HHsearch alignment for GI: 254780472 and conserved domain: cd02865
>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=100.00 E-value=0 Score=321.83 Aligned_cols=181 Identities=20% Similarity=0.347 Sum_probs=167.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20256602688899999999999999999994278888886600002403578999999999999999999963333688
Q gi|254780472|r 24 CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHK 103 (210)
Q Consensus 24 ~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~ 103 (210)
T Consensus 3 ~g~~spg~~G~w~fi~se~~~F~~l~~~y~~~~~~~~~~~~-~~~~~~~~~~~nT~~Ll~SS~~~~~A~~a~~~-~~~~~ 80 (184)
T cd02865 3 AGARSPGWWGLWVFMAVEGTLFALLISAYFMRMTSGDWQPG-APLPLPNLLSLNTAVLAASSVAMQWARRAARR-NRRVL 80 (184)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHH
T ss_conf 89899958999999999999999999999999974886777-65554018999999999999999999999994-98999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 77655899999999988999987554311100147860167999989979999999999999999997079983042679
Q gi|254780472|r 104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRL 183 (210)
Q Consensus 104 ~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~ 183 (210)
T Consensus 81 ~~~~L~~t~~LG~~Fl~~q~~E~~~l~~~g~~~~~~~~~s~fy~lTg~H~lHV~~Gli~l~~~~~~~~~~~~~~~~~~~~ 160 (184)
T cd02865 81 ARLGLALAGALALAFLAGQLLAWHALNDAGYGPTSNPAGSFFYLLTGLHGLHVIGGLVALAIVLAGLIRGHYGPRRRLPV 160 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999999999975887544038999999999999999999999999999998379983467889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999999999999
Q gi|254780472|r 184 ICLSMFWHFLDLIWICVFSFVYL 206 (210)
Q Consensus 184 ~~~~~YWHFVdivWi~lf~llYl 206 (210)
T Consensus 161 e~~~~YWHFvd~vWi~lf~~lYl 183 (184)
T cd02865 161 ELCALYWHFLLLVWLVLLALLYG 183 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999983