTDSLTGL 246 Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601 NR + D++ + ++ +A V+ +D+D +KK+ND G GD ++ ++ IG Sbjct: 247 ANRNAIQDKIRSAIEEAA--PGESVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSAAIGA 304 Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661 L D LARL G+ F I+L ++ + ++ A + + + P +L E+ SIG A Sbjct: 305 CLNEGDTLARLGGDEF-IVLAAKGTAQELEATAQRILERMRTPFSLGLVEVYTGCSIGIA 363 Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719 + ++++A+ AMY AK G F R + + + +L +E + Sbjct: 364 RYPEHGDNLESLIRSADTAMYVAKDAGKRTHRVFSPEMNRKVAEYMWLDTNLRRGLEEGQ 423 Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779 L L Y P + L + G+EAL++W+ P+ G I EF+ AEE +I + ++++ Sbjct: 424 LTLHYQPKLLLSTGAVQGVEALVRWNSPERGQIMPVEFIRYAEESGLIGVLGRWVMQT-- 481 Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839 + + +A+ + I IN++++ L+D + +++ P + + +ES ++ Sbjct: 482 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFTEALAEARLDPCLVDVELTESCLIE 541 Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IA 897 + + L+ + R+IG + LDDFGT S LS LG IP D +K + S + A Sbjct: 542 DEAAAIDLIKQFRQIGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINTDSKAQA 601 Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957 ++RS++ +A+ + ++A+ I E + + + +Y+Q A P+ + L++R Sbjct: 602 LVRSMVVVAQELGFKVVAEGIETESEEAFMKGLDVEYVQGYLYAHPMPAADFERWLQDRQ 661 Query: 958 PL 959 L Sbjct: 662 KL 663 >gi|52841748|ref|YP_095547.1| sensory box protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628859|gb|AAU27600.1| sensory box protein/GGDEF domain/EAL domain [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 849 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 154/803 (19%), Positives = 334/803 (41%), Gaps = 55/803 (6%) Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252 I+ A I ++ A+ +I + ++ + Sbjct: 61 AIVYNTALCFIILSFSIFLFLNC---YYKSAITLSTTVFILSGLALTQHVFSINLQIDEV 117 Query: 253 W-------------RACSEIALSSSLIIFLFMYLHWNRW---HAKVGYITFSGIACIAIL 296 + R S A LI + ++ + + + + C+A+L Sbjct: 118 FFHHYQSIENAYPGRMASNTAFCFLLITTALVLMNIRGYQSFNNSLAGALGLLVFCLALL 177 Query: 297 FCMSFYYPMVTASIA------RITLASIVLYYTYFIIYHGMKGY-------ERAVLLIPA 343 F ++ + A I L + ++ A+ + A Sbjct: 178 FISGYFSDIQQAYKWGNKTPMSINTGIGFLLLSLAVMGLYWHNNTLYQLNSGIAMPYLSA 237 Query: 344 WILIFIWFIGLWMAIT----KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399 + ++F + + + L ++ L G V IL G + LA Sbjct: 238 FCIMFTFSLLSFEIFKKEKELNLSTNLSISTLALG-VFFSILFGLIIRLWQLAKISAVTA 296 Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI--- 456 ++ E + + D + D + + S+ + + I Sbjct: 297 KYALSE-IKATLESTADGILVVDRAGKVMNYNKRFLNMWYQEERSLKTINYHDIKLIINK 355 Query: 457 -HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515 IN R+ + ++ + + +E + + + ++ +P+ + +I+ + Sbjct: 356 QLINRRETIQR-INKILKNPNYQHAFELKFK---GEIYYDCYT-QPLKLDD-EIIGRVWS 409 Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575 DIT K+ + + D LT +PN+ ++ L + + + + V ++D+D+ Sbjct: 410 FRDITIPKRLEIELSHQSTHDMLTNLPNKVLAINMLGYAMKTAVSSKKI-VGVYLLDLDR 468 Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635 + +INDV G + GD+++ ++++R+ + + +L RLSG++F I++ S NNS ++ Sbjct: 469 FTQINDVFGHSKGDEIIKAISKRLIDCVPMNHMLGRLSGDQF-IVIASINNSKEVVTGVT 527 Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 + + P+ + I ++ S+G + + T +L A++A+ K G N + + Sbjct: 528 RLLSAFHEPVKMNGHSIKMSCSVGISFYPKDGNTVDTLLSKADIALSRTKVEGRNSFQFY 587 Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 ++++ +L AV +E L Y PI++L ++G EALI+W+HP+ G I Sbjct: 588 TQEMHSYTLEHILLESELKNAVAKNEFVLYYQPILKLSSLNVIGFEALIRWNHPRNGLIL 647 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +F+ +AEE+ +I I ++ + + I +W+ Q I I INI+ K + + Sbjct: 648 PDKFIPLAEEIGIIGEIGDWVFVTVCKQIQAWQLQ-GFKNIKISINISPKQFKFQYIPKR 706 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 + L+S+ I+L +E++++ L +L+++GI +++DDFGT S LSYL Sbjct: 707 INELLSEFQVKSESIELELTENILIDKSTDIIDTLSKLKEMGIQISIDDFGTGYSCLSYL 766 Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931 +P D +K + + + + ++++II MAK ++IA+ I + ++ L ++G Sbjct: 767 KDLPIDILKIDQTFVKDLKNNQSNQTLIKAIIAMAKKFNLSLIAEGIENQYQLEFLKKLG 826 Query: 932 CDYIQDSHVASPLGFNSILKLLK 954 C Y Q + + P ++ L+ Sbjct: 827 CHYGQGYYFSHPKPTEKCMQFLQ 849 >gi|313498481|gb|ADR59847.1| Uncharacterized signaling protein PA1727 [Pseudomonas putida BIRD-1] Length = 695 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 113/438 (25%), Positives = 211/438 (48%), Gaps = 7/438 (1%) Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + + + A D LT +PNR DR+ + A +M ID+D +K +ND G Sbjct: 255 ANQELTQLALHDTLTDLPNRTLLADRIEQAIAKVAEQGGC-FALMFIDLDGFKPVNDAFG 313 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 +GD +L ++ R+ L D LAR+ G+ F +L+ D A+ ++ P Sbjct: 314 HHIGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVELQEPNDAMDVAVKQVNLVSRP 372 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702 + E ++ ++AS+G + + E+L+NA+ AMYHAK G N F ++S Sbjct: 373 FRVAEHDLQLSASLGIVLYPGNGQDQHELLRNADAAMYHAKSAGKNGYSFFDVSMNSNAR 432 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 ++ + +DL +A+E + L Y P + +G EAL++W+HP+ G + F+ +AE Sbjct: 433 QQLQLLQDLRVALEQRQFRLHYQPKFDAQACQPIGAEALLRWEHPQQGLLLPDRFIGLAE 492 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + +I I ++L R + W DQ + + +N+++ L + + + + Sbjct: 493 KTGLIIPIGEWVLTEACRQMRQWLDQGHH-GWRMAVNLSAIQFCHAGLVDSVARALQQNG 551 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 + + L +E+ M + + S +L RL +G+ L++DDFGT S L YL +P + +K Sbjct: 552 LPANCLTLEITETTAMHDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 611 Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + AI+ +I+ + + + I+A+ + + LTR+GCD +Q + Sbjct: 612 IDRGFVRDLEQDSDDAAIVSAIVALGQALGLRIVAEGVETDKQQDFLTRLGCDSLQGYLL 671 Query: 941 ASPLGFNSILKLLKERFP 958 P+ + L+ P Sbjct: 672 GQPVPAEQFMDKLQAMAP 689 >gi|254372423|ref|ZP_04987913.1| hypothetical protein FTCG_01647 [Francisella tularensis subsp. novicida GA99-3549] gi|151570151|gb|EDN35805.1| hypothetical protein FTCG_01647 [Francisella novicida GA99-3549] Length = 772 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 134/564 (23%), Positives = 248/564 (43%), Gaps = 13/564 (2%) Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YI 456 + I D E V S D V D + + + G G L Sbjct: 214 EKIDKDKEIADYIVNNSDDSVMVTDQYLNIIYVNKAFEVVTGYTKTEALGNTPAMLSSRK 273 Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516 H D+ + + G + E R + + +I + N ++ Y+ + Sbjct: 274 H--DKYFYERMWTKLKSQ--GAWEGEIWNRRKSGELYLTWAKILTVK-KNSQVIYYVSVE 328 Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576 DI++++ L+ I A+QD LTG+ NR F ++ ++ A T+M +D+D++ Sbjct: 329 TDISKRRIRLDEIEKYAYQDMLTGLFNRYYFESHISDHIEKGARQIQ-PFTLMFLDLDRF 387 Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636 K++NDV G GD +L+S++ R+ EL++ D++ARL G+ F + + A Sbjct: 388 KEVNDVYGHQAGDKLLISVSNRLKELVREKDLVARLGGDEFLLFFVDMT-IDNAIKKANK 446 Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696 + + IA P ++ +++ ++ASIG ++ +LK A+ AMY AK G N + Sbjct: 447 VVEYIAKPYDIDDKQFIISASIGVVNYPQDGTDFEHLLKYADAAMYRAKDLGRNRFFLYN 506 Query: 697 VS--SFRSDRVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753 + IK+ L A EN + +++ P L +I G+E L + +HP G + Sbjct: 507 QEISDKVCYDLKIKQALNDAFENTDYIQVLFQPQYDLKQRQIYGIEILSRINHPDLGVVC 566 Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813 +F+ I + + + + +L++ + I S D I N+ ++ + C Sbjct: 567 PKDFIPILQSINQMPRFDKIVLQKACQQISS-NDMMLEQNFRISQNVTVPVIMSEQYCRE 625 Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873 +I + SP R E++ + + + + L+K GIS+ +DDFG+ S LSYL Sbjct: 626 FIDIIKQYKISPQRFSFEVIENIAIDDYKTACKNFCLLKKEGISVEIDDFGSGYSSLSYL 685 Query: 874 GYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932 P +K + + + I R+II +A+++ +IA+ + + L +MGC Sbjct: 686 AQFPITVLKIDSFFVQNIHHPREEKICRAIISLAESLNLKVIAEGVETKHQADTLYKMGC 745 Query: 933 DYIQDSHVASPLGFNSILKLLKER 956 Q + PL + +L K Sbjct: 746 YLHQGFLYSQPLSYEELLLKFKNH 769 >gi|94313385|ref|YP_586594.1| diguanylate cyclase/phosphodiesterase [Cupriavidus metallidurans CH34] gi|93357237|gb|ABF11325.1| diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) [Cupriavidus metallidurans CH34] Length = 709 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 112/432 (25%), Positives = 202/432 (46%), Gaps = 7/432 (1%) Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584 + E + A D LT +PNR DR T + +A R V+ +D+D +K +ND G Sbjct: 274 ANEELEFLALHDKLTHLPNRVLLEDRFTLAIQAAARHHG-RFAVLFVDLDGFKGVNDTYG 332 Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644 VGD +LV + R+ + D +AR+ G+ F +L+ + A + + P Sbjct: 333 HQVGDGLLVEIANRLRASVSSEDTIARVGGDEFV-LLVHVDEPEDAGVVAGKLIDVLREP 391 Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702 N+ + V+ SIG A + ++ NA+ AMYHAK G N F ++ Sbjct: 392 ANVAGHMVHVSGSIGIAIYPVDGQDQDALMTNADAAMYHAKASGRNASYFFERSMNHQAR 451 Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762 + M+ +DL A+ N +L L Y P D +VG EAL++W+HP G + +F+ +AE Sbjct: 452 AQQMLIQDLRAALRNGQLQLHYQPKFSAADNVLVGAEALLRWNHPVQGLLMPDQFITLAE 511 Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822 + I I ++L R + W D + +N+++ + E + +++ Sbjct: 512 KTGAIVPIGTWVLNEACRQLALWHDM-GHAHWSMAVNLSALQFCHAGMVESVAEALARHK 570 Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882 P R+ L +E+ M + E + ++ +L ++G+ + +DDFGT S L +L IP +K Sbjct: 571 VEPRRLTLEITETTAMRDVETTLAIMTQLDEMGVRIAIDDFGTGYSSLLHLKRIPASELK 630 Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940 + + E AI+ +I+ + + + ++A+ + L +GCD +Q + Sbjct: 631 IDRGFVRDLAEDSEDAAIVSAIVALGRTLNLQVVAEGVETTAQRSFLAGLGCDALQGYLL 690 Query: 941 ASPLGFNSILKL 952 P+ +L Sbjct: 691 GRPMPAAQFTEL 702 >gi|209525668|ref|ZP_03274205.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209493837|gb|EDZ94155.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 592 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 125/440 (28%), Positives = 231/440 (52%), Gaps = 5/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 + + + +L A D LT +PNR F+D+++ ++ +N V+ +D D++K +N Sbjct: 149 QLQIANYKLLEMALHDPLTKLPNRALFMDKISLVIKSVKEGNNHGFAVLFMDCDRFKVVN 208 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640 D LG VGD++L+++ RI ++LK D+L+RL G+ F II+ N + + A ++ + Sbjct: 209 DSLGHTVGDELLIAIGDRIQKILKNNDLLSRLGGDEFAIIVHDVNEIEPVRNLADSILEV 268 Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698 ++ P + REI + SIG S+ +L++A+ AMY AK G F + Sbjct: 269 MSCPFQIYSREIFINMSIGVVLSNSNYEQPEHLLRDADTAMYRAKALGRGQYHIFDPAMH 