RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase
subunit III [Candidatus Liberibacter asiaticus str. psy62]
(210 letters)
>gnl|CDD|131889 TIGR02842, CyoC, cytochrome o ubiquinol oxidase, subunit III.
Cytochrome o terminal oxidase complex is the component
of the aerobic respiratory chain which reacts with
oxygen, reducing it to water with the concomitant
transport of 4 protons across the membrane. Also known
as the cytochrome bo complex, cytochrome o ubiquinol
oxidase contains four subunits, two heme b cofactors and
a copper atom which is believed to be the oxygen active
site. This complex is structurally related to the
cytochrome caa3 oxidases which utilize cytochrome c as
the reductant and contain heme a cofactors, as well as
the intermediate form aa3 oxidases which also react
directly with quinones as the reductant.
Length = 180
Score = 234 bits (598), Expect = 2e-62
Identities = 103/181 (56%), Positives = 130/181 (71%), Gaps = 1/181 (0%)
Query: 30 TYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCS 89
T GFW+YLMSDC++FA F TYAVL N A GP+ ++FD+ + V T +LLLSS++
Sbjct: 1 TIFGFWLYLMSDCILFATLFATYAVLSNNTAGGPSGKEIFDLPFVLVETFLLLLSSITFG 60
Query: 90 FAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALV 149
FAMLA K + WL +T G+ FI MEIYEF HLI+ P RSAFLS+FF LV
Sbjct: 61 FAMLAMNKKNKK-MVILWLAITFLLGLGFIGMEIYEFYHLIAEGNGPDRSAFLSAFFTLV 119
Query: 150 GLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMGV 209
G HGLHV GLIW+ V++IQ+ K GL N+RRL CLS+FWHFLD++WICVF+FVYL+GV
Sbjct: 120 GTHGLHVTSGLIWIIVMIIQVYKYGLTKINRRRLACLSLFWHFLDIVWICVFTFVYLLGV 179
Query: 210 V 210
+
Sbjct: 180 L 180
>gnl|CDD|182628 PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III;
Provisional.
Length = 204
Score = 208 bits (530), Expect = 1e-54
Identities = 96/178 (53%), Positives = 126/178 (70%), Gaps = 1/178 (0%)
Query: 33 GFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAM 92
GFWIYLMSDC++F++ F TYAVL A GP D+F++ + V T +LL SS++ A
Sbjct: 28 GFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAA 87
Query: 93 LASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLH 152
+A K + +SWL +T FG FI MEIYEF HLI P RS FLS+FFALVG H
Sbjct: 88 IA-MYKNNKSQVISWLALTFLFGAGFIGMEIYEFHHLIVEGMGPDRSGFLSAFFALVGTH 146
Query: 153 GLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMGVV 210
GLHV GLIW+ VL++Q+ ++GL S N+ R++CLS+FWHFLD++WICVF+ VYLMG +
Sbjct: 147 GLHVTSGLIWMAVLMVQVARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM 204
>gnl|CDD|131943 TIGR02897, QoxC, cytochrome aa3 quinol oxidase, subunit III. This
family (QoxC) encodes subunit III of the aa3-type
quinone oxidase, one of several bacterial terminal
oxidases. This complex couples oxidation of reduced
quinones with the reduction of molecular oxygen to water
and the pumping of protons to form a proton gradient
utilized for ATP production. aa3-type oxidases contain
two heme a cofactors as well as copper atoms in the
active site.
Length = 190
Score = 137 bits (346), Expect = 2e-33
Identities = 70/180 (38%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 32 LGFWIYLMSDCLMFAVFFVTYAVL-GKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSF 90
LGFWI+L ++ +FA F TY VL AG P ++F++ + + T +LL SS +C
Sbjct: 12 LGFWIFLGAEIALFATLFATYLVLQHGGDYAGKMPAELFELPLVLIMTFLLLFSSFTCGI 71
Query: 91 AMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVG 150
A + K + W+++T G F+ EIYEFAH S PQ ++ SSFF L+G
Sbjct: 72 A-IYEMRKENQKLMMFWMIITLLLGAGFVGFEIYEFAHYASEGVTPQIGSYWSSFFVLLG 130
Query: 151 LHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMGVV 210
HG HV G++W L+IQI ++GL ++ +S++WHFLD++W+ +F+ VYL+G+V
Sbjct: 131 THGCHVTLGIVWAICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWVFIFTAVYLIGMV 190
>gnl|CDD|177845 PLN02194, PLN02194, cytochrome-c oxidase.
