HHsearch results for GI: 254780470 and protein with PDBid: 1jt8_A
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=99.30 E-value=7.4e-13 Score=94.63 Aligned_cols=71 Identities=27% Similarity=0.488 Sum_probs=64.4
Q ss_pred CCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
Q ss_conf 97564599978999815898179998166776533323354433344555544455555445556882899991251120
Q gi|254780470|r 1 MPKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRK 80 (110)
Q Consensus 1 M~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk 80 (110)
||+++-.|+-|+|+++|+|++|+|.+. ||...+|++.||||+
T Consensus 14 lp~~ee~e~y~~V~k~lG~~~~~V~c~--------------------------------------dg~~rl~~irGK~Rk 55 (102)
T 1jt8_A 14 IPRKEENEILGIIEQMLGASRVRVRCL--------------------------------------DGKTRLGRIPGRLKN 55 (102)
T ss_dssp CSCCSSCCEEEEEECSSCSSEEEEEEE--------------------------------------TTEEEEEECCHHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEEECCCCCC
T ss_conf 799978989999999839988999979--------------------------------------999999998666111
Q ss_pred EEEEEECCCEEEEEECCCCC-CCCEEEEEEC
Q ss_conf 16477029969999746757-8435988429
Q gi|254780470|r 81 HRIRISLGDKVKVAMNPYDM-TRARITYRFK 110 (110)
Q Consensus 81 ~~IRIl~GDkV~Ve~SPYDL-tkGRItyR~K 110 (110)
+++|.+||.|.|++++|+. +||+|+|||.
T Consensus 56 -~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~ 85 (102)
T 1jt8_A 56 -RIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85 (102)
T ss_dssp -HHCCCSCEEEEECCBCCTTSEEEEEEEESS
T ss_pred -CEEECCCCEEEEEEEECCCCCEEEEEEECC
T ss_conf -249649999999972178996699999989