HHsearch alignment for GI: 254780474 and conserved domain: pfam02009
>pfam02009 Rifin_STEVOR Rifin/stevor family. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens.
Probab=91.35 E-value=0.5 Score=27.17 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.7
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999885304677
Q gi|254780474|r 67 SILFFAWKYRSTNK 80 (332)
Q Consensus 67 l~~~~~~kyR~~~~ 80 (332)
T Consensus 263 vIIYLILRYRRKKK 276 (289)
T pfam02009 263 LIIYLILRYRRKKK 276 (289)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999998732125