HHsearch results for GI: 254780473 and protein with PDBid: 1xme_A

>1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.24.1.1 PDB: 2qpe_A* 2qpd_A* 3bvd_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A*
Probab=100.00  E-value=0  Score=945.46  Aligned_cols=489  Identities=23%  Similarity=0.350  Sum_probs=452.0

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             303000014799999999999999999999999999850767566---77668789899999999999999999999999
Q gi|254780473|r   56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGG---EGYLDAHHYDQIFTAHGVIMIFFVAMPMITGI  132 (671)
Q Consensus        56 ~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~---~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~  132 (671)
                      ++|++|+||||||++|+++|++++++|+++|+++|.|++.|+...   ....++|+|||++|+||++|+|++++|++.|+
T Consensus        15 ~r~~~~~~~k~i~~~yl~~a~~~lliG~~~gll~rl~l~~~~~~~~~~~~~~~~~~Y~q~~T~HG~~mif~f~~~~~~g~   94 (568)
T 1xme_A           15 SRVYEAYPEKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAI   94 (568)
T ss_dssp             CHHHHHCTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCCCHHHHHHHSTTCCCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             16885587679999999999999999999999999996198644441113677114657359999999999999999999


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999986498640058899999999999999999999717677888313478655877885204588779999999998
Q gi|254780473|r  133 MNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTT  212 (671)
Q Consensus       133 ~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsl  212 (671)
                      +||++|+|+|+||+  +|+|++|||++..|.++...|++.|+ +++|||+|||||+        .+.+.+|+.+..+|++
T Consensus        95 ~~y~vp~~lg~r~~--~~l~~~sfwl~~~g~vl~~~s~~~G~-~~~gwt~Y~PLs~--------~~~~~ig~~l~vv~~~  163 (568)
T 1xme_A           95 MVYLPARELNMRPN--MGLMWLSWWMAFIGLVVAALPLLANE-ATVLYTFYPPLKG--------HWAFYLGASVFVLSTW  163 (568)
T ss_dssp             HHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHTTS-CCSTTTTCTTBCC--------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCEECCCCCC--------CCCHHHHHHHHHHHHH
T ss_conf             99999998299964--25899999999999999999980688-7765444576445--------5320220799999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf             75568999999723689883133156668999999999973335788899877763298011465432101322123334
Q gi|254780473|r  213 LSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIW  292 (671)
Q Consensus       213 l~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~f  292 (671)
                      + ++|++.|+.++|++|++..|+|+|+|+.++++++++++.|+++++..++++||.+|     +..||||+|||||||+|
T Consensus       164 ~-~~~~~~t~~~~r~~~~~~~~~Pl~~w~~~~t~~l~~~a~~~l~~~~~~~ll~~~~~-----~~~ggdplL~q~LFWff  237 (568)
T 1xme_A          164 V-SIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFG-----LVEGVDPLVARTLFWWT  237 (568)
T ss_dssp             H-HHHHHHHHHHHHHHSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-----SCSEECHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHC
T ss_conf             9-99999999998248998553359999999999999975078889999999864156-----56785587888889871


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01257999987999999998531056402668999999999999753322102247-87588998765334678898779
Q gi|254780473|r  293 GHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTM-GSGANVNAFFGIMTMVIAVPTGA  371 (671)
Q Consensus       293 GHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~-G~~~~~~~~F~i~Tm~IaIPTgv  371 (671)
                      ||||||++++|++|++||++|+++|||+|||+.+++++++++++|+.||.||||++ |++++.+.+|++.|++|++||++
T Consensus       238 GHp~Vyi~ilPa~g~~y~iip~~sgkplfs~~~~~~af~~~~~l~~~v~~HHmf~~~g~~~~~~~~~~~~T~~i~iPs~~  317 (568)
T 1xme_A          238 GHPIVYFWLLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLM  317 (568)
T ss_dssp             HTHHHHHHHHHHHHHHHHTHHHHHTSCBSCHHHHHHHHHHHHHHSSTTGGGGCTTCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHEEHHHCCCCEEECCHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             76499999999999999930110389621020577778878762102313011267787768999999999999999999


Q ss_pred             -------------------HHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHH
Q ss_conf             -------------------9998787425873022437999999999999887556530343211121274220447899
Q gi|254780473|r  372 -------------------KIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHN  432 (671)
Q Consensus       372 -------------------kiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHy  432 (671)
                                         |+|||++|+++|+++++.++++.++    |++||+||+++|+.++|.++||||||||||||
T Consensus       318 ~~f~~~~tl~~~~~~~~g~~if~W~~tl~~~~~~~~~~~l~~~~----f~~gG~tGv~~a~~~in~~~H~T~~VvaHfH~  393 (568)
T 1xme_A          318 TAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLG----FIPGGAGGIVNASFTLDYVVHNTAWVPGHFHL  393 (568)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSTTHHHHHSCTTCHHHHHHHHHHHH----HHHHHHHHHHHTSGGGHHHHTTBTHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHH----HHHHCCCHHHHCCCCCCHHHHCCCEEEEEEEE
T ss_conf             99999999875022367852453777763898578999999999----99625205654455125988088567665202


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC--CCC--CHHHHHH
Q ss_conf             9999999999999999624430767471---68999999999999999999999876405303002--587--0057999
Q gi|254780473|r  433 TIIGGVVFGLFAGIVYWFPKAFGYQLNS---FWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQ--YED--TTLQVYY  505 (671)
Q Consensus       433 vl~gg~vf~~fagiyyW~Pk~~Gr~l~e---~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~--y~~--~~~~~~n  505 (671)
                      ++.+++++++||++|||+||++||+++|   |++++|||++++|++++|+|||++|++|||||.+.  |++  ++++++|
T Consensus       394 ~l~g~~~~~~~g~~y~~~P~ltGr~l~~~~~kL~~~~fwl~~iG~~~~f~~m~~~Gl~G~pRR~~~~~~~~~~~~~~~~~  473 (568)
T 1xme_A          394 QVASLVTLTAMGSLYWLLPNLTGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPM  473 (568)
T ss_dssp             HTTTHHHHHHHHTHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSSCCGGGSGGGCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             18999999999999999999968820178999999999999999999999999986067865465677337788889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             999999999999999999999999744953568999899997101269981199894759607
Q gi|254780473|r  506 VVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIV  568 (671)
Q Consensus       506 ~istiGa~l~~~g~l~f~~nl~~S~~~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v  568 (671)
                      +++++|++++.+|+++|++|++.|+++|||+++   |||+..++||+++||||++||..+|..
T Consensus       474 ~~~~ig~~i~~~g~llf~~nl~~s~~~~~~~~~---~~~~p~~~~~~~~~p~~~~~~~~l~~~  533 (568)
T 1xme_A          474 VFNVLAGIVLLVALLLFIYGLFSVLLSRERKPE---LAEAPLPFAEVISGPEDRRLVLAMDRI  533 (568)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHH---HHSSCCCCCCBCCCSSHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999999999999999999999984676999---999998600036799999987458871