RPSBLAST alignment of GI: 254780473 and protein with PDBid: 1v54

>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2zxw_A* Length = 514

 Score =  483 bits (1244), Expect = e-137
 Identities = 192/517 (37%), Positives = 293/517 (56%), Gaps = 9/517 (1%)

Query: 55  WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFT 114
              W  S +HK IG +Y++        G A ++++R +       G    D   Y+ + T
Sbjct: 3   INRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQP---GTLLGDDQIYNVVVT 59

Query: 115 AHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIG 173
           AH  +MIFF+ MP MI G  N++VPL IGA D++FP +NN SFW+     ++++ S  + 
Sbjct: 60  AHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVE 119

Query: 174 EFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMM 233
             A  GW  YPPL+G     G  VD  I+ L +AG+ + L  IN + TII M+ P M+  
Sbjct: 120 AGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQY 179

Query: 234 KMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293
           + P+FVW+   + ++++ + P+L A + +L  DR + T FF    GG+P++Y +L W +G
Sbjct: 180 QTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 239

Query: 294 HPEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGA 352
           HPEVYIL+LP FG+ S +V  +SGK+  FGY  MV+A ++I  L + VW HH FT+G   
Sbjct: 240 HPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDV 299

Query: 353 NVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLA 412
           +  A+F   TM+IA+PTG K+F+WL T+  G +++   MMW LGF+  F +GG+TG++LA
Sbjct: 300 DTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLA 359

Query: 413 VPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFV 472
               D  LH++ ++VAHFH  +  G VF +  G V+WFP   GY LN  W K+ F   FV
Sbjct: 360 NSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFV 419

Query: 473 GFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532
           G  + F P + LGL G+ RR S Y D    ++  ++ +G+ +    V   V     +F +
Sbjct: 420 GVNMTFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFAS 478

Query: 533 RSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569
           +   ++ +        LEW    P P + F     V+
Sbjct: 479 K---REVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVN 512