HHsearch alignment for GI: 254780472 and conserved domain: TIGR02897
>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III; InterPro: IPR014246 This entry encodes subunit III of the aa3-type quinone oxidase (QoxC), one of several bacterial terminal oxidases . This complex couples oxidation of reduced quinones to the reduction of molecular oxygen to water, and the pumping of protons to form the proton gradient utilised for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms at the active site..
Probab=100.00 E-value=0 Score=265.85 Aligned_cols=184 Identities=38% Similarity=0.787 Sum_probs=173.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 256602688899999999999999999994278-8888866000024035789999999999999999999633336887
Q gi|254780472|r 26 DHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKN-YAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKT 104 (210)
Q Consensus 26 ~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~-~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~~ 104 (210)
T Consensus 6 ~g~LN~LGFWIFlgAE~~LFaTLFAtylvl~~~G~~~G~~~a~lFEL~lvLI~T~~LL~SSfTCGi~I~~MR~~~-~K~~ 84 (190)
T TIGR02897 6 QGRLNILGFWIFLGAEIALFATLFATYLVLRKAGDAAGKTPAELFELKLVLIMTFLLLASSFTCGIAIYEMRKEN-QKLM 84 (190)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 233120267899999999999999999998515666778617787689999999999973236668898750120-3568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 76558999999999889999875543111001478601679999899799999999999999999970799830426799
Q gi|254780472|r 105 VSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLI 184 (210)
Q Consensus 105 ~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~~ 184 (210)
T Consensus 85 ~~w~iiTLlLG~~FvgFEi~EF~~Y~~EGv~~~~gsy~S~FFvLLGTHG~HVt~GI~W~~~~lIQI~~~GL~~~~A~KvF 164 (190)
T TIGR02897 85 LIWSIITLLLGAGFVGFEIYEFAHYVSEGVTIQIGSYWSAFFVLLGTHGLHVTVGIVWAICVLIQIKKRGLTPVTASKVF 164 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 99999999987899999999999998448731277899999998611421568999999999999874078854555224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99899999999999999999998209
Q gi|254780472|r 185 CLSMFWHFLDLIWICVFSFVYLMGVV 210 (210)
Q Consensus 185 ~~~~YWHFVdivWi~lf~llYl~g~~ 210 (210)
T Consensus 165 I~SLYWHFLDvVWvFIfT~VYl~GMV 190 (190)
T TIGR02897 165 IVSLYWHFLDVVWVFIFTAVYLLGMV 190 (190)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 31147899999999999999975179