HHsearch alignment for GI: 254780470 and conserved domain: PRK04012
>PRK04012 translation initiation factor IF-1A; Provisional.
Probab=98.33 E-value=4.3e-06 Score=56.59 Aligned_cols=65 Identities=31% Similarity=0.473 Sum_probs=58.4
Q ss_pred EEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEE
Q ss_conf 99978999815898179998166776533323354433344555544455555445556882899991251120164770
Q gi|254780470|r 7 LEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRIS 86 (110)
Q Consensus 7 ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl 86 (110)
T Consensus 20 ~e~yg~V~k~lG~~r~~v~C--------------------------------------~Dg~~R~~~I~Gkmrk-r~WI~ 60 (99)
T PRK04012 20 GEVFGVVEQMLGANRVRVRC--------------------------------------MDGVERMGRIPGKMKK-RMWIR 60 (99)
T ss_pred CEEEEEEEECCCCCEEEEEE--------------------------------------CCCCEEEEEECCCCCC-CEEEE
T ss_conf 86999991061994299994--------------------------------------8999999997687512-34972
Q ss_pred CCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 299699997467578435988429
Q gi|254780470|r 87 LGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 87 ~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
T Consensus 61 ~gDiVLV~~refqd~K~DIi~kY~ 84 (99)
T PRK04012 61 EGDVVIVAPWDFQDEKADIIWRYT 84 (99)
T ss_pred CCCEEEEEEECCCCCEEEEEEECC
T ss_conf 799999985546686187999669