RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase
subunit I [Candidatus Liberibacter asiaticus str. psy62]
(671 letters)
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
{Cow (Bos taurus) [TaxId: 9913]}
Length = 514
Score = 463 bits (1194), Expect = e-131
Identities = 192/518 (37%), Positives = 293/518 (56%), Gaps = 9/518 (1%)
Query: 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFT 114
W S +HK IG +Y++ G A ++++R + G D Y+ + T
Sbjct: 3 INRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQP---GTLLGDDQIYNVVVT 59
Query: 115 AHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIG 173
AH +MIFF+ MP MI G N++VPL IGA D++FP +NN SFW+ ++++ S +
Sbjct: 60 AHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVE 119
Query: 174 EFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMM 233
A GW YPPL+G G VD I+ L +AG+ + L IN + TII M+ P M+
Sbjct: 120 AGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQY 179
Query: 234 KMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293
+ P+FVW+ + ++++ + P+L A + +L DR + T FF GG+P++Y +L W +G
Sbjct: 180 QTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 239
Query: 294 HPEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGA 352
HPEVYIL+LP FG+ S +V +SGK+ FGY MV+A ++I L + VW HH FT+G
Sbjct: 240 HPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDV 299
Query: 353 NVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLA 412
+ A+F TM+IA+PTG K+F+WL T+ G +++ MMW LGF+ F +GG+TG++LA
Sbjct: 300 DTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLA 359
Query: 413 VPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFV 472
D LH++ ++VAHFH + G VF + G V+WFP GY LN W K+ F FV
Sbjct: 360 NSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFV 419
Query: 473 GFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532
G + F P + LGL G+ RR S Y D ++ ++ +G+ + V V +F +
Sbjct: 420 GVNMTFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFAS 478
Query: 533 RSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVST 570
+ ++ + LEW P P + F V+
Sbjct: 479 K---REVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNL 513
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase
subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 538
Score = 447 bits (1151), Expect = e-126
Identities = 199/542 (36%), Positives = 302/542 (55%), Gaps = 37/542 (6%)
Query: 53 YLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQ-------------------- 92
+ WF S +HK IG++Y+ ++ A + MR++
Sbjct: 2 GFFTRWFMSTNHKDIGVLYLFTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVK 61
Query: 93 ----QAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVS 147
S + H ++ + T HG++M+FFV +P + G N+ +PL IGA D++
Sbjct: 62 GFFQSLWPSAVENCTPNGHLWNVMITGHGILMMFFVVIPALFGGFGNYFMPLHIGAPDMA 121
Query: 148 FPFLNNFSFWMTVAGAVVIMCSLFIGEF-----ASVGWLAYPPLSGISYSPGVGVDYYIW 202
FP +NN S+W+ VAG + + SLF + +GW+ YPPL + G D I+
Sbjct: 122 FPRMNNLSYWLYVAGTSLAVASLFAPGGNGQLGSGIGWVLYPPL--STSESGYSTDLAIF 179
Query: 203 GLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFL 262
+ ++G + L IN++ T + MR PGMTM K+P+F W+ F + +I+ A P+L + +
Sbjct: 180 AVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITM 239
Query: 263 LTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFG 322
L DR GT FF GG+P++Y +++W +GHPEVYI+VLPAFGI S V+ATF+ K +FG
Sbjct: 240 LLTDRNFGTTFFQPSGGGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFG 299
Query: 323 YNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRL 382
Y MVYA +AI +L + VW HH +T G ++F + TMVIAVPTG KIF+W+ TM
Sbjct: 300 YLPMVYAMVAIGVLGFVVWAHHMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIATMWG 359
Query: 383 GKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGL 442
G + + PM+W LGF+ F +GG+TG++L+ D H++ ++VAHFH + G VFG+
Sbjct: 360 GSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGI 419
Query: 443 FAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQ 502
FAGI +W K G Q + GK+ FW FVG L F P + LG +G+ RR Y +
Sbjct: 420 FAGIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPE-AFA 478
Query: 503 VYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWD--GRTLEWSISSPSPQY 560
+ V+ LGA L F+ + + T + W+ TLEW+++SP P++
Sbjct: 479 TWNFVSSLGAFLSFASFLFFLGVIFYTL--TRGARVTANNYWNEHADTLEWTLTSPPPEH 536
Query: 561 NF 562
F
Sbjct: 537 TF 538
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 403 bits (1037), Expect = e-113
Identities = 348/501 (69%), Positives = 413/501 (82%)
Query: 62 VDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMI 121
