RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase
subunit I [Candidatus Liberibacter asiaticus str. psy62]
(671 letters)
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.24.1.1
Length = 663
Score = 704 bits (1819), Expect = 0.0
Identities = 405/652 (62%), Positives = 506/652 (77%), Gaps = 1/652 (0%)
Query: 11 IFGRLTINSIPYNIPIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFTSVDHKKIGIM 70
+FG+L+++++P++ PIV+ T + L G++++ ITY+ W YLWKEW TSVDHK++GIM
Sbjct: 1 MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYLWKEWLTSVDHKRLGIM 60
Query: 71 YIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT 130
YII+++VML RGFADAIMMR QQA+AS G G+L HHYDQIFTAHGVIMIFFVAMP +
Sbjct: 61 YIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVI 120
Query: 131 GIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGIS 190
G+MN VVPLQIGARDV+FPFLNN SFW TV G +++ SL +GEFA GWLAYPPLSGI
Sbjct: 121 GLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIE 180
Query: 191 YSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMII 250
YSPGVGVDY+IW LQ++GIGTTL+GIN VTI+KMR PGMTM KMPVF W + C+N++II
Sbjct: 181 YSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLII 240
Query: 251 AAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSE 310
A+FPILT T+ LLTLDRY+GT+FFTN +GGN MMYINLIW WGHPEVYIL+LP FG+FSE
Sbjct: 241 ASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSE 300
Query: 311 VVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTG 370
+ ATFS KRLFGY S+V+AT+ IT+LS+ VWLHHFFTMG+GANVNAFFGI TM+IA+PTG
Sbjct: 301 IAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTG 360
Query: 371 AKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHF 430
KIFNWLFTM G++ F M+WT+GF++TF +GGMTGVLLAVP ADF LHNSLFL+AHF
Sbjct: 361 VKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHF 420
Query: 431 HNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVT 490
HN IIGGVVFG FAG+ YW+PKAFG++LN WGK +FW W +GF++AFMPLYALG G+T
Sbjct: 421 HNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMT 480
Query: 491 RRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLE 550
RRLSQ D ++A GAVLI +G+ V+ VS +R + +D GDPW GRTLE
Sbjct: 481 RRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLE 540
Query: 551 WSISSPSPQYNFAFTPIVSTIDAWEHMKNRGYRY-PSEGFMPIHMPSNTATGIILAALSI 609
W+ SSP P YNFA P V DA+ MK +G Y + + IHMP N+ GI++AA S
Sbjct: 541 WATSSPPPFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFST 600
Query: 610 VFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSEEVHRK 661
+F FAM+W++WWLA++ F ++ I +F+ + Y V ++ E H
Sbjct: 601 IFGFAMIWHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQHFD 652
>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO
HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A*
1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A*
2ein_A* 2occ_A* 2zxw_A*
Length = 514
Score = 483 bits (1244), Expect = e-137
Identities = 192/517 (37%), Positives = 293/517 (56%), Gaps = 9/517 (1%)
Query: 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFT 114
W S +HK IG +Y++ G A ++++R + G D Y+ + T
Sbjct: 3 INRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQP---GTLLGDDQIYNVVVT 59
Query: 115 AHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIG 173
AH +MIFF+ MP MI G N++VPL IGA D++FP +NN SFW+ ++++ S +
Sbjct: 60 AHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVE 119
Query: 174 EFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMM 233
A GW YPPL+G G VD I+ L +AG+ + L IN + TII M+ P M+
Sbjct: 120 AGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQY 179
Query: 234 KMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293
+ P+FVW+ + ++++ + P+L A + +L DR + T FF GG+P++Y +L W +G
Sbjct: 180 QTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 239
Query: 294 HPEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGA 352
