Query gi|254780469|ref|YP_003064882.1| zinc-binding protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 63 No_of_seqs 121 out of 410 Neff 4.0 Searched_HMMs 23785 Date Mon May 30 11:46:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780469.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1lv3_A Hypothetical protein YA 99.9 1.5E-23 6.2E-28 154.2 3.4 54 6-59 5-62 (68) 2 1l8d_A DNA double-strand break 68.4 0.47 2E-05 26.8 -1.3 20 6-25 43-62 (112) 3 2apo_B Ribosome biogenesis pro 44.0 8.1 0.00034 19.8 1.6 15 8-22 16-30 (60) 4 2das_A Zinc finger MYM-type pr 42.9 9.1 0.00038 19.5 1.7 30 5-34 15-53 (62) 5 2aus_D NOP10, ribosome biogene 40.9 6.5 0.00027 20.3 0.7 14 8-21 15-28 (60) 6 1weo_A Cellulose synthase, cat 38.7 17 0.00069 18.0 2.5 10 11-20 17-26 (93) 7 2inc_A Toluene, O-xylene monoo 35.0 16 0.00066 18.2 1.9 32 7-38 390-438 (491) 8 3ge3_A Toluene-4-monooxygenase 34.2 14 0.00058 18.5 1.5 32 7-38 391-439 (500) 9 2yqq_A Zinc finger HIT domain- 34.0 23 0.00096 17.2 2.6 33 4-36 6-42 (56) 10 2k5c_A Uncharacterized protein 32.1 11 0.00045 19.1 0.7 10 10-19 8-17 (95) 11 2dj8_A Protein CBFA2T1; zinc f 30.9 23 0.00095 17.3 2.2 34 5-38 10-48 (60) 12 2ecg_A Baculoviral IAP repeat- 30.5 18 0.00078 17.7 1.7 21 12-33 27-53 (75) 13 1qxf_A GR2, 30S ribosomal prot 28.2 16 0.00066 18.2 1.0 16 5-20 2-17 (66) 14 1a1t_A Nucleocapsid protein; s 26.9 19 0.00079 17.7 1.2 20 1-20 1-22 (55) 15 3n71_A Histone lysine methyltr 26.5 18 0.00076 17.8 1.1 26 12-37 51-83 (490) 16 2csy_A Zinc finger protein 183 26.3 19 0.00079 17.7 1.1 33 11-48 16-53 (81) 17 2ecm_A Ring finger and CHY zin 26.1 18 0.00077 17.8 1.0 11 10-20 5-15 (55) 18 3pdn_A SET and MYND domain-con 25.2 20 0.00084 17.6 1.1 27 11-37 47-80 (428) 19 2vje_B MDM4 protein; proto-onc 25.2 10 0.00043 19.2 -0.4 15 6-20 3-17 (63) 20 3eb5_A Baculoviral IAP repeat- 25.0 15 0.00065 18.2 0.5 13 11-23 56-68 (74) 21 2gai_A DNA topoisomerase I; zi 24.9 8 0.00033 19.8 -1.0 22 10-34 556-582 (633) 22 2w0t_A Lethal(3)malignant brai 23.9 23 0.00097 17.2 1.2 25 10-34 6-35 (43) 23 1p91_A Ribosomal RNA large sub 23.7 7.7 0.00032 19.9 -1.3 31 9-39 1-31 (269) 24 2inp_A Phenol hydroxylase comp 23.3 26 0.0011 16.9 1.4 31 8-38 389-437 (494) 25 1jjd_A Metallothionein, SMTA; 23.1 30 0.0013 16.5 1.7 30 6-35 3-38 (55) 26 2odd_A Protein CBFA2T1; MYND z 21.2 35 0.0015 16.2 1.7 30 10-39 17-51 (64) 27 2jw6_A Deformed epidermal auto 20.7 38 0.0016 16.0 1.8 31 7-37 6-41 (52) 28 2waq_P DNA-directed RNA polyme 20.6 28 0.0012 16.7 1.1 13 11-23 24-36 (48) No 1 >1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9 Probab=99.87 E-value=1.5e-23 Score=154.17 Aligned_cols=54 Identities=31% Similarity=0.673 Sum_probs=46.5 Q ss_pred CCCEECCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH Q ss_conf 663044568887877----788687610777443356530898303578888668714 Q gi|254780469|r 6 FRSLKSICPECRKGS----MVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEEV 59 (63) Q Consensus 6 ~k~~k~~CP~C~k~~----~~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~~~~~~~~e~ 59 (63) -+.