HHsearch results for GI: 254780473 and protein with PDBid: 2gsm_A

>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Probab=96.20  E-value=0.054  Score=29.76  Aligned_cols=179  Identities=16%  Similarity=0.202  Sum_probs=73.8

Q ss_pred             HHHHH-HHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHH
Q ss_conf             87556-89999997236898831331566689999999999733357888998777632980114654321013221233
Q gi|254780473|r  212 TLSGI-NLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIW  290 (671)
Q Consensus       212 ll~~i-Nfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW  290 (671)
                      +.++. |+++-.. ..+|.|.+-|+..+.+-.+..+.+++..-.....+..  ......|..++.|-..-++-. ..=+|
T Consensus       115 l~ggfgN~lvPlm-iGa~DmAFPRlN~~sfwl~~~~~~l~~~s~~~~~~~~--~~g~~~GWt~y~Pls~~~~~~-~vd~~  190 (566)
T 2gsm_A          115 LFGGFGNYFMPLH-IGAPDMAFPRMNNLSYWLYVAGTSLAVASLFAPGGNG--QLGSGIGWVLYPPLSTSESGY-STDLA  190 (566)
T ss_dssp             HTTTHHHHHHHHH-HTCSSCSCHHHHHHHHHHHHHHHHHHHHHTTSBCGGG--SBSCCSTTTTCTTHHHHCCSS-HHHHH
T ss_pred             HHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCC-HHHHH
T ss_conf             9999999999986-6997552165888889998899999999986168876--667776864467733468983-79999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHH------HCCCCCHHHHHHHHHHHHHHHHHHHH--------HH-H----HCCC--C
Q ss_conf             340125799-998799999999853------10564026689999999999997533--------22-1----0224--7
Q gi|254780473|r  291 IWGHPEVYI-LVLPAFGIFSEVVAT------FSGKRLFGYNSMVYATLAITILSYTV--------WL-H----HFFT--M  348 (671)
Q Consensus       291 ~fGHPeVYI-liLPa~Gi~seiip~------fs~kplfgy~~~v~A~~~i~~lsf~V--------W~-H----HmFt--~  348 (671)
                      .+|--.+-+ -++-+.-.+..++..      ..|-|+|....++.+..  .++++.|        .. +    |+|.  .
T Consensus       191 i~~l~l~gissilgsiNfi~Ti~~~R~~gm~~~~~Plf~w~~l~t~~l--~lla~Pvl~~~~~~ll~Dr~~gt~fF~~~~  268 (566)
T 2gsm_A          191 IFAVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWL--ILLALPVLAGAITMLLTDRNFGTTFFQPSG  268 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCTTTSCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHSCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCEECCCC
T ss_conf             999999999999999999999998158999855381999999999999--999999999999999998607974047777


Q ss_pred             CCCH-HHHHH---HH-HHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHH
Q ss_conf             8758-89987---65-3346788987799998787425873022437999999
Q gi|254780473|r  349 GSGA-NVNAF---FG-IMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLG  396 (671)
Q Consensus       349 G~~~-~~~~~---F~-i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~~pml~~lg  396 (671)
                      |-++ ..+..   |+ -...++.+|.-.-+..-+-+.-|+++.=...|.+++.
T Consensus       269 GGdp~L~qhLFWffgHPeVYi~iLPa~Gi~s~iip~~a~k~lfg~~~~~~a~~  321 (566)
T 2gsm_A          269 GGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMV  321 (566)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             85699999999974898342014117899999999721777767389999999