HHSEARCH alignment of GI: 254780473 and SCOP domain: d1v54a_

Alignment
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=95.63  E-value=0.054  Score=28.13  Aligned_cols=174  Identities=18%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             HHH-HHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC--CHHHHHHHH
Q ss_conf             556-89999997236898831331566689999999-99973335788899877763298011465432--101322123
Q gi|254780473|r  214 SGI-NLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIM-IIAAFPILTATLFLLTLDRYIGTNFFTNHLGG--NPMMYINLI  289 (671)
Q Consensus       214 ~~i-Nfi~TI~~~RapGm~l~rmPlf~W~~l~tsil-~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GG--dplL~q~LF  289 (671)
                      ++. |+++-. ...+|.|..-|+....+-.+..+.+ +..++-.-.+        ..-|..+|.|-.+.  ++-.. --+
T Consensus        76 ggFgn~lvPl-~iGa~dmafPRlN~~sfWl~~~~~~ll~~s~~~~~g--------~~~GWT~YpPLs~~~~~~~~~-vdl  145 (514)
T d1v54a_          76 GGFGNWLVPL-MIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAG--------AGTGWTVYPPLAGNLAHAGAS-VDL  145 (514)
T ss_dssp             THHHHHHHHH-HTTCSSCSSHHHHHHHHHTHHHHHHHHHHHHHSTTC--------CCSTTTTCTTTTSTTTTCSSH-HHH
T ss_pred             HHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--------CCCCCEECCCCCCCCCCCCCH-HHH
T ss_conf             9999999998-569964343778999999999999999999714888--------988663465520468789857-999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHH------HHCCCCCHHHHHHHHHHHHHHHHHHHH-------------HHHHCCC--
Q ss_conf             3340125799-99879999999985------310564026689999999999997533-------------2210224--
Q gi|254780473|r  290 WIWGHPEVYI-LVLPAFGIFSEVVA------TFSGKRLFGYNSMVYATLAITILSYTV-------------WLHHFFT--  347 (671)
Q Consensus       290 W~fGHPeVYI-liLPa~Gi~seiip------~fs~kplfgy~~~v~A~~~i~~lsf~V-------------W~HHmFt--  347 (671)
                      |.+|--.+-+ -++-+.-.+..+.-      +..|-|+|.....+-+..  .++++.|             ..-++|.  
T Consensus       146 ~i~~l~l~gissilg~iNfi~Ti~~~r~~gm~~~r~Plf~Ws~~vtsil--~l~a~PvLa~a~~~ll~dr~~gt~ff~~~  223 (514)
T d1v54a_         146 TIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVL--LLLSLPVLAAGITMLLTDRNLNTTFFDPA  223 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCTTCCGGGSCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHSCCCSSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCEECCC
T ss_conf             9999999999999988999999987616887414660689999999999--99998999999999999985798304777


Q ss_pred             CCCCH-HHHHHH---H-HHHHHHHHHHHHHHHHHHHHHCCCCCEEC-HHHHHHHHHHH
Q ss_conf             78758-899876---5-33467889877999987874258730224-37999999999
Q gi|254780473|r  348 MGSGA-NVNAFF---G-IMTMVIAVPTGAKIFNWLFTMRLGKVRFE-VPMMWTLGFMI  399 (671)
Q Consensus       348 ~G~~~-~~~~~F---~-i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~-~pml~~lgfi~  399 (671)
                      .|-++ ..|..|   + -.-.+..+|.-.-+..-+.+.-+.|.-+. ..|.+++..+.
T Consensus       224 ~Ggdp~L~qhLFWffgHPeVYi~iLPa~g~~s~ii~~~s~rk~~fg~~~~v~a~~~i~  281 (514)
T d1v54a_         224 GGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIG  281 (514)
T ss_dssp             GTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             7867999999998548860221299889999999998738874557199999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit I-like
superfamily: Cytochrome c oxidase subunit I-like
family: Cytochrome c oxidase subunit I-like
domain: Mitochondrial cytochrome c oxidase, subunit I
species: Cow (Bos taurus) [TaxId: 9913]