++++||+|+|++ +++||||||+||++||||+||+|+|+||+.+.++.+++. T Consensus 5 ~~~~~v~CP~C~k~v~w~~~~~~rPFCS~RCk~IDLg~W~~e~y~Ip~~~~~~~~~~~ 62 (68) T 1lv3_A 5 SETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDW 62 (68) T ss_dssp CCCCEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSCSSSSSCCCCSSSCCSSSCSC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 8885214889998444577787687254766105087886678015798878766575 No 2 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Probab=68.42 E-value=0.47 Score=26.76 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=15.0 Q ss_pred CCCEECCCCCCCCCCCCCCC Q ss_conf 66304456888787778868 Q gi|254780469|r 6 FRSLKSICPECRKGSMVEFY 25 (63) Q Consensus 6 ~k~~k~~CP~C~k~~~~~~r 25 (63) .+..+.+||.||.|.+..|+ T Consensus 43 Lk~a~GkCPvCgreLtEeHk 62 (112) T 1l8d_A 43 LKKAKGKCPVCGRELTDEHR 62 (112) T ss_dssp HTTCSEECTTTCCEECHHHH T ss_pred HHHHCCCCCCCCCCCCHHHH T ss_conf 99747879988993768989 No 3 >2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A Probab=43.97 E-value=8.1 Score=19.77 Aligned_cols=15 Identities=40% Similarity=1.110 Sum_probs=10.1 Q ss_pred CEECCCCCCCCCCCC Q ss_conf 304456888787778 Q gi|254780469|r 8 SLKSICPECRKGSMV 22 (63) Q Consensus 8 ~~k~~CP~C~k~~~~ 22 (63) +++..||.||.++.+ T Consensus 16 TL~~~Cp~CG~~t~~ 30 (60) T 2apo_B 16 TLKEICPKCGEKTVI 30 (60) T ss_dssp ESSSBCSSSCSBCBC T ss_pred ECCCCCCCCCCCCCC T ss_conf 354537678784676 No 4 >2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17 Probab=42.92 E-value=9.1 Score=19.48 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=22.0 Q ss_pred CCCCEECCCCCCCCCCC---------CCCCCCHHHHHHH Q ss_conf 76630445688878777---------8868761077744 Q gi|254780469|r 5 DFRSLKSICPECRKGSM---------VEFYPFCSTQCRS 34 (63) Q Consensus 5 ~~k~~k~~CP~C~k~~~---------~~~rPFCS~RC~~ 34 (63) ..++.++.|-.|+|+.. .-..=|||.+|-. T Consensus 15 p~~a~~v~Cs~Ckk~LqKGQTAyqRkGs~qLFCSt~Ci~ 53 (62) T 2das_A 15 LTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62) T ss_dssp CSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH T ss_pred CCCCEEEECCCCCHHHHCCCHHHHHCCCCCEEECCHHHC T ss_conf 987607570114367764524776378711367547663 No 5 >2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B Probab=40.94 E-value=6.5 Score=20.31 Aligned_cols=14 Identities=36% Similarity=0.861 Sum_probs=9.7 Q ss_pred CEECCCCCCCCCCC Q ss_conf 30445688878777 Q gi|254780469|r 8 SLKSICPECRKGSM 21 (63) Q Consensus 8 ~~k~~CP~C~k~~~ 21 (63) +++..||.||.++. T Consensus 15 TLk~~CP~CG~~t~ 28 (60) T 2aus_D 15 TLKETCPVCGEKTK 28 (60) T ss_dssp ESSSBCTTTCSBCE T ss_pred ECCCCCCCCCCCCC T ss_conf 35563767878557 No 6 >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Probab=38.66 E-value=17 Score=18.02 Aligned_cols=10 Identities=20% Similarity=0.590 Sum_probs=7.6 Q ss_pred CCCCCCCCCC Q ss_conf 4568887877 Q gi|254780469|r 11 SICPECRKGS 20 (63) Q Consensus 11 ~~CP~C~k~~ 20 (63) ..