HHsearch alignment for GI: 254780474 and conserved domain: MTH00023
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated.
Probab=100.00 E-value=0 Score=410.46 Aligned_cols=212 Identities=21% Similarity=0.329 Sum_probs=185.9
Q ss_pred HHHHHHHCCC---------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 9999874136---------4326898989999999999999999999999999999998853046777777875345661
Q gi|254780474|r 23 FSSVMLSGFE---------FIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTL 93 (332)
Q Consensus 23 ~~~~lLsGC~---------~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~ 93 (332)
T Consensus 4 ~~~~~~s~~~~~d~P~~wql~fQd~aSpime~i~~fHd~~m~ii~~I~~~V~~~l~~~~~~~~-------~~~~~~~n~~ 76 (247)
T MTH00023 4 LFFYIVNVCGKRDIPEPWQLGFQDAADPVMEEIVFFHDQIMFLLIIIVTVVLWLIVEALKGKF-------YDRYLVDGTL 76 (247)
T ss_pred HHHHHHCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCCHH
T ss_conf 245365262226899511259988489899999999989999999999999999999986378-------8763557633
Q ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCC-----------
Q ss_conf 255302278999999999999887751344420000124467888886689999984369999626787-----------
Q gi|254780474|r 94 LELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQV----------- 162 (332)
Q Consensus 94 lEi~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~gi----------- 162 (332)
T Consensus 77 lEi~WTiiP~lILv~ia~PS~~lLy~~d~--------------~~~p~ltiKviG~QWyWsYeY~d~~~~~~~FdSymi~ 142 (247)
T MTH00023 77 LEIVWTIIPAVILVFIALPSLKLLYLMDE--------------VVSPALTIKAIGHQWYWSYEYSDYEGETLEFDSYMVP 142 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------------CCCCCEEEEEEEEEEEEEEECCCCCCCEEEEEECCCC
T ss_conf 44669999999999999999998723445--------------7998679999998678999757778872357833367
Q ss_pred ------------CCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf ------------74306896369828999983581011022010740311698514899994277489666133265761
Q gi|254780474|r 163 ------------AIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGF 230 (332)
Q Consensus 163 ------------atvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~gh 230 (332)
T Consensus 143 ~~~~~~~~~rLLevDn~lvlP~~~~ir~~vtS~DViHS~~vP~lgvK~DavPGr~n~~~~~~~~~G~y~GqCsElCG~~H 222 (247)
T MTH00023 143 TSDLNSGDFRLLEVDNRLVVPINTHVRILVTGADVLHSFAVPSLGLKIDAVPGRLNQTGVFIKRPGVFYGQCSEICGANH 222 (247)
T ss_pred HHHCCCCCCHHHCCCCCEEEEECCCCEEEEECCCCCCEEECCCCCCEECCCCCCEEEEEEECCCCEEEEEECHHHCCCCC
T ss_conf 43325675222067886899974121799962764100332311513103698106899974897789998186709671
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 1365899970889999999998607
Q gi|254780474|r 231 SHMRFKFYGKSEKGFEDWISKVKRQ 255 (332)
Q Consensus 231 s~M~f~v~v~s~~~f~~Wv~~~ka~ 255 (332)
T Consensus 223 s~Mpi~v~~vs~~~f~~Wv~~~~~s 247 (247)
T MTH00023 223 SFMPIVIEAVSLDRYINWLLSLSNT 247 (247)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCC
T ss_conf 6880799998999999999971548