Query gi|254780469|ref|YP_003064882.1| zinc-binding protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 63 No_of_seqs 121 out of 410 Neff 4.0 Searched_HMMs 13730 Date Wed Jun 1 05:46:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780469.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1lv3a_ g.39.1.9 (A:) Hypothet 99.9 9.6E-24 7E-28 153.9 3.4 52 7-58 3-58 (65) 2 d2cu8a1 g.39.1.3 (A:8-37) Cyst 50.3 2.5 0.00018 21.3 1.1 12 9-20 1-12 (30) 3 d2dasa1 g.39.1.17 (A:8-56) Zin 44.6 4.8 0.00035 19.7 1.7 29 5-33 8-45 (49) 4 d2apob1 g.41.16.1 (B:403-457) 43.8 4.3 0.00031 20.0 1.4 15 8-22 14-28 (55) 5 d2ey4e1 g.41.16.1 (E:4-55) Rib 37.3 4.6 0.00033 19.8 0.7 15 8-22 12-26 (52) 6 d2inca1 a.25.1.2 (A:2-492) Tol 32.7 10 0.00075 17.8 1.9 32 7-38 390-438 (491) 7 d1ur6b_ g.44.1.1 (B:) Not-4 N- 30.0 11 0.00077 17.8 1.6 32 12-43 2-37 (52) 8 d1yuza2 g.41.5.1 (A:167-202) N 29.5 7.8 0.00057 18.5 0.8 11 11-21 21-31 (36) 9 d2aqaa1 g.41.16.1 (A:2-58) H/a 29.0 11 0.0008 17.7 1.5 18 5-23 12-29 (57) 10 d1nnqa2 g.41.5.1 (A:135-171) R 26.4 9.5 0.00069 18.0 0.8 10 11-20 21-30 (37) 11 d2dlqa4 g.37.1.1 (A:8-34) GLI- 24.4 8 0.00058 18.5 0.2 14 11-24 1-14 (27) 12 d2dj8a1 g.85.1.1 (A:8-54) Zinc 24.4 20 0.0014 16.2 2.2 34 5-38 3-41 (47) 13 d2pw4a1 d.380.1.1 (A:1-184) Un 23.1 21 0.0015 16.0 2.1 29 7-35 141-175 (184) 14 d1ob1c2 g.3.11.4 (C:46-96) Mer 23.1 9.7 0.0007 18.0 0.4 26 4-30 22-49 (51) 15 d1qxfa_ g.41.8.4 (A:) Ribosoma 23.0 13 0.00094 17.3 1.0 15 6-20 3-17 (58) 16 d1e7la2 d.4.1.5 (A:1-103) Reco 20.9 11 0.00081 17.6 0.3 18 11-28 21-38 (103) 17 d2jnea1 g.41.18.1 (A:1-71) Hyp 20.4 8 0.00058 18.5 -0.5 15 9-23 1-15 (71) 18 d2dana1 g.85.1.1 (A:8-54) Zinc 20.4 25 0.0018 15.6 2.0 29 10-38 8-41 (47) 19 d2jw6a1 g.85.1.1 (A:503-540) Z 20.4 18 0.0013 16.4 1.3 21 11-37 11-31 (38) 20 d1jjda_ g.46.1.1 (A:) Cyanobac 20.1 21 0.0015 16.1 1.6 28 8-35 2-35 (52) No 1 >d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]} Probab=99.87 E-value=9.6e-24 Score=153.88 Aligned_cols=52 Identities=33% Similarity=0.733 Sum_probs=45.4 Q ss_pred CCEECCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH Q ss_conf 63044568887877----78868761077744335653089830357888866871 Q gi|254780469|r 7 RSLKSICPECRKGS----MVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEE 58 (63) Q Consensus 7 k~~k~~CP~C~k~~----~~~~rPFCS~RC~~iDLg~W~~e~Y~Ip~~~~~~~~~e 58 (63) +.++++||+|+|++ +++||||||+||++||||+||+|+|+||+.+.++.