BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (963 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 963

 Score = 1953 bits (5060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 963/963 (100%), Positives = 963/963 (100%)

Query: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60
           MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF
Sbjct: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60

Query: 61  QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
           QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP
Sbjct: 61  QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120

Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180
           DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF
Sbjct: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS
Sbjct: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240

Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
           KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS
Sbjct: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
           FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK
Sbjct: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD
Sbjct: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ
Sbjct: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG
Sbjct: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG
Sbjct: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF
Sbjct: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
           ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL
Sbjct: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR
Sbjct: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN
Sbjct: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900
           PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR
Sbjct: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV
Sbjct: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960

Query: 961 KNT 963
           KNT
Sbjct: 961 KNT 963


>gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 266

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D L+G+ N  +F+  L +         N + +++  DID +K+IND  G  VGD V+  L
Sbjct: 107 DCLSGLLNHSAFISSLGSY--------NEKLSIVFFDIDYFKQINDNFGHPVGDKVIAFL 158

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLER-EIT 653
           + ++  +   P  + RL G  F    +  +   + A  A  +RK I    IN+     I 
Sbjct: 159 SDQLVVVFGTPMFVGRLGGEEFAAAALGSSEQ-EAAILANDLRKIIENSQINISSGPSIH 217

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           +T S G A     +  S+ ++  A+ A+Y AK  G N V  F
Sbjct: 218 ITISAGIAERCHKEPIST-IIYRADQALYVAKKSGRNRVVCF 258


>gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 284

 Score = 27.3 bits (59), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 22/121 (18%)

Query: 534 FQDNLTGIPNRQSFLDRL------TTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           F+DN       + ++DRL      T ++D + +   N+R   +V  + ++  I   +GIA
Sbjct: 87  FRDN-------KKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIA 139

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGN---RFGIILISENNSLKIADFAIAMRKSIAM 643
            G+ ++ S  R I E  K P ++   SG    + GI+ + +   L     AI M K   +
Sbjct: 140 AGEAIVKSCERAIAE--KCPLVMFTASGGARMQEGILSLMQ---LPRTTIAINMLKDAGL 194

Query: 644 P 644
           P
Sbjct: 195 P 195


>gi|254780848|ref|YP_003065261.1| co-chaperonin GroES [Candidatus Liberibacter asiaticus str. psy62]
          Length = 111

 Score = 25.4 bits (54), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 32  IEPINISSSDRVL-DLTSITRIYVNQGEDFQVFTAADIDGI 71
           IEP  +S  D VL    S T I +N GE++ V   +DI GI
Sbjct: 64  IEP-EVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGI 103


>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 480

 Score = 25.0 bits (53), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALI 818
           +  N+P +FI   I  KDL DN+LC+G+   I
Sbjct: 310 NSENVPGLFIADGI--KDL-DNKLCQGISETI 338


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 25.0 bits (53), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 865 TKCSLLSYLGYIPFDTVKFNGSL 887
           TK SL   +G IP DT+ FN +L
Sbjct: 425 TKESLRQTIGIIPQDTILFNDTL 447


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 24.6 bits (52), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 878 FDT-VKFNGSLMTGSTEKRIAILRSII 903
           +DT V  NGS ++G  ++RIAI R+++
Sbjct: 479 YDTYVGENGSNLSGGQKQRIAIARAML 505


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.141    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 606,995
Number of Sequences: 1233
Number of extensions: 25733
Number of successful extensions: 88
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 16
length of query: 963
length of database: 328,796
effective HSP length: 83
effective length of query: 880
effective length of database: 226,457
effective search space: 199282160
effective search space used: 199282160
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 43 (21.2 bits)