HPEVYIL+LP FG+ S +V +SGK+ FGY MV+A ++I L + VW HH FT+G
Sbjct: 240 HPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDV 299
Query: 353 NVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLA 412
+ A+F TM+IA+PTG K+F+WL T+ G +++ MMW LGF+ F +GG+TG++LA
Sbjct: 300 DTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLA 359
Query: 413 VPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFV 472
D LH++ ++VAHFH + G VF + G V+WFP GY LN W K+ F FV
Sbjct: 360 NSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFV 419
Query: 473 GFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532
G + F P + LGL G+ RR S Y D ++ ++ +G+ + V V +F +
Sbjct: 420 GVNMTFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFAS 478
Query: 533 RSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569
+ ++ + LEW P P + F V+
Sbjct: 479 K---REVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVN 512
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex,
oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter
sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A*
3fyi_A* 1m57_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Length = 566
Score = 462 bits (1191), Expect = e-131
Identities = 202/556 (36%), Positives = 305/556 (54%), Gaps = 40/556 (7%)
Query: 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQ---------------------- 92
+ WF S +HK IG++Y+ ++ A + MR++
Sbjct: 17 FTRWFMSTNHKDIGVLYLFTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGF 76
Query: 93 --QAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFP 149
S + H ++ + T HG++M+FFV +P + G N+ +PL IGA D++FP
Sbjct: 77 FQSLWPSAVENCTPNGHLWNVMITGHGILMMFFVVIPALFGGFGNYFMPLHIGAPDMAFP 136
Query: 150 FLNNFSFWMTVAGAVVIMCSLFIGEFAS-----VGWLAYPPLSGISYSPGVGVDYYIWGL 204
+NN S+W+ VAG + + SLF +GW+ YPPL + G D I+ +
Sbjct: 137 RMNNLSYWLYVAGTSLAVASLFAPGGNGQLGSGIGWVLYPPL--STSESGYSTDLAIFAV 194
Query: 205 QIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLT 264
++G + L IN++ T + MR PGMTM K+P+F W+ F + +I+ A P+L + +L
Sbjct: 195 HLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITMLL 254
Query: 265 LDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYN 324
DR GT FF GG+P++Y +++W +GHPEVYI+VLPAFGI S V+ATF+ K +FGY
Sbjct: 255 TDRNFGTTFFQPSGGGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYL 314
Query: 325 SMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGK 384
MVYA +AI +L + VW HH +T G ++F + TMVIAVPTG KIF+W+ TM G
Sbjct: 315 PMVYAMVAIGVLGFVVWAHHMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIATMWGGS 374
Query: 385 VRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFA 444
+ + PM+W LGF+ F +GG+TG++L+ D H++ ++VAHFH + G VFG+FA
Sbjct: 375 IELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGIFA 434
Query: 445 GIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVY 504
GI +W K G Q + GK+ FW FVG L F P + LG +G+ RR Y + +
Sbjct: 435 GIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPE-AFATW 493
Query: 505 YVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWD--GRTLEWSISSPSPQYNF 562
V+ LGA L F+ + + T + W+ TLEW+++SP P++ F
Sbjct: 494 NFVSSLGAFLSFASFLFFLGVIFYTL--TRGARVTANNYWNEHADTLEWTLTSPPPEHTF 551
Query: 563 AFTPIVSTIDAWEHMK 578
P + WE
Sbjct: 552 EQLP---KREDWERAP 564
>1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme,
heme-AS, integral membrane protein, oxidoreductase; HET:
BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.24.1.1
PDB: 2qpe_A* 2qpd_A* 3bvd_A* 1ehk_A* 3eh5_A* 3eh3_A*
3eh4_A*
Length = 568
Score = 283 bits (724), Expect = 1e-76
Identities = 111/541 (20%), Positives = 188/541 (34%), Gaps = 54/541 (9%)
Query: 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQA---IASGGGEGYLDAHHYDQI 112
+ + KK + +++L + L G L Y Q
Sbjct: 15 SRVYEAYPEKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQG 74
