PSIBLAST alignment of GI: 254780473 and protein with PDB id: 1v54

>gi|40889823|pdb|1V54|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 514
>gi|40889836|pdb|1V54|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 514
 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 189/516 (36%), Positives = 291/516 (56%), Gaps = 9/516 (1%)

Query: 56  KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTA 115
             W  S +HK IG +Y++        G A ++++R +            D   Y+ + TA
Sbjct: 4   NRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLG---DDQIYNVVVTA 60

Query: 116 HGVIMIFFVAMPMITG-IMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGE 174
           H  +MIFF+ MP++ G   N++VPL IGA D++FP +NN SFW+     ++++ S  +  
Sbjct: 61  HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120

Query: 175 FASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMK 234
            A  GW  YPPL+G     G  VD  I+ L +AG+ + L  IN + TII M+ P M+  +
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180

Query: 235 MPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294
            P+FVW+   + ++++ + P+L A + +L  DR + T FF    GG+P++Y +L W +GH
Sbjct: 181 TPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240

Query: 295 PEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGAN 353
           PEVYIL+LP FG+ S +V  +SGK+  FGY  MV+A ++I  L + VW HH FT+G   +
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300

Query: 354 VNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAV 413
             A+F   TM+IA+PTG K+F+WL T+  G +++   MMW LGF+  F +GG+TG++LA 
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLAN 360

Query: 414 PPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVG 473
              D  LH++ ++VAHFH  +  G VF +  G V+WFP   GY LN  W K+ F   FVG
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVG 420

Query: 474 FYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533
             + F P + LGL G+ RR S Y D    ++  ++ +G+ +    V   V     +F ++
Sbjct: 421 VNMTFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFASK 479

Query: 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569
            ++            LEW    P P + F     V+
Sbjct: 480 REVLTVDL---TTTNLEWLNGCPPPYHTFEEPTYVN 512