HHsearch results for GI: 254780472 and protein with PDBid: 1m56_C

>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=100.00  E-value=0  Score=316.36  Aligned_cols=187  Identities=22%  Similarity=0.447  Sum_probs=163.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---------CCC-CHHH-CCCCHHHHHHHHHHHHHHH
Q ss_conf             7765720256602688899999999999999999994278888---------886-6000-0240357899999999999
Q gi|254780472|r   19 DKKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAA---------GPA-PIDV-FDISGIFVSTIVLLLSSLS   87 (210)
Q Consensus        19 ~~~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~---------~~~-~~~~-~~~~~~~~nT~iLl~SS~~   87 (210)
                      +.+|+....++.|+|||+||+||+|+|+++|++|+..|...+.         +|| +... .+...+.+||.+|++||.+
T Consensus        68 ~G~~t~~v~~~~~~Gm~~Fi~SEvm~F~~~f~ay~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~l~l~nT~iLl~Ss~t  147 (266)
T 1m56_C           68 EGDHTPVVRLGLRWGFILFIMSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCA  147 (266)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTBTTTBCCCSSCTTCCCCCTTTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             58684888741689999999999999999999999997386788886547878996544367477789999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999633336887765589999999998899998755431110014786016799998997999999999999999
Q gi|254780472|r   88 CSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLV  167 (210)
Q Consensus        88 ~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~  167 (210)
                      +++|+++.+++++++.+..++..|+++|.+|+..|.+||.+   .+.+++||+|+|.||++||+|++||++|+++++++.
T Consensus       148 ~~~a~~~~~~~~~~~~~~~~l~~ti~lG~~Fl~~q~~Ey~~---~~~~~~~~~~gS~ff~lTG~Hg~HV~~G~i~l~~~~  224 (266)
T 1m56_C          148 ATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSH---AAFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCL  224 (266)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998852322558999999999999999999999998---765650658998999999999999999999999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99970799830426799998999999999999999999982
Q gi|254780472|r  168 IQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG  208 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g  208 (210)
                      .|..+++++++++.++|.+++||||||+||+++|+++|++|
T Consensus       225 ~~~~~~~~~~~~~~~~e~~~~YWHFVDvVWi~lf~~vYl~G  265 (266)
T 1m56_C          225 IRVQRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIWG  265 (266)
T ss_dssp             HHHHTCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99971799844017899999999888988998899898017