Query         gi|254780469|ref|YP_003064882.1| zinc-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs    121 out of 410
Neff          4.0 
Searched_HMMs 39220
Date          Sun May 29 17:33:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780469.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK00418 zinc-binding protein;  99.9 6.6E-23 1.7E-27  151.7   3.7   54    7-60      3-60  (62)
  2 pfam03884 DUF329 Domain of unk  99.9   2E-22 5.2E-27  149.0   3.7   49    9-57      1-53  (57)
  3 PRK01343 zinc-binding protein;  99.8   1E-21 2.7E-26  144.9   3.7   50    8-57      7-56  (56)
  4 COG3024 Uncharacterized protei  99.8 1.4E-21 3.5E-26  144.2   3.3   49    7-55      4-56  (65)
  5 pfam09889 DUF2116 Uncharacteri  91.1    0.12 3.1E-06   31.3   1.8   24   11-35      4-27  (59)
  6 COG4068 Uncharacterized protei  90.7    0.13 3.3E-06   31.2   1.7   24   11-35      9-32  (64)
  7 pfam10013 DUF2256 Uncharacteri  88.3    0.29 7.5E-06   29.2   2.0   24   11-34      9-40  (42)
  8 COG4338 Uncharacterized protei  80.4    0.33 8.5E-06   28.8  -0.7   29   11-39     13-49  (54)
  9 pfam04640 PLATZ PLATZ transcri  69.2     1.8 4.7E-05   24.6   0.7   30    4-34     43-72  (72)
 10 pfam10071 DUF2310 Zn-ribbon-co  67.7     1.6 4.1E-05   25.0   0.2   35    6-40    217-256 (259)
 11 LOAD_FCS consensus              64.2     2.8   7E-05   23.6   0.8   28    7-34      3-38  (40)
 12 pfam11023 DUF2614 Protein of u  62.2     3.4 8.7E-05   23.1   1.0   17    5-21     64-80  (114)
 13 pfam04945 YHS YHS domain. This  61.2     2.9 7.4E-05   23.5   0.5   22   14-35      1-32  (44)
 14 PRK02935 hypothetical protein;  61.1     3.7 9.4E-05   22.9   1.0   17    5-21     64-80  (117)
 15 TIGR00354 polC DNA polymerase   58.0     2.7 6.8E-05   23.7  -0.1   29   10-38    679-707 (1173)
 16 PRK05776 DNA topoisomerase III  57.1     6.5 0.00017   21.5   1.7   28   10-39    602-629 (675)
 17 TIGR01405 polC_Gram_pos DNA po  55.7     6.2 0.00016   21.7   1.4   39    6-46    738-786 (1264)
 18 COG2260 Predicted Zn-ribbon RN  52.6     7.8  0.0002   21.1   1.5   17    8-24     15-31  (59)
 19 pfam04135 Nop10p Nucleolar RNA  51.6     7.3 0.00019   21.3   1.3   18    7-24     14-31  (53)
 20 KOG0978 consensus               50.7     5.8 0.00015   21.8   0.6   21    6-26    674-695 (698)
 21 PRK05638 threonine synthase; V  50.5     7.5 0.00019   21.2   1.2   24    9-34      1-24  (443)
 22 PRK13130 H/ACA RNA-protein com  50.4     8.7 0.00022   20.8   1.5   17    8-24     15-31  (54)
 23 KOG2879 consensus               47.5     9.8 0.00025   20.5   1.4   22    3-24    232-253 (298)
 24 pfam06467 zf-FCS MYM-type Zinc  41.0     9.9 0.00025   20.5   0.6   28    7-34      3-39  (41)
 25 PRK00415 rps27e 30S ribosomal   40.6      15 0.00038   19.5   1.4   19    2-20      3-21  (59)
 26 PTZ00083 40S ribosomal protein  38.2      16 0.00041   19.3   1.3   20    1-20     26-45  (85)
 27 CHL00174 accD acetyl-CoA carbo  36.4      14 0.00037   19.6   0.8   15    6-20     44-58  (305)
 28 COG2176 PolC DNA polymerase II  35.6      18 0.00047   19.0   1.3   41    4-46    933-981 (1444)
 29 pfam12156 ATPase-cat_bd Putati  35.2      28 0.00071   18.0   2.1   26   11-36      1-36  (88)
 30 smart00746 TRASH metallochaper  34.3      17 0.00043   19.2   0.9   22   13-34      1-33  (39)
 31 pfam04159 NB NB glycoprotein.   33.0      14 0.00036   19.6   0.3   15   10-32     59-73  (100)
 32 pfam04423 Rad50_zn_hook Rad50   32.4      13 0.00033   19.9   0.0   14   11-24     21-34  (54)
 33 COG3350 Uncharacterized conser  32.3      21 0.00054   18.7   1.1   27    9-35      1-38  (53)
 34 cd01057 AAMH_A Aromatic and Al  30.8      28 0.00071   18.0   1.5   38    7-46    377-430 (465)
 35 pfam10122 Mu-like_Com Mu-like   30.7      22 0.00055   18.6   1.0   16    4-19     18-33  (51)
 36 pfam05573 NosL NosL. NosL is o  29.7      29 0.00074   17.9   1.5   27   11-37     17-57  (140)
 37 PHA00732 hypothetical protein   29.4     7.6 0.00019   21.2  -1.6   38   10-49     27-66  (79)
 38 TIGR00538 hemN oxygen-independ  28.7      16  0.0004   19.4  -0.1   11   22-32     55-65  (462)
 39 pfam04570 DUF581 Protein of un  28.3      29 0.00075   17.8   1.3   27    9-35     16-50  (59)
 40 pfam09986 DUF2225 Uncharacteri  27.9      24  0.0006   18.4   0.8   10   10-19     48-57  (214)
 41 pfam02891 zf-MIZ MIZ/SP-RING z  27.2      25 0.00065   18.2   0.8   12   11-22      3-14  (50)
 42 PRK08173 DNA topoisomerase III  26.5      18 0.00047   19.0  -0.0   27    5-32    619-646 (857)
 43 TIGR02300 FYDLN_acid conserved  25.9      26 0.00066   18.1   0.7   45    1-46      1-47  (157)
 44 KOG3362 consensus               25.8      34 0.00086   17.5   1.2   33    3-35    111-147 (156)
 45 KOG4317 consensus               25.0      27 0.00069   18.0   0.6   24    9-32      6-34  (383)
 46 PRK05978 hypothetical protein;  24.2      26 0.00065   18.2   0.4   14    7-20     31-44  (149)
 47 pfam10571 UPF0547 Uncharacteri  24.1      38 0.00097   17.2   1.2   19   11-29      1-21  (26)
 48 PRK07379 coproporphyrinogen II  23.9      19 0.00049   18.9  -0.3   17   23-39     15-31  (399)
 49 PRK08446 coproporphyrinogen II  23.6      21 0.00053   18.7  -0.2   15   24-38      6-20  (351)
 50 PRK05799 coproporphyrinogen II  23.4      19 0.00049   18.9  -0.4   17   24-40      9-25  (374)
 51 pfam01667 Ribosomal_S27e Ribos  23.4      36 0.00093   17.3   1.0   16    5-20      2-17  (55)
 52 smart00734 ZnF_Rad18 Rad18-lik  23.0      19 0.00048   18.9  -0.5   11   10-20      1-11  (26)
 53 cd00729 rubredoxin_SM Rubredox  22.5      35 0.00089   17.4   0.8   10   11-20     19-28  (34)
 54 PRK05628 coproporphyrinogen II  22.3      23 0.00058   18.5  -0.2   17   24-40      8-24  (376)
 55 PRK06294 coproporphyrinogen II  21.9      22 0.00057   18.5  -0.3   17   23-39     11-27  (374)
 56 PRK08208 coproporphyrinogen II  21.5      23 0.00057   18.5  -0.3   16   24-39     51-66  (436)
 57 pfam12230 PRP21_like_P Pre-mRN  21.3      48  0.0012   16.6   1.3   13    8-20    160-172 (223)
 58 cd00350 rubredoxin_like Rubred  20.9      39   0.001   17.1   0.8   10   11-20     18-27  (33)
 59 KOG0801 consensus               20.9      36 0.00092   17.3   0.6   10   11-20    139-148 (205)
 60 PRK09057 coproporphyrinogen II  20.7      24 0.00062   18.3  -0.3   16   24-39     10-25  (381)
 61 PRK06582 coproporphyrinogen II  20.7      25 0.00063   18.3  -0.3   17   23-39     16-32  (390)
 62 PRK13347 coproporphyrinogen II  20.5      27 0.00068   18.1  -0.2   20   23-42     55-74  (453)
 63 pfam06827 zf-FPG_IleRS Zinc fi  20.0      40   0.001   17.1   0.7   25   11-35      2-30  (30)

