RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase subunit I [Candidatus Liberibacter asiaticus str. psy62] (671 letters) >1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: f.24.1.1 Length = 663 Score = 704 bits (1819), Expect = 0.0 Identities = 405/652 (62%), Positives = 506/652 (77%), Gaps = 1/652 (0%) Query: 11 IFGRLTINSIPYNIPIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFTSVDHKKIGIM 70 +FG+L+++++P++ PIV+ T + L G++++ ITY+ W YLWKEW TSVDHK++GIM Sbjct: 1 MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYLWKEWLTSVDHKRLGIM 60 Query: 71 YIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT 130 YII+++VML RGFADAIMMR QQA+AS G G+L HHYDQIFTAHGVIMIFFVAMP + Sbjct: 61 YIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVI 120 Query: 131 GIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGIS 190 G+MN VVPLQIGARDV+FPFLNN SFW TV G +++ SL +GEFA GWLAYPPLSGI Sbjct: 121 GLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIE 180 Query: 191 YSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMII 250 YSPGVGVDY+IW LQ++GIGTTL+GIN VTI+KMR PGMTM KMPVF W + C+N++II Sbjct: 181 YSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLII 240 Query: 251 AAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSE 310 A+FPILT T+ LLTLDRY+GT+FFTN +GGN MMYINLIW WGHPEVYIL+LP FG+FSE Sbjct: 241 ASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILILPVFGVFSE 300 Query: 311 VVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTG 370 + ATFS KRLFGY S+V+AT+ IT+LS+ VWLHHFFTMG+GANVNAFFGI TM+IA+PTG Sbjct: 301 IAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTG 360 Query: 371 AKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHF 430 KIFNWLFTM G++ F M+WT+GF++TF +GGMTGVLLAVP ADF LHNSLFL+AHF Sbjct: 361 VKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHF 420 Query: 431 HNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVT 490 HN IIGGVVFG FAG+ YW+PKAFG++LN WGK +FW W +GF++AFMPLYALG G+T Sbjct: 421 HNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMT 480 Query: 491 RRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLE 550 RRLSQ D ++A GAVLI +G+ V+ VS +R + +D GDPW GRTLE Sbjct: 481 RRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLE 540 Query: 551 WSISSPSPQYNFAFTPIVSTIDAWEHMKNRGYRY-PSEGFMPIHMPSNTATGIILAALSI 609 W+ SSP P YNFA P V DA+ MK +G Y + + IHMP N+ GI++AA S Sbjct: 541 WATSSPPPFYNFAVVPHVHERDAFWEMKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFST 600 Query: 610 VFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSEEVHRK 661 +F FAM+W++WWLA++ F ++ I +F+ + Y V ++ E H Sbjct: 601 IFGFAMIWHIWWLAIVGFAGMIITWIVKSFDEDVDYYVPVAEIEKLENQHFD 652 >1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.24.1.1 PDB: 1oco_A* 1occ_A* 1ocz_A* 1ocr_A* 1v55_A* 2dyr_A* 2dys_A* 2eij_A* 2eik_A* 2eil_A* 2eim_A* 2ein_A* 2occ_A* 2zxw_A* Length = 514 Score = 483 bits (1244), Expect = e-137 Identities = 192/517 (37%), Positives = 293/517 (56%), Gaps = 9/517 (1%) Query: 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFT 114 W S +HK IG +Y++ G A ++++R + G D Y+ + T Sbjct: 3 INRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQP---GTLLGDDQIYNVVVT 59 Query: 115 AHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIG 173 AH +MIFF+ MP MI G N++VPL IGA D++FP +NN SFW+ ++++ S + Sbjct: 60 AHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVE 119 Query: 174 EFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMM 233 A GW YPPL+G G VD I+ L +AG+ + L IN + TII M+ P M+ Sbjct: 120 AGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQY 179 Query: 234 KMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293 + P+FVW+ + ++++ + P+L A + +L DR + T FF GG+P++Y +L W +G Sbjct: 180 QTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 239 Query: 294 HPEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGA 352 HPEVYIL+LP FG+ S +V +SGK+ FGY MV+A ++I L + VW HH FT+G Sbjct: 240 HPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDV 299 Query: 353 NVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLA 412 + A+F TM+IA+PTG K+F+WL T+ G +++ MMW LGF+ F +GG+TG++LA Sbjct: 300 DTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLA 359 Query: 413 VPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFV 472 D LH++ ++VAHFH + G VF + G V+WFP GY LN W K+ F FV Sbjct: 360 NSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFV 419 Query: 473 GFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532 G + F P + LGL G+ RR S Y D ++ ++ +G+ + V V +F + Sbjct: 420 GVNMTFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFAS 478 Query: 533 RSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569 + ++ + LEW P P + F V+ Sbjct: 479 K---REVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVN 512 >2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A* Length = 566 Score = 462 bits (1191), Expect = e-131 Identities = 202/556 (36%), Positives = 305/556 (54%), Gaps = 40/556 (7%) Query: 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQ---------------------- 92 + WF S +HK IG++Y+ ++ A + MR++ Sbjct: 17 FTRWFMSTNHKDIGVLYLFTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGF 76 Query: 93 --QAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFP 149 S + H ++ + T HG++M+FFV +P + G N+ +PL IGA D++FP Sbjct: 77 FQSLWPSAVENCTPNGHLWNVMITGHGILMMFFVVIPALFGGFGNYFMPLHIGAPDMAFP 136 Query: 150 FLNNFSFWMTVAGAVVIMCSLFIGEFAS-----VGWLAYPPLSGISYSPGVGVDYYIWGL 204 +NN S+W+ VAG + + SLF +GW+ YPPL + G D I+ + Sbjct: 137 RMNNLSYWLYVAGTSLAVASLFAPGGNGQLGSGIGWVLYPPL--STSESGYSTDLAIFAV 194 Query: 205 QIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLT 264 ++G + L IN++ T + MR PGMTM K+P+F W+ F + +I+ A P+L + +L Sbjct: 195 HLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITMLL 254 Query: 265 LDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYN 324 DR GT FF GG+P++Y +++W +GHPEVYI+VLPAFGI S V+ATF+ K +FGY Sbjct: 255 TDRNFGTTFFQPSGGGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYL 314 Query: 325 SMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGK 384 MVYA +AI +L + VW HH +T G ++F + TMVIAVPTG KIF+W+ TM G Sbjct: 315 PMVYAMVAIGVLGFVVWAHHMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIATMWGGS 374 Query: 385 VRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFA 444 + + PM+W LGF+ F +GG+TG++L+ D H++ ++VAHFH + G VFG+FA Sbjct: 375 IELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGIFA 434 Query: 445 GIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVY 504 GI +W K G Q + GK+ FW FVG L F P + LG +G+ RR Y + + Sbjct: 435 GIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPE-AFATW 493 Query: 505 YVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWD--GRTLEWSISSPSPQYNF 562 V+ LGA L F+ + + T + W+ TLEW+++SP P++ F Sbjct: 494 NFVSSLGAFLSFASFLFFLGVIFYTL--TRGARVTANNYWNEHADTLEWTLTSPPPEHTF 551 Query: 563 AFTPIVSTIDAWEHMK 578 P + WE Sbjct: 552 EQLP---KREDWERAP 564 >1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.24.1.1 PDB: 2qpe_A* 2qpd_A* 3bvd_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A* Length = 568 Score = 283 bits (724), Expect = 1e-76 Identities = 111/541 (20%), Positives = 188/541 (34%), Gaps = 54/541 (9%) Query: 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQA---IASGGGEGYLDAHHYDQI 112 + + KK + +++L + L G L Y Q Sbjct: 15 SRVYEAYPEKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQG 74 Query: 113 FTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFI 172 T HGV+ IM ++ ++ R L S+WM G VV L Sbjct: 75 LTLHGVLNAIVFTQLFAQAIMVYLPARELNMRP--NMGLMWLSWWMAFIGLVVAALPLLA 132 Query: 173 GEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTM 232 E A+V + YPPL ++ +G ++ T I +V+ + + Sbjct: 133 NE-ATVLYTFYPPLK-GHWAFYLGASVFVLS--------TWVSIYIVLDLWRRWKAANPG 182 Query: 233 MKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIW 292 P+ + A +M A L L L G G +P++ L W Sbjct: 183 KVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVE-----GVDPLVARTLFWWT 237 Query: 293 GHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFT-MGSG 351 GHP VY +LPA+ I ++ +G +L A L +LS V HH F G Sbjct: 238 GHPIVYFWLLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGID 297 Query: 352 ANVNAFFGIMTMVIAVPT-------------------GAKIFNWLFTMRLGKVRFEVPMM 392 ++T+ +AVP+ G +F W+ + F P++ Sbjct: 298 PTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVL 357 Query: 393 WTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPK 452 LGF+ GG G++ A D+ +HN+ ++ HFH + V + + P Sbjct: 358 GLLGFIP----GGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPN 413 Query: 453 AFGYQLNSFWGK---VSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE----DTTLQVYY 505 G ++ + W WF+G + + L+ GL V RR + V Sbjct: 414 LTGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPM 473 Query: 506 VVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFT 565 V +L +++ + + F+ L+R + + P IS P + Sbjct: 474 VFNVLAGIVLLVALLLFIYGLFSVLLSRERKPELAEAPL---PFAEVISGPEDRRLVLAM 530 Query: 566 P 566 Sbjct: 531 D 531 >3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Length = 474 Score = 204 bits (520), Expect = 5e-53 Identities = 65/491 (13%), Positives = 154/491 (31%), Gaps = 48/491 (9%) Query: 60 TSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVI 119 T+ +K + + I+++V G + + Q +A L + ++ H Sbjct: 7 TAYSYK-VVRQFAIMTVVWGIVGMGLGVFIAAQ--LAWPFLNFDLPWTSFGRLRPLHTNA 63 Query: 120 MIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVG 179 +IF + + V + P L F+FW ++ SL +G +S Sbjct: 64 VIFAFGGCALFATSYYSVQRTCQTT-LFAPKLAAFTFWGWQLVILLAAISLPLGFTSSKE 122 Query: 180 WLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFV 239 + I I + T+ K + + + Sbjct: 123 YAELEWPIDILI----------------TIVWVAYAVVFFGTLAKRKVKHIYVGNWFFGA 166 Query: 240 WTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYI 299 + + + ++ I + ++ + M+ W + + Sbjct: 167 FILTVAILHVVNNLEIPVTAM----------KSYSLYAGATDAMVQW---WYGHNAVGFF 213 Query: 300 LVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFG 359 L GI V + + ++ Y + A+ + HH + Sbjct: 214 LTAGFLGIMYYFVPKQAERPVYSYRLSIVHFWALITVYIWAGPHHLHYTALPDWAQSLGM 273 Query: 360 IMTMVIAVPTGAKIFNWLFTMRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPAD 417 +M++++ P+ + N + T+ K+R + + + + + + + G ++A+ + Sbjct: 274 VMSLILLAPSWGGMINGMMTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVN 333 Query: 418 FTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLN--SFWGKVSFWCWFVGFY 475 H + + + H H +G V + + PK FG + FW +G Sbjct: 334 ALSHYTDWTIGHVHAGALGWVAMVSIGALYHLVPKVFGREQMHSIGLINTHFWLATIGTV 393 Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQ-----------VYYVVALLGAVLIGIGVFSFVL 524 L ++ G+ + +D TL +VV ++G + G+ Sbjct: 394 LYIASMWVNGIAQGLMWRAINDDGTLTYSFVESLEASHPGFVVRMIGGAIFFAGMLVMAY 453 Query: 525 SFIVSFLNRSK 535 + + Sbjct: 454 NTWRTVQAAKP 464 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 43.8 bits (103), Expect = 1e-04 Identities = 54/308 (17%), Positives = 98/308 (31%), Gaps = 112/308 (36%) Query: 397 FMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIG---GVVFGLF-AGIVYWFPK 452 +++T + G T P + ++ G G+V + A W + Sbjct: 249 