RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase
subunit III [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)



>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase,
           membrane protein, oxidoreductase; HET: HEM HEO; 3.50A
           {Escherichia coli} (C:)
          Length = 204

 Score =  108 bits (271), Expect = 5e-25
 Identities = 97/183 (53%), Positives = 126/183 (68%), Gaps = 1/183 (0%)

Query: 28  DGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLS 87
                GFWIYLMSDC++F++ F TYAVL    A GP   D+F++  + V T +LL SS++
Sbjct: 23  GTKIFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSIT 82

Query: 88  CSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFA 147
              A +A   K    + +SWL +T  FG  FI MEIYEF HLI     P RS FLS+FFA
Sbjct: 83  YGMAAIAM-YKNNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFA 141

Query: 148 LVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLM 207
           LVG HGLHV  GLIW+ VL++QI ++GL S N+ R++CLS+FWHFLD++WICVF+ VYLM
Sbjct: 142 LVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLM 201

Query: 208 GVV 210
           G +
Sbjct: 202 GAM 204


>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune
           system, complex (oxidoreductase/antibody), electron
           transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans}
           (C:78-273)
          Length = 196

 Score =  100 bits (251), Expect = 1e-22
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 14/191 (7%)

Query: 29  GTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAP-----------IDVFDISGIFVS 77
           G   GF +++MS+ + F  +F  +           +P           +         ++
Sbjct: 8   GLQYGFILFIMSEVMFFVAWFWAFIKNALYPMGPDSPIKDGVWPPEGIVTFDPWHLPLIN 67

Query: 78  TIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQ 137
           T++LLLS ++ ++A  A   +     T++ L+V    G+ F  ++ YE++H     A   
Sbjct: 68  TLILLLSGVAVTWAHHAFVLEGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTV 127

Query: 138 RSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIW 197
            +    +F+   G HG HV  G I+LFV +I++LK  +           + +WHF+D++W
Sbjct: 128 YA---GAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQMTQKQHVGFEAAAWYWHFVDVVW 184

Query: 198 ICVFSFVYLMG 208
           + +F  +Y+ G
Sbjct: 185 LFLFVVIYIWG 195


>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET:
           HEA PEH; 2.30A {Rhodobacter sphaeroides} (C:71-266)
          Length = 196

 Score = 99.8 bits (248), Expect = 2e-22
 Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 14/192 (7%)

Query: 28  DGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAP-----------IDVFDISGIFV 76
            G   GF +++MS+ + F+ +F ++           +P           I         +
Sbjct: 7   LGLRWGFILFIMSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLI 66

Query: 77  STIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVP 136
           +T++LL S  + ++A  A   +         L +    G +F + + YE++H     A  
Sbjct: 67  NTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFAGN 126

Query: 137 QRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLI 196
               + ++FF   G HG HV  G I+L V +I++ +                +WHF+D++
Sbjct: 127 I---YGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAIWYWHFVDVV 183

Query: 197 WICVFSFVYLMG 208
           W+ +F+ +Y+ G
Sbjct: 184 WLFLFASIYIWG 195


>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET:
           FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
           taurus} (C:70-261)
          Length = 192

 Score = 97.1 bits (241), Expect = 1e-21
 Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 11/188 (5%)

Query: 28  DGTYLGFWIYLMSDCLMFAVFFVTYAVL-------GKNYAAGPAPIDVFDISGIFVSTIV 80
            G   G  ++++S+ L F  FF  +                      +  +    ++T V
Sbjct: 8   KGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSV 67

Query: 81  LLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSA 140
           LL S +S ++A  +   +      +  L +T   G+ F +++  E+       +      
Sbjct: 68  LLASGVSITWAHHSL-MEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGV--- 123

Query: 141 FLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICV 200
           + S+FF   G HGLHV  G  +L V   + LK    S +       + +WHF+D++W+ +
Sbjct: 124 YGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFL 183

Query: 201 FSFVYLMG 208
           +  +Y  G
Sbjct: 184 YVSIYWWG 191


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.335    0.146    0.465 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,576,535
Number of extensions: 63156
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 26
Length of query: 210
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 125
Effective length of database: 2,082,624
Effective search space: 260328000
Effective search space used: 260328000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.3 bits)