No 1  
>PRK00418 zinc-binding protein; Reviewed
Probab=99.87  E-value=6.6e-23  Score=151.73  Aligned_cols=54  Identities=31%  Similarity=0.681  Sum_probs=48.1

Q ss_pred             CCEECCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf             63044568887877----7886876107774433565308983035788886687143
Q gi|254780469|r    7 RSLKSICPECRKGS----MVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEEVK   60 (63)
Q Consensus         7 k~~k~~CP~C~k~~----~~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~~~~~~~~e~~   60 (63)
                      +.++++||+|++++    +|+||||||+|||+||||+||+|+|+||++..++++++..
T Consensus         3 ~~~~V~CP~C~~~v~w~~~n~~RPFCS~RCkliDLG~Wa~E~y~Ip~~~~~~~~dd~~   60 (62)
T PRK00418          3 EPITVNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDWS   60 (62)
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             9727479899895445778886873457760340777755574477989888642322


No 2  
>pfam03884 DUF329 Domain of unknown function (DUF329). The function of this short domain is unknown it contains four conserved cysteines and may therefore be involved in zinc binding.
Probab=99.85  E-value=2e-22  Score=148.96  Aligned_cols=49  Identities=41%  Similarity=0.849  Sum_probs=42.7

Q ss_pred             EECCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             044568887877----7886876107774433565308983035788886687
Q gi|254780469|r    9 LKSICPECRKGS----MVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEE   57 (63)
Q Consensus         9 ~k~~CP~C~k~~----~~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~~~~~~~~   57 (63)
                      |+++||+|+|++    +++||||||+||++||||+||+|+|+||+++.+++.+
T Consensus         1 m~v~CP~C~k~~~~~~~~~~rPFCS~RC~~iDLg~W~~e~y~Ip~~~~~~~~~   53 (57)
T pfam03884         1 MTVKCPTCGKPVVWSEENPFRPFCSERCKLIDLGAWASEEYRIPGEPDDEDEE   53 (57)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             94268699897555766886884037775310889866783367989887433


No 3  
>PRK01343 zinc-binding protein; Provisional
Probab=99.84  E-value=1e-21  Score=144.94  Aligned_cols=50  Identities=52%  Similarity=1.058  Sum_probs=45.4

Q ss_pred             CEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             30445688878777886876107774433565308983035788886687
Q gi|254780469|r    8 SLKSICPECRKGSMVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEE   57 (63)
Q Consensus         8 ~~k~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~~~~~~~~   57 (63)
                      ..+..||+|+|++++.||||||+||++||||+||+|+|+||+.+.+++++
T Consensus         7 ~~~~~CPiC~k~~~~~~rPFCS~RC~~iDLgrWl~g~Y~IP~~~~~~ddE   56 (56)
T PRK01343          7 RPTRPCPECGKPSTREAYPFCSERCRDVDLNRWLSGSYVIPGAPDEEDDE   56 (56)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             89998988899774444773436672635889865861357988676677


No 4  
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83  E-value=1.4e-21  Score=144.24  Aligned_cols=49  Identities=35%  Similarity=0.807  Sum_probs=42.5

Q ss_pred             CCEECCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             630445688878777----8868761077744335653089830357888866
Q gi|254780469|r    7 RSLKSICPECRKGSM----VEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKS   55 (63)
Q Consensus         7 k~~k~~CP~C~k~~~----~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~~~~~~   55 (63)
                      ..++++||+|||+++    ++||||||+|||+||||+||+|+|+||+++...+
T Consensus         4 ~~~~v~CP~Cgkpv~w~~~s~frPFCSkRCklIDLg~Wa~eey~Ip~~~e~~~   56 (65)
T COG3024           4 LRITVPCPTCGKPVVWGEESPFRPFCSKRCKLIDLGEWAAEEYAIPDETEDSD   56 (65)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCCCCC
T ss_conf             66215388778833346667767633676621215365436702578755676


No 5  
>pfam09889 DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF2116). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=91.09  E-value=0.12  Score=31.34  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             4568887877788687610777443
Q gi|254780469|r   11 SICPECRKGSMVEFYPFCSTQCRSI   35 (63)
Q Consensus        11 ~~CP~C~k~~~~~~rPFCS~RC~~i   35 (63)
                      .-|++||++... -.-|||++|+.+
T Consensus         4 kHC~vCG~~Ipp-~e~fCS~kC~~~   27 (59)
T pfam09889         4 KHCIVCGTAIPP-DESFCSEKCQEE   27 (59)
T ss_pred             CCCCCCCCCCCC-CCCCCCHHHHHH
T ss_conf             535657997894-322314889999


No 6  
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=90.72  E-value=0.13  Score=31.16  Aligned_cols=24  Identities=29%  Similarity=0.605  Sum_probs=18.4

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             4568887877788687610777443
Q gi|254780469|r   11 SICPECRKGSMVEFYPFCSTQCRSI   35 (63)
Q Consensus        11 ~~CP~C~k~~~~~~rPFCS~RC~~i   35 (63)
                      .-||+||++.... .-|||++|+-|
T Consensus         9 ~HC~VCg~aIp~d-e~~CSe~C~ei   32 (64)
T COG4068           9 RHCVVCGKAIPPD-EQVCSEECGEI   32 (64)
T ss_pred             CCCCCCCCCCCCC-CCHHHHHHHHH
T ss_conf             6566058868974-03688999999


No 7  
>pfam10013 DUF2256 Uncharacterized protein conserved in bacteria (DUF2256). Members of this family of hypothetical bacterial proteins have no known function.
Probab=88.32  E-value=0.29  Score=29.17  Aligned_cols=24  Identities=33%  Similarity=0.836  Sum_probs=18.8

Q ss_pred             CCCCCCCCCCC--------CCCCCCHHHHHHH
Q ss_conf             45688878777--------8868761077744
Q gi|254780469|r   11 SICPECRKGSM--------VEFYPFCSTQCRS   34 (63)
Q Consensus        11 ~~CP~C~k~~~--------~~~rPFCS~RC~~   34 (63)
                      ..|++||.|..        ..---|||+||+-
T Consensus         9 K~C~~C~rpf~WRKKW~r~Wd~VkyCS~rCrr   40 (42)
T pfam10013         9 KICPVCGRPFTWRKKWARNWDEVKYCSERCRR   40 (42)
T ss_pred             CCCCCCCCCCHHHHHHHHHCCHHCCHHHHHCC
T ss_conf             64654699528999998717023008888732


No 8  
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.38  E-value=0.33  Score=28.84  Aligned_cols=29  Identities=31%  Similarity=0.775  Sum_probs=20.6

