RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780471|ref|YP_003064884.1| cytochrome o ubiquinol oxidase
subunit IV [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia
           coli [TaxId: 562]}
          Length = 140

 Score = 23.9 bits (51), Expect = 4.0
 Identities = 5/65 (7%), Positives = 14/65 (21%)

Query: 45  DKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYH 104
               + +   L     +  H +           G        ++ +       + W   H
Sbjct: 54  KAVTVDIYNQLTEETTLHWHGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPH 113

Query: 105 LNNNM 109
            +   
Sbjct: 114 QHGKT 118


>d1okia2 b.11.1.1 (A:145-236) beta-Crystallin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 92

 Score = 22.8 bits (49), Expect = 9.6
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 76  EDGWSIMAMIFTIIMVAICFVGSMWVMY 103
           +D  S+    F+  + ++      WV Y
Sbjct: 24  DDAPSLWVYGFSDRVGSVKVSSGTWVGY 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.336    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,989
Number of extensions: 17157
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 18
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 47 (22.1 bits)