HHsearch alignment for GI: 254780471 and conserved domain: TIGR02908

>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IV; InterPro: IPR014257 This entry represents a small clade of cytochrome oxidase subunit IV sequences found in the Bacillaceae..

Probab=99.82  E-value=5.9e-20  Score=129.21  Aligned_cols=80  Identities=30%  Similarity=0.388  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             85256899999999999999999980657884699999999999999999999970477876502599999999999999
Q gi|254780471|r   15 GTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAIC   94 (119)
Q Consensus        15 gs~k~yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~~ii~ii   94 (119)
T Consensus        23 eEMk~Q~~~F~LMI~lTliAF~aV~~~e~-~~wFviPfillLAavQvaFQlyYFMHM~~KGHE~Pa~f--iYgGvfV~~l   99 (110)
T TIGR02908        23 EEMKKQVVAFALMILLTLIAFLAVALDEV-DKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVPALF--IYGGVFVALL   99 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH--HHHHHHHHHH
T ss_conf             99899999999999999999999877324-54106989999999999999888872068997500799--9999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780471|r   95 FVG   97 (119)
Q Consensus        95 v~G   97 (119)
T Consensus       100 ~vl  102 (110)
T TIGR02908       100 VVL  102 (110)
T ss_pred             HHH
T ss_conf             998