RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780469|ref|YP_003064882.1| zinc-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4
          tetrahedral Zn+2, antiparallel beta strand and alpha
          helix, NESG project; NMR {Escherichia coli} SCOP:
          g.39.1.9
          Length = 68

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 13 CPECRK----GSMVEFYPFCSTQCRSIDLSRWLHGEYVIAAVEDEKSEEE 58
          CP C K    G +  F PFCS +C+ IDL  W   E  I +  D    ++
Sbjct: 12 CPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDD 61


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.2 bits (73), Expect = 0.026
 Identities = 4/51 (7%), Positives = 15/51 (29%), Gaps = 18/51 (35%)

Query: 6   FRSLKSICPECRKGSMVEFYPFCSTQCRSIDLSRWLHG-------EYVIAA 49
              L        +    + +       + +++  WL         +Y+++ 
Sbjct: 195 LSEL-IRTTLDAE----KVFT------QGLNILEWLENPSNTPDKDYLLSI 234


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 31.0 bits (70), Expect = 0.058
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 14/46 (30%)

Query: 8  SLKSICPECRKGS--MVEFYP----FCSTQC------RSIDL-SRW 40
          ++   CPEC+     +VE +      C   C      + +D  S W
Sbjct: 19 NIVLTCPECKVYPPKIVERFSEGDVVC-ALCGLVLSDKLVDTRSEW 63


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 544,588
Number of extensions: 18394
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 8
Length of query: 63
Length of database: 5,693,230
Length adjustment: 34
Effective length of query: 29
Effective length of database: 4,868,934
Effective search space: 141199086
Effective search space used: 141199086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)