HHsearch alignment for GI: 254780472 and conserved domain: cd01665

>cd01665 Cyt_c_Oxidase_III Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool."
Probab=100.00  E-value=0  Score=322.01  Aligned_cols=190  Identities=28%  Similarity=0.508  Sum_probs=163.5

Q ss_pred             EEEECCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCCC-CHHHHHHH
Q ss_conf             465307765-------72025660268889999999999999999999427888-----8886-6000024-03578999
Q gi|254780472|r   14 LFYVKDKKE-------SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFDI-SGIFVSTI   79 (210)
Q Consensus        14 ~~~~~~~~~-------~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~~-~~~~~nT~   79 (210)
T Consensus        40 ~W~rdv~~E~~~~g~ht~~v~~~~~~Gm~lFI~SEvmfF~sfFwa~f~~~l~p~~~~g~~WPP~gi~~~~~~~lPllNT~  119 (243)
T cd01665          40 LWWRDVIRESTFGGHHTKKVQKGLRLGMILFILSEVMFFFSFFWAFFHSSLSPSVELGGTWPPVGIEPLNPFGIPLLNTI  119 (243)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             99999999852588770888844315359999999999999999999987132020486658999776533465156379


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r   80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG  159 (210)
Q Consensus        80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G  159 (210)
T Consensus       120 iLLsSs~tvt~Ah~al~~~-~~~~~~~~L~~Ti~LG~~Fl~~Q~~EY~~---~~ft~~d~vygS~Ff~~TGfHg~HVi~G  195 (243)
T cd01665         120 ILLSSGATVTWAHHALLLG-NRKKAILGLILTILLGVYFTGLQAYEYYE---ASFTISDSVYGSTFFMLTGFHGLHVIIG  195 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9997889999999999847-78889999999999999999999999996---6376688718999999981699999999


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999997079983042679999899999999999999999998
Q gi|254780472|r  160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLM  207 (210)
Q Consensus       160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~  207 (210)
T Consensus       196 ~i~L~v~~~r~~~~~~~~~~~~~~e~a~~YWHFVDvVWlflf~~vY~w  243 (243)
T cd01665         196 TIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHFVDVVWLFLFVFVYWW  243 (243)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999998089982210588999989989898999775286139