+++ T Consensus 3 ~~~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~W~~e~y~Ip~~~~~~~~~~ 58 (65) T d1lv3a_ 3 ETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDD 58 (65) T ss_dssp CCCEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSCSSSSSCCCCSSSCCSSSCS T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCC T ss_conf 87350488999834457778858725476600508788667812578887776667 No 2 >d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]} Probab=50.33 E-value=2.5 Score=21.29 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=10.1 Q ss_pred EECCCCCCCCCC Q ss_conf 044568887877 Q gi|254780469|r 9 LKSICPECRKGS 20 (63) Q Consensus 9 ~k~~CP~C~k~~ 20 (63) |..+||.|+|++ T Consensus 1 M~~~CprC~K~V 12 (30) T d2cu8a1 1 MASKCPKCDKTV 12 (30) T ss_dssp CCCBCTTTCCBC T ss_pred CCCCCCCCCCCE T ss_conf 987577888815 No 3 >d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]} Probab=44.63 E-value=4.8 Score=19.72 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=21.8 Q ss_pred CCCCEECCCCCCCCCCC---------CCCCCCHHHHHH Q ss_conf 76630445688878777---------886876107774 Q gi|254780469|r 5 DFRSLKSICPECRKGSM---------VEFYPFCSTQCR 33 (63) Q Consensus 5 ~~k~~k~~CP~C~k~~~---------~~~rPFCS~RC~ 33 (63) ..++.++.|-.|+|+.. .-..=|||..|- T Consensus 8 p~~a~~v~Ca~Ckk~lqKGQTAyqrkGs~~LFCSt~Cl 45 (49) T d2dasa1 8 LTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL 45 (49) T ss_dssp CSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH T ss_pred CCCCEEEEECCCCHHHHCCCHHHHHCCCCCEEECCHHH T ss_conf 98760767011435776553477647872146761043 No 4 >d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=43.77 E-value=4.3 Score=19.99 Aligned_cols=15 Identities=40% Similarity=1.110 Sum_probs=11.2 Q ss_pred CEECCCCCCCCCCCC Q ss_conf 304456888787778 Q gi|254780469|r 8 SLKSICPECRKGSMV 22 (63) Q Consensus 8 ~~k~~CP~C~k~~~~ 22 (63) +++..||.||..+.+ T Consensus 14 TL~~~CP~CG~~t~~ 28 (55) T d2apob1 14 TLKEICPKCGEKTVI 28 (55) T ss_dssp ESSSBCSSSCSBCBC T ss_pred ECCCCCCCCCCCCCC T ss_conf 334527678886576 No 5 >d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=37.29 E-value=4.6 Score=19.82 Aligned_cols=15 Identities=40% Similarity=0.961 Sum_probs=11.1 Q ss_pred CEECCCCCCCCCCCC Q ss_conf 304456888787778 Q gi|254780469|r 8 SLKSICPECRKGSMV 22 (63) Q Consensus 8 ~~k~~CP~C~k~~~~ 22 (63) +++..||.||..+.+ T Consensus 12 TL~~~CP~CG~~t~~ 26 (52) T d2ey4e1 12 TLKEVCPVCGEKTKV 26 (52) T ss_dssp ESSSBCTTTCCBCEE T ss_pred ECCCCCCCCCCCCCC T ss_conf 444528678885566 No 6 >d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Probab=32.67 E-value=10 Score=17.82 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=22.1 Q ss_pred CCEECCCCCCCCCCC-----------------CCCCCCHHHHHHHHHHH Q ss_conf 630445688878777-----------------88687610777443356 Q gi|254780469|r 7 RSLKSICPECRKGSM-----------------VEFYPFCSTQCRSIDLS 38 (63) Q Consensus 7 k~~k~~CP~C~k~~~-----------------~~~rPFCS~RC~~iDLg 38 (63) .++-..|=+|+-|.. .+-+-|||+-|+.