HHsearch alignment for GI: 254780474 and conserved domain: TIGR01433
>TIGR01433 CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333 Members of this domain catalyze the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in Gram-positive bacteria but which is in complex with subunits which utilise cytochrome a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cytochrome c as the oxidant . ; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0006118 electron transport, 0016020 membrane.
Probab=100.00 E-value=0 Score=689.93 Aligned_cols=226 Identities=54% Similarity=1.046 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99999999874136-43268989899999999999999999999999999999988530467777778753456612553
Q gi|254780474|r 19 FFLFFSSVMLSGFE-FIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELF 97 (332)
Q Consensus 19 ~~l~~~~~lLsGC~-~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~ 97 (332)
T Consensus 1 L~~~~~~~lLsGCNn~~LL~PkG~ig~eersLIL~a~~~MLlvviPVI~~Tl~FAWKYR~tN~~~~Y~P~W~HS~kiE~V 80 (228)
T TIGR01433 1 LSLILASLLLSGCNNLVLLDPKGQIGLEERSLILTAFGLMLLVVIPVILLTLFFAWKYRETNKKADYKPNWHHSTKIEIV 80 (228)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 85778999861256765538888653024668999999999999999999998778866655530378885667777860
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEE
Q ss_conf 02278999999999999887751344420000124467888886689999984369999626787743068963698289
Q gi|254780474|r 98 VWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLE 177 (332)
Q Consensus 98 wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~ 177 (332)
T Consensus 81 VW~iP~~Ii~fLg~ltW~~THkLDP~rPL~---------s~~kPI~iEVVAlDWKWLFIYP~~GIAtvNE~A~PVn~Pin 151 (228)
T TIGR01433 81 VWTIPILIIVFLGVLTWISTHKLDPYRPLA---------SDVKPITIEVVALDWKWLFIYPDYGIATVNEIAFPVNVPIN 151 (228)
T ss_pred EHHHHHHHHHHHHHHHHHHCCCCCCCCCHH---------HCCCCEEEEEEEECCEEEEECCCCCHHHHHHHHCCCCCCEE
T ss_conf 212348888787785310001458887642---------45895279998706701341166642416744135988657
Q ss_pred EEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEC-CHHHHHHHHHHHH
Q ss_conf 999835810110220107403116985148999942774896661332657611365899970-8899999999986
Q gi|254780474|r 178 FRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGK-SEKGFEDWISKVK 253 (332)
Q Consensus 178 f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~-s~~~f~~Wv~~~k 253 (332)
T Consensus 152 Fk~Ts~s~MNsFFIP~LGSqiYaM~GMqTkLHLIAN~~G~Y~GISAnYSG~GFS~M~FKa~a~~~~~~FD~WV~kvK 228 (228)
T TIGR01433 152 FKITSNSVMNSFFIPQLGSQIYAMAGMQTKLHLIANEEGVYDGISANYSGPGFSDMKFKAIATLDRAAFDQWVAKVK 228 (228)
T ss_pred EEECCCCCCHHHCCCCCCCCEEECCCCCCCHHCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCC
T ss_conf 87754546212220122452244665321011044689872440124467771107453430423445678875059