RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780469|ref|YP_003064882.1| zinc-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>gnl|CDD|146490 pfam03884, DUF329, Domain of unknown function (DUF329).  The
          function of this short domain is unknown it contains
          four conserved cysteines and may therefore be involved
          in zinc binding.
          Length = 57

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 13 CPECRK----GSMVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEE 58
          CP C K         F PFCS +C+ IDL  W   EY I    D++ EE 
Sbjct: 5  CPTCGKPVVWSEENPFRPFCSERCKLIDLGAWASEEYRIPGEPDDEDEES 54


>gnl|CDD|32840 COG3024, COG3024, Uncharacterized protein conserved in bacteria
          [Function unknown].
          Length = 65

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 13 CPECRK----GSMVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEEVKD 61
          CP C K    G    F PFCS +C+ IDL  W   EY I    ++   ++  +
Sbjct: 10 CPTCGKPVVWGEESPFRPFCSKRCKLIDLGEWAAEEYAIPDETEDSDSDDWSE 62


>gnl|CDD|112637 pfam03833, PolC_DP2, DNA polymerase II large subunit DP2. 
          Length = 852

 Score = 27.4 bits (61), Expect = 0.96
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 13  CPECRKGSMVEFYPFCSTQC--------RSIDLSRWLHGEYVIAAVEDEKSEEEVKDI 62
           CP C K S     P C ++         R IDLS  L     +  +   K  +E+K +
Sbjct: 632 CPSCGKESPESTCPKCGSRERKLDGYGKRKIDLSDLLRR--ALENLGIRKDLDELKGV 687


>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain.  Aconitase A
           catalytic domain. This is the major form of the TCA
           cycle enzyme aconitate hydratase, also known as
           aconitase and citrate hydrolyase. It includes bacterial
           and archaeal aconitase A, and the eukaryotic cytosolic
           form of aconitase. This group also includes sequences
           that have been shown to act as an iron-responsive
           element (IRE) binding protein in animals and may have
           the same role in other eukaryotes.
          Length = 404

 Score = 25.3 bits (56), Expect = 3.3
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 18/53 (33%)

Query: 13  CPECRKGSMVEFYPFCSTQCRSIDLS---------------RWLHGEYVIAAV 50
            PE   G+   F+P   TQ   +DLS                 LHG  VIAA+
Sbjct: 223 APE--YGATCGFFPV-DTQVVELDLSTVEPSVSGPKRPQDRVPLHGSVVIAAI 272


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 759,175
Number of extensions: 28208
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 6
Length of query: 63
Length of database: 6,263,737
Length adjustment: 35
Effective length of query: 28
Effective length of database: 5,507,422
Effective search space: 154207816
Effective search space used: 154207816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)