HHsearch alignment for GI: 254780470 and conserved domain: cd01854
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=93.85 E-value=0.21 Score=29.38 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=33.3
Q ss_pred CCEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 8289999125112016477029969999746757843598842
Q gi|254780470|r 67 NAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 67 ~~~VlA~isGKmRk~~IRIl~GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
T Consensus 17 ~~~~~~~~rg~~~~~~~~~~VGD~V~~~~~--~~~~g~I~~i~ 57 (287)
T cd01854 17 GGELRCRARGKLRKKGIKPVVGDWVEVEPD--DDGEGVIVRVL 57 (287)
T ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEC--CCCEEEEEEEE
T ss_conf 969999980010567999634659999974--79808999994