HHsearch alignment for GI: 254780473 and conserved domain: MTH00048

>MTH00048 COX1 cytochrome c oxidase subunit I; Provisional.
Probab=94.79  E-value=0.27  Score=26.46  Aligned_cols=249  Identities=13%  Similarity=0.233  Sum_probs=102.3

Q ss_pred             HHHHHH-HHHHHHHHHCCCCCCHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC--CHHHHH
Q ss_conf             987556-89999997236898831331566-68999999999973335788899877763298011465432--101322
Q gi|254780473|r  211 TTLSGI-NLVVTIIKMRCPGMTMMKMPVFV-WTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGG--NPMMYI  286 (671)
Q Consensus       211 sll~~i-Nfi~TI~~~RapGm~l~rmPlf~-W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GG--dplL~q  286 (671)
T Consensus        74 ~l~ggfgNyliPlm-iGa~DmaFPRLNa~SfWl~~~~~~~~~~s~~~--g--------~~~GWT~YpPLS~~~~~~g~g~  142 (514)
T MTH00048         74 VLIGGFGNYLLPLL-LGLSDLNLPRLNALSAWLLVPSIVFLLLSMCL--G--------AGVGWTFYPPLSSSYFSSSVGV  142 (514)
T ss_pred             HHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC--C--------CCCCCEEECCCCCCCCCCCCCH
T ss_conf             99999899999996-59975300547887899899999999998621--7--------8888516168120257898317


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHHHHHH-------------HHHHCCC
Q ss_conf             1233340125799-99879999999985-----310564026689999999999997533-------------2210224
Q gi|254780473|r  287 NLIWIWGHPEVYI-LVLPAFGIFSEVVA-----TFSGKRLFGYNSMVYATLAITILSYTV-------------WLHHFFT  347 (671)
Q Consensus       287 ~LFW~fGHPeVYI-liLPa~Gi~seiip-----~fs~kplfgy~~~v~A~~~i~~lsf~V-------------W~HHmFt  347 (671)
T Consensus       143 -d~~i~~l~l~giSSilgsiNfi~Ti~~r~~~~~~~rmPlf~Ws~l~Ts--~Lll~a~PvL~~a~~mll~DR~~gt~FF~  219 (514)
T MTH00048        143 -DFLMFSLHLAGVSSLFGSINFICTLYSAFMTNVFSRTSIILWAYLFTS--ILLLLSLPVLAAAITMLLFDRNFGSAFFD  219 (514)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             -999999999999899989999999998079985011539999999999--99998425999999998814455776778


Q ss_pred             C---CCCHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHCCCCCEE-CHHHHHHHHHHHHHHHHHHHHHHCCC----CC
Q ss_conf             7---8758899876---5-3346788987799998787425873022-43799999999999988755653034----32
Q gi|254780473|r  348 M---GSGANVNAFF---G-IMTMVIAVPTGAKIFNWLFTMRLGKVRF-EVPMMWTLGFMITFLIGGMTGVLLAV----PP  415 (671)
Q Consensus       348 ~---G~~~~~~~~F---~-i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~-~~pml~~lgfi~~F~iGG~tGv~lA~----~~  415 (671)
T Consensus       220 p~~GGdp~L~QHLFWffGHPEVYIliLPafGiiSeii~~~s~k~~iFGy~~mv~a~~~I~-----~lgf~VW~HHMFt~G  294 (514)
T MTH00048        220 PLGGGDPVLFQHMFWFFGHPEVYVLILPGFGIISHICLSLSNNDDSFGYYGLLFAMFSIV-----CLGSVVWAHHMFTVG  294 (514)
T ss_pred             CCCCCCCCHHCCCHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-----HHHEEEEECCEEECC
T ss_conf             677987235404510058973632004227999999987407865133668999999998-----760146742446238


Q ss_pred             CCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             1112127422044789999999999999999996244307674716899999999999999999999987640530
Q gi|254780473|r  416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTR  491 (671)
Q Consensus       416 ~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpR  491 (671)
T Consensus       295 ~~-~~~~~~Fs~-----~T~lIavPTgi-kiFnWi~Tl~~g~i~~~---~p~l~f~~gfi~~F~---iGGlTGv~l  357 (514)
T MTH00048        295 LD-VKTAVFFSS-----VTMIIGVPTGI-KVFSWLYMLLNSRVRKS---DPVVWWVVSFIVLFT---IGGVTGIVL  357 (514)
T ss_pred             CC-CHHHHHHHH-----HHHHHHHHHHH-HHHHHHHHHHCCCEEEC---CHHHHHHHHHHHHHH---HHHHHHHHC
T ss_conf             87-138899886-----45787600258-99999999847870436---289999999999998---352110213