RPSBLAST alignment for GI: 254780468 and conserved domain: TIGR00229
>gnl|CDD|161776 TIGR00229, sensory_box, PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. Length = 124
Score = 40.7 bits (96), Expect = 0.002
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
RN L I DR+ R ++ + R + E RVR D W+ + + P+ +NG
Sbjct: 46 RNVLELIPEEDREEVRERIERLLEGEREPVSEERRVRRKDGSEIWVEVSVSPIR-TNGGE 104
Query: 510 LRYIGIANDITEQKK 524
L +GI DITE+K+
Sbjct: 105 LGVVGIVRDITERKQ 119