HHsearch alignment for GI: 254780474 and conserved domain: MTH00098

>MTH00098 COX2 cytochrome c oxidase subunit II; Validated.
Probab=100.00  E-value=0  Score=405.66  Aligned_cols=200  Identities=19%  Similarity=0.317  Sum_probs=177.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
T Consensus         6 Ql~fqd~aSp~~e~l~~fHd~~m~i~~~I~~~V~~~l~~~~~~k~~~-------~~~~~~~~LEi~WTiiP~liL~~ia~   78 (227)
T MTH00098          6 QLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTH-------TSTMDAQEVETIWTILPAIILILIAL   78 (227)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf             36888989989999999985799999999999999999999714565-------65667724430069999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf             99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r  112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV  170 (332)
Q Consensus       112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l  170 (332)
T Consensus        79 ps~~~ly~~~~--------------~~~~~ltvkv~G~QWyW~yeY~d~~~~~fdSym~~~~~~~~g~~rll~vdn~lvl  144 (227)
T MTH00098         79 PSLRILYMMDE--------------INNPSLTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTQDLKPGELRLLEVDNRVVL  144 (227)
T ss_pred             HHHHHHHHHCC--------------CCCCCEEEEEEEEEEEEEEECCCCCCEEEEECCCCHHHCCCCCCEEEECCCCEEE
T ss_conf             99999997023--------------6899879999998757999758888605552346710148887137722684598


Q ss_pred             ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r  171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS  250 (332)
Q Consensus       171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~  250 (332)
T Consensus       145 P~~~~v~~~itS~DViHSf~vP~lg~K~DavPGr~~~~~~~~~~~G~~~g~CsE~CG~~Hs~M~~~v~v~~~~~f~~W~~  224 (227)
T MTH00098        145 PMEMPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLTSTRPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSA  224 (227)
T ss_pred             EEEEEEEEEEECCCCHHEEECCCCCEEEECCCCCEEEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEECHHHHHHHHH
T ss_conf             52208999965596132375442045640469821689998189888999808881904128837999988999999999


Q ss_pred             HH
Q ss_conf             98
Q gi|254780474|r  251 KV  252 (332)
Q Consensus       251 ~~  252 (332)
T Consensus       225 ~~  226 (227)
T MTH00098        225 SM  226 (227)
T ss_pred             HH
T ss_conf             51