HHSEARCH alignment of GI: 254780473 and SCOP domain: d3dtua1

Alignment
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=97.55  E-value=0.0024  Score=37.31  Aligned_cols=259  Identities=17%  Similarity=0.208  Sum_probs=100.6

Q ss_pred             HHHHHHH-HHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHH
Q ss_conf             9987556-89999997236898831331566689999999-999733357888998777632980114654321013221
Q gi|254780473|r  210 GTTLSGI-NLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIM-IIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYIN  287 (671)
Q Consensus       210 gsll~~i-Nfi~TI~~~RapGm~l~rmPlf~W~~l~tsil-~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~  287 (671)
                      -.+.++. |+++-. ...|+.|..-|+..+.+-.+..+.+ .+.++-+-... ...  .-..|...+.|...-.+- ...
T Consensus       100 P~l~ggfgN~lvPl-~iGA~DmafPRlN~~sfWl~~~~~~l~~~s~~~~~~~-~~~--g~~~GWt~y~Pls~~~~~-~~v  174 (538)
T d3dtua1         100 PALFGGFGNYFMPL-HIGAPDMAFPRMNNLSYWLYVAGTSLAVASLFAPGGN-GQL--GSGIGWVLYPPLSTSESG-YST  174 (538)
T ss_dssp             HHHTTTHHHHHHHH-HHTCSSCSCHHHHHHHHHHHHHHHHHHHHHTTSBCGG-GSB--SCCSTTTTCTTHHHHCSS-SHH
T ss_pred             HHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCC--CCCCCCCCCCCCCCCCCC-CCH
T ss_conf             99999999999998-6699631038789999999889999999988327777-666--887785045454336898-509


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHH------HHCCCCCHHHHHHHHHHHHHHHHHHHH--------HH-HH----CCC
Q ss_conf             233340125799-99879999999985------310564026689999999999997533--------22-10----224
Q gi|254780473|r  288 LIWIWGHPEVYI-LVLPAFGIFSEVVA------TFSGKRLFGYNSMVYATLAITILSYTV--------WL-HH----FFT  347 (671)
Q Consensus       288 LFW~fGHPeVYI-liLPa~Gi~seiip------~fs~kplfgy~~~v~A~~~i~~lsf~V--------W~-HH----mFt  347 (671)
                      =+|.+|=-..=+ -++-+.-.+..++.      +..|-|+|.....+.+..  .++++.|        .. ++    +|.
T Consensus       175 d~~i~~l~l~gissi~~~iN~i~Ti~~~R~~gm~~~~~Plf~w~~l~t~~l--~l~~~PvL~~~~~~ll~Dr~~gt~ff~  252 (538)
T d3dtua1         175 DLAIFAVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWL--ILLALPVLAGAITMLLTDRNFGTTFFQ  252 (538)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCGGGSCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHSCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             999999999999999999999999999768999722024999999999999--999999999999999999827985327


Q ss_pred             --CCCCH-HHHHHH---H-HHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEE
Q ss_conf             --78758-899876---5-33467889877999987874258730224379999999999998875565303-4321112
Q gi|254780473|r  348 --MGSGA-NVNAFF---G-IMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLA-VPPADFT  419 (671)
Q Consensus       348 --~G~~~-~~~~~F---~-i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA-~~~~D~~  419 (671)
                        .|-+| ..+..|   + -...++.+|.--.+..-+-+.-|.++.=...|.+++..+.  +.|-....-.- ..+.   
T Consensus       253 ~~~GgdplL~qhLFWffgHPeVYi~ilPa~Gi~s~ii~~~s~k~lfg~~~~~~a~~~i~--~ls~~Vw~HHmf~~g~---  327 (538)
T d3dtua1         253 PSGGGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIG--VLGFVVWAHHMYTAGL---  327 (538)
T ss_dssp             GGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH--HHTTSCGGGGCTTSSC---
T ss_pred             CCCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH--HHHHHHHHCCCCCCCC---
T ss_conf             77785789999999994787024010137899999998604765547089999999999--9873231046436677---


Q ss_pred             ECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             127422044789999999999999999996244307674716899999999999999999999987640530
Q gi|254780473|r  420 LHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTR  491 (671)
Q Consensus       420 lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpR  491 (671)
                         ..+.-+-|......-++-. -..+.=|.--+.|.+..-+-    --++.+|+...|.   +.|+.|...
T Consensus       328 ---~~~~~~~f~~~T~~IaiPs-~i~vfnwl~Tl~gg~~~~~~----p~l~~l~fi~~F~---iGG~tGi~l  388 (538)
T d3dtua1         328 ---SLTQQSYFMMATMVIAVPT-GIKIFSWIATMWGGSIELKT----PMLWALGFLFLFT---VGGVTGIVL  388 (538)
T ss_dssp             ---CHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHTTSCBCCCH----HHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHH---HHCCCCCCC
T ss_conf             ---6115536899999999978-99999999999860636572----8999999999999---740120001


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit I-like
superfamily: Cytochrome c oxidase subunit I-like
family: Cytochrome c oxidase subunit I-like
domain: Bacterial aa3 type cytochrome c oxidase subunit I
species: Rhodobacter sphaeroides [TaxId: 1063]