Query: 113 FTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFI 172
T HGV+ IM ++ ++ R L S+WM G VV L
Sbjct: 75 LTLHGVLNAIVFTQLFAQAIMVYLPARELNMRP--NMGLMWLSWWMAFIGLVVAALPLLA 132
Query: 173 GEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTM 232
E A+V + YPPL ++ +G ++ T I +V+ + +
Sbjct: 133 NE-ATVLYTFYPPLK-GHWAFYLGASVFVLS--------TWVSIYIVLDLWRRWKAANPG 182
Query: 233 MKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIW 292
P+ + A +M A L L L G G +P++ L W
Sbjct: 183 KVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVE-----GVDPLVARTLFWWT 237
Query: 293 GHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFT-MGSG 351
GHP VY +LPA+ I ++ +G +L A L +LS V HH F G
Sbjct: 238 GHPIVYFWLLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGID 297
Query: 352 ANVNAFFGIMTMVIAVPT-------------------GAKIFNWLFTMRLGKVRFEVPMM 392
++T+ +AVP+ G +F W+ + F P++
Sbjct: 298 PTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVL 357
Query: 393 WTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPK 452
LGF+ GG G++ A D+ +HN+ ++ HFH + V + + P
Sbjct: 358 GLLGFIP----GGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPN 413
Query: 453 AFGYQLNSFWGK---VSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE----DTTLQVYY 505
G ++ + W WF+G + + L+ GL V RR + V
Sbjct: 414 LTGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPM 473
Query: 506 VVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFT 565
V +L +++ + + F+ L+R + + P IS P +
Sbjct: 474 VFNVLAGIVLLVALLLFIYGLFSVLLSRERKPELAEAPL---PFAEVISGPEDRRLVLAM 530
Query: 566 P 566
Sbjct: 531 D 531
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices,
oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas
stutzeri}
Length = 474
Score = 204 bits (520), Expect = 5e-53
Identities = 65/491 (13%), Positives = 154/491 (31%), Gaps = 48/491 (9%)
Query: 60 TSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVI 119
T+ +K + + I+++V G + + Q +A L + ++ H
Sbjct: 7 TAYSYK-VVRQFAIMTVVWGIVGMGLGVFIAAQ--LAWPFLNFDLPWTSFGRLRPLHTNA 63
Query: 120 MIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVG 179
+IF + + V + P L F+FW ++ SL +G +S
Sbjct: 64 VIFAFGGCALFATSYYSVQRTCQTT-LFAPKLAAFTFWGWQLVILLAAISLPLGFTSSKE 122
Query: 180 WLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFV 239
+ I I + T+ K + + +
Sbjct: 123 YAELEWPIDILI----------------TIVWVAYAVVFFGTLAKRKVKHIYVGNWFFGA 166
Query: 240 WTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYI 299
+ + + ++ I + ++ + M+ W + +
Sbjct: 167 FILTVAILHVVNNLEIPVTAM----------KSYSLYAGATDAMVQW---WYGHNAVGFF 213
Query: 300 LVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFG 359
L GI V + + ++ Y + A+ + HH +
Sbjct: 214 LTAGFLGIMYYFVPKQAERPVYSYRLSIVHFWALITVYIWAGPHHLHYTALPDWAQSLGM 273
Query: 360 IMTMVIAVPTGAKIFNWLFTMRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPAD 417
+M++++ P+ + N + T+ K+R + + + + + + + G ++A+ +
Sbjct: 274 VMSLILLAPSWGGMINGMMTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVN 333
Query: 418 FTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLN--SFWGKVSFWCWFVGFY 475
H + + + H H +G V + + PK FG + FW +G
Sbjct: 334 ALSHYTDWTIGHVHAGALGWVAMVSIGALYHLVPKVFGREQMHSIGLINTHFWLATIGTV 393
Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQ-----------VYYVVALLGAVLIGIGVFSFVL 524
L ++ G+ + +D TL +VV ++G + G+
Sbjct: 394 LYIASMWVNGIAQGLMWRAINDDGTLTYSFVESLEASHPGFVVRMIGGAIFFAGMLVMAY 453
Query: 525 SFIVSFLNRSK 535
+ +
Sbjct: 454 NTWRTVQAAKP 464
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.8 bits (103), Expect = 1e-04
Identities = 54/308 (17%), Positives = 98/308 (31%), Gaps = 112/308 (36%)
Query: 397 FMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIG---GVVFGLF-AGIVYWFPK 452
+++T + G T P + ++ G G+V + A W +
Sbjct: 249 YVVTAKLLGFT-------PGELR--------SYLKGAT-GHSQGLVTAVAIAETDSW--E 290
Query: 453 AFGYQLNSFWG-KVSFWCWFVGF--YLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVAL 509