Length = 265
Score = 50.4 bits (120), Expect = 3e-07
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 17/190 (8%)
Query: 29 GTYLGFWIYLMSDCLMFAVFF--VTYAVLGKNYAAG----PAPIDVFDISGI-FVSTIVL 81
G G ++++S+ + F FF +++ L G P I+V D I F++T +L
Sbjct: 81 GPRYGSILFIVSEVMFFFAFFWASSHSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTPIL 140
Query: 82 LLSSLSCSFA---MLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQR 138
S + ++A +LA KR ++ V+ +L+ F F ME Y+ IS
Sbjct: 141 PSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTG-FQGMEYYQAPFTIS------D 193
Query: 139 SAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWI 198
S + S+FF G HG HV G ++L + I+ L + + +WHF+D++W+
Sbjct: 194 SIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWL 253
Query: 199 CVFSFVYLMG 208
+F +Y G
Sbjct: 254 FLFVSIYWWG 263
>gnl|CDD|180549 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 28.1 bits (63), Expect = 1.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 122 EIYEFAHLI-SMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVI 168
E+ ++A L+ ME + +A +S AL L G+ V VI
Sbjct: 270 EMVKYAELLRRMEGL---NALPASASALAALVKYLKKNGVNDNVVAVI 314
>gnl|CDD|180094 PRK05454, PRK05454, glucosyltransferase MdoH; Provisional.
Length = 696
Score = 28.0 bits (63), Expect = 2.0
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 73 GIFVSTIVLLLSS--LSCSFAMLASATKR-----LIHKTVSWLLVTAFFGMIFIIMEIYE 125
+F +T+VLL L +L +R + +S LL T F ++ I ++
Sbjct: 455 ALFAATMVLLFLPKLLGL-LLVLLDPKRRRAFGGALRLLLSVLLETLFSALLAPIRMLFH 513
Query: 126 FAHLISMEA-------VPQRSAFLSSFFALVGLHGLHVFFGLIWLFVL 166
++S+ +R + + HG H GL+
Sbjct: 514 TRFVVSILLGRDVGWNSQRRDDGSTPWGEAFRRHGWHTLLGLVLAAGA 561
>gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
decarboxylase protein; Provisional.
Length = 861
Score = 27.7 bits (62), Expect = 2.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 129 LISMEAVP--QRSAFLSSFFALVGLHGLHV 156
L+SME + Q+ FL+ F L HGL V
Sbjct: 324 LVSMETIGMWQQVGFLADVFTLFKKHGLSV 353
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit.
Sequences from Blastocladiella emersonii (GP|6636502,
GP|6636502 and PIR|T43025), C. elegans (GP|2315419,
GP|6671808 and PIR|T31763) and Drosophila melanogaster
(GP|7291424) score below trusted cutoff, apparently due
to long branch length (excessive divergence from the
last common ancestor) as evidenced by a phylogenetic
tree. Experimental evidence is needed to determine
whether these sequences represent ATPases with conserved
function. Aside from fragments, other sequences between
trusted and noise appear to be bacterial ATPases of
unclear lineage, but most likely calcium pumps.
Length = 997
Score = 27.8 bits (62), Expect = 2.2
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 119 IIMEIYEFAHLISMEAVPQRSAFLS-SFFALVGLHGLHVFFGLIWLFVLVIQILKKGLIS 177
I +EI F H+I+ AV FL SFF L + G +I+L +++ + +GL++
Sbjct: 258 IAIEIEHFIHIITGVAV-----FLGVSFFILSLILGYTWLEAVIFLIGIIVANVPEGLLA 312
Query: 178 GNQRRLICLSM 188
+CL++
Sbjct: 313 ---TVTVCLTL 320
>gnl|CDD|178648 PLN03100, PLN03100, Permease subunit of ER-derived-lipid
transporter; Provisional.
Length = 292
Score = 25.5 bits (56), Expect = 9.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 108 LLVTAFFGMIFIIMEIYEFAHL 129
LL ++F GM+F I + EF L
Sbjct: 93 LLTSSFVGMVFTIQFVREFTKL 114
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.335 0.146 0.465
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,431,024
Number of extensions: 214926
Number of successful extensions: 921
Number of sequences better than 10.0: 1
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 95
Length of query: 210
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,071,361
Effective search space: 492634681
Effective search space used: 492634681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (24.9 bits)