HHsearch alignment for GI: 254780471 and conserved domain: TIGR02901
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV; InterPro: IPR014250 This entry represents subunit IV of the aa3-type quinone oxidase (QoxD), one of several bacterial terminal oxidases . This complex couples oxidation of reduced quinones to the reduction of molecular oxygen to water, and the pumping of protons to form a proton gradient utilised for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0042773 ATP synthesis coupled electron transport, 0016021 integral to membrane.
Probab=99.91 E-value=1.5e-23 Score=149.07 Aligned_cols=92 Identities=25% Similarity=0.423 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHH
Q ss_conf 8885256899999999999999999980657884699999999999999999999970477876502599-999999999
Q gi|254780471|r 13 SYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIM-AMIFTIIMV 91 (119)
Q Consensus 13 ~hgs~k~yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~-a~~Ft~~ii 91 (119)
T Consensus 2 ~~~FP~kHv~GFilSL~LT~~AL~Va~~s~l~-~~~~~tIi~~~A~IQA~LQL~~FMH~~E~~~gk~q~~~n~~Y~~FiA 80 (95)
T TIGR02901 2 RELFPWKHVVGFILSLILTLLALWVALYSDLS-LKVGLTIIIVFAIIQASLQLIVFMHVNESEDGKVQIYLNIVYAFFIA 80 (95)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88871899999999999999999999996594-35656888889999999999988046757574057899999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999851
Q gi|254780471|r 92 AICFVGSMWVMYHL 105 (119)
Q Consensus 92 ~iiv~GSiWIM~~l 105 (119)
T Consensus 81 ~vtV~Gs~w~m~~g 94 (95)
T TIGR02901 81 LVTVFGSLWVMVWG 94 (95)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998863