Q ss_pred             CCCCCCCCCCCC--------CCCCCHHHHHHHHHHHH
Q ss_conf             456888787778--------86876107774433565
Q gi|254780469|r   11 SICPECRKGSMV--------EFYPFCSTQCRSIDLSR   39 (63)
Q Consensus        11 ~~CP~C~k~~~~--------~~rPFCS~RC~~iDLg~   39 (63)
                      ..||.|+.|...        .---+||+||+-.--|+
T Consensus        13 KICpvCqRPFsWRkKW~~cWDeVKyCSeRCrr~Rs~~   49 (54)
T COG4338          13 KICPVCQRPFSWRKKWARCWDEVKYCSERCRRLRSGR   49 (54)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             4515426961899999999999889999999986225


No 9  
>pfam04640 PLATZ PLATZ transcription factor. Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression.
Probab=69.20  E-value=1.8  Score=24.65  Aligned_cols=30  Identities=27%  Similarity=0.603  Sum_probs=22.3

Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             7766304456888787778868761077744
Q gi|254780469|r    4 SDFRSLKSICPECRKGSMVEFYPFCSTQCRS   34 (63)
Q Consensus         4 ~~~k~~k~~CP~C~k~~~~~~rPFCS~RC~~   34 (63)
                      ..++.....|-+|+.....+|+ |||-.||.
T Consensus        43 r~~~~~~~~C~~C~R~L~d~~~-fCSl~CKv   72 (72)
T pfam04640        43 RPGKGSGNICETCDRSLQDPFR-FCSLGCKV   72 (72)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC-EEEEEEEC
T ss_conf             8889999811626563788775-74535559


No 10 
>pfam10071 DUF2310 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310). Members of this family of proteobacterial zinc ribbon proteins are thought to bind to nucleic acids, however their exact function has not as yet been defined.
Probab=67.74  E-value=1.6  Score=24.97  Aligned_cols=35  Identities=20%  Similarity=0.541  Sum_probs=25.0

Q ss_pred             CCCEECCCCCCCCCC--C---CCCCCCHHHHHHHHHHHHH
Q ss_conf             663044568887877--7---8868761077744335653
Q gi|254780469|r    6 FRSLKSICPECRKGS--M---VEFYPFCSTQCRSIDLSRW   40 (63)
Q Consensus         6 ~k~~k~~CP~C~k~~--~---~~~rPFCS~RC~~iDLg~W   40 (63)
                      -+...++||.||+.-  .   ...+.|+.+.|++|-=-.|
T Consensus       217 ~~e~~r~CP~Cg~dW~L~~plh~iF~FKCd~CRLVSnlSw  256 (259)
T pfam10071       217 ASEQARKCPSCGGDWRLAEPLHDIFDFKCDKCRLVSNLSW  256 (259)
T ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEECCCCC
T ss_conf             6673299989997516698557501203775301103565


No 11 
>LOAD_FCS consensus
Probab=64.20  E-value=2.8  Score=23.64  Aligned_cols=28  Identities=32%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             CCEECCCCCCCCCCCC--------CCCCCHHHHHHH
Q ss_conf             6304456888787778--------868761077744
Q gi|254780469|r    7 RSLKSICPECRKGSMV--------EFYPFCSTQCRS   34 (63)
Q Consensus         7 k~~k~~CP~C~k~~~~--------~~rPFCS~RC~~   34 (63)
                      .....+|..|++....        ..+.|||+-|..
T Consensus         3 ~~~~~~C~~C~~~~~~~~~~~~~g~~~~FCS~~C~~   38 (40)
T LOAD_FCS          3 GSKLRKCAFCGKEIQPKEEVYFVGKVKRFCSESCLS   38 (40)
T ss_pred             CCHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf             640023111265468540477642677773587774


No 12 
>pfam11023 DUF2614 Protein of unknown function (DUF2614). This is a family of proteins conserved in the Bacillaceae family. Some members are annotated as being protein YgzB. The function is not known.
Probab=62.19  E-value=3.4  Score=23.11  Aligned_cols=17  Identities=24%  Similarity=0.778  Sum_probs=14.2

Q ss_pred             CCCCEECCCCCCCCCCC
Q ss_conf             76630445688878777
Q gi|254780469|r    5 DFRSLKSICPECRKGSM   21 (63)
Q Consensus         5 ~~k~~k~~CP~C~k~~~   21 (63)
                      ..|+.++.||.|+|++.
T Consensus        64 STkAvqV~CP~C~K~TK   80 (114)
T pfam11023        64 STKAVQVVCPNCGKPTK   80 (114)
T ss_pred             CCCEEEEECCCCCCCHH
T ss_conf             04405778989997113


No 13 
>pfam04945 YHS YHS domain. This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterized membrane proteins. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.
Probab=61.19  E-value=2.9  Score=23.53  Aligned_cols=22  Identities=32%  Similarity=0.624  Sum_probs=15.9

Q ss_pred             CCCCCCCC----------CCCCCCHHHHHHHH
Q ss_conf             88878777----------88687610777443
Q gi|254780469|r   14 PECRKGSM----------VEFYPFCSTQCRSI   35 (63)
Q Consensus        14 P~C~k~~~----------~~~rPFCS~RC~~i   35 (63)
                      |+||-.+.          .+.+=|||+.|+..
T Consensus         1 PVCGM~V~~~~~~~~~y~G~~Y~FCS~~C~~k   32 (44)
T pfam04945         1 PVCGMYVKPRAAYKLEYEGRRYHFCSEGCKDK   32 (44)
T ss_pred             CCCCCEECCCCCCCEEECCEEEEEECHHHHHH
T ss_conf             98887868888871689994899858888699


No 14 
>PRK02935 hypothetical protein; Provisional
Probab=61.12  E-value=3.7  Score=22.94  Aligned_cols=17  Identities=29%  Similarity=0.796  Sum_probs=14.2

Q ss_pred             CCCCEECCCCCCCCCCC
Q ss_conf             76630445688878777
Q gi|254780469|r    5 DFRSLKSICPECRKGSM   21 (63)
Q Consensus         5 ~~k~~k~~CP~C~k~~~   21 (63)
                      ..|+.++.||.|+|++.
T Consensus        64 STkAvqV~CP~C~K~TK   80 (117)
T PRK02935         64 STKAVQVICPSCDKPTK   80 (117)
T ss_pred             CCCEEEEECCCCCCCHH
T ss_conf             04405778989997113


No 15 
>TIGR00354 polC DNA polymerase II, large subunit DP2; InterPro: IPR004475 This family represents the large subunit, DP2, of a two subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006308 DNA catabolic process.
Probab=58.00  E-value=2.7  Score=23.72  Aligned_cols=29  Identities=24%  Similarity=0.588  Sum_probs=19.2

Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             44568887877788687610777443356
Q gi|254780469|r   10 KSICPECRKGSMVEFYPFCSTQCRSIDLS   38 (63)
Q Consensus        10 k~~CP~C~k~~~~~~rPFCS~RC~~iDLg   38 (63)
                      ..+||.||+.+-..-=|||-.|--+...|
T Consensus       679 ~~~CP~Cgk~s~~~~Cp~CG~~te~~~~g  707 (1173)
T TIGR00354       679 IAKCPSCGKESLYRVCPVCGEKTELDEYG  707 (1173)
T ss_pred             CCCCCCCCCCCEEEECCCCCCEEEECCCC
T ss_conf             12188766400001457788545445778


No 16 
>PRK05776 DNA topoisomerase III; Provisional
Probab=57.06  E-value=6.5  Score=21.53  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             445688878777886876107774433565
Q gi|254780469|r   10 KSICPECRKGSMVEFYPFCSTQCRSIDLSR   39 (63)
Q Consensus        10 k~~CP~C~k~~~~~~rPFCS~RC~~iDLg~   39 (63)
                      .++||.||+.+...  +-||-.|..++.-+
T Consensus       602 ~g~Cp~Cg~~~~~~--~~c~~~~~~~~~~~  629 (675)
T PRK05776        602 PRKCKLCGREAEKD--GLCKYHYNAIDRLR  629 (675)
T ss_pred             CCCCCCCCCHHHCC--CCHHHHHHHHHHHH
T ss_conf             78898766023118--71187899999998


