HHsearch results for GI: 254780470 and protein with PDBid: 1d7q_A
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.10 E-value=2.1e-10 Score=80.34 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=60.1
Q ss_pred CEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf 45999789998158981799981667765333233544333445555444555554455568828999912511201647
Q gi|254780470|r 5 ETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIR 84 (110)
Q Consensus 5 d~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IR 84 (110)
+--|+-|+|+++|+|++|.|... +|...+|++.||||+ +++
T Consensus 29 ee~e~y~~V~k~lG~~~~~V~~~--------------------------------------dg~~rl~~irgk~rk-r~~ 69 (143)
T 1d7q_A 29 EDGQEYAQVIKMLGNGRLEAMCF--------------------------------------DGVKRLCHIRGKLRK-KVW 69 (143)
T ss_dssp CTTEEEEEEEEECSSSEEEEEET--------------------------------------TTEEEEEECCSGGGG-SCC
T ss_pred CCCEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEEECCCCEE-EEE
T ss_conf 99818999999749977999978--------------------------------------999999996552200-137
Q ss_pred EECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 70299699997467578435988429
Q gi|254780470|r 85 ISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 85 Il~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
|.+||-|.|++.+|+.+|+.|+|+|.
T Consensus 70 i~~Gd~VlV~~r~~~~~k~DIl~~Y~ 95 (143)
T 1d7q_A 70 INTSDIILVGLRDYQDNKADVILKYN 95 (143)
T ss_dssp CCTTCEEEEECSSSSSSCCEEEEEEC
T ss_pred ECCCCEEEEECCCCCCCEEEEEEECC
T ss_conf 53899999943678686899999779