HHsearch alignment for GI: 254780473 and conserved domain: TIGR02891
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I; InterPro: IPR014241 This entry represents the bacterial-type cytochrome c oxidase subunit I (CtaD, CoxA, CaaA). Cytochrome c oxidase is the component of the respiratory chain that catalyses the reduction of oxygen to water. Subunits I, II and III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A centre of subunit II and heme a of subunit I to the bimetallic centre formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer activity. In the bacilli an apparent split (paralogism) has created a sister clade (IPR014233 from INTERPRO) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c..
Probab=100.00 E-value=0 Score=1616.87 Aligned_cols=505 Identities=49% Similarity=0.970 Sum_probs=499.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 30000147999999999999999999999999998507675667-76687898999999999999999999-99999999
Q gi|254780473|r 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGE-GYLDAHHYDQIFTAHGVIMIFFVAMP-MITGIMNF 135 (671)
Q Consensus 58 wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~-~~l~~~~Ynq~~T~HG~~Mif~~a~p-~~~G~~n~ 135 (671)
T Consensus 1 wl~tvDHK~IG~lY~~~~~~fFl~GG~lAll~R~qLa~P~---~F~~~~~~~YNq~fT~HG~~M~Flf~~Pa~~~gFgNy 77 (524)
T TIGR02891 1 WLTTVDHKRIGILYLVTAFAFFLVGGVLALLMRAQLATPG---NFTFMDAETYNQLFTMHGTIMIFLFAVPAILAGFGNY 77 (524)
T ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9325210799999999999999999999999999863898---6012388789999999999999999999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99986498640058899999999999999999999717-----6778-88313478655877885204588779999999
Q gi|254780473|r 136 VVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIG-----EFAS-VGWLAYPPLSGISYSPGVGVDYYIWGLQIAGI 209 (671)
Q Consensus 136 lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g-----~~~~-~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gi 209 (671)
T Consensus 78 l~PLMiGArDmAFPRLNa~syW~yl~G~~l~~~s~~~~l~~~G~aP~~~GWt~Y~PLs~~~~~~G~~~d~~llg~~~~G~ 157 (524)
T TIGR02891 78 LLPLMIGARDMAFPRLNAFSYWLYLFGGLLLLASFFTGLFGIGGAPDGTGWTMYPPLSLLSYSPGVGVDLWLLGLHLLGI 157 (524)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 86886388876402267899999999999999998733120365756675323464123666888439999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC--CCCHHHHHH
Q ss_conf 998755689999997236898831331566689999999999733357888998777632980114654--321013221
Q gi|254780473|r 210 GTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHL--GGNPMMYIN 287 (671)
Q Consensus 210 gsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~--GGdplL~q~ 287 (671)
T Consensus 158 Ssi~ga~NfivTil~~RAPGMtl~~mPlFvW~~L~ts~~~l~A~P~L~~a~~ll~ldR~~G~~FF~pa~VmGGDP~LwQH 237 (524)
T TIGR02891 158 SSILGAVNFIVTILKMRAPGMTLMRMPLFVWGILVTSILILLAFPVLAAALILLLLDRLFGTHFFDPARVMGGDPLLWQH 237 (524)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHH
T ss_conf 99998888998655058857973331188999999999999997799999999999985387642154650686357877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 23334012579999879999999985310564026689999999999997533221022478758899876533467889
Q gi|254780473|r 288 LIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAV 367 (671)
Q Consensus 288 LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaI 367 (671)
T Consensus 238 LFWFFGHPEVYI~~LPa~Gi~S~i~ptFaRkp~FGY~~~V~a~~aIg~lsf~VWaHHMFt~G~~~~~~~~Fs~~t~~iAv 317 (524)
T TIGR02891 238 LFWFFGHPEVYIIVLPAFGIISEIIPTFARKPIFGYRAMVYATVAIGFLSFGVWAHHMFTTGIPPLALAFFSAATMLIAV 317 (524)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHHHHHHHHHHHHHHH
T ss_conf 64440270678998369999999968753898632899999999999998664223301126442589999999999998
Q ss_pred HHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87799998787425873022437999999999999887556530343211121274220447899999999999999999
Q gi|254780473|r 368 PTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIV 447 (671)
Q Consensus 368 PTgvkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiy 447 (671)
T Consensus 318 PTgvKvFnWiaTlw~G~i~f~~PMLf~lGFi~~F~iGGLTGvmlA~~p~D~~~HDTYFVVAHFHYVl~Gg~vF~~~aa~Y 397 (524)
T TIGR02891 318 PTGVKVFNWIATLWGGSIRFKTPMLFALGFIFLFVIGGLTGVMLASVPLDWQLHDTYFVVAHFHYVLVGGSVFALFAAIY 397 (524)
T ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54799999999987685123157899999999999878899999877605333575000357999999999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC----CC-CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9624430767471689999999999999999999998764053030025----87-005799999999999999999999
Q gi|254780473|r 448 YWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQY----ED-TTLQVYYVVALLGAVLIGIGVFSF 522 (671)
Q Consensus 448 yW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y----~~-~~~~~~n~istiGa~l~~~g~l~f 522 (671)
T Consensus 398 YWfPk~TGRm~~erlG~~hFwl~f~GfN~tFfPmh~lGl~GMPRR~~tYe~f~~~~~Gf~~lN~~St~Gaf~la~g~L~f 477 (524)
T TIGR02891 398 YWFPKVTGRMYNERLGRWHFWLTFVGFNLTFFPMHLLGLLGMPRRYYTYEYFIPPQMGFATLNLISTIGAFILAAGVLLF 477 (524)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87222025767344788999999999999999999985278986343054006755772177799999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCC-C-CCCCCC-CCCCCCCCCCCCCC-CEE
Q ss_conf 9999999744953568999899-9-971012-69981199894759-607
Q gi|254780473|r 523 VLSFIVSFLNRSKLQDTIGDPW-D-GRTLEW-SISSPSPQYNFAFT-PIV 568 (671)
Q Consensus 523 ~~nl~~S~~~~~~~~~~~~dPW-~-~~tLEW-~~~sPpp~~nF~~~-P~v 568 (671)
T Consensus 478 ~~~~~~~~~~G~~a~~---NPW~g~A~TLEW~~~~sPPp~~nf~~~~P~v 524 (524)
T TIGR02891 478 LVNVIWSLRKGPKAGA---NPWEGAATTLEWQATSSPPPAHNFESLLPVV 524 (524)
T ss_pred HHHHHHHHHCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999615887898---8644467863334668878988875567749