VDHK++GIMYII+++VML RGFADAIMMR QQA+AS G G+L HHYDQIFTAHGVIMI
Sbjct: 1 VDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMI 60
Query: 122 FFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWL 181
FFVAMP + G+MN VVPLQIGARDV+FPFLNN SFW TV G +++ SL +GEFA GWL
Sbjct: 61 FFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWL 120
Query: 182 AYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWT 241
AYPPLSGI YSPGVGVDY+IW LQ++GIGTTL+GIN VTI+KMR PGMTM KMPVF W
Sbjct: 121 AYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWA 180
Query: 242 AFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILV 301
+ C+N++IIA+FPILT T+ LLTLDRY+GT+FFTN +GGN MMYINLIW WGHPEVYIL+
Sbjct: 181 SLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILI 240
Query: 302 LPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIM 361
LP FG+FSE+ ATFS KRLFGY S+V+AT+ IT+LS+ VWLHHFFTMG+GANVNAFFGI
Sbjct: 241 LPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGIT 300
Query: 362 TMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLH 421
TM+IA+PTG KIFNWLFTM G++ F M+WT+GF++TF +GGMTGVLLAVP ADF LH
Sbjct: 301 TMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLH 360
Query: 422 NSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPL 481
NSLFL+AHFHN IIGGVVFG FAG+ YW+PKAFG++LN WGK +FW W +GF++AFMPL
Sbjct: 361 NSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPL 420
Query: 482 YALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIG 541
YALG G+TRRLSQ D ++A GAVLI +G+ V+ VS +R + +D G
Sbjct: 421 YALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTG 480
Query: 542 DPWDGRTLEWSISSPSPQYNF 562
DPW GRTLEW+ SSP P YNF
Sbjct: 481 DPWGGRTLEWATSSPPPFYNF 501
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 265 bits (679), Expect = 8e-72
Identities = 111/533 (20%), Positives = 187/533 (35%), Gaps = 54/533 (10%)
Query: 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQA---IASGGGEGYLDAHHYDQIFTAHGVIM 120
KK + +++L + L G L Y Q T HGV+
Sbjct: 4 EKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLN 63
Query: 121 IFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGW 180
IM ++ ++ R L S+WM G VV L E A+V +
Sbjct: 64 AIVFTQLFAQAIMVYLPARELNMRP--NMGLMWLSWWMAFIGLVVAALPLLANE-ATVLY 120
Query: 181 LAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVW 240
YPPL ++ +G ++ T I +V+ + + P+ +
Sbjct: 121 TFYPPLK-GHWAFYLGASVFVLS--------TWVSIYIVLDLWRRWKAANPGKVTPLVTY 171
Query: 241 TAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL 300
A +M A L L L G G +P++ L W GHP VY
Sbjct: 172 MAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVE-----GVDPLVARTLFWWTGHPIVYFW 226
Query: 301 VLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFT-MGSGANVNAFFG 359
+LPA+ I ++ +G +L A L +LS V HH F G
Sbjct: 227 LLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHS 286
Query: 360 IMTMVIAVPT-------------------GAKIFNWLFTMRLGKVRFEVPMMWTLGFMIT 400
++T+ +AVP+ G +F W+ + F P++ LGF+
Sbjct: 287 VLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLGFIP- 345
Query: 401 FLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNS 460
GG G++ A D+ +HN+ ++ HFH + V + + P G ++
Sbjct: 346 ---GGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISD 402
Query: 461 FWGKVS---FWCWFVGFYLAFMPLYALGLKGVTRRLSQYE----DTTLQVYYVVALLGAV 513
++ W WF+G + + L+ GL V RR + V V +L +
Sbjct: 403 AQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGI 462
Query: 514 LIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTP 566
++ + + F+ L+R + + P IS P +
Sbjct: 463 VLLVALLLFIYGLFSVLLSRERKPELAEAPL---PFAEVISGPEDRRLVLAMD 512
>d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 28.2 bits (62), Expect = 2.1
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Query: 557 SPQYNFAFTPIVSTIDAWEHMKNRGYRYPSEGFMPIHMPSNTATGIILAALSIVFSFAMV 616
+P YNF + + +RY G P + + +I + I
Sbjct: 93 APMYNFNISTQLKNYFDLVARAGVTFRYTENG--PEGLVTGKKAIVITSRGGIHKDGPTD 150
Query: 617 WYMWWL-ALLSFISIVFYTIFHTFNYNDGYEVSAKDVA 653
+L L FI I G E++AK +
Sbjct: 151 LVTPYLSTFLGFIGITDVKFVFAEGIAYGPEMAAKAQS 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.331 0.144 0.475
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,751,244
Number of extensions: 135835
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 73
Length of query: 671
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 580
Effective length of database: 1,158,166
Effective search space: 671736280
Effective search space used: 671736280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.6 bits)