No 17 
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308   These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=55.66  E-value=6.2  Score=21.66  Aligned_cols=39  Identities=31%  Similarity=0.560  Sum_probs=29.8

Q ss_pred             CCCEECCCCCCC--CCCC--------CCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             663044568887--8777--------8868761077744335653089830
Q gi|254780469|r    6 FRSLKSICPECR--KGSM--------VEFYPFCSTQCRSIDLSRWLHGEYV   46 (63)
Q Consensus         6 ~k~~k~~CP~C~--k~~~--------~~~rPFCS~RC~~iDLg~W~~e~Y~   46 (63)
                      |=-.-..||.||  .+-.        ..|-=|=...-=+|||+  +||+|.
T Consensus       738 fDLp~K~CP~Cgak~pl~kDG~~IPFETFLGF~GDKVPDIDLN--FSGEYQ  786 (1264)
T TIGR01405       738 FDLPDKDCPKCGAKAPLKKDGQDIPFETFLGFKGDKVPDIDLN--FSGEYQ  786 (1264)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHH
T ss_conf             7685788888887776345736998500167788846864467--872247


No 18 
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=52.56  E-value=7.8  Score=21.09  Aligned_cols=17  Identities=35%  Similarity=0.714  Sum_probs=12.3

Q ss_pred             CEECCCCCCCCCCCCCC
Q ss_conf             30445688878777886
Q gi|254780469|r    8 SLKSICPECRKGSMVEF   24 (63)
Q Consensus         8 ~~k~~CP~C~k~~~~~~   24 (63)
                      +++-+||.||..+..++
T Consensus        15 TLke~Cp~CG~~t~~~~   31 (59)
T COG2260          15 TLKEKCPVCGGDTKVPH   31 (59)
T ss_pred             EECCCCCCCCCCCCCCC
T ss_conf             61133778887454678


No 19 
>pfam04135 Nop10p Nucleolar RNA-binding protein, Nop10p family. Nop10p is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10p is probably necessary for the stability of these RNPs.
Probab=51.63  E-value=7.3  Score=21.26  Aligned_cols=18  Identities=33%  Similarity=0.645  Sum_probs=13.2

Q ss_pred             CCEECCCCCCCCCCCCCC
Q ss_conf             630445688878777886
Q gi|254780469|r    7 RSLKSICPECRKGSMVEF   24 (63)
Q Consensus         7 k~~k~~CP~C~k~~~~~~   24 (63)
                      =+++.+||.||.++.+.+
T Consensus        14 YTLk~~cp~cG~~t~~ah   31 (53)
T pfam04135        14 YTLKDKCPECGGPTKSAH   31 (53)
T ss_pred             EECCCCCCCCCCCCCCCC
T ss_conf             767784688988467678


No 20 
>KOG0978 consensus
Probab=50.66  E-value=5.8  Score=21.80  Aligned_cols=21  Identities=14%  Similarity=0.480  Sum_probs=11.7

Q ss_pred             CCCEECCCCCCCCCC-CCCCCC
Q ss_conf             663044568887877-788687
Q gi|254780469|r    6 FRSLKSICPECRKGS-MVEFYP   26 (63)
Q Consensus         6 ~k~~k~~CP~C~k~~-~~~~rP   26 (63)
                      +.++.++||+|+.+. .|.++|
T Consensus       674 ~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978         674 YETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCC
T ss_conf             9885487999888878531100


No 21 
>PRK05638 threonine synthase; Validated
Probab=50.46  E-value=7.5  Score=21.19  Aligned_cols=24  Identities=33%  Similarity=0.827  Sum_probs=18.4

Q ss_pred             EECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             04456888787778868761077744
Q gi|254780469|r    9 LKSICPECRKGSMVEFYPFCSTQCRS   34 (63)
Q Consensus         9 ~k~~CP~C~k~~~~~~rPFCS~RC~~   34 (63)
                      ++.+|+.||+..++...++|  +|-.
T Consensus         1 ~~LkC~~CG~~y~~~~~~~C--~CG~   24 (443)
T PRK05638          1 VKVKCPKCGREYNSYIPPFC--ICGE   24 (443)
T ss_pred             CCCCCCCCCCCCCCCCCCCC--CCCC
T ss_conf             96888764775688899447--9998


No 22 
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=50.37  E-value=8.7  Score=20.82  Aligned_cols=17  Identities=35%  Similarity=0.718  Sum_probs=11.9

Q ss_pred             CEECCCCCCCCCCCCCC
Q ss_conf             30445688878777886
Q gi|254780469|r    8 SLKSICPECRKGSMVEF   24 (63)
Q Consensus         8 ~~k~~CP~C~k~~~~~~   24 (63)
                      +++..||.||..+.+.+
T Consensus        15 TL~~~CP~CG~~t~~~~   31 (54)
T PRK13130         15 TLKETCPECGGKTKNPH   31 (54)
T ss_pred             ECCCCCCCCCCCCCCCC
T ss_conf             03252866887267679


No 23 
>KOG2879 consensus
Probab=47.47  E-value=9.8  Score=20.53  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=16.3

Q ss_pred             CCCCCCEECCCCCCCCCCCCCC
Q ss_conf             7776630445688878777886
Q gi|254780469|r    3 TSDFRSLKSICPECRKGSMVEF   24 (63)
Q Consensus         3 ~~~~k~~k~~CP~C~k~~~~~~   24 (63)
                      ++...+.++.||+||++.+.+|
T Consensus       232 sss~~t~~~~C~~Cg~~PtiP~  253 (298)
T KOG2879         232 SSSTGTSDTECPVCGEPPTIPH  253 (298)
T ss_pred             CCCCCCCCCEEECCCCCCCCCE
T ss_conf             6665647755006699999873


No 24 
>pfam06467 zf-FCS MYM-type Zinc finger with FCS sequence motif. MYM-type zinc fingers were identified in MYM family proteins. Human zinc finger protein 261 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Human zinc finger protein 198 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.
Probab=41.01  E-value=9.9  Score=20.52  Aligned_cols=28  Identities=32%  Similarity=0.558  Sum_probs=20.9

Q ss_pred             CCEECCCCCCCCCC---------CCCCCCCHHHHHHH
Q ss_conf             63044568887877---------78868761077744
Q gi|254780469|r    7 RSLKSICPECRKGS---------MVEFYPFCSTQCRS   34 (63)
Q Consensus         7 k~~k~~CP~C~k~~---------~~~~rPFCS~RC~~   34 (63)
                      ...+..|-.|++..         ......|||+-|..
T Consensus         3 ~~~~~~C~~C~~~~~~~~~~~~~~g~~~~FCS~~C~~   39 (41)
T pfam06467         3 NLVKARCTYCKKYLPSKPTALQWDGSVKQFCSTTCLD   39 (41)
T ss_pred             CEEEEECCCCCCCCCCCCHHHHCCCCHHHEEECCCCC
T ss_conf             5012210004763466844542077532023031015


No 25 
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=40.57  E-value=15  Score=19.52  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=15.0

Q ss_pred             CCCCCCCEECCCCCCCCCC
Q ss_conf             8777663044568887877
Q gi|254780469|r    2 QTSDFRSLKSICPECRKGS   20 (63)
Q Consensus         2 ~~~~~k~~k~~CP~C~k~~   20 (63)
                      +.++-+-++++||-|+...
T Consensus         3 ~~p~S~FlkVkC~~C~neq   21 (59)
T PRK00415          3 PQPRSRFLKVKCPDCGNEQ   21 (59)
T ss_pred             CCCCCCEEEEECCCCCCEE
T ss_conf             7898728987999999867


No 26 
>PTZ00083 40S ribosomal protein S27; Provisional
Probab=38.24  E-value=16  Score=19.34  Aligned_cols=20  Identities=20%  Similarity=0.389  Sum_probs=16.1