328 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 D + ++ DL A+EN EL Y PII L +I +EAL++W HP+ G + F+ Sbjct: 329 KEALDLLGLETDLRRAIENQELIPYYQPIINLETGKISSMEALVRWQHPQRGLVPPGMFI 388 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817 +AEE+ +I I ML + +W++Q + + +N++ + +L + + Sbjct: 389 PLAEEMGIITTIGTLMLVEACHQLKNWQEQKLVDESVSMSVNLSVRQFTQADLIATVDDI 448 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 ++++ +P ++L +ES ++ N + +R +L + R I L+LDDFGT S LSYL P Sbjct: 449 LAESGLNPKCLRLEMTESAIVENTQTARTILTQFRDRHIGLSLDDFGTGYSSLSYLHAFP 508 Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 DT+K + S ++ + + ++ +II ++K + +A+ I + +L + C+ Sbjct: 509 VDTIKIDKSFVSLLDGTPENLGLIPAIIGISKTLNMVAVAEGIETAEQLAQLRELECNSG 568 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + PL + +LL Sbjct: 569 QGYFFSRPLPATQMAELLAS 588 >gi|78060223|ref|YP_366798.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383] gi|77964773|gb|ABB06154.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383] Length = 780 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 139/752 (18%), Positives = 293/752 (38%), Gaps = 48/752 (6%) Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285 L IS + + L + + + + ++ + Sbjct: 41 VSYLILISSTWSLAITHLRSTPWWLSVAIPAAMTLAALARLLHWHR---TRLLEPTPDTV 97 Query: 286 TFSGIACIAILFCMSFYYPMVTASIA---RITLASIVLYYTYFIIYHGMKGYERAVLLIP 342 + ++ ++ + + + V +Y + + Sbjct: 98 MRALTVTNWLVVPVAVTFTTWALLLFPYGDAWQKAQVAFYLAITVIGCIFSLMYLRTAAL 157 Query: 343 AWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400 + +I ++ T + L + A V ++ VI + + + S+ Sbjct: 158 SVAVIVNVAFIVFFISTGQPTLVATAVNMAFVSAALIAVISVNYRGFLRTVDAQAESRMR 217 Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPD-------IATILGLASGSMHGPIRNW 452 R + V D R+ I +L + + G ++ Sbjct: 218 EQAQTRLMRMIDDMPVAVMTADPETFRINYLNATSRNLLRTIEHLLPIRADDALGASIDF 277 Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512 + H + R R + I++ + +++G + Sbjct: 278 F-HPHPQHQRRLLA----------DPANLPHRARIGLGPEV-LDIQVSAVRDADGRYIGP 325 Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572 + + +T+Q ++ I A D+LTG+PNR +FL L S + ++ ID Sbjct: 326 MLSWSIVTQQAEAEARIHQLAHHDSLTGLPNRATFLAEFDASLRRS----DKVLGLLFID 381 Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIA 631 +D +K IND G + GD+VL + R+ + + +L R+ G+ F ++L ++ + Sbjct: 382 LDGFKLINDACGHSAGDEVLRQVGERLRGQCPEPGMMLGRIGGDEFAVLLRD-TDADRAM 440 Query: 632 DFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690 A + ++ P +R+ + ASIG +L A++A+Y AK G Sbjct: 441 GAAARLVDTLVAPYAPSPDRQFRIGASIGCVLAPDHGNDGGVLLSRADMALYAAKKAGKG 500 Query: 691 HVESFRVSSF--RSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHP 747 F +RV ++ L +A++ ++ LY+ Y PI+ + +I EAL++W HP Sbjct: 501 TYRMFSPDMETSAQERVALESKLRVALDENQGLYVFYQPIVDVRTRQITTREALLRWHHP 560 Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807 + G IS F+ +AE +I + F+LE+ R+ W D + +N+++ L Sbjct: 561 RAGWISPGRFIPVAERGGLIDRLGRFVLEQACREAARWPD-----GARVAVNVSAGQLGH 615 Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867 + A ++ +P R+++ +E+ ++ + ++ L LR +G+ + LDDFGT Sbjct: 616 GTIVPTFAAALAGAGLTPDRLEIEVTETALLHDEGKAIADLRALRSMGVRVALDDFGTGF 675 Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925 S L++L PFD +K +GS + + A++R++ + K + T +A+ + E + Sbjct: 676 SSLAHLRAFPFDKIKIDGSFVRDAVTRPDCAAVVRAVADLGKRLGVTTVAEGVETEEQLA 735 Query: 926 ELTRMGCDYIQDSHVASPLGFNS---ILKLLK 954 +T GC +Q + P ++ ++ Sbjct: 736 CITDAGCREVQGFLIGRPAPGEQDAPAIRWIE 767 >gi|241203649|ref|YP_002974745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857539|gb|ACS55206.