+F + + V F+ G Y A+ P +L S ED+
Sbjct: 291 SF-FV-SVRKAITVLFFI---GVRCYEAY-PNTSL-------PPSILEDSLEN------- 330
Query: 510 LGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGD-----PWDGRTLEWSIS---SPSPQYN 561
GV S +LS +S L + ++QD + P + + IS N
Sbjct: 331 ------NEGVPSPMLS--ISNLTQEQVQDYVNKTNSHLPAG-KQV--EISLVNGAK---N 376
Query: 562 FAFT-PIVS--TIDAW-EHMKN-RGY---RYP-SE-------GFMPIHMPSNT-----AT 600
+ P S ++ K G R P SE F+P+ P ++ A+
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 601 GII---LAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAK------D 651
+I L ++ F+ + + ++ TF+ +D +S D
Sbjct: 437 DLINKDLVKNNVSFNAKD------IQI---------PVYDTFDGSDLRVLSGSISERIVD 481
Query: 652 VAFSEEVH 659
V
Sbjct: 482 CIIRLPVK 489
Score = 31.5 bits (71), Expect = 0.72
Identities = 57/365 (15%), Positives = 98/365 (26%), Gaps = 178/365 (48%)
Query: 3 QNIDFHKFIFGRLT------INSIPYNIPIV----LGTFFVVA-------------LVGV 39
Q ++ +++ + SIP + P++ L + V A L G
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 40 S-----IIFAI------TYYRLWGYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIM 88
+ ++ A+ + W+ +F SV ++ +LF I
Sbjct: 271 TGHSQGLVTAVAIAETDS--------WESFFVSV----------RKAITVLFF-----IG 307
Query: 89 MRLQQAI------------ASGGGEG------------------YLDA--HH---YDQIF 113
+R +A + EG Y++ H Q+
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 114 TAHGVIMIFFVAMPMITGIMNFVV--P------LQIGARDVSFP---------------- 149
+ ++ G N VV P L + R P
Sbjct: 368 IS------------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 150 FLNNF--------SFWMTVAGAVVIMCSLFIGEFASVGW----LAYPPLSGISYSPGVGV 197
F N F S + A +I L +V + + P Y G
Sbjct: 416 FSNRFLPVASPFHSHLLVPASD-LINKDL---VKNNVSFNAKDIQIP-----VYDTFDGS 466
Query: 198 DYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILT 257
D L+ LSG ++ I+ ++PV W F
Sbjct: 467 D-----LR------VLSG-SISERIVDCII------RLPVK-WETTT-------QFK--- 497
Query: 258 ATLFL 262
AT L
Sbjct: 498 ATHIL 502
Score = 29.9 bits (67), Expect = 1.6
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 22/119 (18%)
Query: 313 ATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPT--- 369
ATF+G L Y ++ A+LA ++S + F G MTM +AVP
Sbjct: 1757 ATFAGHSLGEYAAL--ASLA-DVMSIESLVEVVFYRG-----------MTMQVAVPRDEL 1802
Query: 370 GAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVA 428
G + + + G+V L +++ +G TG L+ + ++ + N ++ A
Sbjct: 1803 GRSNYG-MIAINPGRVAASFSQE-ALQYVVE-RVGKRTGWLVEI--VNYNVENQQYVAA 1856
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein
mobIle metagenome structural genomics PSI-2 protein
structure initiative midwest center for structural
genomics; HET: MSE; 2.18A {Unidentified}
Length = 119
Score = 30.8 bits (69), Expect = 1.0
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 337 SYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAK 372
SY WL F S V G T + VP +
Sbjct: 75 SYAQWLQQIFAAASEQGVKLVLGPNTRWVNVPNELR 110
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 30.8 bits (69), Expect = 1.1
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 596 SNTATGIILAALSIVFSFAMVWYM-WWLALLSFISIVFYTIF 636
+ A + F + + W L L+ +
Sbjct: 183 GDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLS 224
>2iub_A CORA, divalent cation transport-related protein; membrane protein,
ION transporter; 2.9A {Thermotoga maritima} SCOP:
d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Length = 363
Score = 30.1 bits (67), Expect = 1.6
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 118 VIMIFFVAMPMITGI--MNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEF 175
+I F+ + I GI MNF P L + V + ++ + + F
Sbjct: 308 IIATIFMPLTFIAGIYGMNFEY----------MPELRWKWGYPVVLAVMGVIAVIMVVYF 357
Query: 176 ASVGWL 181
WL
Sbjct: 358 KKKKWL 363
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A
{Thermococcus SP}
Length = 526
