BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase
subunit I [Candidatus Liberibacter asiaticus str. psy62]
         (671 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase subunit I [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 671

 Score = 1357 bits (3512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/671 (100%), Positives = 671/671 (100%)

Query: 1   MLQNIDFHKFIFGRLTINSIPYNIPIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFT 60
           MLQNIDFHKFIFGRLTINSIPYNIPIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFT
Sbjct: 1   MLQNIDFHKFIFGRLTINSIPYNIPIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFT 60

Query: 61  SVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIM 120
           SVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIM
Sbjct: 61  SVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIM 120

Query: 121 IFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGW 180
           IFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGW
Sbjct: 121 IFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGW 180

Query: 181 LAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVW 240
           LAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVW
Sbjct: 181 LAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVW 240

Query: 241 TAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL 300
           TAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL
Sbjct: 241 TAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL 300

Query: 301 VLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGI 360
           VLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGI
Sbjct: 301 VLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGI 360

Query: 361 MTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTL 420
           MTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTL
Sbjct: 361 MTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTL 420

Query: 421 HNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMP 480
           HNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMP
Sbjct: 421 HNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMP 480

Query: 481 LYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTI 540
           LYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTI
Sbjct: 481 LYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTI 540

Query: 541 GDPWDGRTLEWSISSPSPQYNFAFTPIVSTIDAWEHMKNRGYRYPSEGFMPIHMPSNTAT 600
           GDPWDGRTLEWSISSPSPQYNFAFTPIVSTIDAWEHMKNRGYRYPSEGFMPIHMPSNTAT
Sbjct: 541 GDPWDGRTLEWSISSPSPQYNFAFTPIVSTIDAWEHMKNRGYRYPSEGFMPIHMPSNTAT 600

Query: 601 GIILAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSEEVHR 660
           GIILAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSEEVHR
Sbjct: 601 GIILAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSEEVHR 660

Query: 661 KMNMPKDREHC 671
           KMNMPKDREHC
Sbjct: 661 KMNMPKDREHC 671


>gi|254780944|ref|YP_003065357.1| hypothetical protein CLIBASIA_04215 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 228

 Score = 27.3 bits (59), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 430 FHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPL 481
           FH +I   V    FAG +   P A      + W  +S   WF GF + ++P+
Sbjct: 6   FHTSISAKVRNNFFAGFIICAPIAI-----TIWLSLSLIHWFDGFIVPYIPM 52


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 25.0 bits (53), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 644 GYEVSAKDVAFSEEVHR 660
           GY +SA+D+ F+ + HR
Sbjct: 80  GYHLSARDITFNHKNHR 96


>gi|254780827|ref|YP_003065240.1| pantothenate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 311

 Score = 25.0 bits (53), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 125 AMPMITGIMNFVVPLQIGARDVSFPFLNNF 154
           A PMI+  ++F + +    RD+   +LN F
Sbjct: 209 ATPMISDFLDFSIYIDADKRDIHRWYLNRF 238


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.144    0.475 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,181
Number of Sequences: 1233
Number of extensions: 19342
Number of successful extensions: 63
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 9
length of query: 671
length of database: 328,796
effective HSP length: 80
effective length of query: 591
effective length of database: 230,156
effective search space: 136022196
effective search space used: 136022196
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 41 (20.4 bits)