PSIBLAST alignment of GI: 254780473 and protein with PDB id: 1qle

>gi|6730476|pdb|1QLE|A Chain A, Cryo-Structure Of The Paracoccus Denitrificans Four-Subunit Cytochrome C Oxidase In The Completely Oxidized State Complexed With An Antibody Fv Fragment Length = 538

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/541 (35%), Positives = 299/541 (55%), Gaps = 27/541 (4%)

Query: 54  LWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDA------- 106
            +  WF S +HK IGI+Y+  + ++        + MR++             A       
Sbjct: 2   FFTRWFMSTNHKDIGILYLFTAGIVGLISVCFTVYMRMELQHPGVQYMCLEGARLIADAS 61

Query: 107 -------HHYDQIFTAHGVIMIFFVAMPMITG-IMNFVVPLQIGARDVSFPFLNNFSFWM 158
                  H ++ + T HGV+M+FFV +P + G   N+ +PL IGA D++FP LNN S+WM
Sbjct: 62  AECTPNGHLWNVMITYHGVLMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRLNNLSYWM 121

Query: 159 TVAGAVVIMCSLFIGEF-----ASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTL 213
            V G  + + SL          + VGW+ YPPLS      G  +D  I+ + ++G  + L
Sbjct: 122 YVCGVALGVASLLAPGGNDQMGSGVGWVLYPPLSTTEA--GYSMDLAIFAVHVSGASSIL 179

Query: 214 SGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNF 273
             IN++ T + MR PGMT+ K+P+F W+ F +  +I+ + P+L   + +L +DR  GT F
Sbjct: 180 GAINIITTFLNMRAPGMTLFKVPLFAWSVFITAWLILLSLPVLAGAITMLLMDRNFGTQF 239

Query: 274 FTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAI 333
           F    GG+P++Y +++W +GHPEVYI++LP FGI S V++TF+ K +FGY  MV A  AI
Sbjct: 240 FDPAGGGDPVLYQHILWFFGHPEVYIIILPGFGIISHVISTFAKKPIFGYLPMVLAMAAI 299

Query: 334 TILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMW 393
            IL + VW HH +T G      A+F + TM IAVPTG K+F+W+ TM  G + F+ PM+W
Sbjct: 300 GILGFVVWAHHMYTAGMSLTQQAYFMLATMTIAVPTGIKVFSWIATMWGGSIEFKTPMLW 359

Query: 394 TLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKA 453
             GF+  F +GG+TGV+L+  P D   H++ ++VAHFH  +  G VFG+FAG+ YW  K 
Sbjct: 360 AFGFLFLFTVGGVTGVVLSQAPLDRVYHDTYYVVAHFHYVMSLGAVFGIFAGVYYWIGKM 419

Query: 454 FGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAV 513
            G Q   + G++ FW  F+G  L F P + LG +G+ RR   Y       +  ++ +GA 
Sbjct: 420 SGRQYPEWAGQLHFWMMFIGSNLIFFPQHFLGRQGMPRRYIDYPV-EFAYWNNISSIGAY 478

Query: 514 LIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWD--GRTLEWSISSPSPQYNFAFTPIVSTI 571
           +       F+     +     ++   + + W+    TLEW++ SP P++ F   P     
Sbjct: 479 ISFASFLFFIGIVFYTLFAGKRV--NVPNYWNEHADTLEWTLPSPPPEHTFETLPKREDW 536

Query: 572 D 572
           D
Sbjct: 537 D 537