|-.. T Consensus 390 ~~lp~~C~~cq~P~~~~~~~~~~~~~~~~~~~G~~~~fcs~~c~~if~~ 438 (491) T d2inca1 390 ETLPTICNMCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQI 438 (491) T ss_dssp SSCBCBCTTTCSBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCHHHHHHHHC T ss_conf 8888744257887311888766443102467782530157567777741 No 7 >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Probab=30.04 E-value=11 Score=17.75 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=12.5 Q ss_pred CCCCCCCCCC---CCCCC-CHHHHHHHHHHHHHCCC Q ss_conf 5688878777---88687-61077744335653089 Q gi|254780469|r 12 ICPECRKGSM---VEFYP-FCSTQCRSIDLSRWLHG 43 (63) Q Consensus 12 ~CP~C~k~~~---~~~rP-FCS~RC~~iDLg~W~~e 43 (63) .||||-...+ ...++ =|+-..-.-=|.+|+.. T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~ 37 (52) T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD 37 (52) T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTT T ss_pred CCCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHH T ss_conf 995878235189825986699770455899999966 No 8 >d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Probab=29.46 E-value=7.8 Score=18.51 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=6.9 Q ss_pred CCCCCCCCCCC Q ss_conf 45688878777 Q gi|254780469|r 11 SICPECRKGSM 21 (63) Q Consensus 11 ~~CP~C~k~~~ 21 (63) -+||+|+.+.+ T Consensus 21 e~CPvCg~~~~ 31 (36) T d1yuza2 21 EKCPICFRPKD 31 (36) T ss_dssp SBCTTTCCBGG T ss_pred CCCCCCCCCHH T ss_conf 84888998689 No 9 >d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=28.97 E-value=11 Score=17.66 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=13.0 Q ss_pred CCCCEECCCCCCCCCCCCC Q ss_conf 7663044568887877788 Q gi|254780469|r 5 DFRSLKSICPECRKGSMVE 23 (63) Q Consensus 5 ~~k~~k~~CP~C~k~~~~~ 23 (63) ..=+++..|| ||+++.+. T Consensus 12 rvYTLkk~~p-~G~~T~sa 29 (57) T d2aqaa1 12 RIYTLKKVTE-SGEITKSA 29 (57) T ss_dssp EECCCCCSSC-CCCCCCSS T ss_pred EEEEEECCCC-CCCCCCCC T ss_conf 8788402388-99812565 No 10 >d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=26.43 E-value=9.5 Score=18.03 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=5.8 Q ss_pred CCCCCCCCCC Q ss_conf 4568887877 Q gi|254780469|r 11 SICPECRKGS 20 (63) Q Consensus 11 ~~CP~C~k~~ 20 (63) .+||+|+.+. T Consensus 21 ~~CPvCg~~~ 30 (37) T d1nnqa2 21 EYCPVCGAPK 30 (37) T ss_dssp SBCTTTCCBG T ss_pred CCCCCCCCCH T ss_conf 8488899857 No 11 >d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} Probab=24.43 E-value=8 Score=18.46 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=10.2 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 45688878777886 Q gi|254780469|r 11 SICPECRKGSMVEF 24 (63) Q Consensus 11 ~~CP~C~k~~~~~~ 24 (63) +.||+|.|....