PSIBLAST alignment of GI: 254780473 and protein with PDB id: 1ar1

gi|2914141|pdb|1AR1|A Chain A, Structure At 2.7 Angstrom Resolution Of The Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed With An Antibody Fv Fragment Length = 558
>gi|241913426|pdb|3HB3|A Chain A, High Resolution Crystal Structure Of Paracoccus Denitrificans Cytochrome C Oxidase Length = 558

 Score =  458 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 194/541 (35%), Positives = 299/541 (55%), Gaps = 27/541 (4%)

Query: 54  LWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDA------- 106
            +  WF S +HK IGI+Y+  + ++        + MR++             A       
Sbjct: 18  FFTRWFMSTNHKDIGILYLFTAGIVGLISVCFTVYMRMELQHPGVQYMCLEGARLIADAS 77

Query: 107 -------HHYDQIFTAHGVIMIFFVAMPMITG-IMNFVVPLQIGARDVSFPFLNNFSFWM 158
                  H ++ + T HGV+M+FFV +P + G   N+ +PL IGA D++FP LNN S+WM
Sbjct: 78  AECTPNGHLWNVMITYHGVLMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRLNNLSYWM 137

Query: 159 TVAGAVVIMCSLFIGEF-----ASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTL 213
            V G  + + SL          + VGW+ YPPLS      G  +D  I+ + ++G  + L
Sbjct: 138 YVCGVALGVASLLAPGGNDQMGSGVGWVLYPPLSTTEA--GYSMDLAIFAVHVSGASSIL 195

Query: 214 SGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNF 273
             IN++ T + MR PGMT+ K+P+F W+ F +  +I+ + P+L   + +L +DR  GT F
Sbjct: 196 GAINIITTFLNMRAPGMTLFKVPLFAWSVFITAWLILLSLPVLAGAITMLLMDRNFGTQF 255

Query: 274 FTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAI 333
           F    GG+P++Y +++W +GHPEVYI++LP FGI S V++TF+ K +FGY  MV A  AI
Sbjct: 256 FDPAGGGDPVLYQHILWFFGHPEVYIIILPGFGIISHVISTFAKKPIFGYLPMVLAMAAI 315

Query: 334 TILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMW 393
            IL + VW HH +T G      A+F + TM IAVPTG K+F+W+ TM  G + F+ PM+W
Sbjct: 316 GILGFVVWAHHMYTAGMSLTQQAYFMLATMTIAVPTGIKVFSWIATMWGGSIEFKTPMLW 375

Query: 394 TLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKA 453
             GF+  F +GG+TGV+L+  P D   H++ ++VAHFH  +  G VFG+FAG+ YW  K 
Sbjct: 376 AFGFLFLFTVGGVTGVVLSQAPLDRVYHDTYYVVAHFHYVMSLGAVFGIFAGVYYWIGKM 435

Query: 454 FGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAV 513
            G Q   + G++ FW  F+G  L F P + LG +G+ RR   Y       +  ++ +GA 
Sbjct: 436 SGRQYPEWAGQLHFWMMFIGSNLIFFPQHFLGRQGMPRRYIDYPV-EFAYWNNISSIGAY 494

Query: 514 LIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWD--GRTLEWSISSPSPQYNFAFTPIVSTI 571
           +       F+     +     ++   + + W+    TLEW++ SP P++ F   P     
Sbjct: 495 ISFASFLFFIGIVFYTLFAGKRV--NVPNYWNEHADTLEWTLPSPPPEHTFETLPKREDW 552

Query: 572 D 572
           D
Sbjct: 553 D 553