Q ss_pred             CCCCCCCCEECCCCCCCCCC
Q ss_conf             98777663044568887877
Q gi|254780469|r    1 MQTSDFRSLKSICPECRKGS   20 (63)
Q Consensus         1 m~~~~~k~~k~~CP~C~k~~   20 (63)
                      ++.+|-.-|.++||.|++..
T Consensus        26 Vq~PnS~FmdVkCpgC~~it   45 (85)
T PTZ00083         26 VQGPNSYFMDVKCPGCLTIT   45 (85)
T ss_pred             ECCCCCEEEEEECCCCCCEE
T ss_conf             03998307986899999703


No 27 
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=36.35  E-value=14  Score=19.58  Aligned_cols=15  Identities=27%  Similarity=0.539  Sum_probs=13.2

Q ss_pred             CCCEECCCCCCCCCC
Q ss_conf             663044568887877
Q gi|254780469|r    6 FRSLKSICPECRKGS   20 (63)
Q Consensus         6 ~k~~k~~CP~C~k~~   20 (63)
                      ++++++|||.|++..
T Consensus        44 ~~nLW~KCp~C~~~i   58 (305)
T CHL00174         44 YRHLWVQCENCYGLN   58 (305)
T ss_pred             CCCCCCCCCCCCCHH
T ss_conf             177465498766224


No 28 
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=35.61  E-value=18  Score=18.97  Aligned_cols=41  Identities=32%  Similarity=0.555  Sum_probs=29.7

Q ss_pred             CCCCCEECCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             776630445688878777--------8868761077744335653089830
Q gi|254780469|r    4 SDFRSLKSICPECRKGSM--------VEFYPFCSTQCRSIDLSRWLHGEYV   46 (63)
Q Consensus         4 ~~~k~~k~~CP~C~k~~~--------~~~rPFCS~RC~~iDLg~W~~e~Y~   46 (63)
                      +-|--.-..||.||.+-.        ..|.-|=...--+|||+  ++|+|.
T Consensus       933 sGfDLpdK~CPkCg~pl~kDG~dIPFETFlGF~GDKVPDIDLN--FSGeYQ  981 (1444)
T COG2176         933 SGFDLPDKDCPKCGTPLKKDGHDIPFETFLGFKGDKVPDIDLN--FSGEYQ  981 (1444)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC--CCCCCC
T ss_conf             7888899989867994356898787255327788878876676--786441


No 29 
>pfam12156 ATPase-cat_bd Putative metal-binding domain of cation transport ATPase. This domain is found in bacteria, and is approximately 90 amino acids in length. It is found associated with pfam00403, pfam00122, pfam00702. The cysteine-rich nature and composition suggest this might be a cation-binding domain; most members are annotated as being cation transport ATPases.
Probab=35.17  E-value=28  Score=17.96  Aligned_cols=26  Identities=19%  Similarity=0.482  Sum_probs=19.9

Q ss_pred             CCCCCCCCCCC----------CCCCCCHHHHHHHHH
Q ss_conf             45688878777----------886876107774433
Q gi|254780469|r   11 SICPECRKGSM----------VEFYPFCSTQCRSID   36 (63)
Q Consensus        11 ~~CP~C~k~~~----------~~~rPFCS~RC~~iD   36 (63)
                      .+|=.||.+..          ..-|+||..-|+.|=
T Consensus         1 ~~C~HCg~~~p~~~~~~~~i~g~~~~fCC~GC~~V~   36 (88)
T pfam12156         1 TKCFHCGLPVPEGEPFTAEIDGQERDFCCPGCQAVA   36 (88)
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf             967678997899885567778973441477899999


No 30 
>smart00746 TRASH metallochaperone-like domain.
Probab=34.35  E-value=17  Score=19.22  Aligned_cols=22  Identities=36%  Similarity=0.833  Sum_probs=15.7

Q ss_pred             CCCCCCCCC-----------CCCCCCHHHHHHH
Q ss_conf             688878777-----------8868761077744
Q gi|254780469|r   13 CPECRKGSM-----------VEFYPFCSTQCRS   34 (63)
Q Consensus        13 CP~C~k~~~-----------~~~rPFCS~RC~~   34 (63)
                      |+.|++...           ..-+-|||+.|..
T Consensus         1 C~~Cg~~i~~~~~~~~~~~~g~~~~FCs~~C~~   33 (39)
T smart00746        1 CSFCGKDIYNPGTGIMVVNDGKVFYFCSSKCLS   33 (39)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCEEEEECHHHHH
T ss_conf             935578632799508998289689982777876


No 31 
>pfam04159 NB NB glycoprotein. The NB glycoprotein is found in Influenza type B virus. Its function is unknown.
Probab=32.99  E-value=14  Score=19.65  Aligned_cols=15  Identities=33%  Similarity=1.048  Sum_probs=10.7

Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             44568887877788687610777
Q gi|254780469|r   10 KSICPECRKGSMVEFYPFCSTQC   32 (63)
Q Consensus        10 k~~CP~C~k~~~~~~rPFCS~RC   32 (63)
                      ..||+-|.        |||.+|=
T Consensus        59 rikcs~ce--------pfcnkr~   73 (100)
T pfam04159        59 RIKCSGCE--------PFCNKRD   73 (100)
T ss_pred             CCCCCCCC--------CHHCCCC
T ss_conf             03368872--------1002667


No 32 
>pfam04423 Rad50_zn_hook Rad50 zinc hook motif. The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.
Probab=32.36  E-value=13  Score=19.87  Aligned_cols=14  Identities=29%  Similarity=0.586  Sum_probs=10.5

Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             45688878777886
Q gi|254780469|r   11 SICPECRKGSMVEF   24 (63)
Q Consensus        11 ~~CP~C~k~~~~~~   24 (63)
                      ..||+||.+.+...
T Consensus        21 ~~CPvC~r~l~~e~   34 (54)
T pfam04423        21 GCCPVCGRPLDEEH   34 (54)
T ss_pred             CCCCCCCCCCCHHH
T ss_conf             87776699766788


No 33 
>COG3350 Uncharacterized conserved protein [Function unknown]
Probab=32.31  E-value=21  Score=18.66  Aligned_cols=27  Identities=30%  Similarity=0.604  Sum_probs=19.1

Q ss_pred             EECCCCCCCCCCCC-----------CCCCCHHHHHHHH
Q ss_conf             04456888787778-----------8687610777443
Q gi|254780469|r    9 LKSICPECRKGSMV-----------EFYPFCSTQCRSI   35 (63)
Q Consensus         9 ~k~~CP~C~k~~~~-----------~~rPFCS~RC~~i   35 (63)
                      +.+.=|+||..+++           +.+=|||+.|+.-
T Consensus         1 ~~~iDPVcgm~v~~~~a~~k~~Y~GktYYFcse~~~~~   38 (53)
T COG3350           1 IDVIDPVCGMKVDNENAEYKSSYGGKTYYFCSEECKEK   38 (53)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCEEEEEECHHHHHH
T ss_conf             96536776765266555105875887899708999999


No 34 
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A  (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=30.77  E-value=28  Score=17.97  Aligned_cols=38  Identities=26%  Similarity=0.508  Sum_probs=26.1

Q ss_pred             CCEECCCCCCCCCCC----------------CCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             630445688878777----------------8868761077744335653089830
Q gi|254780469|r    7 RSLKSICPECRKGSM----------------VEFYPFCSTQCRSIDLSRWLHGEYV   46 (63)
Q Consensus         7 k~~k~~CP~C~k~~~----------------~~~rPFCS~RC~~iDLg~W~~e~Y~   46 (63)
                      .++-..|=+|+-|..                .+-+.|||+-|+-|...  --|.|+
T Consensus       377 ~tlP~lC~~Cq~P~~~~~~~~~~~~r~~ey~G~~y~fcSe~c~wiF~~--ePerY~  430 (465)
T cd01057         377 ETLPPLCNVCQVPCVFTEDLTAEAPRVLEYNGRKYHFCSEGCEWIFEQ--EPERYA  430 (465)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCHHHHHHHHH--CHHHHC
T ss_conf             989871236678606177777665136778887650268066767775--968653


