BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] (963 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 1953 bits (5060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 963/963 (100%), Positives = 963/963 (100%) Query: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF Sbjct: 1 MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60 Query: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP Sbjct: 61 QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120 Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF Sbjct: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180 Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS Sbjct: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240 Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS Sbjct: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300 Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK Sbjct: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360 Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD Sbjct: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420 Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ Sbjct: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480 Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG Sbjct: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540 Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG Sbjct: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600 Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF Sbjct: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660 Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL Sbjct: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720 Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR Sbjct: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780 Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN Sbjct: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840 Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR Sbjct: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900 Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV Sbjct: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960 Query: 961 KNT 963 KNT Sbjct: 961 KNT 963 >gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62] Length = 266 Score = 53.9 bits (128), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595 D L+G+ N +F+ L + N + +++ DID +K+IND G VGD V+ L Sbjct: 107 DCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158 Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLER-EIT 653 + ++ + P + RL G F + + + A A +RK I IN+ I Sbjct: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIH 217 Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695 +T S G A + S+ ++ A+ A+Y AK G N V F Sbjct: 218 ITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258 >gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 284 Score = 27.3 bits (59), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 22/121 (18%) Query: 534 FQDNLTGIPNRQSFLDRL------TTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIA 586 F+DN + ++DRL T ++D + + N+R +V + ++ I +GIA Sbjct: 87 FRDN-------KKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIA 139 Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGN---RFGIILISENNSLKIADFAIAMRKSIAM 643 G+ ++ S R I E K P ++ SG + GI+ + + L AI M K + Sbjct: 140 AGEAIVKSCERAIAE--KCPLVMFTASGGARMQEGILSLMQ---LPRTTIAINMLKDAGL 194 Query: 644 P 644 P Sbjct: 195 P 195 >gi|254780848|ref|YP_003065261.1| co-chaperonin GroES [Candidatus Liberibacter asiaticus str. psy62] Length = 111 Score = 25.4 bits (54), Expect = 4.8, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Query: 32 IEPINISSSDRVL-DLTSITRIYVNQGEDFQVFTAADIDGI 71 IEP +S D VL S T I +N GE++ V +DI GI Sbjct: 64 IEP-EVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGI 103 >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 25.0 bits (53), Expect = 6.0, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALI 818 + N+P +FI I KDL DN+LC+G+ I Sbjct: 310 NSENVPGLFIADGI--KDL-DNKLCQGISETI 338 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 25.0 bits (53), Expect = 6.5, Method: Compositional matrix adjust. Identities = 12/23 (52%), Positives = 15/23 (65%) Query: 865 TKCSLLSYLGYIPFDTVKFNGSL 887 TK SL +G IP DT+ FN +L Sbjct: 425 TKESLRQTIGIIPQDTILFNDTL 447 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 24.6 bits (52), Expect = 7.3, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Query: 878 FDT-VKFNGSLMTGSTEKRIAILRSII 903 +DT V NGS ++G ++RIAI R+++ Sbjct: 479 YDTYVGENGSNLSGGQKQRIAIARAML 505 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.141 0.420 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 606,995 Number of Sequences: 1233 Number of extensions: 25733 Number of successful extensions: 88 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 16 length of query: 963 length of database: 328,796 effective HSP length: 83 effective length of query: 880 effective length of database: 226,457 effective search space: 199282160 effective search space used: 199282160 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 43 (21.2 bits)