||||...+ T Consensus 17 ~~C~IC~e~~ 26 (93) T 1weo_A 17 QFCEICGDQI 26 (93) T ss_dssp CBCSSSCCBC T ss_pred CCCCCCCCCC T ss_conf 9986864401 No 7 >2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 2rdb_A* Probab=34.98 E-value=16 Score=18.16 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=22.6 Q ss_pred CCEECCCCCCCCCCC-----------------CCCCCCHHHHHHHHHHH Q ss_conf 630445688878777-----------------88687610777443356 Q gi|254780469|r 7 RSLKSICPECRKGSM-----------------VEFYPFCSTQCRSIDLS 38 (63) Q Consensus 7 k~~k~~CP~C~k~~~-----------------~~~rPFCS~RC~~iDLg 38 (63) .++-..|=+|+-|.. .+-+.|||+-|+-|-+. T Consensus 390 ~~lp~~C~~cq~P~~~~~~~~~~~~~~~~~~~G~~~~fcs~~c~~if~~ 438 (491) T 2inc_A 390 ETLPTICNMCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQI 438 (491) T ss_dssp SSCBCBCTTTCSBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCHHHHHHHHC T ss_conf 8766604367886312788876543025677884533468145555632 No 8 >3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A Probab=34.20 E-value=14 Score=18.47 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=22.7 Q ss_pred CCEECCCCCCCCCCC-----------------CCCCCCHHHHHHHHHHH Q ss_conf 630445688878777-----------------88687610777443356 Q gi|254780469|r 7 RSLKSICPECRKGSM-----------------VEFYPFCSTQCRSIDLS 38 (63) Q Consensus 7 k~~k~~CP~C~k~~~-----------------~~~rPFCS~RC~~iDLg 38 (63) .++-..|=+|+-|.. .+.+.|||+-|+-|-+. T Consensus 391 ~~lp~~C~~cq~P~~~~~~~~~~~~~~~~~~~G~~~~fcs~~c~~if~~ 439 (500) T 3ge3_A 391 ETLPSVCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQQ 439 (500) T ss_dssp SSCBCBCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCHHHHHHHHC T ss_conf 9888835677886166899876320023446885544577677777731 No 9 >2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=34.01 E-value=23 Score=17.22 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=23.1 Q ss_pred CCCCCEECCCCCCCCCCC----CCCCCCHHHHHHHHH Q ss_conf 776630445688878777----886876107774433 Q gi|254780469|r 4 SDFRSLKSICPECRKGSM----VEFYPFCSTQCRSID 36 (63) Q Consensus 4 ~~~k~~k~~CP~C~k~~~----~~~rPFCS~RC~~iD 36 (63) +.++...+.|-+|+++.. .=..++||-.|-.+- T Consensus 6 ~~~~~s~~~C~vC~~~~kY~Cp~C~~~yCSl~C~k~H 42 (56) T 2yqq_A 6 SGLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKH 42 (56) T ss_dssp CCCCCCCCCCTTTCSCCSEECTTTCCEESSHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 7667597581469499864588989882288898776 No 10 >2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} Probab=32.08 E-value=11 Score=19.10 Aligned_cols=10 Identities=30% Similarity=0.766 Sum_probs=5.2 Q ss_pred ECCCCCCCCC Q ss_conf 4456888787 Q gi|254780469|r 10 KSICPECRKG 19 (63) Q Consensus 10 k~~CP~C~k~ 19 (63) ..