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 781 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 136/440 (30%), Positives = 235/440 (53%), Gaps = 6/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+K+ + I A D+LTG+PNR +RL +ILD + ++ + TV ID+D +K IN Sbjct: 342 ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLASILDQARRNNR-KVTVAYIDLDNFKDIN 400 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639 D G A GD+VL + R+ ++ D++ RL G+ F ++L+ +++ I ++K Sbjct: 401 DGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQSSHDAGITRRLRELQK 460 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVS 698 +I PI + EIT+T+SIG A++ TS E+L NA+ AMY AK G N S Sbjct: 461 AINRPIRGADGEITITSSIGVAAFPFDGATSEELLANADRAMYRAKELGRNTLQHHEGGS 520 Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758 + + E+L A+ +L+L Y P + + I GLEAL++W+HP G + F+ Sbjct: 521 TPVGMPLGEHEELHQAITGDQLFLQYQPQVDVATGRITGLEALVRWNHPAKGRVPPVNFI 580 Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818 +AEE +I + L++L R W+D P+ I +N+++K D + + + Sbjct: 581 PLAEETGLIVPLGLWVLNEACRQARQWQDMGLA-PLTIAVNVSAKQFADPDFATHVAEAL 639 Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878 + ++L +ESVVM N ER+ ++ LR +G+ L++DDFG+ S L+ L PF Sbjct: 640 ERHRLQSRWLELEVTESVVMQNAERALAMMETLRGLGVRLSIDDFGSGYSSLAALKTFPF 699 Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936 D +K + SL+ + AI ++I +A+ ++ +++A+ + + + L + C+ Q Sbjct: 700 DRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSVLAEGVETDAQMDFLRQAHCEEAQ 759 Query: 937 DSHVASPLGFNSILKLLKER 956 + P+ I LL+ R Sbjct: 760 GFRFSKPVSPEEIPALLRAR 779 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 19/177 (10%) Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423 AL IV + + + R V D ++ D Sbjct: 24 RWESTDALTAETRRIVAATEAMMASTAHHLSEGIENL-----RLKEIVHELPDFLYVKDR 78 Query: 424 VRDRVTTTPDIATILGLASGSMHG-----PIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478 V A+ LGL S ++ + ++ +H D + + R Sbjct: 79 DSRFVFANTVTASSLGLESAALITGKRDFDLFDFETALHHFDIE------QQIMTTGEAR 132 Query: 479 LQYEFRVRAADNQFHWMII--RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533 + E + P+ N G+I+ IG++ DITE+K+ + A Sbjct: 133 IDMEESYVFP-GSRRPICRLTSKIPLRNDRGEIVGLIGVSRDITERKRQEDLHRGQA 188 >gi|77919908|ref|YP_357723.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380] gi|77545991|gb|ABA89553.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM 2380] Length = 874 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 145/632 (22%), Positives = 277/632 (43%), Gaps = 20/632 (3%) Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394 RA +L + IG ++ L+++ ++ G ++ Sbjct: 238 IRARVLFRDIFGVPAAVIGTNLSRDIYAQGLQSIIYFHIWLLVVSLMAGVCILVIWDRLA 297 Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454 Q S D + + V +LG + +W Sbjct: 298 GSRQRQRDSEHLFQHLFQFSADAFFLCEEQGRFVDVNHQSCAVLGFDRQKLL--SLSWSD 355 Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514 D + + + E + + + + + +L ++ Sbjct: 356 I---TDAAIGNLLSRTQRLSTAAPVPMEATFTGNRGRTFVGDVSVTHLEIQD-QVLFFV- 410 Query: 515 IANDITEQKKSL-------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567 + DITE+K + + A+ D LTG+PNR ++ L T + + D Sbjct: 411 LVRDITERKAADTMLRKQKARLNYLAYHDVLTGLPNRLKAIELLQTYIGRANQRD-TMVA 469 Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627 V++ D+D++K +N+ LG GD++L+ + RRI E+L+ D++AR G+ F ++L +S Sbjct: 470 