HHsearch alignment for GI: 254780474 and conserved domain: MTH00129
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=419.73 Aligned_cols=204 Identities=19% Similarity=0.330 Sum_probs=180.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332)
Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332)
T Consensus 6 Ql~fqd~~S~ime~i~~~hd~vm~ii~~I~~~V~~~l~~~~~~~~~-------~k~~~~n~~LEiiWTiiP~lIL~~ia~ 78 (230)
T MTH00129 6 QLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKLT-------NKYILDSQEIEIIWTVLPAVILILIAL 78 (230)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf 0899898998999999999889999999999999999999971677-------555568833440168999999999999
Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf 99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV 170 (332)
Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l 170 (332)
T Consensus 79 pS~~~ly~~~~--------------~~~~~ltIkv~G~QW~W~yeY~d~~~~~~~sym~~~~~~~~~~~rll~vdn~lvl 144 (230)
T MTH00129 79 PSLRILYLMDE--------------INDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLTPGQFRLLETDHRMVV 144 (230)
T ss_pred HHHHHHHHHCC--------------CCCCCEEEEEEEEEEEEEEECCCCCCCCCEECCCCHHHCCCCCCEEECCCCCEEE
T ss_conf 99999998212--------------5799769998758999999738988753110467856706787257603573277
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332)
T Consensus 145 P~~~~v~~~~tS~DViHsf~vP~l~~k~davPG~~n~~~~~~~~~G~y~g~CsElCG~~Hs~M~~~v~~v~~~~f~~Wl~ 224 (230)
T MTH00129 145 PVESPIRVLVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSS 224 (230)
T ss_pred ECCCEEEEEEECCCHHHHEECHHHCCEECCCCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCEEEEEEECHHHHHHHHH
T ss_conf 50668999961474245043101162210579842589998289888999817642813158968999987999999997
Q ss_pred HHHCCC
Q ss_conf 986072
Q gi|254780474|r 251 KVKRQG 256 (332)
Q Consensus 251 ~~ka~~ 256 (332)
T Consensus 225 ~~~~~a 230 (230)
T MTH00129 225 LMLEDA 230 (230)
T ss_pred HHHHCC
T ss_conf 566449