HHsearch alignment for GI: 254780474 and conserved domain: MTH00038

>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00  E-value=0  Score=420.48  Aligned_cols=202  Identities=19%  Similarity=0.368  Sum_probs=184.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
T Consensus         6 ql~fqd~~Sp~me~i~~fHd~~m~i~~~I~~~V~~~l~~~~~~~~~~~-------~~~~n~~LEi~WTiiP~iil~~i~~   78 (229)
T MTH00038          6 QLGLQDASSPLMEELIYFHDYALIILTLITILVFYGLASLLFSSNTNR-------FFLEGQGLETIWTVIPAFILIFIAL   78 (229)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf             179969789899999999999999999999999999999999737655-------3457823004399889999999999


Q ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf             99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r  112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV  170 (332)
Q Consensus       112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l  170 (332)
T Consensus        79 ps~~~ly~~~~--------------~~~~~~~ikv~G~QW~W~yeY~d~~~~~~ds~~~~~~d~~~g~~rll~vdn~lvl  144 (229)
T MTH00038         79 PSLQLLYLMDE--------------VNNPFLTIKAIGHQWYWSYEYTDYNDLEFDSYMVPTSDLSSGNPRLLEVDNRLVL  144 (229)
T ss_pred             HHHHHHHHCCC--------------CCCCCCCEEEEEEEEEEEEECCCCCCCEEEECCCCHHHCCCCCCEEECCCCCEEE
T ss_conf             99999982543--------------5687643013687667999814787522576156821203688413303663355


Q ss_pred             ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r  171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS  250 (332)
Q Consensus       171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~  250 (332)
T Consensus       145 P~~~~vrl~vtS~DVIHSf~vP~lg~K~DaiPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~V~~v~~~~f~~Wv~  224 (229)
T MTH00038        145 PSQTPIRVLVSSSDVLHSWAVPSLGVKMDAVPGRLNQVTFFISRPGLFYGQCSEICGANHSFMPIVIESVPFNTFENWVS  224 (229)
T ss_pred             EEECCCEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf             54013168876030000243541162543479852799998289667999826663804068816999979999999997


Q ss_pred             HHHC
Q ss_conf             9860
Q gi|254780474|r  251 KVKR  254 (332)
Q Consensus       251 ~~ka  254 (332)
T Consensus       225 ~~~e  228 (229)
T MTH00038        225 NFLE  228 (229)
T ss_pred             HHHC
T ss_conf             4122