YVVTAKLLGFT-------PGELR--------SYLKGAT-GHSQGLVTAVAIAETDSW--E 290 Query: 453 AFGYQLNSFWG-KVSFWCWFVGF--YLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVAL 509 +F + + V F+ G Y A+ P +L S ED+ Sbjct: 291 SF-FV-SVRKAITVLFFI---GVRCYEAY-PNTSL-------PPSILEDSLEN------- 330 Query: 510 LGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGD-----PWDGRTLEWSIS---SPSPQYN 561 GV S +LS +S L + ++QD + P + + IS N Sbjct: 331 ------NEGVPSPMLS--ISNLTQEQVQDYVNKTNSHLPAG-KQV--EISLVNGAK---N 376 Query: 562 FAFT-PIVS--TIDAW-EHMKN-RGY---RYP-SE-------GFMPIHMPSNT-----AT 600 + P S ++ K G R P SE F+P+ P ++ A+ Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436 Query: 601 GII---LAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAK------D 651 +I L ++ F+ + + ++ TF+ +D +S D Sbjct: 437 DLINKDLVKNNVSFNAKD------IQI---------PVYDTFDGSDLRVLSGSISERIVD 481 Query: 652 VAFSEEVH 659 V Sbjct: 482 CIIRLPVK 489 Score = 31.5 bits (71), Expect = 0.72 Identities = 57/365 (15%), Positives = 98/365 (26%), Gaps = 178/365 (48%) Query: 3 QNIDFHKFIFGRLT------INSIPYNIPIV----LGTFFVVA-------------LVGV 39 Q ++ +++ + SIP + P++ L + V A L G Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270 Query: 40 S-----IIFAI------TYYRLWGYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIM 88 + ++ A+ + W+ +F SV ++ +LF I Sbjct: 271 TGHSQGLVTAVAIAETDS--------WESFFVSV----------RKAITVLFF-----IG 307 Query: 89 MRLQQAI------------ASGGGEG------------------YLDA--HH---YDQIF 113 +R +A + EG Y++ H Q+ Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367 Query: 114 TAHGVIMIFFVAMPMITGIMNFVV--P------LQIGARDVSFP---------------- 149 + ++ G N VV P L + R P Sbjct: 368 IS------------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415 Query: 150 FLNNF--------SFWMTVAGAVVIMCSLFIGEFASVGW----LAYPPLSGISYSPGVGV 197 F N F S + A +I L +V + + P Y G Sbjct: 416 FSNRFLPVASPFHSHLLVPASD-LINKDL---VKNNVSFNAKDIQIP-----VYDTFDGS 466 Query: 198 DYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILT 257 D L+ LSG ++ I+ ++PV W F Sbjct: 467 D-----LR------VLSG-SISERIVDCII------RLPVK-WETTT-------QFK--- 497 Query: 258 ATLFL 262 AT L Sbjct: 498 ATHIL 502 Score = 29.9 bits (67), Expect = 1.6 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 22/119 (18%) Query: 313 ATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPT--- 369 ATF+G L Y ++ A+LA ++S + F G MTM +AVP Sbjct: 1757 ATFAGHSLGEYAAL--ASLA-DVMSIESLVEVVFYRG-----------MTMQVAVPRDEL 1802 Query: 370 GAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVA 428 G + + + G+V L +++ +G TG L+ + ++ + N ++ A Sbjct: 1803 GRSNYG-MIAINPGRVAASFSQE-ALQYVVE-RVGKRTGWLVEI--VNYNVENQQYVAA 1856 >3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified} Length = 119 Score = 30.8 bits (69), Expect = 1.0 Identities = 11/36 (30%), Positives = 13/36 (36%) Query: 337 SYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAK 372 SY WL F S V G T + VP + Sbjct: 75 SYAQWLQQIFAAASEQGVKLVLGPNTRWVNVPNELR 110 >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 Score = 30.8 bits (69), Expect = 1.1 Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 1/42 (2%) Query: 596 SNTATGIILAALSIVFSFAMVWYM-WWLALLSFISIVFYTIF 636 + A + F + + W L L+ + Sbjct: 183 GDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLS 224 >2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Length = 363 Score = 30.1 bits (67), Expect = 1.6 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 12/66 (18%) Query: 118 VIMIFFVAMPMITGI--MNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEF 175 +I F+ + I GI MNF P L + V + ++ + + F Sbjct: 308 IIATIFMPLTFIAGIYGMNFEY----------MPELRWKWGYPVVLAVMGVIAVIMVVYF 357 Query: 176 ASVGWL 181 WL Sbjct: 358 KKKKWL 363 >2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP} Length = 526 Score = 29.5 bits (66), Expect = 2.9 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 570 TIDAWEHMKNRGYRYPSEGFMPIHMPSNTATGIILAALSIVFSFAMVWYMWWLALLSFIS 629 T AW H+ +G M +P + L+ +++ AL FI Sbjct: 214 TTTAWGHVTGTNDVATIDGGMLGSLPIKFLQSLDLSGKWVLYQNKY-----AGALSDFII 268 Query: 630 IVFYTIFHTFN 640 I + H N Sbjct: 269 ITAASPVHVLN 279 >1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* Length = 201 Score = 27.9 bits (61), Expect = 7.1 Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 12/106 (11%) Query: 557 SPQYNFAFTPIVSTIDAWEHMKNRGYRYPSEGFMPIHMPSNTATGIILAALSIVFSFAMV 616 +P YNF + +RY +G + A + Sbjct: 94 APMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTG-------KRAVVLSSRGGIHK 146 Query: 617 WYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSEEVHRKM 662 I+ D V A+ +A+ EV K Sbjct: 147 DTPTD-----LIAPYLKVFLGFIGITDVNFVFAEGIAYGPEVAAKA 187 >3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A Length = 285 Score = 27.6 bits (61), Expect = 8.2 Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 10/204 (4%) Query: 25 PIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFA 84 +V G F + L+ + A + + + + ++ ++ + L Sbjct: 68 KLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASGRITWGQLAKNWLNVYFGNLVGALL 127 Query: 85 DAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGAR 144 ++M L + G+ L+ H I + + + ++ V + R Sbjct: 128 FVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGI-LANLMVCLAVWMSYSGR 186 Query: 145 DVSFPFLNNFSFWMT---------VAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGV 195 + +A +I + I +FAS + + ++S Sbjct: 187 SLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPENFSHLT 246 Query: 196 GVDYYIWGLQIAGIGTTLSGINLV 219 +++ L IG + G LV Sbjct: 247 VMNFITDNLIPVTIGNIIGGGLLV 270 >2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage sensor, voltage dependent, ION channel, shaker, membrane protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 2a79_B* Length = 514 Score = 27.5 bits (60), Expect = 9.0 Identities = 14/109 (12%), Positives = 28/109 (25%), Gaps = 9/109 (8%) Query: 425 FLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYAL 484 L ++ + F I + Y + F F+ A + + + Sbjct: 331 ILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTV 390 Query: 485 GLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533 G + T + G+ + + IVS N Sbjct: 391 GYGDM------VPTTIGGKIVGSLC---AIAGVLTIALPVPVIVSNFNY 430 >1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Length = 315 Score = 27.6 bits (61), Expect = 9.9 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 22/132 (16%) Query: 506 VVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEW-----------SIS 554 + A +++ I + F + +K + +E ++ Sbjct: 45 LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLA 104 Query: 555 SPSPQYNFAFTPIVS--------TIDAWEHMKNRGYRYPSEGFM---PIHMPSNTATGII 603 + + A P TI+ + YP +G I P+NT Sbjct: 105 VLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFK 164 Query: 604 LAALSIVFSFAM 615 + + S++ SF + Sbjct: 165 VTSNSVMNSFFI 176 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.331 0.144 0.475 Gapped Lambda K H 0.267 0.0568 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 6,293,106 Number of extensions: 303710 Number of successful extensions: 1194 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1088 Number of HSP's successfully gapped: 138 Length of query: 671 Length of database: 5,693,230 Length adjustment: 99 Effective length of query: 572 Effective length of database: 3,293,074 Effective search space: 1883638328 Effective search space used: 1883638328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 60 (27.3 bits)