HHsearch alignment for GI: 254780472 and conserved domain: cd01665
>cd01665 Cyt_c_Oxidase_III Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool."
Probab=100.00 E-value=0 Score=322.01 Aligned_cols=190 Identities=28% Similarity=0.508 Sum_probs=163.5
Q ss_pred EEEECCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCCC-CHHHHHHH
Q ss_conf 465307765-------72025660268889999999999999999999427888-----8886-6000024-03578999
Q gi|254780472|r 14 LFYVKDKKE-------SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFDI-SGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~-------~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~~-~~~~~nT~ 79 (210)
T Consensus 40 ~W~rdv~~E~~~~g~ht~~v~~~~~~Gm~lFI~SEvmfF~sfFwa~f~~~l~p~~~~g~~WPP~gi~~~~~~~lPllNT~ 119 (243)
T cd01665 40 LWWRDVIRESTFGGHHTKKVQKGLRLGMILFILSEVMFFFSFFWAFFHSSLSPSVELGGTWPPVGIEPLNPFGIPLLNTI 119 (243)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999999852588770888844315359999999999999999999987132020486658999776533465156379
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG 159 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G 159 (210)
T Consensus 120 iLLsSs~tvt~Ah~al~~~-~~~~~~~~L~~Ti~LG~~Fl~~Q~~EY~~---~~ft~~d~vygS~Ff~~TGfHg~HVi~G 195 (243)
T cd01665 120 ILLSSGATVTWAHHALLLG-NRKKAILGLILTILLGVYFTGLQAYEYYE---ASFTISDSVYGSTFFMLTGFHGLHVIIG 195 (243)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9997889999999999847-78889999999999999999999999996---6376688718999999981699999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997079983042679999899999999999999999998
Q gi|254780472|r 160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLM 207 (210)
Q Consensus 160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~ 207 (210)
T Consensus 196 ~i~L~v~~~r~~~~~~~~~~~~~~e~a~~YWHFVDvVWlflf~~vY~w 243 (243)
T cd01665 196 TIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHFVDVVWLFLFVFVYWW 243 (243)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999998089982210588999989989898999775286139