RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase subunit III [Candidatus Liberibacter asiaticus str. psy62] (210 letters) >1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} (C:) Length = 204 Score = 108 bits (271), Expect = 5e-25 Identities = 97/183 (53%), Positives = 126/183 (68%), Gaps = 1/183 (0%) Query: 28 DGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLS 87 GFWIYLMSDC++F++ F TYAVL A GP D+F++ + V T +LL SS++ Sbjct: 23 GTKIFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSIT 82 Query: 88 CSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFA 147 A +A K + +SWL +T FG FI MEIYEF HLI P RS FLS+FFA Sbjct: 83 YGMAAIAM-YKNNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFA 141 Query: 148 LVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLM 207 LVG HGLHV GLIW+ VL++QI ++GL S N+ R++CLS+FWHFLD++WICVF+ VYLM Sbjct: 142 LVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLM 201 Query: 208 GVV 210 G + Sbjct: 202 GAM 204 >1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (C:78-273) Length = 196 Score = 100 bits (251), Expect = 1e-22 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 14/191 (7%) Query: 29 GTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAP-----------IDVFDISGIFVS 77 G GF +++MS+ + F +F + +P + ++ Sbjct: 8 GLQYGFILFIMSEVMFFVAWFWAFIKNALYPMGPDSPIKDGVWPPEGIVTFDPWHLPLIN 67 Query: 78 TIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQ 137 T++LLLS ++ ++A A + T++ L+V G+ F ++ YE++H A Sbjct: 68 TLILLLSGVAVTWAHHAFVLEGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTV 127 Query: 138 RSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIW 197 + +F+ G HG HV G I+LFV +I++LK + + +WHF+D++W Sbjct: 128 YA---GAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQMTQKQHVGFEAAAWYWHFVDVVW 184 Query: 198 ICVFSFVYLMG 208 + +F +Y+ G Sbjct: 185 LFLFVVIYIWG 195 >1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (C:71-266) Length = 196 Score = 99.8 bits (248), Expect = 2e-22 Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 14/192 (7%) Query: 28 DGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAP-----------IDVFDISGIFV 76 G GF +++MS+ + F+ +F ++ +P I + Sbjct: 7 LGLRWGFILFIMSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLI 66 Query: 77 STIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVP 136 +T++LL S + ++A A + L + G +F + + YE++H A Sbjct: 67 NTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFAGN 126 Query: 137 QRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLI 196 + ++FF G HG HV G I+L V +I++ + +WHF+D++ Sbjct: 127 I---YGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGFEAAIWYWHFVDVV 183 Query: 197 WICVFSFVYLMG 208 W+ +F+ +Y+ G Sbjct: 184 WLFLFASIYIWG 195 >1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (C:70-261) Length = 192 Score = 97.1 bits (241), Expect = 1e-21 Identities = 41/188 (21%), Positives = 78/188 (41%), Gaps = 11/188 (5%) Query: 28 DGTYLGFWIYLMSDCLMFAVFFVTYAVL-------GKNYAAGPAPIDVFDISGIFVSTIV 80 G G ++++S+ L F FF + + + ++T V Sbjct: 8 KGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSV 67 Query: 81 LLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSA 140 LL S +S ++A + + + L +T G+ F +++ E+ + Sbjct: 68 LLASGVSITWAHHSL-MEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGV--- 123 Query: 141 FLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICV 200 + S+FF G HGLHV G +L V + LK S + + +WHF+D++W+ + Sbjct: 124 YGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFL 183 Query: 201 FSFVYLMG 208 + +Y G Sbjct: 184 YVSIYWWG 191 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.335 0.146 0.465 Gapped Lambda K H 0.267 0.0515 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,576,535 Number of extensions: 63156 Number of successful extensions: 218 Number of sequences better than 10.0: 1 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 26 Length of query: 210 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 125 Effective length of database: 2,082,624 Effective search space: 260328000 Effective search space used: 260328000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 52 (24.3 bits)