Score = 29.5 bits (66), Expect = 2.9
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 570 TIDAWEHMKNRGYRYPSEGFMPIHMPSNTATGIILAALSIVFSFAMVWYMWWLALLSFIS 629
T AW H+ +G M +P + L+ +++ AL FI
Sbjct: 214 TTTAWGHVTGTNDVATIDGGMLGSLPIKFLQSLDLSGKWVLYQNKY-----AGALSDFII 268
Query: 630 IVFYTIFHTFN 640
I + H N
Sbjct: 269 ITAASPVHVLN 279
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN,
alpha/beta/alpha sandwich, PSI, protein structure
initiative; HET: FMN; 1.40A {Salmonella typhimurium}
SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A*
2z9b_A* 2z9c_A* 2z9d_A*
Length = 201
Score = 27.9 bits (61), Expect = 7.1
Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 12/106 (11%)
Query: 557 SPQYNFAFTPIVSTIDAWEHMKNRGYRYPSEGFMPIHMPSNTATGIILAALSIVFSFAMV 616
+P YNF + +RY +G + A +
Sbjct: 94 APMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTG-------KRAVVLSSRGGIHK 146
Query: 617 WYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSEEVHRKM 662
I+ D V A+ +A+ EV K
Sbjct: 147 DTPTD-----LIAPYLKVFLGFIGITDVNFVFAEGIAYGPEVAAKA 187
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell
inner membrane, cell membrane, membrane, transmembrane;
HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A
Length = 285
Score = 27.6 bits (61), Expect = 8.2
Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 10/204 (4%)
Query: 25 PIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFA 84
+V G F + L+ + A + + + + ++ ++ + L
Sbjct: 68 KLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASGRITWGQLAKNWLNVYFGNLVGALL 127
Query: 85 DAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGAR 144
++M L + G+ L+ H I + + + ++ V + R
Sbjct: 128 FVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGI-LANLMVCLAVWMSYSGR 186
Query: 145 DVSFPFLNNFSFWMT---------VAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGV 195
+ +A +I + I +FAS + + ++S
Sbjct: 187 SLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPENFSHLT 246
Query: 196 GVDYYIWGLQIAGIGTTLSGINLV 219
+++ L IG + G LV
Sbjct: 247 VMNFITDNLIPVTIGNIIGGGLLV 270
>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage
sensor, voltage dependent, ION channel, shaker, membrane
protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
2a79_B*
Length = 514
Score = 27.5 bits (60), Expect = 9.0
Identities = 14/109 (12%), Positives = 28/109 (25%), Gaps = 9/109 (8%)
Query: 425 FLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYAL 484
L ++ + F I + Y + F F+ A + + +
Sbjct: 331 ILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTV 390
Query: 485 GLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533
G + T + G+ + + IVS N
Sbjct: 391 GYGDM------VPTTIGGKIVGSLC---AIAGVLTIALPVPVIVSNFNY 430
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Length = 315
Score = 27.6 bits (61), Expect = 9.9
Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 22/132 (16%)
Query: 506 VVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEW-----------SIS 554
+ A +++ I + F + +K + +E ++
Sbjct: 45 LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLA 104
Query: 555 SPSPQYNFAFTPIVS--------TIDAWEHMKNRGYRYPSEGFM---PIHMPSNTATGII 603
+ + A P TI+ + YP +G I P+NT
Sbjct: 105 VLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFK 164
Query: 604 LAALSIVFSFAM 615
+ + S++ SF +
Sbjct: 165 VTSNSVMNSFFI 176
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.331 0.144 0.475
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 6,293,106
Number of extensions: 303710
Number of successful extensions: 1194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 138
Length of query: 671
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 572
Effective length of database: 3,293,074
Effective search space: 1883638328
Effective search space used: 1883638328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.3 bits)