No 35 
>pfam10122 Mu-like_Com Mu-like prophage protein Com. Members of this family of proteins comprise the translational regulator of mom.
Probab=30.68  E-value=22  Score=18.59  Aligned_cols=16  Identities=31%  Similarity=0.717  Sum_probs=12.6

Q ss_pred             CCCCCEECCCCCCCCC
Q ss_conf             7766304456888787
Q gi|254780469|r    4 SDFRSLKSICPECRKG   19 (63)
Q Consensus         4 ~~~k~~k~~CP~C~k~   19 (63)
                      -.|-.+.+|||.||.-
T Consensus        18 g~~~elqIKCpRCgtl   33 (51)
T pfam10122        18 GAFSELQIKCPRCGTL   33 (51)
T ss_pred             CCCEEEEEECCCCCCC
T ss_conf             6750588856866751


No 36 
>pfam05573 NosL NosL. NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallo-centre assembly.
Probab=29.71  E-value=29  Score=17.86  Aligned_cols=27  Identities=30%  Similarity=0.261  Sum_probs=17.3

Q ss_pred             CCCCCCCCCC------------C-C-CCCCCHHHHHHHHHH
Q ss_conf             4568887877------------7-8-868761077744335
Q gi|254780469|r   11 SICPECRKGS------------M-V-EFYPFCSTQCRSIDL   37 (63)
Q Consensus        11 ~~CP~C~k~~------------~-~-~~rPFCS~RC~~iDL   37 (63)
                      .+||+||=.+            . . +.+=|||-+|-..-|
T Consensus        17 ~~C~vCgM~i~~~Pg~~aqi~~~~g~~~~~Fds~~~m~~~~   57 (140)
T pfam05573        17 ARCHLCGMNITEYPGPKGQIHLKGGPEPLFFCSTRDMFAFL   57 (140)
T ss_pred             CCCCCCCCCHHHCCCCCEEEEECCCCCCEEECCHHHHHHHH
T ss_conf             70188996963589820899978998411178999999998


No 37 
>PHA00732 hypothetical protein
Probab=29.37  E-value=7.6  Score=21.17  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=18.9

Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHCCCCCCCCC
Q ss_conf             445688878777886876107774433--5653089830357
Q gi|254780469|r   10 KSICPECRKGSMVEFYPFCSTQCRSID--LSRWLHGEYVIAA   49 (63)
Q Consensus        10 k~~CP~C~k~~~~~~rPFCS~RC~~iD--Lg~W~~e~Y~Ip~   49 (63)
                      -.+||+||+.--+-..-|-|+  .+||  +--||=+.|.+|-
T Consensus        27 l~kCPVC~~~y~~l~QHfy~~--~D~~HL~~cyLfstyklP~   66 (79)
T PHA00732         27 LTKCPVCNNSYRRLNQHFYSQ--YDIEHLIYCYLFSTYKLPK   66 (79)
T ss_pred             CCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHEEEECCCCCH
T ss_conf             522775047899999877643--4205620111111576758


No 38 
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558   This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=28.73  E-value=16  Score=19.39  Aligned_cols=11  Identities=36%  Similarity=1.026  Sum_probs=8.8

Q ss_pred             CCCCCCHHHHH
Q ss_conf             88687610777
Q gi|254780469|r   22 VEFYPFCSTQC   32 (63)
Q Consensus        22 ~~~rPFCS~RC   32 (63)
                      --|-|||.++|
T Consensus        55 Y~HiPFC~~~C   65 (462)
T TIGR00538        55 YVHIPFCEKAC   65 (462)
T ss_pred             CCCCHHHHCCC
T ss_conf             24552341213


No 39 
>pfam04570 DUF581 Protein of unknown function (DUF581). Family of uncharacterized proteins.
Probab=28.35  E-value=29  Score=17.84  Aligned_cols=27  Identities=33%  Similarity=0.541  Sum_probs=19.0

Q ss_pred             EECCCCCCCCCCCC--------CCCCCHHHHHHHH
Q ss_conf             04456888787778--------8687610777443
Q gi|254780469|r    9 LKSICPECRKGSMV--------EFYPFCSTQCRSI   35 (63)
Q Consensus         9 ~k~~CP~C~k~~~~--------~~rPFCS~RC~~i   35 (63)
                      .-..|-.|+|....        --++|||.-|+.-
T Consensus        16 FL~~C~~Ckk~L~~~~DIymYrG~~aFCS~eCR~~   50 (59)
T pfam04570        16 FLSSCFLCKKKLGPGKDIYMYRGDKAFCSEECRQQ   50 (59)
T ss_pred             HHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf             99987621872789985577789953128899899


No 40 
>pfam09986 DUF2225 Uncharacterized protein conserved in bacteria (DUF2225). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=27.95  E-value=24  Score=18.36  Aligned_cols=10  Identities=30%  Similarity=0.883  Sum_probs=4.7

Q ss_pred             ECCCCCCCCC
Q ss_conf             4456888787
Q gi|254780469|r   10 KSICPECRKG   19 (63)
Q Consensus        10 k~~CP~C~k~   19 (63)
                      ...||.||=.
T Consensus        48 v~vCp~CgyA   57 (214)
T pfam09986        48 VWVCPHCGYA   57 (214)
T ss_pred             EEECCCCCCC
T ss_conf             1699999854


No 41 
>pfam02891 zf-MIZ MIZ/SP-RING zinc finger. This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation.
Probab=27.20  E-value=25  Score=18.19  Aligned_cols=12  Identities=17%  Similarity=0.205  Sum_probs=4.9

Q ss_pred             CCCCCCCCCCCC
Q ss_conf             456888787778
Q gi|254780469|r   11 SICPECRKGSMV   22 (63)
Q Consensus        11 ~~CP~C~k~~~~   22 (63)
                      .+||+.......
T Consensus         3 L~CPis~~~i~~   14 (50)
T pfam02891         3 LKCPISYLRISI   14 (50)
T ss_pred             EECCCCCCEEEC
T ss_conf             368888888743


No 42 
>PRK08173 DNA topoisomerase III; Validated
Probab=26.54  E-value=18  Score=18.98  Aligned_cols=27  Identities=30%  Similarity=0.903  Sum_probs=16.2

Q ss_pred             CCCCEECCCCCCCCCCCCCCCCC-HHHHH
Q ss_conf             76630445688878777886876-10777
Q gi|254780469|r    5 DFRSLKSICPECRKGSMVEFYPF-CSTQC   32 (63)
Q Consensus         5 ~~k~~k~~CP~C~k~~~~~~rPF-CS~RC   32 (63)
                      ++.++...||.||..+...++=| || -|
T Consensus       619 ~~~~~~~~CP~Cg~~i~~~~k~y~C~-~C  646 (857)
T PRK08173        619 DYATLQTPCPNCGGVVKENYRRFACT-KC  646 (857)
T ss_pred             CCCCCCCCCCCCCCEEEECCCEEECC-CC
T ss_conf             22333578888895167556189779-99


No 43 
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300; InterPro: IPR012644   Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown..
Probab=25.87  E-value=26  Score=18.12  Aligned_cols=45  Identities=29%  Similarity=0.356  Sum_probs=23.9