+||+||++ T Consensus 8 MakCPlCG~~ 17 (95) T 2k5c_A 8 MAKCPICGSP 17 (95) T ss_dssp CEECSSSCCE T ss_pred HHCCCCCCCC T ss_conf 4238867882 No 11 >2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Probab=30.86 E-value=23 Score=17.26 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=23.3 Q ss_pred CCCCEECCCCCCCCCCCC-----CCCCCHHHHHHHHHHH Q ss_conf 766304456888787778-----8687610777443356 Q gi|254780469|r 5 DFRSLKSICPECRKGSMV-----EFYPFCSTQCRSIDLS 38 (63) Q Consensus 5 ~~k~~k~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg 38 (63) +.......|-.|+++... ..--+||+.|+..|-- T Consensus 10 ~~~~~~~~C~~C~~~~~~~C~~C~~~~YCS~~CQ~~~W~ 48 (60) T 2dj8_A 10 QQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE 48 (60) T ss_dssp CCCCCSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHH T ss_conf 014578847689966046488999876679999999999 No 12 >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=30.47 E-value=18 Score=17.74 Aligned_cols=21 Identities=24% Similarity=0.700 Sum_probs=10.5 Q ss_pred CCCCCCCCCCC------CCCCCHHHHHH Q ss_conf 56888787778------86876107774 Q gi|254780469|r 12 ICPECRKGSMV------EFYPFCSTQCR 33 (63) Q Consensus 12 ~CP~C~k~~~~------~~rPFCS~RC~ 33 (63) .|++|.....+ -|.-||. -|. T Consensus 27 ~C~IC~~~~~~~v~~pCgH~~~C~-~C~ 53 (75) T 2ecg_A 27 LCKICMDRNIAIVFVPCGHLVTCK-QCA 53 (75) T ss_dssp SCSSSCSSCCCBCCSSSCCCCBCH-HHH T ss_pred CCCCCCCCCCCEEEECCCCCCCCH-HHH T ss_conf 587598568986995789803298-988 No 13 >1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4 Probab=28.15 E-value=16 Score=18.16 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=12.2 Q ss_pred CCCCEECCCCCCCCCC Q ss_conf 7663044568887877 Q gi|254780469|r 5 DFRSLKSICPECRKGS 20 (63) Q Consensus 5 ~~k~~k~~CP~C~k~~ 20 (63) |-+-|+++||.|++.. T Consensus 2 nS~F~~VkCp~C~n~q 17 (66) T 1qxf_A 2 HSRFVKVKCPDCEHEQ 17 (66) T ss_dssp CCCEEEEECTTTCCEE T ss_pred CCEEEEEECCCCCCEE T ss_conf 8658884999999715 No 14 >1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A Probab=26.87 E-value=19 Score=17.70 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=16.4 Q ss_pred CCCCCCCCEE--CCCCCCCCCC Q ss_conf 9877766304--4568887877 Q gi|254780469|r 1 MQTSDFRSLK--SICPECRKGS 20 (63) Q Consensus 1 m~~~~~k~~k--~~CP~C~k~~ 20 (63) ||.+||+.-+ ++|-.|||+- T Consensus 1 mQrgn~~g~~r~~kCfNCGk~G 22 (55) T 1a1t_A 1 MQKGNFRNQRKTVKCFNCGKEG 22 (55) T ss_dssp CCCGGGGGGGGTCBCTTTCCBS T ss_pred CCCCCCCCCCCCCEEECCCCCC T ss_conf 9877768888764662678815 No 15 >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Probab=26.52 E-value=18 Score=17.78 Aligned_cols=26 Identities=23% Similarity=0.648 Sum_probs=16.2 Q ss_pred CCCCCCCCCCC-------CCCCCHHHHHHHHHH Q ss_conf 56888787778-------868761077744335 Q gi|254780469|r 12 ICPECRKGSMV-------EFYPFCSTQCRSIDL 37 (63) Q Consensus 12 ~CP~C~k~~~~-------~~rPFCS~RC~~iDL 37 (63) .|-.|.+.... .+--|||+.|+..