HHsearch alignment for GI: 254780474 and conserved domain: MTH00051

>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00  E-value=0  Score=411.54  Aligned_cols=214  Identities=21%  Similarity=0.346  Sum_probs=184.7

Q ss_pred             HHHHHHHHHCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             99999987413----64326898989999999999999999999999999999998853046777777875345661255
Q gi|254780474|r   21 LFFSSVMLSGF----EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLEL   96 (332)
Q Consensus        21 l~~~~~lLsGC----~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi   96 (332)
T Consensus         6 ~~~~~~~~~~~p~~wql~fQd~~Sp~me~i~~fHd~~m~ii~~I~~~V~~~~~~~~~~~-------~~~~~~~~n~~lEi   78 (247)
T MTH00051          6 LFCLLLGLKDAPEPWQLGFQDAASPVMEEIIFFHDQIMFILTIIITTVLWLIIRALTTK-------HYHRYLFEGTLIEI   78 (247)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCCCHHHHH
T ss_conf             46878876489961042898989989999999987999999999999999999999637-------88673406711446


Q ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCC--------------
Q ss_conf             302278999999999999887751344420000124467888886689999984369999626787--------------
Q gi|254780474|r   97 FVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQV--------------  162 (332)
Q Consensus        97 ~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~gi--------------  162 (332)
T Consensus        79 ~WTiiP~lILi~ia~PS~~~Ly~~de--------------~~~p~~tiKviG~QWyWsYeY~d~~~~~~~FdSym~~~~~  144 (247)
T MTH00051         79 IWTLIPAIILIFIAFPSLKLLYLMDE--------------VIDPALTIKAIGHQWYWSYEYSDYGTDTIEFDSYMVPTSD  144 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC--------------CCCCCCEEEEEEEEEEEEEECCCCCCCEEEEEECCCCHHH
T ss_conf             69999999999999999999882344--------------7888511689998567999757688751247742478556


Q ss_pred             ---------CCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf             ---------74306896369828999983581011022010740311698514899994277489666133265761136
Q gi|254780474|r  163 ---------AIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHM  233 (332)
Q Consensus       163 ---------atvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M  233 (332)
T Consensus       145 l~~~~~rLLevDn~lvlP~~~~Ir~lvTS~DViHS~~vPslgvK~DaiPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~M  224 (247)
T MTH00051        145 LNSGDLRLLEVDNRLVVPIQTQVRVLVTGADVLHSFAVPSLSVKIDAVPGRLNQTSFFIKRPGVFYGQCSEICGANHSFM  224 (247)
T ss_pred             HCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCEEEEEEEHHHCCCCCCCC
T ss_conf             24577520146783699860440478861653111213322643014798216899984897658998077528572788


Q ss_pred             EEEEEECCHHHHHHHHHHHHCC
Q ss_conf             5899970889999999998607
Q gi|254780474|r  234 RFKFYGKSEKGFEDWISKVKRQ  255 (332)
Q Consensus       234 ~f~v~v~s~~~f~~Wv~~~ka~  255 (332)
T Consensus       225 pi~v~~v~~~~f~~W~~~~~~e  246 (247)
T MTH00051        225 PIVIEGVSLDKYINWVASQSEE  246 (247)
T ss_pred             EEEEEEECHHHHHHHHHHHHHC
T ss_conf             3899998899999999976543