Q ss_pred             CCCCCCCCEECCCCCCCCCC-CCCCCCCHHHHH-HHHHHHHHCCCCCC
Q ss_conf             98777663044568887877-788687610777-44335653089830
Q gi|254780469|r    1 MQTSDFRSLKSICPECRKGS-MVEFYPFCSTQC-RSIDLSRWLHGEYV   46 (63)
Q Consensus         1 m~~~~~k~~k~~CP~C~k~~-~~~~rPFCS~RC-~~iDLg~W~~e~Y~   46 (63)
                      |..++.= .|..||.||+-. +=.-+|--|-.| +..+|..-+.-+.+
T Consensus         1 mAkpdLG-tKrIcP~tg~KFYDLNr~P~vsPytGe~~p~~~~~~~r~~   47 (157)
T TIGR02300         1 MAKPDLG-TKRICPETGKKFYDLNRDPVVSPYTGEQFPLEEVLKSRRV   47 (157)
T ss_pred             CCCCCCC-CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHCCCEE
T ss_conf             9887678-6220687777220007895341778870475430045402


No 44 
>KOG3362 consensus
Probab=25.84  E-value=34  Score=17.50  Aligned_cols=33  Identities=24%  Similarity=0.549  Sum_probs=22.9

Q ss_pred             CCCCCCEECCCCCCCCCCC----CCCCCCHHHHHHHH
Q ss_conf             7776630445688878777----88687610777443
Q gi|254780469|r    3 TSDFRSLKSICPECRKGSM----VEFYPFCSTQCRSI   35 (63)
Q Consensus         3 ~~~~k~~k~~CP~C~k~~~----~~~rPFCS~RC~~i   35 (63)
                      ...+|.....|-+||-.+.    +=---+||.||..+
T Consensus       111 ~p~~KP~r~fCaVCG~~S~ysC~~CG~kyCsv~C~~~  147 (156)
T KOG3362         111 KPSFKPLRKFCAVCGYDSKYSCVNCGTKYCSVRCLKT  147 (156)
T ss_pred             CCCCCCCCHHHHHCCCCCHHHHHHCCCCEEECHHHHH
T ss_conf             8877874103242489860277754874250225432


No 45 
>KOG4317 consensus
Probab=24.99  E-value=27  Score=18.03  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=14.3

Q ss_pred             EECCCCCCCCCCCC-----CCCCCHHHHH
Q ss_conf             04456888787778-----8687610777
Q gi|254780469|r    9 LKSICPECRKGSMV-----EFYPFCSTQC   32 (63)
Q Consensus         9 ~k~~CP~C~k~~~~-----~~rPFCS~RC   32 (63)
                      -...||+|++....     =..|+||-||
T Consensus         6 ~~~~C~ic~vq~~~YtCPRCn~~YCsl~C   34 (383)
T KOG4317           6 SFLACGICGVQKREYTCPRCNLLYCSLKC   34 (383)
T ss_pred             CEEECCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             50342345544200558777764200343


No 46 
>PRK05978 hypothetical protein; Provisional
Probab=24.18  E-value=26  Score=18.16  Aligned_cols=14  Identities=36%  Similarity=1.087  Sum_probs=11.1

Q ss_pred             CCEECCCCCCCCCC
Q ss_conf             63044568887877
Q gi|254780469|r    7 RSLKSICPECRKGS   20 (63)
Q Consensus         7 k~~k~~CP~C~k~~   20 (63)
                      |.++.+||.||+..
T Consensus        31 RGlr~rCP~CG~G~   44 (149)
T PRK05978         31 RGFRGRCPHCGEGK   44 (149)
T ss_pred             HHHCCCCCCCCCCH
T ss_conf             88737598999941


No 47 
>pfam10571 UPF0547 Uncharacterized protein family UPF0547. This domain contains a zinc-ribbon motif.
Probab=24.06  E-value=38  Score=17.19  Aligned_cols=19  Identities=32%  Similarity=0.894  Sum_probs=12.2

Q ss_pred             CCCCCCCCCC--CCCCCCCHH
Q ss_conf             4568887877--788687610
Q gi|254780469|r   11 SICPECRKGS--MVEFYPFCS   29 (63)
Q Consensus        11 ~~CP~C~k~~--~~~~rPFCS   29 (63)
                      ..||.|++.+  ....=|+|-
T Consensus         1 K~CP~C~~~vp~~~~~Cp~CG   21 (26)
T pfam10571         1 KTCPECGAEVPLAAKICPHCG   21 (26)
T ss_pred             CCCCCCCCCCCHHCCCCCCCC
T ss_conf             968755483640034477888


No 48 
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.93  E-value=19  Score=18.90  Aligned_cols=17  Identities=29%  Similarity=0.659  Sum_probs=12.6

Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             86876107774433565
Q gi|254780469|r   23 EFYPFCSTQCRSIDLSR   39 (63)
Q Consensus        23 ~~rPFCS~RC~~iDLg~   39 (63)
                      -|-|||..||.-=|+..
T Consensus        15 iHIPFC~~~C~YCdF~~   31 (399)
T PRK07379         15 LHIPFCRRRCFYCDFPI   31 (399)
T ss_pred             EECCCCCCCCCCCCCCC
T ss_conf             86500669288999975


No 49 
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.58  E-value=21  Score=18.71  Aligned_cols=15  Identities=27%  Similarity=0.857  Sum_probs=9.6

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             687610777443356
Q gi|254780469|r   24 FYPFCSTQCRSIDLS   38 (63)
Q Consensus        24 ~rPFCS~RC~~iDLg   38 (63)
                      |-|||..+|.-=|+.
T Consensus         6 HiPFC~~~C~YCdF~   20 (351)
T PRK08446          6 HIPFCESKCGYCAFN   20 (351)
T ss_pred             ECCCCCCCCCCCCCC
T ss_conf             817838808999792


No 50 
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=23.41  E-value=19  Score=18.88  Aligned_cols=17  Identities=29%  Similarity=0.866  Sum_probs=12.6

Q ss_pred             CCCCHHHHHHHHHHHHH
Q ss_conf             68761077744335653
Q gi|254780469|r   24 FYPFCSTQCRSIDLSRW   40 (63)
Q Consensus        24 ~rPFCS~RC~~iDLg~W   40 (63)
                      |-|||.+||.-=|+...
T Consensus         9 HiPFC~~~C~yC~f~~~   25 (374)
T PRK05799          9 HIPFCKQKCLYCDFPSY   25 (374)
T ss_pred             EECCCCCCCCCCCCCCC
T ss_conf             94899985899979474


No 51 
>pfam01667 Ribosomal_S27e Ribosomal protein S27.
Probab=23.35  E-value=36  Score=17.31  Aligned_cols=16  Identities=25%  Similarity=0.476  Sum_probs=11.9

Q ss_pred             CCCCEECCCCCCCCCC
Q ss_conf             7663044568887877
Q gi|254780469|r    5 DFRSLKSICPECRKGS   20 (63)
Q Consensus         5 ~~k~~k~~CP~C~k~~   20 (63)
                      |-+=|+++||-|++..
T Consensus         2 nS~F~~VkCp~C~n~~   17 (55)
T pfam01667         2 NSYFLDVKCPGCGNIT   17 (55)
T ss_pred             CCEEEEEECCCCCCEE
T ss_conf             8615884999999756


No 52 
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=23.00  E-value=19  Score=18.94  Aligned_cols=11  Identities=27%  Similarity=0.649  Sum_probs=8.4

Q ss_pred             ECCCCCCCCCC
Q ss_conf             44568887877
Q gi|254780469|r   10 KSICPECRKGS   20 (63)
Q Consensus        10 k~~CP~C~k~~   20 (63)
                      .+.||+|++..
T Consensus         1 ~v~CPVC~~~v   11 (26)
T smart00734        1 LVQCPVCFREV   11 (26)
T ss_pred             CCCCCHHHHHC
T ss_conf             97576259883


No 53 
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and  believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.48  E-value=35  Score=17.40  Aligned_cols=10  Identities=30%  Similarity=0.770  Sum_probs=6.4

