HHsearch alignment for GI: 254780474 and conserved domain: MTH00038
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=420.48 Aligned_cols=202 Identities=19% Similarity=0.368 Sum_probs=184.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332)
Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332)
T Consensus 6 ql~fqd~~Sp~me~i~~fHd~~m~i~~~I~~~V~~~l~~~~~~~~~~~-------~~~~n~~LEi~WTiiP~iil~~i~~ 78 (229)
T MTH00038 6 QLGLQDASSPLMEELIYFHDYALIILTLITILVFYGLASLLFSSNTNR-------FFLEGQGLETIWTVIPAFILIFIAL 78 (229)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 179969789899999999999999999999999999999999737655-------3457823004399889999999999
Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf 99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV 170 (332)
Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l 170 (332)
T Consensus 79 ps~~~ly~~~~--------------~~~~~~~ikv~G~QW~W~yeY~d~~~~~~ds~~~~~~d~~~g~~rll~vdn~lvl 144 (229)
T MTH00038 79 PSLQLLYLMDE--------------VNNPFLTIKAIGHQWYWSYEYTDYNDLEFDSYMVPTSDLSSGNPRLLEVDNRLVL 144 (229)
T ss_pred HHHHHHHHCCC--------------CCCCCCCEEEEEEEEEEEEECCCCCCCEEEECCCCHHHCCCCCCEEECCCCCEEE
T ss_conf 99999982543--------------5687643013687667999814787522576156821203688413303663355
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332)
T Consensus 145 P~~~~vrl~vtS~DVIHSf~vP~lg~K~DaiPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~V~~v~~~~f~~Wv~ 224 (229)
T MTH00038 145 PSQTPIRVLVSSSDVLHSWAVPSLGVKMDAVPGRLNQVTFFISRPGLFYGQCSEICGANHSFMPIVIESVPFNTFENWVS 224 (229)
T ss_pred EEECCCEEEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 54013168876030000243541162543479852799998289667999826663804068816999979999999997
Q ss_pred HHHC
Q ss_conf 9860
Q gi|254780474|r 251 KVKR 254 (332)
Q Consensus 251 ~~ka 254 (332)
T Consensus 225 ~~~e 228 (229)
T MTH00038 225 NFLE 228 (229)
T ss_pred HHHC
T ss_conf 4122