PSIBLAST alignment of GI: 254780473 and protein with PDB id: 1v54
>gi|40889823|pdb|1V54|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 514
>gi|40889836|pdb|1V54|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 514
Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats.
Identities = 189/516 (36%), Positives = 291/516 (56%), Gaps = 9/516 (1%)
Query: 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTA 115
W S +HK IG +Y++ G A ++++R + D Y+ + TA
Sbjct: 4 NRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLG---DDQIYNVVVTA 60
Query: 116 HGVIMIFFVAMPMITG-IMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGE 174
H +MIFF+ MP++ G N++VPL IGA D++FP +NN SFW+ ++++ S +
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 175 FASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMK 234
A GW YPPL+G G VD I+ L +AG+ + L IN + TII M+ P M+ +
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180
Query: 235 MPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294
P+FVW+ + ++++ + P+L A + +L DR + T FF GG+P++Y +L W +GH
Sbjct: 181 TPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 295 PEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGAN 353
PEVYIL+LP FG+ S +V +SGK+ FGY MV+A ++I L + VW HH FT+G +
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300
Query: 354 VNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAV 413
A+F TM+IA+PTG K+F+WL T+ G +++ MMW LGF+ F +GG+TG++LA
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLAN 360
Query: 414 PPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVG 473
D LH++ ++VAHFH + G VF + G V+WFP GY LN W K+ F FVG
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVG 420
Query: 474 FYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533
+ F P + LGL G+ RR S Y D ++ ++ +G+ + V V +F ++
Sbjct: 421 VNMTFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFASK 479
Query: 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569
++ LEW P P + F V+
Sbjct: 480 REVLTVDL---TTTNLEWLNGCPPPYHTFEEPTYVN 512