RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780469|ref|YP_003064882.1| zinc-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>gnl|CDD|167213 PRK01343, PRK01343, zinc-binding protein; Provisional.
          Length = 57

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 28/46 (60%), Positives = 32/46 (69%)

Query: 13 CPECRKGSMVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEE 58
          CPEC K S  E YPFCS +CR IDL+RWL G YVI    DE+ +EE
Sbjct: 12 CPECGKPSTREAYPFCSERCRDIDLNRWLSGSYVIPGAPDEEDDEE 57


>gnl|CDD|179015 PRK00418, PRK00418, DNA gyrase inhibitor; Reviewed.
          Length = 62

 Score = 33.9 bits (78), Expect = 0.010
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 13 CPECRK----GSMVEFYPFCSTQCRSIDLSRWLHGEYVIA-AVEDEKSEEEVKD 61
          CP C K    G +  F PFCS +C+ IDL  W   E  I  + +  +S++  ++
Sbjct: 9  CPTCGKPVEWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDWSEE 62


>gnl|CDD|161834 TIGR00354, polC, DNA polymerase, archaeal type II, large subunit.
           This model represents the large subunit, DP2, of a two
           subunit novel Archaeal replicative DNA polymerase first
           characterized for Pyrococcus furiosus. Structure of DP2
           appears to be organized as a ~950 residue component
           separated from a ~300 residue component by a ~150
           residue intein. The other subunit, DP1, has sequence
           similarity to the eukaryotic DNA polymerase delta small
           subunit.
          Length = 1095

 Score = 25.6 bits (56), Expect = 2.7
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 13  CPECRKGSMVEFYPFCST 30
           CP+C K S     P C  
Sbjct: 628 CPQCGKESFWLKCPVCGE 645


>gnl|CDD|172782 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
          Length = 366

 Score = 25.1 bits (55), Expect = 4.0
 Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 2   QTSDFRSLKSICPECR-KGSMVE 23
           Q+  F S+++ CP CR  G ++ 
Sbjct: 175 QSQGFFSIRTTCPRCRGMGKVIV 197


>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional.
          Length = 815

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 35  IDLSRWLHGEYVIAAVEDEKSEEEVKDIL 63
           I+L ++  G+Y  AAVED+   E V  +L
Sbjct: 242 INLGKFNQGDY-FAAVEDKNHSENVSRVL 269


>gnl|CDD|152526 pfam12091, DUF3567, Protein of unknown function (DUF3567).  This
          family of proteins is functionally uncharacterized.
          This protein is found in bacteria. Proteins in this
          family are about 90 amino acids in length. This protein
          has a conserved EIVDK sequence motif.
          Length = 85

 Score = 24.6 bits (54), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 44 EYVIAAVEDEKSEEEVKDIL 63
          E V A +EDE ++EEV D L
Sbjct: 52 EDVKALIEDEPTQEEVDDFL 71


>gnl|CDD|181267 PRK08173, PRK08173, DNA topoisomerase III; Validated.
          Length = 862

 Score = 24.6 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 5   DFRSLKSICPECRKGSMVEFYP-FCSTQC 32
           D+ +L++ CP C  G + E Y  F  T+C
Sbjct: 619 DYATLQTPCPNC-GGVVKENYRRFACTKC 646


>gnl|CDD|179686 PRK03958, PRK03958, tRNA 2'-O-methylase; Reviewed.
          Length = 176

 Score = 24.1 bits (53), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 38 SRWLHGEYVIAAVEDEKSEEEVKDI 62
          +R L  + +I A  DE  +E V+DI
Sbjct: 26 ARALGADKIILASNDEHVKESVEDI 50


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 961,597
Number of extensions: 40804
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 13
Length of query: 63
Length of database: 5,994,473
Length adjustment: 35
Effective length of query: 28
Effective length of database: 5,238,193
Effective search space: 146669404
Effective search space used: 146669404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)