HHsearch alignment for GI: 254780473 and conserved domain: MTH00048
>MTH00048 COX1 cytochrome c oxidase subunit I; Provisional.
Probab=94.79 E-value=0.27 Score=26.46 Aligned_cols=249 Identities=13% Similarity=0.233 Sum_probs=102.3
Q ss_pred HHHHHH-HHHHHHHHHCCCCCCHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC--CHHHHH
Q ss_conf 987556-89999997236898831331566-68999999999973335788899877763298011465432--101322
Q gi|254780473|r 211 TTLSGI-NLVVTIIKMRCPGMTMMKMPVFV-WTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGG--NPMMYI 286 (671)
Q Consensus 211 sll~~i-Nfi~TI~~~RapGm~l~rmPlf~-W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GG--dplL~q 286 (671)
T Consensus 74 ~l~ggfgNyliPlm-iGa~DmaFPRLNa~SfWl~~~~~~~~~~s~~~--g--------~~~GWT~YpPLS~~~~~~g~g~ 142 (514)
T MTH00048 74 VLIGGFGNYLLPLL-LGLSDLNLPRLNALSAWLLVPSIVFLLLSMCL--G--------AGVGWTFYPPLSSSYFSSSVGV 142 (514)
T ss_pred HHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC--C--------CCCCCEEECCCCCCCCCCCCCH
T ss_conf 99999899999996-59975300547887899899999999998621--7--------8888516168120257898317
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHHHHHH-------------HHHHCCC
Q ss_conf 1233340125799-99879999999985-----310564026689999999999997533-------------2210224
Q gi|254780473|r 287 NLIWIWGHPEVYI-LVLPAFGIFSEVVA-----TFSGKRLFGYNSMVYATLAITILSYTV-------------WLHHFFT 347 (671)
Q Consensus 287 ~LFW~fGHPeVYI-liLPa~Gi~seiip-----~fs~kplfgy~~~v~A~~~i~~lsf~V-------------W~HHmFt 347 (671)
T Consensus 143 -d~~i~~l~l~giSSilgsiNfi~Ti~~r~~~~~~~rmPlf~Ws~l~Ts--~Lll~a~PvL~~a~~mll~DR~~gt~FF~ 219 (514)
T MTH00048 143 -DFLMFSLHLAGVSSLFGSINFICTLYSAFMTNVFSRTSIILWAYLFTS--ILLLLSLPVLAAAITMLLFDRNFGSAFFD 219 (514)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf -999999999999899989999999998079985011539999999999--99998425999999998814455776778
Q ss_pred C---CCCHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHCCCCCEE-CHHHHHHHHHHHHHHHHHHHHHHCCC----CC
Q ss_conf 7---8758899876---5-3346788987799998787425873022-43799999999999988755653034----32
Q gi|254780473|r 348 M---GSGANVNAFF---G-IMTMVIAVPTGAKIFNWLFTMRLGKVRF-EVPMMWTLGFMITFLIGGMTGVLLAV----PP 415 (671)
Q Consensus 348 ~---G~~~~~~~~F---~-i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~-~~pml~~lgfi~~F~iGG~tGv~lA~----~~ 415 (671)
T Consensus 220 p~~GGdp~L~QHLFWffGHPEVYIliLPafGiiSeii~~~s~k~~iFGy~~mv~a~~~I~-----~lgf~VW~HHMFt~G 294 (514)
T MTH00048 220 PLGGGDPVLFQHMFWFFGHPEVYVLILPGFGIISHICLSLSNNDDSFGYYGLLFAMFSIV-----CLGSVVWAHHMFTVG 294 (514)
T ss_pred CCCCCCCCHHCCCHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-----HHHEEEEECCEEECC
T ss_conf 677987235404510058973632004227999999987407865133668999999998-----760146742446238
Q ss_pred CCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 1112127422044789999999999999999996244307674716899999999999999999999987640530
Q gi|254780473|r 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTR 491 (671)
Q Consensus 416 ~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpR 491 (671)
T Consensus 295 ~~-~~~~~~Fs~-----~T~lIavPTgi-kiFnWi~Tl~~g~i~~~---~p~l~f~~gfi~~F~---iGGlTGv~l 357 (514)
T MTH00048 295 LD-VKTAVFFSS-----VTMIIGVPTGI-KVFSWLYMLLNSRVRKS---DPVVWWVVSFIVLFT---IGGVTGIVL 357 (514)
T ss_pred CC-CHHHHHHHH-----HHHHHHHHHHH-HHHHHHHHHHCCCEEEC---CHHHHHHHHHHHHHH---HHHHHHHHC
T ss_conf 87-138899886-----45787600258-99999999847870436---289999999999998---352110213