+| T Consensus 1 vqcp~c~k~f~sky 14 (27) T d2dlqa4 1 VECPTCHKKFLSKY 14 (27) T ss_dssp CCCTTTCCCCSSHH T ss_pred CCCCCHHHHHHHHH T ss_conf 95761478888767 No 12 >d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Probab=24.42 E-value=20 Score=16.21 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=23.4 Q ss_pred CCCCEECCCCCCCCCCCC-----CCCCCHHHHHHHHHHH Q ss_conf 766304456888787778-----8687610777443356 Q gi|254780469|r 5 DFRSLKSICPECRKGSMV-----EFYPFCSTQCRSIDLS 38 (63) Q Consensus 5 ~~k~~k~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg 38 (63) +-......|-.|++++.. ..--+||+-|+..|-. T Consensus 3 ~~~~~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~dW~ 41 (47) T d2dj8a1 3 QQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE 41 (47) T ss_dssp CCCCCSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHH T ss_conf 011578847799962036389999866379899999999 No 13 >d2pw4a1 d.380.1.1 (A:1-184) Uncharacterized protein Jann2411 {Jannaschia sp. ccs1 [TaxId: 290400]} Probab=23.14 E-value=21 Score=16.04 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=21.4 Q ss_pred CCEECCC--CCCCCC----CCCCCCCCHHHHHHHH Q ss_conf 6304456--888787----7788687610777443 Q gi|254780469|r 7 RSLKSIC--PECRKG----SMVEFYPFCSTQCRSI 35 (63) Q Consensus 7 k~~k~~C--P~C~k~----~~~~~rPFCS~RC~~i 35 (63) ...-..| |.|+-. +.|.-|=|||.+|..- T Consensus 141 ~~RLr~C~ap~C~~vF~D~Srn~~RRwCSm~CGNR 175 (184) T d2pw4a1 141 VRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQNR 175 (184) T ss_dssp GGGEEECCSTTCCCEEECCSSSCCCCCSSHHHHHH T ss_pred HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCH T ss_conf 45405479999875877589999877568531089 No 14 >d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Probab=23.10 E-value=9.7 Score=17.98 Aligned_cols=26 Identities=35% Similarity=0.632 Sum_probs=17.7 Q ss_pred CCCCCEECCCCCCCCCCCCCCC--CCHHH Q ss_conf 7766304456888787778868--76107 Q gi|254780469|r 4 SDFRSLKSICPECRKGSMVEFY--PFCST 30 (63) Q Consensus 4 ~~~k~~k~~CP~C~k~~~~~~r--PFCS~ 30 (63) +.-.+.|+.| +|.++..++++ -|||- T Consensus 22 ~~~~skkIvC-~Ck~p~~~~~~~GVFCS~ 49 (51) T d1ob1c2 22 SGSNGKKITC-ECTKPDSYPLFDGIFCSH 49 (51) T ss_dssp CSSSSCCCEE-EECSTTCCEEGGGTEECC T ss_pred CCCCCCEEEE-EECCCCCCCCCCEEEEEC T ss_conf 7777535899-826899874300477501 No 15 >d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=22.96 E-value=13 Score=17.29 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=11.5 Q ss_pred CCCEECCCCCCCCCC Q ss_conf 663044568887877 Q gi|254780469|r 6 FRSLKSICPECRKGS 20 (63) Q Consensus 6 ~k~~k~~CP~C~k~~ 20 (63) -+-|+++||-|++.. T Consensus 3 S~F~~VkC~~C~n~~ 17 (58) T d1qxfa_ 3 SRFVKVKCPDCEHEQ 17 (58) T ss_dssp CCEEEEECTTTCCEE T ss_pred CEEEEEECCCCCCEE T ss_conf 656895999999867 No 16 >d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII, N-terminal domain {Bacteriophage T4 [TaxId: 10665]} Probab=20.85 E-value=11 Score=17.63 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=11.0 Q ss_pred CCCCCCCCCCCCCCCCCH Q ss_conf 456888787778868761 Q gi|254780469|r 11 SICPECRKGSMVEFYPFC 28 (63) Q Consensus 11 ~~CP~C~k~~~~~~rPFC 28 (63) .