|. T Consensus 51 ~C~~C~~~~~~~~~C~~C~~~~yCs~~C~~~~~ 83 (490) T 3n71_A 51 VCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAW 83 (490) T ss_dssp BCTTTCCBCSCCEECTTTSCCEESSHHHHHHHH T ss_pred HHHHHCCCCCCCCCCCCCCCEEECCHHHHHHHH T ss_conf 101215766777569999815316999999888 No 16 >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=26.27 E-value=19 Score=17.69 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=16.1 Q ss_pred CCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 45688878777886-----876107774433565308983035 Q gi|254780469|r 11 SICPECRKGSMVEF-----YPFCSTQCRSIDLSRWLHGEYVIA 48 (63) Q Consensus 11 ~~CP~C~k~~~~~~-----rPFCS~RC~~iDLg~W~~e~Y~Ip 48 (63) -.||||......+. .-||.. | +.+|+....+=| T Consensus 16 ~~C~IC~~~~~~p~~~~C~H~fC~~-C----i~~~~~~~~~CP 53 (81) T 2csy_A 16 FRCFICRQAFQNPVVTKCRHYFCES-C----ALEHFRATPRCY 53 (81) T ss_dssp SBCSSSCSBCCSEEECTTSCEEEHH-H----HHHHHHHCSBCS T ss_pred CCCCCCCCCCCCCEECCCCCCHHHH-H----HHHHHHCCCCCC T ss_conf 9997687320893784799802499-9----999998199588 No 17 >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Probab=26.06 E-value=18 Score=17.76 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=7.3 Q ss_pred ECCCCCCCCCC Q ss_conf 44568887877 Q gi|254780469|r 10 KSICPECRKGS 20 (63) Q Consensus 10 k~~CP~C~k~~ 20 (63) ...||||.... T Consensus 5 ~~~C~IC~~~~ 15 (55) T 2ecm_A 5 SSGCPICLEDI 15 (55) T ss_dssp CCSCTTTCCCC T ss_pred CCCCEEECCEE T ss_conf 98796668482 No 18 >3pdn_A SET and MYND domain-containing protein 3; rossmann fold, zinc finger, methyltransferase, transferase, transferase-transferase inhibitor complex; HET: SFG; 1.70A {Homo sapiens} PDB: 3mek_A* Probab=25.18 E-value=20 Score=17.56 Aligned_cols=27 Identities=22% Similarity=0.644 Sum_probs=15.6 Q ss_pred CCCCCCCCCCCC-------CCCCCHHHHHHHHHH Q ss_conf 456888787778-------868761077744335 Q gi|254780469|r 11 SICPECRKGSMV-------EFYPFCSTQCRSIDL 37 (63) Q Consensus 11 ~~CP~C~k~~~~-------~~rPFCS~RC~~iDL 37 (63) ..|-.|-+.... .+--|||+.|+.-+. T Consensus 47 ~~C~~C~~~~~~~~~C~~C~~~~yCs~~C~~~~~ 80 (428) T 3pdn_A 47 VVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAW 80 (428) T ss_dssp TBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHH T ss_pred CCCHHHCCCCCCCCCCCCCCEEEECCHHHHHHHH T ss_conf 7030116876667559999802226999988877 No 19 >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Probab=25.17 E-value=10 Score=19.20 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=7.8 Q ss_pred CCCEECCCCCCCCCC Q ss_conf 663044568887877 Q gi|254780469|r 6 FRSLKSICPECRKGS 20 (63) Q Consensus 6 ~k~~k~~CP~C~k~~ 20 (63) ..+....|++|-... T Consensus 3 ~~n~~~~C~IC~~~~ 17 (63) T 2vje_B 3 CQNLLKPCSLCEKRP 17 (63) T ss_dssp CGGGGSBCTTTSSSB T ss_pred CCCCCCCCCCCCCCC T ss_conf 578929693689788 No 20 >3eb5_A Baculoviral IAP repeat-containing protein 3; ring domain, apoptosis, chromosomal rearrangement, cytoplasm, metal-binding, polymorphism, zinc; 2.00A {Homo sapiens} PDB: 3eb6_A Probab=24.95 E-value=15 Score=18.19 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=6.8 Q ss_pred CCCCCCCCCCCCC Q ss_conf 4568887877788 Q gi|254780469|r 11 SICPECRKGSMVE 23 (63) Q Consensus 11 ~~CP~C~k~~~~~ 23 (63) .