HHsearch alignment for GI: 254780470 and conserved domain: cd04466
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=96.51 E-value=0.0076 Score=37.73 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=45.0
Q ss_pred EEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECC
Q ss_conf 97899981589817999816677653332335443334455554445555544555688289999125112016477029
Q gi|254780470|r 9 FSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISLG 88 (110)
Q Consensus 9 ~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~G 88 (110)
T Consensus 1 m~G~Vi~~~g-~~y~V~~--------------------------------------~~g~~~~c~~RG~~r~~~~~~~vG 41 (68)
T cd04466 1 MEGLIIKAIG-GFYYVET--------------------------------------EDGKIYECRLRGKFRKDKNPPAVG 41 (68)
T ss_pred CEEEEEEEEC-CEEEEEE--------------------------------------CCCCEEEEEEEEEECCCCCCCCCC
T ss_conf 9799999999-9999993--------------------------------------999799999734791579998642
Q ss_pred CEEEEEECCCCCCCCEEEEE
Q ss_conf 96999974675784359884
Q gi|254780470|r 89 DKVKVAMNPYDMTRARITYR 108 (110)
Q Consensus 89 DkV~Ve~SPYDLtkGRItyR 108 (110)
T Consensus 42 D~V~~~~~~--~~~g~I~~i 59 (68)
T cd04466 42 DRVEFEPED--DGEGVIEEI 59 (68)
T ss_pred EEEEEEECC--CCEEEEEEE
T ss_conf 399999998--996999899