+||+|+.+.......++ T Consensus 21 g~C~IC~~~~~~~~~~~~ 38 (103) T d1e7la2 21 GKCLICQRELNPDVQANH 38 (103) T ss_dssp TBCTTTCCBCCSSGGGSE T ss_pred CCCCCCCCCCCCCCCCCE T ss_conf 917788997666665321 No 17 >d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} Probab=20.44 E-value=8 Score=18.46 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=8.7 Q ss_pred EECCCCCCCCCCCCC Q ss_conf 044568887877788 Q gi|254780469|r 9 LKSICPECRKGSMVE 23 (63) Q Consensus 9 ~k~~CP~C~k~~~~~ 23 (63) |...||.|+.+.+.. T Consensus 1 m~~~CP~C~~eL~~~ 15 (71) T d2jnea1 1 MELHCPQCQHVLDQD 15 (71) T ss_dssp CCCBCSSSCSBEEEE T ss_pred CCCCCCCCCCCCCCC T ss_conf 978688755731025 No 18 >d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Probab=20.43 E-value=25 Score=15.64 Aligned_cols=29 Identities=14% Similarity=0.424 Sum_probs=21.3 Q ss_pred ECCCCCCCCCCCC-----CCCCCHHHHHHHHHHH Q ss_conf 4456888787778-----8687610777443356 Q gi|254780469|r 10 KSICPECRKGSMV-----EFYPFCSTQCRSIDLS 38 (63) Q Consensus 10 k~~CP~C~k~~~~-----~~rPFCS~RC~~iDLg 38 (63) ..+|-.|++++.. ..--+||+-|+..|-. T Consensus 8 ~~~C~~Cg~~~~~~Cs~C~~~~YCs~~CQ~~dW~ 41 (47) T d2dana1 8 RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWE 41 (47) T ss_dssp CCCCSSSCCCCCEECTTTSCSEESSHHHHHHTHH T ss_pred CCCCCCCCCHHHCCCCCCCCEEECCHHHHHHHHH T ss_conf 7967588970432278999872578999999999 No 19 >d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Probab=20.37 E-value=18 Score=16.43 Aligned_cols=21 Identities=43% Similarity=0.904 Sum_probs=14.9 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 456888787778868761077744335 Q gi|254780469|r 11 SICPECRKGSMVEFYPFCSTQCRSIDL 37 (63) Q Consensus 11 ~~CP~C~k~~~~~~rPFCS~RC~~iDL 37 (63) .+|..|+. -.+||+.|+..|- T Consensus 11 ~~C~~C~~------~~YCs~~CQ~~~W 31 (38) T d2jw6a1 11 SECTGCHK------VNYCSTFCQRKDW 31 (38) T ss_dssp EECTTTCS------SEESSHHHHHHHT T ss_pred CCCCCCCC------EEECCHHHHHHHH T ss_conf 63889999------7248999999999 No 20 >d1jjda_ g.46.1.1 (A:) Cyanobacterial metallothionein SmtA {Synechococcus sp., PCC 7942 [TaxId: 1131]} Probab=20.11 E-value=21 Score=16.11 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=20.8 Q ss_pred CEECCCCCCCCCC------CCCCCCCHHHHHHHH Q ss_conf 3044568887877------788687610777443 Q gi|254780469|r 8 SLKSICPECRKGS------MVEFYPFCSTQCRSI 35 (63) Q Consensus 8 ~~k~~CP~C~k~~------~~~~rPFCS~RC~~i 35 (63) .||-.|+-|-=.+ +..-+.|||+-|++- T Consensus 2 ~~kCAC~~C~C~Vs~~~Ai~kdGk~YCs~~CA~G 35 (52) T d1jjda_ 2 LVKCACEPCLCNVDPSKAIDRNGLYYCSEACADG 35 (52) T ss_dssp CBCCSSTTCCCCBCTTTSEESSSCEESSHHHHHT T ss_pred CCEECCCCCEEEECHHHHHHHCCCEEECHHHHCC T ss_conf 6226588847884089988655840465355578 Done!