+||+|++++... T Consensus 56 ~~CP~CR~~i~~~ 68 (74) T 3eb5_A 56 RKCPICRSTIKGT 68 (74) T ss_dssp SBCSSSCCBCCEE T ss_pred CCCCCCCHHHHCE T ss_conf 9897869023336 No 21 >2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A* Probab=24.86 E-value=8 Score=19.82 Aligned_cols=22 Identities=23% Similarity=0.655 Sum_probs=14.4 Q ss_pred ECCCCCCCCCCC---CCCCCC--HHHHHHH Q ss_conf 445688878777---886876--1077744 Q gi|254780469|r 10 KSICPECRKGSM---VEFYPF--CSTQCRS 34 (63) Q Consensus 10 k~~CP~C~k~~~---~~~rPF--CS~RC~~ 34 (63) ..+|| ||+... .++-+| || |+. T Consensus 556 ~~~C~-cg~~~~~~~~k~G~f~gC~--C~~ 582 (633) T 2gai_A 556 NQKCS-CGKEMRLSFGKYGFYLKCE--CGK 582 (633) T ss_dssp EEECT-TSCEEEEEEETTEEEEECS--SSC T ss_pred CCCCC-CCCCEEEEECCCCCEEEEC--CCC T ss_conf 99999-9992488837857769703--898 No 22 >2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens} Probab=23.88 E-value=23 Score=17.19 Aligned_cols=25 Identities=24% Similarity=0.623 Sum_probs=19.0 Q ss_pred ECCCCCCCCCC-----CCCCCCCHHHHHHH Q ss_conf 44568887877-----78868761077744 Q gi|254780469|r 10 KSICPECRKGS-----MVEFYPFCSTQCRS 34 (63) Q Consensus 10 k~~CP~C~k~~-----~~~~rPFCS~RC~~ 34 (63) -..|-.||..- -.+.|-|||.-|.. T Consensus 6 ~A~CE~CG~iGvkhaFYsK~kRFCs~aCsr 35 (43) T 2w0t_A 6 PAVCEMCGIVGTREAFFSKTKRFCSVSCSR 35 (43) T ss_dssp EEECTTTCCEEETTTSCTTTSSSSSHHHHH T ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 548888054231455655222265898754 No 23 >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Probab=23.73 E-value=7.7 Score=19.91 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=17.5 Q ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 0445688878777886876107774433565 Q gi|254780469|r 9 LKSICPECRKGSMVEFYPFCSTQCRSIDLSR 39 (63) Q Consensus 9 ~k~~CP~C~k~~~~~~rPFCS~RC~~iDLg~ 39 (63) |.-.||+|+.+....-.-+.+..|..-|..+ T Consensus 1 m~~~CP~C~~~L~~~~~~l~C~~~h~fd~~k 31 (269) T 1p91_A 1 MSFSCPLCHQPLSREKNSYICPQRHQFDMAK 31 (269) T ss_dssp -CBBCTTTCCBCEEETTEEECTTCCEEEBCT T ss_pred CCEECCCCCCCCCCCCCEEECCCCCCCCCCC T ss_conf 9574889992101689879838995216566 No 24 >2inp_A Phenol hydroxylase component PHN; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_A Probab=23.27 E-value=26 Score=16.92 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=22.2 Q ss_pred CEECCCCCCCCCCC------------------CCCCCCHHHHHHHHHHH Q ss_conf 30445688878777------------------88687610777443356 Q gi|254780469|r 8 SLKSICPECRKGSM------------------VEFYPFCSTQCRSIDLS 38 (63) Q Consensus 8 ~~k~~CP~C~k~~~------------------~~~rPFCS~RC~~iDLg 38 (63) ++-..|=+|+-|.. .+.+.|||+-|+-|.