BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase subunit III [Candidatus Liberibacter asiaticus str. psy62] (210 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase subunit III [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 421 bits (1083), Expect = e-120, Method: Compositional matrix adjust. Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MSRQKIGKSPNFSLFYVKDKKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA 60 MSRQKIGKSPNFSLFYVKDKKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA Sbjct: 1 MSRQKIGKSPNFSLFYVKDKKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA 60 Query: 61 AGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFII 120 AGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFII Sbjct: 61 AGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFII 120 Query: 121 MEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQ 180 MEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQ Sbjct: 121 MEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQ 180 Query: 181 RRLICLSMFWHFLDLIWICVFSFVYLMGVV 210 RRLICLSMFWHFLDLIWICVFSFVYLMGVV Sbjct: 181 RRLICLSMFWHFLDLIWICVFSFVYLMGVV 210 >gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 23.9 bits (50), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 113 FFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGL---HGLHVFFGLIWLFVLVIQ 169 F GMI E+ + A + E++P R AF FF VG+ + + ++ + ++I Sbjct: 264 FAGMILAESELSQSA---AQESLPLRDAFSVLFFISVGMMFNPDILISNPILLMMAVIIV 320 Query: 170 ILKKGLIS 177 I+ K LI+ Sbjct: 321 IIGKALIA 328 >gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport system [Candidatus Liberibacter asiaticus str. psy62] Length = 309 Score = 23.5 bits (49), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 79 IVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIM-EIYEFAHLISMEAVP 136 + L L++ S S+A A + + W + A M +I+ EI + I + AVP Sbjct: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.335 0.146 0.465 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 133,633 Number of Sequences: 1233 Number of extensions: 5165 Number of successful extensions: 25 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 12 length of query: 210 length of database: 328,796 effective HSP length: 70 effective length of query: 140 effective length of database: 242,486 effective search space: 33948040 effective search space used: 33948040 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 36 (18.5 bits)