Q ss_pred             CCCCCCCCCC
Q ss_conf             4568887877
Q gi|254780469|r   11 SICPECRKGS   20 (63)
Q Consensus        11 ~~CP~C~k~~   20 (63)
                      .+||+|+.+.
T Consensus        19 ~~CPvC~~~~   28 (34)
T cd00729          19 EKCPICGAPK   28 (34)
T ss_pred             CCCCCCCCCH
T ss_conf             7586999967


No 54 
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=22.33  E-value=23  Score=18.47  Aligned_cols=17  Identities=35%  Similarity=0.960  Sum_probs=12.5

Q ss_pred             CCCCHHHHHHHHHHHHH
Q ss_conf             68761077744335653
Q gi|254780469|r   24 FYPFCSTQCRSIDLSRW   40 (63)
Q Consensus        24 ~rPFCS~RC~~iDLg~W   40 (63)
                      |-|||..+|.-=|+...
T Consensus         8 HiPFC~~~C~yC~f~~~   24 (376)
T PRK05628          8 HVPFCATRCGYCDFNTY   24 (376)
T ss_pred             ECCCCCCCCCCCCCCCC
T ss_conf             70576460899979573


No 55 
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=21.88  E-value=22  Score=18.49  Aligned_cols=17  Identities=29%  Similarity=0.704  Sum_probs=12.3

Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             86876107774433565
Q gi|254780469|r   23 EFYPFCSTQCRSIDLSR   39 (63)
Q Consensus        23 ~~rPFCS~RC~~iDLg~   39 (63)
                      -|-|||..||.-=|+..
T Consensus        11 iHIPFC~~~C~yC~f~~   27 (374)
T PRK06294         11 IHIPFCSKKCHYCSFYT   27 (374)
T ss_pred             EECCCCCCCCCCCCCEE
T ss_conf             86278998799998810


No 56 
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.54  E-value=23  Score=18.49  Aligned_cols=16  Identities=31%  Similarity=0.798  Sum_probs=11.1

Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             6876107774433565
Q gi|254780469|r   24 FYPFCSTQCRSIDLSR   39 (63)
Q Consensus        24 ~rPFCS~RC~~iDLg~   39 (63)
                      |-|||.+||.-=|+..
T Consensus        51 HiPFC~~~C~YC~f~~   66 (436)
T PRK08208         51 HIPFCESRCGFCNLFT   66 (436)
T ss_pred             ECCCCCCCCCCCCCCC
T ss_conf             7044079588999837


No 57 
>pfam12230 PRP21_like_P Pre-mRNA splicing factor PRP21 like protein. This domain family is found in eukaryotes, and is typically between 212 and 238 amino acids in length. The family is found in association with pfam01805. There are two completely conserved residues (W and H) that may be functionally important. PRP21 is required for assembly of the prespliceosome and it interacts with U2 snRNP and/or pre-mRNA in the prespliceosome. This family also contains proteins similar to PRP21, such as the mammalian SF3a. SF3a also interacts with U2 snRNP from the prespliceosome, converting it to its active form.
Probab=21.28  E-value=48  Score=16.61  Aligned_cols=13  Identities=15%  Similarity=0.094  Sum_probs=9.7

Q ss_pred             CEECCCCCCCCCC
Q ss_conf             3044568887877
Q gi|254780469|r    8 SLKSICPECRKGS   20 (63)
Q Consensus         8 ~~k~~CP~C~k~~   20 (63)
                      +...+||+||+.+
T Consensus       160 ~~~~~cPitGq~I  172 (223)
T pfam12230       160 AKMIKCPITGELI  172 (223)
T ss_pred             CCEEECCCCCCCC
T ss_conf             8865778777817


No 58 
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer.  Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain.  Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.86  E-value=39  Score=17.12  Aligned_cols=10  Identities=30%  Similarity=0.853  Sum_probs=5.8

Q ss_pred             CCCCCCCCCC
Q ss_conf             4568887877
Q gi|254780469|r   11 SICPECRKGS   20 (63)
Q Consensus        11 ~~CP~C~k~~   20 (63)
                      -+||+||.+.
T Consensus        18 ~~CP~Cg~~k   27 (33)
T cd00350          18 WVCPVCGAPK   27 (33)
T ss_pred             CCCCCCCCCH
T ss_conf             7287889978


No 59 
>KOG0801 consensus
Probab=20.85  E-value=36  Score=17.33  Aligned_cols=10  Identities=40%  Similarity=0.823  Sum_probs=8.5

Q ss_pred             CCCCCCCCCC
Q ss_conf             4568887877
Q gi|254780469|r   11 SICPECRKGS   20 (63)
Q Consensus        11 ~~CP~C~k~~   20 (63)
                      .|||+|.|.+
T Consensus       139 ~KCPvC~K~V  148 (205)
T KOG0801         139 MKCPVCHKVV  148 (205)
T ss_pred             CCCCCCCCCC
T ss_conf             5477434402


No 60 
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.74  E-value=24  Score=18.29  Aligned_cols=16  Identities=31%  Similarity=0.939  Sum_probs=11.3

Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             6876107774433565
Q gi|254780469|r   24 FYPFCSTQCRSIDLSR   39 (63)
Q Consensus        24 ~rPFCS~RC~~iDLg~   39 (63)
                      |-|||..+|.-=|+..
T Consensus        10 HIPFC~~~C~YCdf~~   25 (381)
T PRK09057         10 HWPFCLAKCPYCDFNS   25 (381)
T ss_pred             EECCCCCCCCCCCCCC
T ss_conf             8178888289994987


No 61 
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.69  E-value=25  Score=18.25  Aligned_cols=17  Identities=29%  Similarity=0.848  Sum_probs=12.7

Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             86876107774433565
Q gi|254780469|r   23 EFYPFCSTQCRSIDLSR   39 (63)
Q Consensus        23 ~~rPFCS~RC~~iDLg~   39 (63)
                      -|-|||..+|.-=|+..
T Consensus        16 iHIPFC~~~C~yC~f~~   32 (390)
T PRK06582         16 IHWPFCLSKCPYCDFNS   32 (390)
T ss_pred             EEECCCCCCCCCCCCCC
T ss_conf             98389988089993907


No 62 
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=20.49  E-value=27  Score=18.08  Aligned_cols=20  Identities=20%  Similarity=0.464  Sum_probs=14.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCC
Q ss_conf             86876107774433565308
Q gi|254780469|r   23 EFYPFCSTQCRSIDLSRWLH   42 (63)
Q Consensus        23 ~~rPFCS~RC~~iDLg~W~~   42 (63)
                      -|-|||..+|--=|+..-..
T Consensus        55 iHIPFC~~~C~YC~f~~~~~   74 (453)
T PRK13347         55 LHVPFCRSLCWFCGCNTIIT   74 (453)
T ss_pred             EECCCCCCCCCCCCCCCCCC
T ss_conf             85277168089998973377


No 63 
>pfam06827 zf-FPG_IleRS Zinc finger found in FPG and IleRS. This zinc binding domain is found at the C-terminus of isoleucyl tRNA synthetase and the enzyme Formamidopyrimidine-DNA glycosylase EC:3.2.2.23.
Probab=20.05  E-value=40  Score=17.07  Aligned_cols=25  Identities=20%  Similarity=0.456  Sum_probs=16.6

Q ss_pred             CCCCCCCCCCC----CCCCCCHHHHHHHH
Q ss_conf             45688878777----88687610777443
Q gi|254780469|r   11 SICPECRKGSM----VEFYPFCSTQCRSI   35 (63)
Q Consensus        11 ~~CP~C~k~~~----~~~rPFCS~RC~~i   35 (63)
                      .+||.|+....    +...+|-..||+.+
T Consensus         2 ~kC~RCw~~~~~~~~~~r~~~~C~rCq~~   30 (30)
T pfam06827         2 EKCPRCWTYIEKVGQGGRSTFLCPRCQKV   30 (30)
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             82774799715768558888118053249


Done!