+. T Consensus 389 ~lP~~C~~cqvP~~~~~~~~~~~~~~r~~e~~Gr~y~fcSe~c~wif~~ 437 (494) T 2inp_A 389 TLPQLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFKH 437 (494) T ss_dssp SCBCBCTTTCCBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHC T ss_conf 8988147889862137888765444300134880651268266524521 No 25 >1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding protein; NMR {Synechococcus elongatus pcc 7942} SCOP: g.46.1.1 Probab=23.07 E-value=30 Score=16.55 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=22.4 Q ss_pred CCCEECCCCCCCCCC------CCCCCCCHHHHHHHH Q ss_conf 663044568887877------788687610777443 Q gi|254780469|r 6 FRSLKSICPECRKGS------MVEFYPFCSTQCRSI 35 (63) Q Consensus 6 ~k~~k~~CP~C~k~~------~~~~rPFCS~RC~~i 35 (63) +..||-.|+-|-=.+ +..-+.|||+-|++- T Consensus 3 vt~mKCAC~~C~CvVs~~~Ai~kdGk~YCs~~CA~G 38 (55) T 1jjd_A 3 TTLVKCACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55) T ss_dssp -CCBCCSSTTCCCCBCTTTSEESSSCEESSHHHHHT T ss_pred EEEEEECCCCCEEEEEHHHHHHHCCCEEECHHHHCC T ss_conf 478886178837884089988655840565355578 No 26 >2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Probab=21.16 E-value=35 Score=16.19 Aligned_cols=30 Identities=17% Similarity=0.500 Sum_probs=21.2 Q ss_pred ECCCCCCCCCCCC-----CCCCCHHHHHHHHHHHH Q ss_conf 4456888787778-----86876107774433565 Q gi|254780469|r 10 KSICPECRKGSMV-----EFYPFCSTQCRSIDLSR 39 (63) Q Consensus 10 k~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg~ 39 (63) ...|..|+++... ..--+||+.|+..|-.. T Consensus 17 ~~~C~~Cg~~~~~~Cs~C~~~~YCs~~CQ~~~W~~ 51 (64) T 2odd_A 17 SESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK 51 (64) T ss_dssp SSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHH T ss_conf 87775689521084899999821699999999999 No 27 >2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Probab=20.74 E-value=38 Score=15.99 Aligned_cols=31 Identities=26% Similarity=0.577 Sum_probs=21.5 Q ss_pred CCEECCCCCCCCCCCC-----CCCCCHHHHHHHHHH Q ss_conf 6304456888787778-----868761077744335 Q gi|254780469|r 7 RSLKSICPECRKGSMV-----EFYPFCSTQCRSIDL 37 (63) Q Consensus 7 k~~k~~CP~C~k~~~~-----~~rPFCS~RC~~iDL 37 (63) ......|-.|++++.. ..--+||+.|+..|- T Consensus 6 ~~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~dW 41 (52) T 2jw6_A 6 ERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDW 41 (52) T ss_dssp -----CCSSSSSSCSEECTTTCSSEESSHHHHHHHT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHH T ss_conf 468883778996403748999967778899999999 No 28 >2waq_P DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P Probab=20.58 E-value=28 Score=16.70 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=7.8 Q ss_pred CCCCCCCCCCCCC Q ss_conf 4568887877788 Q gi|254780469|r 11 SICPECRKGSMVE 23 (63) Q Consensus 11 ~~CP~C~k~~~~~ 23 (63) ++||.||=-+-.+ T Consensus 24 IrCPyCGfri~~k 36 (48) T 2waq_P 24 VRCPYCGYKIIFM 36 (48) T ss_dssp SSCTTTCCCCEEC T ss_pred CCCCCCCCEEEEE T ss_conf 6446357189998 Done!