HHSEARCH alignment of GI: 254780470 and SCOP domain: d1ah9a_

Alignment
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=99.94  E-value=3.8e-28  Score=182.14  Aligned_cols=71  Identities=48%  Similarity=0.793  Sum_probs=68.8

Q ss_pred             CCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf             75645999789998158981799981667765333233544333445555444555554455568828999912511201
Q gi|254780470|r    2 PKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKH   81 (110)
Q Consensus         2 ~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~   81 (110)
                      ||||.||++|+|+|+|||++|+|+|                                      +||+.++||+|||||++
T Consensus         1 aKed~ie~~G~V~e~lg~~~f~V~l--------------------------------------~ng~~~~a~i~Gkmrk~   42 (71)
T d1ah9a_           1 AKEDNIEMQGTVLETLPNTMFRVEL--------------------------------------ENGHVVTAHISGKMRKN   42 (71)
T ss_dssp             CCSCCEECCEEEEEECSSSEEEEEE--------------------------------------TTSCEEEEEECSSGGGT
T ss_pred             CCCCCEEEEEEEEEECCCCEEEEEE--------------------------------------CCCCEEEEECCCHHHEE
T ss_conf             9863189999999986998899996--------------------------------------79979999846434302


Q ss_pred             EEEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf             64770299699997467578435988429
Q gi|254780470|r   82 RIRISLGDKVKVAMNPYDMTRARITYRFK  110 (110)
Q Consensus        82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR~K  110 (110)
                      +|+|++||+|.|||||||++||||+||||
T Consensus        43 ri~i~~GD~V~Vel~pyd~~kgrIi~R~k   71 (71)
T d1ah9a_          43 YIRILTGDKVTVELTPYDLSKGRIVFRSR   71 (71)
T ss_dssp             TCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred             EEEECCCCEEEEEECCCCCCCEEEEEECC
T ss_conf             79964999999997766799388999749


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]