VLIFDLDRFKNLNESLGHETGDEILMEVARRIQEMLRDTDVVARFGGDEFLVLLEHVADS 529 Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687 + A + ++IA P+ + E++ +T SIG + + + +LK A+ AMY AK + Sbjct: 530 TGVKHVAEKLLEAIAQPLRIGEQQFYLTGSIGISLYPKHGENAQTILKAADSAMYFAKEQ 589 Query: 688 GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745 G N F + +R+ ++ DL A+ + L Y P L ++ LE L++W Sbjct: 590 GRNTYRFFIPSINVEVEERLYLETDLRQALNLEQFMLFYQPEFNLHTGKVECLETLLRWQ 649 Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805 HPK G + EF+ +AE+ +I I ++L+ R +I+WR+Q P I + +NI+++ Sbjct: 650 HPKRGIVGPGEFIPLAEDTGLIVPIGEWVLQEACRQVIAWREQGL-PSIRVAVNISARQF 708 Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865 + E + ++ + + ++L +ES V+ + E + + LR+ GISL +DDFG Sbjct: 709 RQSGFIEMVFRVLKQYGLAAEWLELEITESFVIQSAEHALNMFKVLRQSGISLAVDDFGQ 768 Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923 S LSYL PF +K + + + + AI +II M ++ ++A+ I Sbjct: 769 GYSSLSYLRKFPFTKLKMDRAFVKNVVNDPHDEAIAAAIIAMGDSLGQEVVAEGIETREQ 828 Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955 + L +GC Q ++A P+ + + L+ Sbjct: 829 LDTLRTLGCPCGQGYYLALPMEGPKMAEFLQR 860 >gi|330899691|gb|EGH31110.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 972 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 125/440 (28%), Positives = 233/440 (52%), Gaps = 7/440 (1%) Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580 E+ + + A D+LT +PNR + L I+ + + + +V+ ID+D++K +N Sbjct: 521 ERYDAKNKLTYLAENDSLTRLPNRWFLSNYLREIISRTTSAPDA-VSVIFIDLDRFKAVN 579 Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639 D +G +VGD +L+ RR+ + + ++ARL G+ F I++ S + I A + Sbjct: 580 DTMGHSVGDQLLIQAGRRLRDCIDENSVVARLGGDEFSIVVTHSVYSESLIKSLATQVVD 639 Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699 ++ P NL ++I V+AS+G A++ + +LKNA+ AMYHAK G N+ + + Sbjct: 640 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYDARM 699 Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757 S + + L A+E E L + P + L+D I GLEAL++W+HP+ G IS ++F Sbjct: 700 NESLTRRLQTETLLRGALERDEFILHFQPKVSLVDGRISGLEALLRWNHPEQGMISPADF 759 Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817 + I E+ +I + ++++ ++ + SW + I IN++ + L L E ++ + Sbjct: 760 IPILEDTGLIIPVGVWVIRKVCETLKSWEKNNIRL-VPIAINLSVRQLQVKGLAETVKHI 818 Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877 + SP+ ++ +ES++M +PE + +L ++ GISL++DDFGT S L+YL P Sbjct: 819 VEAYGISPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878 Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935 D +K + + + + AI R++I +A + +IA+ + ++ L GCD + Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQM 938 Query: 936 QDSHVASPLGFNSILKLLKE 955 Q + P+ ++K Sbjct: 939 QGYLFSKPVISEECAAMIKS 958 Score = 54.2 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 75/246 (30%), Gaps = 14/246 (5%) Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354 + +SF + A + + + + + + +I + G+ L L Sbjct: 139 GVMRLSFNAERIAAELYSLVIQATLFAGFFLLISLTLMGFMIKRSLAHLGKLHSYEAEIA 198 Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414 A+ ++ + + + T G + + + + A+ Sbjct: 199 SGAVA---AEAMLVADAPMEIQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEV 255 Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG- 473 IV + T + + + I++ + + Sbjct: 256 S-IVCEMSASGRITYVNERFVTSSQHSRAELLE--------LTIDEVWTGMSSANESWQW 306 Query: 474 -YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532 E R+ + W + P+ + G + +YI I DIT++K+ IL N Sbjct: 307 APENEVWNGEVRLAGRTGKVAWHRRTVIPILDDLGGVEKYI