HHsearch alignment for GI: 254780474 and conserved domain: MTH00051
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=411.54 Aligned_cols=214 Identities=21% Similarity=0.346 Sum_probs=184.7
Q ss_pred HHHHHHHHHCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99999987413----64326898989999999999999999999999999999998853046777777875345661255
Q gi|254780474|r 21 LFFSSVMLSGF----EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLEL 96 (332)
Q Consensus 21 l~~~~~lLsGC----~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi 96 (332)
T Consensus 6 ~~~~~~~~~~~p~~wql~fQd~~Sp~me~i~~fHd~~m~ii~~I~~~V~~~~~~~~~~~-------~~~~~~~~n~~lEi 78 (247)
T MTH00051 6 LFCLLLGLKDAPEPWQLGFQDAASPVMEEIIFFHDQIMFILTIIITTVLWLIIRALTTK-------HYHRYLFEGTLIEI 78 (247)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCCCHHHHH
T ss_conf 46878876489961042898989989999999987999999999999999999999637-------88673406711446
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCC--------------
Q ss_conf 302278999999999999887751344420000124467888886689999984369999626787--------------
Q gi|254780474|r 97 FVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQV-------------- 162 (332)
Q Consensus 97 ~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~gi-------------- 162 (332)
T Consensus 79 ~WTiiP~lILi~ia~PS~~~Ly~~de--------------~~~p~~tiKviG~QWyWsYeY~d~~~~~~~FdSym~~~~~ 144 (247)
T MTH00051 79 IWTLIPAIILIFIAFPSLKLLYLMDE--------------VIDPALTIKAIGHQWYWSYEYSDYGTDTIEFDSYMVPTSD 144 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC--------------CCCCCCEEEEEEEEEEEEEECCCCCCCEEEEEECCCCHHH
T ss_conf 69999999999999999999882344--------------7888511689998567999757688751247742478556
Q ss_pred ---------CCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf ---------74306896369828999983581011022010740311698514899994277489666133265761136
Q gi|254780474|r 163 ---------AIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM 233 (332)
Q Consensus 163 ---------atvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M 233 (332)
T Consensus 145 l~~~~~rLLevDn~lvlP~~~~Ir~lvTS~DViHS~~vPslgvK~DaiPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~M 224 (247)
T MTH00051 145 LNSGDLRLLEVDNRLVVPIQTQVRVLVTGADVLHSFAVPSLSVKIDAVPGRLNQTSFFIKRPGVFYGQCSEICGANHSFM 224 (247)
T ss_pred HCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCEEEEEEEHHHCCCCCCCC
T ss_conf 24577520146783699860440478861653111213322643014798216899984897658998077528572788
Q ss_pred EEEEEECCHHHHHHHHHHHHCC
Q ss_conf 5899970889999999998607
Q gi|254780474|r 234 RFKFYGKSEKGFEDWISKVKRQ 255 (332)
Q Consensus 234 ~f~v~v~s~~~f~~Wv~~~ka~ 255 (332)
T Consensus 225 pi~v~~v~~~~f~~W~~~~~~e 246 (247)
T MTH00051 225 PIVIEGVSLDKYINWVASQSEE 246 (247)
T ss_pred EEEEEEECHHHHHHHHHHHHHC
T ss_conf 3899998899999999976543