HHsearch alignment for GI: 254780471 and conserved domain: TIGR02229

>TIGR02229 caa3_sub_IV caa(3)-type oxidase, subunit IV; InterPro: IPR011743 This entry represents a small set of proteins with weak similarity to the sequences in Pfam family IPR005171 from INTERPRO, which describes the cytochrome C oxidase subunit IV ..

Probab=91.43  E-value=0.92  Score=23.15  Aligned_cols=79  Identities=13%  Similarity=0.205  Sum_probs=43.4

Q ss_pred             CCC-HHHHHHHHHHHH---HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             885-256899999999---9999999999806-57884699999999999999999999970477876502599999999
Q gi|254780471|r   14 YGT-KKQCLVGFILSL---ILTIIPFGIVMKG-FFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTI   88 (119)
Q Consensus        14 hgs-~k~yliGFiLsi---iLT~iaF~lV~~~-~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~   88 (119)
T Consensus         3 Hi~~~~~~~~v~~~L~vL~~lTv~A~~~~~~LihiPG-~La~~val~IA~~KA~Lv~lyFMHl~~~~~l~rl~~a~af~~   81 (96)
T TIGR02229         3 HISDLATYLKVWLALLVLTALTVAASFFELELIHIPG-ALAVVVALAIAVVKAVLVVLYFMHLKRESKLLRLVVAVAFAI   81 (96)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHH
T ss_conf             8777347999999999999999999998433302587-689999999999999884453100110035899999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780471|r   89 IMVAI   93 (119)
Q Consensus        89 ~ii~i   93 (119)
T Consensus        82 Lailf   86 (96)
T TIGR02229        82 LAILF   86 (96)
T ss_pred             HHHHH
T ss_conf             99999