RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780471|ref|YP_003064884.1| cytochrome o ubiquinol oxidase
subunit IV [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>3b9w_A Ammonium transporter family; membrane protein, ammonia
           transport, rhesus protein, transport protein; HET: BOG;
           1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A*
           3b9z_A* (A:39-167,A:295-407)
          Length = 242

 Score = 24.8 bits (54), Expect = 3.6
 Identities = 10/109 (9%), Positives = 27/109 (24%), Gaps = 17/109 (15%)

Query: 21  LVGFILSLILTIIPFGIVMKGF--FLDKNIMCLTIVL-----CAIAQIIVHLVFFLHMST 73
                  ++ T +P  I+++    F           +          +I        +  
Sbjct: 7   ATTGTYLVVATGLPLYILLRANGIFGHALTPHSVDAVIYAEFAVATGLIAMGAVLGRLRV 66

Query: 74  KVEDGWSIMAMIFTIIMVAICFVGSMWVMYHL---NNNMMSMEGMRSIH 119
                      +  + +V +  +    V+ +            G  +IH
Sbjct: 67  F-------QYALLALFIVPVYLLNEWLVLDNASGLTEGFQDSAGSIAIH 108


>3ddh_A Putative haloacid dehalogenase-like family hydrolase; HAD
          superfamily, structural genomics, PSI-2, protein
          structure initiative; 2.00A {Bacteroides
          thetaiotaomicron} (A:20-104)
          Length = 85

 Score = 24.6 bits (54), Expect = 4.5
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 5/26 (19%)

Query: 8  NMNMHSYGTKKQCLVGFILSLILTII 33
          N+ +  YG K      F +S + T +
Sbjct: 38 NLQILGYGAK-----AFTISXVETAL 58


>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus,
           glycoprotein, membrane, structural genomics, PSI-2,
           protein structure initiative; HET: BOG; 2.10A {Homo
           sapiens} (A:1-245,A:344-490)
          Length = 392

 Score = 24.2 bits (52), Expect = 6.5
 Identities = 6/67 (8%), Positives = 15/67 (22%), Gaps = 3/67 (4%)

Query: 49  MCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNN 108
             +    C  +  +        +S        IM      +     F+    +       
Sbjct: 129 NLINADFCVASVCVAFGAVLGKVSPI---QLLIMTFFQVTLFAVNEFILLNLLKVKDAGG 185

Query: 109 MMSMEGM 115
            M++   
Sbjct: 186 SMTIHTF 192


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.336    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 891,687
Number of extensions: 33349
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 35
Length of query: 119
Length of database: 4,956,049
Length adjustment: 71
Effective length of query: 48
Effective length of database: 2,555,894
Effective search space: 122682912
Effective search space used: 122682912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.3 bits)