HHSEARCH alignment of GI: 254780472 and SCOP domain: d1m56c_

Alignment
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=100.00  E-value=0  Score=317.76  Aligned_cols=186  Identities=23%  Similarity=0.442  Sum_probs=162.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCC-CHHH-CCCCHHHHHHHHHHHHHHHH
Q ss_conf             76572025660268889999999999999999999427888---------8886-6000-02403578999999999999
Q gi|254780472|r   20 KKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA---------AGPA-PIDV-FDISGIFVSTIVLLLSSLSC   88 (210)
Q Consensus        20 ~~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~---------~~~~-~~~~-~~~~~~~~nT~iLl~SS~~~   88 (210)
                      ..|+....++.|+|||+||+||+|+|+++|++|+..|....         .+|| +... .++..+.+||.+|++||.++
T Consensus        68 G~~t~~v~~~~k~Gm~~Fi~SEvm~F~~~f~~yf~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~l~l~nT~iLl~Ss~~~  147 (265)
T d1m56c_          68 GDHTPVVRLGLRWGFILFIMSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCAA  147 (265)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTBTTTBCCCSSCTTCCCCCTTTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
T ss_conf             87755531014776499999999999999999999861878888877677779875231661454889989997108999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999996333368877655899999999988999987554311100147860167999989979999999999999999
Q gi|254780472|r   89 SFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVI  168 (210)
Q Consensus        89 ~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~  168 (210)
                      ++|+++.+++++++..+.++..|+++|..|+..|..||.+   .+.++++|+|+|+||++||+|++||++|+++|.++.+
T Consensus       148 ~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey~~---~~~~~~~~~~gs~ff~lTG~Hg~HV~~G~i~l~~~~~  224 (265)
T d1m56c_         148 TWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSH---AAFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLI  224 (265)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999865205789999999999999999999999985---4788643106779999999999999999999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9970799830426799998999999999999999999982
Q gi|254780472|r  169 QILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG  208 (210)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g  208 (210)
                      |..+++++++++.++|.+++||||||+||+++|+++|++|
T Consensus       225 ~~~~~~~~~~~~~~~e~~~~YWHFVDvVWi~lf~~~Yl~G  264 (265)
T d1m56c_         225 RVQRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIWG  264 (265)
T ss_dssp             HHHTCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9972799844018999999999899989998788884228


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit III-like
superfamily: Cytochrome c oxidase subunit III-like
family: Cytochrome c oxidase subunit III-like
domain: Bacterial aa3 type cytochrome c oxidase subunit III
species: Rhodobacter sphaeroides [TaxId: 1063]