HHsearch alignment for GI: 254780474 and conserved domain: MTH00129

>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00  E-value=0  Score=419.73  Aligned_cols=204  Identities=19%  Similarity=0.330  Sum_probs=180.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
T Consensus         6 Ql~fqd~~S~ime~i~~~hd~vm~ii~~I~~~V~~~l~~~~~~~~~-------~k~~~~n~~LEiiWTiiP~lIL~~ia~   78 (230)
T MTH00129          6 QLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKLT-------NKYILDSQEIEIIWTVLPAVILILIAL   78 (230)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf             0899898998999999999889999999999999999999971677-------555568833440168999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf             99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r  112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV  170 (332)
Q Consensus       112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l  170 (332)
T Consensus        79 pS~~~ly~~~~--------------~~~~~ltIkv~G~QW~W~yeY~d~~~~~~~sym~~~~~~~~~~~rll~vdn~lvl  144 (230)
T MTH00129         79 PSLRILYLMDE--------------INDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLETDHRMVV  144 (230)
T ss_pred             HHHHHHHHHCC--------------CCCCCEEEEEEEEEEEEEEECCCCCCCCCEECCCCHHHCCCCCCEEECCCCCEEE
T ss_conf             99999998212--------------5799769998758999999738988753110467856706787257603573277


Q ss_pred             ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r  171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS  250 (332)
Q Consensus       171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~  250 (332)
T Consensus       145 P~~~~v~~~~tS~DViHsf~vP~l~~k~davPG~~n~~~~~~~~~G~y~g~CsElCG~~Hs~M~~~v~~v~~~~f~~Wl~  224 (230)
T MTH00129        145 PVESPIRVLVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSS  224 (230)
T ss_pred             ECCCEEEEEEECCCHHHHEECHHHCCEECCCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCEEEEEEECHHHHHHHHH
T ss_conf             50668999961474245043101162210579842589998289888999817642813158968999987999999997


Q ss_pred             HHHCCC
Q ss_conf             986072
Q gi|254780474|r  251 KVKRQG  256 (332)
Q Consensus       251 ~~ka~~  256 (332)
T Consensus       225 ~~~~~a  230 (230)
T MTH00129        225 LMLEDA  230 (230)
T ss_pred             HHHHCC
T ss_conf             566449