HHsearch alignment for GI: 254780474 and conserved domain: PRK10525
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional.
Probab=100.00 E-value=0 Score=756.25 Aligned_cols=299 Identities=43% Similarity=0.819 Sum_probs=290.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 35668899999999998741364326898989999999999999999999999999999998853046777777875345
Q gi|254780474|r 11 SVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCH 90 (332)
Q Consensus 11 ~~~k~l~~~~l~~~~~lLsGC~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~h 90 (332)
T Consensus 5 ~~~~~~~~l~l~~~~~lLsGC~~~~LdPkGpva~~q~~Li~~s~~lMliVvvpVi~l~~~~~~ryR~~~~~a~y~P~w~h 84 (305)
T PRK10525 5 KYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSH 84 (305)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC
T ss_conf 77778999999999998667876328999877899998999999999868999999999988411136899887997557
Q ss_pred CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEE
Q ss_conf 66125530227899999999999988775134442000012446788888668999998436999962678774306896
Q gi|254780474|r 91 STLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVV 170 (332)
Q Consensus 91 s~~lEi~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~l 170 (332)
T Consensus 85 s~~lE~viWtIPilIIi~Lav~T~~~t~~Ldp~~p~---------~~~~~pl~V~Vv~~qWkW~F~YPe~gIat~NeL~i 155 (305)
T PRK10525 85 SNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAF 155 (305)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---------CCCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEE
T ss_conf 874530468999999999999999887752677878---------88889779999988415999957988356678998
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC-CHHHHHHHH
Q ss_conf 3698289999835810110220107403116985148999942774896661332657611365899970-889999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK-SEKGFEDWI 249 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~-s~~~f~~Wv 249 (332)
T Consensus 156 P~~~pV~f~lTS~dVihSF~IP~L~gk~dampG~~t~l~~~a~~~G~Y~G~cae~cG~ghs~M~F~v~a~~~~~~Fd~WV 235 (305)
T PRK10525 156 PANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAEFDQWV 235 (305)
T ss_pred ECCCEEEEEEEECCEEEEEEECCCCCCEECCCCCCEEEEEECCCCEEEEEECHHCCCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 78987999997277111032131156410379862389998489757888723004803058877999768989999999
Q ss_pred HHHHCCCCCC-CHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHH
Q ss_conf 9986072456-98999997610212632172047835426873152444885660210246668852344
Q gi|254780474|r 250 SKVKRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRG 318 (332)
Q Consensus 250 ~~~ka~~~~l-~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~ 318 (332)
T Consensus 236 ~~vk~s~~~l~~~~~y~~l~~ps~~~~v~yf~~v~~~Lf~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (305)
T PRK10525 236 AKAKQSPNTMNDMAAFEKLAAPSEYNPVEYFSSVKPDLFKDVINKFMGHGKSMDMTQPEGEHSAHEGMEG 305 (305)
T ss_pred HHHHCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 9986187557758899998588868996462468930899999997128857665431343003566589